Citrus Sinensis ID: 035902
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 381 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LPL3 | 391 | Putative flavin-containin | yes | no | 0.968 | 0.943 | 0.590 | 1e-129 | |
| Q9FVQ0 | 383 | Flavin-containing monooxy | no | no | 0.976 | 0.971 | 0.555 | 1e-116 | |
| O64489 | 421 | Flavin-containing monooxy | no | no | 0.947 | 0.857 | 0.488 | 1e-102 | |
| Q9SVU0 | 426 | Flavin-containing monooxy | no | no | 0.955 | 0.854 | 0.481 | 1e-101 | |
| Q9LKC0 | 424 | Flavin-containing monooxy | no | no | 0.955 | 0.858 | 0.493 | 1e-101 | |
| O23024 | 437 | Flavin-containing monooxy | no | no | 0.955 | 0.832 | 0.476 | 3e-99 | |
| Q9LFM5 | 411 | Flavin-containing monooxy | no | no | 0.942 | 0.873 | 0.486 | 3e-98 | |
| Q8VZ59 | 417 | Flavin-containing monooxy | no | no | 0.976 | 0.892 | 0.472 | 6e-97 | |
| Q9SZY8 | 414 | Flavin-containing monooxy | no | no | 0.958 | 0.881 | 0.455 | 4e-94 | |
| Q9SVQ1 | 415 | Flavin-containing monooxy | no | no | 0.963 | 0.884 | 0.448 | 9e-94 |
| >sp|Q9LPL3|YUC11_ARATH Putative flavin-containing monooxygenase YUCCA11 OS=Arabidopsis thaliana GN=YUC11 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/374 (59%), Positives = 285/374 (76%), Gaps = 5/374 (1%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELP 62
++ V+I+GAGPAGLATSACLN L++PNI++ER+ CSASLWK+R+YDR+KLHLAKQFC+LP
Sbjct: 6 KILVLIIGAGPAGLATSACLNRLNIPNIVVERDVCSASLWKRRSYDRLKLHLAKQFCQLP 65
Query: 63 HMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALD 122
HMPFPS TPTFV ++ FINY+D Y ++ +NPRY+R+V+SA + + WI+ N
Sbjct: 66 HMPFPSNTPTFVSKLGFINYLDEYATRFNVNPRYNRNVKSAYFKDGQ--WIVKVVNKTTA 123
Query: 123 AYEEYVARYLVVATGENG--LIPEVPGL-GSFEGEYMHSSKYENGGKFIGKNVLVVGCGN 179
E Y A+++V ATGENG +IPE+PGL SF+G+Y+HSS+Y+NG KF GK+VLVVGCGN
Sbjct: 124 LIEVYSAKFMVAATGENGEGVIPEIPGLVESFQGKYLHSSEYKNGEKFAGKDVLVVGCGN 183
Query: 180 SGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239
SGMEIAYDLS C A SIVVR VHVLTR IV GM LL+F P KLVD + ++L++++F
Sbjct: 184 SGMEIAYDLSKCNANVSIVVRSQVHVLTRCIVRIGMSLLRFFPVKLVDRLCLLLAELRFR 243
Query: 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGK 299
N +YGL RP GPF K ITG++ TIDVG + +I+ G+IQV SI I VEF +G
Sbjct: 244 NTSRYGLVRPNNGPFLNKLITGRSATIDVGCVGEIKSGKIQVVTSIKRIEGKTVEFIDGN 303
Query: 300 IEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359
+ ++I+FATGYKS+V WL+ D D F+E GMPKR P+HWKG+NGLY AGF + GL
Sbjct: 304 TKNVDSIVFATGYKSSVSKWLEVDDGDLFNENGMPKREFPDHWKGKNGLYSAGFGKQGLA 363
Query: 360 GISIDAKNIANDIN 373
GIS DA+NIA DI+
Sbjct: 364 GISRDARNIARDID 377
|
Involved in auxin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: - |
| >sp|Q9FVQ0|YUC10_ARATH Flavin-containing monooxygenase YUCCA10 OS=Arabidopsis thaliana GN=YUC10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 275/378 (72%), Gaps = 6/378 (1%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELP 62
E VVIVGAGPAGLATS CLN S+PN+ILE+ED ASLWKKRAYDR+KLHLAK+FC+LP
Sbjct: 2 ETVVVIVGAGPAGLATSVCLNQHSIPNVILEKEDIYASLWKKRAYDRLKLHLAKEFCQLP 61
Query: 63 HMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALD 122
MP PTF+ + F+NY+D YV++ INPRY+R+V+S+++DE+ W +VA+NT
Sbjct: 62 FMPHGREVPTFMSKELFVNYLDAYVARFDINPRYNRTVKSSTFDESNNKWRVVAENTVTG 121
Query: 123 AYEEYVARYLVVATGENGL--IPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNS 180
E Y + +LVVATGENG IP V G+ +F GE MHSS+Y++G F KNVLVVG GNS
Sbjct: 122 ETEVYWSEFLVVATGENGDGNIPMVEGIDTFGGEIMHSSEYKSGRDFKDKNVLVVGGGNS 181
Query: 181 GMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGN 240
GMEI++DL + GA T+I++R P HV+T+E++ GM LLK+ P +VD +V ++K+ +G+
Sbjct: 182 GMEISFDLCNFGANTTILIRTPRHVVTKEVIHLGMTLLKYAPVAMVDTLVTTMAKILYGD 241
Query: 241 LFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVF-PSITSINRNEVEFENGK 299
L KYGL RPK+GPF K TG+ P IDVG ++KIR GEIQV I SIN + FENG
Sbjct: 242 LSKYGLFRPKQGPFATKLFTGKAPVIDVGTVEKIRDGEIQVINGGIGSINGKTLTFENGH 301
Query: 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
++F+AI+FATGYKS+V NWL+ D ++ + G PK P HWKGE LYCAGFSR G+
Sbjct: 302 KQDFDAIVFATGYKSSVCNWLE--DYEYVMKKDGFPKAPMPKHWKGEKNLYCAGFSRKGI 359
Query: 359 HGISIDAKNIANDINLAL 376
G + DA ++A+DI L
Sbjct: 360 AGGAEDAMSVADDIRSIL 377
|
Involved in auxin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|O64489|YUC9_ARATH Flavin-containing monooxygenase YUCCA9 OS=Arabidopsis thaliana GN=YUC9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/375 (48%), Positives = 269/375 (71%), Gaps = 14/375 (3%)
Query: 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF 66
VIVGAGP+GLAT+ACL++ VP +++ER DC ASLW+KR YDR+KLHL K+FC+LP MPF
Sbjct: 26 VIVGAGPSGLATAACLHDQGVPFVVVERSDCIASLWQKRTYDRLKLHLPKKFCQLPKMPF 85
Query: 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE- 125
P P + + FI+Y+++Y ++ I P +++SVESA +DE + W + T D E
Sbjct: 86 PDHYPEYPTKRQFIDYLESYANRFDIKPEFNKSVESARFDETSGLWRV---RTTSDGEEM 142
Query: 126 EYVARYLVVATGENG--LIPEVPGLGS-FEGEYMHSSKYENGGKFIGKNVLVVGCGNSGM 182
EY+ R+LVVATGEN ++PE+ GL + F+GE +H+ +Y++G KF GK VLVVGCGNSGM
Sbjct: 143 EYICRWLVVATGENAERVVPEINGLMTEFDGEVIHACEYKSGEKFRGKRVLVVGCGNSGM 202
Query: 183 EIAYDLSSCGACTSIVVRGPVHVLTREIVFA-----GMLLLKFLPCKLVDFIVVMLSKMK 237
E++ DL++ A TS+VVR VHVL REI+ ++++K+LP LVD ++++LS +
Sbjct: 203 EVSLDLANHNAITSMVVRSSVHVLPREIMGKSTFGISVMMMKWLPLWLVDKLLLILSWLV 262
Query: 238 FGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFEN 297
G+L YGL+RP GP K++TG+TP +D+GA++KI+ G++++ P+I +R+ VE +
Sbjct: 263 LGSLSNYGLKRPDIGPMELKSMTGKTPVLDIGALEKIKSGDVEIVPAIKQFSRHHVELVD 322
Query: 298 GKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357
G+ + +A++ ATGY+S V +WL+ + +FF + G PK PN WKG++GLY AGF+R G
Sbjct: 323 GQKLDIDAVVLATGYRSNVPSWLQ--ESEFFSKNGFPKSPFPNAWKGKSGLYAAGFTRKG 380
Query: 358 LHGISIDAKNIANDI 372
L G S+DA NIA DI
Sbjct: 381 LAGASVDAVNIAQDI 395
|
Involved in auxin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|Q9SVU0|YUC8_ARATH Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/376 (48%), Positives = 259/376 (68%), Gaps = 12/376 (3%)
Query: 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF 66
VIVGAGP+GLAT+ACL+ +VP ++LER DC ASLW+KR YDR+KLHL KQFC+LP MPF
Sbjct: 26 VIVGAGPSGLATAACLHEQNVPFVVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKMPF 85
Query: 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWII--VAKNTALDAY 124
P P + + FI+Y+++Y ++ INP+++ V++A +DE + W + V+K+ +
Sbjct: 86 PEDFPEYPTKRQFIDYLESYATRFEINPKFNECVQTARFDETSGLWRVKTVSKSESTQTE 145
Query: 125 EEYVARYLVVATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGM 182
EY+ R+LVVATGEN ++PE+ GL F GE +H+ Y++G KF GK VLVVGCGNSGM
Sbjct: 146 VEYICRWLVVATGENAERVMPEIDGLSEFSGEVIHACDYKSGEKFAGKKVLVVGCGNSGM 205
Query: 183 EIAYDLSSCGACTSIVVRGPVHVLTREIVFA-----GMLLLKFLPCKLVDFIVVMLSKMK 237
E++ DL++ A S+VVR +HV+ RE++ M +L++ P LVD I+++LS M
Sbjct: 206 EVSLDLANHFAKPSMVVRSSLHVMPREVMGKSTFELAMKMLRWFPLWLVDKILLVLSWMV 265
Query: 238 FGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFEN 297
GN+ KYGL+RP+ GP K++ G+TP +D+GA++KIR G+I V P I N N+VE N
Sbjct: 266 LGNIEKYGLKRPEMGPMELKSVKGKTPVLDIGAIEKIRLGKINVVPGIKRFNGNKVELVN 325
Query: 298 GKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNH-WKGENGLYCAGFSRT 356
G+ + ++++ ATGY+S V WL+ + +FF + G PK N+ WKG GLY GF+R
Sbjct: 326 GEQLDVDSVVLATGYRSNVPYWLQ--ENEFFAKNGFPKTVADNNGWKGRTGLYAVGFTRK 383
Query: 357 GLHGISIDAKNIANDI 372
GL G S+DA IA DI
Sbjct: 384 GLSGASMDAVKIAQDI 399
|
Involved in auxin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|Q9LKC0|YUC5_ARATH Flavin-containing monooxygenase YUCCA5 OS=Arabidopsis thaliana GN=YUC5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/375 (49%), Positives = 261/375 (69%), Gaps = 11/375 (2%)
Query: 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF 66
VIVGAGP+GLAT+ACL VP ++LER DC ASLW+KR YDR+KLHL K+ C+LP MPF
Sbjct: 26 VIVGAGPSGLATAACLREEGVPFVVLERADCIASLWQKRTYDRIKLHLPKKVCQLPKMPF 85
Query: 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE- 125
P P + + FI Y+++Y ++ I P+++ V+SA YDE + W I +++ E
Sbjct: 86 PEDYPEYPTKRQFIEYLESYANKFEITPQFNECVQSARYDETSGLWRIKTTSSSSSGSEM 145
Query: 126 EYVARYLVVATGENG--LIPEVPGLGS-FEGEYMHSSKYENGGKFIGKNVLVVGCGNSGM 182
EY+ R+LVVATGEN ++PE+ GL + FEGE +HS +Y++G K+ GK+VLVVGCGNSGM
Sbjct: 146 EYICRWLVVATGENAEKVVPEIDGLTTEFEGEVIHSCEYKSGEKYRGKSVLVVGCGNSGM 205
Query: 183 EIAYDLSSCGACTSIVVRGPVHVLTREIVFA-----GMLLLKFLPCKLVDFIVVMLSKMK 237
E++ DL++ A S+VVR VHVL REI+ M+L+K+ P LVD I+++L+ +
Sbjct: 206 EVSLDLANHNANASMVVRSSVHVLPREILGKSSFEISMMLMKWFPLWLVDKILLILAWLI 265
Query: 238 FGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFEN 297
GNL KYGL+RP GP K ++G+TP +D+GAM+KI+ GE+++ P I +R+ VE +
Sbjct: 266 LGNLTKYGLKRPTMGPMELKIVSGKTPVLDIGAMEKIKSGEVEIVPGIKRFSRSHVELVD 325
Query: 298 GKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357
G+ + +A++ ATGY+S V +WL+ + D F + G PK PN WKG++GLY AGF+R G
Sbjct: 326 GQRLDLDAVVLATGYRSNVPSWLQ--ENDLFSKNGFPKSPFPNAWKGKSGLYAAGFTRKG 383
Query: 358 LHGISIDAKNIANDI 372
L G S DA NIA DI
Sbjct: 384 LAGASADAVNIAQDI 398
|
Involved in auxin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|O23024|YUC3_ARATH Flavin-containing monooxygenase YUCCA3 OS=Arabidopsis thaliana GN=YUC3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 179/376 (47%), Positives = 253/376 (67%), Gaps = 12/376 (3%)
Query: 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF 66
VIVGAGP+GLA +A L VP IILER +C ASLW+ R YDR+KLHL KQFC+LP+ PF
Sbjct: 38 VIVGAGPSGLAVAAGLKREGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNYPF 97
Query: 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWII--VAKNTALDAY 124
P P + + FI Y+++Y + INP+++ +V+SA YDE W + ++ L +
Sbjct: 98 PDEFPEYPTKFQFIQYLESYAANFDINPKFNETVQSAKYDETFGLWRVKTISNMGQLGSC 157
Query: 125 E-EYVARYLVVATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSG 181
E EY+ R++VVATGEN ++P+ GL F G+ +H+ Y++GG++ GK VLVVGCGNSG
Sbjct: 158 EFEYICRWIVVATGENAEKVVPDFEGLEDFGGDVLHAGDYKSGGRYQGKKVLVVGCGNSG 217
Query: 182 MEIAYDLSSCGACTSIVVRGPVHVLTREIVFA-----GMLLLKFLPCKLVDFIVVMLSKM 236
ME++ DL + GA S+VVR VHVL REI G+ ++K++P L D ++ L+++
Sbjct: 218 MEVSLDLYNHGANPSMVVRSAVHVLPREIFGKSTFELGVTMMKYMPVWLADKTILFLARI 277
Query: 237 KFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFE 296
GN KYGL+RPK GP K G+TP +D+GA+ KIR G+I++ P I + +VE
Sbjct: 278 ILGNTDKYGLKRPKIGPLELKNKEGKTPVLDIGALPKIRSGKIKIVPGIIKFGKGKVELI 337
Query: 297 NGKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRT 356
+G++ E +++I ATGY+S V +WLK D DFF + G+PK PN WKGE GLY GF+R
Sbjct: 338 DGRVLEIDSVILATGYRSNVPSWLK--DNDFFSDDGIPKNPFPNGWKGEAGLYAVGFTRK 395
Query: 357 GLHGISIDAKNIANDI 372
GL G S+DA ++A+DI
Sbjct: 396 GLFGASLDAMSVAHDI 411
|
Involved in auxin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|Q9LFM5|YUC4_ARATH Flavin-containing monooxygenase YUCCA4 OS=Arabidopsis thaliana GN=YUC4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 182/374 (48%), Positives = 241/374 (64%), Gaps = 15/374 (4%)
Query: 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF 66
+IVGAGP+GLA +ACL+N VP++ILER DC ASLW+KR YDR+KLHL K FCELP MPF
Sbjct: 18 IIVGAGPSGLAVAACLSNRGVPSVILERTDCLASLWQKRTYDRLKLHLPKHFCELPLMPF 77
Query: 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126
P P + + FI+YV++Y ++ I P ++++VE A +D+ + W + ++
Sbjct: 78 PKNFPKYPSKQLFISYVESYAARFNIKPVFNQTVEKAEFDDASGLWNVKTQDGV------ 131
Query: 127 YVARYLVVATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEI 184
Y + +LVVATGEN + P +PGL F G +H+S Y++G F + VLVVGCGNSGME+
Sbjct: 132 YTSTWLVVATGENAEPVFPNIPGLKKFTGPVVHTSAYKSGSAFANRKVLVVGCGNSGMEV 191
Query: 185 AYDLSSCGACTSIVVRGPVHVLTREI----VFA-GMLLLKFLPCKLVDFIVVMLSKMKFG 239
+ DL A +VVR VHVL R+ F M LLK+ P KLVD +++L+ G
Sbjct: 192 SLDLCRYNALPHMVVRNSVHVLPRDFFGLSTFGIAMTLLKWFPLKLVDKFLLLLANSTLG 251
Query: 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGK 299
N GL RPK GP K +TG+TP +DVGA+ IR G+I+V ++ I RN +F NGK
Sbjct: 252 NTDLLGLRRPKTGPIELKNVTGKTPVLDVGAISLIRSGQIKVTQAVKEITRNGAKFLNGK 311
Query: 300 IEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359
EF++II ATGYKS V +WLK + FF + GMPK PN WKGE GLY GF+R GL
Sbjct: 312 EIEFDSIILATGYKSNVPDWLK--ENSFFTKEGMPKTPFPNGWKGEKGLYTVGFTRRGLS 369
Query: 360 GISIDAKNIANDIN 373
G + DA IA DI
Sbjct: 370 GTAYDAVKIAEDIT 383
|
Involved in auxin biosynthesis. Involved during embryogenesis and seedling development. Required for the formation of floral organs and vascular tissues. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|Q8VZ59|YUC6_ARATH Flavin-containing monooxygenase YUCCA6 OS=Arabidopsis thaliana GN=YUC6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 182/385 (47%), Positives = 249/385 (64%), Gaps = 13/385 (3%)
Query: 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF 66
VIVGAGP+GLAT+ACL + +++LER +C ASLW+ + YDR+ LHL KQFCELP +PF
Sbjct: 33 VIVGAGPSGLATAACLKERGITSVLLERSNCIASLWQLKTYDRLHLHLPKQFCELPIIPF 92
Query: 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126
P PT+ + FI Y+++Y + I P ++++VESA++DEN W + + + E
Sbjct: 93 PGDFPTYPTKQQFIEYLEDYARRFDIKPEFNQTVESAAFDENLGMWRVTS--VGEEGTTE 150
Query: 127 YVARYLVVATGENG--LIPEVPGLGSF--EGEYMHSSKYENGGKFIGKNVLVVGCGNSGM 182
YV R+LV ATGEN ++P G+ F G H+ Y+ GG F GK VLVVGCGNSGM
Sbjct: 151 YVCRWLVAATGENAEPVVPRFEGMDKFAAAGVVKHTCHYKTGGDFAGKRVLVVGCGNSGM 210
Query: 183 EIAYDLSSCGACTSIVVRGPVHVLTREIVFA-----GMLLLKFLPCKLVDFIVVMLSKMK 237
E+ DL + GA S+VVR VHVL RE++ M LLK+LP +LVD ++++S+
Sbjct: 211 EVCLDLCNFGAQPSLVVRDAVHVLPREMLGTSTFGLSMFLLKWLPIRLVDRFLLVVSRFI 270
Query: 238 FGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFEN 297
G+ GL RP+ GP K I+G+TP +DVG + KI+ G+I+V I + R+EVEF+N
Sbjct: 271 LGDTTLLGLNRPRLGPLELKNISGKTPVLDVGTLAKIKTGDIKVCSGIRRLKRHEVEFDN 330
Query: 298 GKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357
GK E F+AII ATGYKS V +WLK +K F + G P + P W+GE GLY GF++ G
Sbjct: 331 GKTERFDAIILATGYKSNVPSWLKE-NKMFSKKDGFPIQEFPEGWRGECGLYAVGFTKRG 389
Query: 358 LHGISIDAKNIANDINLAL-TDHQV 381
+ G S+DAK IA DI+ D QV
Sbjct: 390 ISGASMDAKRIAEDIHKCWKQDEQV 414
|
Involved in auxin biosynthesis. Required for the formation of floral organs and vascular tissues. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|Q9SZY8|YUC1_ARATH Flavin-containing monooxygenase YUCCA1 OS=Arabidopsis thaliana GN=YUC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (884), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 173/380 (45%), Positives = 246/380 (64%), Gaps = 15/380 (3%)
Query: 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF 66
+I+GAGP+GLATSACL++ VP++ILER D ASLWK + YDR++LHL K FC LP + F
Sbjct: 22 IIIGAGPSGLATSACLSSRGVPSLILERSDSIASLWKSKTYDRLRLHLPKHFCRLPLLDF 81
Query: 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126
P P + + F+ Y+++Y S I PR++++V++A+YD ++ W + + E
Sbjct: 82 PEYYPKYPSKNEFLAYLESYASHFRIAPRFNKNVQNAAYDSSSGFWRVKTHDNT-----E 136
Query: 127 YVARYLVVATGENG--LIPEVPGLGSFE-GEYMHSSKYENGGKFIGKNVLVVGCGNSGME 183
Y++++L+VATGEN PE+PG F G+ +H+S+Y++G +F + VLVVGCGNSGME
Sbjct: 137 YLSKWLIVATGENADPYFPEIPGRKKFSGGKIVHASEYKSGEEFRRQKVLVVGCGNSGME 196
Query: 184 IAYDLSSCGACTSIVVRGPVHVLTREIV-----FAGMLLLKFLPCKLVDFIVVMLSKMKF 238
I+ DL A +VVR VHVL REI+ GM LLK LP +LVD +++++ + F
Sbjct: 197 ISLDLVRHNASPHLVVRNTVHVLPREILGVSTFGVGMTLLKCLPLRLVDKFLLLMANLSF 256
Query: 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENG 298
GN + GL RPK GP K +TG++P +DVGAM IR G IQ+ + I + +F +G
Sbjct: 257 GNTDRLGLRRPKTGPLELKNVTGKSPVLDVGAMSLIRSGMIQIMEGVKEITKKGAKFMDG 316
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
+ ++F++IIFATGYKS V WL+ DFF + GMPK PN W+G GLY GF+R GL
Sbjct: 317 QEKDFDSIIFATGYKSNVPTWLQGG--DFFTDDGMPKTPFPNGWRGGKGLYTVGFTRRGL 374
Query: 359 HGISIDAKNIANDINLALTD 378
G + DA IA +I D
Sbjct: 375 LGTASDAVKIAGEIGDQWRD 394
|
Catalyze N-oxidation of tryptamine to form N-hydroxyl tryptamine in auxin biosynthesis. Involved during embryogenesis and seedling development. Required for the formation of floral organs and vascular tissues. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
| >sp|Q9SVQ1|YUC2_ARATH Flavin-containing monooxygenase YUCCA2 OS=Arabidopsis thaliana GN=YUC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 168/375 (44%), Positives = 240/375 (64%), Gaps = 8/375 (2%)
Query: 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF 66
+IVG+GP+GLAT+ACL + +P++ILER C ASLW+ + YDR++LHL K FCELP MPF
Sbjct: 29 IIVGSGPSGLATAACLKSRDIPSLILERSTCIASLWQHKTYDRLRLHLPKDFCELPLMPF 88
Query: 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126
PS PT+ + F+ Y+++Y + P ++++VE A +D W + D E
Sbjct: 89 PSSYPTYPTKQQFVQYLESYAEHFDLKPVFNQTVEEAKFDRRCGLWRVRTTGGKKDETME 148
Query: 127 YVARYLVVATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEI 184
YV+R+LVVATGEN ++PE+ G+ F G +H+S Y++G F K +LVVGCGNSGME+
Sbjct: 149 YVSRWLVVATGENAEEVMPEIDGIPDFGGPILHTSSYKSGEIFSEKKILVVGCGNSGMEV 208
Query: 185 AYDLSSCGACTSIVVRGPVHVLTREIVFAGML-----LLKFLPCKLVDFIVVMLSKMKFG 239
DL + A S+VVR VHVL +E++ LLK+ P +VD ++ +S++ G
Sbjct: 209 CLDLCNFNALPSLVVRDSVHVLPQEMLGISTFGISTSLLKWFPVHVVDRFLLRMSRLVLG 268
Query: 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGK 299
+ + GL RPK GP K G+TP +DVG + KIR G I+V+P + + EF +G+
Sbjct: 269 DTDRLGLVRPKLGPLERKIKCGKTPVLDVGTLAKIRSGHIKVYPELKRVMHYSAEFVDGR 328
Query: 300 IEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359
++ F+AII ATGYKS V WLK + F ++ G P + PN WKGE+GLY GF++ GL
Sbjct: 329 VDNFDAIILATGYKSNVPMWLKGVNM-FSEKDGFPHKPFPNGWKGESGLYAVGFTKLGLL 387
Query: 360 GISIDAKNIANDINL 374
G +IDAK IA DI +
Sbjct: 388 GAAIDAKKIAEDIEV 402
|
Involved in auxin biosynthesis. Required for the formation of floral organs and vascular tissues. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 381 | ||||||
| 255558458 | 380 | monooxygenase, putative [Ricinus communi | 0.992 | 0.994 | 0.667 | 1e-149 | |
| 255558456 | 386 | monooxygenase, putative [Ricinus communi | 0.984 | 0.971 | 0.658 | 1e-147 | |
| 224082384 | 381 | flavine-containing monoxygenase [Populus | 0.979 | 0.979 | 0.673 | 1e-146 | |
| 224134054 | 393 | flavine-containing monoxygenase [Populus | 0.997 | 0.966 | 0.653 | 1e-143 | |
| 225457837 | 379 | PREDICTED: flavin-containing monooxygena | 0.971 | 0.976 | 0.652 | 1e-141 | |
| 381216461 | 384 | YUC8 [Fragaria vesca] | 0.984 | 0.976 | 0.634 | 1e-141 | |
| 359492775 | 554 | PREDICTED: flavin-containing monooxygena | 0.981 | 0.675 | 0.637 | 1e-138 | |
| 449458145 | 386 | PREDICTED: putative flavin-containing mo | 0.984 | 0.971 | 0.617 | 1e-133 | |
| 356518593 | 400 | PREDICTED: putative flavin-containing mo | 0.968 | 0.922 | 0.620 | 1e-132 | |
| 356507614 | 401 | PREDICTED: putative flavin-containing mo | 0.979 | 0.930 | 0.613 | 1e-132 |
| >gi|255558458|ref|XP_002520254.1| monooxygenase, putative [Ricinus communis] gi|223540473|gb|EEF42040.1| monooxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/382 (66%), Positives = 311/382 (81%), Gaps = 4/382 (1%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
MEEV VVI+GAGPAGLATSACLN+L++PN++LEREDC ASLW+KRAYDR+KLHL KQFCE
Sbjct: 1 MEEV-VVIIGAGPAGLATSACLNHLNIPNLVLEREDCYASLWRKRAYDRLKLHLGKQFCE 59
Query: 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA 120
LPH+ FPS P F+P+ FI Y+DNYVS+ I RYHR VESA YDE AK W + A+NT
Sbjct: 60 LPHLSFPSDAPIFMPKNEFIAYLDNYVSRFDIKIRYHRYVESAFYDETAKKWCVEAENTE 119
Query: 121 LDAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCG 178
L+ E Y ++LVVATGEN GLIPEV GL SF G++MHS+KYENG +F GK+VLVVGCG
Sbjct: 120 LNVKEVYFVKFLVVATGENNQGLIPEVVGLNSFAGKWMHSNKYENGKEFAGKDVLVVGCG 179
Query: 179 NSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238
NSGMEI YDL++ GA S V R PVH++T+EIVF M LL++LPC+ VD IV+MLS +KF
Sbjct: 180 NSGMEIGYDLANYGANVSFVARSPVHIVTKEIVFLAMRLLEYLPCRFVDSIVLMLSDLKF 239
Query: 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENG 298
G+L KYGL++PK+GPFY KA+ G++PTIDVGAM+KI+ +IQV PSITSINR E++FENG
Sbjct: 240 GDLSKYGLKKPKEGPFYLKALNGRSPTIDVGAMEKIKSKQIQVLPSITSINRKEIKFENG 299
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
KI E++AIIFATGY STVR W K + D F++ GMPK+ P+HWKGENG+YCAGFS GL
Sbjct: 300 KINEYDAIIFATGYISTVRKWFKGGN-DLFNDNGMPKQRFPSHWKGENGIYCAGFSSRGL 358
Query: 359 HGISIDAKNIANDINLALTDHQ 380
GIS DA+NIAN INLAL+ +
Sbjct: 359 MGISNDARNIANHINLALSQNS 380
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558456|ref|XP_002520253.1| monooxygenase, putative [Ricinus communis] gi|223540472|gb|EEF42039.1| monooxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/378 (65%), Positives = 303/378 (80%), Gaps = 3/378 (0%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP 65
VVIVGAGPAGLATSACLN LS+PNI+LEREDC ASLWKKRAYDR+KLHLAKQ+C+LPHMP
Sbjct: 10 VVIVGAGPAGLATSACLNRLSIPNIVLEREDCYASLWKKRAYDRLKLHLAKQYCQLPHMP 69
Query: 66 FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE 125
+P TPTFVPR F++Y+D YVS+ +NP+Y++SVE A YD+ ++ W + + LD E
Sbjct: 70 YPPGTPTFVPRTDFVSYLDKYVSEFDVNPKYNKSVERAFYDQESENWRVEVNDICLDVCE 129
Query: 126 EYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGME 183
Y AR+LVVATGEN G +PE+PGL F G ++HS+KY G +F GK+VLVVGCGNSGME
Sbjct: 130 VYAARFLVVATGENSEGFVPEIPGLDGFGGMFIHSNKYVTGKQFNGKDVLVVGCGNSGME 189
Query: 184 IAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFK 243
IAYDLS+ GA TSIV R PVHVLT+E+VF GM LL FLPC LVD + VMLSK+K+G++
Sbjct: 190 IAYDLSNWGANTSIVARSPVHVLTKEMVFLGMNLLNFLPCDLVDSVAVMLSKLKYGDISN 249
Query: 244 YGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEF 303
YGL+RP +GPFY KA TG++PTIDVG MDKI+ GEI+V PS+T I N++EF N I +F
Sbjct: 250 YGLQRPTEGPFYLKAKTGRSPTIDVGTMDKIKNGEIKVMPSVTCIKGNKIEFANETINQF 309
Query: 304 EAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISI 363
+AIIFATGYKSTVR WL+ DKD F+E GMPK N PNHWKG+ GLYCAGF+R GL ISI
Sbjct: 310 DAIIFATGYKSTVRYWLE-GDKDLFNESGMPKGNFPNHWKGKRGLYCAGFARRGLLWISI 368
Query: 364 DAKNIANDINLALTDHQV 381
DA+NIA DI+L L ++
Sbjct: 369 DAQNIAKDIDLVLNQKEI 386
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082384|ref|XP_002306673.1| flavine-containing monoxygenase [Populus trichocarpa] gi|222856122|gb|EEE93669.1| flavine-containing monoxygenase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/377 (67%), Positives = 302/377 (80%), Gaps = 4/377 (1%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
MEEV VVI+GAGPAGLA+SACLN L +PNIILERE C ASLW+K+AYDR+KLHLAKQFCE
Sbjct: 1 MEEV-VVIIGAGPAGLASSACLNRLDIPNIILEREGCYASLWRKKAYDRVKLHLAKQFCE 59
Query: 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA 120
LP+M +P + P FVP+ FI+Y+DNY S GINPR+H VES YD+NA W IV +N
Sbjct: 60 LPYMSYPPKLPMFVPKNDFISYLDNYASHFGINPRFHCYVESVYYDKNASKWCIVVRNNK 119
Query: 121 LDAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCG 178
L+ E Y+A++LVVATGEN GLIP+VPGL FEG YMHSS+Y NG F GK+VLVVGCG
Sbjct: 120 LNTTEVYIAKFLVVATGENSEGLIPKVPGLDGFEGMYMHSSQYANGKDFNGKDVLVVGCG 179
Query: 179 NSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238
NSGMEIAYDL GA TSIV R PVHV+++EIVF GM LK+LPC+LVDFI LSK+KF
Sbjct: 180 NSGMEIAYDLLYWGAHTSIVARSPVHVISKEIVFLGMCFLKYLPCRLVDFIATTLSKIKF 239
Query: 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENG 298
G+ KYG++RP +GPFY KA TG++PTIDVGA+ KI+ GEIQVFPSI +I E+ FENG
Sbjct: 240 GDTSKYGIQRPTEGPFYIKAKTGRSPTIDVGAVQKIKTGEIQVFPSIANIEGTEITFENG 299
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
K ++++AIIFATGY+STV +WLK KD F+E GMPK PNHWKG NGLYCAGFSR+GL
Sbjct: 300 KSKQYDAIIFATGYRSTVLDWLKDG-KDLFNENGMPKLRFPNHWKGGNGLYCAGFSRSGL 358
Query: 359 HGISIDAKNIANDINLA 375
GIS+DA+ IA DI LA
Sbjct: 359 MGISLDAQQIATDIGLA 375
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134054|ref|XP_002327744.1| flavine-containing monoxygenase [Populus trichocarpa] gi|222836829|gb|EEE75222.1| flavine-containing monoxygenase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/384 (65%), Positives = 305/384 (79%), Gaps = 4/384 (1%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
ME V VVIVGAGPAGLATSACLN LS+PNI+LEREDC ASLW+KRAYDR+KLHLAK++CE
Sbjct: 1 MEAVDVVIVGAGPAGLATSACLNRLSIPNIVLEREDCYASLWQKRAYDRLKLHLAKEYCE 60
Query: 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA 120
LP MPFPS PTFVPR FI+Y+ +YVS INPR + +VESA +DE + W I AK
Sbjct: 61 LPFMPFPSDAPTFVPRRGFIDYLHSYVSHFRINPRCNTAVESAYHDEESGKWHIKAKKAD 120
Query: 121 LDAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCG 178
L+ +EEYVA++LVVATGEN G IPEV GL SF GE++HSSKYEN K+ GK VLVVGCG
Sbjct: 121 LNVHEEYVAKFLVVATGENSKGFIPEVSGLDSFGGEFIHSSKYENSQKYKGKAVLVVGCG 180
Query: 179 NSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKF-LPCKLVDFIVVMLSKMK 237
NSGMEIAYDLS+ G TSIV R PVHVLT IV+ GM LL + +PC +VDFIVV+LSK++
Sbjct: 181 NSGMEIAYDLSNWGVKTSIVARSPVHVLTTNIVYIGMRLLSYGVPCNIVDFIVVLLSKLQ 240
Query: 238 FGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFEN 297
G++ YG RP +GPFY K G+TPTIDVGA++KIR+ E+QVFPSI I +++EF N
Sbjct: 241 HGDISNYGFPRPTRGPFYIKQRVGRTPTIDVGAVEKIRRKEVQVFPSIRGIQGSKIEFAN 300
Query: 298 GKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357
G++++F+AIIFATGYKSTVR+WLK +D FD GMPK PN WKG+NGLYC+GF+R G
Sbjct: 301 GEVKQFDAIIFATGYKSTVRHWLK-GGQDLFDGSGMPKLCFPNIWKGKNGLYCSGFARRG 359
Query: 358 LHGISIDAKNIANDINLALTDHQV 381
L GIS+D++NIA DI+LAL +V
Sbjct: 360 LFGISVDSQNIAKDIDLALRSERV 383
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457837|ref|XP_002278987.1| PREDICTED: flavin-containing monooxygenase YUCCA10 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/374 (65%), Positives = 296/374 (79%), Gaps = 4/374 (1%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
MEEV V+IVGAGP+GLATSACLN LS+PNIILEREDC ASLWKKR+YDR+KLHL KQFC+
Sbjct: 1 MEEV-VIIVGAGPSGLATSACLNVLSIPNIILEREDCFASLWKKRSYDRLKLHLGKQFCQ 59
Query: 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA 120
LPHMP+P TPTF+P+ F+ Y+++YVS INPRYHR VESASYD+ W IVAKNT
Sbjct: 60 LPHMPYPPGTPTFIPKAGFLQYLEDYVSHFQINPRYHRFVESASYDKVVGKWHIVAKNTL 119
Query: 121 LDAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCG 178
D E Y+ ++LVVATGEN GLIP++PGL SF GE+MH S Y+NG +F K VLVVGCG
Sbjct: 120 SDELEVYLGKFLVVATGENSEGLIPKIPGLDSFGGEFMHCSDYKNGKRFTNKEVLVVGCG 179
Query: 179 NSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238
NSGMEIAYDL GA TSIVVR PVHV+T+E+V GMLLLK++PCK+VD++ V LSK+ +
Sbjct: 180 NSGMEIAYDLWDHGAITSIVVRNPVHVVTKEMVLLGMLLLKYIPCKVVDYVTVSLSKLIY 239
Query: 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENG 298
G+L YGL RP +GPFY K +T +P IDVG + KI++GEIQV P+IT I + V F NG
Sbjct: 240 GDLSSYGLPRPSEGPFYLKDVTRSSPVIDVGTIGKIKEGEIQVVPTITKIEGDNVYFSNG 299
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
K+ F+AIIFATGYKSTV WLK ++ D F+E GMPK++ PNHW GENGLYC GF+ GL
Sbjct: 300 KMNRFDAIIFATGYKSTVLKWLKESE-DLFNEDGMPKKSFPNHWNGENGLYCVGFASRGL 358
Query: 359 HGISIDAKNIANDI 372
GI+ DA++IAN I
Sbjct: 359 FGIARDAEHIANHI 372
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|381216461|gb|AFG16921.1| YUC8 [Fragaria vesca] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/378 (63%), Positives = 298/378 (78%), Gaps = 3/378 (0%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
MEEV VVI+GAGPAGLATSACLN L++ N++LEREDC ASLWK R+YDR+KLHLAKQFCE
Sbjct: 1 MEEVDVVIIGAGPAGLATSACLNRLNISNVMLEREDCCASLWKNRSYDRLKLHLAKQFCE 60
Query: 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA 120
LP+MPFP TPT+VPR FI Y+D YVS INP YHRSVE+AS+DE+ W ++ NT
Sbjct: 61 LPYMPFPENTPTYVPRKEFIQYLDTYVSTFKINPLYHRSVETASFDEDVGKWCVLVNNTE 120
Query: 121 LDAYEEYVARYLVVATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCG 178
L E Y A++LV ATGENG +PE GLGSF+GE +HSS+Y NG K+ GKNVLVVG G
Sbjct: 121 LGVQESYYAKFLVAATGENGEGYLPETNGLGSFKGEIIHSSEYGNGNKYRGKNVLVVGSG 180
Query: 179 NSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238
NSGMEIAYDLS+ GA TSIV+R VHVLT+EIVF GM+L K++P +VD IV+ L+K+KF
Sbjct: 181 NSGMEIAYDLSNSGANTSIVIRSSVHVLTKEIVFIGMVLSKYVPIMVVDGIVMFLTKLKF 240
Query: 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENG 298
GNL KYG++ PK GPF+ K G +P IDVG + KI+ G+IQV PSIT+I NE+ FENG
Sbjct: 241 GNLSKYGIQNPKMGPFHIKQNEGHSPIIDVGTIKKIKSGDIQVLPSITNIEGNEIRFENG 300
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
++ ++AI+FATGYKSTV WLK + + F + GMPK++ PNHWK +NGLYCAGFS+ GL
Sbjct: 301 YLKWYDAIVFATGYKSTVLKWLKD-ENNLFGDNGMPKKSFPNHWKSQNGLYCAGFSKRGL 359
Query: 359 HGISIDAKNIANDINLAL 376
GIS DA++I+NDI+ +L
Sbjct: 360 FGISYDAQHISNDISFSL 377
|
Source: Fragaria vesca Species: Fragaria vesca Genus: Fragaria Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492775|ref|XP_002278793.2| PREDICTED: flavin-containing monooxygenase YUCCA10 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/378 (63%), Positives = 296/378 (78%), Gaps = 4/378 (1%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
MEEV V+IVGAGP+GLATSACLN LS+PNIILERED ASLWKKR+YDR+KLHL KQFC+
Sbjct: 176 MEEV-VIIVGAGPSGLATSACLNVLSIPNIILEREDFFASLWKKRSYDRLKLHLGKQFCQ 234
Query: 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA 120
LPHMP P TPTF+P+ F+ Y+++YVS INPRYHR VESASYD+ A W IVAKNT
Sbjct: 235 LPHMPSPPGTPTFIPKARFLRYLEDYVSHFQINPRYHRLVESASYDKVAAKWHIVAKNTL 294
Query: 121 LDAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCG 178
D E Y+ ++LVVATGEN GLIP++PGL SF GE+MH SKY+NG +F K VLVVGCG
Sbjct: 295 SDESEVYLGKFLVVATGENSEGLIPKIPGLDSFGGEFMHCSKYKNGKRFADKEVLVVGCG 354
Query: 179 NSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238
NSGMEIAYDL GA T IVVR P HV+T+E+V GM LLK++P K+VD+++V L+K+ +
Sbjct: 355 NSGMEIAYDLWDRGAKTCIVVRSPKHVVTKEMVLLGMFLLKYVPRKVVDYVIVSLAKLNY 414
Query: 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENG 298
G+L YGL RPK+GPFY K +T P +DVG + KI++GEIQV P++T I V F NG
Sbjct: 415 GDLSNYGLPRPKEGPFYLKDVTRSPPIVDVGTIGKIKEGEIQVVPAVTKIEGQYVYFSNG 474
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
K+ +F+AIIFATGYKSTV WL+ D++ F+E GMPK+N PNHW GENGLYC GF+ GL
Sbjct: 475 KMNQFDAIIFATGYKSTVLKWLQ-DDENLFNEDGMPKKNFPNHWNGENGLYCVGFASRGL 533
Query: 359 HGISIDAKNIANDINLAL 376
GI+ DA++IAN IN A+
Sbjct: 534 FGIARDAEHIANHINGAV 551
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458145|ref|XP_004146808.1| PREDICTED: putative flavin-containing monooxygenase YUCCA11-like [Cucumis sativus] gi|449526357|ref|XP_004170180.1| PREDICTED: putative flavin-containing monooxygenase YUCCA11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/379 (61%), Positives = 293/379 (77%), Gaps = 4/379 (1%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
MEE V++VGAGPAGLATSACLN LS+ NI+LER+DCSASLW+KRAYDR+KLHLAK +C
Sbjct: 1 MEETQVIVVGAGPAGLATSACLNRLSIQNIVLERDDCSASLWRKRAYDRLKLHLAKNYCN 60
Query: 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA 120
LP+MPFP PT++ R+ FI Y+D Y+S GI PR R+VE A Y++ + W +V +NT+
Sbjct: 61 LPYMPFPDNAPTYISRVDFIKYLDEYMSSFGIQPRCCRTVEEAWYEKEEERWKVVVENTS 120
Query: 121 LDAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCG 178
E YV ++LV ATGEN G +P +PGL SF GE +HSS Y+NG +F GK+VLVVGCG
Sbjct: 121 SGEQERYVCKFLVAATGENCEGFLPNIPGLESFNGEVLHSSGYDNGQRFRGKDVLVVGCG 180
Query: 179 NSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238
NSGMEIAYDLS+ A TSIVVR PVHVLT++IV GM LLK+ PC +VD I + L+K+K+
Sbjct: 181 NSGMEIAYDLSNHAANTSIVVRSPVHVLTKDIVRLGMFLLKYFPCNVVDSISINLAKLKY 240
Query: 239 GNLFKYGLERPKK-GPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFEN 297
G+ KYG++RP+ GPF K+ TG++PTIDVG M +IR GE++VFPSIT I R++V F
Sbjct: 241 GDYSKYGIQRPRAGGPFLIKSKTGRSPTIDVGCMKRIRTGEVKVFPSITCIKRDQVRFAY 300
Query: 298 GKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357
G + F+AIIFATGYKSTV NWL+ +K+ F+E GMP+ PNHWKGENGLYCAGF + G
Sbjct: 301 GIVNCFDAIIFATGYKSTVINWLQ-DEKNHFNENGMPRERFPNHWKGENGLYCAGFGQQG 359
Query: 358 LHGISIDAKNIANDINLAL 376
L GIS DAK IA DI+LAL
Sbjct: 360 LFGISNDAKKIATDISLAL 378
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518593|ref|XP_003527963.1| PREDICTED: putative flavin-containing monooxygenase YUCCA11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/374 (62%), Positives = 292/374 (78%), Gaps = 5/374 (1%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELP 62
EVPVVIVGAGPAGLAT+ACLN S+PN++LER+DC ASLW+KRAYDR+KLHL K FC LP
Sbjct: 4 EVPVVIVGAGPAGLATAACLNKYSIPNVVLERDDCHASLWRKRAYDRLKLHLGKDFCNLP 63
Query: 63 HMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE-NAKAWIIVAKNTAL 121
HMPFP PTFVPR+ F+ Y+DNYV++ I+ RY+R+VESAS DE N W +V K+T
Sbjct: 64 HMPFPPDFPTFVPRVDFLRYLDNYVTRFKISIRYNRNVESASMDEQNNGKWRVVVKDTTT 123
Query: 122 DAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGN 179
+A E YVA YLVVATGEN G +P++ GL FEG++MH S+Y NG GK+VLVVGCGN
Sbjct: 124 NADEVYVANYLVVATGENSEGYVPQIEGLEGFEGKHMHCSEYLNGRDLYGKHVLVVGCGN 183
Query: 180 SGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239
SGMEIAYDLS+ GA TSIVVRGPVH T+E+V+ GM LLK+ + VD +++++SK+K+G
Sbjct: 184 SGMEIAYDLSNWGANTSIVVRGPVHYFTKEMVYVGMSLLKYFKIEKVDKLMLLMSKLKYG 243
Query: 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNE-VEFENG 298
++ YGL RPK GPF+ K G TPTIDVG + +I+KGE++VFP+I+SI ++ +EFE+G
Sbjct: 244 DMSNYGLIRPKDGPFFLKKKGGTTPTIDVGCVSRIKKGEVKVFPAISSIKEDKLIEFEDG 303
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
+ +F+ IIFATGY STV WLK + F+E GMPK + PNHWKGENG+YCAGFSR GL
Sbjct: 304 QNGQFDVIIFATGYNSTVLKWLKDY-RGLFNENGMPKPDFPNHWKGENGIYCAGFSRRGL 362
Query: 359 HGISIDAKNIANDI 372
GI+ DAK IA DI
Sbjct: 363 DGIAFDAKRIAADI 376
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507614|ref|XP_003522559.1| PREDICTED: putative flavin-containing monooxygenase YUCCA11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/378 (61%), Positives = 291/378 (76%), Gaps = 5/378 (1%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELP 62
EVPVVIVGAGPAGLAT+ACLN S+PN++LER DC ASLW+KR YDR+KLHL K FC LP
Sbjct: 4 EVPVVIVGAGPAGLATAACLNKYSIPNVVLERHDCHASLWRKRTYDRLKLHLGKDFCNLP 63
Query: 63 HMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE-NAKAWIIVAKNTAL 121
HMPFP PTFVPR+ F+ Y+DNYV++ I+ RY R+VESAS DE N W +V K+T
Sbjct: 64 HMPFPLDFPTFVPRVDFLRYLDNYVTRFKISIRYTRNVESASVDEENNGKWRVVVKDTTT 123
Query: 122 DAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGN 179
+A E YVA YLVVATGEN G +P++ GL FEGE+MH S+Y NG GKNVLVVG GN
Sbjct: 124 NADEVYVADYLVVATGENDEGYVPQIEGLEGFEGEHMHCSQYLNGRHLYGKNVLVVGSGN 183
Query: 180 SGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239
SGMEIAYDLS+ GA TSIV+RGPVH T+E+VF GM LLK+ + VD +++++SK+K+G
Sbjct: 184 SGMEIAYDLSTWGANTSIVIRGPVHYFTKEMVFVGMSLLKYFKMEKVDKLMLLMSKLKYG 243
Query: 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNE-VEFENG 298
++ +YGL RPK GPF+ K G TPTIDVG + +I+KGE++VFP+I+SI +++ VEFE+G
Sbjct: 244 DMSEYGLVRPKDGPFFLKIKGGTTPTIDVGCVSRIKKGEVKVFPAISSIKKDKMVEFEDG 303
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358
+ +F+ IIFATGY STV WLK + F+E GMPK + PNHWKG NG+YCAGFSR GL
Sbjct: 304 QNGQFDVIIFATGYNSTVLKWLKDY-RGLFNENGMPKPSFPNHWKGNNGIYCAGFSRRGL 362
Query: 359 HGISIDAKNIANDINLAL 376
GI+ DA+ IA+DI L
Sbjct: 363 DGIAFDAQRIADDIKKTL 380
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 381 | ||||||
| TAIR|locus:2026967 | 391 | YUC11 "AT1G21430" [Arabidopsis | 0.929 | 0.905 | 0.597 | 4.5e-114 | |
| TAIR|locus:2028558 | 383 | YUC10 "AT1G48910" [Arabidopsis | 0.942 | 0.937 | 0.545 | 9.8e-103 | |
| TAIR|locus:2020250 | 421 | YUC9 "AT1G04180" [Arabidopsis | 0.923 | 0.836 | 0.480 | 9e-93 | |
| TAIR|locus:2149524 | 424 | YUC5 "AT5G43890" [Arabidopsis | 0.931 | 0.837 | 0.486 | 1.3e-91 | |
| TAIR|locus:2117783 | 426 | YUC8 "AT4G28720" [Arabidopsis | 0.931 | 0.833 | 0.474 | 1.1e-89 | |
| TAIR|locus:2197863 | 437 | YUC3 "YUCCA 3" [Arabidopsis th | 0.931 | 0.812 | 0.468 | 5.9e-89 | |
| TAIR|locus:2147962 | 411 | YUC4 "AT5G11320" [Arabidopsis | 0.916 | 0.849 | 0.480 | 1.3e-86 | |
| TAIR|locus:2119340 | 415 | YUC2 "YUCCA2" [Arabidopsis tha | 0.939 | 0.862 | 0.445 | 3.9e-83 | |
| TAIR|locus:2131322 | 414 | YUC1 "YUCCA 1" [Arabidopsis th | 0.918 | 0.845 | 0.457 | 8.2e-83 | |
| TAIR|locus:2046545 | 431 | YUC7 "AT2G33230" [Arabidopsis | 0.929 | 0.821 | 0.427 | 9.7e-80 |
| TAIR|locus:2026967 YUC11 "AT1G21430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 217/363 (59%), Positives = 277/363 (76%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LATSACLN L++PNI++ER+ CSASLWK+R+YDR+KLHLAKQFC+LPHMPFPS TPTFV
Sbjct: 19 LATSACLNRLNIPNIVVERDVCSASLWKRRSYDRLKLHLAKQFCQLPHMPFPSNTPTFVS 78
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWII--VAKNTALDAYEEYVARYLV 133
++ FINY+D Y ++ +NPRY+R+V+SA + + WI+ V K TAL E Y A+++V
Sbjct: 79 KLGFINYLDEYATRFNVNPRYNRNVKSAYFKDGQ--WIVKVVNKTTAL--IEVYSAKFMV 134
Query: 134 VATGENG--LIPEVPGL-GSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSS 190
ATGENG +IPE+PGL SF+G+Y+HSS+Y+NG KF GK+VLVVGCGNSGMEIAYDLS
Sbjct: 135 AATGENGEGVIPEIPGLVESFQGKYLHSSEYKNGEKFAGKDVLVVGCGNSGMEIAYDLSK 194
Query: 191 CGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPK 250
C A SIVVR VHVLTR IV GM LL+F P KLVD + ++L++++F N +YGL RP
Sbjct: 195 CNANVSIVVRSQVHVLTRCIVRIGMSLLRFFPVKLVDRLCLLLAELRFRNTSRYGLVRPN 254
Query: 251 KGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFAT 310
GPF K ITG++ TIDVG + +I+ G+IQV SI I VEF +G + ++I+FAT
Sbjct: 255 NGPFLNKLITGRSATIDVGCVGEIKSGKIQVVTSIKRIEGKTVEFIDGNTKNVDSIVFAT 314
Query: 311 GYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDAKNIAN 370
GYKS+V WL+ D D F+E GMPKR P+HWKG+NGLY AGF + GL GIS DA+NIA
Sbjct: 315 GYKSSVSKWLEVDDGDLFNENGMPKREFPDHWKGKNGLYSAGFGKQGLAGISRDARNIAR 374
Query: 371 DIN 373
DI+
Sbjct: 375 DID 377
|
|
| TAIR|locus:2028558 YUC10 "AT1G48910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
Identities = 199/365 (54%), Positives = 264/365 (72%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LATS CLN S+PN+ILE+ED ASLWKKRAYDR+KLHLAK+FC+LP MP PTF+
Sbjct: 15 LATSVCLNQHSIPNVILEKEDIYASLWKKRAYDRLKLHLAKEFCQLPFMPHGREVPTFMS 74
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
+ F+NY+D YV++ INPRY+R+V+S+++DE+ W +VA+NT E Y + +LVVA
Sbjct: 75 KELFVNYLDAYVARFDINPRYNRTVKSSTFDESNNKWRVVAENTVTGETEVYWSEFLVVA 134
Query: 136 TGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA 193
TGENG IP V G+ +F GE MHSS+Y++G F KNVLVVG GNSGMEI++DL + GA
Sbjct: 135 TGENGDGNIPMVEGIDTFGGEIMHSSEYKSGRDFKDKNVLVVGGGNSGMEISFDLCNFGA 194
Query: 194 CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGP 253
T+I++R P HV+T+E++ GM LLK+ P +VD +V ++K+ +G+L KYGL RPK+GP
Sbjct: 195 NTTILIRTPRHVVTKEVIHLGMTLLKYAPVAMVDTLVTTMAKILYGDLSKYGLFRPKQGP 254
Query: 254 FYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRNEVEFENGKIEEFEAIIFATGY 312
F K TG+ P IDVG ++KIR GEIQV I SIN + FENG ++F+AI+FATGY
Sbjct: 255 FATKLFTGKAPVIDVGTVEKIRDGEIQVINGGIGSINGKTLTFENGHKQDFDAIVFATGY 314
Query: 313 KSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDAKNIAND 371
KS+V NWL+ D ++ + G PK P HWKGE LYCAGFSR G+ G + DA ++A+D
Sbjct: 315 KSSVCNWLE--DYEYVMKKDGFPKAPMPKHWKGEKNLYCAGFSRKGIAGGAEDAMSVADD 372
Query: 372 INLAL 376
I L
Sbjct: 373 IRSIL 377
|
|
| TAIR|locus:2020250 YUC9 "AT1G04180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 176/366 (48%), Positives = 261/366 (71%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LAT+ACL++ VP +++ER DC ASLW+KR YDR+KLHL K+FC+LP MPFP P +
Sbjct: 35 LATAACLHDQGVPFVVVERSDCIASLWQKRTYDRLKLHLPKKFCQLPKMPFPDHYPEYPT 94
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE-EYVARYLVV 134
+ FI+Y+++Y ++ I P +++SVESA +DE + W + T D E EY+ R+LVV
Sbjct: 95 KRQFIDYLESYANRFDIKPEFNKSVESARFDETSGLWRV---RTTSDGEEMEYICRWLVV 151
Query: 135 ATGENG--LIPEVPGLGS-FEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSC 191
ATGEN ++PE+ GL + F+GE +H+ +Y++G KF GK VLVVGCGNSGME++ DL++
Sbjct: 152 ATGENAERVVPEINGLMTEFDGEVIHACEYKSGEKFRGKRVLVVGCGNSGMEVSLDLANH 211
Query: 192 GACTSIVVRGPVHVLTREIV----FA-GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246
A TS+VVR VHVL REI+ F ++++K+LP LVD ++++LS + G+L YGL
Sbjct: 212 NAITSMVVRSSVHVLPREIMGKSTFGISVMMMKWLPLWLVDKLLLILSWLVLGSLSNYGL 271
Query: 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAI 306
+RP GP K++TG+TP +D+GA++KI+ G++++ P+I +R+ VE +G+ + +A+
Sbjct: 272 KRPDIGPMELKSMTGKTPVLDIGALEKIKSGDVEIVPAIKQFSRHHVELVDGQKLDIDAV 331
Query: 307 IFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDAK 366
+ ATGY+S V +WL+ + +FF + G PK PN WKG++GLY AGF+R GL G S+DA
Sbjct: 332 VLATGYRSNVPSWLQ--ESEFFSKNGFPKSPFPNAWKGKSGLYAAGFTRKGLAGASVDAV 389
Query: 367 NIANDI 372
NIA DI
Sbjct: 390 NIAQDI 395
|
|
| TAIR|locus:2149524 YUC5 "AT5G43890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 178/366 (48%), Positives = 253/366 (69%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LAT+ACL VP ++LER DC ASLW+KR YDR+KLHL K+ C+LP MPFP P +
Sbjct: 35 LATAACLREEGVPFVVLERADCIASLWQKRTYDRIKLHLPKKVCQLPKMPFPEDYPEYPT 94
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE-EYVARYLVV 134
+ FI Y+++Y ++ I P+++ V+SA YDE + W I +++ E EY+ R+LVV
Sbjct: 95 KRQFIEYLESYANKFEITPQFNECVQSARYDETSGLWRIKTTSSSSSGSEMEYICRWLVV 154
Query: 135 ATGENG--LIPEVPGLGS-FEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSC 191
ATGEN ++PE+ GL + FEGE +HS +Y++G K+ GK+VLVVGCGNSGME++ DL++
Sbjct: 155 ATGENAEKVVPEIDGLTTEFEGEVIHSCEYKSGEKYRGKSVLVVGCGNSGMEVSLDLANH 214
Query: 192 GACTSIVVRGPVHVLTREIV----FA-GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246
A S+VVR VHVL REI+ F M+L+K+ P LVD I+++L+ + GNL KYGL
Sbjct: 215 NANASMVVRSSVHVLPREILGKSSFEISMMLMKWFPLWLVDKILLILAWLILGNLTKYGL 274
Query: 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAI 306
+RP GP K ++G+TP +D+GAM+KI+ GE+++ P I +R+ VE +G+ + +A+
Sbjct: 275 KRPTMGPMELKIVSGKTPVLDIGAMEKIKSGEVEIVPGIKRFSRSHVELVDGQRLDLDAV 334
Query: 307 IFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDAK 366
+ ATGY+S V +WL+ + D F + G PK PN WKG++GLY AGF+R GL G S DA
Sbjct: 335 VLATGYRSNVPSWLQ--ENDLFSKNGFPKSPFPNAWKGKSGLYAAGFTRKGLAGASADAV 392
Query: 367 NIANDI 372
NIA DI
Sbjct: 393 NIAQDI 398
|
|
| TAIR|locus:2117783 YUC8 "AT4G28720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 174/367 (47%), Positives = 251/367 (68%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LAT+ACL+ +VP ++LER DC ASLW+KR YDR+KLHL KQFC+LP MPFP P +
Sbjct: 35 LATAACLHEQNVPFVVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKMPFPEDFPEYPT 94
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWII--VAKNTALDAYEEYVARYLV 133
+ FI+Y+++Y ++ INP+++ V++A +DE + W + V+K+ + EY+ R+LV
Sbjct: 95 KRQFIDYLESYATRFEINPKFNECVQTARFDETSGLWRVKTVSKSESTQTEVEYICRWLV 154
Query: 134 VATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSC 191
VATGEN ++PE+ GL F GE +H+ Y++G KF GK VLVVGCGNSGME++ DL++
Sbjct: 155 VATGENAERVMPEIDGLSEFSGEVIHACDYKSGEKFAGKKVLVVGCGNSGMEVSLDLANH 214
Query: 192 GACTSIVVRGPVHVLTREIV----FA-GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246
A S+VVR +HV+ RE++ F M +L++ P LVD I+++LS M GN+ KYGL
Sbjct: 215 FAKPSMVVRSSLHVMPREVMGKSTFELAMKMLRWFPLWLVDKILLVLSWMVLGNIEKYGL 274
Query: 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAI 306
+RP+ GP K++ G+TP +D+GA++KIR G+I V P I N N+VE NG+ + +++
Sbjct: 275 KRPEMGPMELKSVKGKTPVLDIGAIEKIRLGKINVVPGIKRFNGNKVELVNGEQLDVDSV 334
Query: 307 IFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNH-WKGENGLYCAGFSRTGLHGISIDA 365
+ ATGY+S V WL+ + +FF + G PK N+ WKG GLY GF+R GL G S+DA
Sbjct: 335 VLATGYRSNVPYWLQ--ENEFFAKNGFPKTVADNNGWKGRTGLYAVGFTRKGLSGASMDA 392
Query: 366 KNIANDI 372
IA DI
Sbjct: 393 VKIAQDI 399
|
|
| TAIR|locus:2197863 YUC3 "YUCCA 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 172/367 (46%), Positives = 245/367 (66%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LA +A L VP IILER +C ASLW+ R YDR+KLHL KQFC+LP+ PFP P +
Sbjct: 47 LAVAAGLKREGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNYPFPDEFPEYPT 106
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWII--VAKNTALDAYE-EYVARYL 132
+ FI Y+++Y + INP+++ +V+SA YDE W + ++ L + E EY+ R++
Sbjct: 107 KFQFIQYLESYAANFDINPKFNETVQSAKYDETFGLWRVKTISNMGQLGSCEFEYICRWI 166
Query: 133 VVATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSS 190
VVATGEN ++P+ GL F G+ +H+ Y++GG++ GK VLVVGCGNSGME++ DL +
Sbjct: 167 VVATGENAEKVVPDFEGLEDFGGDVLHAGDYKSGGRYQGKKVLVVGCGNSGMEVSLDLYN 226
Query: 191 CGACTSIVVRGPVHVLTREI----VFA-GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYG 245
GA S+VVR VHVL REI F G+ ++K++P L D ++ L+++ GN KYG
Sbjct: 227 HGANPSMVVRSAVHVLPREIFGKSTFELGVTMMKYMPVWLADKTILFLARIILGNTDKYG 286
Query: 246 LERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEA 305
L+RPK GP K G+TP +D+GA+ KIR G+I++ P I + +VE +G++ E ++
Sbjct: 287 LKRPKIGPLELKNKEGKTPVLDIGALPKIRSGKIKIVPGIIKFGKGKVELIDGRVLEIDS 346
Query: 306 IIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDA 365
+I ATGY+S V +WLK D DFF + G+PK PN WKGE GLY GF+R GL G S+DA
Sbjct: 347 VILATGYRSNVPSWLK--DNDFFSDDGIPKNPFPNGWKGEAGLYAVGFTRKGLFGASLDA 404
Query: 366 KNIANDI 372
++A+DI
Sbjct: 405 MSVAHDI 411
|
|
| TAIR|locus:2147962 YUC4 "AT5G11320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 175/364 (48%), Positives = 232/364 (63%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LA +ACL+N VP++ILER DC ASLW+KR YDR+KLHL K FCELP MPFP P +
Sbjct: 27 LAVAACLSNRGVPSVILERTDCLASLWQKRTYDRLKLHLPKHFCELPLMPFPKNFPKYPS 86
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
+ FI+YV++Y ++ I P ++++VE A +D+ + W + ++ Y + +LVVA
Sbjct: 87 KQLFISYVESYAARFNIKPVFNQTVEKAEFDDASGLWNVKTQDGV------YTSTWLVVA 140
Query: 136 TGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA 193
TGEN + P +PGL F G +H+S Y++G F + VLVVGCGNSGME++ DL A
Sbjct: 141 TGENAEPVFPNIPGLKKFTGPVVHTSAYKSGSAFANRKVLVVGCGNSGMEVSLDLCRYNA 200
Query: 194 CTSIVVRGPVHVLTREI----VFA-GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248
+VVR VHVL R+ F M LLK+ P KLVD +++L+ GN GL R
Sbjct: 201 LPHMVVRNSVHVLPRDFFGLSTFGIAMTLLKWFPLKLVDKFLLLLANSTLGNTDLLGLRR 260
Query: 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIF 308
PK GP K +TG+TP +DVGA+ IR G+I+V ++ I RN +F NGK EF++II
Sbjct: 261 PKTGPIELKNVTGKTPVLDVGAISLIRSGQIKVTQAVKEITRNGAKFLNGKEIEFDSIIL 320
Query: 309 ATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDAKNI 368
ATGYKS V +WLK + FF + GMPK PN WKGE GLY GF+R GL G + DA I
Sbjct: 321 ATGYKSNVPDWLK--ENSFFTKEGMPKTPFPNGWKGEKGLYTVGFTRRGLSGTAYDAVKI 378
Query: 369 ANDI 372
A DI
Sbjct: 379 AEDI 382
|
|
| TAIR|locus:2119340 YUC2 "YUCCA2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 163/366 (44%), Positives = 232/366 (63%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LAT+ACL + +P++ILER C ASLW+ + YDR++LHL K FCELP MPFPS PT+
Sbjct: 38 LATAACLKSRDIPSLILERSTCIASLWQHKTYDRLRLHLPKDFCELPLMPFPSSYPTYPT 97
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
+ F+ Y+++Y + P ++++VE A +D W + D EYV+R+LVVA
Sbjct: 98 KQQFVQYLESYAEHFDLKPVFNQTVEEAKFDRRCGLWRVRTTGGKKDETMEYVSRWLVVA 157
Query: 136 TGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA 193
TGEN ++PE+ G+ F G +H+S Y++G F K +LVVGCGNSGME+ DL + A
Sbjct: 158 TGENAEEVMPEIDGIPDFGGPILHTSSYKSGEIFSEKKILVVGCGNSGMEVCLDLCNFNA 217
Query: 194 CTSIVVRGPVHVLTREIV----FA-GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248
S+VVR VHVL +E++ F LLK+ P +VD ++ +S++ G+ + GL R
Sbjct: 218 LPSLVVRDSVHVLPQEMLGISTFGISTSLLKWFPVHVVDRFLLRMSRLVLGDTDRLGLVR 277
Query: 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIF 308
PK GP K G+TP +DVG + KIR G I+V+P + + EF +G+++ F+AII
Sbjct: 278 PKLGPLERKIKCGKTPVLDVGTLAKIRSGHIKVYPELKRVMHYSAEFVDGRVDNFDAIIL 337
Query: 309 ATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDAKNI 368
ATGYKS V WLK + F ++ G P + PN WKGE+GLY GF++ GL G +IDAK I
Sbjct: 338 ATGYKSNVPMWLKGVNM-FSEKDGFPHKPFPNGWKGESGLYAVGFTKLGLLGAAIDAKKI 396
Query: 369 ANDINL 374
A DI +
Sbjct: 397 AEDIEV 402
|
|
| TAIR|locus:2131322 YUC1 "YUCCA 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 167/365 (45%), Positives = 237/365 (64%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LATSACL++ VP++ILER D ASLWK + YDR++LHL K FC LP + FP P +
Sbjct: 31 LATSACLSSRGVPSLILERSDSIASLWKSKTYDRLRLHLPKHFCRLPLLDFPEYYPKYPS 90
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135
+ F+ Y+++Y S I PR++++V++A+YD ++ W + + EY++++L+VA
Sbjct: 91 KNEFLAYLESYASHFRIAPRFNKNVQNAAYDSSSGFWRVKTHDNT-----EYLSKWLIVA 145
Query: 136 TGENG--LIPEVPGLGSFEG-EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCG 192
TGEN PE+PG F G + +H+S+Y++G +F + VLVVGCGNSGMEI+ DL
Sbjct: 146 TGENADPYFPEIPGRKKFSGGKIVHASEYKSGEEFRRQKVLVVGCGNSGMEISLDLVRHN 205
Query: 193 ACTSIVVRGPVHVLTREIV----FA-GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247
A +VVR VHVL REI+ F GM LLK LP +LVD +++++ + FGN + GL
Sbjct: 206 ASPHLVVRNTVHVLPREILGVSTFGVGMTLLKCLPLRLVDKFLLLMANLSFGNTDRLGLR 265
Query: 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAII 307
RPK GP K +TG++P +DVGAM IR G IQ+ + I + +F +G+ ++F++II
Sbjct: 266 RPKTGPLELKNVTGKSPVLDVGAMSLIRSGMIQIMEGVKEITKKGAKFMDGQEKDFDSII 325
Query: 308 FATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDAKN 367
FATGYKS V WL+ D FF + GMPK PN W+G GLY GF+R GL G + DA
Sbjct: 326 FATGYKSNVPTWLQGGD--FFTDDGMPKTPFPNGWRGGKGLYTVGFTRRGLLGTASDAVK 383
Query: 368 IANDI 372
IA +I
Sbjct: 384 IAGEI 388
|
|
| TAIR|locus:2046545 YUC7 "AT2G33230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 157/367 (42%), Positives = 235/367 (64%)
Query: 16 LATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75
LA +A L VP +ILER +C ASLW+ R YDR+KLHL KQFC+LP++PFP P +
Sbjct: 42 LAVAADLKRQEVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQLPNLPFPEDIPEYPT 101
Query: 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWII--VAKNTALDAYE-EYVARYL 132
+ FI Y+++Y + + P+++ +V+SA YD+ W + V ++ L E EY+ R+L
Sbjct: 102 KYQFIEYLESYATHFDLRPKFNETVQSAKYDKRFGLWRVQTVLRSELLGYCEFEYICRWL 161
Query: 133 VVATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSS 190
VVATGEN ++PE GL F G+ +H+ Y++G ++ GK VLVVGCGNSGME++ DL +
Sbjct: 162 VVATGENAEKVVPEFEGLEDFGGDVLHAGDYKSGERYRGKRVLVVGCGNSGMEVSLDLCN 221
Query: 191 CGACTSIVVRGPVHVLTREIV----FA-GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYG 245
A S+VVR VHVL RE++ F + ++K++P LVD +++L+++ GN KYG
Sbjct: 222 HDASPSMVVRSSVHVLPREVLGKSTFELSVTMMKWMPVWLVDKTLLVLTRLLLGNTDKYG 281
Query: 246 LERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEA 305
L+RP+ GP K G+TP +D+GA+ I+ G+I++ I +VE +G++ + ++
Sbjct: 282 LKRPEIGPLELKNTAGKTPVLDIGAISMIKSGKIKIVAGIAKFGPGKVELVDGRVLQIDS 341
Query: 306 IIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLHGISIDA 365
+I ATGY+S V +WLK D E G+ K P WKG+ GLY GF+ GL G S DA
Sbjct: 342 VILATGYRSNVPSWLKEND---LGEIGIEKNPFPKGWKGKAGLYAVGFTGRGLSGASFDA 398
Query: 366 KNIANDI 372
++A+DI
Sbjct: 399 MSVAHDI 405
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LPL3 | YUC11_ARATH | 1, ., 1, 4, ., 1, 3, ., - | 0.5909 | 0.9685 | 0.9437 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| FML9 | flavine-containing monoxygenase (381 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| fgenesh4_pg.C_scaffold_805000001 | hypothetical protein (164 aa) | • | 0.414 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 381 | |||
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 2e-41 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 2e-24 | |
| TIGR04046 | 400 | TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido | 4e-17 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 1e-14 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 7e-11 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 7e-10 | |
| pfam13434 | 335 | pfam13434, K_oxygenase, L-lysine 6-monooxygenase ( | 1e-09 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 2e-08 | |
| COG3486 | 436 | COG3486, IucD, Lysine/ornithine N-monooxygenase [S | 4e-08 | |
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 6e-06 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 2e-04 | |
| PRK08132 | 547 | PRK08132, PRK08132, FAD-dependent oxidoreductase; | 4e-04 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 4e-04 | |
| pfam01494 | 349 | pfam01494, FAD_binding_3, FAD binding domain | 6e-04 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 8e-04 | |
| COG0654 | 387 | COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox | 0.002 | |
| PRK06126 | 545 | PRK06126, PRK06126, hypothetical protein; Provisio | 0.002 | |
| PRK07208 | 479 | PRK07208, PRK07208, hypothetical protein; Provisio | 0.003 | |
| PRK08243 | 392 | PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen | 0.004 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 0.004 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-41
Identities = 101/398 (25%), Positives = 150/398 (37%), Gaps = 60/398 (15%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNI-ILEREDCSASLWKKRAYDRMKLHLAKQFC 59
V I+GAG +GLA + L VP+ I E+ D W+ Y ++L K
Sbjct: 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLL 65
Query: 60 ELPHMPFPSR--TPTFVPRISFIN-YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVA 116
P +PF F +I Y++ Y + I R++ VE A +DE+ K W +
Sbjct: 66 GFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQI--RFNTRVEVADWDEDTKRWTVTT 123
Query: 117 KNTALDAYEEYVARYLVVATG--ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLV 174
+ E A ++VVATG IP+ GL F+G +HS+ + N GK VLV
Sbjct: 124 SD---GGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLV 180
Query: 175 VGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFA--------------------G 214
+G G S ++IA +L+ GA ++ R P H+L + ++ G
Sbjct: 181 IGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRRG 240
Query: 215 MLLLKFLPC-------KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTID 267
+L LP D V L + L R GP Y A D
Sbjct: 241 RVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDY--APGDGRLVPD 298
Query: 268 VGAMDKIRKGEIQVFPSITSINRNEVEFEN-GKIEEFEAIIFATGYKSTV---------- 316
+ G+++V I + G+ EE + II ATG +
Sbjct: 299 GDLFEAGASGDVEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGG 358
Query: 317 RNWLKRADKDFFDEYGMPKRNCPN------HWKGENGL 348
W K A + G+ PN K GL
Sbjct: 359 DPWDKDAPLAY---KGLALSGGPNLFLIGGPTKASGGL 393
|
Length = 443 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 90/339 (26%), Positives = 147/339 (43%), Gaps = 44/339 (12%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK---------KRAYDRMKLHLAK 56
V ++GAG +GL++ C + ER D LW+ Y + + +K
Sbjct: 4 VAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSSK 63
Query: 57 QFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHR------SVESASYDENAK 110
+ PFP P F+ F+ Y+ + + +Y + SV +
Sbjct: 64 EMSCFSDFPFPEDYPNFMHNSKFLEYLRMFAKHFDL-LKYIQFKTTVCSVTKRPDFSTSG 122
Query: 111 AWIIVAKNTALDAYEEY-VARYLVVATGE--NGLIP--EVPGLGSFEGEYMHSSKYENGG 165
W +V T + +E V ++V TG N +P PG+ F+G+Y HS Y++
Sbjct: 123 QWEVV---TEHEGKQESAVFDAVMVCTGHHTNPHLPLESFPGINKFKGQYFHSRDYKHPE 179
Query: 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR--------EIVFA---G 214
F GK VLV+G GNSG +IA +LS A + R VL+R +++
Sbjct: 180 GFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSWVLSRVSDWGYPWDMLLTTRFC 239
Query: 215 MLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKI 274
L LP ++ ++++ +F N YGL PK G + P ++ ++I
Sbjct: 240 SFLRNILPTRISNWLMERQLNKRF-NHENYGLS-PKNG------KLAKEPIVNDELPNRI 291
Query: 275 RKGEIQVFPSITSINRNEVEFENGKIEE-FEAIIFATGY 312
G ++V PS+ FE+G +EE + +IFATGY
Sbjct: 292 LCGAVKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGY 330
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 13/189 (6%)
Query: 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPH 63
PVVI+GAG AGL+ S L + +++LE+ + S W+ +D L C LP
Sbjct: 1 YPVVIIGAGQAGLSVSYYLKQAGIDHVVLEKHTVAHS-WRDERWDSFCLVTPNWQCRLPG 59
Query: 64 MPFPSRTPT-FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALD 122
P+ P F+ + + Y+D Y R V S +
Sbjct: 60 HPYDGTDPDGFMVKDEIVAYLDGYARSFNPPVREGTEVTSLRKHGAGGFRVS-------T 112
Query: 123 AYEEYVARYLVVATGENGLIPEVPGLGSF---EGEYMHSSKYENGGKFIGKNVLVVGCGN 179
+ + A +V+ATG + P +P L + +HSS+Y N + VLVVG G
Sbjct: 113 SAGAFTADQVVIATGGYHV-PVIPPLAERLPADVLQLHSSEYRNPDQLPDGAVLVVGSGQ 171
Query: 180 SGMEIAYDL 188
SG +IA DL
Sbjct: 172 SGCQIAEDL 180
|
Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-14
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 21/208 (10%)
Query: 7 VIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP 65
++VGAG AG+A + L +L P II++R W+K Y ++LH F MP
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHWRK-WYPFVRLHQPSFFYGDFGMP 59
Query: 66 -FPSRTPTFVPRISF----------INYVDNYVSQMGINPRYHRSVESASYDENAKAWII 114
+ + P+ Y+++ + G+ R V + D +++
Sbjct: 60 DLNALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGR--FVV 117
Query: 115 VAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLV 174
+ E A Y+V ATG + P+ PG + E +H GK V V
Sbjct: 118 RLTDG-----ETVRADYVVDATGAFSV-PKPPGFPGADAEGVHLVDVLERIDLKGKTVAV 171
Query: 175 VGCGNSGMEIAYDLSSCGACTSIVVRGP 202
+G G++ ++ A +L G + + R P
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITRRP 199
|
Length = 202 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 7e-11
Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 23/197 (11%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP 65
VVI+G GPAGLA + L L + ++ERE Y+R L
Sbjct: 2 VVIIGGGPAGLAAAIRLARLGLKVALIEREG-------GTCYNRGCLPKKLLLEVAE--- 51
Query: 66 FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE 125
+ + + + G+ E D K ++ T
Sbjct: 52 -------GLELAIGLALPEEVYKEFGV--EVLLGTEVVDIDRGEKTVVLKDVETG----R 98
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
E L++ATG IP +PG+ + S + K V+VVG G G+E+A
Sbjct: 99 EITYDKLIIATGARPRIPGIPGVEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELA 158
Query: 186 YDLSSCGACTSIVVRGP 202
L+ G ++V R
Sbjct: 159 AALAKLGKEVTVVERRD 175
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 48/213 (22%)
Query: 1 MEEVPVVIVGAGPAGLATS--ACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQF 58
M+ V+I+G GPAGL + A L V +ILE +
Sbjct: 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVV-LILEG---------------GEPGG---- 40
Query: 59 CELPHMPFPSRT------PTFVPRISFINYVDNYVSQ---MGINPRYHRSVESASYDENA 109
++T P F I ++ Q G+ E +
Sbjct: 41 -------QLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVE---IVEDEVEKVELEG 90
Query: 110 KAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIG 169
+ + Y A+ +++ATG VPG FEG+ + G F G
Sbjct: 91 GPFKVKTDK------GTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCAT-CDGFFKG 143
Query: 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202
K+V+V+G G+S +E A LS ++V R
Sbjct: 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD 176
|
Length = 305 |
| >gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring) | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 63/281 (22%), Positives = 105/281 (37%), Gaps = 77/281 (27%)
Query: 73 FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132
F R F +Y+ SQ+ N R+ VE D++ + ++T + Y+AR L
Sbjct: 91 FPSRREFNDYLQWAASQLE-NVRFGAEVEEVEPDDSGFLLRVHTRDT--GTEQTYLARNL 147
Query: 133 VVATGENGLIPEVP-GLGSFEGE-YMHSSKY-----ENGGKFIGKNVLVVGCGNSGMEIA 185
V+ TG P +P GE HSS+Y GK + VVG G S EI
Sbjct: 148 VLGTG---TTPYIPECAKPLPGERVFHSSEYLLRKPRLLA---GKRITVVGGGQSAAEIF 201
Query: 186 YDLSSCGACTSI--VVRGPVHV------LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMK 237
DL + V R P T E F P +++
Sbjct: 202 LDLLRRQPGYQLTWVTRRPNFFPLDDSPFTNEY---------FSP----EYV-------- 240
Query: 238 FGNLFKYGLERPKKGPFYFKAITGQTPT----IDVGAMDKIRK--------GE--IQVFP 283
+ F Y L K+ + + Q T ID +++I + G+ +++ P
Sbjct: 241 --DYF-YALPEEKRD----RLLREQKLTNYKGIDPDLIEEIYRRLYQQKVLGDPRVRLLP 293
Query: 284 S--ITSINRN----EVEFENGK-----IEEFEAIIFATGYK 313
+ + + ++ NG+ + +A++ ATGY+
Sbjct: 294 NREVQAAEATGDGYQLTLRNGEQGEEETLDADAVVLATGYR 334
|
This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 27/204 (13%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP 65
V+I+GAGP GLA + + +I+E+ + S+++ M + E+ +P
Sbjct: 2 VIIIGAGPCGLACAIEAQKAGLSYLIIEKGNLVNSIYRYPTN--MTFFSTSERLEIGGIP 59
Query: 66 FPS--RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDA 123
F S PT R + Y + +N R + V + + + +
Sbjct: 60 FISENPKPT---RNEALEYYRRVAERFKLNIRLYEEVLKV--KKTDGGFEVTTEKG---- 110
Query: 124 YEEYVARYLVVATGENGLIP---EVPGLGSFEGEYMH--SSKYENGGKFIGKNVLVVGCG 178
Y A+ ++VATG IP VP GE + S Y+ + G+ V+VVG
Sbjct: 111 --TYQAKNVIVATGYYD-IPNLLNVP------GEDLPKVSHYYKEAHPYFGQKVVVVGGS 161
Query: 179 NSGMEIAYDLSSCGACTSIVVRGP 202
NS ++ A +L GA ++V RG
Sbjct: 162 NSAVDAALELYRKGAEVTMVHRGD 185
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|226017 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 72/340 (21%), Positives = 115/340 (33%), Gaps = 91/340 (26%)
Query: 73 FVPRISFINYVDNYVSQMGINPRYHRSVE---SASYDENAKAWIIVAKNTALDAYEEYVA 129
+PR + +Y SQ+ + R+ V S D + +++ A T Y A
Sbjct: 94 HIPRREYNDYCQWAASQLP-SLRFGEEVTDISSLDGDAVVRLFVVTANGT------VYRA 146
Query: 130 RYLVVATGENGLIPEVPGLGSFEGEY-MHSSKY-ENGGKFIGKN-VLVVGCGNSGMEIAY 186
R LV+ G IP S GE HSS+Y E + + K V V+G G S EI
Sbjct: 147 RNLVLGVGTQPYIPPC--FRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFL 204
Query: 187 DL--SSCGACTSI--VVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242
DL S + + R + F L F P D+
Sbjct: 205 DLLNSQPPQDYQLNWITRSSGFLPMDYSKFG---LEYFSPE-YTDYF------------- 247
Query: 243 KYGLERPKK-------GPFYFKAITGQT-----------------------PTIDVGAMD 272
YGL + Y K I+ T +V +++
Sbjct: 248 -YGLPPEARDELLRKQRLLY-KGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVE 305
Query: 273 KIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLKR-ADKDFFDE- 330
G ++ ++ E+E E +A+I ATGY+ V ++L+ AD+ +D+
Sbjct: 306 PAGDGRYRL--TLRHHETGELE-----TVETDAVILATGYRRAVPSFLEGLADRLQWDDD 358
Query: 331 --------YGMPKRNCPNHWKGENGLYCAGFSRTGLHGIS 362
Y + G+ ++ HGI
Sbjct: 359 GRLVIGRDYRVLWDG-----PGKGRIFVQNAE-LHTHGIG 392
|
Length = 436 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 38/232 (16%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW--------------------KKR 45
V ++GAG AGL + L ++ ERE LW
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSS 72
Query: 46 AYDRMKLHLAKQ---FCELPHMPFP---SRTPTFVPR-ISFINYVDNYVSQMGINPRYHR 98
Y+ ++ +L ++ + + P +P SR P + Y+ ++ + I
Sbjct: 73 VYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRF 132
Query: 99 SVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE--NGLIPEVPGLGSFEGEYM 156
E + W + +KN+ + +E + +VV G + +PG+ S+ G+ +
Sbjct: 133 ETEVVRVEPVDGKWRVQSKNSGGFSKDE-IFDAVVVCNGHYTEPNVAHIPGIKSWPGKQI 191
Query: 157 HSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR 208
HS Y F + V+V+G SG +I+ D++ V VH+ +R
Sbjct: 192 HSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK--------VAKEVHIASR 235
|
Length = 461 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 46/201 (22%), Positives = 70/201 (34%), Gaps = 36/201 (17%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPN--IILEREDCSASLWKKRAYDRMKLHLAKQFCELP- 62
+VIVG G AGL+ + L L + ++ RE K +Y R C L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGRE-------PKYSYYR---------CPLSL 44
Query: 63 HMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALD 122
++ + + Y + GI+ R V S I L
Sbjct: 45 YVGGGIASL------EDLRYPPRFNRATGIDVRTGTEVTS----------IDPENKVVLL 88
Query: 123 AYEEYVARYLVVATGENGLIPEVPGL-GSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSG 181
E YLV+ATG P + G ++ GG K+V+VVG G G
Sbjct: 89 DDGEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIG 148
Query: 182 MEIAYDLSSCGACTSIVVRGP 202
+E A + G +++
Sbjct: 149 LEAAEAAAKRGKKVTLIEAAD 169
|
Length = 415 |
| >gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED--CSAS---LWKKRA---YDR 49
PVV+VGAGP GLA + L VP ++L+ +D + S + KR+ +DR
Sbjct: 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDR 77
|
Length = 547 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 49/187 (26%)
Query: 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHM 64
V ++GAGPAGLA + L P + ERE+ A +K ++ QF
Sbjct: 541 KVAVIGAGPAGLAAAYFLARAGHPVTVFEREE--------NAGGVVK-NIIPQF------ 585
Query: 65 PFPSRTPTFVPRIS--FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALD 122
RI I + +V G+ + S + ++
Sbjct: 586 -----------RIPAELIQHDIEFVKAHGVKFEFGCSP-----------------DLTVE 617
Query: 123 AYEEYVARYLVVATG---ENGLIPEVPGLGSFEG-EYMHSSKYENGGKFIGKNVLVVGCG 178
+ Y+VVA G GL E + ++ K + +GK+V+VVG G
Sbjct: 618 QLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGG 677
Query: 179 NSGMEIA 185
N+ M+ A
Sbjct: 678 NTAMDAA 684
|
Length = 1019 |
| >gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILER 34
E V+IVG GPAGL + L V +++ER
Sbjct: 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVER 32
|
This domain is involved in FAD binding in a number of enzymes. Length = 349 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 8e-04
Identities = 55/238 (23%), Positives = 88/238 (36%), Gaps = 59/238 (24%)
Query: 1 MEEVPVVIVGAGPAGL--ATSACLNNLSVPNIILERED---------C--SASLWKKRAY 47
ME+ V+++GAGPAG A A V ++E+ C S +L A
Sbjct: 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKV--ALIEKGPLGGTCLNVGCIPSKALIA--AA 56
Query: 48 DRMKLHLAKQFCELPHMPFPSRTPTF-----VPRISF---INYVDN----YVSQMGINPR 95
+ H AK F P+I F + V +V +
Sbjct: 57 EAF--HEAK------------HAEEFGIHADGPKIDFKKVMARVRRERDRFVGGV----- 97
Query: 96 YHRSVESAS----YDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSF 151
+E A+ V NT E A+ +V+ATG +P +PG+
Sbjct: 98 -VEGLEKKPKIDKIKGTAR---FVDPNTVEVNGERIEAKNIVIATG--SRVPPIPGVWLI 151
Query: 152 EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE 209
G+ + +S + K++ V+G G G+E+ LS G ++ RG +L E
Sbjct: 152 LGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLE 208
|
Length = 460 |
| >gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 4 VPVVIVGAGPAGLATSACLNNLSVPNIILER 34
+ V IVGAGPAGLA + L + +LER
Sbjct: 3 LDVAIVGAGPAGLALALALARAGLDVTLLER 33
|
Length = 387 |
| >gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36
E PV+IVG GP GLA + L V +I++ER+D
Sbjct: 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40
|
Length = 545 |
| >gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36
+ VVI+GAGPAGL + L P +LE +
Sbjct: 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37
|
Length = 479 |
| >gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.004
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILER 34
V I+GAGPAGL L+ + +++LER
Sbjct: 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33
|
Length = 392 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 86 YVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145
++ Q I+ ++ + ++ L++ E A+ ++VATG V
Sbjct: 276 HIKQYPIDLMENQRAKKIETEDGLIV-------VTLESGEVLKAKSVIVATGARWRKLGV 328
Query: 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVV 199
PG + G+ + + +G F GK+V V+G GNSG+E A DL+ G + V
Sbjct: 329 PGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLA--GIVRHVTV 380
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 381 | |||
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.98 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 99.97 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.97 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.97 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.97 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.97 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.97 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.97 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.97 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.97 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 99.96 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.96 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.96 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.95 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.95 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.95 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.95 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.95 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.95 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.95 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.94 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.93 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.93 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.92 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.9 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.85 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.85 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.84 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.82 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.82 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.8 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.8 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.73 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.69 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.69 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.68 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.67 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.6 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.6 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.5 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.44 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 99.38 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.36 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 99.35 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 99.34 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 99.34 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 99.33 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 99.33 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 99.33 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 99.32 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 99.31 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 99.3 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 99.29 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 99.29 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 99.27 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 99.26 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.24 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 99.23 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 99.23 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.23 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 99.23 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 99.22 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 99.22 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 99.22 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.2 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 99.18 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.17 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 99.17 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 99.16 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 99.16 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 99.16 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 99.15 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.15 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 99.15 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 99.15 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 99.15 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 99.13 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 99.12 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.11 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 99.11 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 99.11 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 99.1 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 99.1 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 99.09 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 99.09 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 99.09 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.09 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 99.08 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 99.07 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 99.07 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 99.07 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 99.07 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 99.06 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 99.04 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 99.04 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 99.04 | |
| PLN02661 | 357 | Putative thiazole synthesis | 99.03 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 99.03 | |
| PRK05868 | 372 | hypothetical protein; Validated | 99.02 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.02 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.01 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 99.01 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 99.01 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 99.0 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.98 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.97 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.97 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.96 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.96 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.95 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.94 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.93 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.93 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.92 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.92 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.91 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.9 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.9 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.89 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.89 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.89 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 98.88 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.87 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.86 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.86 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.85 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.84 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.83 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.83 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.81 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.79 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.79 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.78 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.78 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.77 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.77 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.77 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.77 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.76 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.76 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.76 | |
| PLN02985 | 514 | squalene monooxygenase | 98.76 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.76 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.75 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.75 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.75 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.75 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.73 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.73 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.73 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.73 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.73 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.72 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.72 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.72 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.72 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.71 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.71 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.71 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.7 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.7 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.7 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.69 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.69 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.69 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.69 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.68 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.68 | |
| PLN02507 | 499 | glutathione reductase | 98.68 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.68 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.67 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.66 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.66 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.66 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.65 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.65 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.64 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.64 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.64 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.64 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.64 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.63 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.63 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.63 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.63 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 98.63 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.63 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.63 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.62 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.62 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.62 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.61 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.6 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.6 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 98.59 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.59 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.59 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 98.59 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.58 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.57 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.57 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.57 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.56 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.56 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.55 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.54 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.54 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.54 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.54 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.54 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.54 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.53 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.53 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.53 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.52 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.52 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.5 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 98.5 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.44 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.43 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.43 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.43 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.43 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.42 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.42 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.41 | |
| PLN02546 | 558 | glutathione reductase | 98.41 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.41 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.4 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 98.4 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.37 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 98.37 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.37 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 98.37 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.37 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.34 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.34 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.34 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.34 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 98.32 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.32 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 98.32 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.27 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.26 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.25 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.23 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 98.22 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 98.21 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.21 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 98.2 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.2 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.19 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 98.18 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 98.15 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 98.14 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.14 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 98.13 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.13 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 98.13 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.12 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 98.12 | |
| PLN02268 | 435 | probable polyamine oxidase | 98.12 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.1 | |
| PLN02568 | 539 | polyamine oxidase | 98.1 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 98.06 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 98.05 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.04 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.02 | |
| PLN02676 | 487 | polyamine oxidase | 98.02 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 98.0 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.97 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.96 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.96 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 97.96 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.95 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.95 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.93 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.9 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.89 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.89 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.89 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 97.88 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.85 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 97.82 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.82 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.8 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.8 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.79 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 97.78 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.77 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.75 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.75 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 97.72 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 97.7 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.69 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.69 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 97.69 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.68 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 97.67 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.65 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.63 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.61 | |
| PLN02612 | 567 | phytoene desaturase | 97.61 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.6 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 97.59 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.59 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.58 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.56 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.56 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.54 | |
| PLN03000 | 881 | amine oxidase | 97.5 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.49 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.48 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.48 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.48 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.46 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 97.46 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.44 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.42 | |
| PLN02976 | 1713 | amine oxidase | 97.41 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.29 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.28 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.27 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.26 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.25 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.25 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.25 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.24 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.23 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.22 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.21 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.2 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.2 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.15 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.15 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.15 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.13 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.12 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 97.12 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.11 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.08 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 97.08 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.07 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.06 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.06 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.05 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.04 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.03 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.01 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.0 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 96.99 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 96.99 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 96.96 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.96 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 96.95 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.94 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 96.93 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 96.92 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 96.91 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 96.91 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 96.88 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 96.87 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 96.86 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 96.86 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 96.82 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.81 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.79 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 96.78 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 96.76 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 96.73 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.73 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.72 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.72 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 96.71 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 96.7 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 96.69 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.64 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 96.64 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 96.62 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 96.61 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 96.59 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 96.58 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 96.56 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 96.56 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 96.54 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 96.51 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.49 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 96.47 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 96.45 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 96.44 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 96.42 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.41 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 96.41 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 96.33 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 96.31 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 96.29 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 96.27 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 96.26 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 96.24 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 96.21 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.12 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.11 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 96.07 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 96.03 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.0 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 96.0 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.98 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.97 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 95.95 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 95.95 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 95.92 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 95.92 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 95.9 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.89 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 95.89 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 95.88 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.86 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 95.85 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 95.79 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 95.76 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 95.74 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.74 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 95.73 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 95.72 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.63 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 95.55 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.51 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 95.48 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 95.45 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 95.42 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.33 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.26 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 95.22 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.22 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 95.17 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.17 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.12 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.12 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 95.08 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.05 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.01 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 95.01 | |
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 95.0 |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=337.28 Aligned_cols=359 Identities=30% Similarity=0.475 Sum_probs=217.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC---------CCCCCeeeecCCcccccCCCCCCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK---------RAYDRMKLHLAKQFCELPHMPFPSRTPTFV 74 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (381)
++|+|||||++|+++|..|.+.|++++++|+++.+||.|+. ..|+.+..+.+..++.++++|+|.+++.++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999999999974 358889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCc--cccccEEEEEEEeCC---CCeEEEEEeecCCCceEEEEeCEEEEccCCC--CCCCC--C
Q 035902 75 PRISFINYVDNYVSQMGIN--PRYHRSVESASYDEN---AKAWIIVAKNTALDAYEEYVARYLVVATGEN--GLIPE--V 145 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--~~~~~--~ 145 (381)
+..++.+|++.+++++++. ++++++|.++++..+ .+.|.|++.++ +..++-.+|+||+|||.. |..|. +
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~--g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND--GKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT--TEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC--CeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 9999999999999999874 689999999988653 25799987542 234556799999999987 88885 8
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH---HHHHH------
Q 035902 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV---FAGML------ 216 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~---~~~~~------ 216 (381)
||++.|+|.++|+.+|.+...+.+|+|+|||+|.||+|+|..++..+++|++..|++.|++|+... .....
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~ 239 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFS 239 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------------------------
T ss_pred hhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998653 11111
Q ss_pred --HHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEE
Q 035902 217 --LLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVE 294 (381)
Q Consensus 217 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~ 294 (381)
+.+.++..+..++........+ +....++. |. .......|.+++++.+.+..++|++..+|.+++++++.
T Consensus 240 ~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p~------~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~ 311 (531)
T PF00743_consen 240 SFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-PK------HRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVI 311 (531)
T ss_dssp -------------------------------------------------------------------EE-EEEE-SSEEE
T ss_pred cccccccccccccccccccccccc-cccccccc-cc------cccccccccccccccccccccccccccccccccccccc
Confidence 1111221111111110000000 11222221 11 12234567889999999999999988779999999999
Q ss_pred EcCCcEe-eccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCC-C--CCCcEEEEeccccc--c-cCccHHHHH
Q 035902 295 FENGKIE-EFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHW-K--GENGLYCAGFSRTG--L-HGISIDAKN 367 (381)
Q Consensus 295 ~~~g~~~-~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~ifa~Gd~~~~--~-~~a~~~a~~ 367 (381)
++||+++ ++|.||+|||++.++++ +. + ..+-..++.+... .... . ..|++.++|-+... . ..+..||+.
T Consensus 312 F~DGs~~e~vD~II~~TGY~~~fpF-L~-~-~~~~~~~~~~~LY-k~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw 387 (531)
T PF00743_consen 312 FEDGSTEEDVDVIIFCTGYKFSFPF-LD-E-SLIKVDDNRVRLY-KHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARW 387 (531)
T ss_dssp ETTSEEEEE-SEEEE---EE---TT-B--T-TTT-S-SSSSSEE-TTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc-cc-c-ccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 9999875 69999999999999864 44 3 2121122222211 1111 1 34899999987532 2 278899999
Q ss_pred HHHHhhhcc
Q 035902 368 IANDINLAL 376 (381)
Q Consensus 368 ~a~~i~~~l 376 (381)
+|+-+.+.+
T Consensus 388 ~a~v~sG~~ 396 (531)
T PF00743_consen 388 AARVFSGRV 396 (531)
T ss_dssp HHHHHTTSS
T ss_pred ccccccccc
Confidence 998887754
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=296.43 Aligned_cols=305 Identities=22% Similarity=0.300 Sum_probs=222.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCCe-eeecCCcccccCCCC--C-------CCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYDRM-KLHLAKQFCELPHMP--F-------PSR 69 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~-~~~~~~~~~~~~~~~--~-------~~~ 69 (381)
|.+||++|||+||+|..+|..+++.|.++.++|+...+|| +.+..+.+.- .+.....+..+.... + ..+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 3469999999999999999999999999999999976777 4555554432 222111111111110 0 111
Q ss_pred CCCCCC-HHH----HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 70 TPTFVP-RIS----FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 70 ~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.... .+. +....+.++++.+++++.+. . .+.+ .+. |..... +.+.++++++|||||++|..|+
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a---~f~~-~~~--v~V~~~---~~~~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-A---RFVD-PHT--VEVTGE---DKETITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-E---EECC-CCE--EEEcCC---CceEEEeCEEEEcCCCCCcCCC
Confidence 111111 111 22233445555566654432 1 1221 133 444432 2378999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+++++.. .++.+.+..... ..|++++|||||.+|+|+|..++++|.+||++.|.+ .++|.++.+++..+.+.|
T Consensus 152 ~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~ei~~~~~~~l--- 224 (454)
T COG1249 152 GPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPEISKELTKQL--- 224 (454)
T ss_pred CCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHHHHHHHHHHH---
Confidence 8888753 255565655555 479999999999999999999999999999999999 999999998888877665
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENG 298 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g 298 (381)
++++++++.+ ++.++.+ .+.+++|
T Consensus 225 --------------------------------------------------~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g 254 (454)
T COG1249 225 --------------------------------------------------EKGGVKILLNTKVTAVEKKDDGVLVTLEDG 254 (454)
T ss_pred --------------------------------------------------HhCCeEEEccceEEEEEecCCeEEEEEecC
Confidence 4466777777 6666543 3666777
Q ss_pred c--EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 299 K--IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 299 ~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+ ++++|.+++|+|++||++.+.. ++.|+ ++++|++.+| ..+.|+.|||||+||++++++ .|.+||+.++++|
T Consensus 255 ~~~~~~ad~vLvAiGR~Pn~~~LgL-e~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i 332 (454)
T COG1249 255 EGGTIEADAVLVAIGRKPNTDGLGL-ENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENI 332 (454)
T ss_pred CCCEEEeeEEEEccCCccCCCCCCh-hhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHH
Confidence 6 7899999999999999987765 66888 8888999999 566677899999999988876 9999999999999
Q ss_pred hh
Q 035902 373 NL 374 (381)
Q Consensus 373 ~~ 374 (381)
.+
T Consensus 333 ~g 334 (454)
T COG1249 333 AG 334 (454)
T ss_pred hC
Confidence 97
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=293.09 Aligned_cols=306 Identities=22% Similarity=0.378 Sum_probs=232.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------------------CCCCeeeecCCcccccC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR--------------------AYDRMKLHLAKQFCELP 62 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~ 62 (381)
.++|+|||||++|++||.+|++.|.+++|+|+++.+||.|... .|..+..+.+...+.++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 4899999999999999999999999999999999999999642 35566677777777888
Q ss_pred CCCCCCC-------CCCCCCHHHHHHHHHHHHHHhCCc--cccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 63 HMPFPSR-------TPTFVPRISFINYVDNYVSQMGIN--PRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 63 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
.+|++.. .+.+++..++.+|++.+++++++. ++++++|++++..+ +.|.|++.++. +...+..||+||
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~-~~~~~~~~d~VI 166 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSG-GFSKDEIFDAVV 166 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCC-CceEEEEcCEEE
Confidence 8776542 245888999999999999999987 78999999998865 78999887542 122357899999
Q ss_pred EccCC--CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH
Q 035902 134 VATGE--NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV 211 (381)
Q Consensus 134 lAtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~ 211 (381)
+|||. .|+.|.+||++.++|..+|+..+.....+.+|+|+|||+|.+|+|+|..|+..+++|++++|++. +...
T Consensus 167 vAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~-~~~~--- 242 (461)
T PLN02172 167 VCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE-SDTY--- 242 (461)
T ss_pred EeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc-cccc---
Confidence 99994 59999999999999999999999988888999999999999999999999999999999999762 1000
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeC-
Q 035902 212 FAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINR- 290 (381)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~- 290 (381)
. + +. ....++.+...|..+.+
T Consensus 243 -------~-----------------------~--~~--------------------------~~~~~v~~~~~I~~~~~~ 264 (461)
T PLN02172 243 -------E-----------------------K--LP--------------------------VPQNNLWMHSEIDTAHED 264 (461)
T ss_pred -------c-----------------------c--Cc--------------------------CCCCceEECCcccceecC
Confidence 0 0 00 01122222222444433
Q ss_pred CeEEEcCCcEeeccEEEEecCCCCCcchhccccCCccc-ccCCCCC-CCCCCCCCC-CCcEEEEecccccc--cCccHHH
Q 035902 291 NEVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDFF-DEYGMPK-RNCPNHWKG-ENGLYCAGFSRTGL--HGISIDA 365 (381)
Q Consensus 291 ~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~-~~~ifa~Gd~~~~~--~~a~~~a 365 (381)
+.|.+.||+++++|.||+|||+++++++ +. . .+.+ ..++.+. .-..-.... .|+++++|-..... ..+..||
T Consensus 265 g~V~f~DG~~~~~D~Ii~~TGy~~~~pf-L~-~-~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa 341 (461)
T PLN02172 265 GSIVFKNGKVVYADTIVHCTGYKYHFPF-LE-T-NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQS 341 (461)
T ss_pred CeEEECCCCCccCCEEEECCcCCccccc-cC-c-ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHH
Confidence 4689999999999999999999999964 43 3 3322 1122221 110011123 38999999764332 2788899
Q ss_pred HHHHHHhhhcc
Q 035902 366 KNIANDINLAL 376 (381)
Q Consensus 366 ~~~a~~i~~~l 376 (381)
+.+|+-+.+.+
T Consensus 342 ~~~a~v~sG~~ 352 (461)
T PLN02172 342 KWVAAVLSGRV 352 (461)
T ss_pred HHHHHHHcCCC
Confidence 99998887654
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=270.71 Aligned_cols=289 Identities=21% Similarity=0.274 Sum_probs=226.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISF 79 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (381)
|+.+||+||||||||++||.++.+.+++ ++|+|+ ...|+..... ....+++. ++.-.+..++
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~----------~~venypg------~~~~~~g~~L 63 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKT----------TDVENYPG------FPGGILGPEL 63 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccc----------eeecCCCC------CccCCchHHH
Confidence 6779999999999999999999999999 555554 4444322111 01112222 2334567788
Q ss_pred HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecC
Q 035902 80 INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~ 159 (381)
.+.+++.+..+++++.. ..|.+++... ..|.|.+.++ . +++++||+|||..++.|.+||..++.++-+++|
T Consensus 64 ~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~~-----~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc 134 (305)
T COG0492 64 MEQMKEQAEKFGVEIVE-DEVEKVELEG--GPFKVKTDKG-----T-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYC 134 (305)
T ss_pred HHHHHHHHhhcCeEEEE-EEEEEEeecC--ceEEEEECCC-----e-EEEeEEEECcCCcccCCCCCcchhhcCCceEEe
Confidence 99899999988888665 6677776654 2788998886 4 999999999999999999888778889999999
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 160 KYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 160 ~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
..++. .+.+++++|||||.+|+|.|..|++.+++|++++|++ .+-+.
T Consensus 135 ~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~-~~ra~------------------------------- 181 (305)
T COG0492 135 ATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD-EFRAE------------------------------- 181 (305)
T ss_pred eecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc-ccCcC-------------------------------
Confidence 99998 7889999999999999999999999999999999999 33221
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCC-CeEEccC--cceEeCC---eEEEcCC----cEeeccEEEEe
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKG-EIQVFPS--ITSINRN---EVEFENG----KIEEFEAIIFA 309 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~v~~~---~v~~~~g----~~~~~D~vi~a 309 (381)
+...+.+++. ++.++.+ +.++.++ ++.+.+. +.+++|-++.+
T Consensus 182 ----------------------------~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~ 233 (305)
T COG0492 182 ----------------------------EILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIA 233 (305)
T ss_pred ----------------------------HHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEe
Confidence 1113334433 7888777 8888874 6777663 27899999999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccccCC
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~~~ 380 (381)
+|..|+..++.. .+.++++|++.++ +.+.|+.|+|||+||+..... .|..+|..+|.++.++|...+
T Consensus 234 iG~~p~~~~~~~---~~~~~~~g~I~v~-~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~~ 304 (305)
T COG0492 234 IGHLPNTELLKG---LGVLDENGYIVVD-EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESLA 304 (305)
T ss_pred cCCCCchHHHhh---ccccCCCCcEEcC-CCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhcc
Confidence 999999954433 5558999999999 458899999999999987653 899999999999999887653
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=273.30 Aligned_cols=284 Identities=21% Similarity=0.307 Sum_probs=211.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
|||+|||||++|+++|..|++.|.+|+|||+++ .||.|.... .+..++.+ +......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 689999999999999999999999999999886 555433210 01111111 1223456888999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYEN 163 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (381)
++.++++++++++ ++|.+++..+ +.|.+.+.++ ..+.||+||+|||+.|..|.+||.+.+.+...+.+....
T Consensus 64 ~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~~-----~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~ 135 (300)
T TIGR01292 64 KEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGDG-----KEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD 135 (300)
T ss_pred HHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCCC-----CEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC
Confidence 9999999999888 8899988765 5677877654 579999999999999998889987665444454444444
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccc
Q 035902 164 GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFK 243 (381)
Q Consensus 164 ~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.....+++++|||+|.+|+|+|..+++.+.+|+++.|.+. +...
T Consensus 136 ~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~-~~~~----------------------------------- 179 (300)
T TIGR01292 136 GPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK-FRAE----------------------------------- 179 (300)
T ss_pred hhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc-cCcC-----------------------------------
Confidence 3445689999999999999999999999999999999872 2110
Q ss_pred cCCCCCCCCCcccccccCCCccccchhhhhhcCC-CeEEccC--cceEeCC----eEEEc---C--CcEeeccEEEEecC
Q 035902 244 YGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKG-EIQVFPS--ITSINRN----EVEFE---N--GKIEEFEAIIFATG 311 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~v~~~----~v~~~---~--g~~~~~D~vi~a~G 311 (381)
....+.+++. +++++.+ +.+++++ .+.+. + ++++++|.+++|+|
T Consensus 180 ------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 180 ------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred ------------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence 0013334444 7888766 7777654 24442 2 35799999999999
Q ss_pred CCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccc-cc---cCccHHHHHHHHHhhhcc
Q 035902 312 YKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRT-GL---HGISIDAKNIANDINLAL 376 (381)
Q Consensus 312 ~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-~~---~~a~~~a~~~a~~i~~~l 376 (381)
++|+.+ ++. . ..-++++|++.++ +.+.++.||||++|||.+ .+ ..|+.||+.+|.+|...|
T Consensus 236 ~~~~~~-~l~-~-~~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 236 HEPNTE-LLK-G-LLELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCChH-HHH-H-hheecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 999985 444 3 2225778999998 457789999999999987 22 289999999999998764
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=270.03 Aligned_cols=290 Identities=16% Similarity=0.227 Sum_probs=214.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+||||||||++||..|+++|.++++||.. ..||.+... ...+.++.. +...+..++.++
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~----------~~~~~~~~~------~~~~~~~~~~~~ 68 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT----------TEVENWPGD------PNDLTGPLLMER 68 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC----------ceECCCCCC------CCCCCHHHHHHH
Confidence 589999999999999999999999999999965 456543221 011111111 223456678888
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+....++.+++.+ ++..++..+ +.|.+.... ..+.||+||+|||+.|+.|++||.+.+.+..++.+...
T Consensus 69 ~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~------~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~ 139 (321)
T PRK10262 69 MHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDS------GEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATC 139 (321)
T ss_pred HHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecC------CEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecC
Confidence 888888887766554 566777654 667665432 35899999999999999999999776666667777666
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|||+|.+|+|+|..|++.+++|++++|++ .+ +. ...+.
T Consensus 140 ~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~-~~-~~-~~~~~---------------------------- 188 (321)
T PRK10262 140 DGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD-GF-RA-EKILI---------------------------- 188 (321)
T ss_pred CHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC-cc-CC-CHHHH----------------------------
Confidence 6656679999999999999999999999999999999987 22 11 11111
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcCC------cEeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFENG------KIEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~g------~~~~~D~vi~a 309 (381)
....+.+++.+|+++.+ ++++.++ .+.+.++ +++++|.|+++
T Consensus 189 -------------------------~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a 243 (321)
T PRK10262 189 -------------------------KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVA 243 (321)
T ss_pred -------------------------HHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEE
Confidence 11244567788998887 8888765 3555432 47999999999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCC----CCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNC----PNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+|++|+... +. . ++-.++|++.++. +.+.|+.|||||+|||++... .|+.+|..+|..|+++|+.
T Consensus 244 ~G~~p~~~l-~~-~--~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 244 IGHSPNTAI-FE-G--QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred eCCccChhH-hh-c--cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHh
Confidence 999999863 33 2 2322457787772 145689999999999986432 8999999999999998854
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=282.76 Aligned_cols=298 Identities=15% Similarity=0.225 Sum_probs=204.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCe-eeecCC------c--ccccCCC-CCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRM-KLHLAK------Q--FCELPHM-PFPSRT 70 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~-~~~~~~------~--~~~~~~~-~~~~~~ 70 (381)
++|||+||||||+|++||..+++.|.+|+|||+. .+||.+ +..+.+.- ...... . .+++... ....++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 4699999999999999999999999999999996 477743 33333321 111000 0 0011100 000111
Q ss_pred CCCCC-HHHHH----HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC-C
Q 035902 71 PTFVP-RISFI----NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP-E 144 (381)
Q Consensus 71 ~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~-~ 144 (381)
+.... ++++. +.+...+++.+++++.++.+. .+ .+. |..+ + ..+.||+||+|||+.|..| .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~--~~~--v~v~-~-----~~~~~d~vIiAtGs~p~~p~~ 146 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TK--DGT--VEVN-G-----RDYTAPHILIATGGKPSFPEN 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---cc--CCE--EEEC-C-----EEEEeCEEEEecCCCCCCCCC
Confidence 11111 11222 234444555677777665431 11 233 4442 2 5699999999999999988 7
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||.+. ..++..+.... ..+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .+++..+.++...+
T Consensus 147 i~g~~~----~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~~~~~~------- 213 (450)
T TIGR01421 147 IPGAEL----GTDSDGFFALE-ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSMISETI------- 213 (450)
T ss_pred CCCCce----eEcHHHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHHHHHHH-------
Confidence 888652 12223332222 247999999999999999999999999999999998 66676655544443
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFEN 297 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~ 297 (381)
.+.+++.+|+++.+ ++++..+ .+.+++
T Consensus 214 ----------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~ 247 (450)
T TIGR01421 214 ----------------------------------------------TEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFED 247 (450)
T ss_pred ----------------------------------------------HHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECC
Confidence 33346678888887 7777542 355667
Q ss_pred C-cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 298 G-KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 298 g-~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+ +.+++|.|++++|++||++.+.. +..++ ++++|++.+| +.++|+.|||||+|||.+.+. .|..||+.+|++|
T Consensus 248 g~~~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i 325 (450)
T TIGR01421 248 GKSIDDVDELIWAIGRKPNTKGLGL-ENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERL 325 (450)
T ss_pred CcEEEEcCEEEEeeCCCcCcccCCc-cccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHH
Confidence 7 57999999999999999975433 43666 7888999999 567789999999999987655 8899999999999
Q ss_pred hh
Q 035902 373 NL 374 (381)
Q Consensus 373 ~~ 374 (381)
.+
T Consensus 326 ~~ 327 (450)
T TIGR01421 326 FN 327 (450)
T ss_pred hc
Confidence 85
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=271.96 Aligned_cols=350 Identities=26% Similarity=0.418 Sum_probs=251.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
+++||+|||||++|+++|++|.+.|.. ++|+|+++.+||.|+..+|+.+.++.+...+.++.++++ +...++...++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~~ 85 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEIK 85 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccHH
Confidence 468999999999999999999999998 999999999999999999999999999999999999986 334455666677
Q ss_pred HHHHHHHHHhCCc--cccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC--CCCCCCCCCCCCCccee
Q 035902 81 NYVDNYVSQMGIN--PRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN--GLIPEVPGLGSFEGEYM 156 (381)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--~~~~~~~g~~~~~~~~~ 156 (381)
+|+..++++|++. +.+++.|..++.+++.+.|+|+++++... ++.+|+||+|||.. |.+|.++|.+.|.|.++
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~---~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~ 162 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTG---ELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL 162 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCee---eEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence 8888888888765 56777888888887778999999987322 27899999999988 99999999999999999
Q ss_pred ecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH----HHHHHHHhhCcHHHHHHHHHH
Q 035902 157 HSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV----FAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 157 ~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~ 232 (381)
|+.++.+..++.+|+|+|||+|.||++++..|++.|++|++++|++.+.+|.... .....+...++..+.......
T Consensus 163 HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
T COG2072 163 HSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRRGRV 242 (443)
T ss_pred chhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCccceehhhhhh
Confidence 9999999999999999999999999999999999999999999999888886652 333333333333222111100
Q ss_pred Hhh---hhh------------cCccccCCCCCCCCCcccc------cccCCCccccchhhhhhcCCCeEEccC-cceEeC
Q 035902 233 LSK---MKF------------GNLFKYGLERPKKGPFYFK------AITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINR 290 (381)
Q Consensus 233 ~~~---~~~------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~ 290 (381)
... .+. ....+..+.+....+.... ....++...+..++......++.+++. ++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (443)
T COG2072 243 LDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEVVTEIIDRFTE 322 (443)
T ss_pred hhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcccceeeccccccCC
Confidence 000 000 0000111111001111110 011122344556677778888888888 776666
Q ss_pred CeEEEcCCcEeeccEEEEecCCCCCcchhccccCCccc-cc-C-CCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 291 NEVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDFF-DE-Y-GMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 291 ~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~-~~-~-g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
..+...+++.++.|.++.+||+..+.-.... .+.. ++ + .....+......+.||+|.++.-....
T Consensus 323 ~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~ 390 (443)
T COG2072 323 GGILLDSGREEEADVIITATGLDANDLSGAA---GGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKAS 390 (443)
T ss_pred cceecCCCccccceEEEecCCCchhheeeec---cccccccccccccceeccccccCCCceEEecCccCCc
Confidence 7777777777999999999999985211121 2221 11 1 112222234456789999999776553
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=279.32 Aligned_cols=300 Identities=15% Similarity=0.189 Sum_probs=206.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcC-CCCCCCeeeecCCcccccCCCCCCCCCCC-CCCHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWK-KRAYDRMKLHLAKQFCELPHMPFPSRTPT-FVPRI 77 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 77 (381)
|++|||+||||||+|++||..|+++|.+|+|||+.+ .+||.+. ..+.+...+-... . ...++.. ....+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~-------~-~~~~~~~~~~~~~ 72 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA-------Q-QHTDFVRAIQRKN 72 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh-------c-cCCCHHHHHHHHH
Confidence 888999999999999999999999999999999976 4677653 2222211100000 0 0001111 11112
Q ss_pred HHHHHHH-----HHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCC
Q 035902 78 SFINYVD-----NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFE 152 (381)
Q Consensus 78 ~~~~~~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~ 152 (381)
++.++++ +..+..+++++.+ ++..++ .+.+.|...++ ...+.||+||+|||+.|..|++||++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~----~~~~~v~~~~g----~~~~~~d~lviATGs~p~~p~i~G~~~~~ 143 (441)
T PRK08010 73 EVVNFLRNKNFHNLADMPNIDVIDG-QAEFIN----NHSLRVHRPEG----NLEIHGEKIFINTGAQTVVPPIPGITTTP 143 (441)
T ss_pred HHHHHHHHhHHHHHhhcCCcEEEEE-EEEEec----CCEEEEEeCCC----eEEEEeCEEEEcCCCcCCCCCCCCccCCC
Confidence 2333332 1222235555433 343332 24555655443 13699999999999999999999986544
Q ss_pred cceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 153 GEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
+ +++....... ...+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 144 ~-v~~~~~~~~~-~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l--------------- 205 (441)
T PRK08010 144 G-VYDSTGLLNL-KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIADNI--------------- 205 (441)
T ss_pred C-EEChhHhhcc-cccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHHHH---------------
Confidence 3 4444333332 3357899999999999999999999999999999988 67776655444333
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEc-CCcEeeccEEE
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFE-NGKIEEFEAII 307 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~-~g~~~~~D~vi 307 (381)
.+.+++.+++++.+ +++++.+ .+.+. ++.++++|.++
T Consensus 206 --------------------------------------~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl 247 (441)
T PRK08010 206 --------------------------------------ATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALL 247 (441)
T ss_pred --------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEE
Confidence 33456678888876 7777643 34332 23368999999
Q ss_pred EecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 308 FATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
+|+|.+||+..+.. ...++ ++++|++.+| +.++++.|||||+|||++.+. .|..+|+.++++|.+.
T Consensus 248 ~a~G~~pn~~~l~~-~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 248 IASGRQPATASLHP-ENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred EeecCCcCCCCcCc-hhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 99999999865433 33666 6788999999 567889999999999998755 8889999999999863
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=282.41 Aligned_cols=308 Identities=14% Similarity=0.150 Sum_probs=210.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCCeeeec-CCcccccCCCC-C-CCCCCCCCCH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK-KRAYDRMKLHL-AKQFCELPHMP-F-PSRTPTFVPR 76 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 76 (381)
|.+|||+||||||+|+.+|..|++.|.+|+|||+...+||.|. ..+.+...+.. ...+..+...+ + ....+...+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 3469999999999999999999999999999999888888654 33333211100 00000000000 0 0000111222
Q ss_pred HHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 77 ISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 77 ~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
.++. +.+++.+++.+++++.+. +..++ .+.+.+...++ +...++||+||+|||+.|..|++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~----~~~~~v~~~~g---~~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD----PHTVEVECPDG---EVETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec----CCEEEEEeCCC---ceEEEEcCEEEEcCCCCCCCCCC
Confidence 3332 234445556677766543 32222 24555655443 22479999999999999988877
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
++... ..++++.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.|++ .++|..+.++...+
T Consensus 155 ~~~~~--~~v~~~~~~~~~-~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~l-------- 222 (461)
T PRK05249 155 VDFDH--PRIYDSDSILSL-DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEISDAL-------- 222 (461)
T ss_pred CCCCC--CeEEcHHHhhch-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHHHHHH--------
Confidence 66543 123444333333 2358999999999999999999999999999999998 67776655544433
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEcCCc
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFENGK 299 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~~g~ 299 (381)
.+.+++.+++++.+ ++++.. ++ +.+.+|+
T Consensus 223 ---------------------------------------------~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~ 257 (461)
T PRK05249 223 ---------------------------------------------SYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK 257 (461)
T ss_pred ---------------------------------------------HHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC
Confidence 33345667888876 777763 33 4456788
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+|++|.+.
T Consensus 258 ~i~~D~vi~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 258 KIKADCLLYANGRTGNTDGLNL-ENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred EEEeCEEEEeecCCccccCCCc-hhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9999999999999999965433 33666 6788999998 567788999999999987654 7999999999999864
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=282.17 Aligned_cols=300 Identities=17% Similarity=0.199 Sum_probs=205.7
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCCee-eecC------Cc---ccccCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK-KRAYDRMK-LHLA------KQ---FCELPHMPFPS 68 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~-~~~~------~~---~~~~~~~~~~~ 68 (381)
|+ +|||+||||||+|++||..|+++|.+|+|||+. .+||++. ..+.+... .... .. .+++.......
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 54 699999999999999999999999999999986 6777543 33333211 0000 00 00111000000
Q ss_pred CCCCCCC-HH----HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 69 RTPTFVP-RI----SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 69 ~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++..... .. .+.+.+++.+++.+++++.+. +..++ . .. |++ ++ ..+.||+||+|||+.|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~--~--~~--v~~-~g-----~~~~~d~lViATGs~p~~p 146 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD--A--HT--VEV-NG-----ERYTADHILIATGGRPSIP 146 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CE--EEE-CC-----EEEEeCEEEEecCCCCCCC
Confidence 1111111 11 122333444555677766543 43332 1 23 555 33 5799999999999999999
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++||.+. +.++....... ..+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .+++..+.++...+
T Consensus 147 ~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l------ 214 (450)
T PRK06116 147 DIPGAEY----GITSDGFFALE-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDPDIRETL------ 214 (450)
T ss_pred CCCCcce----eEchhHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCHHHHHHH------
Confidence 9888653 23333333322 257999999999999999999999999999999988 55555444333222
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C---eEEEc
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N---EVEFE 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~---~v~~~ 296 (381)
.+.+++.+++++.+ |.++.. + .+.+.
T Consensus 215 -----------------------------------------------~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~ 247 (450)
T PRK06116 215 -----------------------------------------------VEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLE 247 (450)
T ss_pred -----------------------------------------------HHHHHHCCcEEECCCEEEEEEEcCCceEEEEEc
Confidence 34456678888877 777753 2 35567
Q ss_pred CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 297 NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+|+++++|.+++|+|++|+...+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+|++|
T Consensus 248 ~g~~i~~D~Vv~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i 325 (450)
T PRK06116 248 DGETLTVDCLIWAIGREPNTDGLGL-ENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERL 325 (450)
T ss_pred CCcEEEeCEEEEeeCCCcCCCCCCc-hhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHH
Confidence 8889999999999999999975433 33566 7788999999 567789999999999987644 8999999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 326 ~g~ 328 (450)
T PRK06116 326 FNN 328 (450)
T ss_pred hCC
Confidence 863
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=280.40 Aligned_cols=303 Identities=14% Similarity=0.144 Sum_probs=204.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEec---------CCCCCCCcC-CCCCCCeee-ecCCccc---ccCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILER---------EDCSASLWK-KRAYDRMKL-HLAKQFC---ELPHMPFPS 68 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~---------~~~~g~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~ 68 (381)
+|||+||||||+|+.+|..+++.|.+|+|||+ ...+||++. ..+++.-.+ ....... ....+-...
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 48999999999999999999999999999996 356788543 344442221 1110000 000000000
Q ss_pred CCCCCCCHHHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 69 RTPTFVPRISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 69 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
..........+. ..++.+++..+++++.+ ++..++. ..+.|...++ +...+.||+||+|||
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g---~~~~~~~d~LIIATG 176 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDG---TKLRYTAKHILIATG 176 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCC---cEEEEEcCEEEEecC
Confidence 000011222222 22233344456554433 3333322 4556666554 224689999999999
Q ss_pred CCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 138 ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
+.|..|.+||.+. ..++.+.... ...+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .+++..+.++...+
T Consensus 177 s~p~~p~ipG~~~----~~~~~~~~~l-~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~~~~l 250 (499)
T PLN02507 177 SRAQRPNIPGKEL----AITSDEALSL-EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-LPLRGFDDEMRAVV 250 (499)
T ss_pred CCCCCCCCCCccc----eechHHhhhh-hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-CcCcccCHHHHHHH
Confidence 9999999988643 1222222222 2247899999999999999999999999999999988 56665555444333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce-
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE- 292 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~- 292 (381)
.+.+++.+|+++.+ ++++.. ++
T Consensus 251 -----------------------------------------------------~~~l~~~GI~i~~~~~V~~i~~~~~~~ 277 (499)
T PLN02507 251 -----------------------------------------------------ARNLEGRGINLHPRTNLTQLTKTEGGI 277 (499)
T ss_pred -----------------------------------------------------HHHHHhCCCEEEeCCEEEEEEEeCCeE
Confidence 33345667888877 777753 23
Q ss_pred -EEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 293 -VEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 293 -v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
+.+.+|+++++|.+++++|++|++..+.. +..++ ++++|++.+| +.++|+.|||||+|||.+... .|..||+.
T Consensus 278 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l-~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~ 355 (499)
T PLN02507 278 KVITDHGEEFVADVVLFATGRAPNTKRLNL-EAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRINLTPVALMEGTC 355 (499)
T ss_pred EEEECCCcEEEcCEEEEeecCCCCCCCCCc-hhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCCccHHHHHHHHHH
Confidence 55567888999999999999999965432 33666 7788999999 567799999999999997654 88999999
Q ss_pred HHHHhhh
Q 035902 368 IANDINL 374 (381)
Q Consensus 368 ~a~~i~~ 374 (381)
+|+||.+
T Consensus 356 aa~ni~g 362 (499)
T PLN02507 356 FAKTVFG 362 (499)
T ss_pred HHHHHcC
Confidence 9999975
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=279.07 Aligned_cols=288 Identities=18% Similarity=0.211 Sum_probs=220.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+||||||||++||.+|++.|++++||++. +||.|.... .+..++.+ ......++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~----------~~~~~~~~-------~~~~~~~l~~~ 271 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM----------GIENFISV-------PETEGPKLAAA 271 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC----------cccccCCC-------CCCCHHHHHHH
Confidence 489999999999999999999999999999864 777654210 00011111 13456789999
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.+++++++++++++|.+++..+ +.|.+.+.++ ..+.||.||+|||+.++.+.+||.+.+.+..++.+...
T Consensus 272 l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~g-----~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~ 344 (517)
T PRK15317 272 LEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELANG-----AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHC 344 (517)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECCC-----CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeecc
Confidence 9999999999999999999998865 5677877665 57999999999999999888998766666656655555
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|||+|.+|+|+|..|+..+.+|+++.|.+ .+.+. ..
T Consensus 345 ~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~-~l~~~------~~-------------------------- 391 (517)
T PRK15317 345 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP-ELKAD------QV-------------------------- 391 (517)
T ss_pred CchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc-ccccc------HH--------------------------
Confidence 5555578999999999999999999999999999999887 22110 00
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhc-CCCeEEccC--cceEeCC-----eEEEc---CC--cEeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR-KGEIQVFPS--ITSINRN-----EVEFE---NG--KIEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--v~~v~~~-----~v~~~---~g--~~~~~D~vi~a 309 (381)
+.+.+. ..+|+++.+ +.++.++ .+.+. ++ +++++|.++++
T Consensus 392 ---------------------------l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~ 444 (517)
T PRK15317 392 ---------------------------LQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQ 444 (517)
T ss_pred ---------------------------HHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEe
Confidence 122223 257888887 7777655 24444 23 36899999999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccccCC
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~~~ 380 (381)
+|++|+++ ++. . .-.++++|++.+| +..+|+.|||||+||+++.+. .|+.+|..+|.++..+|...+
T Consensus 445 ~G~~p~~~-~l~-~-~v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 445 IGLVPNTE-WLK-G-TVELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred ECCccCch-HHh-h-heeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 99999985 444 3 3226778999998 567789999999999987643 999999999999999887653
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=280.71 Aligned_cols=300 Identities=17% Similarity=0.220 Sum_probs=203.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCC-eeeecCCcc-----cccCCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDR-MKLHLAKQF-----CELPHMPFPSRTPTF 73 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~ 73 (381)
|.+|||+||||||+|++||..+++.|.+|+|||+. .+||.+ +..+.+. ......... ......+.+.. ..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~--~~ 79 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP--VS 79 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc--Cc
Confidence 45699999999999999999999999999999996 456643 3333322 111100000 00011110000 01
Q ss_pred CCHHHHH-----------HHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 74 VPRISFI-----------NYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 74 ~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.+..++. ..+...+++. +++++.++.+. .+ .+. +..+ + ..+.||+||+|||+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~--~~~--v~v~-~-----~~~~~d~lViATGs~p~ 146 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ES--PNT--VRVG-G-----ETLRAKRIFINTGARAA 146 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---cc--CCE--EEEC-c-----EEEEeCEEEEcCCCCCC
Confidence 1222222 2333444444 67766655431 11 133 4442 2 57999999999999999
Q ss_pred CCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhC
Q 035902 142 IPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFL 221 (381)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l 221 (381)
.|++||.+.. .++++.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.++...+
T Consensus 147 ~p~i~G~~~~--~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~~~~~~l---- 218 (463)
T PRK06370 147 IPPIPGLDEV--GYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDEDVAAAV---- 218 (463)
T ss_pred CCCCCCCCcC--ceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCHHHHHHH----
Confidence 9999997642 244444443322 357999999999999999999999999999999998 67666554433332
Q ss_pred cHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEE
Q 035902 222 PCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEF 295 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~ 295 (381)
.+.+++.+++++.+ +.+++.+ + +.+
T Consensus 219 -------------------------------------------------~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~ 249 (463)
T PRK06370 219 -------------------------------------------------REILEREGIDVRLNAECIRVERDGDGIAVGL 249 (463)
T ss_pred -------------------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE
Confidence 33446678888876 7777643 2 333
Q ss_pred c---CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 296 E---NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 296 ~---~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
. +++++++|.+|+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+
T Consensus 250 ~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l-~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~a 327 (463)
T PRK06370 250 DCNGGAPEITGSHILVAVGRVPNTDDLGL-EAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIV 327 (463)
T ss_pred EeCCCceEEEeCEEEECcCCCcCCCCcCc-hhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 2 3457999999999999999974422 33666 7888999998 567789999999999987654 889999999
Q ss_pred HHHhhhc
Q 035902 369 ANDINLA 375 (381)
Q Consensus 369 a~~i~~~ 375 (381)
|+||.+.
T Consensus 328 a~ni~~~ 334 (463)
T PRK06370 328 AANLLDG 334 (463)
T ss_pred HHHHhCC
Confidence 9999864
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=279.35 Aligned_cols=299 Identities=15% Similarity=0.183 Sum_probs=205.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCeee-ecCCccc---ccCCCCC-----CCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRMKL-HLAKQFC---ELPHMPF-----PSRTPT 72 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~~-~~~~~~~---~~~~~~~-----~~~~~~ 72 (381)
+|||+||||||||++||..+++.|.+|+|+|+. .+||.. +..+.+.-.+ ....... ....+.. ..++..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 589999999999999999999999999999995 677743 3333332211 1110000 0011100 001111
Q ss_pred CCC-----HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 73 FVP-----RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 73 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
... -.++.++++..+++.+++++.+ ++..++. ....+. .++ ..++||+||+|||+.|..|++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~-~~g-----~~~~~d~lIiATGs~p~~p~i~G 149 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVL-QDG-----TTYTAKKILIAVGGRPQKPNLPG 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEe-cCC-----eEEEcCEEEEecCCcCCCCCCCC
Confidence 111 1123445556666778776544 5554532 233332 233 57999999999999999998988
Q ss_pred CCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 148 LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
.+. ...+.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .+++..+.++...+
T Consensus 150 ~~~----~~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~~~~l---------- 213 (446)
T TIGR01424 150 HEL----GITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDDDMRALL---------- 213 (446)
T ss_pred ccc----eechHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCHHHHHHH----------
Confidence 653 1222222222 2247899999999999999999999999999999988 56665444433332
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--eEEEcCCcEe
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N--EVEFENGKIE 301 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~--~v~~~~g~~~ 301 (381)
.+.+++.+++++.+ +++++. + .+.+.+++++
T Consensus 214 -------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i 250 (446)
T TIGR01424 214 -------------------------------------------ARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEI 250 (446)
T ss_pred -------------------------------------------HHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEe
Confidence 33345678888877 777753 2 3556678899
Q ss_pred eccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 302 EFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 302 ~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
++|.+++|+|++|+++.+.. +..++ ++++|++.+| +.++|+.|||||+|||++... .|..||+.+|++|.+
T Consensus 251 ~~D~viva~G~~pn~~~l~l-~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 251 VADVVLFATGRSPNTKGLGL-EAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred ecCEEEEeeCCCcCCCcCCc-cccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhc
Confidence 99999999999999865433 33666 7788999999 567889999999999997654 889999999999986
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=274.96 Aligned_cols=284 Identities=19% Similarity=0.244 Sum_probs=203.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCC-CCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPT-FVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (381)
++|+|||||+||+.+|..|++. +.+|+|||++++++ |... ..+.+ ... .....++.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~--------------~lp~~-----~~~~~~~~~~~~ 60 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANC--------------ALPYY-----IGEVVEDRKYAL 60 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccC--------------Ccchh-----hcCccCCHHHcc
Confidence 4799999999999999999987 56999999997543 1110 00000 001 11122222
Q ss_pred HHH-HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecC
Q 035902 81 NYV-DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~ 159 (381)
.+. +++.++.+++++.+++|.+++.++ +. |.+.++..++..++.||+||+|||+.|..|.+++. .++...
T Consensus 61 ~~~~~~~~~~~~i~v~~~~~V~~Id~~~--~~--v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~-----~~~~~~ 131 (438)
T PRK13512 61 AYTPEKFYDRKQITVKTYHEVIAINDER--QT--VTVLNRKTNEQFEESYDKLILSPGASANSLGFESD-----ITFTLR 131 (438)
T ss_pred cCCHHHHHHhCCCEEEeCCEEEEEECCC--CE--EEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCC-----CeEEec
Confidence 222 234456789998999999998866 55 55555432233468999999999999987765431 122222
Q ss_pred CCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 160 KYENG-------GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 160 ~~~~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
...+. ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+++..+.++...+
T Consensus 132 ~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~~~~~~l--------------- 195 (438)
T PRK13512 132 NLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQPI--------------- 195 (438)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCHHHHHHH---------------
Confidence 21111 12247899999999999999999999999999999988 56665544433332
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEcCCcEeeccEEEEec
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFENGKIEEFEAIIFAT 310 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~ 310 (381)
.+.+++.+|+++.+ +++++...+.+++|+++++|.+++|+
T Consensus 196 --------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~ 237 (438)
T PRK13512 196 --------------------------------------LDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGV 237 (438)
T ss_pred --------------------------------------HHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECc
Confidence 34456778888877 88888878888889899999999999
Q ss_pred CCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhhc
Q 035902 311 GYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINLA 375 (381)
Q Consensus 311 G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~~ 375 (381)
|++||++. +. . .++ ++++|++.+| +.++++.|||||+|||++.. ..|..||+.+|+||.+.
T Consensus 238 G~~pn~~~-l~-~-~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 238 GTHPNSKF-IE-S-SNIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred CCCcChHH-HH-h-cCcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 99999864 44 3 565 6778999998 56778999999999997521 15788999999999863
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=277.12 Aligned_cols=286 Identities=20% Similarity=0.265 Sum_probs=213.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+||||||||++||..|++.|.+|+||++ .+||.+... ..+..+... + .....++.+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~----------~~~~~~~~~------~-~~~~~~l~~~ 272 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT----------VGIENLISV------P-YTTGSQLAAN 272 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC----------cCccccccc------C-CCCHHHHHHH
Confidence 38999999999999999999999999999985 467654321 000011111 1 1346678888
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.+++++++++.+++|.+++.++ +.+.+.+.++ ..+.||+||+|||+.+..|.+||...+.+...+.+...
T Consensus 273 l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~g-----~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~ 345 (515)
T TIGR03140 273 LEEHIKQYPIDLMENQRAKKIETED--GLIVVTLESG-----EVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHC 345 (515)
T ss_pred HHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECCC-----CEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeecc
Confidence 8888988999999999999998765 5677777665 57999999999999998888888654444444444333
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|||+|.+|+|+|..|+..+.+|+++.+.+ .+... ..
T Consensus 346 ~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~-~l~~~------~~-------------------------- 392 (515)
T TIGR03140 346 DGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD-ELKAD------KV-------------------------- 392 (515)
T ss_pred ChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC-cCChh------HH--------------------------
Confidence 3334468999999999999999999999999999999877 32110 00
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeCC-----eEEEcC---C--cEeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINRN-----EVEFEN---G--KIEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~~-----~v~~~~---g--~~~~~D~vi~a 309 (381)
..+.+++ .+|+++.+ ++++.++ ++.+.+ + +++++|.++++
T Consensus 393 ---------------------------l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a 445 (515)
T TIGR03140 393 ---------------------------LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQ 445 (515)
T ss_pred ---------------------------HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEE
Confidence 1223333 57888877 7777654 355543 2 47899999999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+|++|+++ ++. . .--++.+|++.+| +.++|+.|||||+|||++.+. .|+.+|..+|.+|.++|..
T Consensus 446 ~G~~Pn~~-~l~-~-~~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 446 IGLVPNTE-WLK-D-AVELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred eCCcCCch-HHh-h-hcccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 99999986 344 3 3126678999998 567789999999999987543 9999999999999988753
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=274.82 Aligned_cols=305 Identities=15% Similarity=0.148 Sum_probs=201.8
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCee-eecCCccccc---CCCCCCCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRMK-LHLAKQFCEL---PHMPFPSRTPTFV 74 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~ 74 (381)
|+ +|||+||||||+|+.+|..+++.|.+|+|||+.+.+||++ +..+++... ......+... ..+-.... ....
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~ 79 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKI 79 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCc
Confidence 54 6999999999999999999999999999999987788843 333443311 1111000000 00000000 0011
Q ss_pred CHHHHHH-----------HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC-
Q 035902 75 PRISFIN-----------YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI- 142 (381)
Q Consensus 75 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~- 142 (381)
+...+.+ .+...+++.+++++.+. +..+ + .+...|...++ +...+.||+||+|||+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~--~--~~~v~v~~~~g---~~~~~~~d~lViATGs~p~~~ 151 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT--G--GNTLEVTGEDG---KTTVIEFDNAIIAAGSRPIQL 151 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--c--CCEEEEecCCC---ceEEEEcCEEEEeCCCCCCCC
Confidence 1222222 22234455577765443 2222 2 24444443332 23579999999999999874
Q ss_pred CCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCc
Q 035902 143 PEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLP 222 (381)
Q Consensus 143 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~ 222 (381)
|.+++.. ..++.+.+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+.++...+.+.+
T Consensus 152 p~~~~~~---~~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~~~~~~~~~~l- 225 (471)
T PRK06467 152 PFIPHDD---PRIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADKDIVKVFTKRI- 225 (471)
T ss_pred CCCCCCC---CcEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCHHHHHHHHHHH-
Confidence 4444422 12444444443332 57999999999999999999999999999999998 777876665554443333
Q ss_pred HHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEc
Q 035902 223 CKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFE 296 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~ 296 (381)
++. ++++.+ ++++.. ++ +.+.
T Consensus 226 ----------------------------------------------------~~~-v~i~~~~~v~~i~~~~~~~~v~~~ 252 (471)
T PRK06467 226 ----------------------------------------------------KKQ-FNIMLETKVTAVEAKEDGIYVTME 252 (471)
T ss_pred ----------------------------------------------------hhc-eEEEcCCEEEEEEEcCCEEEEEEE
Confidence 334 666665 666652 33 3333
Q ss_pred C--C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 297 N--G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 297 ~--g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
+ + +++++|.+++++|++||++.+.. ...++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+
T Consensus 253 ~~~~~~~~i~~D~vi~a~G~~pn~~~l~~-~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~a 330 (471)
T PRK06467 253 GKKAPAEPQRYDAVLVAVGRVPNGKLLDA-EKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVA 330 (471)
T ss_pred eCCCcceEEEeCEEEEeecccccCCccCh-hhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHHHHHHHHHH
Confidence 3 2 46999999999999999976544 44666 7889999998 567789999999999987654 899999999
Q ss_pred HHHhhhc
Q 035902 369 ANDINLA 375 (381)
Q Consensus 369 a~~i~~~ 375 (381)
|++|.+.
T Consensus 331 a~~i~g~ 337 (471)
T PRK06467 331 AEVIAGK 337 (471)
T ss_pred HHHHcCC
Confidence 9999864
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=273.25 Aligned_cols=301 Identities=19% Similarity=0.242 Sum_probs=202.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCeeeecCCcccc----cCCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRMKLHLAKQFCE----LPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 77 (381)
+|||+||||||||++||..+++.|.+|+|||+.. +||.| +..+.+.-.+......+. ...+..... .......
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 81 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDFK 81 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCHH
Confidence 5899999999999999999999999999999987 88854 444444321111111100 011100000 1112333
Q ss_pred HHHHH-----------HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 78 SFINY-----------VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 78 ~~~~~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
++.++ ++..+++.+++++.++ +..++ .....+...++ ...+.||+||+|||+.|..| |
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~----~~~~~v~~~~~----~~~~~~d~lViAtGs~p~~~--p 150 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVD----PNTVRVMTEDG----EQTYTAKNIILATGSRPREL--P 150 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc----CCEEEEecCCC----cEEEEeCEEEEeCCCCCCCC--C
Confidence 44443 3444555677765543 33332 13433443222 15799999999999998754 4
Q ss_pred CCCCCCcc-eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 147 GLGSFEGE-YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 147 g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
|.+. .+. +++..+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+
T Consensus 151 g~~~-~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l-------- 219 (462)
T PRK06416 151 GIEI-DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDKEISKLA-------- 219 (462)
T ss_pred CCCC-CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCHHHHHHH--------
Confidence 5542 232 333333332 22357999999999999999999999999999999988 67776554443333
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCC-
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENG- 298 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g- 298 (381)
.+.+++.+++++.+ +++++.+ . +.+.++
T Consensus 220 ---------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg 254 (462)
T PRK06416 220 ---------------------------------------------ERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGG 254 (462)
T ss_pred ---------------------------------------------HHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCC
Confidence 33345667888877 7777653 3 344555
Q ss_pred --cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 299 --KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 299 --~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+++++|.+|+|+|++|+...+.. +..++ ++ +|++.+| +.++++.|+|||+|||...+. .|..||+.+|+||
T Consensus 255 ~~~~i~~D~vi~a~G~~p~~~~l~l-~~~gl~~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni 331 (462)
T PRK06416 255 KEETLEADYVLVAVGRRPNTENLGL-EELGVKTD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAI 331 (462)
T ss_pred eeEEEEeCEEEEeeCCccCCCCCCc-hhcCCeec-CCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHH
Confidence 67999999999999999865422 33566 56 8999998 566789999999999987543 8999999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 332 ~~~ 334 (462)
T PRK06416 332 AGN 334 (462)
T ss_pred cCC
Confidence 874
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=271.79 Aligned_cols=308 Identities=16% Similarity=0.204 Sum_probs=196.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCCeeeecCCccc-c----cCCCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-WKKRAYDRMKLHLAKQFC-E----LPHMPFPSRTPTFV 74 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~ 74 (381)
|++|||+||||||||++||..+++.|.+|+|||++ .+||. .+..+.+.-.+-...... . ...+.... ....
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~ 78 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTF 78 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--Cccc
Confidence 44699999999999999999999999999999986 45663 333333321100000000 0 00000000 0011
Q ss_pred CHHHHHHHHHHHHHHh--CCccccc-cEEEEEEE----eCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 75 PRISFINYVDNYVSQM--GINPRYH-RSVESASY----DENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~i~~----~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
....+....++..++. ++...+. ..|+.++- .+ .+.+.+...++ +..+++||+||+|||+.|..| ||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~-~~~v~v~~~~g---~~~~~~~d~lViATGs~p~~~--pg 152 (466)
T PRK07818 79 DYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD-ANTLEVDLNDG---GTETVTFDNAIIATGSSTRLL--PG 152 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC-CCEEEEEecCC---CeeEEEcCEEEEeCCCCCCCC--CC
Confidence 2222222222111110 1111111 12222221 11 24444443332 235799999999999998754 55
Q ss_pred CCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 148 LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
.+. .+.++.+.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.++...+
T Consensus 153 ~~~-~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~l---------- 219 (466)
T PRK07818 153 TSL-SENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVSKEI---------- 219 (466)
T ss_pred CCC-CCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHHHHH----------
Confidence 432 2334444332222 2357899999999999999999999999999999988 77777655544333
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEc--CC-
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFE--NG- 298 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~--~g- 298 (381)
.+.+++.+|+++.+ |++++++ . +.+. +|
T Consensus 220 -------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~ 256 (466)
T PRK07818 220 -------------------------------------------AKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGK 256 (466)
T ss_pred -------------------------------------------HHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCC
Confidence 33446678888877 7777653 2 3443 56
Q ss_pred -cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhh
Q 035902 299 -KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDIN 373 (381)
Q Consensus 299 -~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~ 373 (381)
+++++|.+++|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+|++|.
T Consensus 257 ~~~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 257 AQELEADKVLQAIGFAPRVEGYGL-EKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred eEEEEeCEEEECcCcccCCCCCCc-hhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHc
Confidence 47999999999999999975433 43666 6778999998 567789999999999987644 89999999999998
Q ss_pred hc
Q 035902 374 LA 375 (381)
Q Consensus 374 ~~ 375 (381)
+.
T Consensus 335 g~ 336 (466)
T PRK07818 335 GA 336 (466)
T ss_pred CC
Confidence 64
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=261.07 Aligned_cols=289 Identities=18% Similarity=0.222 Sum_probs=215.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|..++|||||||++|+.+|..|.++. .++++||+++...- ... +........+..+
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~---------------------~pl-L~eva~g~l~~~~ 58 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF---------------------TPL-LYEVATGTLSESE 58 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc---------------------chh-hhhhhcCCCChhh
Confidence 55689999999999999999999985 88999999873210 000 0001122344456
Q ss_pred HHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 79 FINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
+.-.++..+++.+ +++ ...+|++|+.+. +. |.++++ ..+.||+||+|+|+.+..+.+||..++.-....
T Consensus 59 i~~p~~~~~~~~~~v~~-~~~~V~~ID~~~--k~--V~~~~~-----~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks 128 (405)
T COG1252 59 IAIPLRALLRKSGNVQF-VQGEVTDIDRDA--KK--VTLADL-----GEISYDYLVVALGSETNYFGIPGAAEYAFGLKT 128 (405)
T ss_pred eeccHHHHhcccCceEE-EEEEEEEEcccC--CE--EEeCCC-----ccccccEEEEecCCcCCcCCCCCHHHhCCCCCC
Confidence 6666677776544 443 456799999876 66 888774 689999999999999999999997765322111
Q ss_pred cCCCC----------CCCC-CC----CCeEEEEcCCCCHHHHHHHHhhCC-------------CeeEEEEecCcceechh
Q 035902 158 SSKYE----------NGGK-FI----GKNVLVVGCGNSGMEIAYDLSSCG-------------ACTSIVVRGPVHVLTRE 209 (381)
Q Consensus 158 ~~~~~----------~~~~-~~----~~~v~viG~G~~~~e~a~~l~~~g-------------~~v~~i~r~~~~~~p~~ 209 (381)
..+.. ...+ .. .-.++|+|+|++|+|+|.+|+++. .+|+++.+.+ .++|..
T Consensus 129 ~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ILp~~ 207 (405)
T COG1252 129 LEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RILPMF 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hhccCC
Confidence 11110 0001 11 136999999999999999998742 2899999999 888888
Q ss_pred hHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cce
Q 035902 210 IVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITS 287 (381)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~ 287 (381)
..++...+.+. +++.+|+++.+ |++
T Consensus 208 ~~~l~~~a~~~-----------------------------------------------------L~~~GV~v~l~~~Vt~ 234 (405)
T COG1252 208 PPKLSKYAERA-----------------------------------------------------LEKLGVEVLLGTPVTE 234 (405)
T ss_pred CHHHHHHHHHH-----------------------------------------------------HHHCCCEEEcCCceEE
Confidence 77766665444 47789999988 999
Q ss_pred EeCCeEEEcCCcE-eeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc------c
Q 035902 288 INRNEVEFENGKI-EEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL------H 359 (381)
Q Consensus 288 v~~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~------~ 359 (381)
+++++|++.+|+. +++|.+|||+|.++++ +.+ +..+. .|..|++.++......+.|+||++|||+... .
T Consensus 235 v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~--~~~-~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~ 311 (405)
T COG1252 235 VTPDGVTLKDGEEEIPADTVVWAAGVRASP--LLK-DLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPP 311 (405)
T ss_pred ECCCcEEEccCCeeEecCEEEEcCCCcCCh--hhh-hcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCC
Confidence 9999999999984 9999999999999986 344 31244 5778999999545557999999999997543 2
Q ss_pred ---CccHHHHHHHHHhhhcccc
Q 035902 360 ---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~l~~ 378 (381)
.|+.||..+|+||...++.
T Consensus 312 tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 312 TAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999998875
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=270.66 Aligned_cols=306 Identities=16% Similarity=0.175 Sum_probs=197.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCCee-eecCCcccccCC---CCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-WKKRAYDRMK-LHLAKQFCELPH---MPFPSRTPTFVP 75 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 75 (381)
|++|||+||||||||+.||..+++.|.+|+|||+...+||. .+..+.+... ......+..... ..+.........
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 77899999999999999999999999999999987778884 3333333221 111110100000 000000000111
Q ss_pred HHHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 76 RISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 76 ~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
...+. ..++...++.+++++.+. . ...+ ...+.|...++ +...++||+||||||+.|. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a--~~~~-~~~v~v~~~~g---~~~~~~~d~lVIATGs~p~--~ 150 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW--G--RLDG-VGKVVVKAEDG---SETQLEAKDIVIATGSEPT--P 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--E--EEcc-CCEEEEEcCCC---ceEEEEeCEEEEeCCCCCC--C
Confidence 11111 122233334455544332 1 2222 23444444343 2247999999999999975 3
Q ss_pred CCCCCCCCcc-eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 145 VPGLGSFEGE-YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 145 ~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
+||.+. .+. ++++...... ...+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+.++...+
T Consensus 151 ipg~~~-~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~~~~~~l------ 221 (466)
T PRK06115 151 LPGVTI-DNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDTETAKTL------ 221 (466)
T ss_pred CCCCCC-CCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCHHHHHHH------
Confidence 566542 222 3443333332 2358999999999999999999999999999999988 67776554433333
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eE--EEc-
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EV--EFE- 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v--~~~- 296 (381)
.+.+++.+|+++.+ ++++..+ ++ .+.
T Consensus 222 -----------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~ 254 (466)
T PRK06115 222 -----------------------------------------------QKALTKQGMKFKLGSKVTGATAGADGVSLTLEP 254 (466)
T ss_pred -----------------------------------------------HHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEE
Confidence 33445678888877 7777642 33 332
Q ss_pred --C--CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 297 --N--GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 297 --~--g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
+ ++++++|.|++++|++||+..+.. +..++ ++..| +.+| +.++|+.|+|||+|||++.+. .|..||+.+
T Consensus 255 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~~~g~~~~~~G-~~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~a 331 (466)
T PRK06115 255 AAGGAAETLQADYVLVAIGRRPYTQGLGL-ETVGLETDKRG-MLAN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVAC 331 (466)
T ss_pred cCCCceeEEEeCEEEEccCCccccccCCc-ccccceeCCCC-EEEC-CCeecCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 2 357999999999999999864433 43555 56667 4566 467799999999999998754 899999999
Q ss_pred HHHhhhc
Q 035902 369 ANDINLA 375 (381)
Q Consensus 369 a~~i~~~ 375 (381)
|+||.+.
T Consensus 332 a~~i~~~ 338 (466)
T PRK06115 332 IERIAGK 338 (466)
T ss_pred HHHHcCC
Confidence 9999864
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=272.68 Aligned_cols=287 Identities=20% Similarity=0.304 Sum_probs=207.9
Q ss_pred CCc-ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHH
Q 035902 1 MEE-VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISF 79 (381)
Q Consensus 1 M~~-~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (381)
|++ |||+||||||||++||..|++.|++|+|||++ .+||.+... .....++.. ...+..++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~----------~~i~~~pg~-------~~~~~~~l 62 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITIT----------SEVVNYPGI-------LNTTGPEL 62 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEec----------cccccCCCC-------cCCCHHHH
Confidence 654 89999999999999999999999999999996 466543211 000011111 12345688
Q ss_pred HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecC
Q 035902 80 INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~ 159 (381)
.+++++.++++++++ .+++|.+++.++ ..+.+.+.++ .+.|++||+|||++|..|++||.+.+.+..++.+
T Consensus 63 ~~~l~~~~~~~gv~~-~~~~V~~i~~~~--~~~~V~~~~g------~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~ 133 (555)
T TIGR03143 63 MQEMRQQAQDFGVKF-LQAEVLDVDFDG--DIKTIKTARG------DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYC 133 (555)
T ss_pred HHHHHHHHHHcCCEE-eccEEEEEEecC--CEEEEEecCC------EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEE
Confidence 888888888889886 477888888754 4556666543 5889999999999999999999765544445554
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 160 KYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 160 ~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
..++...+.+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .+... .. .
T Consensus 134 ~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~-~~~~~--~~----~---------------------- 184 (555)
T TIGR03143 134 ATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP-DFTCA--KL----I---------------------- 184 (555)
T ss_pred eecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC-ccccC--HH----H----------------------
Confidence 4444445578999999999999999999999999999999987 22110 00 0
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe----EEE---cCCcEe----eccE-
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE----VEF---ENGKIE----EFEA- 305 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~----v~~---~~g~~~----~~D~- 305 (381)
.....+..+|+++.+ |+++.++. +.+ .+|+.. ++|.
T Consensus 185 ------------------------------~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~ 234 (555)
T TIGR03143 185 ------------------------------AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAG 234 (555)
T ss_pred ------------------------------HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEecccccc
Confidence 011123457888776 77776542 222 346532 3666
Q ss_pred ---EEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc----ccCccHHHHHHHHHhhhccc
Q 035902 306 ---IIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG----LHGISIDAKNIANDINLALT 377 (381)
Q Consensus 306 ---vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~----~~~a~~~a~~~a~~i~~~l~ 377 (381)
|++++|++|++. ++. . ++ ++++|++.+| +.++++.|||||+|||... ...|+.||..+|.+|..+|.
T Consensus 235 ~~~Vi~a~G~~Pn~~-l~~-~--~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 235 TFGVFVFVGYAPSSE-LFK-G--VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred ceEEEEEeCCCCChh-HHh-h--hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHH
Confidence 999999999996 344 2 33 6778999998 5677889999999999643 23899999999999998874
Q ss_pred c
Q 035902 378 D 378 (381)
Q Consensus 378 ~ 378 (381)
.
T Consensus 310 ~ 310 (555)
T TIGR03143 310 E 310 (555)
T ss_pred h
Confidence 3
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=270.18 Aligned_cols=304 Identities=17% Similarity=0.213 Sum_probs=201.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeee-ecCCcccccCCCCCCCCCC---CCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKL-HLAKQFCELPHMPFPSRTP---TFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~ 77 (381)
++||+||||||||+++|..|++.|.+|+|||+. .+||+|.+ .+.+.-.+ ............++...++ .-.+..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 499999999999999999999999999999996 58887754 22221110 0000000000011000000 012233
Q ss_pred HHHHHHHHHHH------------Hh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 78 SFINYVDNYVS------------QM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 78 ~~~~~~~~~~~------------~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.++.++... ++ +++++. .++..++ ...+.|++.++ +..+++||+||+|||+.|..|+
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~-g~v~~id----~~~~~V~~~~g---~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLN-GEARFVD----ERTLTVTLNDG---GEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEE-EEEEEec----CCEEEEEecCC---CeEEEECCEEEEeCCCCCCCCC
Confidence 44333332221 22 344332 2444443 24577887664 2257999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||++... .+++.+.... ...+++++|||+|.+|+|+|..|.+.|.+|+++.+. .++|..+.++...+
T Consensus 157 i~G~~~~~--~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~~~~~~l------- 224 (468)
T PRK14694 157 VPGLAETP--YLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDPAVGEAI------- 224 (468)
T ss_pred CCCCCCCc--eEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCHHHHHHH-------
Confidence 99986532 3443333222 234799999999999999999999999999999864 45565444433333
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEE-cCCc
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEF-ENGK 299 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~-~~g~ 299 (381)
.+.+++.+|+++.+ +.++..+ .+.+ .++.
T Consensus 225 ----------------------------------------------~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~ 258 (468)
T PRK14694 225 ----------------------------------------------EAAFRREGIEVLKQTQASEVDYNGREFILETNAG 258 (468)
T ss_pred ----------------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC
Confidence 33446678888876 7777543 2322 2344
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|.+|+...+.. +..++..++|++.+| +.++++.|||||+|||++.+. .|..||+.+|.+|.+.
T Consensus 259 ~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 259 TLRAEQLLVATGRTPNTENLNL-ESIGVETERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred EEEeCEEEEccCCCCCcCCCCc-hhcCcccCCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 7999999999999999965432 335664468899998 567789999999999987655 8889999999999753
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=269.44 Aligned_cols=306 Identities=14% Similarity=0.171 Sum_probs=202.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHhC-CCCeEEEecC--------CCCCC-CcCCCCCCC-eeeecCCccccc---CCC---
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNL-SVPNIILERE--------DCSAS-LWKKRAYDR-MKLHLAKQFCEL---PHM--- 64 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~--------~~~g~-~~~~~~~~~-~~~~~~~~~~~~---~~~--- 64 (381)
.+|||+||||||+|..+|..+++. |.+|+|||+. ..+|| +.+..+.+. ............ ..+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 369999999999999999999997 8999999974 45777 344444332 211111100000 000
Q ss_pred ----CCCCCCCCCCC-HHHHHHH----HHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEee---cCCCceEEEEeCE
Q 035902 65 ----PFPSRTPTFVP-RISFINY----VDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKN---TALDAYEEYVARY 131 (381)
Q Consensus 65 ----~~~~~~~~~~~-~~~~~~~----~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~~~~~~~d~ 131 (381)
....++..... .+++.+. ..+.+++ .+++++.+. . ...+ .+. |.... +...+.+.+.||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a---~f~~-~~~--v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-G---ALED-KNV--VLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-E---EEcc-CCE--EEEeeccCCCCCcceEEECCE
Confidence 00011111111 1222222 2223333 255554432 1 1111 233 44432 1111135799999
Q ss_pred EEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhC---CCeeEEEEecCcceech
Q 035902 132 LVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSC---GACTSIVVRGPVHVLTR 208 (381)
Q Consensus 132 vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~---g~~v~~i~r~~~~~~p~ 208 (381)
||+|||+.|..|++||.+. +..+.+.... ...+++++|||+|.+|+|+|..+..+ |.+|+++.+.+ .++|.
T Consensus 155 lIIATGs~p~~p~i~G~~~----~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~il~~ 228 (486)
T TIGR01423 155 ILLATGSWPQMLGIPGIEH----CISSNEAFYL-DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-MILRG 228 (486)
T ss_pred EEEecCCCCCCCCCCChhh----eechhhhhcc-ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-ccccc
Confidence 9999999999999998753 2333333222 23579999999999999999877655 89999999998 67777
Q ss_pred hhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cc
Q 035902 209 EIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--IT 286 (381)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~ 286 (381)
.+.++...+.+ .+++.+++++.+ ++
T Consensus 229 ~d~~~~~~l~~-----------------------------------------------------~L~~~GI~i~~~~~v~ 255 (486)
T TIGR01423 229 FDSTLRKELTK-----------------------------------------------------QLRANGINIMTNENPA 255 (486)
T ss_pred cCHHHHHHHHH-----------------------------------------------------HHHHcCCEEEcCCEEE
Confidence 66655544433 345677888877 77
Q ss_pred eEeCC-----eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc-
Q 035902 287 SINRN-----EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH- 359 (381)
Q Consensus 287 ~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~- 359 (381)
++..+ .+.+.+++++++|.+++|+|++|++..+.. +..++ ++++|++.+| +.++|+.|||||+|||++.++
T Consensus 256 ~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l-~~~gl~~~~~G~I~Vd-~~l~Ts~~~IyA~GDv~~~~~l 333 (486)
T TIGR01423 256 KVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQL-DKVGVELTKKGAIQVD-EFSRTNVPNIYAIGDVTDRVML 333 (486)
T ss_pred EEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCc-hhhCceECCCCCEecC-CCCcCCCCCEEEeeecCCCccc
Confidence 77532 356678889999999999999999975433 43666 7788999999 566789999999999998755
Q ss_pred --CccHHHHHHHHHhhhc
Q 035902 360 --GISIDAKNIANDINLA 375 (381)
Q Consensus 360 --~a~~~a~~~a~~i~~~ 375 (381)
.|..||+.+|+||.+.
T Consensus 334 ~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 334 TPVAINEGAAFVDTVFGN 351 (486)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 8999999999999863
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=267.02 Aligned_cols=299 Identities=17% Similarity=0.192 Sum_probs=200.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC-CCCC-cCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC-SASL-WKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RI 77 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 77 (381)
|++|||+||||||||++||..|++.|.+|+|||+++. +||. .+..+.+...+-.... . ..++..... .+
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~--~~~~~~~~~~~~ 72 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------K--NLSFEQVMATKN 72 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------c--CCCHHHHHHHHH
Confidence 7789999999999999999999999999999999864 5663 3332222111000000 0 001111111 11
Q ss_pred HH----HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCc
Q 035902 78 SF----INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEG 153 (381)
Q Consensus 78 ~~----~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~ 153 (381)
.+ .....+.+.+.+++++.++. ..+ + .+. |....+. +...+.||+||+|||+.|..|++||.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~gV~~~~g~~-~~~--~--~~~--v~v~~~~--~~~~~~~d~vViATGs~~~~p~i~G~~~~~- 142 (438)
T PRK07251 73 TVTSRLRGKNYAMLAGSGVDLYDAEA-HFV--S--NKV--IEVQAGD--EKIELTAETIVINTGAVSNVLPIPGLADSK- 142 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEE-EEc--c--CCE--EEEeeCC--CcEEEEcCEEEEeCCCCCCCCCCCCcCCCC-
Confidence 11 11122334445666554332 111 1 233 4443321 125799999999999999999999975433
Q ss_pred ceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 154 EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
.++++....... ..+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+
T Consensus 143 ~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~---------------- 204 (438)
T PRK07251 143 HVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSVAALA---------------- 204 (438)
T ss_pred cEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHHHHHH----------------
Confidence 244443333322 357899999999999999999999999999999988 67776554433322
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEE-EcCCcEeeccEEEE
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVE-FENGKIEEFEAIIF 308 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~-~~~g~~~~~D~vi~ 308 (381)
.+.+++.+++++.+ +++++.+ .+. ..+++++++|.+++
T Consensus 205 -------------------------------------~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viv 247 (438)
T PRK07251 205 -------------------------------------KQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLY 247 (438)
T ss_pred -------------------------------------HHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEE
Confidence 23345667888876 7777643 333 34677899999999
Q ss_pred ecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 309 ATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
|+|++|+.+.+.. +..++ .+++|++.+| +.++++.|||||+|||.+.+. .|..+++.++.++.+
T Consensus 248 a~G~~p~~~~l~l-~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 248 ATGRKPNTEPLGL-ENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred eeCCCCCcccCCc-hhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 9999999865332 33455 5778999998 567789999999999998754 788899999988875
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=273.13 Aligned_cols=301 Identities=19% Similarity=0.224 Sum_probs=204.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeeeecCCcc--------cccCCCCCCCCCCCC-
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKLHLAKQF--------CELPHMPFPSRTPTF- 73 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 73 (381)
|||+||||||+|+++|..+++.|.+|+|||+.. +||.|.+ .+++...+...... ++........++...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999976 7776543 23332111000000 000000000111111
Q ss_pred CCHHHHHHH-----HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 74 VPRISFINY-----VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 74 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
...+++... +...+++++++++.++ +..+ + .. +|.+.++ ...+.||+||+|||+.|..|++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~---~-~~--~v~v~~g----~~~~~~~~lIiATGs~p~~p~i~G~ 148 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFK---D-PK--TVKVDLG----REVRGAKRFLIATGARPAIPPIPGL 148 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEc---c-CC--EEEEcCC----eEEEEeCEEEEcCCCCCCCCCCCCc
Confidence 112233332 2344566677765443 2221 1 12 3655443 2468999999999999999999997
Q ss_pred CCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 149 GSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
+... ++++.+..... ..+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|..+.++...+
T Consensus 149 ~~~~--~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~l----------- 213 (463)
T TIGR02053 149 KEAG--YLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEISAAV----------- 213 (463)
T ss_pred ccCc--eECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHHHHH-----------
Confidence 6542 34443433322 246999999999999999999999999999999998 67776655444333
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEc---CCc
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFE---NGK 299 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~---~g~ 299 (381)
.+.+++.+|+++.+ |++++.+ .+.++ +++
T Consensus 214 ------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~ 251 (463)
T TIGR02053 214 ------------------------------------------EEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQG 251 (463)
T ss_pred ------------------------------------------HHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCce
Confidence 33345667888877 7777643 23333 236
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++|+.+.+.. +..++ ++++|++.+| +.++|+.|||||+|||.+.+. .|..||+.+|++|.+.
T Consensus 252 ~i~~D~ViiA~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 252 EVEADELLVATGRRPNTDGLGL-EKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred EEEeCEEEEeECCCcCCCCCCc-cccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 8999999999999999974422 33666 7789999999 567889999999999998754 8999999999999864
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=276.54 Aligned_cols=304 Identities=15% Similarity=0.173 Sum_probs=200.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeeeecCCcc-cccCCCCCCCCC---CCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKLHLAKQF-CELPHMPFPSRT---PTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~ 77 (381)
+|||+||||||+|+++|..+++.|.+|+|||++ .+||.|.+ .+++...+...... ......++...+ .......
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 489999999999999999999999999999997 78887653 33332211000000 000001110000 0012233
Q ss_pred HHHHHHHH------------HHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 78 SFINYVDN------------YVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 78 ~~~~~~~~------------~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.++.++ .++++ +++++.+ ++..+ + .+.+.|...++ +...++||+||+|||+.|..|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~---~-~~~~~v~~~~g---~~~~~~~d~lviAtGs~p~~p~ 248 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFK---D-DQTLIVRLNDG---GERVVAFDRCLIATGASPAVPP 248 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEe---c-CCEEEEEeCCC---ceEEEEcCEEEEcCCCCCCCCC
Confidence 33332221 22222 4444332 23322 2 24555655443 2247999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||.+... .+++.+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ +++..+.++...+
T Consensus 249 i~g~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~~~~~~l------- 316 (561)
T PRK13748 249 IPGLKETP--YWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDPAIGEAV------- 316 (561)
T ss_pred CCCCCccc--eEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCHHHHHHH-------
Confidence 99876431 233332222 22357999999999999999999999999999999853 5555555444333
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEc-CCc
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFE-NGK 299 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~-~g~ 299 (381)
.+.+++.+|+++.+ ++++..+ .+.+. ++.
T Consensus 317 ----------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~ 350 (561)
T PRK13748 317 ----------------------------------------------TAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG 350 (561)
T ss_pred ----------------------------------------------HHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC
Confidence 33446677888876 7776532 33222 234
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++||+..+.. +..++ ++++|++.+| +.++|+.|||||+|||++.+. .|..+|+.+|.+|.+.
T Consensus 351 ~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 351 ELRADKLLVATGRAPNTRSLAL-DAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred eEEeCEEEEccCCCcCCCCcCc-hhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 6999999999999999965433 43666 7888999999 567789999999999987654 8899999999999753
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=274.29 Aligned_cols=300 Identities=19% Similarity=0.256 Sum_probs=198.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCe-eeecCCc---ccccCCCCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRM-KLHLAKQ---FCELPHMPFPSRTPTFVP 75 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (381)
|++|||+||||||+|+++|..|++.|.+|+|||+ ..+||.|.. .+++.. ....... ......+..... ....+
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~ 78 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKID 78 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccC
Confidence 7789999999999999999999999999999999 678887653 222211 1110000 000111110000 12334
Q ss_pred HHHHHHHHHHHHHHh------------CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 76 RISFINYVDNYVSQM------------GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
..++.++.++..+++ ++++.. .++ ...+ ... +.+ ++ ..+.||+||+|||+. .|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~---~~~~-~~~--v~v-~~-----~~~~~d~lIiATGs~--~p 143 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIK-GTA---RFVD-PNT--VEV-NG-----ERIEAKNIVIATGSR--VP 143 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEE-EEE---EEcc-CCE--EEE-Cc-----EEEEeCEEEEeCCCC--CC
Confidence 556666555544433 222211 111 1111 122 444 33 679999999999999 45
Q ss_pred CCCCCCCCCcc-eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCc
Q 035902 144 EVPGLGSFEGE-YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLP 222 (381)
Q Consensus 144 ~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~ 222 (381)
.+||.+...+. +++..+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|..+.++...+.
T Consensus 144 ~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~~---- 217 (460)
T PRK06292 144 PIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVSKQAQ---- 217 (460)
T ss_pred CCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHHHHHH----
Confidence 56665432222 333333222 23357999999999999999999999999999999988 677765554443333
Q ss_pred HHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC---eEEE--
Q 035902 223 CKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN---EVEF-- 295 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~---~v~~-- 295 (381)
+.+++. ++++.+ +.+++.+ .+.+
T Consensus 218 -------------------------------------------------~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~ 247 (460)
T PRK06292 218 -------------------------------------------------KILSKE-FKIKLGAKVTSVEKSGDEKVEELE 247 (460)
T ss_pred -------------------------------------------------HHHhhc-cEEEcCCEEEEEEEcCCceEEEEE
Confidence 333455 777766 7777543 3443
Q ss_pred cCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHH
Q 035902 296 ENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIA 369 (381)
Q Consensus 296 ~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a 369 (381)
.++ +++++|.+++++|.+|+.+.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+|
T Consensus 248 ~~~~~~~i~~D~vi~a~G~~p~~~~l~l-~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa 325 (460)
T PRK06292 248 KGGKTETIEADYVLVATGRRPNTDGLGL-ENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAA 325 (460)
T ss_pred cCCceEEEEeCEEEEccCCccCCCCCCc-HhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHHHHHHHHH
Confidence 233 57999999999999999975433 43666 7788999999 567789999999999987654 8999999999
Q ss_pred HHhhhc
Q 035902 370 NDINLA 375 (381)
Q Consensus 370 ~~i~~~ 375 (381)
.+|.+.
T Consensus 326 ~~i~~~ 331 (460)
T PRK06292 326 ENAAGD 331 (460)
T ss_pred HHhcCC
Confidence 999864
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=269.37 Aligned_cols=304 Identities=15% Similarity=0.212 Sum_probs=201.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCCee-eecCCccc--------ccCCCCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYDRMK-LHLAKQFC--------ELPHMPFPSRTPT 72 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~ 72 (381)
+|||+|||||++|+.||..+++.|.+|+|||++ .+|| +.+..+.+.-. ........ ++.. ....+++.
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~-~~~~d~~~ 125 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT-QFSFNLPL 125 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc-cCccCHHH
Confidence 589999999999999999999999999999997 4666 34444443222 21111110 1110 00111111
Q ss_pred CC-CHHHH----HHHHHHHHHHhCCccccccE-EEE---EEE-----------eCCCCeEEEE------EeecCCCceEE
Q 035902 73 FV-PRISF----INYVDNYVSQMGINPRYHRS-VES---ASY-----------DENAKAWIIV------AKNTALDAYEE 126 (381)
Q Consensus 73 ~~-~~~~~----~~~~~~~~~~~~~~~~~~~~-v~~---i~~-----------~~~~~~~~v~------~~~~~~~~~~~ 126 (381)
.. ..+++ .+.+++.+++.+++++.+.. ..+ +.. ..++...+|. ..++ ..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-----~~ 200 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG-----QV 200 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC-----cE
Confidence 11 12222 23334555666777655442 111 000 0001111121 1222 57
Q ss_pred EEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCccee
Q 035902 127 YVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVL 206 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~ 206 (381)
++||+||||||+.|..|+++|.+. ++++.++.... .+++++|||+|.+|+|+|..+++.|++|+++.+.+ +++
T Consensus 201 i~ad~lVIATGS~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~-~il 273 (561)
T PTZ00058 201 IEGKNILIAVGNKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN-RLL 273 (561)
T ss_pred EECCEEEEecCCCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc-ccc
Confidence 999999999999999999988642 34444443322 28999999999999999999999999999999998 677
Q ss_pred chhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--
Q 035902 207 TREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-- 284 (381)
Q Consensus 207 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 284 (381)
|..+.++...+ .+.+++.+|+++.+
T Consensus 274 ~~~d~~i~~~l-----------------------------------------------------~~~L~~~GV~i~~~~~ 300 (561)
T PTZ00058 274 RKFDETIINEL-----------------------------------------------------ENDMKKNNINIITHAN 300 (561)
T ss_pred ccCCHHHHHHH-----------------------------------------------------HHHHHHCCCEEEeCCE
Confidence 76665544443 33346678888877
Q ss_pred cceEeCC---eE--EEcCC-cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccc--
Q 035902 285 ITSINRN---EV--EFENG-KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRT-- 356 (381)
Q Consensus 285 v~~v~~~---~v--~~~~g-~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-- 356 (381)
+.+++++ ++ .+.++ +++++|.|++|+|++|++..+.. +..++.+++|++.+| +.++|+.|||||+|||++
T Consensus 301 V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l-~~~~~~~~~G~I~VD-e~lqTs~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 301 VEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL-KALNIKTPKGYIKVD-DNQRTSVKHIYAVGDCCMVK 378 (561)
T ss_pred EEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCc-cccceecCCCeEEEC-cCCccCCCCEEEeEeccCcc
Confidence 7777643 23 33343 57999999999999999875543 435555678999998 567899999999999988
Q ss_pred --------------------------------ccc---CccHHHHHHHHHhhhc
Q 035902 357 --------------------------------GLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 357 --------------------------------~~~---~a~~~a~~~a~~i~~~ 375 (381)
... .|..||+.+|++|.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 379 KNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 222 7899999999999864
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=267.33 Aligned_cols=304 Identities=18% Similarity=0.197 Sum_probs=199.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCeeeecCCcc-c---ccCCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMKLHLAKQF-C---ELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 77 (381)
++||+|||||++|+.+|..|++.|.+|+|||+...+||.|.+. +++...+...... . ..+.+......+. ....
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~-~~~~ 94 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS-IDRG 94 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc-cCHH
Confidence 4899999999999999999999999999999988899987643 3332211111000 0 0010000000011 1222
Q ss_pred HHHHHHHH------------HHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 78 SFINYVDN------------YVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 78 ~~~~~~~~------------~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+...... .++.. ++++..+. ..+.+ .+.+.|...++ +..++.||+||||||+.|..|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~----a~f~~-~~~v~v~~~~g---~~~~~~~d~lViATGs~p~~p~ 166 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGY----ARFKD-GNTLVVRLHDG---GERVLAADRCLIATGSTPTIPP 166 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE----EEEec-CCEEEEEeCCC---ceEEEEeCEEEEecCCCCCCCC
Confidence 22221111 11111 33332221 12222 25566665544 2257999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||.+... ..+..+.... ...+++++|||+|.+|+|+|..+.+.|.+|+++.|. .+++..+.++...+
T Consensus 167 i~G~~~~~--~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~~~~~~l------- 234 (479)
T PRK14727 167 IPGLMDTP--YWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDPLLGETL------- 234 (479)
T ss_pred CCCcCccc--eecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchHHHHHHH-------
Confidence 99875421 2333222222 224799999999999999999999999999999875 45565554433332
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--CeEEEc-CCc
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NEVEFE-NGK 299 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~v~~~-~g~ 299 (381)
.+.+++.+++++.+ ++++.. +.+.+. ++.
T Consensus 235 ----------------------------------------------~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g 268 (479)
T PRK14727 235 ----------------------------------------------TACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG 268 (479)
T ss_pred ----------------------------------------------HHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC
Confidence 33446677888876 666653 333322 234
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++||+..+.. +..++ ++++|++.+| +.++|+.|||||+|||++.+. .|..||+.+|.+|.+.
T Consensus 269 ~i~aD~VlvA~G~~pn~~~l~l-~~~g~~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 269 ELRAEKLLISTGRHANTHDLNL-EAVGVTTDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred eEEeCEEEEccCCCCCccCCCc-hhhCceecCCCCEEEC-CCeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 6899999999999999965433 43566 7788999999 567889999999999997654 8889999999999864
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=268.18 Aligned_cols=292 Identities=16% Similarity=0.141 Sum_probs=204.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
|++++|||||||+||+.+|..|.+.+.+|+|||+++..- |..+ .+..........++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~ 65 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSIC 65 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhH
Confidence 345899999999999999999987778999999987321 0000 000011122234455
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecC---CCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA---LDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
..++..++.+++++ ...+|++|+.++ +.+.+...+.. ..+..++.||+||+|||+.+..+.+||..+. .+.
T Consensus 66 ~~~~~~~~~~~~~~-i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~---~~~ 139 (424)
T PTZ00318 66 EPVRPALAKLPNRY-LRAVVYDVDFEE--KRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEER---AFF 139 (424)
T ss_pred HHHHHHhccCCeEE-EEEEEEEEEcCC--CEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHc---CCC
Confidence 55566666667654 557899998865 55333211000 0112579999999999999998889987542 111
Q ss_pred cCCCCC----------------CC------CCCCCeEEEEcCCCCHHHHHHHHhh--------------CCCeeEEEEec
Q 035902 158 SSKYEN----------------GG------KFIGKNVLVVGCGNSGMEIAYDLSS--------------CGACTSIVVRG 201 (381)
Q Consensus 158 ~~~~~~----------------~~------~~~~~~v~viG~G~~~~e~a~~l~~--------------~g~~v~~i~r~ 201 (381)
.+...+ .. ....++++|||+|.+|+|+|..|++ .+.+|+++++.
T Consensus 140 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 219 (424)
T PTZ00318 140 LKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG 219 (424)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC
Confidence 111100 00 0123589999999999999999986 36789999998
Q ss_pred CcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEE
Q 035902 202 PVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQV 281 (381)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 281 (381)
+ .++|..+......+ .+.+++.+|++
T Consensus 220 ~-~ll~~~~~~~~~~~-----------------------------------------------------~~~L~~~gV~v 245 (424)
T PTZ00318 220 S-EVLGSFDQALRKYG-----------------------------------------------------QRRLRRLGVDI 245 (424)
T ss_pred C-cccccCCHHHHHHH-----------------------------------------------------HHHHHHCCCEE
Confidence 8 56665443333222 45557789999
Q ss_pred ccC--cceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCC-CCCCcEEEEeccccc
Q 035902 282 FPS--ITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHW-KGENGLYCAGFSRTG 357 (381)
Q Consensus 282 ~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~-~~~~~ifa~Gd~~~~ 357 (381)
+.+ |++++++.+.+++|+++++|.+|+++|.+|+. +.. . .++ ++++|++.+| +.++ ++.|||||+|||+..
T Consensus 246 ~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~--~~~-~-~~l~~~~~G~I~Vd-~~l~~~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 246 RTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGP--LTK-Q-LKVDKTSRGRISVD-DHLRVKPIPNVFALGDCAAN 320 (424)
T ss_pred EeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcc--hhh-h-cCCcccCCCcEEeC-CCcccCCCCCEEEEeccccC
Confidence 977 99999999999999999999999999999984 333 3 454 6778999999 3444 689999999999863
Q ss_pred -----cc---CccHHHHHHHHHhhhccccC
Q 035902 358 -----LH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 358 -----~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
+. .|+.||..+|+||.+.+...
T Consensus 321 ~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 321 EERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 21 78999999999999988653
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=274.06 Aligned_cols=299 Identities=15% Similarity=0.192 Sum_probs=200.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC---------CCCCC-CcCCCCCCCee-eecCCcc--------cccCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE---------DCSAS-LWKKRAYDRMK-LHLAKQF--------CELPH 63 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~---------~~~g~-~~~~~~~~~~~-~~~~~~~--------~~~~~ 63 (381)
+|||+||||||+|+.+|..+++.|.+|+|||+. ..+|| +.+..+.+.-. ....... +++..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 489999999999999999999999999999961 34555 33433333211 1110000 01100
Q ss_pred C-CCCCCCCCCCC-HH----HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 64 M-PFPSRTPTFVP-RI----SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 64 ~-~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
. ....+|..... .+ .+.+++.+.+++.+++++.+ ++..++. .. |.+ ++ +.+.||+||||||
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~----~~--V~v-~G-----~~~~~D~LVIATG 225 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP----HT--VDV-DG-----KLYTARNILIAVG 225 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC----CE--EEE-CC-----EEEECCEEEEeCC
Confidence 0 00112222111 11 23345555566667776543 2333322 22 444 33 5799999999999
Q ss_pred CCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 138 ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
+.|..|++||.+. +.+....... ...+++++|||+|.+|+|+|..++..+.+|+++.|.+ .+++..+.++...+
T Consensus 226 s~p~~P~IpG~~~----v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il~~~d~~~~~~l 299 (558)
T PLN02546 226 GRPFIPDIPGIEH----AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVLRGFDEEVRDFV 299 (558)
T ss_pred CCCCCCCCCChhh----ccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccccccCHHHHHHH
Confidence 9999999998753 2222222222 2357999999999999999999999999999999988 66666554444333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC---Ce
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR---NE 292 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~---~~ 292 (381)
.+.+++.+|+++.+ +.++.. +.
T Consensus 300 -----------------------------------------------------~~~L~~~GV~i~~~~~v~~i~~~~~g~ 326 (558)
T PLN02546 300 -----------------------------------------------------AEQMSLRGIEFHTEESPQAIIKSADGS 326 (558)
T ss_pred -----------------------------------------------------HHHHHHCCcEEEeCCEEEEEEEcCCCE
Confidence 33446678888877 667653 22
Q ss_pred E--EEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHH
Q 035902 293 V--EFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAK 366 (381)
Q Consensus 293 v--~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~ 366 (381)
+ .+.+++...+|.+++++|++|+...+.. +..++ ++++|++.+| +.++|+.|||||+|||.+... .|..||+
T Consensus 327 v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~l-e~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~ 404 (558)
T PLN02546 327 LSLKTNKGTVEGFSHVMFATGRKPNTKNLGL-EEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINLTPVALMEGG 404 (558)
T ss_pred EEEEECCeEEEecCEEEEeeccccCCCcCCh-hhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCCcccHHHHHHHHH
Confidence 3 3344544569999999999999965432 33666 7788999999 567789999999999987654 8889999
Q ss_pred HHHHHhhhc
Q 035902 367 NIANDINLA 375 (381)
Q Consensus 367 ~~a~~i~~~ 375 (381)
.+|++|.+.
T Consensus 405 ~~a~~i~g~ 413 (558)
T PLN02546 405 ALAKTLFGN 413 (558)
T ss_pred HHHHHHcCC
Confidence 999999863
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=262.50 Aligned_cols=308 Identities=15% Similarity=0.153 Sum_probs=206.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCee-eecCCcc--------cccCCC---CCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRMK-LHLAKQF--------CELPHM---PFPSRT 70 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~-~~~~~~~--------~~~~~~---~~~~~~ 70 (381)
++|+|||||++|+.+|..++++|.+|+|||++. +||.. +..+.+.-. ....... +++... ....++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 589999999999999999999999999999875 66633 333332211 1110000 000000 000011
Q ss_pred CCCCC-HHH----HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 71 PTFVP-RIS----FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 71 ~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
+.... ... +.+.+++.+++++++++.+. +..++...+.....|...++ +.+.+.||+||+|||+.|..|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g---~~~~~~~d~lViATGs~p~~~p~ 156 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADG---GEETLDADVVLIATGASPRILPT 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCC---ceEEEecCEEEEcCCCCCCCCCC
Confidence 11100 111 12344555666788875543 43333111124555555443 22479999999999999886654
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
++... ..+++..+..+.. ..+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.+....+
T Consensus 157 ~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~l-------- 224 (466)
T PRK07845 157 AEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDADAAEVL-------- 224 (466)
T ss_pred CCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHHHHHHH--------
Confidence 43321 1244544443332 347899999999999999999999999999999988 67776655544333
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEcCCc
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFENGK 299 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~~g~ 299 (381)
.+.+++.+|+++.+ +++++. ++ +.+.+|+
T Consensus 225 ---------------------------------------------~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~ 259 (466)
T PRK07845 225 ---------------------------------------------EEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR 259 (466)
T ss_pred ---------------------------------------------HHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc
Confidence 33446678888877 777752 33 4556888
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++++|++|+...+.. ++.++ ++++|++.+| +.++|+.|||||+||+++.+. .|..||..++++|.+.
T Consensus 260 ~l~~D~vl~a~G~~pn~~~l~l-~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 260 TVEGSHALMAVGSVPNTAGLGL-EEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred EEEecEEEEeecCCcCCCCCCc-hhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 9999999999999999975433 43666 7788999998 567789999999999997654 8999999999999863
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=267.08 Aligned_cols=297 Identities=15% Similarity=0.142 Sum_probs=195.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCC-eeeecCCcccccCC---CCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYDR-MKLHLAKQFCELPH---MPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (381)
+||++||||||+|..+|.. ..|.+|+|||+.. +|| +.+..+.+. +.......+..... +-.... ..-....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence 4899999999999998876 4699999999864 555 444444332 21111111110000 000000 0011222
Q ss_pred HHHHHHHHH-------------HHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 78 SFINYVDNY-------------VSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 78 ~~~~~~~~~-------------~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.++.+.. +++.+++++.+. ...+ + .+. |.+.++ +.++||+||+|||+.|..|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~--~~~--V~v~~g-----~~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--G--PKT--LRTGDG-----EEITADQVVIAAGSRPVIPP 144 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--c--CCE--EEECCC-----CEEEeCEEEEcCCCCCCCCC
Confidence 333322222 233455544332 1111 1 233 666554 47999999999999999999
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
++|.+.. .+.++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+.+
T Consensus 145 i~g~~~~--~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~l~~----- 215 (451)
T PRK07846 145 VIADSGV--RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERFTE----- 215 (451)
T ss_pred CCCcCCc--cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHHHHHHHH-----
Confidence 9886532 1233333322 22357999999999999999999999999999999998 6666555443322211
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENG 298 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g 298 (381)
+.+.+++++.+ +++++.+ + +.+.+|
T Consensus 216 -------------------------------------------------l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g 246 (451)
T PRK07846 216 -------------------------------------------------LASKRWDVRLGRNVVGVSQDGSGVTLRLDDG 246 (451)
T ss_pred -------------------------------------------------HHhcCeEEEeCCEEEEEEEcCCEEEEEECCC
Confidence 12235777766 7777543 3 456678
Q ss_pred cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 299 KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 299 ~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
+++++|.+++|+|++|+++.+.. +..++ ++++|++.+| +.++|+.|||||+|||++... .|..||+.+++||.+
T Consensus 247 ~~i~~D~vl~a~G~~pn~~~l~~-~~~gl~~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 247 STVEADVLLVATGRVPNGDLLDA-AAAGVDVDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred cEeecCEEEEEECCccCccccCc-hhcCceECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcC
Confidence 89999999999999999965433 44666 7788999999 567799999999999997644 889999999999985
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 325 ~ 325 (451)
T PRK07846 325 P 325 (451)
T ss_pred C
Confidence 4
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=280.60 Aligned_cols=284 Identities=20% Similarity=0.198 Sum_probs=208.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPR 76 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (381)
|+.++|+|||+|+||+.+|..|+++ +.+|+||++++.++ |..+.+.. .+.. ...
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~--------------~~~~-~~~ 58 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSS--------------YFSH-HTA 58 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchH--------------hHcC-CCH
Confidence 6667999999999999999999865 46999999998653 22111110 0011 112
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCccee
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYM 156 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~ 156 (381)
+++.....+++++.+++++.++.|++++... . .|.+.++ ..+.||+||+|||+.|..|++||.+.. + ++
T Consensus 59 ~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~--~V~~~~G-----~~i~yD~LVIATGs~p~~p~ipG~~~~-~-v~ 127 (847)
T PRK14989 59 EELSLVREGFYEKHGIKVLVGERAITINRQE--K--VIHSSAG-----RTVFYDKLIMATGSYPWIPPIKGSETQ-D-CF 127 (847)
T ss_pred HHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--c--EEEECCC-----cEEECCEEEECCCCCcCCCCCCCCCCC-C-eE
Confidence 2333333455667799999999999998754 3 3676665 679999999999999999999997642 1 22
Q ss_pred ecCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHH
Q 035902 157 HSSKYENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIV 230 (381)
Q Consensus 157 ~~~~~~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~ 230 (381)
......+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ ++++. .+.+....+
T Consensus 128 ~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld~~~~~~l------------- 193 (847)
T PRK14989 128 VYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLDQMGGEQL------------- 193 (847)
T ss_pred EECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcCHHHHHHH-------------
Confidence 222221111 1257899999999999999999999999999999988 55553 233322222
Q ss_pred HHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC------eEEEcCCcEee
Q 035902 231 VMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN------EVEFENGKIEE 302 (381)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~------~v~~~~g~~~~ 302 (381)
.+.+++.+|+++.+ ++++..+ .+.+.+|++++
T Consensus 194 ----------------------------------------~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~ 233 (847)
T PRK14989 194 ----------------------------------------RRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELE 233 (847)
T ss_pred ----------------------------------------HHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEE
Confidence 44456778888887 7777532 46788999999
Q ss_pred ccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc-------CccHHHHHHHHHhhh
Q 035902 303 FEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH-------GISIDAKNIANDINL 374 (381)
Q Consensus 303 ~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~-------~a~~~a~~~a~~i~~ 374 (381)
+|.||+|+|++|+.. ++. . .++ ++++|++.|| +.++|+.|||||+|||+.... .|..||+.+|++|.+
T Consensus 234 ~D~Vv~A~G~rPn~~-L~~-~-~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 234 VDFIVFSTGIRPQDK-LAT-Q-CGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred cCEEEECCCcccCch-HHh-h-cCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcC
Confidence 999999999999986 333 3 666 7888999999 577889999999999986421 678899999999987
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 310 ~ 310 (847)
T PRK14989 310 S 310 (847)
T ss_pred C
Confidence 4
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=268.30 Aligned_cols=306 Identities=16% Similarity=0.199 Sum_probs=200.0
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--------CCCCC-cCCCCCCCeeeecCCcc-ccc----CCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILERED--------CSASL-WKKRAYDRMKLHLAKQF-CEL----PHMP 65 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--------~~g~~-~~~~~~~~~~~~~~~~~-~~~----~~~~ 65 (381)
|+ .|||+||||||||+.||..++++|.+|+|||+.. .+||+ .+..+++.-.+...... ... ..+.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 44 4899999999999999999999999999999631 36773 44444442111000000 000 0011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEE-------EeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 66 FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESAS-------YDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-------~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
. ..+...+..++.++++...+.++..+....++..++ ..+ ... |.+.+. ++...++||+||||||+
T Consensus 82 ~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~-~~~--v~v~~~--~~~~~i~~d~lIIATGs 154 (499)
T PTZ00052 82 W--KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD-EHT--VSYGDN--SQEETITAKYILIATGG 154 (499)
T ss_pred C--CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc-CCE--EEEeeC--CCceEEECCEEEEecCC
Confidence 0 001123455666666666655544333222221111 111 123 544331 12257999999999999
Q ss_pred CCCCCC-CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 139 NGLIPE-VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 139 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
.|..|. +||.+.. ...+.+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.+. .+++..+.++...+
T Consensus 155 ~p~~p~~i~G~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~~~~~~l 228 (499)
T PTZ00052 155 RPSIPEDVPGAKEY---SITSDDIFSL-SKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDRQCSEKV 228 (499)
T ss_pred CCCCCCCCCCccce---eecHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCCHHHHHHH
Confidence 998874 8886532 2333333222 224789999999999999999999999999999874 34565555444333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N-- 291 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~-- 291 (381)
.+.+++.+|+++.+ +.++.. +
T Consensus 229 -----------------------------------------------------~~~l~~~GV~i~~~~~v~~v~~~~~~~ 255 (499)
T PTZ00052 229 -----------------------------------------------------VEYMKEQGTLFLEGVVPINIEKMDDKI 255 (499)
T ss_pred -----------------------------------------------------HHHHHHcCCEEEcCCeEEEEEEcCCeE
Confidence 33445667888877 556653 2
Q ss_pred eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc-cc---CccHHHH
Q 035902 292 EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-LH---GISIDAK 366 (381)
Q Consensus 292 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-~~---~a~~~a~ 366 (381)
.+.+.+|+++++|.|++++|++||++.+.. +..++ ++++|++.++. . +|+.|+|||+|||+.. +. .|..||+
T Consensus 256 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l-~~~g~~~~~~G~ii~~~-~-~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~ 332 (499)
T PTZ00052 256 KVLFSDGTTELFDTVLYATGRKPDIKGLNL-NAIGVHVNKSNKIIAPN-D-CTNIPNIFAVGDVVEGRPELTPVAIKAGI 332 (499)
T ss_pred EEEECCCCEEEcCEEEEeeCCCCCccccCc-hhcCcEECCCCCEeeCC-C-cCCCCCEEEEEEecCCCcccHHHHHHHHH
Confidence 356678888999999999999999965432 33666 77888866652 3 8899999999999853 32 8899999
Q ss_pred HHHHHhhhc
Q 035902 367 NIANDINLA 375 (381)
Q Consensus 367 ~~a~~i~~~ 375 (381)
.+|++|.+.
T Consensus 333 ~aa~ni~g~ 341 (499)
T PTZ00052 333 LLARRLFKQ 341 (499)
T ss_pred HHHHHHhCC
Confidence 999999763
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=265.72 Aligned_cols=310 Identities=18% Similarity=0.188 Sum_probs=203.8
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCee-eecCCccc--------ccCCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMK-LHLAKQFC--------ELPHMPFPSR 69 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~-~~~~~~~~--------~~~~~~~~~~ 69 (381)
|+ +|||+||||||||+++|..|++.|.+|+|||+. .+||++.. .+.+.-. ......+. +........+
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 65 699999999999999999999999999999996 67886543 3333211 11110000 1110000011
Q ss_pred CCCCC-CHHHHHHHH----HHHHHHhCCccccccEEEEEEEe---CCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 70 TPTFV-PRISFINYV----DNYVSQMGINPRYHRSVESASYD---ENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 70 ~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++... ..+++.+.+ .+.+++.+++++.+ ++..++.. ...+.+.|.+.++ +...+.||+||+|||+.|.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g---~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETG---ENEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCC---ceEEEEcCEEEEeCCCCCC
Confidence 11111 112222222 34455667776654 35455432 1123555665443 2257999999999999986
Q ss_pred CCCCCCCCCCCcc-eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhh
Q 035902 142 IPEVPGLGSFEGE-YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKF 220 (381)
Q Consensus 142 ~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~ 220 (381)
.+ |+.+ ..+. +++..+.... ...+++++|||+|++|+|+|..|++.|.+|+++.|.+ .++|..+.++...+
T Consensus 156 ~~--p~~~-~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~~~~~~l--- 227 (472)
T PRK05976 156 EL--PGLP-FDGEYVISSDEALSL-ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDAELSKEV--- 227 (472)
T ss_pred CC--CCCC-CCCceEEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCHHHHHHH---
Confidence 54 3332 1222 3443333332 2347999999999999999999999999999999998 67776655444333
Q ss_pred CcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe---CCeE--
Q 035902 221 LPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN---RNEV-- 293 (381)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~---~~~v-- 293 (381)
.+.+++.+|+++.+ +++++ .+++
T Consensus 228 --------------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~ 257 (472)
T PRK05976 228 --------------------------------------------------ARLLKKLGVRVVTGAKVLGLTLKKDGGVLI 257 (472)
T ss_pred --------------------------------------------------HHHHHhcCCEEEeCcEEEEEEEecCCCEEE
Confidence 33446678888877 77775 3333
Q ss_pred -EEcCC--cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 294 -EFENG--KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 294 -~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
.+.+| +++++|.+++|+|.+|+++.+.. +..++...+|++.++ +.++++.||||++||+.+.+. .|..+|..
T Consensus 258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l-~~~~~~~~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~ 335 (472)
T PRK05976 258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGL-ENTDIDVEGGFIQID-DFCQTKERHIYAIGDVIGEPQLAHVAMAEGEM 335 (472)
T ss_pred EEEeCCceEEEEeCEEEEeeCCccCCCCCCc-hhcCceecCCEEEEC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHH
Confidence 23456 36899999999999999865433 334553457889988 566788999999999987643 89999999
Q ss_pred HHHHhhhc
Q 035902 368 IANDINLA 375 (381)
Q Consensus 368 ~a~~i~~~ 375 (381)
+|++|.+.
T Consensus 336 aa~~i~g~ 343 (472)
T PRK05976 336 AAEHIAGK 343 (472)
T ss_pred HHHHHcCC
Confidence 99999763
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=263.39 Aligned_cols=287 Identities=17% Similarity=0.200 Sum_probs=198.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+|+|||||+||+++|..|++.+ .+|+|||+++..+ |... ..+.+. ...+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~----~~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV----GGFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe----ccccCCHHHhhcC
Confidence 6999999999999999999875 4899999987543 1100 000000 0011222344444
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
..+.+++++++++++++|.+++.++ +. +.+.+...+....+.||+||+|||+.|..|+++|.+.. .+++.....
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~--~v~~~~~~~ 135 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KT--ITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLE--NVYTLKSME 135 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CE--EEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCC--CEEEECCHH
Confidence 4555667799988899999998765 44 44443111122234499999999999999988887531 234333221
Q ss_pred CC-------CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHHh
Q 035902 163 NG-------GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVMLS 234 (381)
Q Consensus 163 ~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (381)
+. ....+++++|+|+|.+|+|+|..+.+.|.+|+++.+.+ .+++. .+.++...
T Consensus 136 ~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~------------------ 196 (444)
T PRK09564 136 DGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFDKEITDV------------------ 196 (444)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcCHHHHHH------------------
Confidence 11 12247899999999999999999999999999999887 55442 22222222
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe---EEEcCCcEeeccEEEEe
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE---VEFENGKIEEFEAIIFA 309 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~---v~~~~g~~~~~D~vi~a 309 (381)
+.+.+++.+++++.+ +.+++++. ....++.++++|.+++|
T Consensus 197 -----------------------------------l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a 241 (444)
T PRK09564 197 -----------------------------------MEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVA 241 (444)
T ss_pred -----------------------------------HHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEEC
Confidence 134446667888776 77776442 12234557999999999
Q ss_pred cCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhhc
Q 035902 310 TGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINLA 375 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~~ 375 (381)
+|++|+.+. +. . .++ ++++|++.+| +.++++.|||||+|||+..+ ..|..||+.+|+||.+.
T Consensus 242 ~G~~p~~~~-l~-~-~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~ 317 (444)
T PRK09564 242 TGVKPNTEF-LE-D-TGLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGR 317 (444)
T ss_pred cCCCcCHHH-HH-h-cCccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCC
Confidence 999999854 44 3 666 6778999999 56678999999999998631 27889999999999874
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=255.82 Aligned_cols=281 Identities=16% Similarity=0.240 Sum_probs=199.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+ ++|+|||||+||+.+|..|++.+ .+|+||++++... |... .+ +..+.......+
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~------------~l--~~~~~~~~~~~~ 58 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKP------------DL--SHVFSQGQRADD 58 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcC------------cC--cHHHhCCCCHHH
Confidence 63 68999999999999999998864 5899999987322 1000 00 001111222334
Q ss_pred HHH-HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 79 FIN-YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
+.. ...+++++++++++.+++|++++.+. .. +.++ + ..+.||+||+|||+.|..|+++|.+. +++
T Consensus 59 ~~~~~~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~-~-----~~~~yd~LVlATG~~~~~p~i~G~~~----v~~ 124 (377)
T PRK04965 59 LTRQSAGEFAEQFNLRLFPHTWVTDIDAEA--QV--VKSQ-G-----NQWQYDKLVLATGASAFVPPIPGREL----MLT 124 (377)
T ss_pred hhcCCHHHHHHhCCCEEECCCEEEEEECCC--CE--EEEC-C-----eEEeCCEEEECCCCCCCCCCCCCCce----EEE
Confidence 443 24566677899999999999998754 33 5543 3 57999999999999999999998653 233
Q ss_pred cCCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHHHHHHH
Q 035902 158 SSKYEN-----GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLVDFIVV 231 (381)
Q Consensus 158 ~~~~~~-----~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~~~ 231 (381)
.....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++.. +.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~~~~~~~~---------------- 187 (377)
T PRK04965 125 LNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASLMPPEVSS---------------- 187 (377)
T ss_pred ECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchhCCHHHHH----------------
Confidence 222111 111257899999999999999999999999999999988 554432 111111
Q ss_pred HHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccE
Q 035902 232 MLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEA 305 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~ 305 (381)
.+.+.+++.+++++.+ +++++.+ .+.+.+|+++++|.
T Consensus 188 -------------------------------------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~ 230 (377)
T PRK04965 188 -------------------------------------RLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDA 230 (377)
T ss_pred -------------------------------------HHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCE
Confidence 1244456677888766 7777654 36678899999999
Q ss_pred EEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-------cCccHHHHHHHHHhhhcc
Q 035902 306 IIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------HGISIDAKNIANDINLAL 376 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------~~a~~~a~~~a~~i~~~l 376 (381)
+|+|+|.+|++. +.. . .++-...| +.+| +.++++.|||||+|||+... ..|..||+.+|+||.+.-
T Consensus 231 vI~a~G~~p~~~-l~~-~-~gl~~~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 231 VIAAAGLRPNTA-LAR-R-AGLAVNRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred EEECcCCCcchH-HHH-H-CCCCcCCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 999999999985 333 2 55533356 7787 56778899999999997532 268899999999998754
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=263.72 Aligned_cols=310 Identities=15% Similarity=0.176 Sum_probs=202.7
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEec------CCCCCCCcCC-CCCCC-eeeecCCccc---------ccC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILER------EDCSASLWKK-RAYDR-MKLHLAKQFC---------ELP 62 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~------~~~~g~~~~~-~~~~~-~~~~~~~~~~---------~~~ 62 (381)
|+ +||++||||||||++||..+++.|.+|+|||+ ...+||.+.+ .+++. ........+. +..
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 53 58999999999999999999999999999998 3567776543 22222 1111100000 111
Q ss_pred CCCCCCCCCCCCC-HHHHH----HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 63 HMPFPSRTPTFVP-RISFI----NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 63 ~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
....+.+++.... .+++. ..++++.+..+++++.+ ++..++... ..+.|.+..+ +...++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~--~~~~v~v~~~---~~~~~~~d~lViATG 154 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTD--AGYEIKVTGE---DETVITAKHVIIATG 154 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCC--CCCEEEEecC---CCeEEEeCEEEEeCC
Confidence 0000111111111 12222 23344455557665543 344444333 3455666432 115799999999999
Q ss_pred CCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 138 ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
+.|..++ +.+ +.+..++.++........+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 155 s~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~ 230 (475)
T PRK06327 155 SEPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFLAAADEQVAKEA 230 (475)
T ss_pred CCCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccCCcCCHHHHHHH
Confidence 9986543 322 1222233333222223357999999999999999999999999999999988 66665544433333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e-
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E- 292 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~- 292 (381)
.+.+++.+++++.+ |++++.+ .
T Consensus 231 -----------------------------------------------------~~~l~~~gi~i~~~~~v~~i~~~~~~v 257 (475)
T PRK06327 231 -----------------------------------------------------AKAFTKQGLDIHLGVKIGEIKTGGKGV 257 (475)
T ss_pred -----------------------------------------------------HHHHHHcCcEEEeCcEEEEEEEcCCEE
Confidence 33345567888876 7777643 3
Q ss_pred -EEEcC--C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccH
Q 035902 293 -VEFEN--G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISI 363 (381)
Q Consensus 293 -v~~~~--g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~ 363 (381)
+.+.+ | +++++|.+++++|++|+.+.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..
T Consensus 258 ~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~-~~~g~~~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~~~~~A~~ 335 (475)
T PRK06327 258 SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGL-EAVGLKLDERGFIPVD-DHCRTNVPNVYAIGDVVRGPMLAHKAEE 335 (475)
T ss_pred EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCc-HhhCceeCCCCeEeEC-CCCccCCCCEEEEEeccCCcchHHHHHH
Confidence 34444 3 47999999999999999875444 44566 7788999998 456789999999999987654 8999
Q ss_pred HHHHHHHHhhhc
Q 035902 364 DAKNIANDINLA 375 (381)
Q Consensus 364 ~a~~~a~~i~~~ 375 (381)
||..+|++|.+.
T Consensus 336 ~G~~aa~~i~g~ 347 (475)
T PRK06327 336 EGVAVAERIAGQ 347 (475)
T ss_pred HHHHHHHHHcCC
Confidence 999999999864
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=260.83 Aligned_cols=304 Identities=14% Similarity=0.148 Sum_probs=197.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--------CCCCCc-CCCCCCCeeeecCCc---------ccccCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED--------CSASLW-KKRAYDRMKLHLAKQ---------FCELPHM 64 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--------~~g~~~-~~~~~~~~~~~~~~~---------~~~~~~~ 64 (381)
+||++||||||+|+.+|..+++.|.+|++||+.. .+||.+ +..+++.-.+..... .+++...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 467743 334444222111100 0111000
Q ss_pred C-CCCCCCCCCC-HHHHH----HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 65 P-FPSRTPTFVP-RISFI----NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 65 ~-~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
. ...+++.... ..++. +.....++..+++++.+. .. +.+ .+...|...++ +...++||+||+|||+
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a~---f~~-~~~v~v~~~~g---~~~~~~~d~lVIATGs 153 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-AE---FVD-KHRIKATNKKG---KEKIYSAERFLIATGE 153 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EE---EcC-CCEEEEeccCC---CceEEEeCEEEEecCC
Confidence 0 0011111111 11121 122233444566654322 21 112 13322322222 2357999999999999
Q ss_pred CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHH
Q 035902 139 NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLL 218 (381)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~ 218 (381)
.|..|++||.+.. .+++.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.| + .++|..+.++...+.
T Consensus 154 ~p~~p~ipG~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~-~~l~~~d~~~~~~l~ 227 (484)
T TIGR01438 154 RPRYPGIPGAKEL---CITSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S-ILLRGFDQDCANKVG 227 (484)
T ss_pred CCCCCCCCCccce---eecHHHhhccc-ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c-ccccccCHHHHHHHH
Confidence 9999999987542 23333333322 2568999999999999999999999999999997 4 566766665554443
Q ss_pred hhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--e
Q 035902 219 KFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N--E 292 (381)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~--~ 292 (381)
+ .+++.+|+++.+ +.++.. + .
T Consensus 228 ~-----------------------------------------------------~L~~~gV~i~~~~~v~~v~~~~~~~~ 254 (484)
T TIGR01438 228 E-----------------------------------------------------HMEEHGVKFKRQFVPIKVEQIEAKVK 254 (484)
T ss_pred H-----------------------------------------------------HHHHcCCEEEeCceEEEEEEcCCeEE
Confidence 3 345667888877 556553 2 2
Q ss_pred EEEcCC---cEeeccEEEEecCCCCCcchhccccCCcc-ccc-CCCCCCCCCCCCCCCCcEEEEeccccc-cc---CccH
Q 035902 293 VEFENG---KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDE-YGMPKRNCPNHWKGENGLYCAGFSRTG-LH---GISI 363 (381)
Q Consensus 293 v~~~~g---~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~ifa~Gd~~~~-~~---~a~~ 363 (381)
+.+.++ +++++|.+++|+|++||+..+.. +..++ ++. +|++.+| +.++|+.|+|||+|||+.. .. .|..
T Consensus 255 v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l-~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~ 332 (484)
T TIGR01438 255 VTFTDSTNGIEEEYDTVLLAIGRDACTRKLNL-ENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDILEDKQELTPVAIQ 332 (484)
T ss_pred EEEecCCcceEEEeCEEEEEecCCcCCCcCCc-ccccceecCcCCeEecC-CCcccCCCCEEEEEEecCCCccchHHHHH
Confidence 455555 37999999999999999975433 44666 554 5889998 5677899999999999853 22 8899
Q ss_pred HHHHHHHHhhhc
Q 035902 364 DAKNIANDINLA 375 (381)
Q Consensus 364 ~a~~~a~~i~~~ 375 (381)
||+.+|++|.+.
T Consensus 333 ~g~~aa~~i~~~ 344 (484)
T TIGR01438 333 AGRLLAQRLFSG 344 (484)
T ss_pred HHHHHHHHHhcC
Confidence 999999999863
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=257.36 Aligned_cols=285 Identities=14% Similarity=0.176 Sum_probs=195.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+.++|+|||||+||++||..|++.+. +|+||+++...+ |.... .+..+...... . ......
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~--l~~~~~~~~~~----~-~~~~~~-- 64 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPP--LSKSMLLEDSP----Q-LQQVLP-- 64 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCC--CCHHHHCCCCc----c-ccccCC--
Confidence 777899999999999999999999876 899999987543 11000 00000000000 0 000000
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
.+...+.+++++.++.|..++.+. .. |.+.++ ..+.||+||+|||+.|..+++++... ..++..
T Consensus 65 -----~~~~~~~~i~~~~g~~V~~id~~~--~~--v~~~~g-----~~~~yd~LViATGs~~~~~p~~~~~~--~~v~~~ 128 (396)
T PRK09754 65 -----ANWWQENNVHLHSGVTIKTLGRDT--RE--LVLTNG-----ESWHWDQLFIATGAAARPLPLLDALG--ERCFTL 128 (396)
T ss_pred -----HHHHHHCCCEEEcCCEEEEEECCC--CE--EEECCC-----CEEEcCEEEEccCCCCCCCCCCCcCC--CCEEec
Confidence 122345689999999999998754 33 666665 57999999999999987766654321 123332
Q ss_pred CCCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHHHHHHHH
Q 035902 159 SKYENG-----GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 159 ~~~~~~-----~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
....+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++++. .......
T Consensus 129 ~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~---------------- 191 (396)
T PRK09754 129 RHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNAPPPVQRY---------------- 191 (396)
T ss_pred CCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhcCHHHHHH----------------
Confidence 211111 11247899999999999999999999999999999988 554432 1111111
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC---eEEEcCCcEeeccEEE
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN---EVEFENGKIEEFEAII 307 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~---~v~~~~g~~~~~D~vi 307 (381)
+.+.+++.+|+++.+ +++++.+ .+.+.+|+++++|.+|
T Consensus 192 -------------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv 234 (396)
T PRK09754 192 -------------------------------------LLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVI 234 (396)
T ss_pred -------------------------------------HHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEE
Confidence 234446678888876 7777643 3567889999999999
Q ss_pred EecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc------------cCccHHHHHHHHHhhhc
Q 035902 308 FATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL------------HGISIDAKNIANDINLA 375 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~------------~~a~~~a~~~a~~i~~~ 375 (381)
+++|.+|+.. ++. . .++-. ++.+.+| +.++++.|||||+|||+... ..|..||+.+|+||.+.
T Consensus 235 ~a~G~~pn~~-l~~-~-~gl~~-~~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~ 309 (396)
T PRK09754 235 YGIGISANDQ-LAR-E-ANLDT-ANGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGL 309 (396)
T ss_pred ECCCCChhhH-HHH-h-cCCCc-CCCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCC
Confidence 9999999975 443 3 55522 3558888 56778999999999997421 26899999999999875
Q ss_pred c
Q 035902 376 L 376 (381)
Q Consensus 376 l 376 (381)
.
T Consensus 310 ~ 310 (396)
T PRK09754 310 P 310 (396)
T ss_pred C
Confidence 4
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=260.25 Aligned_cols=302 Identities=17% Similarity=0.200 Sum_probs=198.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeeeecCCccc----ccCCCCCCCCCCCCCCHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKLHLAKQFC----ELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 78 (381)
|||+||||||+|+++|..|++.|.+|+|||+ +.+||.|.+ .+++...+......+ ....+..... ....+...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHHH
Confidence 8999999999999999999999999999999 778886543 233321111000000 0000100000 00112222
Q ss_pred HHH-----------HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC-
Q 035902 79 FIN-----------YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP- 146 (381)
Q Consensus 79 ~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~- 146 (381)
+.+ .+....++.+++++.+. +..+ + .+.+.+...++ ...++||+||+|||+.|..|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~--~~~~~v~~~~g----~~~~~~d~lVlAtG~~p~~~~~~~ 150 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFL--D--PGTVLVTGENG----EETLTAKNIIIATGSRPRSLPGPF 150 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--c--CCEEEEecCCC----cEEEEeCEEEEcCCCCCCCCCCCC
Confidence 222 22334445566655433 2222 2 24444554332 15799999999999999887765
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 147 GLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
+... ..+.+..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 151 ~~~~--~~~~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~--------- 217 (461)
T TIGR01350 151 DFDG--EVVITSTGALN-LKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDAEVSKVV--------- 217 (461)
T ss_pred CCCC--ceEEcchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCHHHHHHH---------
Confidence 3221 11333332222 22357899999999999999999999999999999988 66665444333322
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--CeE--EEcCC--
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NEV--EFENG-- 298 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~v--~~~~g-- 298 (381)
.+.+++.+++++.+ +.+++. +++ .+.+|
T Consensus 218 --------------------------------------------~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~ 253 (461)
T TIGR01350 218 --------------------------------------------AKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGET 253 (461)
T ss_pred --------------------------------------------HHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcE
Confidence 33446667888877 776653 344 33456
Q ss_pred cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 299 KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 299 ~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
+++++|.+++|+|.+|+...++. +..++ ++.+|++.+| +.++++.|+||++|||...+. .|..||+.+|++|.+
T Consensus 254 ~~i~~D~vi~a~G~~p~~~~l~~-~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 254 ETLTGEKVLVAVGRKPNTEGLGL-ENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred EEEEeCEEEEecCCcccCCCCCc-HhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 57999999999999999864333 33566 6788999998 567788999999999987644 899999999999986
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 332 ~ 332 (461)
T TIGR01350 332 K 332 (461)
T ss_pred C
Confidence 4
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=259.01 Aligned_cols=277 Identities=19% Similarity=0.254 Sum_probs=190.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||||+++|..|+++|++|+|||+.+.+||.+.. +++.+. .+.+++..+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~~--------l~~~~~~~~ 196 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY---------------GIPEFR--------LPKETVVKK 196 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee---------------cCCCcc--------CCccHHHHH
Confidence 378999999999999999999999999999998888875431 111111 112346666
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.++++++++++++.+. .. +...+. ...+.||.||+|||+. |+.+++||.+. .+ +++..++
T Consensus 197 ~~~~~~~~gv~i~~~~~v~--------~~--v~~~~~----~~~~~~d~viiAtGa~~~~~l~ipG~~~-~g-V~~~~~~ 260 (464)
T PRK12831 197 EIENIKKLGVKIETNVVVG--------KT--VTIDEL----LEEEGFDAVFIGSGAGLPKFMGIPGENL-NG-VFSANEF 260 (464)
T ss_pred HHHHHHHcCCEEEcCCEEC--------Cc--CCHHHH----HhccCCCEEEEeCCCCCCCCCCCCCcCC-cC-cEEHHHH
Confidence 6677778899988887552 11 222221 1245699999999994 88888998753 22 3322221
Q ss_pred C-------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 162 E-------------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 162 ~-------------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
. ......+++++|||+|.+|+|+|..+.++|.+|++++|++...+|....+
T Consensus 261 l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e---------------- 324 (464)
T PRK12831 261 LTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE---------------- 324 (464)
T ss_pred HHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH----------------
Confidence 1 11224689999999999999999999999999999998763222221111
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C----eEEEc----
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N----EVEFE---- 296 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~----~v~~~---- 296 (381)
.+.+.+.+|+++.. +.++.. + ++.+.
T Consensus 325 ------------------------------------------~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~ 362 (464)
T PRK12831 325 ------------------------------------------VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMEL 362 (464)
T ss_pred ------------------------------------------HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEe
Confidence 11122334444433 333321 1 11110
Q ss_pred --------------CC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc
Q 035902 297 --------------NG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 297 --------------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
+| .++++|.||+|+|+.|+.. ++. +..++ ++++|++.++...++|+.|+|||+||++.++.
T Consensus 363 ~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~-~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~ 440 (464)
T PRK12831 363 GEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL-ISS-TTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA 440 (464)
T ss_pred cCcCCCCCccceecCCceEEEECCEEEECCCCCCChh-hhc-ccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch
Confidence 22 2699999999999999985 333 32455 67789999983337799999999999988765
Q ss_pred ---CccHHHHHHHHHhhhcccc
Q 035902 360 ---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~l~~ 378 (381)
.|+.+|+.+|.+|+.+|..
T Consensus 441 ~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 441 TVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999865
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=257.43 Aligned_cols=270 Identities=20% Similarity=0.235 Sum_probs=187.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.. ++ +.+....++...
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~---------------gi---------p~~~~~~~~~~~ 188 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY---------------GI---------PEFRLPKEIVVT 188 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee---------------cC---------CCccCCHHHHHH
Confidence 479999999999999999999999999999999877765421 11 111112355555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC-CCCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE-NGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~-~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.++++++++++++.+. .. +.+.+. ...||+||+|||+ .|..|.+||.+. .+ +++..++
T Consensus 189 ~~~~l~~~gv~~~~~~~v~--------~~--v~~~~~------~~~yd~viiAtGa~~p~~~~ipG~~~-~g-v~~~~~~ 250 (449)
T TIGR01316 189 EIKTLKKLGVTFRMNFLVG--------KT--ATLEEL------FSQYDAVFIGTGAGLPKLMNIPGEEL-CG-VYSANDF 250 (449)
T ss_pred HHHHHHhCCcEEEeCCccC--------Cc--CCHHHH------HhhCCEEEEeCCCCCCCcCCCCCCCC-CC-cEEHHHH
Confidence 5566677788888776441 11 333322 2469999999998 588888888652 22 3332221
Q ss_pred C--------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 162 E--------------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 162 ~--------------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
. ......+++++|||+|.+|+|+|..+.++|.+|+++.|++....+..
T Consensus 251 l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~------------------ 312 (449)
T TIGR01316 251 LTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR------------------ 312 (449)
T ss_pred HHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC------------------
Confidence 1 01123579999999999999999999999999999999862111110
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC------eEEEc---
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN------EVEFE--- 296 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~------~v~~~--- 296 (381)
....+.+++.+|+++.. +.++..+ ++.+.
T Consensus 313 ----------------------------------------~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~ 352 (449)
T TIGR01316 313 ----------------------------------------VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMD 352 (449)
T ss_pred ----------------------------------------HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEE
Confidence 01123344556666654 4444321 12221
Q ss_pred ------CC-----------cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 297 ------NG-----------KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 297 ------~g-----------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
+| +++++|.||+|+|+.|+.. ++. . .++ ++++|++.+| +.++|+.|||||+||+++++
T Consensus 353 ~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~-~l~-~-~gl~~~~~G~i~vd-~~~~Ts~~~VfA~GD~~~g~ 428 (449)
T TIGR01316 353 CQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI-MAE-T-TRLKTSERGTIVVD-EDQRTSIPGVFAGGDIILGA 428 (449)
T ss_pred ecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch-hhh-c-cCcccCCCCeEEeC-CCCccCCCCEEEecCCCCCc
Confidence 22 3689999999999999974 343 3 555 6778999998 56778999999999998766
Q ss_pred c---CccHHHHHHHHHhhhcc
Q 035902 359 H---GISIDAKNIANDINLAL 376 (381)
Q Consensus 359 ~---~a~~~a~~~a~~i~~~l 376 (381)
. .|+.+|+.+|.+|+.+|
T Consensus 429 ~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 429 ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 5 89999999999998875
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=246.70 Aligned_cols=252 Identities=33% Similarity=0.562 Sum_probs=206.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------C-CCCeeeecCCcccccCCCCCCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR--------A-YDRMKLHLAKQFCELPHMPFPSRTPT 72 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (381)
..++|+|||||+|||.+|+.|.++|.+++++||.+++||+|... . |..+..+.++.+++++++|++...+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 46899999999999999999999999999999999999999865 4 89999999999999999999998665
Q ss_pred -CCCHHHHHHHHHHHHHHhCCc--cccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC--CCCCCCCC
Q 035902 73 -FVPRISFINYVDNYVSQMGIN--PRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN--GLIPEVPG 147 (381)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--~~~~~~~g 147 (381)
+++..++.+||+.+++++++. +.++++|..++...+ +.|.|...+.... .....+|.|++|||.. |+.|.++|
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 488889999999999999875 567777777776542 6899999876432 3578899999999998 89999888
Q ss_pred --CCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC-cceechhhHHHHHHHHhhCcHH
Q 035902 148 --LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP-VHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~-~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
++.++|.++|+.+|.....+.+|+|+|||.|.||+|++..+++.+++|++..+.. ....+
T Consensus 163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~----------------- 225 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEP----------------- 225 (448)
T ss_pred CchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccc-----------------
Confidence 6789999999999999999999999999999999999999999998888876510 00000
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeE-EEcCCcEeec
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEV-EFENGKIEEF 303 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v-~~~~g~~~~~ 303 (381)
......++..+..|+.+++++. .+.++....+
T Consensus 226 -----------------------------------------------~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~ 258 (448)
T KOG1399|consen 226 -----------------------------------------------PEILGENLWQVPSIKSFTEDGSVFEKGGPVERV 258 (448)
T ss_pred -----------------------------------------------cceeecceEEccccccccCcceEEEcCceeEEe
Confidence 0001123333333666677774 4456678899
Q ss_pred cEEEEecCCCCCcchh
Q 035902 304 EAIIFATGYKSTVRNW 319 (381)
Q Consensus 304 D~vi~a~G~~p~~~~~ 319 (381)
|.||+|||+.-.++++
T Consensus 259 D~ii~ctgy~y~fPfl 274 (448)
T KOG1399|consen 259 DRIIFCTGYKYKFPFL 274 (448)
T ss_pred eeEEEeeeeEeeccee
Confidence 9999999999887543
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=255.54 Aligned_cols=300 Identities=16% Similarity=0.179 Sum_probs=193.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCCeee-ecCCccc-----ccCCCCCCCCCCCCCCHH
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYDRMKL-HLAKQFC-----ELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~ 77 (381)
+|+||||||+|+++|..+++.|.+|+|||++. +|| ..+..+.+.-.+ .....+. .......... ....+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG-SISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC-CCccCHH
Confidence 69999999999999999999999999999975 455 444444332111 1000000 0000110000 0011222
Q ss_pred HHHHH-----------HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 78 SFINY-----------VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 78 ~~~~~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
.+..+ .+..+++.++++..+ ++..++ .+...|..+++ ..+++||+||||||+.|..|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~----~~~v~v~~~~~----~~~~~~d~lviATGs~p~~~p~~ 150 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFET----DHRVRVEYGDK----EEVVDAEQFIIAAGSEPTELPFA 150 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcc----CCEEEEeeCCC----cEEEECCEEEEeCCCCCCCCCCC
Confidence 22222 122333345554322 222221 24444444322 25799999999999999877776
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 147 GLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
+.+.. .++++.+.... ...+++++|||+|++|+|+|..+.+.|.+|+++.+.+ .++|..+.++...+
T Consensus 151 ~~~~~--~v~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~~~l--------- 217 (458)
T PRK06912 151 PFDGK--WIINSKHAMSL-PSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIAHIL--------- 217 (458)
T ss_pred CCCCC--eEEcchHHhCc-cccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHHHHH---------
Confidence 65431 23444333332 2357899999999999999999999999999999988 67676554433332
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEc-CC--c
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFE-NG--K 299 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~-~g--~ 299 (381)
.+.+++.+++++.+ +++++.+ .+.+. ++ +
T Consensus 218 --------------------------------------------~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~ 253 (458)
T PRK06912 218 --------------------------------------------REKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQ 253 (458)
T ss_pred --------------------------------------------HHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceE
Confidence 33445668888877 7777653 34443 34 3
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++++|.+++|+|++|+.+.+.. +..++ ++++| +.+| +.++++.|||||+||+.+.+. .|..||+.+|.+|.+.
T Consensus 254 ~i~~D~vivA~G~~p~~~~l~l-~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 254 EVNAEFVLVSVGRKPRVQQLNL-EKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred EEEeCEEEEecCCccCCCCCCc-hhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999864422 33555 55566 8888 567789999999999997654 8999999999999763
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=262.22 Aligned_cols=308 Identities=15% Similarity=0.157 Sum_probs=193.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC-CCCCC-CcCCCCCC-CeeeecCCc-----------ccccC--CCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE-DCSAS-LWKKRAYD-RMKLHLAKQ-----------FCELP--HMPF 66 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~-~~~g~-~~~~~~~~-~~~~~~~~~-----------~~~~~--~~~~ 66 (381)
+|||+|||+|++|..+|..+++.|.+|+|||+. ..+|| ..+..+.+ ++....... .+++. .++.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 589999999999999999999999999999974 35777 23333332 221111100 11111 0000
Q ss_pred ------CC--CC--CCCCCHHHHHHHHHHHHHHh--CCc-------cccccEEEEEEEeCCCCeE----EEEEe-ecCCC
Q 035902 67 ------PS--RT--PTFVPRISFINYVDNYVSQM--GIN-------PRYHRSVESASYDENAKAW----IIVAK-NTALD 122 (381)
Q Consensus 67 ------~~--~~--~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~v~~i~~~~~~~~~----~v~~~-~~~~~ 122 (381)
+. .. ........+.++.+...++. ++. +...++...+.... +.| +|... ++
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~--a~f~~~~~v~v~~~g--- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER--GHIVDKNTIKSEKSG--- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE--EEEecCCeEEEccCC---
Confidence 00 00 01123334444333332221 110 11111222222211 111 13332 22
Q ss_pred ceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 123 AYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 123 ~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+.+.||+||||||+.|..|++++.+.. .++++.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+
T Consensus 271 --~~i~ad~lIIATGS~P~~P~~~~~~~~--~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 271 --KEFKVKNIIIATGSTPNIPDNIEVDQK--SVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred --EEEECCEEEEcCCCCCCCCCCCCCCCC--cEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 579999999999999988876554431 2444433332 23357899999999999999999999999999999998
Q ss_pred cceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEc
Q 035902 203 VHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVF 282 (381)
Q Consensus 203 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 282 (381)
.++|..+.++...+.+.+ +++.+|+++
T Consensus 346 -~ll~~~d~eis~~l~~~l----------------------------------------------------l~~~GV~I~ 372 (659)
T PTZ00153 346 -QLLPLLDADVAKYFERVF----------------------------------------------------LKSKPVRVH 372 (659)
T ss_pred -cccccCCHHHHHHHHHHH----------------------------------------------------hhcCCcEEE
Confidence 777766655544443322 245678888
Q ss_pred cC--cceEeCC----eEEE--cC-------C--------cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCC
Q 035902 283 PS--ITSINRN----EVEF--EN-------G--------KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCP 339 (381)
Q Consensus 283 ~~--v~~v~~~----~v~~--~~-------g--------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~ 339 (381)
.+ |++++.+ .+.+ .+ + +++++|.|++|+|++||++.+.. +..++...+|++.+| +
T Consensus 373 ~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l-~~~gi~~~~G~I~VD-e 450 (659)
T PTZ00153 373 LNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGL-DKLKIQMKRGFVSVD-E 450 (659)
T ss_pred cCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCc-hhcCCcccCCEEeEC-C
Confidence 77 7777643 1332 21 1 37999999999999999975533 335653235889998 4
Q ss_pred CCCCC------CCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 340 NHWKG------ENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 340 ~~~~~------~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
.++++ .|||||+|||.+.++ .|..||+.++++|.+.
T Consensus 451 ~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 451 HLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 55554 689999999998654 8899999999999864
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=248.67 Aligned_cols=280 Identities=17% Similarity=0.222 Sum_probs=198.4
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+|+|||||+||+.+|..|+++ +.+|+|||+++... |.. .. +..........++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~-------------~~--~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSG-------------ML--PGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccc-------------hh--hHHHheeCCHHHhcc
Confidence 589999999999999999754 57999999887421 000 00 000011223445655
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC-
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK- 160 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~- 160 (381)
.+.+++++++++++. .+|.+++.++ +. |.+.++ +++.||+||+|||+.+..|.+||..+. .+....
T Consensus 59 ~~~~~~~~~gv~~~~-~~v~~id~~~--~~--V~~~~g-----~~~~yD~LviAtG~~~~~~~i~g~~~~---~~~~~~~ 125 (364)
T TIGR03169 59 DLRRLARQAGARFVI-AEATGIDPDR--RK--VLLANR-----PPLSYDVLSLDVGSTTPLSGVEGAADL---AVPVKPI 125 (364)
T ss_pred cHHHHHHhcCCEEEE-EEEEEEeccc--CE--EEECCC-----CcccccEEEEccCCCCCCCCCCccccc---ccccCCH
Confidence 666777778888765 5799898765 43 777776 579999999999999999999885431 111110
Q ss_pred ---------CCCCC--CCCCCeEEEEcCCCCHHHHHHHHhh----CC--CeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 161 ---------YENGG--KFIGKNVLVVGCGNSGMEIAYDLSS----CG--ACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 161 ---------~~~~~--~~~~~~v~viG~G~~~~e~a~~l~~----~g--~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
+.... ...+++++|+|+|.+|+|+|..|++ .| .+|+++ +.+ .+++....++...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~~~~~~------- 196 (364)
T TIGR03169 126 ENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPAKVRRL------- 196 (364)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCHHHHHH-------
Confidence 00001 1135799999999999999999985 34 479998 444 4444332222222
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEcCCcEe
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFENGKIE 301 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~~g~~~ 301 (381)
+.+.+++.+|+++.+ +++++++.+.+.+|+++
T Consensus 197 ----------------------------------------------~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i 230 (364)
T TIGR03169 197 ----------------------------------------------VLRLLARRGIEVHEGAPVTRGPDGALILADGRTL 230 (364)
T ss_pred ----------------------------------------------HHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEE
Confidence 244557788999887 88888778889899999
Q ss_pred eccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCC-CCCcEEEEecccccc--------cCccHHHHHHHHH
Q 035902 302 EFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWK-GENGLYCAGFSRTGL--------HGISIDAKNIAND 371 (381)
Q Consensus 302 ~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~~~ifa~Gd~~~~~--------~~a~~~a~~~a~~ 371 (381)
++|.+++|+|.+|+. ++. . .++ ++++|++.+| +..++ +.|||||+|||+... ..|+.||+.+|+|
T Consensus 231 ~~D~vi~a~G~~p~~--~l~-~-~gl~~~~~g~i~vd-~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~n 305 (364)
T TIGR03169 231 PADAILWATGARAPP--WLA-E-SGLPLDEDGFLRVD-PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAAN 305 (364)
T ss_pred ecCEEEEccCCChhh--HHH-H-cCCCcCCCCeEEEC-CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHH
Confidence 999999999999985 333 3 344 6778999998 44554 899999999997532 1689999999999
Q ss_pred hhhccccC
Q 035902 372 INLALTDH 379 (381)
Q Consensus 372 i~~~l~~~ 379 (381)
|...+...
T Consensus 306 i~~~l~g~ 313 (364)
T TIGR03169 306 LRASLRGQ 313 (364)
T ss_pred HHHHhcCC
Confidence 99887654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=253.94 Aligned_cols=297 Identities=14% Similarity=0.145 Sum_probs=189.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCC-CeeeecCCccccc---CCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRAYD-RMKLHLAKQFCEL---PHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 77 (381)
+||++|||+||+|..+|.. ..|.+|+|||++ .+|| ..+..+.+ ++........... ..+-.... .......
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 6999999999999998654 469999999985 4666 34444333 2211111100000 00000000 0011122
Q ss_pred HHHHHHHH------------H-H--HHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 78 SFINYVDN------------Y-V--SQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 78 ~~~~~~~~------------~-~--~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.++... . . ++.+++++.++.+.. + .++|.+.++ ..++||+||+|||+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~----~---~~~V~~~~g-----~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV----G---PRTLRTGDG-----EEITGDQIVIAAGSRPYI 145 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe----c---CCEEEECCC-----cEEEeCEEEEEECCCCCC
Confidence 22222111 1 1 114555554433211 1 233666554 569999999999999988
Q ss_pred CCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCc
Q 035902 143 PEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLP 222 (381)
Q Consensus 143 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~ 222 (381)
|+..+... ....++.+.....+ .+++++|||+|++|+|+|..+.+.|.+|+++.+.+ .+++..+.++...+.+
T Consensus 146 p~~~~~~~--~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~l~~--- 218 (452)
T TIGR03452 146 PPAIADSG--VRYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDRFTE--- 218 (452)
T ss_pred CCCCCCCC--CEEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCHHHHHHHHH---
Confidence 76433221 11233333322222 47999999999999999999999999999999988 5666554443322211
Q ss_pred HHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEc
Q 035902 223 CKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFE 296 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~ 296 (381)
. .+.+++++.+ +++++. ++ +.+.
T Consensus 219 --------------------------------------------------~-~~~gI~i~~~~~V~~i~~~~~~v~v~~~ 247 (452)
T TIGR03452 219 --------------------------------------------------I-AKKKWDIRLGRNVTAVEQDGDGVTLTLD 247 (452)
T ss_pred --------------------------------------------------H-HhcCCEEEeCCEEEEEEEcCCeEEEEEc
Confidence 1 1235677765 677753 23 4556
Q ss_pred CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 297 NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+|+++++|.+++++|++|+.+.+.. +..++ ++++|++.+| +.++|+.|+|||+|||++.+. .|..||+.+|+||
T Consensus 248 ~g~~i~~D~vl~a~G~~pn~~~l~~-~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni 325 (452)
T TIGR03452 248 DGSTVTADVLLVATGRVPNGDLLDA-EAAGVEVDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNL 325 (452)
T ss_pred CCCEEEcCEEEEeeccCcCCCCcCc-hhcCeeECCCCcEeeC-CCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHh
Confidence 7889999999999999999965433 44566 7788999999 566799999999999987644 7899999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 326 ~~~ 328 (452)
T TIGR03452 326 LHP 328 (452)
T ss_pred cCC
Confidence 864
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=254.90 Aligned_cols=274 Identities=21% Similarity=0.252 Sum_probs=193.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||+|+++|..|++.|++|+|||+.+.+||.+... . +.+....++..+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~~~~ 196 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIVDRE 196 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHHHHH
Confidence 789999999999999999999999999999998887653221 0 1111224666666
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+.++++++++++++.+. .. +.+.+ ..+.||+||+|||+. +..+.++|.+. .+ +++..++.
T Consensus 197 ~~~l~~~gv~~~~~~~v~--------~~--v~~~~------~~~~~d~vvlAtGa~~~~~~~i~G~~~-~g-v~~~~~~l 258 (457)
T PRK11749 197 VERLLKLGVEIRTNTEVG--------RD--ITLDE------LRAGYDAVFIGTGAGLPRFLGIPGENL-GG-VYSAVDFL 258 (457)
T ss_pred HHHHHHcCCEEEeCCEEC--------Cc--cCHHH------HHhhCCEEEEccCCCCCCCCCCCCccC-CC-cEEHHHHH
Confidence 777777898888777651 11 22222 126799999999996 77777888653 22 33322211
Q ss_pred C--------CCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 163 N--------GGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 163 ~--------~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
. .....+++++|||+|.+|+|+|..+.+.|. +|+++.|++...+|....
T Consensus 259 ~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~---------------------- 316 (457)
T PRK11749 259 TRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE---------------------- 316 (457)
T ss_pred HHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH----------------------
Confidence 1 111258999999999999999999999987 899999976322332111
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe-----EEEc----------
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE-----VEFE---------- 296 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~-----v~~~---------- 296 (381)
..+.+++.+|+++.+ +.++.++. +.+.
T Consensus 317 ------------------------------------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~ 360 (457)
T PRK11749 317 ------------------------------------EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDAS 360 (457)
T ss_pred ------------------------------------HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCC
Confidence 123334556666655 55554321 4331
Q ss_pred ---------CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccH
Q 035902 297 ---------NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISI 363 (381)
Q Consensus 297 ---------~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~ 363 (381)
+++++++|.||+++|++|+.. ++. ...++ ++++|++.++...+.|+.|+||++||++.+.. .|+.
T Consensus 361 g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-l~~-~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~ 438 (457)
T PRK11749 361 GRRRVPIEGSEFTLPADLVIKAIGQTPNPL-ILS-TTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVG 438 (457)
T ss_pred CCcccCCCCceEEEECCEEEECccCCCCch-hhc-cccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHH
Confidence 234799999999999999964 333 32455 77889999984357789999999999987643 8999
Q ss_pred HHHHHHHHhhhccccC
Q 035902 364 DAKNIANDINLALTDH 379 (381)
Q Consensus 364 ~a~~~a~~i~~~l~~~ 379 (381)
+|+.+|.+|...|+..
T Consensus 439 ~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 439 DGKDAAEAIHEYLEGA 454 (457)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988653
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=267.02 Aligned_cols=279 Identities=20% Similarity=0.206 Sum_probs=199.0
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 6 VVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 6 vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
|+|||||+||+.+|..|++. +.+|+|||+++.++ |..+.+ +..+....+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--------------~~~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--------------SSVLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--------------cHHHCCCCCHHHccCC
Confidence 68999999999999999876 45899999998653 111100 0001111122333333
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
..+++++.+++++++++|++++... + .|.+.++ ..+.||+||+|||+.|+.|++||.+.. + ++......
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~--k--~V~~~~g-----~~~~yD~LVlATGs~p~~p~ipG~~~~-~-v~~~rt~~ 128 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQ--K--QVITDAG-----RTLSYDKLILATGSYPFILPIPGADKK-G-VYVFRTIE 128 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCC--C--EEEECCC-----cEeeCCEEEECCCCCcCCCCCCCCCCC-C-EEEeCCHH
Confidence 3445566799999999999998754 3 3777766 679999999999999999999997642 2 33322211
Q ss_pred CC-----CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHHHHHHHHHhhh
Q 035902 163 NG-----GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLVDFIVVMLSKM 236 (381)
Q Consensus 163 ~~-----~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (381)
+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++++. +......
T Consensus 129 d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld~~~~~~-------------------- 187 (785)
T TIGR02374 129 DLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLDQTAGRL-------------------- 187 (785)
T ss_pred HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcCHHHHHH--------------------
Confidence 11 11247899999999999999999999999999999888 554432 2221211
Q ss_pred hhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEEec
Q 035902 237 KFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIFAT 310 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~a~ 310 (381)
+.+.+++.+|+++.+ ++++.++ .+.+.+|+++++|.||+++
T Consensus 188 ---------------------------------l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~ 234 (785)
T TIGR02374 188 ---------------------------------LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAA 234 (785)
T ss_pred ---------------------------------HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECC
Confidence 234456678888877 7777643 4778899999999999999
Q ss_pred CCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc-------CccHHHHHHHHHhhhc
Q 035902 311 GYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH-------GISIDAKNIANDINLA 375 (381)
Q Consensus 311 G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~-------~a~~~a~~~a~~i~~~ 375 (381)
|++|+.. +.. + .++-. +|.+.+| +.++|+.|||||+|||+.... .|..||+.+|+||.+.
T Consensus 235 G~~Pn~~-la~-~-~gl~~-~ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 235 GIRPNDE-LAV-S-AGIKV-NRGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred CCCcCcH-HHH-h-cCCcc-CCCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 9999986 333 2 55422 2557787 567789999999999975322 5789999999999874
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=266.69 Aligned_cols=273 Identities=19% Similarity=0.222 Sum_probs=190.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||++||..|++.|++|+|||+.+.+||.+.. + +|.+....++.+..
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y---------------G---------IP~~rlp~~vi~~~ 362 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY---------------G---------IPEFRLPNQLIDDV 362 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc---------------c---------CCCCcChHHHHHHH
Confidence 78999999999999999999999999999999988886432 1 12333345667766
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+.+++.|+++++++.+. .. +++++. ....||+||+|||+. |+.+++||.+. .| ++...++.
T Consensus 363 i~~l~~~Gv~f~~n~~vG--------~d--it~~~l-----~~~~yDAV~LAtGA~~pr~l~IpG~dl-~G-V~~a~dfL 425 (944)
T PRK12779 363 VEKIKLLGGRFVKNFVVG--------KT--ATLEDL-----KAAGFWKIFVGTGAGLPTFMNVPGEHL-LG-VMSANEFL 425 (944)
T ss_pred HHHHHhhcCeEEEeEEec--------cE--EeHHHh-----ccccCCEEEEeCCCCCCCcCCCCCCcC-cC-cEEHHHHH
Confidence 677788899988876551 11 444433 345799999999996 88888998643 22 23222211
Q ss_pred C---------------CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 163 N---------------GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 163 ~---------------~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
. .....+++++|||||.+|+|+|..+.++|++|++++|++....|.....+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~------------ 493 (944)
T PRK12779 426 TRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHH------------ 493 (944)
T ss_pred HHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHH------------
Confidence 0 1123579999999999999999999999999999999873233322111110
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe----------------
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN---------------- 289 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~---------------- 289 (381)
..+.+++++.. +.++.
T Consensus 494 ----------------------------------------------a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~ 527 (944)
T PRK12779 494 ----------------------------------------------ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVN 527 (944)
T ss_pred ----------------------------------------------HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEE
Confidence 01112222221 22221
Q ss_pred ------CCe--EEEcCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 290 ------RNE--VEFENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 290 ------~~~--v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
.++ ....+| .++++|.||+|+|+.|+.. +.. ...++ ++++|++.++.....|+.|+|||+||++.+.
T Consensus 528 ~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~-~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~ 605 (944)
T PRK12779 528 ELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKD-AEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG 605 (944)
T ss_pred EeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhh-cccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh
Confidence 101 111123 4699999999999999974 333 22455 6788999998445678999999999999876
Q ss_pred c---CccHHHHHHHHHhhhccc
Q 035902 359 H---GISIDAKNIANDINLALT 377 (381)
Q Consensus 359 ~---~a~~~a~~~a~~i~~~l~ 377 (381)
. .|+.+|+.+|++|.++|.
T Consensus 606 ~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 606 STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4 999999999999998875
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=261.08 Aligned_cols=285 Identities=22% Similarity=0.262 Sum_probs=184.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||||++||+.|+++|++|+|||+.+.+||.+... . +.+....++...
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------I---------P~~Rlp~evL~~ 594 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------I---------PQFRIPAELIQH 594 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------c---------ccccccHHHHHH
Confidence 3789999999999999999999999999999998888754321 1 112222344555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.+.++|+++++++.+ .+.. .+. ....||+||||||++ +..+.++|.+. .+++..++
T Consensus 595 die~l~~~GVe~~~gt~V-di~l-----------e~L-----~~~gYDaVILATGA~~~~~l~IpG~~~---gV~saldf 654 (1019)
T PRK09853 595 DIEFVKAHGVKFEFGCSP-DLTV-----------EQL-----KNEGYDYVVVAIGADKNGGLKLEGGNQ---NVIKALPF 654 (1019)
T ss_pred HHHHHHHcCCEEEeCcee-EEEh-----------hhh-----eeccCCEEEECcCCCCCCCCCCCCccC---CceehHHH
Confidence 556667789998888766 2222 111 345699999999998 55566777541 13332222
Q ss_pred CCC------CCCCCCeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 162 ENG------GKFIGKNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 162 ~~~------~~~~~~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
... ....+++++|||||.+|+|+|..+.+.+ .+|+++.|++...+|....++...+
T Consensus 655 L~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al---------------- 718 (1019)
T PRK09853 655 LEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL---------------- 718 (1019)
T ss_pred HHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH----------------
Confidence 111 1235899999999999999999998874 4899999987444444332221111
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhc-CCCeEEccC-cceEeCC----eEEEcCCcEeeccEEE
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR-KGEIQVFPS-ITSINRN----EVEFENGKIEEFEAII 307 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi 307 (381)
..|+.. .....+ ..+. ++++.+..- +...+.+ .+...++.++++|.||
T Consensus 719 ---------eeGVe~----------~~~~~p-------~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VI 772 (1019)
T PRK09853 719 ---------EDGVEF----------KELLNP-------ESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVI 772 (1019)
T ss_pred ---------HcCCEE----------EeCCce-------EEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEE
Confidence 111110 000000 0000 111111100 0011111 1222344689999999
Q ss_pred EecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhccc
Q 035902 308 FATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLALT 377 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l~ 377 (381)
+|+|.+|+.+. +. . .++ ++++|++.++ +..+++.|||||+||++.++. .|+.+|+.+|++|.+.+.
T Consensus 773 vAIG~~Pntel-le-~-~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 773 TAIGEQVDTEL-LK-A-NGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred ECCCCcCChhH-HH-h-cCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999864 34 3 565 6788999987 566788999999999987654 899999999999988654
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=220.37 Aligned_cols=305 Identities=16% Similarity=0.182 Sum_probs=208.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCCeee-ecC--------CcccccCCCC-CCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-WKKRAYDRMKL-HLA--------KQFCELPHMP-FPSRTP 71 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~-~~~--------~~~~~~~~~~-~~~~~~ 71 (381)
++|.+|||||..|+.+|+..++.|.++.|+|..-.+||+ -+..+.++-.+ ..+ ..-++|+... ...+|.
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~ 99 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWK 99 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHH
Confidence 489999999999999999999999999999987555552 22222221111 000 1111222210 001222
Q ss_pred CCC-CHHHHHHHHHHHHHH----hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 72 TFV-PRISFINYVDNYVSQ----MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 72 ~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
.+. .++.....|....++ .++.++.+. . .... .+...|...++ ....+++++++||+|.+|.+|++|
T Consensus 100 ~ik~krdayi~RLngIY~~~L~k~~V~~i~G~-a---~f~~-~~~v~V~~~d~---~~~~Ytak~iLIAtGg~p~~PnIp 171 (478)
T KOG0405|consen 100 VIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR-A---RFVS-PGEVEVEVNDG---TKIVYTAKHILIATGGRPIIPNIP 171 (478)
T ss_pred HHHhhhhHHHHHHHHHHHhhccccceeEEeee-E---EEcC-CCceEEEecCC---eeEEEecceEEEEeCCccCCCCCC
Confidence 211 223333333322222 122222211 1 1111 23334555554 124589999999999999999999
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 147 GLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
|.+. -+.+..+++.++ .++|++|+|+|++|+|+|..++.+|.+++++.|.+ .++..++..+...+.+.
T Consensus 172 G~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~~i~~~v~~~------ 239 (478)
T KOG0405|consen 172 GAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDEMISDLVTEH------ 239 (478)
T ss_pred chhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhHHHHHHHHHH------
Confidence 9874 266666666655 69999999999999999999999999999999999 67666666555444443
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcCCc
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFENGK 299 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~g~ 299 (381)
+...++++++. ++++... .+....+.
T Consensus 240 -----------------------------------------------~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~ 272 (478)
T KOG0405|consen 240 -----------------------------------------------LEGRGINVHKNSSVTKVIKTDDGLELVITSHGT 272 (478)
T ss_pred -----------------------------------------------hhhcceeecccccceeeeecCCCceEEEEeccc
Confidence 35567777776 5555432 24445666
Q ss_pred EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 300 IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 300 ~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
...+|.++||+|++|++..+.. ++.|+ ++..|.+++| +...|+.|+||++||+.+-.. .|...|+.+++.+.+.
T Consensus 273 i~~vd~llwAiGR~Pntk~L~l-e~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 273 IEDVDTLLWAIGRKPNTKGLNL-ENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred cccccEEEEEecCCCCcccccc-hhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcC
Confidence 6669999999999999987766 77888 8999999999 677899999999999987654 9999999999998874
Q ss_pred c
Q 035902 376 L 376 (381)
Q Consensus 376 l 376 (381)
-
T Consensus 351 ~ 351 (478)
T KOG0405|consen 351 G 351 (478)
T ss_pred C
Confidence 3
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=262.82 Aligned_cols=273 Identities=21% Similarity=0.239 Sum_probs=186.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||++||..|+++|++|+|||+.+.+||.+.. +++. +....++.+..
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~---------~rlp~~~~~~~ 487 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPE---------FRLPKKIVDVE 487 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCC---------CCCCHHHHHHH
Confidence 78999999999999999999999999999998878775432 1111 11123455555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+.++++++++++++.+. .. +.+++. ....||+||||||+. |+.+++||.+. .+ +++..++.
T Consensus 488 ~~~l~~~gv~~~~~~~v~--------~~--v~~~~l-----~~~~ydavvlAtGa~~~~~l~ipG~~~-~g-V~~~~~~l 550 (752)
T PRK12778 488 IENLKKLGVKFETDVIVG--------KT--ITIEEL-----EEEGFKGIFIASGAGLPNFMNIPGENS-NG-VMSSNEYL 550 (752)
T ss_pred HHHHHHCCCEEECCCEEC--------Cc--CCHHHH-----hhcCCCEEEEeCCCCCCCCCCCCCCCC-CC-cEEHHHHH
Confidence 566677899988876541 11 333332 346699999999995 88888888653 22 33322211
Q ss_pred -------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 163 -------------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 163 -------------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
......+++++|||+|.+|+|+|..+.++|.+ |++++|++...+|....++
T Consensus 551 ~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~--------------- 615 (752)
T PRK12778 551 TRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV--------------- 615 (752)
T ss_pred HHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH---------------
Confidence 11123579999999999999999999999987 9999998732233221111
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C----eEEE-----
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N----EVEF----- 295 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~----~v~~----- 295 (381)
+.+++.+++++.. +.++.. + ++.+
T Consensus 616 -------------------------------------------~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~ 652 (752)
T PRK12778 616 -------------------------------------------KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMEL 652 (752)
T ss_pred -------------------------------------------HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEe
Confidence 1122233333322 222211 0 1111
Q ss_pred --------------cC-CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc
Q 035902 296 --------------EN-GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 296 --------------~~-g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
++ .+++++|.||+|+|++|+.. ++. ...++ ++++|++.+| +...|+.|||||+||++.++.
T Consensus 653 ~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~-l~~-~~~gl~~~~~G~i~vd-~~~~Ts~~gVfA~GD~~~g~~ 729 (752)
T PRK12778 653 GEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL-VPS-SIPGLELNRKGTIVVD-EEMQSSIPGIYAGGDIVRGGA 729 (752)
T ss_pred cCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc-ccc-cccCceECCCCCEEeC-CCCCCCCCCEEEeCCccCCcH
Confidence 11 23689999999999999974 333 32355 6778999998 456789999999999998754
Q ss_pred ---CccHHHHHHHHHhhhcccc
Q 035902 360 ---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~l~~ 378 (381)
.|+.+|+.+|.+|+++|.+
T Consensus 730 ~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 730 TVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999865
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=206.84 Aligned_cols=291 Identities=18% Similarity=0.216 Sum_probs=209.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||+|||+..+|+++++..++-+|||.-... + .-++-++...-..-++|. +|.-....++.+.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-~-----i~pGGQLtTTT~veNfPG------FPdgi~G~~l~d~m 76 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-G-----IAPGGQLTTTTDVENFPG------FPDGITGPELMDKM 76 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-C-----cCCCceeeeeeccccCCC------CCcccccHHHHHHH
Confidence 48999999999999999999999999999953210 0 001111111111122232 34455678999999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC-C-CCCcceeecCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL-G-SFEGEYMHSSKY 161 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~-~-~~~~~~~~~~~~ 161 (381)
+++..++|.++. ...|.+++... +-|.+.++. +.+++|.||+|||+..+...+||. + +|+.+-+..|..
T Consensus 77 rkqs~r~Gt~i~-tEtVskv~~ss--kpF~l~td~------~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAV 147 (322)
T KOG0404|consen 77 RKQSERFGTEII-TETVSKVDLSS--KPFKLWTDA------RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAV 147 (322)
T ss_pred HHHHHhhcceee-eeehhhccccC--CCeEEEecC------CceeeeeEEEecccceeeeecCCCCcchHHhcccchhhc
Confidence 999999997754 44577787766 667787755 689999999999999887778776 3 388888888988
Q ss_pred CCCCC--CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 162 ENGGK--FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 162 ~~~~~--~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
++... +.+|..+|||||.+|+|-|.+|.+.+++|+++.|++ .+-.+. .+
T Consensus 148 CDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd-~fRAs~----------~M------------------ 198 (322)
T KOG0404|consen 148 CDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRD-HFRASK----------IM------------------ 198 (322)
T ss_pred ccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhh-hhhHHH----------HH------------------
Confidence 88765 789999999999999999999999999999999999 321100 00
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEE-----cCCcEeeccEEE
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEF-----ENGKIEEFEAII 307 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~-----~~g~~~~~D~vi 307 (381)
..+..++.+|+++.+ +.+..++ ++.+ .+...++++-++
T Consensus 199 ------------------------------q~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlF 248 (322)
T KOG0404|consen 199 ------------------------------QQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLF 248 (322)
T ss_pred ------------------------------HHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeE
Confidence 022334567777766 3333333 2222 223578999999
Q ss_pred EecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccc
Q 035902 308 FATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALT 377 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~ 377 (381)
+++|..|++. +++ . +--+|++||+.+.....+|+.|++||+||+-..-. .|...|..+|-...++|.
T Consensus 249 f~IGH~Pat~-~l~-g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 249 FAIGHSPATK-FLK-G-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLT 319 (322)
T ss_pred EEecCCchhh-Hhc-C-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhh
Confidence 9999999995 454 2 33389999999885567799999999999966533 555566666665555554
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=251.82 Aligned_cols=275 Identities=20% Similarity=0.219 Sum_probs=186.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||+|+++|..|++.|++|+|||+++.+||.+... + +.+....++.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHHHH
Confidence 3789999999999999999999999999999999888865321 1 111122345555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC-CCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG-LIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~-~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.+.++|+++++++.+. .+ +...+ ....||.||+|||+.+ ..+.+||.+. .+ ++...++
T Consensus 249 ~~~~l~~~Gv~i~~~~~v~-~d---------v~~~~------~~~~~DaVilAtGa~~~~~~~ipG~~~-~g-v~~~~~~ 310 (652)
T PRK12814 249 DIAPLRAMGAEFRFNTVFG-RD---------ITLEE------LQKEFDAVLLAVGAQKASKMGIPGEEL-PG-VISGIDF 310 (652)
T ss_pred HHHHHHHcCCEEEeCCccc-Cc---------cCHHH------HHhhcCEEEEEcCCCCCCCCCCCCcCc-CC-cEeHHHH
Confidence 5566677788887776441 10 12221 1234999999999984 5677888653 22 2322222
Q ss_pred C-----CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 162 E-----NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 162 ~-----~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
. ......+++++|||+|.+|+|+|..+.++|. +|+++.|++...+|....++...
T Consensus 311 l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a------------------- 371 (652)
T PRK12814 311 LRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEA------------------- 371 (652)
T ss_pred HHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHH-------------------
Confidence 1 1123468999999999999999999999986 69999998743445432221111
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce-------------------
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE------------------- 292 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~------------------- 292 (381)
.+.+|+++.. +.++.. ++
T Consensus 372 ---------------------------------------~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~ 412 (652)
T PRK12814 372 ---------------------------------------LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRR 412 (652)
T ss_pred ---------------------------------------HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCC
Confidence 1112222222 222211 00
Q ss_pred -EEEcCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHH
Q 035902 293 -VEFENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDA 365 (381)
Q Consensus 293 -v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a 365 (381)
....+| ..+++|.||+++|..|++.. +. . .++ ++.+|++.+|...+.|+.|||||+||+..++. .|+.+|
T Consensus 413 ~~~~~~g~~~~i~~D~VI~AiG~~p~~~l-l~-~-~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G 489 (652)
T PRK12814 413 RPVPVEGSEFTLQADTVISAIGQQVDPPI-AE-A-AGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQG 489 (652)
T ss_pred cceecCCceEEEECCEEEECCCCcCCccc-cc-c-cCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHH
Confidence 111122 26899999999999999853 33 3 555 67789999995567789999999999987654 899999
Q ss_pred HHHHHHhhhccccCC
Q 035902 366 KNIANDINLALTDHQ 380 (381)
Q Consensus 366 ~~~a~~i~~~l~~~~ 380 (381)
+.+|++|...|...+
T Consensus 490 ~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 490 KRAAHAIDLFLNGKP 504 (652)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999997654
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=232.37 Aligned_cols=284 Identities=19% Similarity=0.195 Sum_probs=186.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+++|..|++.|.++++||+.+.+++.+... .+ +...+.+.+....
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~--------~~~~~~~~~~~~~ 75 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IP--------EFRIPIERVREGV 75 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cc--------ccccCHHHHHHHH
Confidence 789999999999999999999999999999998777643211 00 0011233444444
Q ss_pred HHHHHHhCCccccccEEEEEEE--eCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCC
Q 035902 84 DNYVSQMGINPRYHRSVESASY--DENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~ 160 (381)
+++. +.++.++.++.+..+.. ....+.+....... +...+.||+||+|||++ +..|++||.+. .+ ++...+
T Consensus 76 ~~l~-~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~lviAtGs~~~~~~~ipg~~~-~~-v~~~~~ 149 (352)
T PRK12770 76 KELE-EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSL---EELVKKYDAVLIATGTWKSRKLGIPGEDL-PG-VYSALE 149 (352)
T ss_pred HHHH-hCCeEEecCcEEeeccccccccccccccccCCH---HHHHhhCCEEEEEeCCCCCCcCCCCCccc-cC-ceeHHH
Confidence 4444 44888888887765532 11112222221111 11247899999999995 77888888653 11 222110
Q ss_pred -------C----C---CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 161 -------Y----E---NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 161 -------~----~---~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
+ . ......+++++|||+|.+|+|+|..+...|.+ |+++.|++....+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~---------------- 213 (352)
T PRK12770 150 YLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG---------------- 213 (352)
T ss_pred HHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC----------------
Confidence 0 0 11122368999999999999999999999986 999998762100000
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEE----
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEF---- 295 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~---- 295 (381)
....+.+++.+++++.+ +.++.++ .+.+
T Consensus 214 ------------------------------------------~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~ 251 (352)
T PRK12770 214 ------------------------------------------KYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMR 251 (352)
T ss_pred ------------------------------------------HHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEE
Confidence 00122234455555554 4444332 1111
Q ss_pred ----------------cCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 296 ----------------ENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 296 ----------------~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
.+++++++|.+|+++|++|++.. .. +..++ ++++|++.+| +..+++.|+||++|||..++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l-~~-~~~g~~~~~~g~i~vd-~~~~t~~~~vyaiGD~~~~~ 328 (352)
T PRK12770 252 LGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPF-AK-ECLGIELNRKGEIVVD-EKHMTSREGVFAAGDVVTGP 328 (352)
T ss_pred ecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchh-hh-cccCceecCCCcEeeC-CCcccCCCCEEEEcccccCc
Confidence 12357999999999999999753 33 22455 6778889888 45678899999999998755
Q ss_pred c---CccHHHHHHHHHhhhccc
Q 035902 359 H---GISIDAKNIANDINLALT 377 (381)
Q Consensus 359 ~---~a~~~a~~~a~~i~~~l~ 377 (381)
. .|+.+|..+|++|.+.|.
T Consensus 329 ~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 329 SKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 4 899999999999999884
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=220.41 Aligned_cols=304 Identities=17% Similarity=0.181 Sum_probs=202.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCC-CeeeecCCcccccCC----------CCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK-KRAYD-RMKLHLAKQFCELPH----------MPFPSRT 70 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~ 70 (381)
++||+|||+||+|..||...++.|++.+.||++..+||+.. ..+.+ +..+..+..+....+ .+...+.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 48999999999999999999999999999999998988533 33322 222221111111111 0100111
Q ss_pred CCCCC-H----HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCC
Q 035902 71 PTFVP-R----ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPE 144 (381)
Q Consensus 71 ~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~ 144 (381)
+.+.. . .++..-++.++++.+++...+. - + ..+ .....+.-.++ +.+.++++++|+|||+. +.
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~-g-s--f~~-p~~V~v~k~dg---~~~ii~aKnIiiATGSeV~~--- 187 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF-G-S--FLD-PNKVSVKKIDG---EDQIIKAKNIIIATGSEVTP--- 187 (506)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee-E-e--ecC-CceEEEeccCC---CceEEeeeeEEEEeCCccCC---
Confidence 11110 1 1223333444555554433221 0 0 111 12222333333 45789999999999996 43
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+||++--...++.+...... +.-|++++|||+|.+|.|+..-+.++|.+||++.--+ .+.+..+.++++.+.+.|
T Consensus 188 ~PGI~IDekkIVSStgALsL-~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk~~qr~L--- 262 (506)
T KOG1335|consen 188 FPGITIDEKKIVSSTGALSL-KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISKAFQRVL--- 262 (506)
T ss_pred CCCeEecCceEEecCCccch-hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHHHHHHHH---
Confidence 44654222335565555544 4469999999999999999999999999999999888 788888888877776665
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFEN 297 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~ 297 (381)
.+.++++..+ +...+.+ .+.+++
T Consensus 263 --------------------------------------------------~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ 292 (506)
T KOG1335|consen 263 --------------------------------------------------QKQGIKFKLGTKVTSATRNGDGPVEIEVEN 292 (506)
T ss_pred --------------------------------------------------HhcCceeEeccEEEEeeccCCCceEEEEEe
Confidence 3345555555 4444432 233332
Q ss_pred ---C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 298 ---G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 298 ---g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
+ ++++||++++++|++|.+..+-. +..|+ .|+.|++.++ ...++..|+||++||+..+++ .|..||..+
T Consensus 293 ak~~k~~tle~DvlLVsiGRrP~t~GLgl-e~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~ 370 (506)
T KOG1335|consen 293 AKTGKKETLECDVLLVSIGRRPFTEGLGL-EKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAA 370 (506)
T ss_pred cCCCceeEEEeeEEEEEccCcccccCCCh-hhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhhhchhh
Confidence 2 48999999999999999977655 66777 7889999998 566789999999999999988 778888888
Q ss_pred HHHhhh
Q 035902 369 ANDINL 374 (381)
Q Consensus 369 a~~i~~ 374 (381)
.+.|..
T Consensus 371 VE~i~g 376 (506)
T KOG1335|consen 371 VEGIAG 376 (506)
T ss_pred eeeecc
Confidence 877754
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=252.72 Aligned_cols=283 Identities=20% Similarity=0.251 Sum_probs=176.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||++||+.|+++|++|+|||+.+.+||..... . +.+....++.++.
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------I---------P~~rlp~e~l~~~ 593 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------I---------PEFRISAESIQKD 593 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------c---------cccCCCHHHHHHH
Confidence 799999999999999999999999999999998888753221 0 1111123444444
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+.+..+|+++++++.. . +.+.+. ....||+||+|||++ +..+.++|... .++...++.
T Consensus 594 ie~l~~~GVe~~~g~~~----------d--~~ve~l-----~~~gYDaVIIATGA~~~~~l~I~G~~~---~v~~avefL 653 (1012)
T TIGR03315 594 IELVKFHGVEFKYGCSP----------D--LTVAEL-----KNQGYKYVILAIGAWKHGPLRLEGGGE---RVLKSLEFL 653 (1012)
T ss_pred HHHHHhcCcEEEEeccc----------c--eEhhhh-----hcccccEEEECCCCCCCCCCCcCCCCc---ceeeHHHHH
Confidence 45556678877665321 0 111111 345699999999998 45556666431 122222211
Q ss_pred C------CCCCCCCeEEEEcCCCCHHHHHHHHhhC-CC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHh
Q 035902 163 N------GGKFIGKNVLVVGCGNSGMEIAYDLSSC-GA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLS 234 (381)
Q Consensus 163 ~------~~~~~~~~v~viG~G~~~~e~a~~l~~~-g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (381)
. .....+++++|||||.+|+|+|..+.+. |. +|+++.|++...+|....++...+
T Consensus 654 ~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al----------------- 716 (1012)
T TIGR03315 654 RAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL----------------- 716 (1012)
T ss_pred HHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH-----------------
Confidence 1 1123589999999999999999998886 74 799999987434443332211111
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--eEEEcCC--cEeeccEEEEe
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--EVEFENG--KIEEFEAIIFA 309 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~v~~~~g--~~~~~D~vi~a 309 (381)
..|+.. ..... ...+..+++.+..- +...+.+ .....+| .++++|.||+|
T Consensus 717 --------eeGVe~----------~~~~~-------p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvA 771 (1012)
T TIGR03315 717 --------EDGVDF----------KELLS-------PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAA 771 (1012)
T ss_pred --------HcCCEE----------EeCCc-------eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEe
Confidence 111110 00000 00011111111100 0000111 1112233 36899999999
Q ss_pred cCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 310 TGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
+|.+|+... +. . .++ ++.+|++.+|.....++.|||||+||+..++. .|+.+|+.+|.+|.+.
T Consensus 772 iG~~Pnt~l-le-~-~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 772 VGEQVDTDL-LQ-K-NGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred cCCcCChHH-HH-h-cCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 999999864 34 3 555 68889999984446789999999999987655 8999999999999864
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=240.86 Aligned_cols=284 Identities=20% Similarity=0.221 Sum_probs=188.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+++|..|++.|.+|+|||+.+.+||.+... + +.+....++....
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~~ 199 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVIDRR 199 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHHHH
Confidence 789999999999999999999999999999998887754321 1 1122223455555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC-
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY- 161 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~- 161 (381)
.+.+.++++++++++.+.. + +.... ....||+||+|||+. +..+.++|.+. .+ +....++
T Consensus 200 ~~~~~~~gv~~~~~~~v~~-~---------~~~~~------~~~~~d~vvlAtGa~~~~~l~ipG~~~-~g-V~~~~~~l 261 (471)
T PRK12810 200 IELMEAEGIEFRTNVEVGK-D---------ITAEE------LLAEYDAVFLGTGAYKPRDLGIPGRDL-DG-VHFAMDFL 261 (471)
T ss_pred HHHHHhCCcEEEeCCEECC-c---------CCHHH------HHhhCCEEEEecCCCCCCcCCCCCccC-CC-cEEHHHHH
Confidence 5667778988888775521 0 11111 234799999999998 77778888653 22 2221100
Q ss_pred ------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 162 ------------ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 162 ------------~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
.......+++++|||+|.+|+|+|..+.+.|. +|+.+.+.+ .|....... .
T Consensus 262 ~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~~-~------------ 325 (471)
T PRK12810 262 IQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRNKN-N------------ 325 (471)
T ss_pred HHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCccccccc-c------------
Confidence 11123468999999999999999999888886 688554333 111110000 0
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccch-hhhhhcCCCeEEccC--cceEeC--Ce---EE-----E
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVG-AMDKIRKGEIQVFPS--ITSINR--NE---VE-----F 295 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~--v~~v~~--~~---v~-----~ 295 (381)
..+..... ..+.+++.+++++.+ +.++.. +. |. +
T Consensus 326 ---------------------------------~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~ 372 (471)
T PRK12810 326 ---------------------------------PWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL 372 (471)
T ss_pred ---------------------------------CCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence 00000000 123344556777665 666643 12 22 2
Q ss_pred cCC---------cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---Ccc
Q 035902 296 ENG---------KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GIS 362 (381)
Q Consensus 296 ~~g---------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~ 362 (381)
.+| +++++|.||+|+|.+|+...++. . .++ ++++|++.++.+.+.|+.|+||++||+.++.. .|+
T Consensus 373 ~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~-~-~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av 450 (471)
T PRK12810 373 GEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA-Q-FGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAI 450 (471)
T ss_pred cCCCccccCCceEEEECCEEEECcCcCCCchhhcc-c-cCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHH
Confidence 122 47999999999999999754554 3 555 77789888874466789999999999987654 799
Q ss_pred HHHHHHHHHhhhccccCC
Q 035902 363 IDAKNIANDINLALTDHQ 380 (381)
Q Consensus 363 ~~a~~~a~~i~~~l~~~~ 380 (381)
.+|+.+|.+|..+|....
T Consensus 451 ~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 451 AEGRQAARAIDAYLMGST 468 (471)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999997643
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=254.68 Aligned_cols=276 Identities=19% Similarity=0.225 Sum_probs=188.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||++||..|+++|++|+|||+.+.+||.... .++.+....++.+..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~------------------------gip~~rl~~e~~~~~ 486 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY------------------------GIPSFRLPRDIIDRE 486 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec------------------------cCCccCCCHHHHHHH
Confidence 78999999999999999999999999999999887764321 112223334666767
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC-
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY- 161 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~- 161 (381)
.+.++++|+++++++.+. .. +...+. .....||+||||||+. |+.+++||.+. .+ +++..++
T Consensus 487 ~~~l~~~Gv~~~~~~~vg--------~~--~~~~~l----~~~~~yDaViIATGa~~pr~l~IpG~~l-~g-V~~a~~fL 550 (1006)
T PRK12775 487 VQRLVDIGVKIETNKVIG--------KT--FTVPQL----MNDKGFDAVFLGVGAGAPTFLGIPGEFA-GQ-VYSANEFL 550 (1006)
T ss_pred HHHHHHCCCEEEeCCccC--------Cc--cCHHHH----hhccCCCEEEEecCCCCCCCCCCCCcCC-CC-cEEHHHHH
Confidence 777788899988876431 11 221111 0124589999999996 88888998642 22 3433221
Q ss_pred -------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 162 -------------ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 162 -------------~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
.+.....+++++|||||.+|+|+|..+.++|. +|+++.|+.....|....+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e--------------- 615 (1006)
T PRK12775 551 TRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE--------------- 615 (1006)
T ss_pred HHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH---------------
Confidence 11122368999999999999999999999997 4888988763222221110
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C----eEEE----
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N----EVEF---- 295 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~----~v~~---- 295 (381)
.+.+++.+|+++.. +.++.. + ++.+
T Consensus 616 -------------------------------------------~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~ 652 (1006)
T PRK12775 616 -------------------------------------------IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEME 652 (1006)
T ss_pred -------------------------------------------HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEE
Confidence 11223334444433 333321 1 1111
Q ss_pred -------------cCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCC----CCCCCCCCcEEEEeccc
Q 035902 296 -------------ENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNC----PNHWKGENGLYCAGFSR 355 (381)
Q Consensus 296 -------------~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~ifa~Gd~~ 355 (381)
.+| .++++|.||+|+|++|+.. ++. ...++ ++..|++.++. ....|+.|+|||+||++
T Consensus 653 l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~-~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~ 730 (1006)
T PRK12775 653 LGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI-ITQ-STPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIV 730 (1006)
T ss_pred ecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh-hhh-ccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcC
Confidence 112 3699999999999999975 333 32344 67788888873 24668999999999998
Q ss_pred cccc---CccHHHHHHHHHhhhccccC
Q 035902 356 TGLH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 356 ~~~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
.++. .|+.+|+.+|.+|+.+|..+
T Consensus 731 ~G~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 731 TGGATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7765 89999999999999998764
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=243.96 Aligned_cols=274 Identities=19% Similarity=0.239 Sum_probs=184.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+... . +.+....++...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------i---------p~~~l~~~~~~~ 382 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------I---------PAFKLDKSLLAR 382 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------C---------CCccCCHHHHHH
Confidence 3789999999999999999999999999999999888764321 1 111112345555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecC--
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSS-- 159 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~-- 159 (381)
..+.++++|+++++++.+.. . +...+ ....||.||+|||+. +..+.++|.+. .| ++...
T Consensus 383 ~~~~~~~~Gv~~~~~~~v~~--------~--i~~~~------~~~~~DavilAtGa~~~~~l~i~g~~~-~G-v~~a~~~ 444 (654)
T PRK12769 383 RREIFSAMGIEFELNCEVGK--------D--ISLES------LLEDYDAVFVGVGTYRSMKAGLPNEDA-PG-VYDALPF 444 (654)
T ss_pred HHHHHHHCCeEEECCCEeCC--------c--CCHHH------HHhcCCEEEEeCCCCCCCCCCCCCCCC-CC-eEEhHHH
Confidence 56667778988888876520 0 11111 123699999999998 44566777543 22 22110
Q ss_pred ------------CCCC--CCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 160 ------------KYEN--GGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 160 ------------~~~~--~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
.... .....+++++|||+|.+|+|+|..+.++|. +|++++|++...+|.....
T Consensus 445 l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e------------ 512 (654)
T PRK12769 445 LIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE------------ 512 (654)
T ss_pred HHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH------------
Confidence 0000 012457899999999999999999999986 6999999873333432211
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--C-C---eEEE-
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--R-N---EVEF- 295 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~-~---~v~~- 295 (381)
.+.+++.+|+++.. +.++. + + ++.+
T Consensus 513 ----------------------------------------------~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~ 546 (654)
T PRK12769 513 ----------------------------------------------VKNAREEGANFEFNVQPVALELNEQGHVCGIRFL 546 (654)
T ss_pred ----------------------------------------------HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEE
Confidence 11222333444333 33332 1 1 1111
Q ss_pred -----------------cCC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCC---CCCCCCCcEEEEe
Q 035902 296 -----------------ENG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCP---NHWKGENGLYCAG 352 (381)
Q Consensus 296 -----------------~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~ifa~G 352 (381)
..| .++++|.||+|+|+.|+...++. . .++ ++.+|++.++.. .++|+.|+|||+|
T Consensus 547 ~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~-~-~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaG 624 (654)
T PRK12769 547 RTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLE-S-HGVTVDKWGRIIADVESQYRYQTSNPKIFAGG 624 (654)
T ss_pred EEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccc-c-cCCcCCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence 012 26999999999999999644554 4 566 788899888732 2568999999999
Q ss_pred ccccccc---CccHHHHHHHHHhhhcccc
Q 035902 353 FSRTGLH---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 353 d~~~~~~---~a~~~a~~~a~~i~~~l~~ 378 (381)
|++.+.. .|+.+|+.+|++|+.+|..
T Consensus 625 D~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 625 DAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 9988765 7999999999999998864
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=234.69 Aligned_cols=272 Identities=18% Similarity=0.240 Sum_probs=185.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||+|+++|..|+++|.+|+|+|+.+.+||.+... + +.+....++.+..
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~~~ 197 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVLSRR 197 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHHHHH
Confidence 789999999999999999999999999999999888754321 1 1112224566666
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC-CCCCCCCCCCCCcceeecCC--
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG-LIPEVPGLGSFEGEYMHSSK-- 160 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~-~~~~~~g~~~~~~~~~~~~~-- 160 (381)
.+.++++|+++++++.+.. . +...+ ....||.||+|||+.+ ..++++|.+. ++ +.+..+
T Consensus 198 ~~~~~~~Gv~~~~~~~v~~--------~--~~~~~------~~~~~D~vilAtGa~~~~~~~i~g~~~-~g-V~~a~~~l 259 (467)
T TIGR01318 198 REIFTAMGIEFHLNCEVGR--------D--ISLDD------LLEDYDAVFLGVGTYRSMRGGLPGEDA-PG-VLQALPFL 259 (467)
T ss_pred HHHHHHCCCEEECCCEeCC--------c--cCHHH------HHhcCCEEEEEeCCCCCCcCCCCCcCC-CC-cEEHHHHH
Confidence 6777888999888876621 0 11111 1246999999999995 4567787653 22 222110
Q ss_pred ---------C---C--CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 161 ---------Y---E--NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 161 ---------~---~--~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
. . ......+++++|+|+|.+|++.|..+.++|. +|++++|++...+|....+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e------------- 326 (467)
T TIGR01318 260 IANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRRE------------- 326 (467)
T ss_pred HHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHH-------------
Confidence 0 0 0012357999999999999999999999985 7999999874334432221
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C-e---EEE--
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N-E---VEF-- 295 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~-~---v~~-- 295 (381)
.+.+++.+|+++.+ +.++.. + . +.+
T Consensus 327 ---------------------------------------------~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~ 361 (467)
T TIGR01318 327 ---------------------------------------------VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVR 361 (467)
T ss_pred ---------------------------------------------HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEE
Confidence 11122233444433 333321 0 0 111
Q ss_pred ------------------cCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCC---CCCCCCCCcEEEEec
Q 035902 296 ------------------ENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNC---PNHWKGENGLYCAGF 353 (381)
Q Consensus 296 ------------------~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~---~~~~~~~~~ifa~Gd 353 (381)
.+.+++++|.||+++|++|+...++. . .++ ++++|++.++. ..+.++.|+||++||
T Consensus 362 ~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~-~-~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD 439 (467)
T TIGR01318 362 TALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLA-G-HGITLDSWGRIITGDVSYLPYQTTNPKIFAGGD 439 (467)
T ss_pred EEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccccc-c-cCccCCCCCCEEeCCccccCccCCCCCEEEECC
Confidence 11247899999999999999644444 3 555 67788888872 245678999999999
Q ss_pred cccccc---CccHHHHHHHHHhhhccc
Q 035902 354 SRTGLH---GISIDAKNIANDINLALT 377 (381)
Q Consensus 354 ~~~~~~---~a~~~a~~~a~~i~~~l~ 377 (381)
+.+++. .|+.+|+.+|++|+.+|.
T Consensus 440 ~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 440 AVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 988764 799999999999998774
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=221.24 Aligned_cols=264 Identities=23% Similarity=0.291 Sum_probs=196.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
..++|||+|++|..|+..++..|. +++++-++..++- .....+++.. .....+..
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~py--dr~~Ls~~~~---------------------~~~~~~a~ 131 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPY--DRARLSKFLL---------------------TVGEGLAK 131 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcc--cchhccccee---------------------eccccccc
Confidence 579999999999999999999987 7888876654331 0000000000 01122233
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
...++.+.+++++++++.|+.++... +. |.+.+| +.++|++++||||+.++.|++||.+.. .+....+.
T Consensus 132 r~~e~Yke~gIe~~~~t~v~~~D~~~--K~--l~~~~G-----e~~kys~LilATGs~~~~l~~pG~~~~--nv~~irei 200 (478)
T KOG1336|consen 132 RTPEFYKEKGIELILGTSVVKADLAS--KT--LVLGNG-----ETLKYSKLIIATGSSAKTLDIPGVELK--NVFYLREI 200 (478)
T ss_pred cChhhHhhcCceEEEcceeEEeeccc--cE--EEeCCC-----ceeecceEEEeecCccccCCCCCcccc--ceeeeccH
Confidence 33445677799999999999999876 55 888888 899999999999999999999998732 23333332
Q ss_pred CCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH-HHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 162 ENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV-FAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 162 ~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
.+.. -.....++++|+|.+|+|+|..|...+.+||++.+.+ +.+|+... ++++.
T Consensus 201 eda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~~~i~~~------------------- 260 (478)
T KOG1336|consen 201 EDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFGPSIGQF------------------- 260 (478)
T ss_pred HHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhhHHHHHH-------------------
Confidence 2211 1147789999999999999999999999999999999 77775332 33333
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC------eEEEcCCcEeeccEEE
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN------EVEFENGKIEEFEAII 307 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~------~v~~~~g~~~~~D~vi 307 (381)
+.+.+++++|+++.+ +.++..+ .|.+.+|+++++|.|+
T Consensus 261 ----------------------------------~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv 306 (478)
T KOG1336|consen 261 ----------------------------------YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVV 306 (478)
T ss_pred ----------------------------------HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEE
Confidence 345557888888887 6666553 4788999999999999
Q ss_pred EecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc
Q 035902 308 FATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
+.+|.+|++++ +. . ...+++.|.+.|+ ..++++.|||||+||++..+.
T Consensus 307 ~GiG~~p~t~~-~~-~-g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~fp~ 354 (478)
T KOG1336|consen 307 VGIGIKPNTSF-LE-K-GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATFPL 354 (478)
T ss_pred Eeecccccccc-cc-c-cceecccCCEeeh-hceeeccCCcccccceeeccc
Confidence 99999999964 43 2 2338899999999 567789999999999987643
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=210.16 Aligned_cols=188 Identities=34% Similarity=0.673 Sum_probs=132.3
Q ss_pred EEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcc---cccCCCC---CC-----CCCCCCC
Q 035902 7 VIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQF---CELPHMP---FP-----SRTPTFV 74 (381)
Q Consensus 7 vIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~-----~~~~~~~ 74 (381)
+||||||+|+++|..|.++|.+ ++|||+++.+|+.|... +....+..+..+ +.++.+. +. .....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 99999999999999742 111111222211 1111111 00 0123467
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC--CCCCCCCCCCCCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE--NGLIPEVPGLGSFE 152 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~--~~~~~~~~g~~~~~ 152 (381)
+..++.+|++++++++++.++++++|.++..++ +.|.|++.++ +.+++|+||+|||. .|..|.++| ..+
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~~-----~~~~a~~VVlAtG~~~~p~~p~~~g-~~~- 150 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRDG-----RTIRADRVVLATGHYSHPRIPDIPG-SAF- 150 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETTS------EEEEEEEEE---SSCSB---S-TT-GGC-
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEec-----ceeeeeeEEEeeeccCCCCcccccc-ccc-
Confidence 889999999999999999999999999999986 4599999886 78999999999997 488888888 222
Q ss_pred cceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcc
Q 035902 153 GEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVH 204 (381)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~ 204 (381)
...+|+.++.+...+.+++++|||+|.||+|++..|++.|++|++++|++.|
T Consensus 151 ~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 151 RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 2578998888878888999999999999999999999999999999999854
|
... |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=234.28 Aligned_cols=275 Identities=16% Similarity=0.209 Sum_probs=185.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||+|+++|..|++.|++|+|||+.+.+||.|... .+. +....++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip~---------~~l~~~~~~~ 365 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IPP---------FKLDKTVLSQ 365 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CCc---------ccCCHHHHHH
Confidence 4789999999999999999999999999999999888865432 111 1112355555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeec---
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHS--- 158 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~--- 158 (381)
..+.++.+|+++++++++.. . +...+ ....||.|++|||+. +..+.++|.+. .| ++..
T Consensus 366 ~~~~~~~~Gv~~~~~~~v~~--------~--~~~~~------l~~~~DaV~latGa~~~~~~~i~g~~~-~g-v~~a~~~ 427 (639)
T PRK12809 366 RREIFTAMGIDFHLNCEIGR--------D--ITFSD------LTSEYDAVFIGVGTYGMMRADLPHEDA-PG-VIQALPF 427 (639)
T ss_pred HHHHHHHCCeEEEcCCccCC--------c--CCHHH------HHhcCCEEEEeCCCCCCCCCCCCCCcc-CC-cEeHHHH
Confidence 56677788999888876521 0 11111 124689999999998 45566777542 23 2211
Q ss_pred --------CCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 159 --------SKYEN-----GGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 159 --------~~~~~-----~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
..... .....+++++|+|+|.+|++.|..+.++|. +|++++|++....|....++.
T Consensus 428 l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~---------- 497 (639)
T PRK12809 428 LTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV---------- 497 (639)
T ss_pred HHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH----------
Confidence 00100 112357999999999999999999988885 799999987332333222111
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC---C---eE---
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR---N---EV--- 293 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~---~---~v--- 293 (381)
..++.+++++.. +.++.. + ++
T Consensus 498 ------------------------------------------------~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~ 529 (639)
T PRK12809 498 ------------------------------------------------NAREEGVEFQFNVQPQYIACDEDGRLTAVGLI 529 (639)
T ss_pred ------------------------------------------------HHHHcCCeEEeccCCEEEEECCCCeEEEEEEE
Confidence 112223333332 333321 0 01
Q ss_pred ---------------EE--cCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCC---CCCCCCCcEEEEe
Q 035902 294 ---------------EF--ENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCP---NHWKGENGLYCAG 352 (381)
Q Consensus 294 ---------------~~--~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~ifa~G 352 (381)
.. .+..++++|.||+|+|+.|+...++. . .++ ++++|++.++.. .++|+.|+|||+|
T Consensus 530 ~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~-~-~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~G 607 (639)
T PRK12809 530 RTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQ-G-SGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGG 607 (639)
T ss_pred EEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccccc-c-cCcccCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence 11 11237899999999999998644554 4 566 778898888731 3568999999999
Q ss_pred ccccccc---CccHHHHHHHHHhhhccccC
Q 035902 353 FSRTGLH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 353 d~~~~~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
|+..+.. .|+.+|+.+|++|+.+|++.
T Consensus 608 D~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 608 DAVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9988765 79999999999999998765
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=222.85 Aligned_cols=272 Identities=20% Similarity=0.320 Sum_probs=185.9
Q ss_pred HHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HHHHHHH-HHHHHHHhCC
Q 035902 17 ATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RISFINY-VDNYVSQMGI 92 (381)
Q Consensus 17 ~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 92 (381)
+||..|++. ..+|+|||+++.+... . +.++. ....... ..++..+ .+++.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~--~--------------~~l~~-----~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA--N--------------CGLPY-----VIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE--c--------------CCCCe-----EeccccCCHHHcccCCHHHHHHhcCC
Confidence 478888876 4689999999843210 0 00000 0011111 2333333 2345577899
Q ss_pred ccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE--eCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCC------
Q 035902 93 NPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV--ARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENG------ 164 (381)
Q Consensus 93 ~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~--~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~------ 164 (381)
+++++++|++++.++ +. +.+.++..+ ..+. ||+||+|||+.|..|.+||++. ..++......+.
T Consensus 60 ~~~~~~~V~~id~~~--~~--v~~~~~~~~--~~~~~~yd~lIiATG~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~~~ 131 (427)
T TIGR03385 60 DVKTNHEVIEVNDER--QT--VVVRNNKTN--ETYEESYDYLILSPGASPIVPNIEGINL--DIVFTLRNLEDTDAIKQY 131 (427)
T ss_pred eEEecCEEEEEECCC--CE--EEEEECCCC--CEEecCCCEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHH
Confidence 988899999998755 44 444432111 3466 9999999999999999998752 123333222111
Q ss_pred -CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce-echhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 165 -GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV-LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 165 -~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .+ .+..+.++...
T Consensus 132 l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~~~~~~~~~~~~~-------------------------- 184 (427)
T TIGR03385 132 IDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE-RILNKLFDEEMNQI-------------------------- 184 (427)
T ss_pred HhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccCccccCHHHHHH--------------------------
Confidence 01357899999999999999999999999999999987 33 23222222211
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe--EEEcCCcEeeccEEEEecCCCCCcch
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE--VEFENGKIEEFEAIIFATGYKSTVRN 318 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~--v~~~~g~~~~~D~vi~a~G~~p~~~~ 318 (381)
+.+.+++.+|+++.+ +++++.++ +.+.+|+++++|.+++|+|.+|+.+.
T Consensus 185 ---------------------------~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 237 (427)
T TIGR03385 185 ---------------------------VEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSEL 237 (427)
T ss_pred ---------------------------HHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHH
Confidence 234456678888876 88887653 36678889999999999999999863
Q ss_pred hccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc-------------ccCccHHHHHHHHHhhhc
Q 035902 319 WLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-------------LHGISIDAKNIANDINLA 375 (381)
Q Consensus 319 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-------------~~~a~~~a~~~a~~i~~~ 375 (381)
+. . .++ ++++|++.+| +.++++.|+|||+|||... ...|..||+.+|+||.+.
T Consensus 238 -l~-~-~gl~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 238 -AK-D-SGLKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred -HH-h-cCcccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 43 3 565 6778999998 4567889999999999752 128889999999999864
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=233.00 Aligned_cols=274 Identities=16% Similarity=0.196 Sum_probs=176.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+|||+|++|+++|..|+++|.+|+|+|+.+..||.+... . +.+....++...
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i---------~~~~~~~~~~~~ 338 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------I---------PSYRLPDEALDK 338 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------C---------CcccCCHHHHHH
Confidence 3789999999999999999999999999999998777643211 1 111112344444
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..+.++++++++++++.|.. + +..+. ....||+||+|||+. ++.++++|.+. .+ ++...++
T Consensus 339 ~~~~~~~~gv~~~~~~~v~~-~---------~~~~~------~~~~yD~vilAtGa~~~r~l~i~G~~~-~g-v~~a~~~ 400 (604)
T PRK13984 339 DIAFIEALGVKIHLNTRVGK-D---------IPLEE------LREKHDAVFLSTGFTLGRSTRIPGTDH-PD-VIQALPL 400 (604)
T ss_pred HHHHHHHCCcEEECCCEeCC-c---------CCHHH------HHhcCCEEEEEcCcCCCccCCCCCcCC-cC-eEeHHHH
Confidence 45667778998888877621 0 11111 235799999999998 67788888653 22 2222221
Q ss_pred CC---------C-CCCCCCeEEEEcCCCCHHHHHHHHhhCCC------eeEEEEec-CcceechhhHHHHHHHHhhCcHH
Q 035902 162 EN---------G-GKFIGKNVLVVGCGNSGMEIAYDLSSCGA------CTSIVVRG-PVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 162 ~~---------~-~~~~~~~v~viG~G~~~~e~a~~l~~~g~------~v~~i~r~-~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
.. . ....+++++|||||.+|+|+|..+.+++. +|+++... ....+|....++..
T Consensus 401 l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~--------- 471 (604)
T PRK13984 401 LREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEE--------- 471 (604)
T ss_pred HHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHH---------
Confidence 11 0 11247899999999999999999998753 67776432 11122222111100
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C---eEE---
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N---EVE--- 294 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~---~v~--- 294 (381)
+.+.+|+++.+ +.++.. + ++.
T Consensus 472 -------------------------------------------------~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~ 502 (604)
T PRK13984 472 -------------------------------------------------GLEEGVVIYPGWGPMEVVIENDKVKGVKFKK 502 (604)
T ss_pred -------------------------------------------------HHHcCCEEEeCCCCEEEEccCCEEEEEEEEE
Confidence 01122222222 111110 0 011
Q ss_pred --------------E--cCCcEeeccEEEEecCCCCCcchhccccC-CcccccCCCCCCCCCCCCCCCCcEEEEeccccc
Q 035902 295 --------------F--ENGKIEEFEAIIFATGYKSTVRNWLKRAD-KDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357 (381)
Q Consensus 295 --------------~--~~g~~~~~D~vi~a~G~~p~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~ 357 (381)
. .+++++++|.||+|+|++|+++.+.. +. .++-.++|.+.+| +.++|+.|+|||+||++.+
T Consensus 503 ~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~-~~~~~l~~~~G~i~vd-~~~~Ts~~gVfAaGD~~~~ 580 (604)
T PRK13984 503 CVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPE-ELKSKLEFVRGRILTN-EYGQTSIPWLFAGGDIVHG 580 (604)
T ss_pred EeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhh-hhccCccccCCeEEeC-CCCccCCCCEEEecCcCCc
Confidence 0 12347999999999999999865432 21 1232246888888 5677999999999999987
Q ss_pred cc--CccHHHHHHHHHhhhcccc
Q 035902 358 LH--GISIDAKNIANDINLALTD 378 (381)
Q Consensus 358 ~~--~a~~~a~~~a~~i~~~l~~ 378 (381)
+. .|+.+|+.+|++|+.+|..
T Consensus 581 ~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 581 PDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 65 8999999999999998863
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=214.94 Aligned_cols=322 Identities=17% Similarity=0.151 Sum_probs=182.8
Q ss_pred cccEEEECCCHHHHHHHHHHHh--CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNN--LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~--~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
.++|+||||||||++||..|++ .|.+|+|||+.+.++|..+.... +.++....+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v~ 82 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNVT 82 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHHH
Confidence 3789999999999999999987 69999999999988875443210 2233344566
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC-CCCCCCCCCCCCcceeecC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG-LIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~-~~~~~~g~~~~~~~~~~~~ 159 (381)
..+.+.++..++.++.+..+. .. +.+.+. ...||.||+|||+.+ ..+.+||.+. .+ ++...
T Consensus 83 ~~~~~~~~~~~v~~~~nv~vg--------~d--vtl~~L------~~~yDaVIlAtGa~~~~~l~IpG~d~-~g-V~~a~ 144 (491)
T PLN02852 83 NQFSRVATDDRVSFFGNVTLG--------RD--VSLSEL------RDLYHVVVLAYGAESDRRLGIPGEDL-PG-VLSAR 144 (491)
T ss_pred HHHHHHHHHCCeEEEcCEEEC--------cc--ccHHHH------hhhCCEEEEecCCCCCCCCCCCCCCC-CC-eEEHH
Confidence 666777777777776665441 11 333321 246999999999984 6778888653 22 33322
Q ss_pred CCC----------CC--CCCCCCeEEEEcCCCCHHHHHHHHhhC--------------------C-CeeEEEEecCccee
Q 035902 160 KYE----------NG--GKFIGKNVLVVGCGNSGMEIAYDLSSC--------------------G-ACTSIVVRGPVHVL 206 (381)
Q Consensus 160 ~~~----------~~--~~~~~~~v~viG~G~~~~e~a~~l~~~--------------------g-~~v~~i~r~~~~~~ 206 (381)
++. .. ....+++++|||+|++|+|+|..|.+. + .+|+++.|+...-.
T Consensus 145 ~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~ 224 (491)
T PLN02852 145 EFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQA 224 (491)
T ss_pred HHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhC
Confidence 210 00 112579999999999999999998875 5 46999999983222
Q ss_pred chhhHHHHHHHHh------hCcHHH---------------HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCcc
Q 035902 207 TREIVFAGMLLLK------FLPCKL---------------VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPT 265 (381)
Q Consensus 207 p~~~~~~~~~~~~------~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (381)
+....++.....- .-+..+ ..+....+.+....... . ...++.-..+.+...|.
T Consensus 225 ~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~---~--~~~~~~~v~~~f~~sP~ 299 (491)
T PLN02852 225 ACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKC---A--PSGGQRELHFVFFRNPT 299 (491)
T ss_pred CCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhccc---c--cCCCCceEEEEccCCCe
Confidence 2222222211100 000000 00001111100000000 0 00000000111111110
Q ss_pred ccchhhhhhc--C--CC---eEEccC-cceEe--CCeEEEcCC--cEeeccEEEEecCCC--CCcchhccccCCcc-ccc
Q 035902 266 IDVGAMDKIR--K--GE---IQVFPS-ITSIN--RNEVEFENG--KIEEFEAIIFATGYK--STVRNWLKRADKDF-FDE 330 (381)
Q Consensus 266 ~~~~~~~~~~--~--~~---v~~~~~-v~~v~--~~~v~~~~g--~~~~~D~vi~a~G~~--p~~~~~~~~~~~~~-~~~ 330 (381)
+.+. + ++ +++... +..-+ +......+| ++++||.||.++|++ |.....+. ...++ .+.
T Consensus 300 ------ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~gv~~n~ 372 (491)
T PLN02852 300 ------RFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRGVVPNV 372 (491)
T ss_pred ------EEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccc-cCcCeeECC
Confidence 0000 0 01 111100 00000 000001123 368999999999998 44432233 32444 677
Q ss_pred CCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 331 YGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 331 ~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+|++.++ +...|+.||||++||+..++. .++.+|..++++|..++..
T Consensus 373 ~G~V~~d-~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 373 HGRVLSS-ASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CceEEeC-CCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 8999887 345688999999999998765 8999999999999998754
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=201.18 Aligned_cols=285 Identities=20% Similarity=0.230 Sum_probs=209.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
|||+||||||||.++|.+.+++|++.-++-. .+||.... .|.. -++...+ .....++...+
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvld----T~~I------ENfIsv~-------~teGpkl~~al 272 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLD----TMGI------ENFISVP-------ETEGPKLAAAL 272 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeecc----ccch------hheeccc-------cccchHHHHHH
Confidence 8999999999999999999999998766542 34442111 0100 0111111 23456888888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCC-CCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDEN-AKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
++-.++|.+++..-.+..++.+... .+...|++.+| -.++++.+|+|||++=+-.++||.++|..+-+.+|..+
T Consensus 273 e~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG-----avLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHC 347 (520)
T COG3634 273 EAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG-----AVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHC 347 (520)
T ss_pred HHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC-----ceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCC
Confidence 8889999999877777777776432 24677999988 78999999999999966668899988887788999999
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+...+.+|+++|||||++|+|+|..|+-.-..||++.-.+ .... +.+
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~-----eLkA---------------D~V------------- 394 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP-----ELKA---------------DAV------------- 394 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch-----hhhh---------------HHH-------------
Confidence 9999999999999999999999999999888899986444 1110 000
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeCC-----eEEEc---CC--cEeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINRN-----EVEFE---NG--KIEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~~-----~v~~~---~g--~~~~~D~vi~a 309 (381)
+.+.+++ .|++++++ .+++.++ ++... +| ..++-+-|++-
T Consensus 395 ---------------------------Lq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVq 447 (520)
T COG3634 395 ---------------------------LQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQ 447 (520)
T ss_pred ---------------------------HHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEE
Confidence 1233333 57888887 6777665 33333 23 35678889999
Q ss_pred cCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcc
Q 035902 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLAL 376 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l 376 (381)
+|.-||+ .|++ + .--+++.|.+.+| ....|+.|+|||+|||...+. .++.+|..++-....+|
T Consensus 448 IGL~PNT-~WLk-g-~vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 448 IGLLPNT-EWLK-G-AVELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred EecccCh-hHhh-c-hhhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhh
Confidence 9999999 6888 5 3228899999999 566799999999999987655 55555555554444433
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-27 Score=220.16 Aligned_cols=306 Identities=19% Similarity=0.185 Sum_probs=179.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+++|..|++.|.+|+|||+.+.+||.... .. +.+....++....
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~---------------gi---------p~~~~~~~~~~~~ 199 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY---------------GI---------PNMKLDKAIVDRR 199 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec---------------cC---------CCccCCHHHHHHH
Confidence 68999999999999999999999999999999877764321 11 1111223455555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCC--
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSK-- 160 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~-- 160 (381)
.+.++++|+++++++.+. .+ +.. +. ....||.||+|||+. |..+.++|.+. .+ +....+
T Consensus 200 ~~~~~~~Gv~~~~~~~v~-~~---------~~~-~~-----~~~~~d~VilAtGa~~~~~l~i~G~~~-~g-V~~~~~~l 261 (485)
T TIGR01317 200 IDLLSAEGIDFVTNTEIG-VD---------ISA-DE-----LKEQFDAVVLAGGATKPRDLPIPGREL-KG-IHYAMEFL 261 (485)
T ss_pred HHHHHhCCCEEECCCEeC-Cc---------cCH-HH-----HHhhCCEEEEccCCCCCCcCCCCCcCC-CC-cEeHHHHH
Confidence 566677899988887763 11 111 10 235699999999998 88888988653 32 221110
Q ss_pred ------CC-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 161 ------YE-------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 161 ------~~-------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
.. ......+++++|||+|.+|+|+|..+.+++ .+|+++.+.+ ........+ ..++.+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~-~~~~~~~~~------~~~~~~~~ 334 (485)
T TIGR01317 262 PSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP-KPPEARAKD------NPWPEWPR 334 (485)
T ss_pred HHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC-CChhhcccc------cCCCccch
Confidence 00 011246899999999999999988888877 4799998876 222110000 00000000
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhc-C--CCeEEcc-C-cc-eEeCCe---EEE-c
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR-K--GEIQVFP-S-IT-SINRNE---VEF-E 296 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~-~-v~-~v~~~~---v~~-~ 296 (381)
..-....... .....++. .. .+... ...+. + +.+.-+. . ++ ..++++ ... .
T Consensus 335 ~~e~~~a~~e---~~~~~gv~-----~~----~~~~~-------~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~ 395 (485)
T TIGR01317 335 VYRVDYAHEE---AAAHYGRD-----PR----EYSIL-------TKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIP 395 (485)
T ss_pred hhhhHHHHHh---hhhhcCcc-----ce----EEecC-------cEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecC
Confidence 0000000000 00000000 00 00000 00000 0 0111000 0 00 000011 111 1
Q ss_pred -CCcEeeccEEEEecCCC-CCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHH
Q 035902 297 -NGKIEEFEAIIFATGYK-STVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIAN 370 (381)
Q Consensus 297 -~g~~~~~D~vi~a~G~~-p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~ 370 (381)
+.+++++|.||+|+|.. |+.+ ++. . .++ ++++|++.++...++|+.|||||+||++++.. .|+.+|+.+|.
T Consensus 396 g~~~~i~~D~Vi~AiG~~~p~~~-~~~-~-~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~ 472 (485)
T TIGR01317 396 GSEEVFEADLVLLAMGFVGPEQI-LLD-D-FGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAA 472 (485)
T ss_pred CceEEEECCEEEEccCcCCCccc-ccc-c-cCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHH
Confidence 12379999999999996 7774 444 3 555 57788886654567899999999999987654 89999999999
Q ss_pred HhhhccccCC
Q 035902 371 DINLALTDHQ 380 (381)
Q Consensus 371 ~i~~~l~~~~ 380 (381)
+|+.+|.+.+
T Consensus 473 ~i~~~L~g~~ 482 (485)
T TIGR01317 473 AVDRYLMGSS 482 (485)
T ss_pred HHHHHHhcCC
Confidence 9999997654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=192.95 Aligned_cols=315 Identities=17% Similarity=0.193 Sum_probs=203.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC--CCCCCCcCCC-------CCCCeeeecCCcc----ccc--CCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE--DCSASLWKKR-------AYDRMKLHLAKQF----CEL--PHMPFP 67 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~--~~~g~~~~~~-------~~~~~~~~~~~~~----~~~--~~~~~~ 67 (381)
+||.+|||||.+|++||.+++..|.+|.++|-- .-.|..|-.. +.++-.++...-. ... ..+..+
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~~ 98 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNVD 98 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 489999999999999999999999999999932 2234455431 2222111111100 000 011111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE----EEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 68 SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW----IIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~----~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+. ..-+....+.+..+.-.+..+--.+..-+-..+...+..+.| .+...+. .++.+.+++++++||||.+|+.|
T Consensus 99 e~-~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~-~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716|consen 99 EQ-KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNK-KGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred cc-cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecC-CCceEEeecceEEEEecCCCCCC
Confidence 10 112334556666666655543222211111112221111222 1333222 22457899999999999999999
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++||..++ .+++.+.+.... .+.+.+|||+|+.|.|+|.+|+-.|.+|+++.|+ -++..++.+++..+.+++.
T Consensus 177 ~IpG~~Ey---~ITSDDlFsl~~-~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS--I~LrGFDqdmae~v~~~m~- 249 (503)
T KOG4716|consen 177 DIPGAKEY---GITSDDLFSLPY-EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS--ILLRGFDQDMAELVAEHME- 249 (503)
T ss_pred CCCCceee---eecccccccccC-CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE--eecccccHHHHHHHHHHHH-
Confidence 99997765 477777766544 6888899999999999999999999999999998 5778888888888877662
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCCeEE--E---c-
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRNEVE--F---E- 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~~v~--~---~- 296 (381)
..|+++.+. +++- |+.++..++. . +
T Consensus 250 -------------------~~Gikf~~~-----------------------------~vp~~Veq~~~g~l~v~~k~t~t 281 (503)
T KOG4716|consen 250 -------------------ERGIKFLRK-----------------------------TVPERVEQIDDGKLRVFYKNTNT 281 (503)
T ss_pred -------------------HhCCceeec-----------------------------ccceeeeeccCCcEEEEeecccc
Confidence 333321100 0111 3444443321 1 1
Q ss_pred -CCcEeeccEEEEecCCCCCcchhccccCCcc-cc-cCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHH
Q 035902 297 -NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FD-EYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIA 369 (381)
Q Consensus 297 -~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a 369 (381)
++-+.++|.|+||+|+++.+..+.. ++.|+ .+ ..|-+.++ ....++.|+|||+||+.-+.. .|+..|+.+|
T Consensus 282 ~~~~~~~ydTVl~AiGR~~~~~~l~L-~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa 359 (503)
T KOG4716|consen 282 GEEGEEEYDTVLWAIGRKALTDDLNL-DNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLA 359 (503)
T ss_pred cccccchhhhhhhhhccccchhhcCC-CccceeecccCCccccC-hHHhcCCCceEEecceecCCcccchhhhhhchHHH
Confidence 1225679999999999999987766 76787 43 56778887 466799999999999987643 9999999999
Q ss_pred HHhhhcc
Q 035902 370 NDINLAL 376 (381)
Q Consensus 370 ~~i~~~l 376 (381)
+.+..--
T Consensus 360 ~Rlf~gs 366 (503)
T KOG4716|consen 360 RRLFAGS 366 (503)
T ss_pred HHHhcCc
Confidence 9987643
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=224.60 Aligned_cols=273 Identities=21% Similarity=0.271 Sum_probs=180.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||+|+++|..|++.|.+|+++|+.+.+||.+... . +.+.-..++.+.-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~~ 193 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------I---------PAYRLPREVLDAE 193 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------C---------CCccCCHHHHHHH
Confidence 689999999999999999999999999999999888754321 1 1111123444444
Q ss_pred HHHHHHhCCccccccEE-EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 84 DNYVSQMGINPRYHRSV-ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
.+.+.++|+++.+++.+ .++..+ . ....||+||+|+|+. +....+++.+. .+ +.....+
T Consensus 194 l~~~~~~Gv~~~~~~~~~~~~~~~-----------~------~~~~~D~Vi~AtG~~~~~~~~i~g~~~-~g-v~~~~~~ 254 (564)
T PRK12771 194 IQRILDLGVEVRLGVRVGEDITLE-----------Q------LEGEFDAVFVAIGAQLGKRLPIPGEDA-AG-VLDAVDF 254 (564)
T ss_pred HHHHHHCCCEEEeCCEECCcCCHH-----------H------HHhhCCEEEEeeCCCCCCcCCCCCCcc-CC-cEEHHHH
Confidence 45566678887776654 221110 0 112489999999998 44556666432 22 2221111
Q ss_pred C-----CCCCCCCCeEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 162 E-----NGGKFIGKNVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 162 ~-----~~~~~~~~~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
. ......+++++|+|+|.+|++.+..+.+++ .+|+++.|.+...++.....
T Consensus 255 l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~----------------------- 311 (564)
T PRK12771 255 LRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEE----------------------- 311 (564)
T ss_pred HHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHH-----------------------
Confidence 1 112345899999999999999999999988 67999998873222221111
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe----------EEE----c---
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE----------VEF----E--- 296 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~----------v~~----~--- 296 (381)
.+...+.+++++.. +.++..+. +.+ +
T Consensus 312 -----------------------------------~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~ 356 (564)
T PRK12771 312 -----------------------------------IEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGR 356 (564)
T ss_pred -----------------------------------HHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCC
Confidence 11112234444433 44443210 111 1
Q ss_pred ----CC--cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 297 ----NG--KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 297 ----~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
+| .++++|.||+|+|+.|+.. ++. +..++.+++|++.+|...+.++.||||++||+..++. .|+.+|+.
T Consensus 357 ~~~~~g~~~~i~~D~Vi~A~G~~p~~~-~~~-~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~ 434 (564)
T PRK12771 357 PSPVTGEEETLEADLVVLAIGQDIDSA-GLE-SVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKK 434 (564)
T ss_pred eeecCCceEEEECCEEEECcCCCCchh-hhh-hccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHH
Confidence 22 4799999999999999875 343 3234446789999984466789999999999987654 89999999
Q ss_pred HHHHhhhccccC
Q 035902 368 IANDINLALTDH 379 (381)
Q Consensus 368 ~a~~i~~~l~~~ 379 (381)
+|.+|+..|...
T Consensus 435 aA~~i~~~L~g~ 446 (564)
T PRK12771 435 AARNIDAFLGGE 446 (564)
T ss_pred HHHHHHHHHcCC
Confidence 999999988654
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=225.21 Aligned_cols=281 Identities=18% Similarity=0.163 Sum_probs=187.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+||||||||++||..+++.|.+|+|||+++.+||.+.... . ..+ ..+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---------------~------~~~-g~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---------------E------TID-GKPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---------------c------ccC-CccHHHHHHH
Confidence 47999999999999999999999999999999998887553210 0 001 1223344444
Q ss_pred HHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEe--------ec-CCCceEEEEeCEEEEccCCCCCCCCCCCCCCCC
Q 035902 83 VDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAK--------NT-ALDAYEEYVARYLVVATGENGLIPEVPGLGSFE 152 (381)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~--------~~-~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~ 152 (381)
+.+.++.+ ++.++.+++|.++.... ....+... .+ .......++||.||||||+.+..|+++|.+. +
T Consensus 221 ~~~~l~~~~~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~-p 297 (985)
T TIGR01372 221 TVAELTAMPEVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR-P 297 (985)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC-C
Confidence 44445445 58888889898875321 11111100 00 0011236899999999999999888988754 3
Q ss_pred cceeecC---CCCCC-CCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 153 GEYMHSS---KYENG-GKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 153 ~~~~~~~---~~~~~-~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
+ ++... .+... ....+++++|+|+|.+|+|+|..|++.|. .|+++.+++ .+.+
T Consensus 298 g-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~-~~~~-------------------- 355 (985)
T TIGR01372 298 G-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA-DVSP-------------------- 355 (985)
T ss_pred C-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc-chhH--------------------
Confidence 3 22221 11111 12357999999999999999999999995 578887665 2111
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEc----C
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFE----N 297 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~----~ 297 (381)
.+.+.+++.+|+++.+ +.++.++ +|.+. +
T Consensus 356 -----------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~ 394 (985)
T TIGR01372 356 -----------------------------------------EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGA 394 (985)
T ss_pred -----------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCc
Confidence 0134456678888877 7777654 34554 4
Q ss_pred CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc--CccHHHHHHHHHhhh
Q 035902 298 GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH--GISIDAKNIANDINL 374 (381)
Q Consensus 298 g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~--~a~~~a~~~a~~i~~ 374 (381)
+++++||.|++++|++|++..... .+. +..+.......+ .++.|+||++||+.+... .|..+|..+|.+|+.
T Consensus 395 ~~~i~~D~V~va~G~~Pnt~L~~~---lg~~~~~~~~~~~~~~--~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~ 469 (985)
T TIGR01372 395 GQRLEADALAVSGGWTPVVHLFSQ---RGGKLAWDAAIAAFLP--GDAVQGCILAGAANGLFGLAAALADGAAAGAAAAR 469 (985)
T ss_pred eEEEECCEEEEcCCcCchhHHHHh---cCCCeeeccccCceec--CCCCCCeEEeeccCCccCHHHHHHHHHHHHHHHHH
Confidence 568999999999999999965433 222 221111111101 155799999999987655 899999999999987
Q ss_pred cc
Q 035902 375 AL 376 (381)
Q Consensus 375 ~l 376 (381)
.+
T Consensus 470 ~l 471 (985)
T TIGR01372 470 AA 471 (985)
T ss_pred Hc
Confidence 66
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=205.51 Aligned_cols=285 Identities=19% Similarity=0.197 Sum_probs=203.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
|...+++|||.|.+|..+..++++. -++++++...+... |+...++. .++.-.+.+
T Consensus 1 m~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~--------------vl~~~~~~e 59 (793)
T COG1251 1 MKKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSS--------------VLAGEKTAE 59 (793)
T ss_pred CCceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeecc--------------ccCCCccHH
Confidence 6668899999999999999999984 45899998877543 22222111 111112233
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
++.-.-..+.++.+++++.+..|+.++.+. +. |.++.+ ..+.||.||+||||.|+++++||...+. ++.
T Consensus 60 di~l~~~dwy~~~~i~L~~~~~v~~idr~~--k~--V~t~~g-----~~~~YDkLilATGS~pfi~PiPG~~~~~--v~~ 128 (793)
T COG1251 60 DISLNRNDWYEENGITLYTGEKVIQIDRAN--KV--VTTDAG-----RTVSYDKLIIATGSYPFILPIPGSDLPG--VFV 128 (793)
T ss_pred HHhccchhhHHHcCcEEEcCCeeEEeccCc--ce--EEccCC-----cEeecceeEEecCccccccCCCCCCCCC--eeE
Confidence 444444566777899999999999999876 55 888887 8999999999999999999999987532 333
Q ss_pred cCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceec-hhhHHHHHHHHhhCcHHHHHHHHH
Q 035902 158 SSKYENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLT-REIVFAGMLLLKFLPCKLVDFIVV 231 (381)
Q Consensus 158 ~~~~~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p-~~~~~~~~~~~~~l~~~~~~~~~~ 231 (381)
..++.+.. ....++.+|||||..|+|+|..|...|.++++++-.+ ++.- +.+..-+..
T Consensus 129 ~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD~~ag~l--------------- 192 (793)
T COG1251 129 YRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLDRTAGRL--------------- 192 (793)
T ss_pred EecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhhhHHHHH---------------
Confidence 33332211 1245668999999999999999999999999997666 2211 111111111
Q ss_pred HHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC----CeEEEcCCcEeeccE
Q 035902 232 MLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR----NEVEFENGKIEEFEA 305 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~----~~v~~~~g~~~~~D~ 305 (381)
+.+.+.+.+++++.+ ..++.+ .++.+.||+.+++|.
T Consensus 193 --------------------------------------L~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~ 234 (793)
T COG1251 193 --------------------------------------LRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADL 234 (793)
T ss_pred --------------------------------------HHHHHHhhcceeecccchhhhhcCcceeeEeecCCCccccee
Confidence 234455666666665 333332 378899999999999
Q ss_pred EEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-------cCccHHHHHHHHHhhhccc
Q 035902 306 IIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------HGISIDAKNIANDINLALT 377 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------~~a~~~a~~~a~~i~~~l~ 377 (381)
|++|+|++||... .. . .|+ +++ | +.+| ..++|+.|+|||+|.|+.-. .-+..||+.+|+++.....
T Consensus 235 VV~a~GIrPn~el-a~-~-aGlavnr-G-Ivvn-d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 235 VVMAVGIRPNDEL-AK-E-AGLAVNR-G-IVVN-DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred EEEecccccccHh-HH-h-cCcCcCC-C-eeec-ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 9999999999853 33 2 777 554 6 5555 38899999999999996431 2778999999999988654
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=190.96 Aligned_cols=291 Identities=15% Similarity=0.110 Sum_probs=194.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+++|+|+|+|.+|++++..|-..-++|++|++...+--+| + .|...-+.....-+.+.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTP---------------------L-LpS~~vGTve~rSIvEP 112 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTP---------------------L-LPSTTVGTVELRSIVEP 112 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceEEee---------------------c-cCCccccceeehhhhhh
Confidence 4789999999999999999998899999999886322111 1 00010112223345666
Q ss_pred HHHHHHHhCCc-cccccEEEEEEEeCCCCeEEEEEeec---CCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 83 VDNYVSQMGIN-PRYHRSVESASYDENAKAWIIVAKNT---ALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~v~~~~~---~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
+...+++.+.. ..+..+..+++++. +. |++... ....+..+.|||||+|+|+.++.+++||..+........
T Consensus 113 Ir~i~r~k~~~~~y~eAec~~iDp~~--k~--V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv 188 (491)
T KOG2495|consen 113 IRAIARKKNGEVKYLEAECTKIDPDN--KK--VHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEV 188 (491)
T ss_pred HHHHhhccCCCceEEecccEeecccc--cE--EEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhh
Confidence 66666654323 24556677777765 44 443321 113456799999999999999999999987642111111
Q ss_pred ---CCC-------------CCCCC---CCCCeEEEEcCCCCHHHHHHHHhhC--------------CCeeEEEEecCcce
Q 035902 159 ---SKY-------------ENGGK---FIGKNVLVVGCGNSGMEIAYDLSSC--------------GACTSIVVRGPVHV 205 (381)
Q Consensus 159 ---~~~-------------~~~~~---~~~~~v~viG~G~~~~e~a~~l~~~--------------g~~v~~i~r~~~~~ 205 (381)
.++ ....+ ..--+++|||||++|+|+|.+|+.. -.+||++...+ .+
T Consensus 189 ~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d-~i 267 (491)
T KOG2495|consen 189 EDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD-HI 267 (491)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch-hH
Confidence 000 00011 1223589999999999999999862 24789999888 77
Q ss_pred echhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-
Q 035902 206 LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS- 284 (381)
Q Consensus 206 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 284 (381)
++.++..+..++.+.+ .+.+|.+..+
T Consensus 268 L~mFdkrl~~yae~~f-----------------------------------------------------~~~~I~~~~~t 294 (491)
T KOG2495|consen 268 LNMFDKRLVEYAENQF-----------------------------------------------------VRDGIDLDTGT 294 (491)
T ss_pred HHHHHHHHHHHHHHHh-----------------------------------------------------hhccceeeccc
Confidence 7777766665554443 5667777777
Q ss_pred -cceEeCCeEEEcCC----cEeeccEEEEecCCCCCcchhccccCCcccccCC--CCCCCCCCCCCCCCcEEEEeccccc
Q 035902 285 -ITSINRNEVEFENG----KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYG--MPKRNCPNHWKGENGLYCAGFSRTG 357 (381)
Q Consensus 285 -v~~v~~~~v~~~~g----~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ifa~Gd~~~~ 357 (381)
|..++++.+....+ ++++.-.++|+||..|-+ +.. ....-+++.| .+.+|.-....+.+||||+|||+.-
T Consensus 295 ~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k-~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~ 371 (491)
T KOG2495|consen 295 MVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIK-DLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQ 371 (491)
T ss_pred EEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhh-hHhhcCCccCceeeeeeceeeccCcCceEEecccccc
Confidence 88888887766544 689999999999999875 222 2111245555 5667733344789999999999832
Q ss_pred c------cCccHHHHHHHHHhhhcc
Q 035902 358 L------HGISIDAKNIANDINLAL 376 (381)
Q Consensus 358 ~------~~a~~~a~~~a~~i~~~l 376 (381)
. +.|..||.++|+++....
T Consensus 372 ~~~~~tAQVA~QqG~yLAk~fn~m~ 396 (491)
T KOG2495|consen 372 RGLKPTAQVAEQQGAYLAKNFNKMG 396 (491)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHh
Confidence 1 289999999999987543
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-25 Score=198.25 Aligned_cols=220 Identities=25% Similarity=0.316 Sum_probs=135.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCCCC-CCCeeeecC--CcccccCCCCCCCCC--------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWKKRA-YDRMKLHLA--KQFCELPHMPFPSRT-------- 70 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~-------- 70 (381)
.+|+++||.||++++.|..|.+.+ .++.++|+.+... |+..+ .+...+..+ ++.........+..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~--Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS--WHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC--cCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 489999999999999999999986 8999999887543 66543 223222211 221111111111000
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCC--CeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 71 ---------PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENA--KAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 71 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+++.++.+|+++.+++++..++++++|++|.+.... ..|.|.+.+ ..+....+.|+.||+|+|..
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQ 158 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----E
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCC
Confidence 135789999999999999998669999999999987643 258898865 33345789999999999988
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecCcceechhhHHHHH
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGG--KFIGKNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGPVHVLTREIVFAGM 215 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~~~~~p~~~~~~~~ 215 (381)
|.+|...........++|+.++.... ....++|+|||||.||+|++..|.+.+. +|+|+.|++ .+.|.++.++.
T Consensus 159 P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~-~~~~~d~s~f~- 236 (341)
T PF13434_consen 159 PRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP-GFFPMDDSPFV- 236 (341)
T ss_dssp E---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS-S-EB----CCH-
T ss_pred CCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC-ccCCCccccch-
Confidence 88886432111125689998876543 4578999999999999999999999875 899999999 77787766543
Q ss_pred HHHhhCcHHHHHHH
Q 035902 216 LLLKFLPCKLVDFI 229 (381)
Q Consensus 216 ~~~~~l~~~~~~~~ 229 (381)
.+++.++..+.+
T Consensus 237 --ne~f~P~~v~~f 248 (341)
T PF13434_consen 237 --NEIFSPEYVDYF 248 (341)
T ss_dssp --HGGGSHHHHHHH
T ss_pred --hhhcCchhhhhh
Confidence 334545554444
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-22 Score=172.60 Aligned_cols=334 Identities=21% Similarity=0.271 Sum_probs=206.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCCCCC-CCeeee-----------cCCcccccCCC----
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWKKRAY-DRMKLH-----------LAKQFCELPHM---- 64 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~~~~~-~~~~~~-----------~~~~~~~~~~~---- 64 (381)
+.+|++.||-||+.++.|..|...+ .++..+|+.+.+- |+..+. +...+. .|-+.+.+-++
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 3599999999999999999999985 6899999987553 554332 111111 11111111000
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE--EEEeecCCCceEEEEeCEEEEccCC
Q 035902 65 ----PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI--IVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
.+-..-..++++.|+.+|+++.+.++ -.++++.+|+.|...+.+.... +.+.++ ..++|+.||+++|.
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~-----~~y~ar~lVlg~G~ 155 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANG-----TVYRARNLVLGVGT 155 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCC-----cEEEeeeEEEccCC
Confidence 00011124678999999999999998 5789999999774433233333 344443 58999999999999
Q ss_pred CCCCCCC-CCCCCCCcceeecCCCCCC-CCCCCCe-EEEEcCCCCHHHHHHHHhhC----CCeeEEEEecCcceechhhH
Q 035902 139 NGLIPEV-PGLGSFEGEYMHSSKYENG-GKFIGKN-VLVVGCGNSGMEIAYDLSSC----GACTSIVVRGPVHVLTREIV 211 (381)
Q Consensus 139 ~~~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~~~~-v~viG~G~~~~e~a~~l~~~----g~~v~~i~r~~~~~~p~~~~ 211 (381)
.|.+|+. ..+. ..+++|+.++... .+...++ |.|||+|.||+|+...|... ..++.|++|+. .++|.+..
T Consensus 156 ~P~IP~~f~~l~--~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~-gf~p~d~S 232 (436)
T COG3486 156 QPYIPPCFRSLI--GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS-GFLPMDYS 232 (436)
T ss_pred CcCCChHHhCcC--ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC-CCCccccc
Confidence 9999853 2222 2468999988743 3334444 99999999999998888754 23589999999 78888766
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhc--CCCeEEccC--cce
Q 035902 212 FAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR--KGEIQVFPS--ITS 287 (381)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~--v~~ 287 (381)
.++ .+++.+++.+++........-.-+++.++....+....... .+..-|.+.+. +.++.+... +.+
T Consensus 233 kf~---~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~------Iy~~lY~~~l~~~~~~v~l~~~~ev~~ 303 (436)
T COG3486 233 KFG---LEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEE------IYDLLYEQSLGGRKPDVRLLSLSEVQS 303 (436)
T ss_pred hhh---hhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHH------HHHHHHHHHhcCCCCCeeeccccceee
Confidence 555 55666666666644333222222222222211111110000 01111222222 235666666 777
Q ss_pred EeCCe---EEEc-----C--CcEeeccEEEEecCCCCCcchhccccCC--cccccCCCCCCCCCCCC--C--CCCcEEEE
Q 035902 288 INRNE---VEFE-----N--GKIEEFEAIIFATGYKSTVRNWLKRADK--DFFDEYGMPKRNCPNHW--K--GENGLYCA 351 (381)
Q Consensus 288 v~~~~---v~~~-----~--g~~~~~D~vi~a~G~~p~~~~~~~~~~~--~~~~~~g~~~~~~~~~~--~--~~~~ifa~ 351 (381)
++..+ +.+. + .++++.|.||+|||++...+.|+. ... -..+++|...++.+... + ....||+.
T Consensus 304 ~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~-~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvq 382 (436)
T COG3486 304 VEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLE-GLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQ 382 (436)
T ss_pred eecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhh-hHHHhhcccccCCeEecCceeeecCCCCcceEEEe
Confidence 76543 4331 2 358899999999999988877765 422 12577877777733222 1 22369999
Q ss_pred ecccc
Q 035902 352 GFSRT 356 (381)
Q Consensus 352 Gd~~~ 356 (381)
|-..+
T Consensus 383 n~e~h 387 (436)
T COG3486 383 NAELH 387 (436)
T ss_pred ccccc
Confidence 97644
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-21 Score=183.45 Aligned_cols=305 Identities=17% Similarity=0.162 Sum_probs=181.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+||||++||-+|-+.|..|+++||.+..||..... . |.+.....+.+.-
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------i---------pnmkldk~vv~rr 1841 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------I---------PNMKLDKFVVQRR 1841 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------C---------CccchhHHHHHHH
Confidence 789999999999999999999999999999999999865432 1 2111222344444
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcce-----ee
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEY-----MH 157 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~-----~~ 157 (381)
-.++.+-|+++..|+++- +. +.++. -.-..|.+|+|+|+. |+..++||-+. +|-. .+
T Consensus 1842 v~ll~~egi~f~tn~eig--------k~--vs~d~------l~~~~daiv~a~gst~prdlpv~grd~-kgv~fame~l~ 1904 (2142)
T KOG0399|consen 1842 VDLLEQEGIRFVTNTEIG--------KH--VSLDE------LKKENDAIVLATGSTTPRDLPVPGRDL-KGVHFAMEFLE 1904 (2142)
T ss_pred HHHHHhhCceEEeecccc--------cc--ccHHH------HhhccCeEEEEeCCCCCcCCCCCCccc-cccHHHHHHHH
Confidence 556666799988887762 11 22111 234579999999999 88888888653 2210 11
Q ss_pred cC-------CC-CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecCcceechhhHHHHHHHHhhCcHHHHHH
Q 035902 158 SS-------KY-ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228 (381)
Q Consensus 158 ~~-------~~-~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 228 (381)
.. .. -...+..+|+++|||||.+|-++...-.++|++ |.-+.--|. |.........+.+|.-...++.
T Consensus 1905 ~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~---pp~~ra~~npwpqwprvfrvdy 1981 (2142)
T KOG0399|consen 1905 KNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQ---PPPERAPDNPWPQWPRVFRVDY 1981 (2142)
T ss_pred HhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCC---CCcccCCCCCCccCceEEEeec
Confidence 10 00 011234689999999999999998888888864 544432221 1111000111111100000000
Q ss_pred HHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEE----cCCcE
Q 035902 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEF----ENGKI 300 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~----~~g~~ 300 (381)
=..-..+.+-.|++.+.+...+. ..-.+++++=+.- |+.-..+ .+++ ++.+.
T Consensus 1982 gh~e~~~~~g~dpr~y~vltk~f--------------------~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~ 2041 (2142)
T KOG0399|consen 1982 GHAEAKEHYGSDPRTYSVLTKRF--------------------IGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEI 2041 (2142)
T ss_pred chHHHHHHhCCCcceeeeeeeee--------------------eccCCCceeeEEEEEEEEEecCCCceEEEEcCCccee
Confidence 00001111112333333221000 0001122222111 2222222 2333 23467
Q ss_pred eeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 301 EEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 301 ~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
++||.||+|.||--....... + .++ .|+++.+.+......++.+++||+|||+.+.. +|+++|+++|+++..
T Consensus 2042 ~eadlv~lamgf~gpe~~~~~-~-~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2042 IEADLVILAMGFVGPEKSVIE-Q-LNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred eecceeeeeccccCcchhhhh-h-cCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHHH
Confidence 899999999999866544444 3 555 77888888875566688999999999999876 999999999999976
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=174.13 Aligned_cols=275 Identities=19% Similarity=0.176 Sum_probs=183.1
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCC-CCCHHHHHHH
Q 035902 6 VVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPT-FVPRISFINY 82 (381)
Q Consensus 6 vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (381)
++|||+|++|+.+|..+++. +.+++++..+....... .+.+..... ......+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR---------------------CPLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC---------------------CccchHHhcccCCHHHhccc
Confidence 58999999999999998886 45888887775332100 000000000 1111111111
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.. ...+.++.++.+++|.+++... .. +.+.++ .+.||++++|||+.|..++ +.. ...........
T Consensus 60 ~~-~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~g------~~~yd~LvlatGa~~~~~~--~~~--~~~~~~~~~~~ 124 (415)
T COG0446 60 PR-FNRATGIDVRTGTEVTSIDPEN--KV--VLLDDG------EIEYDYLVLATGARPRPPP--ISD--WEGVVTLRLRE 124 (415)
T ss_pred ch-hHHhhCCEEeeCCEEEEecCCC--CE--EEECCC------cccccEEEEcCCCcccCCC--ccc--cCceEEECCHH
Confidence 11 1245578889999999998765 44 666664 7899999999999988775 111 11122222211
Q ss_pred CCCC-----CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhh-HHHHHHHHhhCcHHHHHHHHHHHhhh
Q 035902 163 NGGK-----FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREI-VFAGMLLLKFLPCKLVDFIVVMLSKM 236 (381)
Q Consensus 163 ~~~~-----~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (381)
.... ...++++|+|+|..|+++|..+.+.|.+|+++...+ ++++... .++...+
T Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~~~~~~~~------------------- 184 (415)
T COG0446 125 DAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLDPEVAEEL------------------- 184 (415)
T ss_pred HHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhhHHHHHHH-------------------
Confidence 1111 125899999999999999999999999999999998 6655543 3222222
Q ss_pred hhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe-------EEEcCCcEeeccEEE
Q 035902 237 KFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE-------VEFENGKIEEFEAII 307 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~-------v~~~~g~~~~~D~vi 307 (381)
.+.++..+|+++.+ +.+++... +...++..+++|.++
T Consensus 185 ----------------------------------~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~ 230 (415)
T COG0446 185 ----------------------------------AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVI 230 (415)
T ss_pred ----------------------------------HHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEE
Confidence 34446666777666 77777642 567788899999999
Q ss_pred EecCCCCCcchhccccCC--cccccCCCCCCCCCCCCCC-CCcEEEEeccccccc-------------CccHHHHHHHHH
Q 035902 308 FATGYKSTVRNWLKRADK--DFFDEYGMPKRNCPNHWKG-ENGLYCAGFSRTGLH-------------GISIDAKNIAND 371 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-~~~ifa~Gd~~~~~~-------------~a~~~a~~~a~~ 371 (381)
+++|.+|+.. +.. . . +.....|++.++ ..+.++ .+++|++||+..... .+..++..++.+
T Consensus 231 ~~~g~~p~~~-l~~-~-~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~ 306 (415)
T COG0446 231 IGPGERPNVV-LAN-D-ALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAEN 306 (415)
T ss_pred EeecccccHH-HHh-h-CccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHH
Confidence 9999999953 333 2 3 357778899999 456665 899999999754321 667777777777
Q ss_pred hhh
Q 035902 372 INL 374 (381)
Q Consensus 372 i~~ 374 (381)
+..
T Consensus 307 ~~~ 309 (415)
T COG0446 307 IAG 309 (415)
T ss_pred hcc
Confidence 764
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=174.06 Aligned_cols=294 Identities=19% Similarity=0.213 Sum_probs=183.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+||||||||+++|..|.+.|+.|+++|+.+..||.... ..|.+....++.+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y------------------------GIP~~kl~k~i~d~~ 179 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY------------------------GIPDFKLPKDILDRR 179 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe------------------------cCchhhccchHHHHH
Confidence 78999999999999999999999999999999988875432 123444455778888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
.+++++.|+++++++++-. . ++.+. -.-.||.|++|+|+. |+..+++|.+. ++ +....++.
T Consensus 180 i~~l~~~Gv~~~~~~~vG~--------~--it~~~------L~~e~Dav~l~~G~~~~~~l~i~g~d~-~g-v~~A~dfL 241 (457)
T COG0493 180 LELLERSGVEFKLNVRVGR--------D--ITLEE------LLKEYDAVFLATGAGKPRPLDIPGEDA-KG-VAFALDFL 241 (457)
T ss_pred HHHHHHcCeEEEEcceECC--------c--CCHHH------HHHhhCEEEEeccccCCCCCCCCCcCC-Cc-chHHHHHH
Confidence 8888888999988887731 1 23222 123459999999999 88888888752 22 11111111
Q ss_pred --------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcc--eechhhHHHHHHHHhhCcHHH
Q 035902 163 --------------NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVH--VLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 163 --------------~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~--~~p~~~~~~~~~~~~~l~~~~ 225 (381)
......+++++|||+|.+++|++......|. +|+.+.|.... ..|....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~-------------- 307 (457)
T COG0493 242 TRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTW-------------- 307 (457)
T ss_pred HHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCccccc--------------
Confidence 1112235999999999999999999999997 58888644311 0000000
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhh--cCCCeEEccC--cceEeC-------CeEE
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKI--RKGEIQVFPS--ITSINR-------NEVE 294 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--v~~v~~-------~~v~ 294 (381)
... ..+......++.+.. .......+ .+++|+-.+. +..... ..+.
T Consensus 308 -~~~------~~~~~a~eeg~~~~~----------------~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~ 364 (457)
T COG0493 308 -AAQ------LEVRSAGEEGVERLP----------------FVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVG 364 (457)
T ss_pred -chh------hhhhhhhhcCCcccc----------------cCCceeEeecCCCcEeeeecccccccCcccccccccCcc
Confidence 000 000011111111000 00001111 1222221111 111100 0111
Q ss_pred EcC-CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHH
Q 035902 295 FEN-GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIA 369 (381)
Q Consensus 295 ~~~-g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a 369 (381)
... ...+++|.++.|+|+.++...+.. ...++ .+..|.+.++.....|+.|++|+.||++.+.. .|+.+|+.+|
T Consensus 365 v~gs~~~~~aD~v~~aig~~~~~~~~~~-~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aa 443 (457)
T COG0493 365 VIGTEKTDAADTVILAIGFEGDATDGLL-LEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAA 443 (457)
T ss_pred ccCceEEehHHHHHHHhccCCCcccccc-cccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHH
Confidence 122 247899999999999999765433 22244 77889999983333799999999999998654 9999999999
Q ss_pred HHhh-hccc
Q 035902 370 NDIN-LALT 377 (381)
Q Consensus 370 ~~i~-~~l~ 377 (381)
+.|. ..+.
T Consensus 444 k~i~~~~l~ 452 (457)
T COG0493 444 KAIDKELLL 452 (457)
T ss_pred HhhhHHHHh
Confidence 9999 4443
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-20 Score=159.47 Aligned_cols=303 Identities=17% Similarity=0.203 Sum_probs=187.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC--------CcCCCCCCCeeeecCCcccccCC-CCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS--------LWKKRAYDRMKLHLAKQFCELPH-MPFPSRTP 71 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 71 (381)
+...+|||+|.+..+++..+... +.++.+|..++.++- .|..........-....|.+... ..|..+ .
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd-~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD-G 256 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC-c
Confidence 35689999999988888777655 568999988776552 23222111100000000100000 000000 1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC-CC-CC
Q 035902 72 TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV-PG-LG 149 (381)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~-~g-~~ 149 (381)
.|.+.+++-+ +..-|+.+..+.+|..++..+ .. |++++| .+|.||.++||||.+|+..+. .- -+
T Consensus 257 FfvspeDLp~-----~~nGGvAvl~G~kvvkid~~d--~~--V~LnDG-----~~I~YdkcLIATG~~Pk~l~~~~~A~~ 322 (659)
T KOG1346|consen 257 FFVSPEDLPK-----AVNGGVAVLRGRKVVKIDEED--KK--VILNDG-----TTIGYDKCLIATGVRPKKLQVFEEASE 322 (659)
T ss_pred ceeChhHCcc-----cccCceEEEeccceEEeeccc--Ce--EEecCC-----cEeehhheeeecCcCcccchhhhhcCH
Confidence 2334444333 233477788888999888765 55 899998 899999999999999875543 11 11
Q ss_pred CCCcce--eecCCCCCCC---CCCCCeEEEEcCCCCHHHHHHHHhhC----CCeeEEEEecCcceechhhHHHHHHHHhh
Q 035902 150 SFEGEY--MHSSKYENGG---KFIGKNVLVVGCGNSGMEIAYDLSSC----GACTSIVVRGPVHVLTREIVFAGMLLLKF 220 (381)
Q Consensus 150 ~~~~~~--~~~~~~~~~~---~~~~~~v~viG~G~~~~e~a~~l~~~----g~~v~~i~r~~~~~~p~~~~~~~~~~~~~ 220 (381)
+.+.++ ++....+... ....++|.|||+|..|.|+|..|.+. |.+|+=+.... ..+...+.++
T Consensus 323 evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek--------~nm~kiLPey 394 (659)
T KOG1346|consen 323 EVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK--------YNMEKILPEY 394 (659)
T ss_pred HhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc--------CChhhhhHHH
Confidence 122222 2222211111 12458899999999999999998864 55665444333 1222222222
Q ss_pred CcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEE
Q 035902 221 LPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVE 294 (381)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~ 294 (381)
+..| ..+.+++++|.++++ |.++... .+.
T Consensus 395 ls~w---------------------------------------------t~ekir~~GV~V~pna~v~sv~~~~~nl~lk 429 (659)
T KOG1346|consen 395 LSQW---------------------------------------------TIEKIRKGGVDVRPNAKVESVRKCCKNLVLK 429 (659)
T ss_pred HHHH---------------------------------------------HHHHHHhcCceeccchhhhhhhhhccceEEE
Confidence 2111 256778899999988 6665432 466
Q ss_pred EcCCcEeeccEEEEecCCCCCcchhccccCCcc-ccc-CCCCCCCCCCCCCCCCcEEEEeccccccc------------C
Q 035902 295 FENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDE-YGMPKRNCPNHWKGENGLYCAGFSRTGLH------------G 360 (381)
Q Consensus 295 ~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~------------~ 360 (381)
+.||.++..|.|++|+|-.||.+..-. .++ +|+ -|-+.+| ...+...|||++||++.... .
T Consensus 430 L~dG~~l~tD~vVvavG~ePN~ela~~---sgLeiD~~lGGfrvn--aeL~ar~NvwvAGdaacF~D~~LGrRRVehhdh 504 (659)
T KOG1346|consen 430 LSDGSELRTDLVVVAVGEEPNSELAEA---SGLEIDEKLGGFRVN--AELKARENVWVAGDAACFEDGVLGRRRVEHHDH 504 (659)
T ss_pred ecCCCeeeeeeEEEEecCCCchhhccc---ccceeecccCcEEee--heeecccceeeecchhhhhcccccceecccccc
Confidence 789999999999999999999963322 455 443 4667777 44455679999999865321 8
Q ss_pred ccHHHHHHHHHhhhcccc
Q 035902 361 ISIDAKNIANDINLALTD 378 (381)
Q Consensus 361 a~~~a~~~a~~i~~~l~~ 378 (381)
|..+|+++++|+.+.-+-
T Consensus 505 avvSGRLAGENMtgAakp 522 (659)
T KOG1346|consen 505 AVVSGRLAGENMTGAAKP 522 (659)
T ss_pred ceeeceecccccccccCC
Confidence 888999999998876543
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-18 Score=156.18 Aligned_cols=161 Identities=18% Similarity=0.127 Sum_probs=100.0
Q ss_pred cccEEEECCCHHHHHHHHHHH-hCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLN-NLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~-~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
.++|+||||||||++||..|+ +.|.+|+|||+.+.++|.++.... +..+.-..+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~~ 95 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTYK 95 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHHH
Confidence 368999999999999999875 569999999999999987654311 22333346666
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC----------CCCC-
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP----------GLGS- 150 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~----------g~~~- 150 (381)
.+...+...++.+..+.++. .. ++.+. -.-.||.||+|+|+.+.-++++ |.+.
T Consensus 96 ~f~~~~~~~~v~f~gnv~VG--------~D--vt~ee------L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~ 159 (506)
T PTZ00188 96 TFDPVFLSPNYRFFGNVHVG--------VD--LKMEE------LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNP 159 (506)
T ss_pred HHHHHHhhCCeEEEeeeEec--------Cc--cCHHH------HHhcCCEEEEEcCCCCCCCCcccccceeeeccccccc
Confidence 66665555555544332221 00 22222 1237999999999995433311 2210
Q ss_pred --CCc------ceeecCCCCC------CC----CC-CCCeEEEEcCCCCHHHHHHHHhh--------------------C
Q 035902 151 --FEG------EYMHSSKYEN------GG----KF-IGKNVLVVGCGNSGMEIAYDLSS--------------------C 191 (381)
Q Consensus 151 --~~~------~~~~~~~~~~------~~----~~-~~~~v~viG~G~~~~e~a~~l~~--------------------~ 191 (381)
..| .+.+.....+ .. .+ ..++++|||.|+.|+++|+.|.. .
T Consensus 160 ~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s 239 (506)
T PTZ00188 160 RKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRH 239 (506)
T ss_pred cccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhC
Confidence 111 1112111111 00 01 45789999999999999998543 2
Q ss_pred C-CeeEEEEecC
Q 035902 192 G-ACTSIVVRGP 202 (381)
Q Consensus 192 g-~~v~~i~r~~ 202 (381)
. .+|+++.|+.
T Consensus 240 ~v~~V~ivgRRG 251 (506)
T PTZ00188 240 NIKHIYIVGRRG 251 (506)
T ss_pred CCcEEEEEEecC
Confidence 3 3699999998
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=149.36 Aligned_cols=158 Identities=22% Similarity=0.238 Sum_probs=109.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
..+|+|||+||||+++|..|.++ +.+|+|+|+.+.+.|..+... .|.++.-..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------------APDHpEvKnvi 76 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------------APDHPEVKNVI 76 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------------CCCCcchhhHH
Confidence 36899999999999999999985 679999999998877654331 13344444566
Q ss_pred HHHHHHHHHhCCccccccEE-EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeec
Q 035902 81 NYVDNYVSQMGINPRYHRSV-ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~ 158 (381)
..+.+.+++....+..|.+| .+ +.+.. -+=.||.||+|.|+. ++..+|||.+. .+ ++..
T Consensus 77 ntFt~~aE~~rfsf~gNv~vG~d-----------vsl~e------L~~~ydavvLaYGa~~dR~L~IPGe~l-~~-V~Sa 137 (468)
T KOG1800|consen 77 NTFTKTAEHERFSFFGNVKVGRD-----------VSLKE------LTDNYDAVVLAYGADGDRRLDIPGEEL-SG-VISA 137 (468)
T ss_pred HHHHHHhhccceEEEecceeccc-----------ccHHH------HhhcccEEEEEecCCCCcccCCCCccc-cc-ceeh
Confidence 66666777655555544444 11 22221 234699999999999 88889999762 22 2222
Q ss_pred CCC----C-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhC----------------------CCeeEEEEecC
Q 035902 159 SKY----E-------NGGKFIGKNVLVVGCGNSGMEIAYDLSSC----------------------GACTSIVVRGP 202 (381)
Q Consensus 159 ~~~----~-------~~~~~~~~~v~viG~G~~~~e~a~~l~~~----------------------g~~v~~i~r~~ 202 (381)
..+ . ...++....++|||.|..|+++|+.|... -++|+++.|+.
T Consensus 138 refv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRg 214 (468)
T KOG1800|consen 138 REFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRG 214 (468)
T ss_pred hhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccC
Confidence 211 1 12345688999999999999999888741 13689999998
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=171.03 Aligned_cols=323 Identities=13% Similarity=0.092 Sum_probs=168.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC--C-----CCCCCeeee-cCCcccccCCCCCCCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK--K-----RAYDRMKLH-LAKQFCELPHMPFPSRTPTFVP 75 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~--~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (381)
++|+||||||||++||+.|+++|++|+++|+....|+... . ..+..+... .+...-+...+ ..+.-..
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~y----GIp~R~~ 459 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEY----GITVRWD 459 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCccccc----Cccccch
Confidence 7899999999999999999999999999998764443211 0 000000000 00000000001 1110011
Q ss_pred HHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCc
Q 035902 76 RISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEG 153 (381)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~ 153 (381)
....+.++...+. .++.++.+..+ . .. ++.++- ....||.|++|||+. |..+++||.+. .+
T Consensus 460 -k~~l~~i~~il~~g~~v~~~~gv~l---G-----~d--it~edl-----~~~gyDAV~IATGA~kpr~L~IPGeda-~G 522 (1028)
T PRK06567 460 -KNNLDILRLILERNNNFKYYDGVAL---D-----FN--ITKEQA-----FDLGFDHIAFCIGAGQPKVLDIENFEA-KG 522 (1028)
T ss_pred -HHHHHHHHHHHhcCCceEEECCeEE---C-----cc--CCHHHH-----hhcCCCEEEEeCCCCCCCCCCCCCccC-CC
Confidence 1222323333322 12333334332 0 11 222211 246699999999995 99999999764 22
Q ss_pred ceeecCCCCCCC-------------CCCCCeEEEEcCCCCHHHHHHHHhh---CCCeeEEEEecCcceechhhHHHHHHH
Q 035902 154 EYMHSSKYENGG-------------KFIGKNVLVVGCGNSGMEIAYDLSS---CGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 154 ~~~~~~~~~~~~-------------~~~~~~v~viG~G~~~~e~a~~l~~---~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
++...++.... ...+++++|||||.+|+|+|..... .+.++++....+ ..+|..+.+++..+
T Consensus 523 -V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~~~~~~d~eia~~f 600 (1028)
T PRK06567 523 -VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-KDLTEEDKEIAEEF 600 (1028)
T ss_pred -eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-hhcccccHHHHHHH
Confidence 33333321110 1136899999999999999986654 344555555555 56677777777766
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccC-CCCCCCCCcccccccCCCccc--cchhhhhhcCCCeEEccC--cceEeCC-
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYG-LERPKKGPFYFKAITGQTPTI--DVGAMDKIRKGEIQVFPS--ITSINRN- 291 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~--v~~v~~~- 291 (381)
...+.............+ -.++.+ +. ..........|.. +.+..+...+.+|.++.. ..++..+
T Consensus 601 ~~h~r~~g~~~~~~~v~~----l~~~~G~Vt------IvYRr~~~empA~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~ 670 (1028)
T PRK06567 601 IAHAKLFKEAKNNEELRK----VFNKLGGAT------VYYRGRLQDSPAYKLNHEELIYALALGVDFKENMQPLRINVDK 670 (1028)
T ss_pred HHHHHhhcchhccchhhh----hhccCCceE------EEecCChhhCCCCCCCHHHHHHHHHcCcEEEecCCcEEEEecC
Confidence 665533220000000000 000000 00 0000000011221 122344445667777766 4444211
Q ss_pred -----eEEEc------------------------------CCcEeeccEEEEecCCCCCcchhccccCCcccccCCCCCC
Q 035902 292 -----EVEFE------------------------------NGKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKR 336 (381)
Q Consensus 292 -----~v~~~------------------------------~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~ 336 (381)
++.+. ...+++||.||+|+|..||+..+ . .
T Consensus 671 ~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~-~-~------------- 735 (1028)
T PRK06567 671 YGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD-E-D------------- 735 (1028)
T ss_pred CCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc-c-c-------------
Confidence 11111 11468999999999999998431 1 0
Q ss_pred CCCCCCCCCCcEEEEecccccccCccHHHHHHHHHhhhccccCC
Q 035902 337 NCPNHWKGENGLYCAGFSRTGLHGISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 337 ~~~~~~~~~~~ifa~Gd~~~~~~~a~~~a~~~a~~i~~~l~~~~ 380 (381)
+ ....++.+++|+- ..-.|+.+|+..+.+|.+.|..+.
T Consensus 736 ~-~s~~~d~~~~f~G-----tvv~A~as~k~~~~~i~~~l~~~~ 773 (1028)
T PRK06567 736 K-YSYFGDCNPKYSG-----SVVKALASSKEGYDAINKKLINNN 773 (1028)
T ss_pred c-cccccCCCCcccc-----HHHHHHHHHHhHHHHHHHHHhhCC
Confidence 0 1222344567764 233889999999999998886653
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.9e-17 Score=142.83 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=74.3
Q ss_pred hhhhhhc-CCCeEEccC-cceEeC---Ce--EEEcC---C--cEeeccEEEEecCCCCCcchh-ccccCCcc-cccCCCC
Q 035902 269 GAMDKIR-KGEIQVFPS-ITSINR---NE--VEFEN---G--KIEEFEAIIFATGYKSTVRNW-LKRADKDF-FDEYGMP 334 (381)
Q Consensus 269 ~~~~~~~-~~~v~~~~~-v~~v~~---~~--v~~~~---g--~~~~~D~vi~a~G~~p~~~~~-~~~~~~~~-~~~~g~~ 334 (381)
++....+ +.+|+++.+ +.++.. +. |..+| | .++++|.|++++|+.|....- +. ...|+ .+++||+
T Consensus 419 efY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia-~iLgL~~~~~gF~ 497 (622)
T COG1148 419 EFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIA-KILGLSQDEDGFL 497 (622)
T ss_pred HHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHH-HhcCcccCCCCcc
Confidence 3333334 678888888 555543 23 33333 2 378999999999999965432 22 33566 7889999
Q ss_pred CCCCCCCC---CCCCcEEEEeccccccc--CccHHHHHHHHHhhhccc
Q 035902 335 KRNCPNHW---KGENGLYCAGFSRTGLH--GISIDAKNIANDINLALT 377 (381)
Q Consensus 335 ~~~~~~~~---~~~~~ifa~Gd~~~~~~--~a~~~a~~~a~~i~~~l~ 377 (381)
.-.+|... ++.+|||.+|-+.+... .+..||..+|......+.
T Consensus 498 k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 498 KEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred ccCCCCcccccccCCcEEEeecccCCccHHHHHHHhHHHHHHHHHHhh
Confidence 88877655 57899999998887654 677777777766665554
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-16 Score=146.13 Aligned_cols=189 Identities=17% Similarity=0.175 Sum_probs=113.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCC--CcCCCCC-CCeeee--------cCCcccccCCCC-----
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSAS--LWKKRAY-DRMKLH--------LAKQFCELPHMP----- 65 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~--~~~~~~~-~~~~~~--------~~~~~~~~~~~~----- 65 (381)
++|+|||||++|+++|.+|.+.+ .+|+|||++..+|. .|..... +.+..+ .+..+..|....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 68999999999999999998864 58999999887774 2443111 111111 011122221100
Q ss_pred --CC-----CCCCCCCCHHHHHHHHHHHHHH-------hC--CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 66 --FP-----SRTPTFVPRISFINYVDNYVSQ-------MG--INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 66 --~~-----~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
+. ..-..++++..+.+|+++.++. .+ +.++.+++|+++...+ +.|.+++.++ ...+.+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~g----g~~i~a 155 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQD----LPSETF 155 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCC----CeEEEc
Confidence 00 0112466666665555543332 23 4566788999998765 5677776542 157899
Q ss_pred CEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCC-----------------
Q 035902 130 RYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCG----------------- 192 (381)
Q Consensus 130 d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g----------------- 192 (381)
|+||+|+|..+..+ .++...+ +-..+.........+.+|+|+|.|.+++|++..|...|
T Consensus 156 D~VVLAtGh~~p~~-~~~~~~y---i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~ 231 (534)
T PRK09897 156 DLAVIATGHVWPDE-EEATRTY---FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDN 231 (534)
T ss_pred CEEEECCCCCCCCC-Chhhccc---cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecC
Confidence 99999999863211 1111111 11111111111224689999999999999998887552
Q ss_pred ----CeeEEEEecC
Q 035902 193 ----ACTSIVVRGP 202 (381)
Q Consensus 193 ----~~v~~i~r~~ 202 (381)
.+|++++|+.
T Consensus 232 sg~~~~I~a~SRrG 245 (534)
T PRK09897 232 ASEKLNITLMSRTG 245 (534)
T ss_pred CCCCceEEEEeCCC
Confidence 3688999887
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-18 Score=144.60 Aligned_cols=121 Identities=26% Similarity=0.327 Sum_probs=75.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH---
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN--- 81 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 81 (381)
||+|||||+||++||..|++.+.+++|+|+.+..+.. .. ..+... ..........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~--~~--------------~~~~~~---~~~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN--SG--------------CIPSPL---LVEIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH--HS--------------HHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc--cc--------------cccccc---cccccccccccccccc
Confidence 6999999999999999999999999999887522110 00 000000 0000000001111
Q ss_pred -HHHHHHHHhCCccccccEEEEEEEeCCCCeE-----EEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 82 -YVDNYVSQMGINPRYHRSVESASYDENAKAW-----IIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-----~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
.+.+.+...++++++++++.+++... +.+ .+... ...+..++.||+||+|||+.|..|.+||.
T Consensus 62 ~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~--~~~~~~~~~~d~lviAtG~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVV--ETGDGREIKYDYLVIATGSRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEE--ETTTEEEEEEEEEEEESTEEEEEESSTTT
T ss_pred cccccccccceEEEeeccccccccccc--cccccCcccceee--ccCCceEecCCeeeecCccccceeecCCC
Confidence 22223345688887889999998765 321 12221 11234789999999999999988888886
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=130.77 Aligned_cols=359 Identities=17% Similarity=0.241 Sum_probs=191.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC---CCeEEEecCCCCCC-CcCCCCC---------CCeeeec---CCcccccCCCC--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS---VPNIILEREDCSAS-LWKKRAY---------DRMKLHL---AKQFCELPHMP-- 65 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g---~~v~lie~~~~~g~-~~~~~~~---------~~~~~~~---~~~~~~~~~~~-- 65 (381)
++|+|||+|++|+++|.+|.+.- ..+.|||+...+|. ..+.... ..|.... +.+|..|-...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 78999999999999999999872 24999999988875 2222111 1222221 12222221111
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHh----CCc-c-ccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 66 -------FPSRTPTFVPRISFINYVDNYVSQM----GIN-P-RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 66 -------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
...+-+.|+++..+.+|+.+++..+ ... + ....+++++..+.+.+.|.+...++ ....||-+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-----~~~~ad~~ 156 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-----PSEIADII 156 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-----CeeeeeEE
Confidence 1223345788888888887765433 211 2 3445667777765457777888887 67899999
Q ss_pred EEccCCCCCCCCCCCCCCCCcce-eecC----CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecCcce
Q 035902 133 VVATGENGLIPEVPGLGSFEGEY-MHSS----KYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGPVHV 205 (381)
Q Consensus 133 IlAtG~~~~~~~~~g~~~~~~~~-~~~~----~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~~~~ 205 (381)
|+|||..+..+..-. ..+.+.. +... +..+..+ ...+++|+|+|.+.++....+..+|. +||.++|+. +
T Consensus 157 Vlatgh~~~~~~~~~-~~~~~~~~~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG--l 232 (474)
T COG4529 157 VLATGHSAPPADPAA-RDLKGSPRLIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG--L 232 (474)
T ss_pred EEeccCCCCCcchhh-hccCCCcceeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc--c
Confidence 999998844333211 1111111 1111 2222223 46679999999999999999999885 599999987 3
Q ss_pred echhhHH-------------HH------HHHHhhC------cHHHHHHH---HHHH--hhhhhcCccccCCCCCCCCCcc
Q 035902 206 LTREIVF-------------AG------MLLLKFL------PCKLVDFI---VVML--SKMKFGNLFKYGLERPKKGPFY 255 (381)
Q Consensus 206 ~p~~~~~-------------~~------~~~~~~l------~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~ 255 (381)
.|..+.+ .. ..+...+ ..+|.+.+ .... ....+...++..+.+... +++
T Consensus 233 ~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~-~~~ 311 (474)
T COG4529 233 VPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLR-PIW 311 (474)
T ss_pred ccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcc-cHH
Confidence 3332220 00 0000000 00011000 0000 000000011111111111 111
Q ss_pred cccccCCCccccchhhhhhcCCCeEEccC-cceEeCC----eEEEc----C-CcEeeccEEEEecCCCCCcch----hc-
Q 035902 256 FKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN----EVEFE----N-GKIEEFEAIIFATGYKSTVRN----WL- 320 (381)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~----~v~~~----~-g~~~~~D~vi~a~G~~p~~~~----~~- 320 (381)
.--.+-..|.+.......+.++.++++.+ +..++.. .+.+. + .+.+++|.||.|+|..+.... ++
T Consensus 312 dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~ 391 (474)
T COG4529 312 DVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLR 391 (474)
T ss_pred HHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHH
Confidence 11111233455556667777888888888 5555432 24332 1 257899999999998877532 11
Q ss_pred cccCCccc--cc--CCCCCCCCCC-----CCCCCCcEEEEeccccccc-------CccHHHHHHHHHhh
Q 035902 321 KRADKDFF--DE--YGMPKRNCPN-----HWKGENGLYCAGFSRTGLH-------GISIDAKNIANDIN 373 (381)
Q Consensus 321 ~~~~~~~~--~~--~g~~~~~~~~-----~~~~~~~ifa~Gd~~~~~~-------~a~~~a~~~a~~i~ 373 (381)
.+...|+. |. .| +.|+... .....+++|++|....+.. ....|+..+|..|.
T Consensus 392 sl~~~Gl~rpd~~~lG-l~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 392 SLGENGLARPDPPGLG-LDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred HHHhCCccccCCCCCc-eeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 11113331 11 12 2333111 1234679999999877653 44456666666655
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=122.82 Aligned_cols=291 Identities=16% Similarity=0.156 Sum_probs=150.4
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+.+|||||+||.+||.+|+.. ..+++|+..++.+-+ ...-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks--------------------------------vtn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS--------------------------------VTNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH--------------------------------HhhHHHHHHH
Confidence 368999999999999999987 348888887753211 0011122232
Q ss_pred HHHHH------HHhCCcc--ccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcc
Q 035902 83 VDNYV------SQMGINP--RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGE 154 (381)
Q Consensus 83 ~~~~~------~~~~~~~--~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~ 154 (381)
++++- ..++..+ ..+. |..++. ....+++++| .++.|++|++|+|+.|..-. +|.+ ..
T Consensus 49 lekfdv~eq~~~elg~~f~~~~~~-v~~~~s----~ehci~t~~g-----~~~ky~kKOG~tg~kPklq~-E~~n---~~ 114 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFRRFLND-VVTWDS----SEHCIHTQNG-----EKLKYFKLCLCTGYKPKLQV-EGIN---PK 114 (334)
T ss_pred HHhcCccccchhhhcccHHHHHHh-hhhhcc----ccceEEecCC-----ceeeEEEEEEecCCCcceee-cCCC---ce
Confidence 22210 0011111 0111 222222 2234888887 78999999999999987542 3322 23
Q ss_pred eeecCCCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH-HHHHHHHhhCcHH----
Q 035902 155 YMHSSKYENGGK-----FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV-FAGMLLLKFLPCK---- 224 (381)
Q Consensus 155 ~~~~~~~~~~~~-----~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~-~~~~~~~~~l~~~---- 224 (381)
++...+...... ...|.|+|+|.|-+++|++.++.-. +|+|....+ ++...+.. ....++...+.-.
T Consensus 115 Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~IsaTFfdpGaaef~~i~l~a~~s~~ 191 (334)
T KOG2755|consen 115 IVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISATFFDPGAAEFYDINLRADRSTR 191 (334)
T ss_pred EEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhhcccCccHHHHhHhhhhcccccc
Confidence 454434332222 3689999999999999999998765 788988877 54332222 2111111111000
Q ss_pred -HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceE-eCC---eEEEc--
Q 035902 225 -LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSI-NRN---EVEFE-- 296 (381)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v-~~~---~v~~~-- 296 (381)
...+-+++. +.+- ..... ..-+..+|.+.....-.-...+ .+..+.+... +..+ ++. .+.-.
T Consensus 192 ~iaiKh~q~i-ea~p-k~~~n-~vg~algpDw~s~~dl~g~~es-------eer~l~~l~~~~~~~~d~~d~~sv~~~~~ 261 (334)
T KOG2755|consen 192 IIAIKHFQYI-EAFP-KCEEN-NVGPALGPDWHSQIDLQGISES-------ENRSLTYLRNCVITSTDTSDNLSVHYMDK 261 (334)
T ss_pred hhhhhhhhhh-hhcC-ccccc-CcccccCcchhhhcccccchhh-------hhhhhHHhhhheeeeccchhhcccccccc
Confidence 000000000 0000 00000 0012223332221111000000 0111111111 1111 111 12111
Q ss_pred -CC--cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccc
Q 035902 297 -NG--KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357 (381)
Q Consensus 297 -~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~ 357 (381)
.+ ..+.||.++.|+|..||.+ +.. ...-.+.++|-+.++ ..+.|+.|++|++||+-..
T Consensus 262 ek~~~~qlt~d~ivSatgvtpn~e-~~~-~~~lq~~edggikvd-d~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 262 EKMADNQLTCDFIVSATGVTPNSE-WAM-NKMLQITEDGGIKVD-DAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred cccccceeeeeEEEeccccCcCce-EEe-cChhhhccccCeeeh-hhccccccceeeecceecc
Confidence 11 3577999999999999998 544 323336677778888 4778999999999997553
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-15 Score=128.91 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=94.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCC-----------CCCeeeecC---Cc----ccccC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRA-----------YDRMKLHLA---KQ----FCELP 62 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~-----------~~~~~~~~~---~~----~~~~~ 62 (381)
|+.+||+||||||||++||..+.+.|.+|+|||+.+.+|....-.- +..+....+ .. +..|.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 7789999999999999999999999999999999997775432210 111111111 00 00000
Q ss_pred C-----------CCCCC-----CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 63 H-----------MPFPS-----RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 63 ~-----------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
. ..+.. -+|.--+...+++.+...+++.|++++++++|.++..++ ..|.+.+.++ .+
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g-----~~ 153 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSG-----ET 153 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCC-----CE
Confidence 0 00000 112223467889999999999999999999999999876 6788999987 58
Q ss_pred EEeCEEEEccCCC
Q 035902 127 YVARYLVVATGEN 139 (381)
Q Consensus 127 ~~~d~vIlAtG~~ 139 (381)
++||.+|+|||..
T Consensus 154 i~~d~lilAtGG~ 166 (408)
T COG2081 154 VKCDSLILATGGK 166 (408)
T ss_pred EEccEEEEecCCc
Confidence 9999999999943
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=125.24 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=71.3
Q ss_pred chhhhhhcCCCeEEccC--cceEeCC--eEEEc---C-Cc--EeeccEEEEecCCCCCcchhccccCCcccccCCCCCCC
Q 035902 268 VGAMDKIRKGEIQVFPS--ITSINRN--EVEFE---N-GK--IEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRN 337 (381)
Q Consensus 268 ~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~---~-g~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~ 337 (381)
+.+.+.+++.+|++... +.++..+ ..+|+ + |. +++++.+=+.+-.++. .++. . ..+.|..||+.+|
T Consensus 240 ~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p--e~l~-~-s~~adktGfvdVD 315 (446)
T KOG3851|consen 240 DALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP--EVLA-N-SDLADKTGFVDVD 315 (446)
T ss_pred HHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh--hhhh-c-CcccCcccceecC
Confidence 34456666777776654 4444332 23332 2 53 5667776666555543 4454 4 6689999999999
Q ss_pred CCCCC-CCCCcEEEEeccccccc-----CccHHHHHHHHHhhhcccc
Q 035902 338 CPNHW-KGENGLYCAGFSRTGLH-----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 338 ~~~~~-~~~~~ifa~Gd~~~~~~-----~a~~~a~~~a~~i~~~l~~ 378 (381)
....+ +..||+|++|||.+.++ .+..|...+-+|+...++.
T Consensus 316 ~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g 362 (446)
T KOG3851|consen 316 QSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQG 362 (446)
T ss_pred hhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcC
Confidence 54444 57899999999999987 4457788888888776654
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=123.92 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++||+|||+|++|+++|..+++.|.+|+|||+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 15999999999999999999999999999999864
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-13 Score=123.24 Aligned_cols=130 Identities=21% Similarity=0.242 Sum_probs=74.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC------------CCCCeeee---cCCcc----------
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR------------AYDRMKLH---LAKQF---------- 58 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~------------~~~~~~~~---~~~~~---------- 58 (381)
|||+|||||+||++||+.+++.|.+|+|+|+++.+|...... ....+... .+...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999998776422110 00111110 00000
Q ss_pred -----cccCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE
Q 035902 59 -----CELPHMPFPS-----RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV 128 (381)
Q Consensus 59 -----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 128 (381)
+.-...+... -+|.-.+...+.+.+.+.+++.+++++++++|.++..++ ++.|.|.++++ ..+.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~~-----~~~~ 154 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKNG-----GEYE 154 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETTT-----EEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccCc-----cccc
Confidence 0000011000 012222466788899999999999999999999998876 35588888443 7899
Q ss_pred eCEEEEccCCC
Q 035902 129 ARYLVVATGEN 139 (381)
Q Consensus 129 ~d~vIlAtG~~ 139 (381)
+|.||+|||..
T Consensus 155 a~~vILAtGG~ 165 (409)
T PF03486_consen 155 ADAVILATGGK 165 (409)
T ss_dssp ESEEEE----S
T ss_pred CCEEEEecCCC
Confidence 99999999975
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=117.93 Aligned_cols=140 Identities=22% Similarity=0.285 Sum_probs=91.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC--C-----CcCC--------CCCCCee-----ee-cCCcc-
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA--S-----LWKK--------RAYDRMK-----LH-LAKQF- 58 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g--~-----~~~~--------~~~~~~~-----~~-~~~~~- 58 (381)
|+++||+||||||+|+++|..|+++|++|+|||+.+... + .+.. ..+..+. .. .....
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 788999999999999999999999999999999876421 1 1100 0000000 00 00000
Q ss_pred -cccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 59 -CELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
..+...+....+.....+..+.+.+.+.+++.+++++++++++++..++ +.+.+++.++ .++++|+||.|+|
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~g-----~~i~a~~vVgADG 153 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSDG-----RTLRAQYLVGCDG 153 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECCC-----CEEEeCEEEEecC
Confidence 0011111101111223456788888888888899999999999998765 4556666554 4799999999999
Q ss_pred CCCCCCCCCC
Q 035902 138 ENGLIPEVPG 147 (381)
Q Consensus 138 ~~~~~~~~~g 147 (381)
.++...+..|
T Consensus 154 ~~S~vR~~lg 163 (488)
T PRK06834 154 GRSLVRKAAG 163 (488)
T ss_pred CCCCcHhhcC
Confidence 9966554433
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=107.46 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=87.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC-CCCeeeec-CCcccccCCCCCCCCCC--CCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRA-YDRMKLHL-AKQFCELPHMPFPSRTP--TFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~ 77 (381)
++||+||||||||++||+.|++.|++|+|+|+...+|+ .|.... ++...... ...++.....++....+ ....+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 48999999999999999999999999999999987765 443211 11111100 00111111111111101 123567
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEee------cCCCceEEEEeCEEEEccCCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKN------TALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++...+.+.+.+.+++++.+++|.++..+++.....+.... +...+...++++.||+|||...
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 78888888888889999999999998765422222233221 1122346899999999999873
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-12 Score=111.44 Aligned_cols=134 Identities=18% Similarity=0.296 Sum_probs=86.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCC-----CCCeeee--------cCCcccccC----CCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRA-----YDRMKLH--------LAKQFCELP----HMPF 66 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~-----~~~~~~~--------~~~~~~~~~----~~~~ 66 (381)
+||+|||||++|+++|+.|++.|.+|+|+|+....+..+.... ...+... ....++... ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 6999999999999999999999999999999876543222110 0000000 000000000 0111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 67 PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.......++..+.+.+.+.+.+.++++++++++.++..++ +.+.+.+.++ ...+++|+||+|+|......
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~~----~~~~~a~~vv~a~G~~s~~~ 151 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRGG----EGTVTAKIVIGADGSRSIVA 151 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcCc----cEEEEeCEEEECCCcchHHH
Confidence 11111235677888888888888899999999999988765 4444544332 25799999999999985433
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=105.55 Aligned_cols=137 Identities=21% Similarity=0.237 Sum_probs=88.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC-CCCeeeec-CCcccccCCCCCCCCCC--CCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRA-YDRMKLHL-AKQFCELPHMPFPSRTP--TFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~ 77 (381)
++||+||||||+|++||+.|++.|.+|+|+|++..+|+ .|.... ++.+.... ...+......++...-. ....+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 48999999999999999999999999999999988764 554321 11111110 01111111222211111 123456
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCC-CeEEEEEee------cCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENA-KAWIIVAKN------TALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~------~~~~~~~~~~~d~vIlAtG~~ 139 (381)
++.+.+.+.+.+.+++++.++.+.++..+++. ....|.++. +...+...++++.||.|||..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 78888888888889999999999998876532 122233321 111234689999999999976
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=100.22 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=92.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC-CCCeeeecCCc-ccccCCCCCCCCCCC--CCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRA-YDRMKLHLAKQ-FCELPHMPFPSRTPT--FVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~ 77 (381)
+.||+||||||+|++||++|++.|.||+|||++-.+|| .|.-.+ ++.+....+.. +..-...++.+.-+. .....
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 47999999999999999999999999999999887765 787543 44444433322 222222333332222 23455
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCC------eEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAK------AWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~------~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
++...+...+-+.+..+...+.|.++-..++.. +|+-....+...++..+++++||-|||-.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 666666666666788888888999987766422 23322233344556789999999999976
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=116.32 Aligned_cols=138 Identities=22% Similarity=0.285 Sum_probs=87.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC------CcCC------------------CCCCCeeeecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS------LWKK------------------RAYDRMKLHLAK 56 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~------~~~~------------------~~~~~~~~~~~~ 56 (381)
|+++||+||||||+|+++|..|+++|++|+|||+.+.... .+.. ..+..+......
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 8889999999999999999999999999999999864321 1100 001111110000
Q ss_pred c-ccccCCC-------CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE
Q 035902 57 Q-FCELPHM-------PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV 128 (381)
Q Consensus 57 ~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 128 (381)
. ....... ..+........+..+.+.+.+.+.+.++++++++++.++..++ +.+.+++.+.. +.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~~--~~~~i~ 156 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGPA--GEETVR 156 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeCC--CeEEEE
Confidence 0 0000000 0000011134456677788888888899999999999998765 44556553221 126799
Q ss_pred eCEEEEccCCCCCC
Q 035902 129 ARYLVVATGENGLI 142 (381)
Q Consensus 129 ~d~vIlAtG~~~~~ 142 (381)
+|+||.|+|.+..+
T Consensus 157 a~~vVgADG~~S~v 170 (502)
T PRK06184 157 ARYLVGADGGRSFV 170 (502)
T ss_pred eCEEEECCCCchHH
Confidence 99999999998543
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=113.59 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=85.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecC-C----CCCCCcCC-------------CCCCCeeeecCCcccccCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERE-D----CSASLWKK-------------RAYDRMKLHLAKQFCELPHMP 65 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~-~----~~g~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 65 (381)
|||+||||||||+++|+.|++.|++|+|+|+. . |.++.... ..+..+....+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999987 2 22221100 011111111111100000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecC---CCceEEEEeCEEEEccCCCCCC
Q 035902 66 FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA---LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
....+.....+..+.+++.+.+.+.|++++. +.++++..++ +.+.++..++. .++..++++|+||.|+|..+.+
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIH-GLFLKLERDR--DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcC--CeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 1111112367888999999988888988864 4688887655 55667766421 1223579999999999988554
Q ss_pred C
Q 035902 143 P 143 (381)
Q Consensus 143 ~ 143 (381)
.
T Consensus 158 ~ 158 (388)
T TIGR02023 158 A 158 (388)
T ss_pred H
Confidence 3
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=114.50 Aligned_cols=139 Identities=19% Similarity=0.262 Sum_probs=89.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC---C----------------------CcCC------CCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA---S----------------------LWKK------RAYDR 49 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g---~----------------------~~~~------~~~~~ 49 (381)
|+++||+||||||+|+++|..|++.|++|+|+|+.+... + .|.. ..+..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 778999999999999999999999999999999876421 1 0100 00011
Q ss_pred eeeecCCcccccCCCCC-CCCCC---CCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCce
Q 035902 50 MKLHLAKQFCELPHMPF-PSRTP---TFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAY 124 (381)
Q Consensus 50 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 124 (381)
+........... .+.. ....+ ....+..+.+.+.+.+... ++++++++++.++..++ ....+++.++
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g----- 152 (400)
T PRK08013 81 MEVWDKDSFGRI-AFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTLKDG----- 152 (400)
T ss_pred EEEEeCCCCceE-EEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEEcCC-----
Confidence 111000000000 0000 00111 1245677788887777664 78999999999997765 4455777665
Q ss_pred EEEEeCEEEEccCCCCCCCCCCC
Q 035902 125 EEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 125 ~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
+++++|+||.|+|.++.+...-|
T Consensus 153 ~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 153 SMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred CEEEeeEEEEeCCCCcHHHHHcC
Confidence 57999999999999966554333
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-11 Score=96.66 Aligned_cols=125 Identities=20% Similarity=0.321 Sum_probs=84.1
Q ss_pred EEECCCHHHHHHHHHHHhC-----CCCeEEEecCCCC-CCCcCCCCCCCeeeecC------------CcccccCCCCC--
Q 035902 7 VIVGAGPAGLATSACLNNL-----SVPNIILEREDCS-ASLWKKRAYDRMKLHLA------------KQFCELPHMPF-- 66 (381)
Q Consensus 7 vIIGaG~aG~~~A~~l~~~-----g~~v~lie~~~~~-g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-- 66 (381)
+|||||++|++++.+|.++ ..+|+|||++... |+.|.....+...++.+ ..+..|-....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999988 4599999997654 23665542222222222 12221111111
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHh------CCcc-ccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEcc
Q 035902 67 ---PSRTPTFVPRISFINYVDNYVSQM------GINP-RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVAT 136 (381)
Q Consensus 67 ---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAt 136 (381)
......|+++..+.+|+++.++.. ++++ +...+|++++..+ +.|.+.+.++ ..+.+|.||+||
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g-----~~~~~d~VvLa~ 153 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTADG-----QSIRADAVVLAT 153 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECCC-----CEEEeCEEEECC
Confidence 123346889999999988776653 3333 3456888888876 5588888887 778999999999
Q ss_pred CC
Q 035902 137 GE 138 (381)
Q Consensus 137 G~ 138 (381)
|.
T Consensus 154 Gh 155 (156)
T PF13454_consen 154 GH 155 (156)
T ss_pred CC
Confidence 95
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.4e-11 Score=111.62 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=86.0
Q ss_pred CC--cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-------cCCC---CCCC---------eeeec-----
Q 035902 1 ME--EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-------WKKR---AYDR---------MKLHL----- 54 (381)
Q Consensus 1 M~--~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-------~~~~---~~~~---------~~~~~----- 54 (381)
|+ ++||+||||||||++||+.|+++|++|+|+|+...++.. +... .++. .....
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 80 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFM 80 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEE
Confidence 64 399999999999999999999999999999998655421 1100 0000 00000
Q ss_pred -CCccc--ccCCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 55 -AKQFC--ELPHMP--FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 55 -~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
..... .+.... .+....-...+.++.+++.+.+++.|++++.+++|+++..++ +.+.+...++ ..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g-----~~i~A 153 (428)
T PRK10157 81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADG-----DVIEA 153 (428)
T ss_pred cCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCC-----cEEEC
Confidence 00000 000000 000001123577888888888888999999999999987654 4433333333 57899
Q ss_pred CEEEEccCCCCCCC
Q 035902 130 RYLVVATGENGLIP 143 (381)
Q Consensus 130 d~vIlAtG~~~~~~ 143 (381)
+.||+|+|......
T Consensus 154 ~~VI~A~G~~s~l~ 167 (428)
T PRK10157 154 KTVILADGVNSILA 167 (428)
T ss_pred CEEEEEeCCCHHHH
Confidence 99999999875433
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=113.76 Aligned_cols=138 Identities=16% Similarity=0.250 Sum_probs=86.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC------cCC--------C----------CCCCeeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL------WKK--------R----------AYDRMKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~------~~~--------~----------~~~~~~~~~~~~~ 58 (381)
++||+||||||+|+++|..|++.|++|+|||+.+..... +.. . .+...........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 489999999999999999999999999999997643110 000 0 0000110000000
Q ss_pred cccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 59 CELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
..+........+....++..+.+.+.+.+++.+++++++++++++..++ +...+++.+.. +..++++|+||.|+|.
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~--g~~~i~a~~vVgADG~ 157 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRGPD--GLRTLTSSYVVGADGA 157 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEeCC--ccEEEEeCEEEECCCC
Confidence 0000000000111124566788888888888899999999999998765 44556655321 1257999999999999
Q ss_pred CCCCCC
Q 035902 139 NGLIPE 144 (381)
Q Consensus 139 ~~~~~~ 144 (381)
++.+..
T Consensus 158 ~S~vR~ 163 (493)
T PRK08244 158 GSIVRK 163 (493)
T ss_pred ChHHHH
Confidence 854433
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-11 Score=110.86 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=89.2
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC----CcCC----------C----------CCCCeeeecC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS----LWKK----------R----------AYDRMKLHLA 55 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~----~~~~----------~----------~~~~~~~~~~ 55 (381)
|. .+||+|||||++|+++|..|++.|++|+|+|+.+.... .... . ....+.....
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 54 38899999999999999999999999999998864321 0000 0 0011111100
Q ss_pred Cc--ccccCCCC-CCCCC--CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 56 KQ--FCELPHMP-FPSRT--PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 56 ~~--~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
.. ...++... ....+ .....+.++.+.+.+.+.+.++++++++++.++..++ +.+.+.+.++ .++.+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad 153 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDG-----TTGRYD 153 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCC-----CEEEcC
Confidence 00 00000000 00011 1234577888888888888899999999999998765 5566777665 579999
Q ss_pred EEEEccCCCCCCC
Q 035902 131 YLVVATGENGLIP 143 (381)
Q Consensus 131 ~vIlAtG~~~~~~ 143 (381)
.||+|+|.++...
T Consensus 154 ~vI~AdG~~s~~r 166 (375)
T PRK06847 154 LVVGADGLYSKVR 166 (375)
T ss_pred EEEECcCCCcchh
Confidence 9999999986544
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=111.58 Aligned_cols=137 Identities=21% Similarity=0.267 Sum_probs=90.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC------CCCCCeeeecC--------CcccccCCC--
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK------RAYDRMKLHLA--------KQFCELPHM-- 64 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~------~~~~~~~~~~~--------~~~~~~~~~-- 64 (381)
|.++||+||||||||++||+.|++.|++|+|+|+...+|..... .....+..... ......+..
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 45799999999999999999999999999999998766642211 00111110000 000000000
Q ss_pred --CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 65 --PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+....-...+..+.++|.+.+++.|.+++.++.+..+..++ ....+....+. .++++++||.|+|+....
T Consensus 81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~--~~~~~~~~~~~----~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED--DGVVVGVRAGD----DEVRAKVVIDADGVNSAL 154 (396)
T ss_pred EEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC--CcEEEEEEcCC----EEEEcCEEEECCCcchHH
Confidence 0000001133577888999999999999999999999998876 33334433321 689999999999998444
Q ss_pred C
Q 035902 143 P 143 (381)
Q Consensus 143 ~ 143 (381)
.
T Consensus 155 ~ 155 (396)
T COG0644 155 A 155 (396)
T ss_pred H
Confidence 3
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=108.11 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=84.7
Q ss_pred CC--cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc------CCCC----CCCeeeecC------Cccccc-
Q 035902 1 ME--EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW------KKRA----YDRMKLHLA------KQFCEL- 61 (381)
Q Consensus 1 M~--~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~------~~~~----~~~~~~~~~------~~~~~~- 61 (381)
|+ ++||+||||||||++||+.|++.|.+|+|||+.+.++... .... .+.+....+ .....+
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 80 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEE
Confidence 64 4899999999999999999999999999999987543211 0000 010000000 000000
Q ss_pred -----CCCCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 62 -----PHMPFPS-------RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 62 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
....+.. ...-...+..+.+++.+.+++.|++++.+++|+++..++ +.+.....++ ..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~-----~~i~A 153 (429)
T PRK10015 81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGD-----DILEA 153 (429)
T ss_pred eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCC-----eEEEC
Confidence 0000000 001123567788888888888899999999999987654 3433222222 57999
Q ss_pred CEEEEccCCCCCC
Q 035902 130 RYLVVATGENGLI 142 (381)
Q Consensus 130 d~vIlAtG~~~~~ 142 (381)
+.||+|+|.....
T Consensus 154 ~~VI~AdG~~s~v 166 (429)
T PRK10015 154 NVVILADGVNSML 166 (429)
T ss_pred CEEEEccCcchhh
Confidence 9999999987544
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=110.14 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=88.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC----------------------C--CC--CeeeecC-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR----------------------A--YD--RMKLHLA- 55 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~----------------------~--~~--~~~~~~~- 55 (381)
++||+|||||++|+++|..|+++|++|+|||+.+......... . .. .......
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 4799999999999999999999999999999986442211000 0 00 0000000
Q ss_pred ----------CcccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceE
Q 035902 56 ----------KQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE 125 (381)
Q Consensus 56 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~ 125 (381)
.....+. ............+.++.+.|.+.+++.++++++++++.++..+. ....+.+.+...++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~ 157 (356)
T PF01494_consen 81 SDSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEE 157 (356)
T ss_dssp TTSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEE
T ss_pred CCccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCcee
Confidence 0000000 00000111234577889999999988899999999999998776 4445666665555667
Q ss_pred EEEeCEEEEccCCCCCCCC
Q 035902 126 EYVARYLVVATGENGLIPE 144 (381)
Q Consensus 126 ~~~~d~vIlAtG~~~~~~~ 144 (381)
++++|.||.|.|.+..+..
T Consensus 158 ~i~adlvVgADG~~S~vR~ 176 (356)
T PF01494_consen 158 TIEADLVVGADGAHSKVRK 176 (356)
T ss_dssp EEEESEEEE-SGTT-HHHH
T ss_pred EEEEeeeecccCcccchhh
Confidence 8999999999999965443
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=108.19 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=88.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC----C-C-------------------cCC------CCCCCeee
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA----S-L-------------------WKK------RAYDRMKL 52 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g----~-~-------------------~~~------~~~~~~~~ 52 (381)
.+||+||||||+|+++|+.|+++|++|+|||+.+... + . |.. ..+..+..
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 5899999999999999999999999999999975321 0 0 000 00001100
Q ss_pred ecCC--cccccCCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 53 HLAK--QFCELPHMPF-PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 53 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
.... ....+..... .........+..+.+.+.+.+++.+++++++++|+++..++ +.+.+++.++ ..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~a 158 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLRLDDG-----RRLEA 158 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEEECCC-----CEEEe
Confidence 0000 0000000000 00001123456778888888888899999999999998765 5566776655 57999
Q ss_pred CEEEEccCCCCCCCCCCC
Q 035902 130 RYLVVATGENGLIPEVPG 147 (381)
Q Consensus 130 d~vIlAtG~~~~~~~~~g 147 (381)
|.||.|+|..+.+....|
T Consensus 159 ~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 159 ALAIAADGAASTLRELAG 176 (392)
T ss_pred CEEEEecCCCchHHHhhc
Confidence 999999999965554433
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=110.23 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=84.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------CCC----------CCeeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--------------RAY----------DRMKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--------------~~~----------~~~~~~~~~~~ 58 (381)
.+||+||||||+|+++|..|+++|.+|+|||+.+.....-+. ..+ ..........+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 489999999999999999999999999999998643211100 000 00000000001
Q ss_pred cccCC--CC-CC---CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 59 CELPH--MP-FP---SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 59 ~~~~~--~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
..... +. .+ .......++..+.+.+.+.+++.|++++++++|+++..++ +.+.+.+.++ +++++++|
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g-----~~v~a~~v 157 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNG-----ERIQSRYV 157 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCC-----cEEEeCEE
Confidence 00000 00 00 0001123456777788888888899999999999998865 4455665554 58999999
Q ss_pred EEccCCCCC
Q 035902 133 VVATGENGL 141 (381)
Q Consensus 133 IlAtG~~~~ 141 (381)
|.|+|.+..
T Consensus 158 VgADG~~S~ 166 (487)
T PRK07190 158 IGADGSRSF 166 (487)
T ss_pred EECCCCCHH
Confidence 999999843
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=108.30 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=83.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCC----Ceeeec--CCcccc-----cCCCCCCCCCC-C
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYD----RMKLHL--AKQFCE-----LPHMPFPSRTP-T 72 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~----~~~~~~--~~~~~~-----~~~~~~~~~~~-~ 72 (381)
||+|||||+||+++|+.|++.|.+|+|||+++..++......+. .+.... ...+.. .+........+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 79999999999999999999999999999988776522211111 010000 000000 00000000001 1
Q ss_pred CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 73 FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+..+.+.+.+.+.+.++.++ .+++.++.... ...+.|++.++ ..++++.||+|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g-----~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGG-----QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCC-----CEEEeCEEEECCCCch
Confidence 25577888888888887787764 66788877652 35566777665 5799999999999986
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=108.64 Aligned_cols=132 Identities=18% Similarity=0.255 Sum_probs=84.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-----CCcCCCCCCCeee------ecCCcccccCC-CCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-----SLWKKRAYDRMKL------HLAKQFCELPH-MPFPSRT 70 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-----~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~ 70 (381)
.+||+||||||||+++|..|++.|++|+|+|+.+... +.|... ...+.+ ..+........ .......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 4899999999999999999999999999999975322 122100 000000 00000000000 0000000
Q ss_pred C-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 71 P-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+ ....+.++.+.+.+.+.+.+++++ ..+|.++...+ +.+.|+++++ ..+++|.||+|+|..+...
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~~dG-----~~i~A~lVI~AdG~~s~l~ 172 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVCDDG-----VKIQASLVLDATGFSRCLV 172 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEECCC-----CEEEcCEEEECcCCCcCcc
Confidence 1 134677888888888887888874 57888888765 5567888776 6899999999999986543
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.4e-11 Score=95.45 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=81.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCC-CCCCeeeecCCc-ccccCCCCCCCCCCC--CCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKR-AYDRMKLHLAKQ-FCELPHMPFPSRTPT--FVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~ 77 (381)
++||+||||||+|++||+.|++.|++|++||++..+|| .|.-. .++.+....+.. +..--..++.+.-+. .....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 48999999999999999999999999999999988876 67653 355555544322 221112222211111 23456
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe------ecCCCceEEEEeCEEEEccCCCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK------NTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~------~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++...|...+-+.|..+...+.|.++-..+++..--|.++ .+.+.++..+++++||-|||-...
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 6777766666667888888888988876652221112222 233456789999999999998743
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=108.77 Aligned_cols=140 Identities=24% Similarity=0.275 Sum_probs=85.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-------C----CcCC--------CCCCCeeee--cC-Ccc
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-------S----LWKK--------RAYDRMKLH--LA-KQF 58 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-------~----~~~~--------~~~~~~~~~--~~-~~~ 58 (381)
|+++||+||||||+|+++|..|++.|++|+|+|+.+... | .+.. ..++.+... .+ ...
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA 80 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence 778999999999999999999999999999999986421 1 0000 000000000 00 000
Q ss_pred --cccC---CCCCCC------CCCCCCCHHHHHHHHHHHH-HHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 59 --CELP---HMPFPS------RTPTFVPRISFINYVDNYV-SQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 59 --~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
..-. ...++. ......++..+.+.+.+.+ +..+++++++++|+++...+ +.+.|.+.++ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~g-----~~ 153 (392)
T PRK09126 81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLANG-----RR 153 (392)
T ss_pred EEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcCC-----CE
Confidence 0000 000100 0001123445555554444 44688999999999997755 5566777665 57
Q ss_pred EEeCEEEEccCCCCCCCCCCC
Q 035902 127 YVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~~~~~g 147 (381)
+++|+||.|+|..+.....-|
T Consensus 154 ~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 154 LTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred EEeCEEEEeCCCCchhhHhcC
Confidence 999999999999866654433
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-10 Score=109.53 Aligned_cols=138 Identities=22% Similarity=0.281 Sum_probs=88.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------C----------CCCCeeeecCC--
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--------------R----------AYDRMKLHLAK-- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--------------~----------~~~~~~~~~~~-- 56 (381)
++||+||||||+|+++|..|++.|++|+|||+........+. . ....+......
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 589999999999999999999999999999998754321110 0 01111111000
Q ss_pred cccccCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 57 QFCELPH-MPFPSRTP--TFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 57 ~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
....+.. ......++ ....+.++.+.+.+.+.+. +++++++++++++..++ +.+.+++.+. .++.+++++|+|
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~~-~G~~~~i~ad~v 166 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTDA-DGQRETVRARYV 166 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEcC-CCCEEEEEEEEE
Confidence 0111110 00001111 2334567777887777664 88999999999998765 4566666532 223468999999
Q ss_pred EEccCCCCCCC
Q 035902 133 VVATGENGLIP 143 (381)
Q Consensus 133 IlAtG~~~~~~ 143 (381)
|.|+|.+..+.
T Consensus 167 VgADG~~S~vR 177 (538)
T PRK06183 167 VGCDGANSFVR 177 (538)
T ss_pred EecCCCchhHH
Confidence 99999985543
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=108.69 Aligned_cols=138 Identities=21% Similarity=0.277 Sum_probs=88.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCC--------CcCC--------CC----------CCCeeeecC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSAS--------LWKK--------RA----------YDRMKLHLA 55 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~--------~~~~--------~~----------~~~~~~~~~ 55 (381)
+||+||||||+|+++|..|++.| ++|+|+|+.+.... .+.. .. ...+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 89999999999999999999995 89999999764210 0000 00 001111000
Q ss_pred Cc-------ccccCCC-CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEE
Q 035902 56 KQ-------FCELPHM-PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEY 127 (381)
Q Consensus 56 ~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~ 127 (381)
.. ...+... .....+.....+..+.+.+.+.+.+.+++++++++|+++..++ +.+.+++.++ ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g-----~~~ 154 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDG-----SVL 154 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCC-----CEE
Confidence 00 0000000 0000111134677888888888888899999999999998765 5566777665 579
Q ss_pred EeCEEEEccCCCCCCCCCCCC
Q 035902 128 VARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 128 ~~d~vIlAtG~~~~~~~~~g~ 148 (381)
.+|.||.|+|..+......|.
T Consensus 155 ~ad~vI~AdG~~S~vr~~~g~ 175 (403)
T PRK07333 155 EARLLVAADGARSKLRELAGI 175 (403)
T ss_pred EeCEEEEcCCCChHHHHHcCC
Confidence 999999999998665544443
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=109.28 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=85.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC------CcC-------CC---------CCCC-----------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS------LWK-------KR---------AYDR----------- 49 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~------~~~-------~~---------~~~~----------- 49 (381)
++||+|||||++|+++|+.|+++|++|+|||+.+.... .+. .. .++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 48999999999999999999999999999998762100 000 00 0010
Q ss_pred eeeecCCcc--cccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 50 MKLHLAKQF--CELPHMPFP-SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 50 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
+........ ..+...... ........+..+.+.+.+.+++.++++++++++.++..++ +.+.|++.++ .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g-----~~ 154 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLADG-----RQ 154 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECCC-----CE
Confidence 000000000 000000000 0001123345666666666666788899999999998765 4577777665 57
Q ss_pred EEeCEEEEccCCCCCCCCCCC
Q 035902 127 YVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~~~~~g 147 (381)
+++|+||.|+|.++.+...-|
T Consensus 155 ~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 155 LRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred EEeCEEEEecCCCchhHHhcC
Confidence 999999999999966554333
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=107.20 Aligned_cols=137 Identities=20% Similarity=0.292 Sum_probs=84.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-----C-------------cCC-----CCCCCeeeecCCc
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-----L-------------WKK-----RAYDRMKLHLAKQ 57 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-----~-------------~~~-----~~~~~~~~~~~~~ 57 (381)
|+++||+|||||++|+++|..|++.|.+|+|||+.+.... . |.. ..+..+.......
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 3458999999999999999999999999999999864321 1 110 0011111110000
Q ss_pred -cc-----ccCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 58 -FC-----ELPHMPFPS-RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 58 -~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
.. .+....... .+.-...+..+.+.+.+.+.+.+...+++++|.++..++ +.+.+++.++ +.+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~a~ 157 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLADG-----TTLSAR 157 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECCC-----CEEEEe
Confidence 00 000000000 001124566777777777776643338899999997765 5677777665 579999
Q ss_pred EEEEccCCCCCCCC
Q 035902 131 YLVVATGENGLIPE 144 (381)
Q Consensus 131 ~vIlAtG~~~~~~~ 144 (381)
.||.|+|..+....
T Consensus 158 ~vI~AdG~~S~vr~ 171 (388)
T PRK07494 158 LVVGADGRNSPVRE 171 (388)
T ss_pred EEEEecCCCchhHH
Confidence 99999999865443
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=105.83 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=83.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCC----C-------CcCC--------CCCCCe--------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSA----S-------LWKK--------RAYDRM-------- 50 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g----~-------~~~~--------~~~~~~-------- 50 (381)
|+++||+||||||+|+++|+.|+++ |++|+|+|+..... + .+.. ..++.+
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 8889999999999999999999998 99999999952110 0 0000 001100
Q ss_pred --eeecCCccc--ccCCCCCCCCC-CCCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCce
Q 035902 51 --KLHLAKQFC--ELPHMPFPSRT-PTFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAY 124 (381)
Q Consensus 51 --~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 124 (381)
......... .+....+.... .....+..+.+.+.+.+.. .+++++++++++++..++ +.+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 000000000 00000000000 0123355666666666654 478889999999987654 5677777665
Q ss_pred EEEEeCEEEEccCCCCCCCC
Q 035902 125 EEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 125 ~~~~~d~vIlAtG~~~~~~~ 144 (381)
..+.+|+||.|+|.+..+.+
T Consensus 154 ~~~~a~~vI~AdG~~S~vr~ 173 (395)
T PRK05732 154 ETLTGRLLVAADGSHSALRE 173 (395)
T ss_pred CEEEeCEEEEecCCChhhHH
Confidence 57899999999999855443
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-10 Score=107.63 Aligned_cols=140 Identities=24% Similarity=0.318 Sum_probs=86.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------------CCCCe--------------eee-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR--------------AYDRM--------------KLH- 53 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~--------------~~~~~--------------~~~- 53 (381)
+++|+||||||+|+++|..|+++|++|+|||+.+......... ....+ ...
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 4899999999999999999999999999999886332110000 00000 000
Q ss_pred -cCCccccc--CCCC----C--------CC-CCCCCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEE
Q 035902 54 -LAKQFCEL--PHMP----F--------PS-RTPTFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVA 116 (381)
Q Consensus 54 -~~~~~~~~--~~~~----~--------~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~ 116 (381)
.......+ .... . .. ......++..+.+.+.+.+.+ .+++++++++++++..++ +...+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEE
Confidence 00000000 0000 0 00 001134556677787777765 478999999999998765 4455666
Q ss_pred eecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 117 KNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 117 ~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+...++..++++|+||.|+|.++.+.+
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~VR~ 192 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSAVRR 192 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchHHHH
Confidence 5533344468999999999999955443
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=103.38 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=90.0
Q ss_pred cEEEECCCHHHHHHHHHH--HhCCCCeEEEecCCCC--CC--CcCCCC--CCCeeeecCCcccc----cCCCC-CCCCCC
Q 035902 5 PVVIVGAGPAGLATSACL--NNLSVPNIILEREDCS--AS--LWKKRA--YDRMKLHLAKQFCE----LPHMP-FPSRTP 71 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l--~~~g~~v~lie~~~~~--g~--~~~~~~--~~~~~~~~~~~~~~----~~~~~-~~~~~~ 71 (381)
||+|||||+||+++|++| ++.|.+|+|||++... +. +|.... ...+..-....+.. .+... .....+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 7779999999998766 22 232110 00000000000000 00000 000001
Q ss_pred -CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCC
Q 035902 72 -TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGS 150 (381)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~ 150 (381)
....+..+.+++.+.+...+ ..++++.|.++.... ..+.+.+.+| ..++++.||.|+|..+....-.+...
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~--~~~~v~~~~g-----~~i~a~~VvDa~g~~~~~~~~~~~Q~ 152 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETG--DGVLVVLADG-----RTIRARVVVDARGPSSPKARPLGLQH 152 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecC--ceEEEEECCC-----CEEEeeEEEECCCcccccccccccce
Confidence 13567788888888887444 567889999998876 4556788887 68999999999997655333334444
Q ss_pred CCcceee
Q 035902 151 FEGEYMH 157 (381)
Q Consensus 151 ~~~~~~~ 157 (381)
+.|..+.
T Consensus 153 f~G~~v~ 159 (374)
T PF05834_consen 153 FYGWEVE 159 (374)
T ss_pred eEEEEEe
Confidence 5554433
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-10 Score=103.25 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=85.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC---C---CcCCC--------C-----------CCCeeeecCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA---S---LWKKR--------A-----------YDRMKLHLAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g---~---~~~~~--------~-----------~~~~~~~~~~~ 57 (381)
++||+||||||+|+++|..|++.|++|+|+|+.+... + .+... . ...+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 5899999999999999999999999999999887441 1 11100 0 00011100000
Q ss_pred ccccCCCCCCC----CCCCCCCHHHHHHHHHHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 58 FCELPHMPFPS----RTPTFVPRISFINYVDNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 58 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
... ..++.. .+.....+.++.+.+.+.+. ..+++++++++++++..+++...+.|++.++ +++++|.|
T Consensus 85 ~~~--~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-----~~~~~~~v 157 (388)
T PRK07045 85 LIA--SLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDG-----ERVAPTVL 157 (388)
T ss_pred EEE--EecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCC-----CEEECCEE
Confidence 000 011111 11112356677777776665 3578899999999998765333345777665 57999999
Q ss_pred EEccCCCCCCCC
Q 035902 133 VVATGENGLIPE 144 (381)
Q Consensus 133 IlAtG~~~~~~~ 144 (381)
|.|+|.+..+..
T Consensus 158 IgADG~~S~vR~ 169 (388)
T PRK07045 158 VGADGARSMIRD 169 (388)
T ss_pred EECCCCChHHHH
Confidence 999999955444
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-09 Score=101.43 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=78.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC---------CCCeeeec---C----CcccccCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-LWKKRA---------YDRMKLHL---A----KQFCELPHMPF 66 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-~~~~~~---------~~~~~~~~---~----~~~~~~~~~~~ 66 (381)
+||+|||||+||+.+|..+++.|.+|+|+|++...++ ...... ...+..-. . .....+.....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 6899999999999999999999999999998743221 111000 00000000 0 00000111100
Q ss_pred ---CC-CC-CCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 67 ---PS-RT-PTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 67 ---~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+. +. .....+..+...+++.+++. ++.+ +...++++..++++..+.|.+.++ ..+.|+.||+|||.+.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~I-le~~Vv~li~e~~g~V~GV~t~~G-----~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSL-FQGEVEDLILEDNDEIKGVVTQDG-----LKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEEecCCcEEEEEECCC-----CEEECCEEEEccCccc
Confidence 00 00 11345566777888777776 5565 455677776542234455777665 5799999999999995
Q ss_pred C
Q 035902 141 L 141 (381)
Q Consensus 141 ~ 141 (381)
.
T Consensus 155 ~ 155 (617)
T TIGR00136 155 R 155 (617)
T ss_pred C
Confidence 4
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.2e-10 Score=104.06 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=85.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC----CCcCCC--------------CCCCeeeecCCcccccCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA----SLWKKR--------------AYDRMKLHLAKQFCELPHMP 65 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g----~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 65 (381)
+||+||||||||++||+.|++.|++|+|+|+....+ +..... ....+....+..........
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999875332 111100 01111111111100000000
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEe-CCCCeEEEEEeecC----CCceEEEEeCEEEEccCCC
Q 035902 66 FPS-RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYD-ENAKAWIIVAKNTA----LDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 66 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~~v~~~~~~----~~~~~~~~~d~vIlAtG~~ 139 (381)
... .+-....+..+.+++.+.+.+.|++++.++ +.++... ...+.+.|+..... .++..+++|++||.|+|..
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 000 111136788888999999988899986664 6666432 12244556543211 1233579999999999999
Q ss_pred CCCCCCCCC
Q 035902 140 GLIPEVPGL 148 (381)
Q Consensus 140 ~~~~~~~g~ 148 (381)
+.+....|.
T Consensus 160 S~v~~~~g~ 168 (398)
T TIGR02028 160 SRVAKEIDA 168 (398)
T ss_pred hHHHHHhCC
Confidence 766543343
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=104.02 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=84.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC--C--C---C-----CcCC--------CCCCCeeee--cCC-c
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC--S--A---S-----LWKK--------RAYDRMKLH--LAK-Q 57 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~--~--g---~-----~~~~--------~~~~~~~~~--~~~-~ 57 (381)
|+.+||+||||||+|+++|..|++.|++|+|||+.+. . . + .+.. ..++.+... .+. .
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKR 80 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccce
Confidence 7778999999999999999999999999999998641 1 0 0 0000 011111000 000 0
Q ss_pred cc------ccCCCCCC-CCCCC---CCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 58 FC------ELPHMPFP-SRTPT---FVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 58 ~~------~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
+. ....+... ...+. ...+..+...+.+.++. .++++++++++++++.++ +...+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~g-----~~ 153 (384)
T PRK08849 81 LETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLESG-----AE 153 (384)
T ss_pred EEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECCC-----CE
Confidence 00 00000000 00011 12233455555444443 468899999999998765 4566888776 68
Q ss_pred EEeCEEEEccCCCCCCCCCCC
Q 035902 127 YVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~~~~~g 147 (381)
+++|.||.|+|..+......|
T Consensus 154 ~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 154 IEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred EEeeEEEEecCCCchhHHhcC
Confidence 999999999999976655433
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.2e-10 Score=103.34 Aligned_cols=136 Identities=23% Similarity=0.270 Sum_probs=89.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC-CCCCC-----CcCCC--------------------CCCCeeeecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE-DCSAS-----LWKKR--------------------AYDRMKLHLAK 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~-~~~g~-----~~~~~--------------------~~~~~~~~~~~ 56 (381)
.+||+||||||+|+++|..|++.|++|+|||+. ...-. ..... .+..+......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 489999999999999999999999999999998 21110 00000 01111111111
Q ss_pred c-ccccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCEE
Q 035902 57 Q-FCELPHMPFP-SRTPTFVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARYL 132 (381)
Q Consensus 57 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~v 132 (381)
. ...+...... ..+.....+.++...|.+.+...+ ++++++++|+.++.++ ...++++. +| +.++||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~dG-----~~~~a~ll 154 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSFDG-----ETLDADLL 154 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcCCC-----cEEecCEE
Confidence 0 1111111111 111234567888888888887765 8999999999999876 34447777 66 58999999
Q ss_pred EEccCCCCCCCCC
Q 035902 133 VVATGENGLIPEV 145 (381)
Q Consensus 133 IlAtG~~~~~~~~ 145 (381)
|.|.|.++.+.+.
T Consensus 155 VgADG~~S~vR~~ 167 (387)
T COG0654 155 VGADGANSAVRRA 167 (387)
T ss_pred EECCCCchHHHHh
Confidence 9999998554443
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=104.85 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=84.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-C--CCC--------CcCC--------CCCCCe-----------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED-C--SAS--------LWKK--------RAYDRM----------- 50 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~--~g~--------~~~~--------~~~~~~----------- 50 (381)
|+.+||+||||||+|+++|..|++.|++|+|+|+.. . ++. .... ..++.+
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 556899999999999999999999999999999862 1 110 0000 001111
Q ss_pred eeecCCcccccCCCCCCC----CCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceE
Q 035902 51 KLHLAKQFCELPHMPFPS----RTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYE 125 (381)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~ 125 (381)
........ ....+.... .+........+.+.+.+.+.+. +++++++++|+++..++ ....|++.++ +
T Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~g-----~ 153 (405)
T PRK08850 82 EVWEQDSF-ARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDNG-----Q 153 (405)
T ss_pred EEEeCCCC-ceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECCC-----C
Confidence 11000000 000000000 0011123445666666655553 68889999999998765 4456777665 5
Q ss_pred EEEeCEEEEccCCCCCCCCCCC
Q 035902 126 EYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 126 ~~~~d~vIlAtG~~~~~~~~~g 147 (381)
.+++|.||.|+|..+...+.-|
T Consensus 154 ~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 154 ALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred EEEeCEEEEeCCCCChhHHHcC
Confidence 7999999999999866554433
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=104.85 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=85.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC---CcCCC----------------CCCCeeee--cCCc---c
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS---LWKKR----------------AYDRMKLH--LAKQ---F 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~---~~~~~----------------~~~~~~~~--~~~~---~ 58 (381)
.+||+|||||++|+++|+.|++.|.+|+|+|+...... .|... ....+... .+.. +
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 48999999999999999999999999999999865421 22110 00000000 0000 0
Q ss_pred cccC--CCC---CCCCCCC---CCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 59 CELP--HMP---FPSRTPT---FVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 59 ~~~~--~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
.... ... .....+. ...+..+.+.+.+.+++.+ +.++ ++++.++..++ +.+.+++.++ .++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~g-----~~~~a 156 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLADG-----QVLRA 156 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECCC-----CEEEe
Confidence 0000 000 0001111 1346677888877777766 7777 88899887655 4566777665 57999
Q ss_pred CEEEEccCCCCCCCCCCC
Q 035902 130 RYLVVATGENGLIPEVPG 147 (381)
Q Consensus 130 d~vIlAtG~~~~~~~~~g 147 (381)
|+||.|+|.+......-|
T Consensus 157 ~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 157 DLVVGADGAHSWVRSQAG 174 (388)
T ss_pred eEEEEeCCCCchHHHhcC
Confidence 999999999865544333
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-10 Score=104.02 Aligned_cols=136 Identities=18% Similarity=0.265 Sum_probs=84.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC----CC---------------------CcCCC------CCCCee
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS----AS---------------------LWKKR------AYDRMK 51 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~----g~---------------------~~~~~------~~~~~~ 51 (381)
++||+|||||++|+++|..|++.|++|+|||+.... ++ .|..- .+..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 489999999999999999999999999999987521 10 01000 000000
Q ss_pred ee-cCCcccccCCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE
Q 035902 52 LH-LAKQFCELPHMPFPS-RTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV 128 (381)
Q Consensus 52 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 128 (381)
.. .......+....... .......+..+.+.+.+.+... +++++++++++++..++ +.+.|.+.++ .+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ 157 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLADG-----EEIQ 157 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECCC-----CEEE
Confidence 00 000000000000000 0011234566777777766665 88888999999987665 5567777665 5799
Q ss_pred eCEEEEccCCCCCCCCC
Q 035902 129 ARYLVVATGENGLIPEV 145 (381)
Q Consensus 129 ~d~vIlAtG~~~~~~~~ 145 (381)
+|.||.|+|..+.+...
T Consensus 158 a~~vI~AdG~~S~vR~~ 174 (391)
T PRK08020 158 AKLVIGADGANSQVRQM 174 (391)
T ss_pred eCEEEEeCCCCchhHHH
Confidence 99999999999665443
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=100.91 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=79.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC----CC-C-cCCC---CCCCeeeec------C---CcccccC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS----AS-L-WKKR---AYDRMKLHL------A---KQFCELP 62 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~----g~-~-~~~~---~~~~~~~~~------~---~~~~~~~ 62 (381)
|+.++|+|||||++|+++|..|++.|++|+|+|+.+.. |. . .... .+..+.... + ..+....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 55689999999999999999999999999999997632 11 0 0000 000000000 0 0000000
Q ss_pred CCCC-CCCCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 63 HMPF-PSRTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 63 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
.... ....+ .......+.+.+.+.+ .+..++++++|+++..++ +.+++++.++ .++++|.||.|.|..+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad~vIgADG~~S 154 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDG--DRVTARFADG-----RRETADLLVGADGGRS 154 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEEEEECCC-----CEEEeCEEEECCCCCc
Confidence 0000 00001 1123344444443322 245689999999998765 5567887776 6799999999999985
Q ss_pred CCC
Q 035902 141 LIP 143 (381)
Q Consensus 141 ~~~ 143 (381)
.+.
T Consensus 155 ~vR 157 (386)
T PRK07236 155 TVR 157 (386)
T ss_pred hHH
Confidence 543
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=103.19 Aligned_cols=138 Identities=16% Similarity=0.222 Sum_probs=82.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-----CC---cCC--------CCCC----------CeeeecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-----SL---WKK--------RAYD----------RMKLHLAK 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-----~~---~~~--------~~~~----------~~~~~~~~ 56 (381)
.+||+|||||++|+++|..|++.|++|+|+|+.+... .. +.. .... .+......
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3899999999999999999999999999999986432 10 000 0000 00010000
Q ss_pred --cccccCCCCCCCCCCC-CCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 57 --QFCELPHMPFPSRTPT-FVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 57 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
....+........... ......+.+.+.+.+.+. +++++++++++++..++ +.+.+++.++ ++..++++|.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~--~~~~~i~adlv 173 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLEIE--GKQQTLQSKLV 173 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEccC--CcceEEeeeEE
Confidence 0001110000000001 112345666666666554 68889999999997765 4566776542 12247999999
Q ss_pred EEccCCCCCCCC
Q 035902 133 VVATGENGLIPE 144 (381)
Q Consensus 133 IlAtG~~~~~~~ 144 (381)
|.|+|..+.+..
T Consensus 174 IgADG~~S~vR~ 185 (415)
T PRK07364 174 VAADGARSPIRQ 185 (415)
T ss_pred EEeCCCCchhHH
Confidence 999999865544
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-10 Score=94.08 Aligned_cols=124 Identities=16% Similarity=0.235 Sum_probs=79.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCccc------------------------
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFC------------------------ 59 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~------------------------ 59 (381)
.+|+|||+|++|++||+.|+..|++|+||||+.-+||-......+....+....++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 46999999999999999999999999999999877774333222222222222221
Q ss_pred ----ccCCC---CCCCCCC--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 60 ----ELPHM---PFPSRTP--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 60 ----~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
.+... +.++..+ ..+.-+.+.+++. . +++++++++|+.+...+ +.|+++++++. ....+|
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA---t--dL~V~~~~rVt~v~~~~--~~W~l~~~~g~----~~~~~d 150 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA---T--DLTVVLETRVTEVARTD--NDWTLHTDDGT----RHTQFD 150 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHHh---c--cchhhhhhhhhhheecC--CeeEEEecCCC----cccccc
Confidence 11111 1111111 1122233333222 2 67889999999998875 78999997662 578899
Q ss_pred EEEEccCC
Q 035902 131 YLVVATGE 138 (381)
Q Consensus 131 ~vIlAtG~ 138 (381)
.||||.=.
T Consensus 151 ~vvla~PA 158 (331)
T COG3380 151 DVVLAIPA 158 (331)
T ss_pred eEEEecCC
Confidence 99998643
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-10 Score=103.85 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=84.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC------cCC--------CCCC----------CeeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL------WKK--------RAYD----------RMKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~------~~~--------~~~~----------~~~~~~~~~~ 58 (381)
..||+|||||++|+++|..|++.|++|+|+|+.+..+.. +.. ...+ .+.......-
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 489999999999999999999999999999998754321 100 0000 0000000000
Q ss_pred cccCCCCCCC------CCC-CCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 59 CELPHMPFPS------RTP-TFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 59 ~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
......+... ..+ ....+.++.+.+.+.+.+. ++++++++++.++..++ +.+.+.+.++ .++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad 156 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQG-----NRWTGD 156 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcCC-----CEEecC
Confidence 0000000000 001 1245667777777777665 48889999999998654 4566776665 579999
Q ss_pred EEEEccCCCCCCC
Q 035902 131 YLVVATGENGLIP 143 (381)
Q Consensus 131 ~vIlAtG~~~~~~ 143 (381)
.||.|+|.++...
T Consensus 157 ~vV~AdG~~S~~r 169 (396)
T PRK08163 157 ALIGCDGVKSVVR 169 (396)
T ss_pred EEEECCCcChHHH
Confidence 9999999985543
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=102.73 Aligned_cols=138 Identities=18% Similarity=0.273 Sum_probs=83.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-----CcCC---------CC-----------CCCeeeecCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-----LWKK---------RA-----------YDRMKLHLAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-----~~~~---------~~-----------~~~~~~~~~~~ 57 (381)
++||+|||||++|+++|+.|++.|++|+|+|+.+.... .+.. .. +..+.......
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 59999999999999999999999999999998753311 1110 00 01111111111
Q ss_pred cc---ccCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 58 FC---ELPHMPFPSRTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 58 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
.. .+.....+..+.....+..+.+.+.+.+.+. ++++++++++.++..++ +....+.+... ++...+++|.||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~--~g~~~i~a~~vI 162 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTP--DGPGEIRADLVV 162 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcC--CCcEEEEeCEEE
Confidence 00 1111111111112345667888887777654 78899999999998765 22222344321 112479999999
Q ss_pred EccCCCCCCC
Q 035902 134 VATGENGLIP 143 (381)
Q Consensus 134 lAtG~~~~~~ 143 (381)
.|+|......
T Consensus 163 ~AdG~~S~vr 172 (407)
T PRK06185 163 GADGRHSRVR 172 (407)
T ss_pred ECCCCchHHH
Confidence 9999985443
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.9e-10 Score=102.19 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=83.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC--------CcC--C---------CCCCCeeeecC---Cc--ccc
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS--------LWK--K---------RAYDRMKLHLA---KQ--FCE 60 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~--------~~~--~---------~~~~~~~~~~~---~~--~~~ 60 (381)
||+|||||++|+++|+.|++.|++|+|+|+.+..+. ... . ...+.+..... .. +..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999875321 000 0 00001100000 00 000
Q ss_pred cC-----CCCCCC-C---CCCCCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 61 LP-----HMPFPS-R---TPTFVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 61 ~~-----~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
.. .++... . ......+..+.+.+.+.+.+.+ ++++++++|+++..++ +.+.+++.++ ..+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~~~ 153 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDDG-----QQLRAR 153 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECCC-----CEEEee
Confidence 00 000000 0 0112456678888888777776 8899999999998765 5566777665 569999
Q ss_pred EEEEccCCCCCC
Q 035902 131 YLVVATGENGLI 142 (381)
Q Consensus 131 ~vIlAtG~~~~~ 142 (381)
.||.|+|.....
T Consensus 154 ~vi~adG~~S~v 165 (385)
T TIGR01988 154 LLVGADGANSKV 165 (385)
T ss_pred EEEEeCCCCCHH
Confidence 999999988543
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=102.87 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=84.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC-----CCCCcCC-----C--------CCCCeeeecCCcc-cccCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC-----SASLWKK-----R--------AYDRMKLHLAKQF-CELPH 63 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~-----~g~~~~~-----~--------~~~~~~~~~~~~~-~~~~~ 63 (381)
.+||+||||||||+++|..|++.|++|+|+|+... .++.... . ....+....+... ..+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 48999999999999999999999999999998742 2221100 0 0011111111110 00000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC-CCeEEEEEeecC----CCceEEEEeCEEEEccCC
Q 035902 64 MPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN-AKAWIIVAKNTA----LDAYEEYVARYLVVATGE 138 (381)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~----~~~~~~~~~d~vIlAtG~ 138 (381)
...+..+-....+..+.++|.+.+.+.|++++.+ .+.+++...+ .+.+.|++.+.. .++..++++|.||.|+|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 0000000112678889999999898889988654 5777764321 244556654321 122357999999999998
Q ss_pred CCCCCC
Q 035902 139 NGLIPE 144 (381)
Q Consensus 139 ~~~~~~ 144 (381)
...+..
T Consensus 198 ~S~vrr 203 (450)
T PLN00093 198 NSRVAK 203 (450)
T ss_pred chHHHH
Confidence 855443
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=98.11 Aligned_cols=132 Identities=16% Similarity=0.250 Sum_probs=81.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC---------C-CcCC--------CCC-CCeeeecCCcccccCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA---------S-LWKK--------RAY-DRMKLHLAKQFCELPHM 64 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g---------~-~~~~--------~~~-~~~~~~~~~~~~~~~~~ 64 (381)
+||+||||||||+++|..|++. ++|+|+|+.+..+ + .+.. ... +......+. .+.....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~~~~ 79 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAVKTI 79 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-cceeeEe
Confidence 8999999999999999999999 9999999876321 1 1100 000 000000000 0000000
Q ss_pred CCC------CCCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCEEEEcc
Q 035902 65 PFP------SRTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARYLVVAT 136 (381)
Q Consensus 65 ~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~vIlAt 136 (381)
... ...+ ....+.++.+.+.+.. ..++++++++.+.++...+ +.|.+... ++ ...++++|+||.|+
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~g---~~~~i~a~~vV~Ad 153 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWRED--DGYHVIFRADG---WEQHITARYLVGAD 153 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcC--CEEEEEEecCC---cEEEEEeCEEEECC
Confidence 000 0001 1356777777777643 4578899999999988765 55777753 33 22479999999999
Q ss_pred CCCCCCC
Q 035902 137 GENGLIP 143 (381)
Q Consensus 137 G~~~~~~ 143 (381)
|......
T Consensus 154 G~~S~vr 160 (351)
T PRK11445 154 GANSMVR 160 (351)
T ss_pred CCCcHHh
Confidence 9985543
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=103.67 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=78.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCCee-----e--ecCCc----cc-----ccCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDRMK-----L--HLAKQ----FC-----ELPH 63 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~~-----~--~~~~~----~~-----~~~~ 63 (381)
|.++||+|||||+||+.||..+++.|.+|+|+|++. .+|............ . +.... .. .+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 456999999999999999999999999999999873 444311111000000 0 00000 00 0000
Q ss_pred CCC---CCC--CCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 64 MPF---PSR--TPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 64 ~~~---~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
... +.. ......+..+...+.+.+.+. ++.+ +..+|.++..++ +....|.+.++ ..+.|+.||+|||
T Consensus 82 ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~-grV~GV~t~dG-----~~I~Ak~VIlATG 154 (618)
T PRK05192 82 LNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVEN-GRVVGVVTQDG-----LEFRAKAVVLTTG 154 (618)
T ss_pred cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecC-CEEEEEEECCC-----CEEECCEEEEeeC
Confidence 000 000 001233455666666666654 6775 567788776654 23333666665 6899999999999
Q ss_pred CCC
Q 035902 138 ENG 140 (381)
Q Consensus 138 ~~~ 140 (381)
.+.
T Consensus 155 TFL 157 (618)
T PRK05192 155 TFL 157 (618)
T ss_pred cch
Confidence 974
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=100.53 Aligned_cols=132 Identities=15% Similarity=0.216 Sum_probs=83.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC-------CC---C-------------cCC-----CCCCCeeeecC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS-------AS---L-------------WKK-----RAYDRMKLHLA 55 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~-------g~---~-------------~~~-----~~~~~~~~~~~ 55 (381)
+||+|||||++|+++|..|++.|++|+|+|+.+.. +. . |.. ..+..+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 78999999999999999999999999999986311 10 0 100 00111111111
Q ss_pred Cc--ccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 56 KQ--FCELPHMPFPSRTPTFVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 56 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
.. ...+... ....+.-...+.++.+.+.+.+.+.+ +.++++++++++..++ +.+.+.+.+ .++++|.|
T Consensus 82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~------~~~~adlv 152 (374)
T PRK06617 82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDD------KQIKCNLL 152 (374)
T ss_pred CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcC------CEEeeCEE
Confidence 00 0011100 00001112457788888888777764 7788899999987765 455676643 37999999
Q ss_pred EEccCCCCCCCC
Q 035902 133 VVATGENGLIPE 144 (381)
Q Consensus 133 IlAtG~~~~~~~ 144 (381)
|.|.|..+.+.+
T Consensus 153 IgADG~~S~vR~ 164 (374)
T PRK06617 153 IICDGANSKVRS 164 (374)
T ss_pred EEeCCCCchhHH
Confidence 999999966554
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=103.26 Aligned_cols=140 Identities=19% Similarity=0.250 Sum_probs=85.3
Q ss_pred ccEEEECCCHHHHHHHHHHHh----CCCCeEEEecCC--CCC--------CCcCC----------------CCCCC----
Q 035902 4 VPVVIVGAGPAGLATSACLNN----LSVPNIILERED--CSA--------SLWKK----------------RAYDR---- 49 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~----~g~~v~lie~~~--~~g--------~~~~~----------------~~~~~---- 49 (381)
+||+||||||+|+++|+.|++ +|++|+|||+.+ ... +.+.. ..++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 689999999999999999998 799999999943 211 00000 00111
Q ss_pred -------eeeecCCc--ccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CccccccEEEEEEEe-----CCCCeE
Q 035902 50 -------MKLHLAKQ--FCELPHMPFPSRTPTFVPRISFINYVDNYVSQMG---INPRYHRSVESASYD-----ENAKAW 112 (381)
Q Consensus 50 -------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~i~~~-----~~~~~~ 112 (381)
+....... ...+........+....++..+.+.+.+.+.+.+ +++++++++.++... ++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 11000000 0001100000000112456677777777777654 889999999999753 112445
Q ss_pred EEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 113 IIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 113 ~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
+|++.++ +++++|+||.|.|....+.+.-|+
T Consensus 161 ~v~~~~g-----~~i~a~llVgADG~~S~vR~~~gi 191 (437)
T TIGR01989 161 HITLSDG-----QVLYTKLLIGADGSNSNVRKAANI 191 (437)
T ss_pred EEEEcCC-----CEEEeeEEEEecCCCChhHHHcCC
Confidence 6777665 689999999999999766654444
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=101.87 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=83.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC--C----CcCCC------------------CCCCeeeecCCc--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA--S----LWKKR------------------AYDRMKLHLAKQ-- 57 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g--~----~~~~~------------------~~~~~~~~~~~~-- 57 (381)
+||+|||||++|+++|+.|++.|++|+|+|+.+... + .|... ....+.......
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 479999999999999999999999999999876432 1 11110 011111110000
Q ss_pred ccccCCCCCCCCCC---CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEE
Q 035902 58 FCELPHMPFPSRTP---TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVV 134 (381)
Q Consensus 58 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIl 134 (381)
...+....+..... ....+..+.+.+.+.... +++++++++|.++..++ +.+.+.+.++ +.+++|.||.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~~d~vIg 152 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QVETIFDDSIATIDEHR--DGVRVTFERG-----TPRDFDLVIG 152 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-CeEEEeCCEEeEEEECC--CeEEEEECCC-----CEEEeCEEEE
Confidence 00011000111111 123456666666554433 68899999999998765 5577877776 5689999999
Q ss_pred ccCCCCCCCC
Q 035902 135 ATGENGLIPE 144 (381)
Q Consensus 135 AtG~~~~~~~ 144 (381)
|.|.++.+..
T Consensus 153 ADG~~S~vR~ 162 (391)
T PRK07588 153 ADGLHSHVRR 162 (391)
T ss_pred CCCCCccchh
Confidence 9999966654
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=99.49 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=81.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC------cCC--------C----------CCCCeeeecCCcccc
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL------WKK--------R----------AYDRMKLHLAKQFCE 60 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~------~~~--------~----------~~~~~~~~~~~~~~~ 60 (381)
+|+|||||++|+++|..|++.|++|+|+|+.+..... +.. . ....+........ .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 6999999999999999999999999999998754211 000 0 0011111111000 0
Q ss_pred cCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 61 LPHMPFPSR-TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 61 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....++... ......+..+.+.+.+.++ +..+++++++++++.++ +.+.+++.++ ..+++|.||.|.|..
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~~~~vigadG~~ 151 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKVTIHFADG-----ESEAFDLCIGADGIH 151 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcEEEEECCC-----CEEecCEEEECCCcc
Confidence 000111111 1123456677777666554 34678999999998654 5567777766 678999999999988
Q ss_pred CCCC
Q 035902 140 GLIP 143 (381)
Q Consensus 140 ~~~~ 143 (381)
+.+.
T Consensus 152 S~vR 155 (373)
T PRK06753 152 SKVR 155 (373)
T ss_pred hHHH
Confidence 5443
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.2e-09 Score=98.15 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=83.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC----C--cCC--------CCC----------CCeeeecCCc--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS----L--WKK--------RAY----------DRMKLHLAKQ-- 57 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~----~--~~~--------~~~----------~~~~~~~~~~-- 57 (381)
+||+|||||++|+++|+.|+++|++|+|||+.+.+.. . +.. ..+ ..+.......
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 4799999999999999999999999999999864321 0 000 000 0111000000
Q ss_pred ccccCC-CCCCCCCCC-CCCHHHHHHHHHHHHHH-hC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 58 FCELPH-MPFPSRTPT-FVPRISFINYVDNYVSQ-MG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 58 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
....+. ......++. ...+.++.+.|.+.+.+ .+ ..++++++|+++..++ ....+.+.++..++.+++++|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA--DVTVVFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC--CceEEEEeccCCCccceEEeeEEE
Confidence 000000 000001111 24577777777766644 45 3589999999998765 323455555433444689999999
Q ss_pred EccCCCCCCC
Q 035902 134 VATGENGLIP 143 (381)
Q Consensus 134 lAtG~~~~~~ 143 (381)
.|.|....+.
T Consensus 159 gADG~~S~vR 168 (413)
T PRK07538 159 GADGIHSAVR 168 (413)
T ss_pred ECCCCCHHHh
Confidence 9999985443
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=101.64 Aligned_cols=130 Identities=17% Similarity=0.248 Sum_probs=81.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC---CCcCCCCCCCeeeec--CCccc---c-cCCC-CCCCCCC-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA---SLWKKRAYDRMKLHL--AKQFC---E-LPHM-PFPSRTP- 71 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g---~~~~~~~~~~~~~~~--~~~~~---~-~~~~-~~~~~~~- 71 (381)
.+||+||||||||+++|..|++.|++|+|||+..... |.|... ...+.... ...+. . .+.. ......+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 3899999999999999999999999999999864332 234211 10010000 00000 0 0000 0000000
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 72 TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
....+..+.+.+.+.+.+.++.+ ++++|.++..++ ++...+...++ ..++++.||+|+|..+
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG-----~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDG-----RVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCC-----cEEECCEEEECCCcCh
Confidence 12567788888888888888886 778898887654 22222344444 6799999999999985
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=100.72 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=82.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCC----------cCC--------CCCCCe----------eeecC
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASL----------WKK--------RAYDRM----------KLHLA 55 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~----------~~~--------~~~~~~----------~~~~~ 55 (381)
||+||||||+|+++|..|+++| ++|+|+|+.+..... +.. ...+.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999997643110 000 000000 00000
Q ss_pred Ccc--cccCCCCCCCCCC-CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCE
Q 035902 56 KQF--CELPHMPFPSRTP-TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARY 131 (381)
Q Consensus 56 ~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 131 (381)
... ..+....+..... -...+.++.+.+.+.+.+ .+++++++++|+++..++ +.+++++.++ ..+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad~ 153 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDNG-----QQLRAKL 153 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECCC-----CEEEeeE
Confidence 000 0000000000000 124467788888887777 489999999999998765 5567777665 5799999
Q ss_pred EEEccCCCCCC
Q 035902 132 LVVATGENGLI 142 (381)
Q Consensus 132 vIlAtG~~~~~ 142 (381)
||.|+|.+..+
T Consensus 154 vV~AdG~~S~v 164 (382)
T TIGR01984 154 LIAADGANSKV 164 (382)
T ss_pred EEEecCCChHH
Confidence 99999988543
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=100.71 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+.+.+.+.+++.|++++.+++|+++..++ +.++ |.+.++ + +++|.||+|+|.+
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g-----~-i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDG-----E-IRADRVVLAAGAW 202 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTE-----E-EEECEEEE--GGG
T ss_pred cccchhhhhHHHHHHhhhhccccccccchhhcc--ccccccccccc-----c-cccceeEeccccc
Confidence 456788888888888899999999999999987 6677 888775 5 9999999999998
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=101.53 Aligned_cols=137 Identities=21% Similarity=0.371 Sum_probs=84.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------CCCCCe----------eee-cCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--------------RAYDRM----------KLH-LAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--------------~~~~~~----------~~~-~~~~ 57 (381)
++||+||||||+|+++|..|++.|++|+|||+.+......+. .....+ ... ....
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 479999999999999999999999999999998754221100 000000 000 0000
Q ss_pred ccccCCCCCC-CCCCC--CCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 58 FCELPHMPFP-SRTPT--FVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 58 ~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
...+...+.. ..++. ...+..+.+++.+.+.+. ++++++++++.++..++ +.+.+++.+.. +..++++|+||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~--g~~~i~ad~vV 178 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPD--GPYTLEADWVI 178 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCC--CcEEEEeCEEE
Confidence 0011100000 01111 145667778888877765 68899999999998765 44555554321 12479999999
Q ss_pred EccCCCCCCC
Q 035902 134 VATGENGLIP 143 (381)
Q Consensus 134 lAtG~~~~~~ 143 (381)
.|+|.++.+.
T Consensus 179 gADG~~S~vR 188 (547)
T PRK08132 179 ACDGARSPLR 188 (547)
T ss_pred ECCCCCcHHH
Confidence 9999885543
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-09 Score=99.94 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=82.2
Q ss_pred EEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeee-----------ecCC--c----------------
Q 035902 7 VIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKL-----------HLAK--Q---------------- 57 (381)
Q Consensus 7 vIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~-----------~~~~--~---------------- 57 (381)
+|||||++|++||+.++++|.+|+|+|++..+|+.+....-..+.. ..+. .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 5999999999999999999999999999988776432111000000 0000 0
Q ss_pred ccccCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 58 FCELPHMPFP-----SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 58 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
++.-...++. ..++.......+.+.+.+.+++.++++++++.|.++..++ +.|.+.++ + ..+.+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~-~-----~~i~ad~V 152 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETS-G-----GEYEADKV 152 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEEC-C-----cEEEcCEE
Confidence 0000000000 0111222356788888888888899999999999997654 56666663 2 46899999
Q ss_pred EEccCCC
Q 035902 133 VVATGEN 139 (381)
Q Consensus 133 IlAtG~~ 139 (381)
|+|+|..
T Consensus 153 IlAtG~~ 159 (400)
T TIGR00275 153 ILATGGL 159 (400)
T ss_pred EECCCCc
Confidence 9999975
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=95.83 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCC-CcCCCC-CCCeeeec-CCcccccCCCCCCCC--CCCCCCH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSAS-LWKKRA-YDRMKLHL-AKQFCELPHMPFPSR--TPTFVPR 76 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 76 (381)
++||+|||||++|++||+.|++. |.+|+|||++...|| .|.... +..+.... ...++.....++... +......
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 48999999999999999999986 899999999887765 554322 11111110 111111112222111 1111123
Q ss_pred HHHHHHHHHHH-HHhCCccccccEEEEEEEeCCCCeEEEEE------eecCC---CceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYV-SQMGINPRYHRSVESASYDENAKAWIIVA------KNTAL---DAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~------~~~~~---~~~~~~~~d~vIlAtG~~ 139 (381)
.++.+.+.+.+ ++.+++++.++.+.++..++ +....+.+ .++.. .+...+++++||+|||..
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 34445555444 45688999999999887754 22222332 12211 234579999999999965
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-09 Score=97.58 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=81.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC---C---C-CcCCC-------------------CCCCeeeecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS---A---S-LWKKR-------------------AYDRMKLHLAK 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~---g---~-~~~~~-------------------~~~~~~~~~~~ 56 (381)
++||+||||||+|+++|+.|++.|++|+|+|+.+.. + . ..... ....+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 589999999999999999999999999999998631 1 1 00000 01111111111
Q ss_pred cccccCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCE
Q 035902 57 QFCELPHMPFPSRT--P--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARY 131 (381)
Q Consensus 57 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~ 131 (381)
... ..+++... . ....+.++.+.+.+.+...+++++++++++++...+. ..-.|+.. ++ +..++++|+
T Consensus 82 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~~~V~~~~~G---~~~~i~ad~ 154 (392)
T PRK08243 82 RRH---RIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDS-DRPYVTYEKDG---EEHRLDCDF 154 (392)
T ss_pred EEE---EeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC-CceEEEEEcCC---eEEEEEeCE
Confidence 100 11111110 0 0123445555565555667889999999998875221 23335553 33 335799999
Q ss_pred EEEccCCCCCCCC
Q 035902 132 LVVATGENGLIPE 144 (381)
Q Consensus 132 vIlAtG~~~~~~~ 144 (381)
||.|.|....+..
T Consensus 155 vVgADG~~S~vR~ 167 (392)
T PRK08243 155 IAGCDGFHGVSRA 167 (392)
T ss_pred EEECCCCCCchhh
Confidence 9999999966554
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-09 Score=95.92 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=79.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC---Cc--CCC-------------------CCCCeeeecCCc--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS---LW--KKR-------------------AYDRMKLHLAKQ-- 57 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~---~~--~~~-------------------~~~~~~~~~~~~-- 57 (381)
+||+|||||++|+++|..|++.|++|+|||+.+.... .. ... ....+.......
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 5899999999999999999999999999998864421 00 000 011111111100
Q ss_pred ccccCCC-CCCCCCC--C-CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 58 FCELPHM-PFPSRTP--T-FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 58 ~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
....... +....+. . ...+..+.+.+.+.. ..+++++++++|++++.++ +...+++.++ .++++|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~dg-----~~~~adlvI 153 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDG--DSVRVTFERA-----AAREFDLVI 153 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecC--CeEEEEECCC-----CeEEeCEEE
Confidence 0000000 0000000 0 112445555443322 3478899999999997654 5566777776 578999999
Q ss_pred EccCCCCCCCC
Q 035902 134 VATGENGLIPE 144 (381)
Q Consensus 134 lAtG~~~~~~~ 144 (381)
.|.|....+..
T Consensus 154 gADG~~S~vR~ 164 (372)
T PRK05868 154 GADGLHSNVRR 164 (372)
T ss_pred ECCCCCchHHH
Confidence 99999855543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=74.10 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=65.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVD 84 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (381)
+|+|||||+.|+.+|..|++.|.+|+|+++++.+.. .-..++..+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 589999999999999999999999999999874320 11247788888
Q ss_pred HHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec
Q 035902 85 NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT 119 (381)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~ 119 (381)
+.+++.|+++++++.+.++..+++ + ++|++++|
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~~-~-~~V~~~~g 80 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDGD-G-VEVTLEDG 80 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETT-S-EEEEEETS
T ss_pred HHHHHCCCEEEeCCEEEEEEEeCC-E-EEEEEecC
Confidence 889888999999999999998863 3 55777664
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-09 Score=96.70 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...++...+.+.+.+.|..++++++|.++...++ +.+.+.+.++ +.. ++|+.||.|.|..
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g~~~~~~~~g---~~~-~~ak~Vin~AGl~ 210 (429)
T COG0579 151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSD-GVFVLNTSNG---EET-LEAKFVINAAGLY 210 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-ceEEEEecCC---cEE-EEeeEEEECCchh
Confidence 3445666777777777999999999999999762 3566667666 222 9999999999987
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-09 Score=101.37 Aligned_cols=142 Identities=22% Similarity=0.306 Sum_probs=84.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCC------CcCC------------------CCCCCeeeecCC-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSAS------LWKK------------------RAYDRMKLHLAK- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~------~~~~------------------~~~~~~~~~~~~- 56 (381)
++||+||||||+|+++|..|++. |++|+|||+.+.... .+.. .....+....+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 58999999999999999999995 999999998753211 0000 000011100000
Q ss_pred ----ccc---ccCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHhC--CccccccEEEEEEEeCCC-CeEEEEEeecC---C
Q 035902 57 ----QFC---ELPHMPFP-SRTP-TFVPRISFINYVDNYVSQMG--INPRYHRSVESASYDENA-KAWIIVAKNTA---L 121 (381)
Q Consensus 57 ----~~~---~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~~~~~~-~~~~v~~~~~~---~ 121 (381)
... ........ ..++ ...++..+.+.+.+.+.+.+ +.++++++++++..+++. ...++++.+.. .
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 000 00000000 0011 13456667788888777765 467889999999876421 23456665431 2
Q ss_pred CceEEEEeCEEEEccCCCCCCCC
Q 035902 122 DAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 122 ~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++++|+||.|.|.++.+.+
T Consensus 192 g~~~tv~A~~lVGaDGa~S~VR~ 214 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRVRK 214 (634)
T ss_pred CceEEEEeCEEEECCCCchHHHH
Confidence 33468999999999999955443
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-10 Score=107.46 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=35.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeee---------cCCcccccC----CCC--CCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLH---------LAKQFCELP----HMP--FPSR 69 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~----~~~--~~~~ 69 (381)
||||||||++|++||+.+++.|.+|+|||+...+||............. ....+.... ..+ ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999999986544322111000 000000000 000 0000
Q ss_pred CC--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 70 TP--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 70 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+. .......+...+.+.+.+.|+++++++.+.++..++ +....|.+.+.. +..+++++.+|.|||-.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~~~--g~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVETKS--GRKEIRAKVFIDATGDG 149 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc-cccccccccccc--ccccccccccccccccc
Confidence 00 123344555666777777899999999999998865 233445555421 24789999999999954
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.3e-09 Score=95.67 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+.+.+++++.+++|+++..++ +.+.|.++++ .+++|.||+|+|.+
T Consensus 147 ~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g------~~~a~~vV~A~G~~ 203 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAELLFNEPVTAIEADG--DGVTVTTADG------TYEAKKLVVSAGAW 203 (376)
T ss_pred cHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeEEEEeCCC------EEEeeEEEEecCcc
Confidence 334555556666667799999999999998865 4566766553 58999999999998
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=89.84 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=87.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC---CCC--------------------------cCCC-CCCC---
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS---ASL--------------------------WKKR-AYDR--- 49 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~---g~~--------------------------~~~~-~~~~--- 49 (381)
..+++|||||..|+++|++|+++|.++.++|+.+.+ |+. |+.. ...+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~~ 86 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKL 86 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhceee
Confidence 378999999999999999999999999999987521 110 1100 0000
Q ss_pred ----eee--ecC------------------------Ccc-cccC-CCCCCCCCC-------CCCCHHHHHHHHHHHHHHh
Q 035902 50 ----MKL--HLA------------------------KQF-CELP-HMPFPSRTP-------TFVPRISFINYVDNYVSQM 90 (381)
Q Consensus 50 ----~~~--~~~------------------------~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 90 (381)
+.+ ..+ ... -.++ ..++++.+. +.......++.++..+++.
T Consensus 87 ~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~ 166 (399)
T KOG2820|consen 87 HCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAREL 166 (399)
T ss_pred cccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHc
Confidence 000 000 000 0112 233444333 3445667888899999999
Q ss_pred CCccccccEEEEEEEeCCCC-eEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 91 GINPRYHRSVESASYDENAK-AWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 91 ~~~~~~~~~v~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
|+.++.+.+|..+...++.+ ...|.+.++ ..+.++.+|+++|++
T Consensus 167 G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g-----s~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 167 GVIFRDGEKVKFIKFVDEEGNHVSVQTTDG-----SIYHAKKIIFTVGAW 211 (399)
T ss_pred CeEEecCcceeeEeeccCCCceeEEEeccC-----CeeecceEEEEecHH
Confidence 99999999999888654333 334667776 679999999999999
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=96.22 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.+...+...+.+.|+.++.+++|+++..++ +.|.+.+.+...++...++++.||+|+|.+
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 343444555677799999999999998764 567787776333444679999999999998
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=96.58 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..+...+...+.+.|..++.+++|.++..++ +.|.|.+.++. ++...++++.||.|+|.+
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~-g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDAD-GETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeCC-CCEEEEEecEEEECCCcc
Confidence 3444455566777899999999999998765 56778777754 455679999999999998
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=94.42 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=78.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC------CC-CcCCC-------------------CCCCeeeecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS------AS-LWKKR-------------------AYDRMKLHLAK 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~------g~-~~~~~-------------------~~~~~~~~~~~ 56 (381)
.+||+|||||++|+++|..|++.|++|+|||+.+.. +. ....+ ....+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 489999999999999999999999999999998741 11 10000 00111110000
Q ss_pred cccccCCCCCCCCC---CC-CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCE
Q 035902 57 QFCELPHMPFPSRT---PT-FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARY 131 (381)
Q Consensus 57 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~ 131 (381)
... ..++.... +. ......+.+.+.+.+...++.++++++++.+...+. ....|++. ++ +...+++|.
T Consensus 82 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~~~V~~~~~g---~~~~i~adl 154 (390)
T TIGR02360 82 QRF---RIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DRPYVTFERDG---ERHRLDCDF 154 (390)
T ss_pred EEE---EEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-CccEEEEEECC---eEEEEEeCE
Confidence 000 01111100 00 113445556666666666878888887776644221 22336664 43 224799999
Q ss_pred EEEccCCCCCCCC
Q 035902 132 LVVATGENGLIPE 144 (381)
Q Consensus 132 vIlAtG~~~~~~~ 144 (381)
||.|.|.+..+..
T Consensus 155 vIGADG~~S~VR~ 167 (390)
T TIGR02360 155 IAGCDGFHGVSRA 167 (390)
T ss_pred EEECCCCchhhHH
Confidence 9999999855443
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=76.18 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=40.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhh
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKF 220 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~ 220 (381)
+++|||+|.+|+|+|..|++.|.+|+++.|++ .++|..+.+....+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~~~~~~~~~~~ 49 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFDPDAAKILEEY 49 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSSHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcCHHHHHHHHHH
Confidence 68999999999999999999999999999999 66666666555554333
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-09 Score=96.70 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+.+.+.+.+++.|++++++++|.++...+ +.+.|.+.++ .+.+|.||+|+|.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~g------~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGVVVRTTQG------EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeEEEEECCC------EEEeCEEEECCCcch
Confidence 45667777777788899999999999988755 4566666542 699999999999983
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=95.02 Aligned_cols=138 Identities=18% Similarity=0.190 Sum_probs=84.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC------CcCC--------CCCCC----------eeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS------LWKK--------RAYDR----------MKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~------~~~~--------~~~~~----------~~~~~~~~~ 58 (381)
+.+|+|||||++|+++|..|++.|++|+|+|+.+.... .+.. ..++. +........
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~ 81 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA 81 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCc
Confidence 37899999999999999999999999999998864321 0100 00000 000000000
Q ss_pred ---cccCCCCCC-C--CCCC-CCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 59 ---CELPHMPFP-S--RTPT-FVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 59 ---~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
......... . ..+. ...+..+.+.|.+.+.+ .++.++++++|+++..++ +.+.+++.++. +.+.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~~~--~~~~~~ad 157 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIRTN--SVETVSAA 157 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEeCC--CCcEEecC
Confidence 000000000 0 0011 23567788888777655 478899999999997654 45556654331 12568999
Q ss_pred EEEEccCCCCCCCC
Q 035902 131 YLVVATGENGLIPE 144 (381)
Q Consensus 131 ~vIlAtG~~~~~~~ 144 (381)
.||.|.|....+..
T Consensus 158 lvIgADG~~S~vR~ 171 (400)
T PRK06475 158 YLIACDGVWSMLRA 171 (400)
T ss_pred EEEECCCccHhHHh
Confidence 99999999955543
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-09 Score=96.57 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=74.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEe-cCCCCCCCcCCCCCCCe---------------eeecCCc-ccccCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILE-REDCSASLWKKRAYDRM---------------KLHLAKQ-FCELPHMPFP 67 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie-~~~~~g~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~ 67 (381)
||+|||||+||+.||+.+++.|.+|+|+. +.+.++........... ....... ...+...+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 33433332211100000 0000000 0000000000
Q ss_pred C---CCC--CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 68 S---RTP--TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 68 ~---~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
. ... ....+..+.+++++.++. .++.+ ...+|.++..++ .....|.+.++ ..+.+|.||+|||++
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~-~~v~GV~~~~g-----~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVEN-GKVKGVVTKDG-----EEIEADAVVLATGTF 151 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECT-TEEEEEEETTS-----EEEEECEEEE-TTTG
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecC-CeEEEEEeCCC-----CEEecCEEEEecccc
Confidence 0 111 135677888888888876 56665 577899998865 34556777776 789999999999994
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=95.73 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=77.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCC------cCCC--------CCCCee---e--ecC--CcccccC
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASL------WKKR--------AYDRMK---L--HLA--KQFCELP 62 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~------~~~~--------~~~~~~---~--~~~--~~~~~~~ 62 (381)
+|+|||||++|+++|..|++.| ++|+|+|+.+..... +... ....+. . ... ..++.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999998754321 1100 000000 0 000 0000000
Q ss_pred --------CCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 63 --------HMPFPSRTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 63 --------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
........+ ....+.++.+.+...+. ...++++++|.++..++ ..+.+.+.++ ..+++|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~ad~vV 152 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQVLFTDG-----TEYRCDLLI 152 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEEEEEcCC-----CEEEeeEEE
Confidence 000000111 12346666666655443 34578899999998765 4577887776 579999999
Q ss_pred EccCCCCC
Q 035902 134 VATGENGL 141 (381)
Q Consensus 134 lAtG~~~~ 141 (381)
+|+|.+..
T Consensus 153 gADG~~S~ 160 (414)
T TIGR03219 153 GADGIKSA 160 (414)
T ss_pred ECCCccHH
Confidence 99999854
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-08 Score=92.88 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=83.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcC--CC----CCCC------ee-----------------ee-
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWK--KR----AYDR------MK-----------------LH- 53 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~--~~----~~~~------~~-----------------~~- 53 (381)
||+|||||.+|++||+.++++| .+|+|+|+....+|.-. .. .... .. .+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 99999999876654211 00 0000 00 00
Q ss_pred --------cC---CcccccCCCCC-------CC--CCC-------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEe
Q 035902 54 --------LA---KQFCELPHMPF-------PS--RTP-------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYD 106 (381)
Q Consensus 54 --------~~---~~~~~~~~~~~-------~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 106 (381)
.. ..++. ....+ .. ..+ .......+.+.+.+.+++.++++++++.++++..+
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEEC
Confidence 00 00111 00000 00 000 11234578888888888899999999999999875
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 107 ENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 107 ~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++.....+...+. .+....+.++.||+|+|....
T Consensus 160 ~~g~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 160 DQGTVVGVVVKGK-GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCcEEEEEEEeC-CCeEEEEecceEEEecCCCCC
Confidence 4333333444432 122346789999999998743
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-08 Score=94.37 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=81.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC--CCCC--cCCC---CCCCe---e--eecCCc------------
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC--SASL--WKKR---AYDRM---K--LHLAKQ------------ 57 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~--~g~~--~~~~---~~~~~---~--~~~~~~------------ 57 (381)
.++||+|||+|++|++||+.+++.|.+|+|||+... .||. +... ..... . ......
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 469999999999999999999999999999999863 3441 1110 00000 0 000000
Q ss_pred ------------------ccccCCCCCCCCC------C--C---CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 58 ------------------FCELPHMPFPSRT------P--T---FVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 58 ------------------~~~~~~~~~~~~~------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
++.-...++.... . . ......+...+.+.+++.++++++++.++++..++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~- 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD- 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-
Confidence 0000000110000 0 0 00134677777788888899999999999998754
Q ss_pred CCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 109 AKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 109 ~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.....+...+ ..++...++++.||+|||..
T Consensus 162 g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 162 GRFVGARAGS-AAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred CeEEEEEEEc-cCCceEEEECCEEEECCCCC
Confidence 2333344421 11233578999999999976
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=93.77 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=82.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC----CCeEEEecCCCCCC---------------------CcCCCC--CCCeeeecC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS----VPNIILEREDCSAS---------------------LWKKRA--YDRMKLHLA 55 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g----~~v~lie~~~~~g~---------------------~~~~~~--~~~~~~~~~ 55 (381)
++||+||||||+|+++|..|++.| ++|+|+|+.+.... .|.... +..+.....
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 489999999999999999999987 47999998742110 111100 111111100
Q ss_pred Ccc----cccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCE
Q 035902 56 KQF----CELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARY 131 (381)
Q Consensus 56 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 131 (381)
... +....+..+. ..-...+..+.+.|.+.+...++.++++++++++..+. ..+++++.++. +.+++++|+
T Consensus 91 ~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v~~~~~~--g~~~i~a~l 165 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTLALGTPQ--GARTLRARI 165 (398)
T ss_pred CCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEEEECCCC--cceEEeeeE
Confidence 000 0001111100 01124567888888888888888899999999887654 55667665431 125799999
Q ss_pred EEEccCC
Q 035902 132 LVVATGE 138 (381)
Q Consensus 132 vIlAtG~ 138 (381)
||.|+|.
T Consensus 166 vIgADG~ 172 (398)
T PRK06996 166 AVQAEGG 172 (398)
T ss_pred EEECCCC
Confidence 9999995
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=93.50 Aligned_cols=136 Identities=21% Similarity=0.333 Sum_probs=81.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCC----ee----e-ecCCc----------------
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDR----MK----L-HLAKQ---------------- 57 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~----~~----~-~~~~~---------------- 57 (381)
||+|||+|.||++||+.++++|.+|+|+|+....++. |....+.. .. . +....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999876652 11100000 00 0 00000
Q ss_pred --------------ccccCCCCCCC----------------C------CC-----CCCCHHHHHHHHHHHHHHhCCcccc
Q 035902 58 --------------FCELPHMPFPS----------------R------TP-----TFVPRISFINYVDNYVSQMGINPRY 96 (381)
Q Consensus 58 --------------~~~~~~~~~~~----------------~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (381)
++.-...++.. . .. .......+...+.+.+++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~ 160 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRF 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeec
Confidence 00000000000 0 00 0124567888888889999999999
Q ss_pred ccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 97 HRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 97 ~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++.++++..++ ...-.+...+...++...++++.||+|||....
T Consensus 161 ~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 161 NTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp SEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 99999998875 233335555444456678999999999998854
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.6e-08 Score=92.77 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCC----Cee-----eecCCc--------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYD----RMK-----LHLAKQ-------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~----~~~-----~~~~~~-------------- 57 (381)
++||||||+|.+|++||+.+++.|.+|+|+|+....||. +....+. ... .+....
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 489999999999999999999999999999999877652 1110000 000 000000
Q ss_pred ----------------ccccCCCCC-----CC-------CCC--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeC
Q 035902 58 ----------------FCELPHMPF-----PS-------RTP--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107 (381)
Q Consensus 58 ----------------~~~~~~~~~-----~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 107 (381)
|+.-...++ +. ..+ .......+...+.+.+++.++++++++.++++..++
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~ 220 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKD 220 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecC
Confidence 000000000 00 000 011234567777777888899999999999997643
Q ss_pred CCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.....+..... .++...+.++.||+|+|..
T Consensus 221 -g~V~Gv~~~~~-~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 221 -GKVTGVKVKIN-GKETKTISSKAVVVTTGGF 250 (506)
T ss_pred -CEEEEEEEEeC-CCeEEEEecCeEEEeCCCc
Confidence 22222333321 1223579999999999976
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=92.43 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+.+.+.+.++..+++++.+++|+++..++ +.+.|.+.+ ..+.+|+||+|+|.+
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~------~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTK------GSYQANKLVVTAGAW 199 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCcc
Confidence 344666777777777899999999999998754 556666544 368999999999987
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-08 Score=91.56 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..+...+.+.+.+.|++++.+++|+++..++ +.+.+.+.++...+...+++|.||+|+|.+
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 3455566677778899999999999998755 556665544311112368999999999998
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=93.57 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=78.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||++|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~l 227 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKEV 227 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999886321 10 124566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++.++.+.++.....++...+...++ +.+.+.+|.||+|+|..|+...
T Consensus 228 ~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g---~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 228 ARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNG---EEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred HHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCC---ceEEEEeCEEEEeeCCccCCCC
Confidence 777888899999999999997521123322333333 2357999999999999987654
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-08 Score=88.72 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=79.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC--CCcCCCCCCCeeee-c-CCc-----------------------
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA--SLWKKRAYDRMKLH-L-AKQ----------------------- 57 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g--~~~~~~~~~~~~~~-~-~~~----------------------- 57 (381)
||+|||+|.||+++|+.|.+. ++|+|+.|.+.-. +.|.+.-....... . +..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999988 9999999986432 24444211110000 0 000
Q ss_pred -------ccccCCCCCCCCCC-------------------CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCC
Q 035902 58 -------FCELPHMPFPSRTP-------------------TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAK 110 (381)
Q Consensus 58 -------~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~ 110 (381)
+.--...+|..+.. .-.++.++...|...++. .+++++-+..+.++-.+++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 00001111111110 114566788888777764 788888888887776665211
Q ss_pred eEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 111 AWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 111 ~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.--+.+.+... +...+.++.||+|||..
T Consensus 168 ~~Gv~~~~~~~-~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 168 VAGVLVLNRNG-ELGTFRAKAVVLATGGL 195 (518)
T ss_pred EeEEEEecCCC-eEEEEecCeEEEecCCC
Confidence 11244433211 34679999999999976
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=92.06 Aligned_cols=100 Identities=10% Similarity=0.126 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. +.. ...++...+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------------------------~~~-~~~~~~~~l 189 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------------------------ASL-MPPEVSSRL 189 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-------------------------------chh-CCHHHHHHH
Confidence 579999999999999999999999999999876321 000 113556677
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
++.+++.++++++++.+.++..+. +.+.+.+.++ .++.+|.||+|+|..|+.
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSG-----RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcCC-----cEEECCEEEECcCCCcch
Confidence 777888899999999999988654 4566777665 679999999999999764
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=92.00 Aligned_cols=138 Identities=15% Similarity=0.137 Sum_probs=79.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC--CcCCCCC--CCeeeecCCcc--cccCCCC--CC---CC--
Q 035902 5 PVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS--LWKKRAY--DRMKLHLAKQF--CELPHMP--FP---SR-- 69 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~--~~~~~~~--~~~~~~~~~~~--~~~~~~~--~~---~~-- 69 (381)
||+|||||+||+++|..|++. |++|+++|+.+..++ +|..... ........... ..++... .+ ..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887766 3422110 00000000000 0011000 00 00
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 70 -TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
.-....+..+.+++.+.+. ..+.++++|.+++ . +. |++.++ .+++++.||.|.|..+..+...+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~---~~i~~~~~V~~v~--~--~~--v~l~dg-----~~~~A~~VI~A~G~~s~~~~~~~~ 146 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFP---EGVILGRKAVGLD--A--DG--VDLAPG-----TRINARSVIDCRGFKPSAHLKGGF 146 (370)
T ss_pred CCceEEEHHHHHHHHHHhhc---ccEEecCEEEEEe--C--CE--EEECCC-----CEEEeeEEEECCCCCCCcccccee
Confidence 0113345666666654332 2366788888873 2 33 455555 689999999999988543333455
Q ss_pred CCCCccee
Q 035902 149 GSFEGEYM 156 (381)
Q Consensus 149 ~~~~~~~~ 156 (381)
..+.|...
T Consensus 147 Q~f~G~~~ 154 (370)
T TIGR01789 147 QVFLGREM 154 (370)
T ss_pred eEEEEEEE
Confidence 44444333
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=94.29 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+...+.+.|++++.+++|+++..++ ++.+.|.+.+...++...++++.||+|+|.+
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 34455555566777899999999999998764 2333466554333334579999999999998
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.9e-08 Score=91.60 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=79.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~~ 217 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------PG--EDAEVSKVV 217 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------CC--CCHHHHHHH
Confidence 689999999999999999999999999999886321 00 113566677
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++++++|.+++.++ +...+...++ +...+.+|.||+|+|..|+..
T Consensus 218 ~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~g---~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 218 AKALKKKGVKILTNTKVTAVEKND--DQVVYENKGG---ETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeCC---cEEEEEeCEEEEecCCcccCC
Confidence 777888899999999999998754 4444554433 225799999999999998766
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.3e-08 Score=90.66 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=85.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+..|..+++.|.+|||+|+.+.+- + ...+++.+.+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------------p--~~D~ei~~~~ 220 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------------P--GEDPEISKEL 220 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------C--cCCHHHHHHH
Confidence 679999999999999999999999999999987432 0 1135888888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
...+++.++.+++++++..+...+ +...+.++++.. ..+++|.|++|+|-.|+...+
T Consensus 221 ~~~l~~~gv~i~~~~~v~~~~~~~--~~v~v~~~~g~~---~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 221 TKQLEKGGVKILLNTKVTAVEKKD--DGVLVTLEDGEG---GTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred HHHHHhCCeEEEccceEEEEEecC--CeEEEEEecCCC---CEEEeeEEEEccCCccCCCCC
Confidence 888888788999999999998765 335577777622 278999999999999998765
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-09 Score=70.41 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=40.0
Q ss_pred EECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCC
Q 035902 8 IVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAK 56 (381)
Q Consensus 8 IIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~ 56 (381)
|||||++|+++|+.|++.|.+|+|+|+++.+||.+.....+....+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~ 49 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGA 49 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeecc
Confidence 8999999999999999999999999999999997766545555444443
|
... |
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-08 Score=94.32 Aligned_cols=138 Identities=18% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCC--CcCCCC----CCCee-eecCCcc-------------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSAS--LWKKRA----YDRMK-LHLAKQF------------- 58 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~--~~~~~~----~~~~~-~~~~~~~------------- 58 (381)
|.++||+|||||.||++||+.+++.| .+|+|+|+....++ .+.... ..... .+....+
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d 80 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLAD 80 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCC
Confidence 77799999999999999999999874 79999999875443 111110 00000 0000000
Q ss_pred -----------------cccCCCCCCCC-------------------CCCCCCHHHHHHHHHHHHHHhCCccccccEEEE
Q 035902 59 -----------------CELPHMPFPSR-------------------TPTFVPRISFINYVDNYVSQMGINPRYHRSVES 102 (381)
Q Consensus 59 -----------------~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 102 (381)
..-...+++.. .+.-.+...+...+.+.+++.++++..++.+++
T Consensus 81 ~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~ 160 (575)
T PRK05945 81 QDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEE
Confidence 00000111100 001123456777777777778999999999999
Q ss_pred EEEeCCCCe-EEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 103 ASYDENAKA-WIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 103 i~~~~~~~~-~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+..++ +. .-+..-+...++...+.++.||+|||...
T Consensus 161 L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 161 LILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred EEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 87654 32 11222121122335689999999999984
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=90.80 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=81.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 219 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKLA 219 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHHH
Confidence 679999999999999999999999999999876321 10 124666777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.+++++++++|.++..++ +.+.+.+.++ ++.+.+.+|.||+|+|..|+...
T Consensus 220 ~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~g--g~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 220 ERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLEDG--GKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred HHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEeC--CeeEEEEeCEEEEeeCCccCCCC
Confidence 778888899999999999998764 4455555443 23357999999999999987654
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.1e-08 Score=90.47 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=77.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..+++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~~ 204 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAALA 204 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHHH
Confidence 679999999999999999999999999999976321 10 123566677
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.++++++++.+.+++.++ +...+.. ++ .++.+|.||+|+|..|+...
T Consensus 205 ~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~-~g-----~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 205 KQYMEEDGITFLLNAHTTEVKNDG--DQVLVVT-ED-----ETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred HHHHHHcCCEEEcCCEEEEEEecC--CEEEEEE-CC-----eEEEcCEEEEeeCCCCCccc
Confidence 777888899999999999998643 4433432 33 57999999999999988653
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=88.38 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHHHHHHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.+.+.+.+.+. ..+++++++++|+++.... ++.|++...+...++...+++|+||+|+|.+
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGaw 246 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGG 246 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcc
Confidence 44555555554 3478999999999998762 2568876532211122368999999999998
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=97.70 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+.+ +++++++++|+++...+ +.|.|.+.++ ..+++|.||+|+|.+
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~g-----~~~~ad~VV~A~G~~ 462 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAGG-----TLASAPVVVLANGHD 462 (662)
T ss_pred CHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECCC-----cEEECCEEEECCCCC
Confidence 344566666666666 88999999999998765 5677776654 567899999999998
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.2e-08 Score=90.29 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=77.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.+ .....++.+++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------~~~~~~~~~~l 192 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG--------------------------------RNAPPPVQRYL 192 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh--------------------------------hhcCHHHHHHH
Confidence 5799999999999999999999999999998763311 00123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.++++++++.+.++.. + +...+.+.++ +.+.+|.||+|+|..|+.
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~g-----~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQSG-----ETLQADVVIYGIGISAND 243 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECCC-----CEEECCEEEECCCCChhh
Confidence 7777888999999999998865 2 3445666665 579999999999999764
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=89.99 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
|+.+||+|||+|.||++||+.+++.|.+|+|+|+....+
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 778999999999999999999999999999999876544
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-07 Score=91.32 Aligned_cols=138 Identities=14% Similarity=0.035 Sum_probs=82.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCe----eeecCCc-------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRM----KLHLAKQ------------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~----~~~~~~~------------------- 57 (381)
++||+|||+|.||++||..+++.|.+|+|+|+....+|. +....+... ..+.+..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 479999999999999999999999999999998654431 111000000 0000000
Q ss_pred -----------ccccCCCCCCCC---------CCCC-----------------CCHHHHHHHHHHHHHHhCCccccccEE
Q 035902 58 -----------FCELPHMPFPSR---------TPTF-----------------VPRISFINYVDNYVSQMGINPRYHRSV 100 (381)
Q Consensus 58 -----------~~~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (381)
+..-...++... +... .....+...+.+.+.+.+++++.++.+
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~ 166 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence 000001111100 0000 134567777777777788999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 101 ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 101 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+++-.+++....-+...+...++...+.++.||+|||...
T Consensus 167 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 167 LDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred EEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 9987653222222333232233456789999999999884
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=87.85 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe-CEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA-RYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~-d~vIlAtG~~~ 140 (381)
...+.+.+.+.+++.++++++++.++++..+++.....|...+. ++...+++ +.||+|||...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~--~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRY--GETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeC--CcEEEEEeCCEEEECCCCcC
Confidence 45677778888888899999999999998764323333444432 23457889 99999999874
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=91.70 Aligned_cols=65 Identities=14% Similarity=-0.021 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeC-CCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDE-NAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+...+.+.|+.++.+++|+++..++ ++..+.|.+.+...++...+++|.||+|+|.+
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 344556666677788899999999999988753 23344455544333333478999999999998
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.4e-08 Score=90.81 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=76.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCCe--eeecCC------------------------
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-KKRAYDRM--KLHLAK------------------------ 56 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~--~~~~~~------------------------ 56 (381)
+||+|||||.||++||..+++.|.+|+|+|+....+..+ ....+... ..+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 799999999999999999999999999999975332211 11000000 000000
Q ss_pred ------cccccCCCCCCC-------CCCC-----CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEe
Q 035902 57 ------QFCELPHMPFPS-------RTPT-----FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAK 117 (381)
Q Consensus 57 ------~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~ 117 (381)
.++.-...++.. .++. -.....+.+.+.+.+++.++++... .+..+..++ +.+. +..
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~- 157 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFL- 157 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE-
Confidence 000000111110 0111 1134567888888888888887654 677776543 3332 333
Q ss_pred ecCCCceEEEEeCEEEEccCCCCC
Q 035902 118 NTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 118 ~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++ ..+.++.||+|||....
T Consensus 158 ~g-----~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 DG-----ELLKFDATVIATGGFSG 176 (466)
T ss_pred CC-----EEEEeCeEEECCCcCcC
Confidence 33 56899999999999854
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=87.80 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.....+.+.|..+...++|+++..++ +.|.|...+...++...++++.||.|||.+
T Consensus 169 ~~a~~A~~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW 224 (532)
T COG0578 169 ANARDAAEHGAEILTYTRVESLRREG--GVWGVEVEDRETGETYEIRARAVVNAAGPW 224 (532)
T ss_pred HHHHHHHhcccchhhcceeeeeeecC--CEEEEEEEecCCCcEEEEEcCEEEECCCcc
Confidence 33444566688888899999999887 478899998877888899999999999998
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=90.44 Aligned_cols=138 Identities=16% Similarity=0.113 Sum_probs=82.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCee--eecC-----------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRMK--LHLA----------------------- 55 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~~--~~~~----------------------- 55 (381)
++||+|||+|.||++||..+++.|.+|+|+|+....+|. +....+.... .+.+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 589999999999999999999999999999998765431 1110000000 0000
Q ss_pred -------CcccccCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 56 -------KQFCELPHMPFPSR--------------TP------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 56 -------~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
..+..-...++... .. .-.+...+.+.|.+.+++.+++++.++.+.++..+++
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~ 175 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGT 175 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC
Confidence 00000001111100 00 0113567888888888888899999999999976542
Q ss_pred CCeEEEEEee---cCCCceEEEEeCEEEEccCCCC
Q 035902 109 AKAWIIVAKN---TALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 109 ~~~~~v~~~~---~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
.....+...+ +...+...+.++.||+|||...
T Consensus 176 g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 176 GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 2222233331 1112235789999999999874
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-07 Score=88.50 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=77.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC----CCcCCC---------------------CCCCeeeecCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA----SLWKKR---------------------AYDRMKLHLAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g----~~~~~~---------------------~~~~~~~~~~~~ 57 (381)
.+||+|||||++|+++|..|++.|.+|+|+|+....+ +.+... ....+.......
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 4899999999999999999999999999999874221 111110 011111100000
Q ss_pred c--cccCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCE
Q 035902 58 F--CELPHMP--FPSRT-PTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARY 131 (381)
Q Consensus 58 ~--~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 131 (381)
. ..++... ++... .....+..+.+.+.+.+.+. ++++..+ ++.++..++ +..-.|+..+. .++..++.+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~~-dG~~~~~~AdL 199 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKNS-AGEETTALAPL 199 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEcC-CCCEEEEECCE
Confidence 0 0111000 00000 01234567888887777654 5776544 566665443 12112444321 22345678999
Q ss_pred EEEccCCCCCCCC
Q 035902 132 LVVATGENGLIPE 144 (381)
Q Consensus 132 vIlAtG~~~~~~~ 144 (381)
||.|+|.......
T Consensus 200 VVgADG~~S~vR~ 212 (514)
T PLN02985 200 TVVCDGCYSNLRR 212 (514)
T ss_pred EEECCCCchHHHH
Confidence 9999999965543
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=90.36 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=80.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+. + ....++...+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~l 222 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------------S--FLDDEISDAL 222 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------C--cCCHHHHHHH
Confidence 689999999999999999999999999999876331 0 0124566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++.++.+.++...+ +.+.+.+.++ ..+.+|.||+|+|..|+...
T Consensus 223 ~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 223 SYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKSG-----KKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred HHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECCC-----CEEEeCEEEEeecCCccccC
Confidence 777888899999999999998654 4455665554 47999999999999987653
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=90.82 Aligned_cols=137 Identities=18% Similarity=0.103 Sum_probs=82.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCe----eeecCCc-------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRM----KLHLAKQ------------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~----~~~~~~~------------------- 57 (381)
++||+|||||.||++||+++++.|.+|+|+||....++. +....+... ..+.+..
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 479999999999999999999999999999998755441 111111000 0000000
Q ss_pred -----------ccccCCCCCCCC---------CCC------------------CCCHHHHHHHHHHHHHHhCCccccccE
Q 035902 58 -----------FCELPHMPFPSR---------TPT------------------FVPRISFINYVDNYVSQMGINPRYHRS 99 (381)
Q Consensus 58 -----------~~~~~~~~~~~~---------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
++.-...++... +.. -.+...+...+.+.+.+.+++++.++.
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 188 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYF 188 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceE
Confidence 000000111000 000 013457777888878788999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 100 VESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 100 v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
++++..+++....-+...+...++...+.++.||+|||..
T Consensus 189 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 189 ALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred EEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 9997763222222233323223345678999999999987
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=88.50 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=79.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..+++.|.+|+|+|+.+.+. +. ...++.+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~l 221 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKTL 221 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHHH
Confidence 689999999999999999999999999999876321 11 113566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++.+.++...+ +...+...+...++.+.+.+|.||+|+|..|+..
T Consensus 222 ~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 222 QKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred HHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 778888899999999999997653 3344444322112336799999999999998764
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=89.56 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=80.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 214 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------RG--FDPDIRETL 214 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 00 123666777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++++++|.++..++ ++.+.+.+.++ ..+.+|.||+|+|..|+...
T Consensus 215 ~~~L~~~GV~i~~~~~V~~i~~~~-~g~~~v~~~~g-----~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 215 VEEMEKKGIRLHTNAVPKAVEKNA-DGSLTLTLEDG-----ETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred HHHHHHCCcEEECCCEEEEEEEcC-CceEEEEEcCC-----cEEEeCEEEEeeCCCcCCCC
Confidence 778888899999999999998754 23355666555 57999999999999987653
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=92.30 Aligned_cols=139 Identities=10% Similarity=0.124 Sum_probs=81.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC-CcC--CCCCCC-ee--eecCCcc----------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS-LWK--KRAYDR-MK--LHLAKQF---------------- 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~-~~~--~~~~~~-~~--~~~~~~~---------------- 58 (381)
++||+|||||.||++||+.+++. |.+|+|+|+....++ ... ...... +. .+.+..+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 38999999999999999999987 689999999875322 210 000000 00 0000000
Q ss_pred --------------cccCCCCCCCC------------CC----CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 59 --------------CELPHMPFPSR------------TP----TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 59 --------------~~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
+.....++... .. .......+.+.+.+.+++.++++..++.+.++..+++
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~ 168 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDAD 168 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC
Confidence 00000111000 00 0113456778888888888999999999999976522
Q ss_pred CCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 109 AKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 109 ~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.....+...+...++...+.++.||+|||....
T Consensus 169 g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 169 GRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 222223332222233457899999999999853
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-07 Score=90.43 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC-CcCCC--CCC-Ceee-ecCCcc-----------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS-LWKKR--AYD-RMKL-HLAKQF----------------- 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~-~~~~~--~~~-~~~~-~~~~~~----------------- 58 (381)
++||+|||||.||++||+.+++. |.+|+|||+....++ .+... ... .+.. +.+..+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 48999999999999999999998 999999999864332 11111 000 0000 000000
Q ss_pred -------------cccCCCCCCCCC----------CCCCCHHHHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEE
Q 035902 59 -------------CELPHMPFPSRT----------PTFVPRISFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWII 114 (381)
Q Consensus 59 -------------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v 114 (381)
+.....++.... ........+.+.+.+.+++.+ ++++.++.+.++..++ +....+
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v~Gv 169 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRIAGA 169 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEEEEE
Confidence 000011110000 001234456666666666654 9999999999987654 222223
Q ss_pred EEeecCCCceEEEEeCEEEEccCCC
Q 035902 115 VAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 115 ~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...++...+.++.||+|||..
T Consensus 170 ~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 170 VGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred EEEEccCCcEEEEECCEEEECCCch
Confidence 2222112234578999999999987
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=87.96 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=79.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +.+ ..++...+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~~--d~~~~~~l 219 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PNE--DAEVSKEI 219 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Ccc--CHHHHHHH
Confidence 579999999999999999999999999999875321 111 23566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++.|.++..++ +...+.+.+ ..++...+.+|.||+|+|..|+..
T Consensus 220 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 220 AKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSK-KDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred HHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEe-cCCCeEEEEeCEEEECcCcccCCC
Confidence 778888899999999999997654 444455441 112235799999999999998765
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-07 Score=88.47 Aligned_cols=136 Identities=16% Similarity=0.097 Sum_probs=81.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCC-e-----eeecCC------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDR-M-----KLHLAK------------------ 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~-~-----~~~~~~------------------ 56 (381)
++||+|||+|.||++||..+++.|.+|+|+||....++. +....+.. + ..+...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 489999999999999999999999999999998644331 11100000 0 000000
Q ss_pred ------------cccccCCCCCCCC--------------CCC-----CCCHHHHHHHHHHHHHHhCCccccccEEEEEEE
Q 035902 57 ------------QFCELPHMPFPSR--------------TPT-----FVPRISFINYVDNYVSQMGINPRYHRSVESASY 105 (381)
Q Consensus 57 ------------~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 105 (381)
.++.....++... .+. -.+...+.+.+.+.+.+.++++..++.++++..
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~ 164 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVT 164 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEE
Confidence 0000011111100 000 013456677777767667899999999999887
Q ss_pred eCCCCeE-EEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 106 DENAKAW-IIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 106 ~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++ +.. -+...+...++...+.++.||+|||...
T Consensus 165 ~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 165 DN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 54 432 2444443333446789999999999874
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=88.46 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=80.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 213 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAAV 213 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 10 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
++.+++.+++++++++|..+..++ +...+.+... ++.+++.+|.||+|+|..|+...+
T Consensus 214 ~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~~--~~~~~i~~D~ViiA~G~~p~~~~l 271 (463)
T TIGR02053 214 EEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEKP--GGQGEVEADELLVATGRRPNTDGL 271 (463)
T ss_pred HHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEeC--CCceEEEeCEEEEeECCCcCCCCC
Confidence 777888899999999999997654 3444554431 112679999999999999876643
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-07 Score=90.31 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
++||+|||||.||++||..+++.|.+|+|+|+...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 479999999999999999999999999999986544
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-07 Score=88.08 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++++++|+++..++ ++.|.+.+.+...++...+++|+||+|+|.+
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 34566666666777799999999999998754 2457776544322333468999999999988
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=89.45 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHH----hC--CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQ----MG--INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~----~~--~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++ .| +.++++++|+++...+ ++.|.|.+.++ .+++|+||+|+|.+
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G------~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG------EIRARFVVVSACGY 272 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC------EEEeCEEEECcChh
Confidence 344566666666766 66 6788999999998763 35677877654 59999999999988
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-07 Score=87.87 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=77.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..+.+.|.+|+++++.+.+. +. ...++.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~l 217 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHIL 217 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHHH
Confidence 679999999999999999999999999999876321 10 124667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.+..++.++ ....+.. ++ +...+.+|.||+|+|..|+...
T Consensus 218 ~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~-~g---~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 218 REKLENDGVKIFTGAALKGLNSYK--KQALFEY-EG---SIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred HHHHHHCCCEEEECCEEEEEEEcC--CEEEEEE-CC---ceEEEEeCEEEEecCCccCCCC
Confidence 778888899999999999987654 3333322 22 2247999999999999987653
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=88.46 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=79.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..+++.|.+|+++++.+.+. +. ...++...+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 213 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRALL 213 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHHH
Confidence 579999999999999999999999999999876321 11 123566677
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++.++.+.++..++ +...+.+.++ ..+.+|.||+|+|..|+..
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSHG-----EEIVADVVLFATGRSPNTK 266 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcCC-----cEeecCEEEEeeCCCcCCC
Confidence 777888899999999999997654 3455665554 5799999999999998764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=89.91 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++.++.|++++. . +.+.|.+.++ .+++|.||+|+|.+
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~g------~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPDG------QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCCc------EEECCEEEEccccc
Confidence 345556666777788999999999999874 2 3456766553 58999999999987
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-07 Score=88.11 Aligned_cols=138 Identities=17% Similarity=0.071 Sum_probs=81.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCC----CeeeecCCcc------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYD----RMKLHLAKQF------------------ 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~----~~~~~~~~~~------------------ 58 (381)
++||+|||+|.||++||+.+++.|.+|+|||+....++. +...... ....+....+
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~ 91 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE 91 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence 379999999999999999999999999999997543331 1110000 0000000000
Q ss_pred ------------cccCCCCCCC---------CCCC-----------------CCCHHHHHHHHHHHHHHhCCccccccEE
Q 035902 59 ------------CELPHMPFPS---------RTPT-----------------FVPRISFINYVDNYVSQMGINPRYHRSV 100 (381)
Q Consensus 59 ------------~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (381)
..-...++.. .+.. -.+...+.+.|.+.+.+.+++++.++.+
T Consensus 92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~~~ 171 (591)
T PRK07057 92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMA 171 (591)
T ss_pred HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCcEE
Confidence 0000001100 0000 0134567777777777789999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 101 ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 101 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+++..++++....+...+...++...+.++.||+|||...
T Consensus 172 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 172 LDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred EEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 8887653222233444332223445789999999999873
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-07 Score=86.68 Aligned_cols=57 Identities=9% Similarity=-0.069 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..+...+.+.+.+.|++++.+++|.++...++...+.|.+.++ .+.+++||+|+|.+
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g------~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG------FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc------eEECCEEEECCChh
Confidence 3445555667777899999999999997643233344666553 58999999999987
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-07 Score=87.04 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=80.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~~ 230 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAKEA 230 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999876321 10 124666777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++.++.|..++.++ +...+...++ .++...+.+|.|++|+|..|+...
T Consensus 231 ~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~~-~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 231 AKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTDA-DGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred HHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEeC-CCceeEEEcCEEEEccCCccCCCC
Confidence 777777899999999999998654 3444554442 123357999999999999988663
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-07 Score=88.39 Aligned_cols=138 Identities=17% Similarity=0.096 Sum_probs=81.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCC----CeeeecCC--------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYD----RMKLHLAK-------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~----~~~~~~~~-------------------- 56 (381)
++||+|||||.||++||+++++.|.+|+|+||....++. +...... ....+...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 91 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE 91 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 379999999999999999999999999999998644331 1110000 00000000
Q ss_pred ----------cccccCCCCCCC---------CCCC------------------CCCHHHHHHHHHHHHHHhCCccccccE
Q 035902 57 ----------QFCELPHMPFPS---------RTPT------------------FVPRISFINYVDNYVSQMGINPRYHRS 99 (381)
Q Consensus 57 ----------~~~~~~~~~~~~---------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
.+..-...++.. .+.. -.....+...|.+.+.+.++++..++.
T Consensus 92 ~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~~ 171 (598)
T PRK09078 92 YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYF 171 (598)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeEE
Confidence 000000011100 0000 013456777777777778999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 100 VESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 100 v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++++..+++....-+...+...++...+.++.||+|||...
T Consensus 172 v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 172 ALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred EEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 99987653222222333232233456889999999999873
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-06 Score=76.05 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+||+|||||++|+++|+.+.+.|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999875
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=85.49 Aligned_cols=60 Identities=15% Similarity=0.314 Sum_probs=47.7
Q ss_pred HHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 79 FINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+.+.+-+.+.+ .++.++++++|.++.+.. ++.|.|.+.+...++...+++++|+|..|..
T Consensus 183 LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 183 LTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGRWEVKVKDLKTGEKREVRAKFVFVGAGGG 243 (488)
T ss_pred HHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCCEEEEEEecCCCCeEEEECCEEEECCchH
Confidence 34444444444 488999999999999875 5779999987766677899999999999987
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-08 Score=93.36 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 74 VPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
..+..+.++|.+.+.+.|++++.+ .|.++..++++....|++.++ +++++|++|.|||......
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g-----~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDG-----RTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTS-----EEEEESEEEE-SGGG-CCC
T ss_pred EeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCC-----CEEEEeEEEECCCccchhh
Confidence 457789999999999999998665 588887776322234666665 7899999999999885443
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-07 Score=87.99 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCe--eeecCCc-------------------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRM--KLHLAKQ------------------- 57 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~--~~~~~~~------------------- 57 (381)
|.++||+|||+|.||++||..+++ |.+|+|+|+....++. |....+... ..+.+..
T Consensus 1 ~~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 79 (510)
T PRK08071 1 MPSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVR 79 (510)
T ss_pred CCccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHH
Confidence 567899999999999999999976 8999999998755441 111100000 0000000
Q ss_pred -----------ccccCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEe
Q 035902 58 -----------FCELPHMPFPSR--------------TP------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYD 106 (381)
Q Consensus 58 -----------~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 106 (381)
+..-...++... .+ .......+.+.+.+.++ .+++++.++.++++..+
T Consensus 80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~ 158 (510)
T PRK08071 80 YLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeec
Confidence 000001111100 00 01124456666666555 48899999999988654
Q ss_pred CCCCeE-EEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 107 ENAKAW-IIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 107 ~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+ +.+ .+...+. .++...+.++.||+|||....
T Consensus 159 ~--g~v~Gv~~~~~-~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 N--GRCIGVLTKDS-EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred C--CEEEEEEEEEC-CCcEEEEEcCeEEEecCCCcc
Confidence 3 332 2444332 234457899999999999743
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-07 Score=87.73 Aligned_cols=138 Identities=16% Similarity=0.087 Sum_probs=82.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCC----eeeecCCc-------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDR----MKLHLAKQ------------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~----~~~~~~~~------------------- 57 (381)
++||+|||+|.||++||+++++.|.+|+|+||....++. +....+.. ...+....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 379999999999999999999999999999998754431 11110000 00000000
Q ss_pred -----------ccccCCCCCCCC---------CC------------------CCCCHHHHHHHHHHHHHHhCCccccccE
Q 035902 58 -----------FCELPHMPFPSR---------TP------------------TFVPRISFINYVDNYVSQMGINPRYHRS 99 (381)
Q Consensus 58 -----------~~~~~~~~~~~~---------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
++.-...++... +. .-.+...+.+.+.+.+.+.+++++.++.
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 209 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF 209 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence 000001111100 00 0013456777777777777999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 100 VESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 100 v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++++..+++....-+...+...++...+.++.||+|||...
T Consensus 210 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 210 ALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred EEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 99876653222222333332233456789999999999873
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-07 Score=88.50 Aligned_cols=134 Identities=18% Similarity=0.124 Sum_probs=78.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCC----CCeee-ecCC---------------------
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAY----DRMKL-HLAK--------------------- 56 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~----~~~~~-~~~~--------------------- 56 (381)
||+|||||.||++||+.+++.|.+|+|+|+....++. +..... ..... +...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 7999999999999999999999999999998654331 110000 00000 0000
Q ss_pred ---------cccccCCCCCCC---------C----------CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 57 ---------QFCELPHMPFPS---------R----------TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 57 ---------~~~~~~~~~~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
.++.-...++.. . +..-.....+...+.+.+.+.+++++.++.++++..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~- 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD- 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-
Confidence 000000011100 0 00011234566777777777799999999999997654
Q ss_pred CCeE-EEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 109 AKAW-IIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 109 ~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+.. .+...+...++...+.++.||+|||...
T Consensus 160 -g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 160 -GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred -CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 432 2333222222345789999999999874
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-07 Score=87.36 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=78.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 218 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------------PR--EDEDVAAAV 218 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876331 10 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++.|.+++..+ +...+.+... ++...+.+|.||+|+|..|+..
T Consensus 219 ~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~--~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 219 REILEREGIDVRLNAECIRVERDG--DGIAVGLDCN--GGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeC--CCceEEEeCEEEECcCCCcCCC
Confidence 777888899999999999998654 3334444321 1125799999999999998765
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=88.04 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=80.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..+++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 250 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAVV 250 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHHH
Confidence 679999999999999999999999999999875221 10 124667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.|.++...+ +...+.+.++ .++.+|.|++|+|..|+...
T Consensus 251 ~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~g-----~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 251 ARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDHG-----EEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECCC-----cEEEcCEEEEeecCCCCCCC
Confidence 778888899999999999997654 3444555444 57999999999999987654
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=85.74 Aligned_cols=95 Identities=24% Similarity=0.379 Sum_probs=76.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-------------CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-------------SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRT 70 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-------------g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (381)
.+++|+|||+.|+.+|-+|++. ..+|+|||+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 3699999999999999998764 13889999887432
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 71 PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+.+ ..++.++.+..+++.|+++++++.|++++.+. |++++++ +++.++.+|-|+|.++.
T Consensus 205 p~~--~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~----~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 205 PMF--PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGE----EEIPADTVVWAAGVRAS 263 (405)
T ss_pred cCC--CHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCC----eeEecCEEEEcCCCcCC
Confidence 111 24788899999999999999999999998654 8887762 26999999999999943
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-07 Score=86.94 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=80.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PG--EDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CC--CCHHHHHHH
Confidence 579999999999999999999999999999876321 11 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++.++++.+++.++ +.+.+.+.++ +++.+|.|++|+|..|+...
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~g-----~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTG--DGVVVTLTDG-----RTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECCC-----cEEEecEEEEeecCCcCCCC
Confidence 888888899999999999997654 4445665554 57999999999999988653
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-07 Score=87.34 Aligned_cols=61 Identities=11% Similarity=0.335 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 78 SFINYVDNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.+.+.+.+.+++.+ ++++++++|+++...+ ++.|.+.+.+...++...+++++||+|+|.+
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG 245 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCCEEEEEEEcCCCceEEEEcCEEEECCCcc
Confidence 45556666666665 7999999999998754 2457777654222222369999999999998
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-07 Score=87.00 Aligned_cols=136 Identities=14% Similarity=0.052 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC-CCCC--cCCCCCCCe--eeecCC---------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC-SASL--WKKRAYDRM--KLHLAK--------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~-~g~~--~~~~~~~~~--~~~~~~--------------------- 56 (381)
++||+|||+|.||++||..+ +.|.+|+|+|+... .+|. +....+... ..+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~ 85 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence 38999999999999999999 88999999999764 3331 111100000 000000
Q ss_pred ---------cccccCCCCCCCC--------------CCC-----CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC
Q 035902 57 ---------QFCELPHMPFPSR--------------TPT-----FVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN 108 (381)
Q Consensus 57 ---------~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 108 (381)
.++.....++... ++. -.+...+...+.+.+.+.++++++++.++++..++
T Consensus 86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~- 164 (543)
T PRK06263 86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDE- 164 (543)
T ss_pred HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-
Confidence 0000001111100 000 01345677777777777899999999999987654
Q ss_pred CC-eEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 109 AK-AWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 109 ~~-~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
.+ ...+...+...++...+.++.||+|||...
T Consensus 165 ~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 165 NREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 23 222333221223345789999999999874
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-07 Score=87.61 Aligned_cols=128 Identities=15% Similarity=0.252 Sum_probs=75.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC-C-C-CCcCCC---------CCCCe-----------------ee-
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC-S-A-SLWKKR---------AYDRM-----------------KL- 52 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~-~-g-~~~~~~---------~~~~~-----------------~~- 52 (381)
..+|+|||||++|+++|..|+++|++|+|||+... . + +.+... ....+ ..
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i~ 160 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRIN 160 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccceee
Confidence 37899999999999999999999999999999741 1 1 111100 00000 00
Q ss_pred ---ec-CCcc-cccCCCCCC--CCCC--CCCCHHHHHHHHHHHHHHhCCc-cccccEEEEEEEeCCCCeEEEEEeecCCC
Q 035902 53 ---HL-AKQF-CELPHMPFP--SRTP--TFVPRISFINYVDNYVSQMGIN-PRYHRSVESASYDENAKAWIIVAKNTALD 122 (381)
Q Consensus 53 ---~~-~~~~-~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~v~~~~~~~~ 122 (381)
+. ...+ ..+...... ...+ ....+.++.+.|.+. .+.. ++++++|+++..++ +.+++.+.++
T Consensus 161 ~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~~--d~VtV~~~dG--- 232 (668)
T PLN02927 161 GLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGEDVIRNESNVVDFEDSG--DKVTVVLENG--- 232 (668)
T ss_pred eeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEeC--CEEEEEECCC---
Confidence 00 0000 000000000 0011 123466666665432 3333 56788999998765 5566777765
Q ss_pred ceEEEEeCEEEEccCCCC
Q 035902 123 AYEEYVARYLVVATGENG 140 (381)
Q Consensus 123 ~~~~~~~d~vIlAtG~~~ 140 (381)
..+.+|.||.|.|.+.
T Consensus 233 --~ti~aDlVVGADG~~S 248 (668)
T PLN02927 233 --QRYEGDLLVGADGIWS 248 (668)
T ss_pred --CEEEcCEEEECCCCCc
Confidence 5789999999999884
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=85.81 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=80.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCee--eecCC----------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRMK--LHLAK---------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~~--~~~~~---------------------- 56 (381)
++||+|||+|.||++||+.+++.|. |+|+|+....+|. |....+.... .+.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 9999998654431 2111000000 00000
Q ss_pred --------cccccCCCCCCC--------------CCCC-----CCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCC
Q 035902 57 --------QFCELPHMPFPS--------------RTPT-----FVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDEN 108 (381)
Q Consensus 57 --------~~~~~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~ 108 (381)
.++.-...++.. ..+. ..+...+.+.+.+.+++ .+++++.++.++++..++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~- 159 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET- 159 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-
Confidence 000000011110 0000 11345777778777776 689999999999987653
Q ss_pred CCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 109 AKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 109 ~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.....+...+. ++...+.++.||+|||....
T Consensus 160 g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 160 GRVVGVWVWNR--ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CEEEEEEEEEC--CcEEEEEcCEEEECCCcccC
Confidence 22222444432 22357899999999999843
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-07 Score=84.08 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+||+|||||++|+++|++|++.|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999975
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-07 Score=87.18 Aligned_cols=136 Identities=11% Similarity=0.076 Sum_probs=78.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC--CcCCCCCCCee--eecCC----------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS--LWKKRAYDRMK--LHLAK---------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~--~~~~~~~~~~~--~~~~~---------------------- 56 (381)
++||+|||+|.||++||+.+++.| +|+|+|+....+| .|....+.... .+.+.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~ 107 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVV 107 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHHH
Confidence 489999999999999999999999 9999999876554 11111000000 00000
Q ss_pred --------cccccCCCCCCC---------CC-----C-----CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCC
Q 035902 57 --------QFCELPHMPFPS---------RT-----P-----TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDEN 108 (381)
Q Consensus 57 --------~~~~~~~~~~~~---------~~-----~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~ 108 (381)
.+..-...++.. .. + .-.....+...+.+.+.+ .+++++.++.++++-.+++
T Consensus 108 ~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~ 187 (594)
T PLN02815 108 CTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQD 187 (594)
T ss_pred HHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecC
Confidence 000000011100 00 0 011345666666666654 4889999999988876532
Q ss_pred CC---eEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 109 AK---AWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 109 ~~---~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
++ ..-+...+...+....+.++.||||||..
T Consensus 188 g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 188 GGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred CCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 22 22243333223345678999999999987
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.8e-07 Score=86.42 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=77.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++...+ + ....++.+.+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------~--~~d~~~~~~l 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------F--REDPLLGETL 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------C--cchHHHHHHH
Confidence 67999999999999999999999999999875311 0 0123567777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.+.++..++ +.+.+...+ .++.+|.||+|+|..|+...
T Consensus 235 ~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~------g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 235 TACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGH------GELRAEKLLISTGRHANTHD 287 (479)
T ss_pred HHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcC------CeEEeCEEEEccCCCCCccC
Confidence 888888899999999999997654 444455433 35889999999999987653
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.8e-07 Score=86.26 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=77.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|++.|.+|+++++...+ +. ...++.+.+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------~~--~~~~~~~~l 224 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------------------------------SQ--EDPAVGEAI 224 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------CC--CCHHHHHHH
Confidence 67999999999999999999999999999864311 10 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.++++++++.+.+++.++ +.+.+.+.+ ..+.+|.||+|+|..|+...
T Consensus 225 ~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~~------~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 225 EAAFRREGIEVLKQTQASEVDYNG--REFILETNA------GTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEECC------CEEEeCEEEEccCCCCCcCC
Confidence 888888899999999999987654 444444433 35999999999999987653
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.9e-08 Score=88.43 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=77.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCC------------ee----eecCCcccccCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDR------------MK----LHLAKQFCELPHM 64 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~------------~~----~~~~~~~~~~~~~ 64 (381)
+.+||+|||||.||+.||.+.++.|.++.|+--+. .+|-...+....+ +. .........+.-+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 45999999999999999999999999999987653 2221111110000 00 0000001111111
Q ss_pred CCCCCCCC-----CCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 65 PFPSRTPT-----FVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 65 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
+....... ...+..+...++..++.. ++. .+...|.++..++......|.+.+| ..+.|+.||++||+
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~-l~q~~v~dli~e~~~~v~GV~t~~G-----~~~~a~aVVlTTGT 156 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH-LLQGEVEDLIVEEGQRVVGVVTADG-----PEFHAKAVVLTTGT 156 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce-ehHhhhHHHhhcCCCeEEEEEeCCC-----CeeecCEEEEeecc
Confidence 11111111 223344556666666543 444 4556677776655333455888887 78999999999999
Q ss_pred C
Q 035902 139 N 139 (381)
Q Consensus 139 ~ 139 (381)
+
T Consensus 157 F 157 (621)
T COG0445 157 F 157 (621)
T ss_pred c
Confidence 8
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-07 Score=85.22 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=79.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. -..++.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~d~~~~~~~ 213 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RS--FDSMISETI 213 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 11 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.+++++.++.+..+..+. .+...+.+.++ ...+.+|.||+|+|..|+...
T Consensus 214 ~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~g----~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 214 TEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFEDG----KSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred HHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECCC----cEEEEcCEEEEeeCCCcCccc
Confidence 777888899999999999997653 23344555443 246999999999999988653
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-07 Score=86.22 Aligned_cols=100 Identities=20% Similarity=0.131 Sum_probs=75.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~l 213 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISERF 213 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 00 113455555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+..+ .++++++++++.+++.++ +...+.+.++ ..+.+|.|++|+|..|+...
T Consensus 214 ~~l~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 214 TELAS-KRWDVRLGRNVVGVSQDG--SGVTLRLDDG-----STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred HHHHh-cCeEEEeCCEEEEEEEcC--CEEEEEECCC-----cEeecCEEEEEECCccCccc
Confidence 55443 478899999999997654 3444555544 57999999999999988754
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.7e-07 Score=85.15 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.||++||..+. .|.+|+|+||....++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 589999999999999999985 7999999999876554
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.5e-07 Score=86.81 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=33.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
++||+|||||.||++||..+++.|.+|+|+|+....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 4899999999999999999999999999999987543
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-07 Score=86.19 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+.+|..|++.|.+|+++++.+.+.. +. ...++.+.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~--~~~~~~~~~ 185 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL--FDEEMNQIV 185 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc--cCHHHHHHH
Confidence 6799999999999999999999999999998763210 00 113566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.+++.++ . . +.+.++ ..+.+|.||+|+|..|...
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~~~--~-~-v~~~~g-----~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEGEE--R-V-KVFTSG-----GVYQADMVILATGIKPNSE 236 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEecCC--C-E-EEEcCC-----CEEEeCEEEECCCccCCHH
Confidence 788888899999999999987543 2 2 344454 5799999999999997754
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.3e-07 Score=78.83 Aligned_cols=153 Identities=17% Similarity=0.187 Sum_probs=108.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++.+|||||+.|+..+.-..+.|-+||++|-.+.+++. -..++.+.+
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk~~ 258 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISKAF 258 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHHHH
Confidence 67999999999999999999999999999988876642 124888899
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCccee-ecCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYM-HSSKYE 162 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~-~~~~~~ 162 (381)
+..+.+.++.+.++++|+.+..+.+ +...+.+.+...++.+.+++|.+++|+|-+|..-.+ |++.. |... ...+..
T Consensus 259 qr~L~kQgikF~l~tkv~~a~~~~d-g~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GL-gle~i-Gi~~D~r~rv~ 335 (506)
T KOG1335|consen 259 QRVLQKQGIKFKLGTKVTSATRNGD-GPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGL-GLEKI-GIELDKRGRVI 335 (506)
T ss_pred HHHHHhcCceeEeccEEEEeeccCC-CceEEEEEecCCCceeEEEeeEEEEEccCcccccCC-Chhhc-cccccccccee
Confidence 9999999999999999999998874 356677777666677889999999999999887654 33321 1000 000111
Q ss_pred CCCC--CCCCeEEEEcCCCCHHHHHHHHhhCC
Q 035902 163 NGGK--FIGKNVLVVGCGNSGMEIAYDLSSCG 192 (381)
Q Consensus 163 ~~~~--~~~~~v~viG~G~~~~e~a~~l~~~g 192 (381)
.... ..-..+-.||-=..|--+|....+.|
T Consensus 336 v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 336 VNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred ccccccccCCceEEecccCCcchhhhhhhhhc
Confidence 1111 12345777775444444555555554
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.3e-07 Score=83.77 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=75.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|++|++.+.+. +. ...++...+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~l 216 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-------------------------------RH--LDEDISDRF 216 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 00 113445555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+..+ .+++++++++|.++..++ +...+.+.++ +++.+|.|++|+|..|+...
T Consensus 217 ~~~~~-~gI~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 217 TEIAK-KKWDIRLGRNVTAVEQDG--DGVTLTLDDG-----STVTADVLLVATGRVPNGDL 269 (452)
T ss_pred HHHHh-cCCEEEeCCEEEEEEEcC--CeEEEEEcCC-----CEEEcCEEEEeeccCcCCCC
Confidence 55443 478899999999998654 4455655554 57999999999999987653
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.7e-07 Score=86.23 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=34.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC---CCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS---VPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g---~~v~lie~~~~~g~ 40 (381)
++||+|||||.||++||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 489999999999999999999998 89999999875554
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-07 Score=86.51 Aligned_cols=100 Identities=24% Similarity=0.283 Sum_probs=76.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..+++.|.+|+++++.+.+. +. ....++.+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~-~~~~~~~~~l 197 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------PD-SFDKEITDVM 197 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------ch-hcCHHHHHHH
Confidence 679999999999999999999999999999875321 00 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++++.+++.++ ....+.+++ ..+.+|.||+|+|..|+.+
T Consensus 198 ~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~------~~i~~d~vi~a~G~~p~~~ 249 (444)
T PRK09564 198 EEELRENGVELHLNEFVKSLIGED--KVEGVVTDK------GEYEADVVIVATGVKPNTE 249 (444)
T ss_pred HHHHHHCCCEEEcCCEEEEEecCC--cEEEEEeCC------CEEEcCEEEECcCCCcCHH
Confidence 888888899999999999986432 333344333 3699999999999987654
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-07 Score=81.95 Aligned_cols=137 Identities=23% Similarity=0.314 Sum_probs=82.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhC------CCCeEEEecCCCCCCCcCCC------CCCCeee-----------ecCCc--
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL------SVPNIILEREDCSASLWKKR------AYDRMKL-----------HLAKQ-- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~------g~~v~lie~~~~~g~~~~~~------~~~~~~~-----------~~~~~-- 57 (381)
.+||+||||||||++||++|.+. .++|+++|+...+|+.-... .++.+.- ....+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 48999999999999999998764 56999999999888732111 1111100 00000
Q ss_pred --ccccCCCCCCCCCC------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec------CCCc
Q 035902 58 --FCELPHMPFPSRTP------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT------ALDA 123 (381)
Q Consensus 58 --~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~------~~~~ 123 (381)
+..-..++.|.-++ -..+..++.+++-+.++.+|+++.-+..+..+-.+++++.-.+-++|- ...+
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd 235 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKD 235 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccc
Confidence 00111122222111 124567899999999999999987776666666555433322333321 0000
Q ss_pred ----eEEEEeCEEEEccCCC
Q 035902 124 ----YEEYVARYLVVATGEN 139 (381)
Q Consensus 124 ----~~~~~~d~vIlAtG~~ 139 (381)
.-++.++.-|.|-|++
T Consensus 236 ~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 236 TFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred cccccceecceeEEEecccc
Confidence 1358899999999987
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-06 Score=84.94 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCC---CCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDEN---AKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+.+.|.+.+++.++++..++.+.++..+++ ....-+...+...++...+.++.||+|||...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 456777888888888999999999999876431 22222333222223345789999999999984
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-07 Score=86.98 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+.. ....++.+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~l 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQPI 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHHH
Confidence 5799999999999999999999999999998763210 0123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.+++. .. +.+.++ ..+.+|.|++|+|..|+..
T Consensus 196 ~~~l~~~gI~i~~~~~v~~i~~----~~--v~~~~g-----~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 196 LDELDKREIPYRLNEEIDAING----NE--VTFKSG-----KVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred HHHHHhcCCEEEECCeEEEEeC----CE--EEECCC-----CEEEeCEEEECcCCCcChH
Confidence 7778888999999999998852 22 666554 4689999999999998754
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4e-07 Score=91.87 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|++..+.+. +. .-..+..+.+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------~~-~ld~~~~~~l 193 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------AE-QLDQMGGEQL 193 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------------------------hh-hcCHHHHHHH
Confidence 579999999999999999999999999999876321 00 0123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++.+++.|+++++++.+.++..+.......+.+.++ ..+.+|.||+|+|..|+..
T Consensus 194 ~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG-----~~i~~D~Vv~A~G~rPn~~ 248 (847)
T PRK14989 194 RRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG-----SELEVDFIVFSTGIRPQDK 248 (847)
T ss_pred HHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC-----CEEEcCEEEECCCcccCch
Confidence 788888899999999999997543223344666666 6799999999999998753
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=80.78 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=40.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCee
Q 035902 5 PVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMK 51 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~ 51 (381)
+++|||||++|++||+.|++++ .+++|+|+++.+||........+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~ 50 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFL 50 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEE
Confidence 5999999999999999999998 8999999999999976654444333
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-06 Score=82.14 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=77.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~~ 216 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-------------------------------P--LEDPEVSKQA 216 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------c--chhHHHHHHH
Confidence 689999999999999999999999999999876321 0 0123667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++. +++++++++.++..++. ....+...++ +..++.+|.||+|+|..|+...
T Consensus 217 ~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~---~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 217 QKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGG---KTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred HHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCC---ceEEEEeCEEEEccCCccCCCC
Confidence 7777777 99999999999976542 2333332222 2357999999999999988764
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-07 Score=84.22 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=77.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|.+.|.+|+|+++.+.+. +.+ ..++.+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~l 205 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIADNI 205 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHHHH
Confidence 579999999999999999999999999999875321 111 23566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++++.++..++ +.+.+...+ .++.+|.|++|+|..|+..
T Consensus 206 ~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~------g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 206 ATILRDQGVDIILNAHVERISHHE--NQVQVHSEH------AQLAVDALLIASGRQPATA 257 (441)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcC------CeEEeCEEEEeecCCcCCC
Confidence 778888899999999999998654 444444333 2488999999999998764
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.8e-07 Score=84.08 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=78.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..+.+.|.+|+||++.+.+. +. ...++.+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHHH
Confidence 679999999999999999999999999999886431 11 123566667
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++. +.+++++.+..+...+ +...+.+.++. ++..++.+|.||+|+|..|+...
T Consensus 222 ~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~~~-~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 222 TKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEGKK-APAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred HHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEeCC-CcceEEEeCEEEEeecccccCCc
Confidence 7777666 8899999999987654 34445554321 12356999999999999988653
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.6e-07 Score=85.33 Aligned_cols=100 Identities=18% Similarity=0.068 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++...+ +. ...++.+.+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------------------------------~~--~d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL--------------------------------RG--FDRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc--------------------------------cc--CCHHHHHHH
Confidence 58999999999999999999999999999864311 10 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.+++++.++.+..+...+ +...+.+.++ +.+.+|.|++|+|..|+...
T Consensus 229 ~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~g-----~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 229 VEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSDG-----TTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred HHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECCC-----CEEEcCEEEEeeCCCCCccc
Confidence 778888899999999888887654 3344555554 46899999999999988653
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-07 Score=87.13 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=77.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|.+.|.+|+|+++...+ +. ...++.+.+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~~--~d~~~~~~l 316 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------FR--EDPAIGEAV 316 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------cc--cCHHHHHHH
Confidence 68999999999999999999999999999975311 10 123667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.+.++..++ +.+.+...+ ..+.+|.||+|+|..|+...
T Consensus 317 ~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~------~~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 317 TAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGH------GELRADKLLVATGRAPNTRS 369 (561)
T ss_pred HHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecC------CeEEeCEEEEccCCCcCCCC
Confidence 888888899999999999987654 444454433 25899999999999988653
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-07 Score=85.37 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~~ 41 (381)
.++++|||||.||++||..|.+. |.+|+|+|+.+.+||.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 37899999999999999999995 6799999999988874
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-06 Score=85.17 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|++|++||+.++++|.+|+|+|+....||
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 48999999999999999999999999999999886654
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=82.61 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++.+++|+++..++ +.+ .+.+++ .++.+|+||+|+|.+
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~------~~~~a~~VV~a~G~~ 256 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGG------GVITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCC------cEEeCCEEEECCCcc
Confidence 34556666677777899999999999998764 333 344443 468999999999987
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=83.81 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=78.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.. +. +. ...++.+.+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~~--~d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------RG--FDQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------cc--cCHHHHHHH
Confidence 579999999999999999999999999998742 10 10 124667777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++.+++.|+++++++.+..+...+ +...+...++. +..++.+|.||+|+|..|+...
T Consensus 227 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~~--~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 227 GEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDST--NGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred HHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecCC--cceEEEeCEEEEEecCCcCCCc
Confidence 888888899999999888887654 34445554431 1247999999999999987653
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-08 Score=91.27 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=39.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK 43 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~ 43 (381)
|+.+||+|||||+.|+.||..|+++|++|+|+|+++.+||.-+
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence 6679999999999999999999999999999999999998433
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-06 Score=83.95 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
++||+|||||.||++||..+++.|.+|+|+|+....
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 489999999999999999999999999999987644
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-07 Score=88.91 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=40.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
|+++||+|||||++|++||+.|.++|.+|+|+|+++.+||....
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 45699999999999999999999999999999999999996544
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.4e-07 Score=83.39 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=34.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
.++||+|||||++|+++|++|+++|.+|+++|+....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 4699999999999999999999999999999988643
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=83.68 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=77.2
Q ss_pred ccEEEECCCHHHHHHHHHHHh---CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNN---LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~---~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
.+++|||||+.|+.+|..+.. .|.+|+|+++.+.+. +. ...++.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~~~ 234 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RG--FDSTLR 234 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------cc--cCHHHH
Confidence 679999999999999976654 389999999876321 11 124677
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+.+++.++++++++.+.++...+ ++...+.+.++ .++.+|.||+|+|..|+..
T Consensus 235 ~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~g-----~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 235 KELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFESG-----KTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcCC-----CEEEcCEEEEeeCCCcCcc
Confidence 778888888899999999999997653 23334555444 5799999999999998765
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.7e-07 Score=86.73 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4799999999999999999999999999999875
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.1e-06 Score=83.51 Aligned_cols=137 Identities=17% Similarity=0.100 Sum_probs=79.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCC--cCCCCCCCee--ee-----------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASL--WKKRAYDRMK--LH----------------------- 53 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~--~~~~~~~~~~--~~----------------------- 53 (381)
++||+|||||.||++||..+++. |.+|+|+||....++. +......... .+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 58999999999999999999987 5799999998765542 1111000000 00
Q ss_pred -----cCC--cccccCCCCCCC---------CCC----------CCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEe
Q 035902 54 -----LAK--QFCELPHMPFPS---------RTP----------TFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYD 106 (381)
Q Consensus 54 -----~~~--~~~~~~~~~~~~---------~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~ 106 (381)
.+. .+..-...++.. .+. .-.+...+.+.+.+.+.+ .++.+..++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 000 000000011100 000 011355677777766655 47888889999988765
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 107 ENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 107 ~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+ +...-+...+...+....+.++.||+|||...
T Consensus 163 ~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 163 D-GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred C-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 4 22222222222223446799999999999874
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-06 Score=82.44 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|++||+.+++.|.+|+|+|+....||
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 48999999999999999999999999999999986665
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=84.52 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=78.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..+++.|.+|+|+++.+.+. +.+ ..++.+.+
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~i~~~l 284 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RKF--DETIINEL 284 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------ccC--CHHHHHHH
Confidence 679999999999999999999999999999876321 111 23566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++.+..+.++..++. +...+...++ .+.+.+|.|++|+|..|+...
T Consensus 285 ~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~----~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 285 ENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDG----RKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred HHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCC----CEEEECCEEEECcCCCCCccc
Confidence 7778888999999999999976532 2333333332 257999999999999887653
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-06 Score=84.15 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=30.6
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 6 vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
|+|||+|.||++||..+++.|.+|+|+|+...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999999999999999998733
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.3e-07 Score=90.35 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=78.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +.. -.......+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------------------------------~~~-ld~~~~~~l 188 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------------------------------AKQ-LDQTAGRLL 188 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------------------------------hhh-cCHHHHHHH
Confidence 579999999999999999999999999999875321 000 113455667
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++.+++.|+++++++.+.++..+. ....|.+.++ ..+.+|.||+|+|..|+..
T Consensus 189 ~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~dG-----~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 189 QRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKDG-----SSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred HHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECCC-----CEEEcCEEEECCCCCcCcH
Confidence 777788899999999998886543 3344667666 6799999999999998764
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.8e-07 Score=82.86 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=80.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|++|+.+|..++++|.+|+++|..+.+++. ... .++.+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-------------------------------~~~-~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-------------------------------LLD-PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-------------------------------hhh-HHHHHHH
Confidence 68999999999999999999999999999998855421 000 5788888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.+.+++++++++++..+..++......... +...++ ..+.+|.+++++|..|+
T Consensus 185 ~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 185 AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG-----EEIKADLVIIGPGERPN 238 (415)
T ss_pred HHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC-----cEEEeeEEEEeeccccc
Confidence 889999999999999999998765211111 344444 67999999999999985
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-06 Score=88.83 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||||||+|.||++||..+++.|.+|+|+|+....||
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 48999999999999999999999999999999987766
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-06 Score=82.43 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~ 40 (381)
++||+|||||.||++||+.+++. |.+|+|+||....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 48999999999999999999987 479999999875544
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=84.17 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=77.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+..|..+.+.|.+|+||++.+.+. +. ...++.+++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------------~~--~d~eis~~l 359 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------------PL--LDADVAKYF 359 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------cc--CCHHHHHHH
Confidence 579999999999999999999999999999876432 10 123566666
Q ss_pred HHHH-HHhCCccccccEEEEEEEeCCCCeEEEEEeecC---CC-------ceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYV-SQMGINPRYHRSVESASYDENAKAWIIVAKNTA---LD-------AYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~---~~-------~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+ ++.+++++.++.|.++...+......+...+.. .. +.+.+.+|.|++|+|..|+...
T Consensus 360 ~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 360 ERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred HHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 6654 567999999999999976542222334433211 00 1147999999999999988654
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=77.77 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|+++|+.+++.|.+|+|+|+...+||
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 48999999999999999999999999999999876665
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=81.65 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=73.3
Q ss_pred cEEEECCCHHHHHHHHHHHh--------------CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNN--------------LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRT 70 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~--------------~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (381)
+++|||||+.|+.+|..|+. .+.+|+||++.+.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------- 223 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------- 223 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------------------
Confidence 79999999999999999875 367899999875321
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 71 PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+.+ ..++.+.+++.+++.|+++++++.|.++..+ . +.++++ +++.+|.+|+|+|..|+
T Consensus 224 ~~~--~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~--v~~~~g-----~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 224 GSF--DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----E--VVLKDG-----EVIPTGLVVWSTGVGPG 281 (424)
T ss_pred ccC--CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----E--EEECCC-----CEEEccEEEEccCCCCc
Confidence 111 2356778888888899999999999888632 2 667666 67999999999998865
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=77.86 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=87.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceec-----------hhhHHHHHHHHhhCc---HHHHHHHHHHHh
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLT-----------REIVFAGMLLLKFLP---CKLVDFIVVMLS 234 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p-----------~~~~~~~~~~~~~l~---~~~~~~~~~~~~ 234 (381)
...++|||+|+.|+=+|..+++.|.+|.++.+.+. +-. -........+....| +.....+..+..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 35799999999999999999999999999998772 111 011111222333333 222222222222
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEE
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIF 308 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~ 308 (381)
.-+..-..++|+.........+-....+...+-+..+.++++.+|++++. |.++..+ .+.+.+|+++.||.+|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 22222233444432221111111111233344456678888999999998 8888765 35567888999999999
Q ss_pred ecCCCCCc
Q 035902 309 ATGYKSTV 316 (381)
Q Consensus 309 a~G~~p~~ 316 (381)
|+|-+..+
T Consensus 162 AtGG~S~P 169 (408)
T COG2081 162 ATGGKSWP 169 (408)
T ss_pred ecCCcCCC
Confidence 99955433
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=83.60 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.||++||+.++ .|.+|+|+||....++
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 489999999999999999996 5999999999876554
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=78.22 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|+++|..++++|.+|+|||++...||
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 58999999999999999999999999999999876655
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.5e-06 Score=80.20 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.||++||+.+++. .+|+|+|+....+|
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 48999999999999999999986 89999999876554
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-06 Score=80.88 Aligned_cols=37 Identities=24% Similarity=0.548 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+| +|++||..+++.|.+|+|+|+.+.+||
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 5899999999 899999999999999999999987776
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=75.08 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=31.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
.++||+|||||.||++|++.|+++|.++.||.+.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 1699999999999999999999999999999977
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-06 Score=81.05 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=76.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..|.+.|.+|+|+++.+.+. +. ...++..++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~l 299 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------RG--FDEEVRDFV 299 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 10 124666777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|+++++++.+.++...+ ++...+...++ ....+|.||+|+|..|+...
T Consensus 300 ~~~L~~~GV~i~~~~~v~~i~~~~-~g~v~v~~~~g-----~~~~~D~Viva~G~~Pnt~~ 354 (558)
T PLN02546 300 AEQMSLRGIEFHTEESPQAIIKSA-DGSLSLKTNKG-----TVEGFSHVMFATGRKPNTKN 354 (558)
T ss_pred HHHHHHCCcEEEeCCEEEEEEEcC-CCEEEEEECCe-----EEEecCEEEEeeccccCCCc
Confidence 778888899999999999987643 23333433322 34458999999999987653
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.7e-07 Score=89.20 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=71.7
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCC---CC--CcCCCCCCCeeeecC-------Cccccc-------CC
Q 035902 5 PVVIVGAGPAGLATSACLNNL--SVPNIILEREDCS---AS--LWKKRAYDRMKLHLA-------KQFCEL-------PH 63 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~---g~--~~~~~~~~~~~~~~~-------~~~~~~-------~~ 63 (381)
+|+||||||||+++|+.|++. |++|+|+|++... |. .........+....+ ..+..+ ..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999998 8999999998753 21 111111111100000 000000 00
Q ss_pred CCC-CCCCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 64 MPF-PSRTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 64 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
... ..... ....+.++.+.|.+.+.+.++++++++++.++.. ....+|.||.|+|..+
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------------~~~~~D~VVgADG~~S 141 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------------LAADADLVIASDGLNS 141 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------------hhcCCCEEEEcCCCCH
Confidence 000 00001 1256889999999999988999998887754321 1246899999999773
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-05 Score=78.61 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|+++|+.+++.|.+|+|||+....||
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 58999999999999999999999999999999876655
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-06 Score=79.56 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+| +|++||+++++.|.+|+|||+....||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4899999999 999999999999999999999876554
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-06 Score=75.46 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=76.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~~ 191 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKRL 191 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHHH
Confidence 689999999999999999999999999999875210 112345566
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCC-CceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTAL-DAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~-~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++.++.+.++..++ .+.-.+.+.++.. ++.+++.+|.||+|+|..|+..
T Consensus 192 ~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 192 MDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred HhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 666777799999999999987543 1222355554321 2335799999999999997754
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=78.46 Aligned_cols=37 Identities=38% Similarity=0.539 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
+.+|+|||||.+|+++|..|.++|++|+|+|+...+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 4689999999999999999999999999999876553
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-05 Score=77.62 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|++|+++|..+++.|.+|+|||+....||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 48999999999999999999999999999999876654
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=77.02 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=86.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
..|+++|+|..|+.+|..|...+.+||+|++.+..- +. .-...+.+.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------------------------------~~-lf~~~i~~~~ 261 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------------------------------PR-LFGPSIGQFY 261 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-------------------------------hh-hhhHHHHHHH
Confidence 469999999999999999999999999999886211 11 1234677778
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
+.+.+..+++++.++.+.+++-..+...-.|.+.++ ..+.+|.||+.+|..|+...+.
T Consensus 262 ~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg-----~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 262 EDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG-----KTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC-----CEeccCeEEEeecccccccccc
Confidence 888888899999999998887765445555778887 8999999999999999887654
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-07 Score=85.58 Aligned_cols=39 Identities=28% Similarity=0.523 Sum_probs=37.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+.++|+|||||+||++||.+|...|.+|+|+|..+++||
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 458999999999999999999999999999999999988
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.4e-06 Score=79.91 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.+.+|+++++.+.+. .. ..+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~~----~~l 393 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------AD----KVL 393 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------hh----HHH
Confidence 589999999999999999999999999998765210 01 123
Q ss_pred HHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
...+++ .|+++++++.+.++..++ ++...|.+.++..++.+.+.+|.|++|+|..|+..-
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~ 454 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEW 454 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchH
Confidence 334443 589999999998886543 122236666544444568999999999999987643
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.5e-06 Score=79.60 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|.+|+++|..++++|.+|+|+|+...+||
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999999999999999877666
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=77.90 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHH----hCCCCeEEEecCCCC
Q 035902 5 PVVIVGAGPAGLATSACLN----NLSVPNIILEREDCS 38 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~----~~g~~v~lie~~~~~ 38 (381)
||+|||||.||++||+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999997643
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.3e-06 Score=74.27 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=70.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. .. ..+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~----~~~ 182 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AE----KIL 182 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cC----HHH
Confidence 689999999999999999999999999999865210 01 122
Q ss_pred HHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++. ++++++++.+.++..++ ....+.+.+...+..+++.+|.||+|+|..|..
T Consensus 183 ~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 183 LDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT 240 (300)
T ss_pred HHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEecCCCceEEEEccEEEEeeCCCCCh
Confidence 3334444 89999999999887543 322344443323344789999999999988765
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-06 Score=75.43 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.||+|||||.+|.+.|+.|++.|.+|.+|||+-
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 799999999999999999999999999999973
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.2e-06 Score=78.41 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||||.||+.||..+++.|.+|+|+|+....+|
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 48999999999999999999999999999999875543
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-06 Score=79.04 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=32.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
.+|+|||||.+|+.||..|+++|.+|+|||+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999876543
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=77.77 Aligned_cols=61 Identities=20% Similarity=0.106 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeE-EEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAW-IIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+.+.+.+.+.+. +++++.++.++++..++ +.+ .+...+. ++...+.++.||+|||...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~--~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATA--GGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeC--CeEEEEECCEEEEcCCCCc
Confidence 456777777666654 88999998898876543 332 2333331 1224689999999999973
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-06 Score=72.08 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhh-CcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKF-LPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
..-+++|||+|++|+-+|..+++.|.+|.++.|.+. +-.. ...-...+... +.... ..+ ++..++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~-~Ggg-~~~gg~~~~~~~~~~~~-~~~-----------l~~~gi 85 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA-FGGG-SWGGGMLFSKIVVEKPA-HEI-----------LDEFGI 85 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCcc-ccCCCcceecccccchH-HHH-----------HHHCCC
Confidence 456799999999999999999999999999999872 2100 00000000000 00000 000 112233
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C-----eEEEc-----------CCcEeeccEE
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N-----EVEFE-----------NGKIEEFEAI 306 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~-----~v~~~-----------~g~~~~~D~v 306 (381)
+....+..+. ...++.+...+.+.+.+.+++++.+ ++.+.. + ++..+ +...++++.|
T Consensus 86 ~~~~~~~g~~---~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~V 162 (254)
T TIGR00292 86 RYEDEGDGYV---VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVV 162 (254)
T ss_pred CeeeccCceE---EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEE
Confidence 2221111110 0011223334455566677888777 555432 2 33332 2247899999
Q ss_pred EEecCCCCCcchhccccCCcc-cccC---CCCCCC--------CCCCCCCCCcEEEEeccccc--------cc--CccHH
Q 035902 307 IFATGYKSTVRNWLKRADKDF-FDEY---GMPKRN--------CPNHWKGENGLYCAGFSRTG--------LH--GISID 364 (381)
Q Consensus 307 i~a~G~~p~~~~~~~~~~~~~-~~~~---g~~~~~--------~~~~~~~~~~ifa~Gd~~~~--------~~--~a~~~ 364 (381)
|.|||.......++. +..++ .... |.-..+ ...+..-.|++|++|-..+. |. ....+
T Consensus 163 VdATG~~a~v~~~l~-~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~s 241 (254)
T TIGR00292 163 VDATGHDAEIVAVCA-KKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLS 241 (254)
T ss_pred EEeecCCchHHHHHH-HHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHh
Confidence 999998876655544 32222 1111 100000 00122346999999976543 21 56679
Q ss_pred HHHHHHHhhhccc
Q 035902 365 AKNIANDINLALT 377 (381)
Q Consensus 365 a~~~a~~i~~~l~ 377 (381)
|+.+|+.|.+.|+
T Consensus 242 g~~~a~~~~~~~~ 254 (254)
T TIGR00292 242 GKHVAEQILEKLK 254 (254)
T ss_pred hHHHHHHHHHHhC
Confidence 9999999988763
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5e-06 Score=72.27 Aligned_cols=193 Identities=19% Similarity=0.202 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH-HHHHHHhhhhhcCccccCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD-FIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (381)
..-+++|||+|++|+-+|..+++.|.+|.++.+.+. +-..... ... .++....+ ....+ ++..++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~-~Ggg~~~--gg~---~~~~~~v~~~~~~~--------l~~~gv 89 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS-FGGGMWG--GGM---LFNKIVVQEEADEI--------LDEFGI 89 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCCcccc--Ccc---ccccccchHHHHHH--------HHHCCC
Confidence 456899999999999999999999999999998762 1100000 000 00000000 00000 112233
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CC----eEEEc-----------CCcEeeccEEE
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RN----EVEFE-----------NGKIEEFEAII 307 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~----~v~~~-----------~g~~~~~D~vi 307 (381)
.......... ...+..+...+.+.+.+.+++++.+ ++.+. ++ ++... +..++.++.||
T Consensus 90 ~~~~~~~g~~---~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 90 RYKEVEDGLY---VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred CceeecCcce---eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 2211111000 0112233334555666678888877 55553 22 22221 22478999999
Q ss_pred EecCCCCCcchhccccCCc--ccccCCCCCCC--------CCCCCCCCCcEEEEecccccc--------c--CccHHHHH
Q 035902 308 FATGYKSTVRNWLKRADKD--FFDEYGMPKRN--------CPNHWKGENGLYCAGFSRTGL--------H--GISIDAKN 367 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~--~~~~~g~~~~~--------~~~~~~~~~~ifa~Gd~~~~~--------~--~a~~~a~~ 367 (381)
.|||........+. ...+ .....|.-..+ ...+..-.|++|++|-+.+.. . ....+|+.
T Consensus 167 ~ATG~~a~v~~~l~-~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~ 245 (257)
T PRK04176 167 DATGHDAEVVSVLA-RKGPELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKK 245 (257)
T ss_pred EEeCCCcHHHHHHH-HHcCCcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHH
Confidence 99997766543332 2111 01111111100 001222469999999775432 1 66679999
Q ss_pred HHHHhhhcccc
Q 035902 368 IANDINLALTD 378 (381)
Q Consensus 368 ~a~~i~~~l~~ 378 (381)
+|+.|.+.|+.
T Consensus 246 ~a~~~~~~~~~ 256 (257)
T PRK04176 246 VAELILEKLKK 256 (257)
T ss_pred HHHHHHHHhhc
Confidence 99999998864
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.8e-05 Score=78.91 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
++||+|||||.||++||+.+++.|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 48999999999999999999999999999999764
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=75.46 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+.+.+.+.+++.++++++++.|+++..+++.+.. .+...++ ...+.++.||+|||..
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~----~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG----THRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC----cEEEEcCEEEEcCCCc
Confidence 4567788888888899999999999998765212322 1232221 2578999999999976
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.2e-06 Score=73.97 Aligned_cols=131 Identities=13% Similarity=0.150 Sum_probs=71.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCCe------------e------eecC---Ccccc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDRM------------K------LHLA---KQFCE 60 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~------------~------~~~~---~~~~~ 60 (381)
+|||+|||||.||+.+|.+.++.|.+.+++-.+- .+|-...+..+.+. . ++.+ ....+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~LN 107 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVLN 107 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHhh
Confidence 4899999999999999999999999999988652 23321111111000 0 0000 00001
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCC-e---EEEEEeecCCCceEEEEeCEEEEc
Q 035902 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAK-A---WIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~-~---~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
...-|--........+..+..+++..+... ++.+ ....|.++...+.+. . -.|.+.+| ..+.++.||+.
T Consensus 108 rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~i-re~~V~dliv~~~~~~~~~~~gV~l~dg-----t~v~a~~VilT 181 (679)
T KOG2311|consen 108 RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEI-REGAVADLIVEDPDDGHCVVSGVVLVDG-----TVVYAESVILT 181 (679)
T ss_pred ccCCCcccChHHhhhHHHHHHHHHHHhccCCcchh-hhhhhhheeeccCCCCceEEEEEEEecC-----cEeccceEEEe
Confidence 111111111112334445555666555433 4443 344566665433221 1 12556666 78999999999
Q ss_pred cCCC
Q 035902 136 TGEN 139 (381)
Q Consensus 136 tG~~ 139 (381)
||.+
T Consensus 182 TGTF 185 (679)
T KOG2311|consen 182 TGTF 185 (679)
T ss_pred eccc
Confidence 9998
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-06 Score=82.47 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=36.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKK 44 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~ 44 (381)
++|+|||||+||++||+.|++.| .+|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 46999999999999999999987 899999999999985443
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-05 Score=67.69 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
..|+|||+|.||++++..+...+-.|+|+|+...+||.
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 35999999999999999999998889999999988873
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=74.51 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=68.7
Q ss_pred ccEEEECCCHHHHHHHHHHHh----CC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHH
Q 035902 4 VPVVIVGAGPAGLATSACLNN----LS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~----~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
++|+|||+|++|+.+|..|++ +| .+|+|+.... +. +. ...
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~-~l-------------------------------~~--~~~ 191 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGAS-LL-------------------------------PG--FPA 191 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCc-cc-------------------------------cc--CCH
Confidence 579999999999999999975 34 4788883321 10 10 123
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.+...+++.+++.+++++.++.+..++. +. +.+.++ ..+.+|.||+|+|..|.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~--v~~~~g-----~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD----GA--LILADG-----RTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC----Ce--EEeCCC-----CEEecCEEEEccCCChh
Confidence 5566777788888999999999988742 22 666655 67999999999999865
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=76.64 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=72.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||..|+.+|..|+..+.+|+|+++.+.+. .. ..+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~~----~~l 392 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------AD----QVL 392 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------cc----HHH
Confidence 689999999999999999999999999998875220 00 122
Q ss_pred HHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
...+. ..|+++++++.+.++..++ ...-.+.+.+...++.+.+.+|.|++|+|..|+..
T Consensus 393 ~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~ 452 (517)
T PRK15317 393 QDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTE 452 (517)
T ss_pred HHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEEEEeECCccCch
Confidence 33333 3589999999999987653 12222555554444556899999999999998654
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-06 Score=81.38 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=36.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++||+|||||++|++||..|++.|++|+|+|+++.+||.
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 368999999999999999999999999999999989883
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=71.96 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=69.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCe--eeecCC---cccccCCC------C-CCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRM--KLHLAK---QFCELPHM------P-FPS 68 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~--~~~~~~---~~~~~~~~------~-~~~ 68 (381)
.++|+|||||.++..++..|.+.+. +|+++-|+..+-.. ....+ ....+. .++..+.- . ...
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~----d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~ 265 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM----DDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRH 265 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGG
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC----ccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHh
Confidence 3789999999999999999999865 79999987632110 00000 000000 00011000 0 000
Q ss_pred CCCCCCCHHHHHHH-----HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 69 RTPTFVPRISFINY-----VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 69 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..-.-.+.+.+.+. -+....+..+.++.+++|+++...+ .+.|.+.+.+...++...+.+|.||+|||..
T Consensus 266 ~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 266 TNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp GTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred hcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 00011122222111 1222223356678899999999886 3479999999877788899999999999963
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.1e-06 Score=77.35 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=36.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 79999999999999999999999999999999999883
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=72.63 Aligned_cols=100 Identities=15% Similarity=0.011 Sum_probs=67.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+|+|||+|+.|+.+|..|.+.|.+ |+|+++..... . +.. ..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-------------------------------~--~~~----~~ 215 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-------------------------------A--PAG----KY 215 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-------------------------------C--CCC----HH
Confidence 5799999999999999999989987 99998764100 0 000 11
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec---------------CCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT---------------ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~---------------~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+.+++.++++++++.+.++...+ +.-.+.+.+. ..++...+.+|.||+|+|..|..
T Consensus 216 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 216 EIERLIARGVEFLELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred HHHHHHHcCCEEeeccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 2233566799999998888876432 2112332211 01234679999999999999764
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-06 Score=80.60 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=36.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~~ 41 (381)
++||+|||||++|++||+.|.+. |.+|+|+|+++.+||.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 37899999999999999999999 9999999999999984
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-06 Score=80.20 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=35.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+|+|||||++|++||+.|++.|.+|+|+|+++.+||.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 5999999999999999999999999999999999984
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-06 Score=78.33 Aligned_cols=38 Identities=32% Similarity=0.347 Sum_probs=36.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++|+|+|||.||++||+.|++.|++|+|+|.++.+||+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 47999999999999999999999999999999999983
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-06 Score=80.19 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=36.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~~ 41 (381)
+||+|||||++|++||+.|.++ |.+|+|+|+++.+||.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 7899999999999999999999 9999999999999984
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.7e-05 Score=66.77 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=35.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--CCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED--CSAS 40 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--~~g~ 40 (381)
|.+.||+|||+|.||+-+|.+|+..|.+|+|+|++. .+||
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 346899999999999999999999999999999864 4455
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-06 Score=79.38 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=35.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
.+|+|||||.+|++||+.|.+.|.+|+|+|+++.+||.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 47999999999999999999999999999999999883
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-05 Score=70.41 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.++.+.+.+++++.|++++++++|.++...++ ....|.+.++ ..+.+|+||+|.|-.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-~~~~v~~~~g-----~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-EVLGVKLTKG-----EEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-ceEEEEccCC-----cEEecCEEEEccCcc
Confidence 35677888999999999999999999998763 2456788877 789999999999965
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-06 Score=80.38 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=37.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCC-----CCeEEEecCCCCCCCcC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLS-----VPNIILEREDCSASLWK 43 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g-----~~v~lie~~~~~g~~~~ 43 (381)
+.+||+|||||++|++||+.|++.| .+|+|+|++..+||.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 4589999999999999999999887 89999999999998543
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.6e-06 Score=79.57 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=34.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhC------CCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL------SVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~------g~~v~lie~~~~~g~~ 41 (381)
++|+|||||++|++||+.|.+. +.+|+|+|+++.+||.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 5799999999999999999986 3799999999999984
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-06 Score=78.99 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=35.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+||+|||||.+|+++|..|+++|.+|+|+|++..+||
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 5899999999999999999999999999999998887
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.9e-05 Score=63.55 Aligned_cols=197 Identities=22% Similarity=0.273 Sum_probs=102.4
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcccc
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKY 244 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
.++....++|+|+|++|.-+|.+|++.|.+|.++.|+.. +--. .+--+..+.+..-.+-.+.+ ++..
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls-~GGG-~w~GGmlf~~iVv~~~a~~i-----------L~e~ 92 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS-FGGG-IWGGGMLFNKIVVREEADEI-----------LDEF 92 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc-cCCc-ccccccccceeeecchHHHH-----------HHHh
Confidence 344567899999999999999999999999999999862 1110 00000000000000000111 1233
Q ss_pred CCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CC----eEEEc-----------CCcEeeccE
Q 035902 245 GLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RN----EVEFE-----------NGKIEEFEA 305 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~----~v~~~-----------~g~~~~~D~ 305 (381)
+++....+...... ..+.+-..+....-+.+.++... ++.+- ++ ++..+ |.-.++++.
T Consensus 93 gI~ye~~e~g~~v~---ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~ 169 (262)
T COG1635 93 GIRYEEEEDGYYVA---DSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKA 169 (262)
T ss_pred CCcceecCCceEEe---cHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEE
Confidence 44433333211100 01111112222223334555554 33321 11 22221 334789999
Q ss_pred EEEecCCCCCcchhccccCCc-c-cccCCCCCCC--------CCCCCCCCCcEEEEeccccc--------cc--CccHHH
Q 035902 306 IIFATGYKSTVRNWLKRADKD-F-FDEYGMPKRN--------CPNHWKGENGLYCAGFSRTG--------LH--GISIDA 365 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~~~-~-~~~~g~~~~~--------~~~~~~~~~~ifa~Gd~~~~--------~~--~a~~~a 365 (381)
||-+||.....-.++. .... + .+-.|.-.-+ ...+..-.||+|++|-+.+. +. ....+|
T Consensus 170 VvDaTGHda~v~~~~~-kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSG 248 (262)
T COG1635 170 VVDATGHDAEVVSFLA-KRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSG 248 (262)
T ss_pred EEeCCCCchHHHHHHH-HhccccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhch
Confidence 9999999987755543 2111 0 1111110000 11333457999999976432 22 667899
Q ss_pred HHHHHHhhhcccc
Q 035902 366 KNIANDINLALTD 378 (381)
Q Consensus 366 ~~~a~~i~~~l~~ 378 (381)
+.+|+.|.+.|+.
T Consensus 249 kkaAe~i~e~L~~ 261 (262)
T COG1635 249 KKAAEEILEKLKL 261 (262)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988864
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.6e-06 Score=79.37 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=34.2
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 6 vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
|+|||||.+|++||..|++.|++|+|+|+++.+||.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~ 36 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGR 36 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCc
Confidence 689999999999999999999999999999998883
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=77.16 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=39.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAY 47 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~ 47 (381)
.+||+|||||++|++||+.|+++|. +|+|+|+++.+||.+....+
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~ 71 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANF 71 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecC
Confidence 3799999999999999999999998 69999999999986554333
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.7e-05 Score=70.35 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=69.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||..|+-+|..+.+.|.+|+++++.... ..+.....
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~---------------------------------~~~~~~~~---- 315 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE---------------------------------DMTARVEE---- 315 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc---------------------------------cCCCCHHH----
Confidence 68999999999999999999999999999987510 00111111
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEe---------ecC------CCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAW-IIVAK---------NTA------LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.++..++ ++.. .|.+. ++. .+....+.+|.||+|+|..|...
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDE-EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI 390 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcC-CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch
Confidence 123456699999898888886533 2322 23332 110 12235799999999999987754
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=71.30 Aligned_cols=98 Identities=24% Similarity=0.317 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--------------CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--------------SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSR 69 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--------------g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (381)
..++||||||.|+..|.+|+.. ..+|+++|..+.+=
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------ 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------ 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------------------
Confidence 4689999999999999999752 34888888776221
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 70 TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+ .-...+.+|.++++.+.++.+..++.|..+.. ....+.+.+| +.+.+.|-.||-|||..|.
T Consensus 269 -~--mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~~g---~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 269 -N--MFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTKDG---EIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred -H--HHHHHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcCCC---ceeeecceEEEecCCCCCc
Confidence 0 01346778888888888999999999988764 3333444433 4578999999999999854
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.8e-05 Score=75.86 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999764
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=68.93 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
.+|+|||+|.+|++||+.|.++ .+|||||.+..+||.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 7899999999999999999865 789999999888773
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.3e-05 Score=73.85 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++||+|||||..|..||.-.+-+|+++.++|+++.-.|+
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 389999999999999999999999999999998744443
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.1e-05 Score=72.47 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=66.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+. ....+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-----------------------------------~~~~~~--- 185 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-----------------------------------CAKLIA--- 185 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc-----------------------------------cCHHHH---
Confidence 679999999999999999999999999999875210 001111
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEE--EeCE----EEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEY--VARY----LVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~--~~d~----vIlAtG~~~~~~ 143 (381)
....++.++++++++.|..+..++ +.-.+.+.+...++...+ .+|. ||+|+|..|+..
T Consensus 186 ~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~ 249 (555)
T TIGR03143 186 EKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE 249 (555)
T ss_pred HHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChh
Confidence 223344589999999999887432 221233322212222333 3666 999999998764
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.5e-06 Score=75.96 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=40.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
+++||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 5699999999999999999999999999999999999996654
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.3e-05 Score=69.16 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=36.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+|++|||||.+|+.+|..|++.|.+|.|||+.+++||.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 79999999999999999999999999999999999984
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.5e-05 Score=75.95 Aligned_cols=36 Identities=36% Similarity=0.502 Sum_probs=34.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+|+|||||++|++||+.|.++|.+|+|+|+.+.+||
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999988887
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=68.55 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=67.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 82 (381)
++|+|||||..|+-+|..|.+.|.+|+++++... ..++. ..++
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~---------------------------------~~m~a~~~e~--- 325 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE---------------------------------EELPARVEEV--- 325 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc---------------------------------ccCCCCHHHH---
Confidence 6899999999999999999999999999987641 00111 1122
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEe---------ecC------CCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAK---------NTA------LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+.|+++++++.+..+..+++ +.. .|.+. +|. .++...+.+|.||+|+|..|...
T Consensus 326 --~~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 399 (464)
T PRK12831 326 --HHAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL 399 (464)
T ss_pred --HHHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh
Confidence 123455999988888887765432 221 12221 110 12335799999999999997653
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.6e-05 Score=73.00 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=32.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 78999999999999999999999999999976544
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=65.59 Aligned_cols=199 Identities=16% Similarity=0.201 Sum_probs=101.3
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhC-CCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccc
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSC-GACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFK 243 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~-g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.+...-+++|||+|.+|+-+|..|++. |.+|+++.+.. .+-.... .-...+..++-...... .+++
T Consensus 88 ~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~-~~GGG~~-~gg~l~~~~vv~~~a~e-----------~LeE 154 (357)
T PLN02661 88 ITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV-SPGGGAW-LGGQLFSAMVVRKPAHL-----------FLDE 154 (357)
T ss_pred hhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc-cccccee-eCcccccccccccHHHH-----------HHHH
Confidence 344556899999999999999999976 78999999876 2211000 00000000000000000 1223
Q ss_pred cCCCCCCCCCcccccccCCCccccchhhh-hhcCCCeEEccC--cceEeC--C---eEEEc------C--C------cEe
Q 035902 244 YGLERPKKGPFYFKAITGQTPTIDVGAMD-KIRKGEIQVFPS--ITSINR--N---EVEFE------N--G------KIE 301 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~--v~~v~~--~---~v~~~------~--g------~~~ 301 (381)
.+++..+.+.+... .....+...+.+ ..++.+++++.+ +..+-. + ++.+. + + ..+
T Consensus 155 lGV~fd~~dgy~vv---~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I 231 (357)
T PLN02661 155 LGVPYDEQENYVVI---KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVM 231 (357)
T ss_pred cCCCcccCCCeeEe---cchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEE
Confidence 34443332211110 011111122333 334578888887 454432 2 33321 1 1 268
Q ss_pred eccEEEEecCCCCCcchh-cc-ccCCccccc-CCCCCCC--------CCCCCCCCCcEEEEeccccc--------cc--C
Q 035902 302 EFEAIIFATGYKSTVRNW-LK-RADKDFFDE-YGMPKRN--------CPNHWKGENGLYCAGFSRTG--------LH--G 360 (381)
Q Consensus 302 ~~D~vi~a~G~~p~~~~~-~~-~~~~~~~~~-~g~~~~~--------~~~~~~~~~~ifa~Gd~~~~--------~~--~ 360 (381)
.++.||+|||-....-.. .. +...+...+ .|....+ .+.+..-.||+|++|-..+. +. .
T Consensus 232 ~AkaVVlATGh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~ 311 (357)
T PLN02661 232 EAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGA 311 (357)
T ss_pred ECCEEEEcCCCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHh
Confidence 999999999976543211 11 011222110 1111111 00222346999999976432 22 6
Q ss_pred ccHHHHHHHHHhhhccccC
Q 035902 361 ISIDAKNIANDINLALTDH 379 (381)
Q Consensus 361 a~~~a~~~a~~i~~~l~~~ 379 (381)
...+|+.+|+.|.+.|+..
T Consensus 312 m~~sg~k~a~~~~~~l~~~ 330 (357)
T PLN02661 312 MMISGQKAAHLALKALGLP 330 (357)
T ss_pred HHhhhHHHHHHHHHHHccc
Confidence 6789999999999988653
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.5e-05 Score=70.66 Aligned_cols=57 Identities=12% Similarity=0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..-+-..+...++.+|..++.++.|+++.... ++.+.|.+..| .+++.++|-|+|.+
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~G------~iet~~~VNaaGvW 242 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPHG------SIETECVVNAAGVW 242 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccCc------ceecceEEechhHH
Confidence 33444566677788999999999999998764 35556888776 69999999999987
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=71.59 Aligned_cols=39 Identities=36% Similarity=0.441 Sum_probs=37.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+.+||+|||||.+||++|+.|.+.|++|+|+|.++.+||
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 468999999999999999999999999999999998887
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=62.84 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC------CCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS------VPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g------~~v~lie~~~~~g 39 (381)
.++|+|+|||..|+++|+.|.+++ ..++|||...-.+
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 378999999999999999999986 6999999876333
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.5e-05 Score=77.18 Aligned_cols=39 Identities=36% Similarity=0.479 Sum_probs=36.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+++|+|||||++|++||..|+++|++|+|+|+++.+||.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 479999999999999999999999999999999888874
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00022 Score=62.27 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~ 36 (381)
++||+|||||-.|.+.|+.|.++ |++|+++|+++
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 58999999999999999999775 78999999986
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.1e-05 Score=70.57 Aligned_cols=38 Identities=37% Similarity=0.453 Sum_probs=34.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~ 41 (381)
.+|+|||||.||++||.+|.+.|. .++|+|..+++||-
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 689999999999999999998766 89999999999883
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.4e-05 Score=71.51 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=67.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH-------------HHHHHHHhhC-cHHHHHHHHH-HHhh
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV-------------FAGMLLLKFL-PCKLVDFIVV-MLSK 235 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~-------------~~~~~~~~~l-~~~~~~~~~~-~~~~ 235 (381)
+|+|||+|++|+=+|..+++.|.+|.++.|.+. ....... +...+...+. ...+....+. +...
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~-~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR-VGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS-S-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc-cccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 589999999999999999999999999999872 2111000 0000000000 0011111111 1111
Q ss_pred hhhcCccccCCCCCCC-CCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CCe---EEEcCCcEeeccEEE
Q 035902 236 MKFGNLFKYGLERPKK-GPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RNE---VEFENGKIEEFEAII 307 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~~---v~~~~g~~~~~D~vi 307 (381)
-...-+.+.|+..... +...+. ...+...+-+.+...+++.+++++.+ |..+. +++ |.+++++++.+|.||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP-~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFP-KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEE-TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECC-CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEE
Confidence 1111122334321111 111000 11122334455677778889999988 88885 344 555677899999999
Q ss_pred EecCCCCCc
Q 035902 308 FATGYKSTV 316 (381)
Q Consensus 308 ~a~G~~p~~ 316 (381)
+|+|-...+
T Consensus 160 LAtGG~S~p 168 (409)
T PF03486_consen 160 LATGGKSYP 168 (409)
T ss_dssp E----SSSG
T ss_pred EecCCCCcc
Confidence 999988654
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=63.83 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=75.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC-CcCCCC-CCCeeeecCCccc-ccCCCCCCCCCCCC---C
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS-LWKKRA-YDRMKLHLAKQFC-ELPHMPFPSRTPTF---V 74 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~ 74 (381)
+.||+|||+|.+|+++|+.+.++ +++|.|||.+-.+|| .|.-.. ++.|...-+.+.+ .....||.+. ..+ .
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYede-gdYVVVK 154 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDE-GDYVVVK 154 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccC-CCEEEEe
Confidence 36999999999999999999976 569999999877665 787543 3444444444332 2223333322 111 1
Q ss_pred CHHHHHH-HHHHHHHHhCCccccccEEEEEEEe-CCC---------CeEEEEEe-ecCC--CceEEEEeCEEEEccCCC
Q 035902 75 PRISFIN-YVDNYVSQMGINPRYHRSVESASYD-ENA---------KAWIIVAK-NTAL--DAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~-~~~---------~~~~v~~~-~~~~--~~~~~~~~d~vIlAtG~~ 139 (381)
....+.. .+...+...++.+.--+.+.++... .+. .+|++... ++.+ .++..+++..|+-+||-.
T Consensus 155 HAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tGHD 233 (328)
T KOG2960|consen 155 HAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTGHD 233 (328)
T ss_pred eHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccCCC
Confidence 1122221 2233344445544333333332211 111 23655443 3333 345678888888888876
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00033 Score=66.71 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=68.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+|+|||||..|+.+|..|.+.|. +|+++++.... .++.....
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~---------------------------------~~~~~~~~--- 317 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE---------------------------------EMPASEEE--- 317 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc---------------------------------cCCCCHHH---
Confidence 689999999999999999999988 89999876411 00111111
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEee---------c-----CCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKN---------T-----ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---------~-----~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|+++++++.+..+..++. +.-.|.+.. + ..+....+.+|.||+|+|..|..
T Consensus 318 -~~~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 318 -VEHAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred -HHHHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 2345567999999998888865431 111122221 0 01234679999999999999873
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.6e-05 Score=73.41 Aligned_cols=36 Identities=36% Similarity=0.369 Sum_probs=34.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+|+|||||++|+++|+.|.+.|++|+|+|+++.+||
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999998887
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.9e-05 Score=74.64 Aligned_cols=38 Identities=32% Similarity=0.523 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--CCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED--CSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--~~g~ 40 (381)
++||+|||+|.||++||..+++.|.+|+|+|+.. ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 5899999999999999999999999999999988 5555
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.2e-05 Score=66.21 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=74.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhC----CCCe-EEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL----SVPN-IILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~----g~~v-~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
..|.|||+|+-|..+|+.|.++ |.+| -+|+....++ -+-...
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------------------------kiLPey 394 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------------------------KILPEY 394 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------------------------hhhHHH
Confidence 5799999999999999999875 3343 3333322111 011223
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.++..+..++.|+.++-+..|.++..+. ++..+.+++| .+++.|.||+|+|..|+..
T Consensus 395 ls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~dG-----~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 395 LSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSDG-----SELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred HHHHHHHHHHhcCceeccchhhhhhhhhc--cceEEEecCC-----CeeeeeeEEEEecCCCchh
Confidence 44555667788899999999999998876 7777889998 8999999999999998754
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00016 Score=67.01 Aligned_cols=146 Identities=21% Similarity=0.190 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH----HHHHHHHhhCcHHHHHHHHHHH---hhhhhcCc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV----FAGMLLLKFLPCKLVDFIVVML---SKMKFGNL 241 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 241 (381)
.++|+|||+|++|+-+|..|++.|.+|+++.+.+. +.+.... .-...+.+.+. ..+.+.... ....+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~~g~g~~l~~~~~~~l~~~g--l~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE-WRVYGAGITLQGNALRALRELG--VLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC-CccCCceeeecHHHHHHHHHcC--CHHHHHHhCCCccceEEECC
Confidence 56899999999999999999999999999998873 2111000 11111111111 011111100 00000000
Q ss_pred cccC---CCCCCCC-CcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEEecC
Q 035902 242 FKYG---LERPKKG-PFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIFATG 311 (381)
Q Consensus 242 ~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~a~G 311 (381)
.... +..+... ..+.....-.++.+...+.+.+.+.+++++.+ +++++.+ .+.+.+|+++.+|.||.|+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 0000 0000000 00000001112233344555666667888776 7777542 35677898999999999999
Q ss_pred CCCCcc
Q 035902 312 YKSTVR 317 (381)
Q Consensus 312 ~~p~~~ 317 (381)
..+...
T Consensus 161 ~~s~~r 166 (375)
T PRK06847 161 LYSKVR 166 (375)
T ss_pred CCcchh
Confidence 877653
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.69 E-value=5e-05 Score=75.58 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=36.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
..+|+|||||++|++||+.|.+.|.+|+|+|++..+||.
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 478999999999999999999999999999999988874
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00015 Score=68.32 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=75.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.-+++|||+|++|.-+|..|++.|.+|.++.+.+....|+...-.... .+.+. +.+.+...|......-...... .
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lg--l~~~l~~~w~~~~v~~~~~~~~-~ 103 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALG--LLDCLDTTWPGAVVYIDDGKKK-D 103 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCC--cHHHHHhhCCCcEEEEeCCCCc-c
Confidence 347999999999999999999999999999987632223211100001 11111 1111111121111000000000 0
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC----eEEEcCCcEeeccEEEEecCCCCC
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN----EVEFENGKIEEFEAIIFATGYKST 315 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 315 (381)
....... -.+..+...+.+.+.+.+++++.. |++++.+ .|.+++|+++++|.||.|+|....
T Consensus 104 ~~~~y~~-----V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 104 LDRPYGR-----VNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccCccee-----EEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0000000 011223334455556678888766 7777643 477789989999999999998764
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00033 Score=62.90 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=78.2
Q ss_pred cEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCCCcCCCCCCCeeee--cCC---cccccCCC------CCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSASLWKKRAYDRMKLH--LAK---QFCELPHM------PFPSR 69 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~~~~~~~~~~~~~~--~~~---~~~~~~~~------~~~~~ 69 (381)
.|+|||+|-++..+-+.|... ..++..|-|+.-. ....|..+... .|. .++.++.- .....
T Consensus 189 ~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf----~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~ 264 (436)
T COG3486 189 SVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF----LPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRL 264 (436)
T ss_pred eEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC----CccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCc
Confidence 399999999999999999875 2245556665411 11112221111 000 01111100 00000
Q ss_pred CCCCCCHHHHHHHHHHHHH------HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 70 TPTFVPRISFINYVDNYVS------QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.-.-++.+.+.+.+..+.+ +.++.++.+++|+++....+ +.+.+.+.+...++.+++++|.||+|||.....|
T Consensus 265 ~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 265 LYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGELETVETDAVILATGYRRAVP 343 (436)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceEEEEEeeccCCCceEEEeeEEEEecccccCCc
Confidence 0012233333332222222 23455678899999998764 5588999888888889999999999999997666
Q ss_pred CC
Q 035902 144 EV 145 (381)
Q Consensus 144 ~~ 145 (381)
.+
T Consensus 344 ~f 345 (436)
T COG3486 344 SF 345 (436)
T ss_pred hh
Confidence 43
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.2e-05 Score=72.54 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=36.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
+||+|||+||+|+.+|+.|++.|++|++||+....++.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999998777666
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00077 Score=60.55 Aligned_cols=34 Identities=41% Similarity=0.634 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~ 36 (381)
.+||+|+||||.|.+.|..|... .+++.|+|...
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 58999999999999999999865 45999999873
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0014 Score=66.45 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=67.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+-+|..+.+.|.+ |+++++.+.. .++. ...++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~------------------------------~~~~--~~~e~--- 615 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE------------------------------EMPA--RLEEV--- 615 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHH---
Confidence 6899999999999999999999987 9999976410 0011 11122
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEe---------ecC------CCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAK---------NTA------LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+++.|+++++++.+..+..+++ +.. .+.+. ++. .+....+.+|.||+|+|..|...
T Consensus 616 --~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~ 689 (752)
T PRK12778 616 --KHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL 689 (752)
T ss_pred --HHHHHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc
Confidence 224556899888888877765431 221 12221 110 12345799999999999997653
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.7e-05 Score=72.53 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=35.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++|+|||||++|+++|+.|.+.|++|+|+|+.+.+||.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~ 113 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGK 113 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCc
Confidence 58999999999999999999999999999999988874
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00071 Score=64.63 Aligned_cols=110 Identities=11% Similarity=0.059 Sum_probs=66.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+-+|..+.+.|. +|++++.....+..+ . ....++.++.. .
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~---------------------~-~~~~~~~~~~~-----~ 334 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR---------------------N-KNNPWPYWPMK-----L 334 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc---------------------c-cccCCcccchH-----H
Confidence 679999999999999999888876 788776554211000 0 00000111111 1
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEe-----ec----CCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAK-----NT----ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~-----~~----~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+.+.+.|+.+++++.+.++..++ +... |... ++ ..++.+.+.+|.||+|+|..|..
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~ 402 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE 402 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCc
Confidence 1233455689999998888886432 3321 2222 11 11334679999999999988753
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.2e-05 Score=72.48 Aligned_cols=38 Identities=39% Similarity=0.536 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
.++|+|||||++|+++|+.|.++|.+++|+|+.+.+||
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 37899999999999999999999999999999887777
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=68.15 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=76.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce--echhhH--HHHHHHHhhCcHHHHHHHHHHHhhhhhcCcccc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV--LTREIV--FAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKY 244 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~--~p~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+... -++... .-...+.+.+. ..+.+...-...........
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lG--l~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRG--IADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcC--cHHHHHhcCCccccceeeeE
Confidence 3579999999999999999999999999999987321 111110 11111111111 11111110000000000000
Q ss_pred CCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCCcEeeccEEEEecCCCCCcc
Q 035902 245 GLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
.+................++.+...+.+.+++.+++++.+ ++.+..+ + +.+.+|+++.+|.||.|.|..+...
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 0100000000000000112233344455666678888877 7776543 3 4556788899999999999877553
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=61.47 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=33.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
|++..|-|||||.||..+|++++++|.+|.|+|-.+.
T Consensus 1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 1 MMQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 5667899999999999999999999999999997753
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.7e-05 Score=67.12 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS-VPNIILEREDC 37 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~ 37 (381)
||++|||+|++|..+|.+|++.+ .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999997 69999999863
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00024 Score=64.72 Aligned_cols=133 Identities=16% Similarity=0.180 Sum_probs=67.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce--echhhH-------HHHHHHHhhCcHHHHHHHHHHHhhhhhcCc
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV--LTREIV-------FAGMLLLKFLPCKLVDFIVVMLSKMKFGNL 241 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~--~p~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (381)
+|+|||||..|+|+|..+++.|.+|.++......+ ++.... .+...+ ..+........ .. ..+ ..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Ei-dalgg~m~~~a-D~--~~i--~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREI-DALGGLMGRAA-DE--TGI--HF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHH-HHTT-SHHHHH-HH--HEE--EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHH-hhhhhHHHHHH-hH--hhh--hh
Confidence 48999999999999999999999999994332121 111100 111111 01111111100 00 000 00
Q ss_pred cccCCCC-CCCCCcccccccCCCccccchhhhhhcC-CCeEEccC-cceEeCC-----eEEEcCCcEeeccEEEEecCC
Q 035902 242 FKYGLER-PKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS-ITSINRN-----EVEFENGKIEEFEAIIFATGY 312 (381)
Q Consensus 242 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~ 312 (381)
+..+..+ |....+ .....+..+...+.+.+++ .+++++.. |+.+..+ +|.+.+|+.+.+|.||+|||.
T Consensus 75 ~~lN~skGpav~a~---r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 75 RMLNRSKGPAVHAL---RAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEESTTS-GGCTEE---EEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hcccccCCCCccch---HhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 1100000 000000 0001112233344555665 78999888 8887542 688899999999999999999
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=62.65 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=66.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++++|||+|..|+.+|..+.+.|. +|+|+++.+... . +. ...++
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~------------------------~------~~--~~~e~--- 327 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN------------------------M------PG--SRREV--- 327 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc------------------------C------CC--CHHHH---
Confidence 679999999999999999999986 799999865210 0 00 11122
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEe---e------c------CCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAK---N------T------ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---~------~------~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.+.|+++++++.+..+..+++ +.. .|++. . + ..++...+.+|.||+|+|..|..
T Consensus 328 --~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 400 (467)
T TIGR01318 328 --ANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA 400 (467)
T ss_pred --HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc
Confidence 234556899999988888865431 221 12221 1 1 01234679999999999998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00071 Score=70.37 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+|+|||+|+.|+.+|..|++.|. .|+|+|..+.+ ...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~~ 356 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SPE 356 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hHH
Confidence 589999999999999999999996 57899876411 112
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+++.++.++.++.+..+..++ ..-.|.+... .++.+.+.+|.|+++.|..|+..
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~~--~v~~V~l~~~-~g~~~~i~~D~V~va~G~~Pnt~ 414 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGGK--RVSGVAVARN-GGAGQRLEADALAVSGGWTPVVH 414 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecCC--cEEEEEEEec-CCceEEEECCEEEEcCCcCchhH
Confidence 3345667799999999998886533 2112444321 11236799999999999998754
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.1e-05 Score=62.03 Aligned_cols=32 Identities=31% Similarity=0.633 Sum_probs=29.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+++|||+|+.|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996655
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00016 Score=72.28 Aligned_cols=40 Identities=33% Similarity=0.393 Sum_probs=37.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
.++|+|||||++|+.+|..|.+.|.+|+|+|+.+.+||.+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 3789999999999999999999999999999999998844
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=64.86 Aligned_cols=102 Identities=14% Similarity=0.028 Sum_probs=66.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+-+|..+.+.|. +|+++.+.+... ++.....
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~---------------------------------~~~~~~e--- 512 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN---------------------------------MPGSKKE--- 512 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC---------------------------------CCCCHHH---
Confidence 579999999999999999999986 699998764210 1111111
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe---------ecC------CCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK---------NTA------LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+.+.|+++++++.+.++..++++..-.|.+. +|. .++...+.+|.||+|.|..|..
T Consensus 513 -~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 586 (654)
T PRK12769 513 -VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHG 586 (654)
T ss_pred -HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCc
Confidence 1235556999988888887764332221112321 111 1234579999999999998764
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=61.12 Aligned_cols=38 Identities=32% Similarity=0.284 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~~v~lie~~~~~g~ 40 (381)
+++.=|||+|.|+|++|..|.+- |.+|+|+|+.+..||
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 35678999999999999999886 559999999876665
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0036 Score=62.23 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=66.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+.+|..+.+.|. +|+|+.+.... ..+. ...++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~------------------------------~mpa--~~~ei~~- 370 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE------------------------------EMPA--NRAEIEE- 370 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHHHH-
Confidence 689999999999999999999987 59999876410 0011 1223322
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEE---EeecC------------CCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIV---AKNTA------------LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~---~~~~~------------~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
. .+.|+.+++++.+.++..++ +...+. +..+. .+....+.+|.||+|+|..|...
T Consensus 371 ---a-~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ 440 (652)
T PRK12814 371 ---A-LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP 440 (652)
T ss_pred ---H-HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc
Confidence 2 23489998888887776543 221121 22211 12345799999999999987643
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00021 Score=73.39 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+. +- .+-+++++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~-~G---------------------------------G~l~yGIP 350 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD-LG---------------------------------GVLRYGIP 350 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC-CC---------------------------------ceEEccCC
Confidence 589999999999999999999999999999998761 10 11112221
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecCCC-CC
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGYK-ST 315 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~-p~ 315 (381)
..+.+ ..+-+...+.+++.+++++.++. .+..+.+++.....+|.||+|||.. |.
T Consensus 351 ~~rlp-----------~~vi~~~i~~l~~~Gv~f~~n~~--vG~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 351 EFRLP-----------NQLIDDVVEKIKLLGGRFVKNFV--VGKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred CCcCh-----------HHHHHHHHHHHHhhcCeEEEeEE--eccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 10000 00111224556667888776611 1234666666667899999999994 54
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00016 Score=65.12 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=34.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC--eEEEecCCCCCCCc
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP--NIILEREDCSASLW 42 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~--v~lie~~~~~g~~~ 42 (381)
.+|+|+|||.+|+++|++|++++.+ ++|+|..+.+||-.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 7899999999999999999999764 56799999999843
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=8.3e-05 Score=62.44 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=24.6
Q ss_pred EEEcCCCCHHHHHHHHhhCCCe-eEEEEecC
Q 035902 173 LVVGCGNSGMEIAYDLSSCGAC-TSIVVRGP 202 (381)
Q Consensus 173 ~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~ 202 (381)
+|||+|++|+-+|..|.+.|.+ |.++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999998 99999986
|
... |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00021 Score=67.77 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhh--CCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSS--CGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~--~g~~v~~i~r~~ 202 (381)
.+++|+|||+|+.|+.+|..|++ .|.+|+++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 57899999999999999999986 689999999988
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=57.20 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~ 38 (381)
++|+||||||..|++.|.+|.-+ +.+|.|+|++..+
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 58999999999999999998877 7899999998644
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00019 Score=74.61 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=38.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
++|+|||||++|+++|+.|.+.|++|+|+|+...+||.+..
T Consensus 694 ~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 78999999999999999999999999999999999986544
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00075 Score=62.99 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCccee-ch-------hhHHHHHHHHhhCcHHHHHHHHHH----Hhhh
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVL-TR-------EIVFAGMLLLKFLPCKLVDFIVVM----LSKM 236 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~-p~-------~~~~~~~~~~~~l~~~~~~~~~~~----~~~~ 236 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++.|.+.... +. ....-...+.+.+.. .+.+... ....
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGV--WPAVRAARAQPYRRM 83 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCc--hhhhhHhhCCcccEE
Confidence 45799999999999999999999999999999862100 00 001111122222211 1111110 0000
Q ss_pred hhcCcc---ccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEE
Q 035902 237 KFGNLF---KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAII 307 (381)
Q Consensus 237 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi 307 (381)
...+.. ...+.....+..... ....+..+...+.+.+++.+++++.+ ++++..+ .+.+++|+++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 162 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLG-WIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAI 162 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCE-EEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEE
Confidence 000000 000000000000000 00112233444566677778888877 7776543 3556788899999999
Q ss_pred EecCCCCCcc
Q 035902 308 FATGYKSTVR 317 (381)
Q Consensus 308 ~a~G~~p~~~ 317 (381)
.|.|......
T Consensus 163 ~AdG~~S~vr 172 (392)
T PRK08773 163 AADGAASTLR 172 (392)
T ss_pred EecCCCchHH
Confidence 9999987653
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00061 Score=65.38 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++++|+|+|.+|+++|..|.+.|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999999999998765
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=61.16 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++|+|||+|+.|+-+|..|++.|.+|+++.+++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 579999999999999999999999999999987
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0028 Score=64.81 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=62.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-C-CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-S-VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-g-~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
++|+|||||..|+-+|..+.+. | .+|+++.+.... ..+. ...++..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~------------------------------~MPA--~~eEle~ 716 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQ------------------------------EMPA--WREEYEE 716 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcc------------------------------cccc--cHHHHHH
Confidence 6899999999999999998887 4 389999986410 0010 1223333
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEE---Ee----ec-----CCCceEEEEeCEEEEccCCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIV---AK----NT-----ALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~---~~----~~-----~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+ +.|+++++.+.+..+..+ +...+. +. ++ ..++...+.+|.||+|+|..|...
T Consensus 717 Al-----eeGVe~~~~~~p~~I~~d---G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnte 782 (1019)
T PRK09853 717 AL-----EDGVEFKELLNPESFDAD---GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTE 782 (1019)
T ss_pred HH-----HcCCEEEeCCceEEEEcC---CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChh
Confidence 22 348888887777777431 111110 00 00 012346799999999999997654
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00074 Score=65.21 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.|+|||||+.|+++|..+++.|.+|.++++..
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 469999999999999999999999999999874
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00089 Score=62.39 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=69.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPK 250 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (381)
+++|||+|+.|+-+|..|++.|.+|.++.+.+....+....-....+. .+. +.+.+...|............. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~---~ 74 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLS-DLG--LADCVEHVWPDVYEYRFPKQPR---K 74 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhh-hhc--hhhHHhhcCCCceEEecCCcch---h
Confidence 489999999999999999999999999998763211111000000000 000 0011111111100000000000 0
Q ss_pred CCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC-----eEEEcCCcEeeccEEEEecCCCC
Q 035902 251 KGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN-----EVEFENGKIEEFEAIIFATGYKS 314 (381)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p 314 (381)
....+ ..-.+..+...+.+.+.+.+++++.. +..+..+ .+.+++|+++.++.||.|+|..+
T Consensus 75 ~~~~~---~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 75 LGTAY---GSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCce---eEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00000 00111223334455556667787766 6666433 35667888999999999999766
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00035 Score=68.33 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHh-CCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNN-LSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~-~g~~v~lie~~~ 36 (381)
++|++|||||++|+.+|..|++ .|.+|+|+|+..
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4899999999999999999999 799999999985
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.004 Score=55.46 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=71.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||-+++..|+.|.+.+.+|+++-+.+.+- .. +.+
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~~ 184 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EIL 184 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HHH
Confidence 689999999999999999999999999998876321 11 222
Q ss_pred HHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++. ++.+++++.+..+.-++ -.. |.+.+.. ++...+.+|.++++.|..|..
T Consensus 185 ~~~l~~~~~i~~~~~~~i~ei~G~~-v~~--v~l~~~~-~~~~~~~~~gvf~~iG~~p~~ 240 (305)
T COG0492 185 VERLKKNVKIEVLTNTVVKEILGDD-VEG--VVLKNVK-GEEKELPVDGVFIAIGHLPNT 240 (305)
T ss_pred HHHHHhcCCeEEEeCCceeEEecCc-cce--EEEEecC-CceEEEEeceEEEecCCCCch
Confidence 3333333 78889999998886543 122 6666543 455789999999999999775
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00048 Score=64.12 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHH-HHHHHHHh----hhhhcCcc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLV-DFIVVMLS----KMKFGNLF 242 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~-~~~~~~~~----~~~~~~~~ 242 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+..+.+.. -..+.....+.|..-.. +.+..... .....+-.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 35799999999999999999999999999999832333221 11111112222211111 22211000 00000000
Q ss_pred --ccCCCCCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeCC----eEEEc-CCcEeeccEEEEecCC
Q 035902 243 --KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINRN----EVEFE-NGKIEEFEAIIFATGY 312 (381)
Q Consensus 243 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~~----~v~~~-~g~~~~~D~vi~a~G~ 312 (381)
...+.....+. ......-.+..+...+++.+.+ .+++++.+ |+.++.+ .+.+. +|+++.||.+|-|-|.
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 82 RRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred ceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCC
Confidence 00000000000 0000111123444556677665 45899887 8887654 36777 9999999999999986
Q ss_pred CCC
Q 035902 313 KST 315 (381)
Q Consensus 313 ~p~ 315 (381)
...
T Consensus 161 ~S~ 163 (387)
T COG0654 161 NSA 163 (387)
T ss_pred chH
Confidence 543
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00084 Score=61.92 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=29.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
.++|||+|..|+.+|..|++. |.+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 479999999999999999987 89999999876
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00065 Score=63.49 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+.+|+|||+|..|+-+|..|++.|.+|+++.|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 5789999999999999999999999999999987
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=63.81 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 469999999999999999999999999999987
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00081 Score=62.64 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 469999999999999999999999999999987
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0008 Score=59.95 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+++|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999987
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=61.00 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999886
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=59.78 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||+|.+|+.+|..|++.|.+|+++.|.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45789999999999999999999999999999987
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.022 Score=56.64 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=65.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||+|..|+-+|..+.+.|. +|+++.+.+... ++. ...++..
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~------------------------------~~~--~~~e~~~- 498 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS------------------------------MPG--SRKEVVN- 498 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc------------------------------CCC--CHHHHHH-
Confidence 689999999999999999888885 799998764210 010 1123322
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEE---ee------cC------CCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVA---KN------TA------LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~---~~------~~------~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.|+++++++.+..+..+++ +.. .+.+ .. |. .+....+.+|.||+|.|..|..
T Consensus 499 ----a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~ 569 (639)
T PRK12809 499 ----AREEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA 569 (639)
T ss_pred ----HHHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCc
Confidence 3456999998888888764431 221 1221 11 10 1234679999999999988653
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=62.14 Aligned_cols=34 Identities=29% Similarity=0.665 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.-+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3579999999999999999999999999999987
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0022 Score=56.43 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=77.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++++|||||+.++..|--++-.|.++.++=|.+.+- .. -.+.+.+.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL----------------------R~-----------FD~~i~~~ 235 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL----------------------RG-----------FDEMISDL 235 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh----------------------cc-----------hhHHHHHH
Confidence 3789999999999999999999999998887765210 00 12345566
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
+.+.++.-+++++.++.++.+....+ +...+...++ .....|.|+.|+|-.|+...+
T Consensus 236 v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~-----~i~~vd~llwAiGR~Pntk~L 292 (478)
T KOG0405|consen 236 VTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHG-----TIEDVDTLLWAIGRKPNTKGL 292 (478)
T ss_pred HHHHhhhcceeecccccceeeeecCC-CceEEEEecc-----ccccccEEEEEecCCCCcccc
Confidence 66667777999999999999887653 4344555554 445699999999999887654
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0013 Score=62.45 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 789999999999999999999999999998864
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00083 Score=62.13 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=72.3
Q ss_pred eEEEEcCCCCHHHHHHHH--hhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDL--SSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l--~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.++|||+|+.|.-+|..| +..|.+|.++.+.+....+... .-......+. .+.+.+...|..+.......... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~--tW~~~~~~~~-~~~~~v~~~w~~~~v~~~~~~~~-~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR--TWCFWEKDLG-PLDSLVSHRWSGWRVYFPDGSRI-L 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc--cccccccccc-chHHHHheecCceEEEeCCCceE-E
Confidence 479999999999999999 7788999999987733112111 0001111000 01111112221111100000000 0
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC----eEEEcCCcEeeccEEEEecCCCCC
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN----EVEFENGKIEEFEAIIFATGYKST 315 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 315 (381)
...... .-.+..+...+.+.+...++.++.. |++++.+ .+.+.+|+++.++.||-|.|..+.
T Consensus 77 ~~~~Y~-----~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYC-----MIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceE-----EEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 000000 0011223333455555556666666 8888765 357889999999999999997654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.004 Score=57.03 Aligned_cols=57 Identities=9% Similarity=0.009 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+...+.+.+...+++.++.++++++|.++ ++ +.|.+.+..+ ...+++|+||+|||..
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~~----~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPDG----QSTIEADAVVLALGGA 140 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECCC----ceEEecCEEEEcCCCc
Confidence 56789999999999999999999999999 22 3477776432 1469999999999985
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=60.52 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999987
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0021 Score=60.26 Aligned_cols=144 Identities=18% Similarity=0.147 Sum_probs=75.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecCcceechhh------HHHHHHHHhhCcHHHHHHHHHHH---hhhhhc
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGPVHVLTREI------VFAGMLLLKFLPCKLVDFIVVML---SKMKFG 239 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~~~~~p~~~------~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~ 239 (381)
+|+|||+|+.|+-+|..|++.| .+|+++.+.+. ..+... ..-+..+.+.+.. .+.+.... ....+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~-~~~~~~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA-GAWSRDPRASAIAAAARRMLEALGV--WDEIAPEAQPITDMVIT 79 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc-ccCCCCcceEEecHHHHHHHHHCCC--hhhhhhhcCcccEEEEE
Confidence 5899999999999999999986 89999999872 211110 0112222222211 11111100 000000
Q ss_pred CccccCCCCC---CCCC----cccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEE
Q 035902 240 NLFKYGLERP---KKGP----FYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAI 306 (381)
Q Consensus 240 ~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~v 306 (381)
+......... .... .......-.+..+...+.+.+.+.+++++.+ +++++.+ .+.+++|+++.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL 159 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence 0000000000 0000 0000000112234445566666678888877 7777543 356678889999999
Q ss_pred EEecCCCCCcc
Q 035902 307 IFATGYKSTVR 317 (381)
Q Consensus 307 i~a~G~~p~~~ 317 (381)
|.|.|......
T Consensus 160 I~AdG~~S~vr 170 (403)
T PRK07333 160 VAADGARSKLR 170 (403)
T ss_pred EEcCCCChHHH
Confidence 99999876543
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=60.18 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|.-+|..|++.|.+|++++|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 48999999999999999999999999999997
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0088 Score=62.27 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=64.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (381)
++|+|||||..|+-+|..+.+.|.+ |+++.+.... ..+. ..++
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~---------------------------------em~a~~~e~-- 616 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA---------------------------------EAPARIEEI-- 616 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc---------------------------------cCCCCHHHH--
Confidence 6899999999999999999999884 7777765310 0111 1111
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEee---------c-----CCCceEEEEeCEEEEccCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKN---------T-----ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~---------~-----~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.+.|+++++++.+..+..+++ +.. .+.+.. | ..++...+.+|.||+|.|..|..
T Consensus 617 ---~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 617 ---RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred ---HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh
Confidence 224556999988888877754332 221 122211 1 01233579999999999999774
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0013 Score=66.45 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 368999999999999999999999999999999764
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=60.58 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=73.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecCcceechh------h--HHHHHHHHhhCcHHHHHHHHHHHh---hhhh
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGPVHVLTRE------I--VFAGMLLLKFLPCKLVDFIVVMLS---KMKF 238 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~~~~~p~~------~--~~~~~~~~~~l~~~~~~~~~~~~~---~~~~ 238 (381)
+|+|||+|++|+-+|..|++.| .+|+++.|.+. .-+.. . ..-...+.+.+.. .+.+..... ...+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~-~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP-SAAQPGFDARSLALSYGSKQILEKLGL--WPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc-cccCCCCCCeeEeccHHHHHHHHHCCC--hhhhHhhcCccceEEE
Confidence 4899999999999999999999 99999999872 22210 0 0111122222211 111111000 0000
Q ss_pred cCccccCCC---CCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeC--C--eEEEcCCcEeeccEEEE
Q 035902 239 GNLFKYGLE---RPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINR--N--EVEFENGKIEEFEAIIF 308 (381)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~--~--~v~~~~g~~~~~D~vi~ 308 (381)
.+....+.. ....+... ....-.+..+...+.+.+.+ .+++++.+ ++++.. + .+.+++|+++.+|.||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~ 156 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPA-LGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIA 156 (382)
T ss_pred EcCCCCceEEechhhcCCCc-cEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEE
Confidence 000000000 00000000 00001122333445555665 48888866 777753 3 35667888899999999
Q ss_pred ecCCCCC
Q 035902 309 ATGYKST 315 (381)
Q Consensus 309 a~G~~p~ 315 (381)
|.|....
T Consensus 157 AdG~~S~ 163 (382)
T TIGR01984 157 ADGANSK 163 (382)
T ss_pred ecCCChH
Confidence 9997653
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=63.19 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|+|+|..|+.+|..|++.|.+|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45889999999999999999999999999999864
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0025 Score=59.02 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=30.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||||++|+-+|..|++.|.+|+++.|++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999988
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.018 Score=55.24 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
++|+|||||..|+.+|..+.+.+. +|+++|..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 689999999999999988888875 799998765
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.013 Score=60.39 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=61.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-CC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-SV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
++|+|||||..|+-+|..+.+. |. +|+++.+...- ..+. ...++..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~------------------------------~Mpa--~~eEl~~ 714 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKR------------------------------YMPA--SREELEE 714 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcc------------------------------cccc--CHHHHHH
Confidence 6899999999999999998876 75 79999986510 0010 1123322
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-------ec-----CCCceEEEEeCEEEEccCCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-------NT-----ALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-------~~-----~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.. +.|+.++....+..+. + +...+... ++ ..++...+.+|.||+|+|..|...
T Consensus 715 ----al-eeGVe~~~~~~p~~I~--~--g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~ 779 (1012)
T TIGR03315 715 ----AL-EDGVDFKELLSPESFE--D--GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTD 779 (1012)
T ss_pred ----HH-HcCCEEEeCCceEEEE--C--CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChH
Confidence 22 3488887777666664 1 11111100 00 012345799999999999987643
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0027 Score=59.37 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=31.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
.+|+|||+|+.|.-+|..|++.|.+|+++.+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999999873
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=63.01 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|||.|++|+++|..|+++|.+|+++|++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999875
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=56.40 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=81.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
-+-+|||||+.++.||-.|.-.|+++++.-|+-.+.| | .+++.+.+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG-----------------------F-----------Dqdmae~v 244 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG-----------------------F-----------DQDMAELV 244 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc-----------------------c-----------cHHHHHHH
Confidence 3678999999999999999999999999988753221 1 24677777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
.+.++..|+.+...+....++..+ .+.+.|...+...++...-.||.|+.|.|-.+...++
T Consensus 245 ~~~m~~~Gikf~~~~vp~~Veq~~-~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l 305 (503)
T KOG4716|consen 245 AEHMEERGIKFLRKTVPERVEQID-DGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDL 305 (503)
T ss_pred HHHHHHhCCceeecccceeeeecc-CCcEEEEeecccccccccchhhhhhhhhccccchhhc
Confidence 788888899987777777776655 3556777666555555567899999999988665544
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0015 Score=63.03 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
..-+|||||.-|+.+|..|...|.+++++.-.+.+. .... ...-...|
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-------------------------------erQL-D~~ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-------------------------------ERQL-DRTAGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH-------------------------------HHhh-hhHHHHHH
Confidence 346899999999999999999999999997654211 0000 01122355
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+...++.|+.+++++..+.+.... ..-.+.+++| ..+.+|.||.|+|.+|+.
T Consensus 194 ~~~le~~Gi~~~l~~~t~ei~g~~--~~~~vr~~DG-----~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 194 RRKLEDLGIKVLLEKNTEEIVGED--KVEGVRFADG-----TEIPADLVVMAVGIRPND 245 (793)
T ss_pred HHHHHhhcceeecccchhhhhcCc--ceeeEeecCC-----CcccceeEEEeccccccc
Confidence 667777899988877666655432 3344788887 789999999999999875
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0021 Score=59.98 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||||+.|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 68999999999999999999999999999987
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0022 Score=59.94 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=70.8
Q ss_pred EEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-----------hhHHHHHHHHhhCcH--HHHHHHHHHH-hhhhh
Q 035902 173 LVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-----------EIVFAGMLLLKFLPC--KLVDFIVVML-SKMKF 238 (381)
Q Consensus 173 ~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-----------~~~~~~~~~~~~l~~--~~~~~~~~~~-~~~~~ 238 (381)
+|||+|++|+-+|..+++.|.+|.++.+.+. +-.. ........+..+.+. .+....+..+ .....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~-~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK-IGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc-ccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 5899999999999999999999999998772 2110 000001111111111 1111111110 01111
Q ss_pred cCccccCCCCCC--CCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCCcEeeccEEEEec
Q 035902 239 GNLFKYGLERPK--KGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENGKIEEFEAIIFAT 310 (381)
Q Consensus 239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g~~~~~D~vi~a~ 310 (381)
.-+...++.... .+..+. .......+...+.+.+++.+++++.+ ++++..+ . +.. +++++.+|.||+|+
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p--~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAt 156 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFP--CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILAT 156 (400)
T ss_pred HHHHHcCCeeEEecCCEeEC--CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECC
Confidence 111222322111 111000 01111233344566677778888877 7776542 2 333 56689999999999
Q ss_pred CCCC
Q 035902 311 GYKS 314 (381)
Q Consensus 311 G~~p 314 (381)
|...
T Consensus 157 G~~s 160 (400)
T TIGR00275 157 GGLS 160 (400)
T ss_pred CCcc
Confidence 9764
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0041 Score=59.60 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 479999999999999999999999999999987
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0016 Score=61.09 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHh-hCCCeeEEEEecCc
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLS-SCGACTSIVVRGPV 203 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~-~~g~~v~~i~r~~~ 203 (381)
.+++|+|||+|++|+.+|..|. +.|.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5789999999999999999765 67899999999883
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0026 Score=61.34 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||+|.+|.-.|..|.+...+|++.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 3789999999999999999999888998887764
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0032 Score=58.74 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 579999999999999999999999999999875
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0052 Score=59.14 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=29.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~ 202 (381)
++|+|||+|++|+-++..|.+.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 589999999999999999987654 799999865
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=60.85 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|+.|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 479999999999999999999999999999986
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0061 Score=48.73 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.8
Q ss_pred EEEcCCCCHHHHHHHHhhCC-----CeeEEEEecC
Q 035902 173 LVVGCGNSGMEIAYDLSSCG-----ACTSIVVRGP 202 (381)
Q Consensus 173 ~viG~G~~~~e~a~~l~~~g-----~~v~~i~r~~ 202 (381)
+|||+|++|+-++..|.+.. .+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999873 4799999865
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=56.01 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..-+|+|||+|+.|+-+|..|++.|.+|.++.+++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34589999999999999999999999999999886
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0041 Score=57.88 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|+.|.-+|..|++.|.+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 379999999999999999999999999999875
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0041 Score=58.12 Aligned_cols=32 Identities=41% Similarity=0.527 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++.|.+|.++.|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999876
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.067 Score=53.00 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=59.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC------CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCC-CH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV------PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFV-PR 76 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~------~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (381)
++|+|||||..|+-+|..|.+.+. +|+++...... ..++ ..
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~--------------------------------~~~~~~~ 466 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTF--------------------------------EEMPADM 466 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCc--------------------------------ccCCCCH
Confidence 689999999999999999988743 56666422100 0011 11
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEee--------c------CCCceEEEEeCEEEEccCCCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKN--------T------ALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~--------~------~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.++.+ +.+.|++++++..+..+..++ +.. .|.+.. + ..+....+.+|.||+|+|..|.
T Consensus 467 ~e~~~-----~~~~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 467 EEIEE-----GLEEGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred HHHHH-----HHHcCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 22222 224588888776666654322 211 122211 1 0123457999999999999976
Q ss_pred CC
Q 035902 142 IP 143 (381)
Q Consensus 142 ~~ 143 (381)
..
T Consensus 540 ~~ 541 (604)
T PRK13984 540 YS 541 (604)
T ss_pred hh
Confidence 44
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.00079 Score=63.47 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=26.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|||||+.|+-+|..+++.|.+|.++.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 48999999999999999999999999999988
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0018 Score=63.18 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.||++|||||.||+.+|..|.+ +.+|+|+|+..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 4899999999999999999998 68999999986
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0016 Score=63.12 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|++|||+|.+|..+|..|...|.+|+|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 5999999999999999999998899999999883
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0015 Score=63.53 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~ 36 (381)
|++|||||.||+.+|..|++.+ .+|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999975
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=54.54 Aligned_cols=93 Identities=23% Similarity=0.224 Sum_probs=66.0
Q ss_pred EEECCCHHHHHHH-HHHH----hCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 7 VIVGAGPAGLATS-ACLN----NLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 7 vIIGaG~aG~~~A-~~l~----~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+|++.|+.|+..+ ..+. +.|.+|++++..+ + ..+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~p----------------------------------p-slpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLP----------------------------------P-SVPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCC----------------------------------C-CCchHHHHH
Confidence 5678888888887 4343 3589999997654 1 112236778
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEE-EEeecCCCceEEEEeCEEEEccCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWII-VAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.+.+.+++.+++++.+++|.++...+ +.... ...++ +...+++|.||+|+|..
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g---~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNH---GDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCC---ceEEEECCEEEEeCCCc
Confidence 88888888899999999999998765 33222 22222 34579999999999986
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.01 Score=55.58 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 357999999999999999999999999999986
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0082 Score=56.73 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~ 202 (381)
...+++|||+|++|+-+|..|.+.|.. +.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 356899999999999999999999987 99999886
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0061 Score=56.47 Aligned_cols=32 Identities=34% Similarity=0.559 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 68999999999999999999999999999864
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0015 Score=62.75 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=71.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.-+++|||+|+.|+-+|..+++.|.+|.++.+...+..+.... ....+.+. +.+.+...|............+.
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW---~~~l~~lg--l~~~i~~~w~~~~v~~~~~~~~~- 181 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVW---EDEFKDLG--LEDCIEHVWRDTIVYLDDDKPIM- 181 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccc---hhHHHhcC--cHHHHHhhcCCcEEEecCCceee-
Confidence 3479999999999999999999999999998754221111000 00111111 01111111211111000000000
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeC--Ce---EEEcCCcEeeccEEEEecCCCC
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINR--NE---VEFENGKIEEFEAIIFATGYKS 314 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~p 314 (381)
.+..+- .-.+..+...+.+.+.+.+++++.. |+.+.. ++ +.+.+|.++.++.||.|+|...
T Consensus 182 --~~~~Yg---~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 182 --IGRAYG---RVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred --ccCccc---EEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000000 0011223344455556667888666 777753 33 3457788999999999999865
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=54.83 Aligned_cols=33 Identities=30% Similarity=0.606 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 479999999999999999999999999999987
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.006 Score=59.01 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+++|||+|+.|+++|..+++.|.+|.++.+..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 58999999999999999999999999999864
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0029 Score=59.61 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|+.|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 479999999999999999999999999999987
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0036 Score=58.46 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
-+|+|||+|++|.-+|..|++.|.+|.++.+++.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4689999999999999999999999999999874
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0066 Score=56.67 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
-+++|||+|.+|+-+|..|++. |.+|+++.|.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3699999999999999999998 99999999875
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0085 Score=55.83 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
-+|+|||+|++|+-+|..|++.|.+|++++|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999999883
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0055 Score=57.37 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 789999999999999999999999999999987
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0077 Score=56.65 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~ 202 (381)
+|+|||+|..|+-+|..|++.| .+|+++.|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6899999999999999999998 5999999987
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.015 Score=54.74 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|+.|+-+|..|++.|.+|++++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4679999999999999999999999999999987
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0027 Score=57.83 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++|++|||+|.-|+.||..|++.|.+|+++|+...+||
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 58999999999999999999999999999999976665
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.015 Score=56.79 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4679999999999999999999999999999987
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.067 Score=52.48 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=64.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC-HHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP-RISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (381)
++|+|||+|..|+.+|..+.+.+ .+++|+.+.+.. .++. ..++.
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~---------------------------------~~~~~~~~~~- 313 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRE---------------------------------DMPAHDEEIE- 313 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcc---------------------------------cCCCCHHHHH-
Confidence 67999999999999999888888 568888876410 0111 11222
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEE---Ee------ecC----CCceEEEEeCEEEEccCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIV---AK------NTA----LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~---~~------~~~----~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+.++++++++.+..+..++ ++...++ .. ++. .++...+.+|.||+|+|..|..
T Consensus 314 ----~a~~~GVki~~~~~~~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 382 (564)
T PRK12771 314 ----EALREGVEINWLRTPVEIEGDE-NGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS 382 (564)
T ss_pred ----HHHHcCCEEEecCCcEEEEcCC-CCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCch
Confidence 1334588988888888886543 1221121 11 110 2334689999999999988753
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=56.02 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=29.5
Q ss_pred eEEEEcCCCCHHHHHHHHhh----CCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSS----CGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~----~g~~v~~i~r~~ 202 (381)
+|+|||+|++|+-+|..|++ .|.+|+++.+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999998 799999999954
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.02 Score=53.07 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=28.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCC---eeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGA---CTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~---~v~~i~r~~ 202 (381)
.+|+|||+|.+|+.+|..|.+... .|+++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 579999999999999999998642 388998877
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.023 Score=50.21 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=71.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
-+||+|||||-+|+.+|+-|+-.-..|+++|-.+.+ ..+. .
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------------------------------------kAD~---V 394 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------------------------------------KADA---V 394 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh------------------------------------hhHH---H
Confidence 389999999999999999998765689998855421 1122 3
Q ss_pred HHHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 83 VDNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
++..+. ..++++..+...+.+.-+. ++.-.+...+...++...+.-+-|++-.|.-|+.-=++|
T Consensus 395 Lq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg 459 (520)
T COG3634 395 LQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKG 459 (520)
T ss_pred HHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhc
Confidence 333333 3478888887777776553 122225556666667778888889999998877543344
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.012 Score=54.82 Aligned_cols=31 Identities=35% Similarity=0.484 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
+|+|||+|++|+-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.038 Score=51.92 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..++++|||+|++|.-.|..|.+.|.+++++.|.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 46899999999999999999999999999999998
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0043 Score=41.68 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=27.2
Q ss_pred EEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 174 VVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 174 viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999998
|
... |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0016 Score=59.59 Aligned_cols=32 Identities=34% Similarity=0.641 Sum_probs=28.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++.|.+|+++.|++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 68999999999999999999999999999988
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.018 Score=56.22 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4679999999999999999999999999999887
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0051 Score=58.35 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=36.1
Q ss_pred cccchhhhhhcCCCeEEccC-cceEe--CC----eEEEcCCcEeeccEEEEecCCCCCc
Q 035902 265 TIDVGAMDKIRKGEIQVFPS-ITSIN--RN----EVEFENGKIEEFEAIIFATGYKSTV 316 (381)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~-v~~v~--~~----~v~~~~g~~~~~D~vi~a~G~~p~~ 316 (381)
.++.-+.+...+.+++++.+ |..+. ++ .|.+++|+++++|.+|=|+|++...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 33444566667789999988 66553 22 4677899999999999999996543
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0092 Score=50.53 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.6
Q ss_pred EEEEcCCCCHHHHHHHHhhCC--CeeEEEEecC
Q 035902 172 VLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGP 202 (381)
Q Consensus 172 v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~ 202 (381)
.+|||||..|+.+|..|+.+- .+|.+++.++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 579999999999999999874 4677777665
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=53.41 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|+.|+-+|..|++.|.+|+++.|++
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 579999999999999999999999999999997
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.019 Score=53.56 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=30.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC---CCeeEEEEec
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC---GACTSIVVRG 201 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~---g~~v~~i~r~ 201 (381)
-+|+|||+|+.|.-+|..|++. |.+|++++|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4699999999999999999998 9999999995
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.061 Score=51.38 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|..|+-+|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999999999999999999865
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0067 Score=58.08 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~ 38 (381)
+||.+|||||.||+..|..|.+. ..+|+|+|+....
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 49999999999999999999987 5799999987533
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0063 Score=44.80 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35789999999999999999999999999999883
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0089 Score=48.97 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||+|..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999875
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.011 Score=55.22 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=34.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
=+++||+|+|-|..-...|..|.+.|.+|+-+|+++..||.|..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 03699999999999999999999999999999999999997754
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0075 Score=48.26 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|||||..|.++|..|+++|.+|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998864
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.016 Score=48.53 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+.+++++|||||.+|..-+..|.+.|.+|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 568999999999999999999999999999997543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.038 Score=54.54 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||||..|+-+|..|++.|.+|+++.|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56789999999999999999999999999999976
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.023 Score=52.91 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3579999999999999999999999999999988
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.015 Score=54.36 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCC----CeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCG----ACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g----~~v~~i~r~~ 202 (381)
..+|+|||+|+.|.-+|..|++.| .+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 357999999999999999999986 4799999975
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.018 Score=53.97 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4579999999999999999999999999999986
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.016 Score=53.42 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.++++|||||.+|+++|..|++.|.+|+++.+.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 36889999999999999999999999999999988
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.014 Score=48.81 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=31.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|||||..|...+..|.+.|.+|+|++++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34789999999999999999999999999998764
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.027 Score=52.92 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 68999999999999999999999999999987
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.015 Score=56.77 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 34689999999999999999999999999999987
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.014 Score=46.55 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
.++|+|||||..|..-+..|.+.|.+|+||++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 478999999999999999999999999999654
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.021 Score=53.71 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=29.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.|+|||||+.|+|+|...++.|.++.+++-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 478999999999999999999999988877544
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.022 Score=52.84 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~ 202 (381)
-+++|||||.+|+-+|.+|++.. .+|.++.+.+
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 47899999999999999999998 7899999876
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.018 Score=50.22 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=28.5
Q ss_pred cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcc
Q 035902 285 ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 285 v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
|.+++++ .|.+.+|+++..|.+|+|+|..-++.
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~ 148 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYG 148 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccc
Confidence 6666664 78899999999999999999998874
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.082 Score=51.10 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.-+|+|||+|..|+-+|..+++.|.+|.++.+.+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3479999999999999999999999999999876
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.014 Score=49.71 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++++|||+|..|...|..|.+.|..|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 369999999999999999999999999999986
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.051 Score=50.21 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
--.|+|||||+.|+|+|...++.|++..+++.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 457999999999999999999999988777744
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.023 Score=44.18 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVP-NIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~ 36 (381)
.++++|||+|-+|..++..|...|.+ ++|+.|+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 47899999999999999999999986 99999874
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.011 Score=48.55 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||.|+.|+.+|..|++.|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 59999999999999999999999999999875
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.027 Score=57.21 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++++.|||+|+.|.-+|..|.+.|..|++..|++
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 68999999999999999999999999999999998
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.023 Score=47.46 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
+.++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3478999999999999999999999999999864
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.079 Score=46.83 Aligned_cols=34 Identities=29% Similarity=0.579 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...++|||+|..|+..|.+|+++|.++.++.+-+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 4578999999999999999999999999998766
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.015 Score=53.92 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++|+|||||..|+++|..|++.|.+|+++.+++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 689999999999999999999999999999776
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.07 Score=44.28 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=74.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
+-.+|||||-+.+.-|..|.+.+.+|.|+-|.+++ .-...+
T Consensus 158 k~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f---------------------------------------RAs~~M 198 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF---------------------------------------RASKIM 198 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh---------------------------------------hHHHHH
Confidence 56899999999999999999999999999887632 112333
Q ss_pred HHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 84 DNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 84 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
++.+.+ .++++++++.+.+..-+. ...-.+.+.+...++...+..+-|+.|.|-.|...-+.|
T Consensus 199 q~ra~~npnI~v~~nt~~~ea~gd~-~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g 262 (322)
T KOG0404|consen 199 QQRAEKNPNIEVLYNTVAVEALGDG-KLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG 262 (322)
T ss_pred HHHHhcCCCeEEEechhhhhhccCc-ccccceEEEecccCcccccccceeEEEecCCchhhHhcC
Confidence 444444 477888888776654332 111226666666667788999999999999987655555
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.026 Score=50.26 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=32.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.-.+|.|||+|..|...|..+++.|.+|+++|++.
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 34789999999999999999999999999999875
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.029 Score=49.87 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|.-.+|.|||+|..|...|..+++.|.+|+++|.+.
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 433679999999999999999999999999999875
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.023 Score=53.61 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+++|+|||+|+.|..+|..|++.|.+|+++.|.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3457999999999999999999999999999998877
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.025 Score=50.17 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999875
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.091 Score=45.05 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|..|+-+|..|.+.|.+|+++.++.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 368999999999999999999999999999876
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.025 Score=53.05 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=33.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|..++|.|||.|..|+..|..|+++|++|+.+|.++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 666789999999999999999999999999999875
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.015 Score=46.07 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred EEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCC
Q 035902 172 VLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKK 251 (381)
Q Consensus 172 v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (381)
|+|+|+|.+|.-+|..|++.|.+|+++.|++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~------------------------------------------------ 32 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPR------------------------------------------------ 32 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHH------------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcccc------------------------------------------------
Q ss_pred CCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCCeEEEcCC--cEeeccEEEEec
Q 035902 252 GPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRNEVEFENG--KIEEFEAIIFAT 310 (381)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~~v~~~~g--~~~~~D~vi~a~ 310 (381)
.+.+++.++.+... -+............ ..-++|.||+|+
T Consensus 33 -------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 33 -------------------LEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp -------------------HHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred -------------------HHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.041 Score=55.92 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
+|+|||+|+.|+-+|..|++. |.+|+++.+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 689999999999999999998 78999999987
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.065 Score=48.09 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecCc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGPV 203 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~~ 203 (381)
..+++|||+|+.|+-.|..|.+. +.+|+++.+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV 56 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc
Confidence 44999999999999999998884 478999999884
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.055 Score=45.59 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
.+++++|||||..|..=+..|.+.|.+|+++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa------------------------------------------------ 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS------------------------------------------------ 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc------------------------------------------------
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecC
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATG 311 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G 311 (381)
|.+..++.+....++++++.. .++.+....++.||.||+
T Consensus 56 ----------------p~i~~el~~l~~~~~i~~~~r---------~~~~~dl~g~~LViaATd 94 (223)
T PRK05562 56 ----------------KKFSKEFLDLKKYGNLKLIKG---------NYDKEFIKDKHLIVIATD 94 (223)
T ss_pred ----------------CCCCHHHHHHHhCCCEEEEeC---------CCChHHhCCCcEEEECCC
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.023 Score=41.80 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
+..+++++|||||..|..-+..|.+.|.+|+++.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 346899999999999999999999999999999865
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.022 Score=53.01 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|..|+++|..|++.|.+|+++.+++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 68999999999999999999999999999877
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.052 Score=50.40 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 74 VPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.....+...+...+.+ |++++.++.|.+++.++ +.|.|.+.++ ..+++|.||+|+|.+
T Consensus 132 idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~g-----~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDANG-----EVIAASVVVLANGAQ 189 (381)
T ss_pred cChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCCC-----CEEEcCEEEEcCCcc
Confidence 3445666667677777 89999999999998765 5677877765 458999999999988
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 381 | ||||
| 4a9w_A | 357 | Flavin-Containing Monooxygenase From Stenotrophomon | 2e-14 | ||
| 3gwd_A | 540 | Closed Crystal Structure Of Cyclohexanone Monooxyge | 2e-09 | ||
| 3ucl_A | 573 | Cyclohexanone-Bound Crystal Structure Of Cyclohexan | 3e-09 | ||
| 3uov_A | 545 | Crystal Structure Of Otemo (Fad Bound Form 1) Lengt | 9e-09 | ||
| 2ylw_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 1e-08 | ||
| 1w4x_A | 542 | Phenylacetone Monooxygenase, A Baeyer-villiger Mono | 1e-08 | ||
| 2ylx_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 1e-08 | ||
| 2ylz_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 1e-08 | ||
| 4ap1_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 3e-07 | ||
| 4aos_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 3e-07 | ||
| 4ap3_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 3e-07 | ||
| 2xvi_A | 464 | Crystal Structure Of The Mutant Bacterial Flavin Co | 2e-06 | ||
| 2xlr_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 3e-06 | ||
| 2xls_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 3e-06 | ||
| 2vq7_A | 461 | Bacterial Flavin-Containing Monooxygenase In Comple | 3e-06 | ||
| 2xlp_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 3e-06 | ||
| 2xve_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 5e-06 | ||
| 2xvf_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 6e-06 |
| >pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357 | Back alignment and structure |
|
| >pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540 | Back alignment and structure |
|
| >pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573 | Back alignment and structure |
|
| >pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545 | Back alignment and structure |
|
| >pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542 | Back alignment and structure |
|
| >pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542 | Back alignment and structure |
|
| >pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542 | Back alignment and structure |
|
| >pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542 | Back alignment and structure |
|
| >pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464 | Back alignment and structure |
|
| >pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461 | Back alignment and structure |
|
| >pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 381 | |||
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 1e-118 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 4e-42 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 7e-41 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 3e-27 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 6e-26 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 2e-13 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 2e-13 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 2e-13 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 2e-13 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 6e-13 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 4e-10 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 5e-09 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 3e-08 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 1e-07 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 1e-07 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 2e-07 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 4e-07 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 5e-07 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 8e-07 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 2e-06 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 5e-06 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 6e-06 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 6e-06 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 7e-06 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 7e-06 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 2e-05 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 3e-05 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 4e-05 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 1e-04 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 2e-04 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 2e-04 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 3e-04 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 4e-04 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 6e-04 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 6e-04 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 7e-04 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 9e-04 |
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 346 bits (890), Expect = e-118
Identities = 82/389 (21%), Positives = 147/389 (37%), Gaps = 43/389 (11%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
M+ V VV++G G +GL+ L + +IL+ E W+ + + L +
Sbjct: 1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA-WHSLHLFSPAGWSS 59
Query: 61 LPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTA 120
+P P P+ + R + Y+ Y + + V+ S+ +VA++
Sbjct: 60 IPGWPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGER--LRVVARDG- 116
Query: 121 LDAYEEYVARYLVVATGENG--LIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCG 178
+++AR ++ ATG G PE GL SF G +HS+ Y F G V ++G G
Sbjct: 117 ----RQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGG 172
Query: 179 NSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238
NSG +I ++S+ T I P + VD V+ +
Sbjct: 173 NSGAQILAEVSTVAETTWITQHEPAFLADD-----------------VDGRVLFERATER 215
Query: 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENG 298
+ G P P F I P +D +G + P + +++ +G
Sbjct: 216 WKAQQEGR-EPDLPPGGFGDIVMVPPVLDA-----RARGVLAAVPPPARFSPTGMQWADG 269
Query: 299 KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNC-PNHWKGENGLYCAG----- 352
F+A+I+ TG++ + + LK D G + + ++ G
Sbjct: 270 TERAFDAVIWCTGFRPAL-SHLK--GLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWN 326
Query: 353 -FSRTGLHGISIDAKNIANDINLALTDHQ 380
+ L G++ A+ + DHQ
Sbjct: 327 GMASATLIGVTRYAREAVRQVTAYCADHQ 355
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 4e-42
Identities = 56/393 (14%), Positives = 117/393 (29%), Gaps = 81/393 (20%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCE 60
M+ V I+GAG AG+ + L + + ++I+ + +K +
Sbjct: 2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHW-PKSTRTITPSFTSN 60
Query: 61 LPHM-----------PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENA 109
M P + + ++ Y+ + +N + V + S D+
Sbjct: 61 GFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAY 120
Query: 110 KAWIIVAKNTALDAYEEYVARYLVVATGENGL--IPEVPGLGSFEGEYMHSSKYENGGKF 167
+ I E Y A Y+ VATG+ P G +H S+ E+ F
Sbjct: 121 --YTIATTT------ETYHADYIFVATGDYNFPKKPFKYG--------IHYSEIEDFDNF 164
Query: 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227
+V+G SG + AY L+ G+ ++
Sbjct: 165 NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDAD----------------- 207
Query: 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITS 287
L Y +R + Q I++ ++ +
Sbjct: 208 ---------PSVRLSPYTRQR-------LGNVIKQGARIEMNVHYTVKDIDFNNG----- 246
Query: 288 INRNEVEFENGKIEEFE-AIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGEN 346
+ + F++G+ I ATG+ +T + + ++ K +
Sbjct: 247 --QYHISFDSGQSVHTPHEPILATGFDATKN-PIVQQLFVTTNQD--IKLTTHDESTRYP 301
Query: 347 GLYCAGFSRTGLHGISI-------DAKNIANDI 372
++ G + + +A+ +
Sbjct: 302 NIFMIGATVENDNAKLCYIYKFRARFAVLAHLL 334
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 7e-41
Identities = 64/431 (14%), Positives = 131/431 (30%), Gaps = 84/431 (19%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPN-----IILEREDCSASLWKKR---AYDRMKLHLAKQ 57
++ VG GP+ +A + L + + L+++ W + +++ K
Sbjct: 33 LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKD 90
Query: 58 FCEL-----------------PHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSV 100
L + F + + R+ F +Y+ S RY V
Sbjct: 91 LVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEV 150
Query: 101 ESASYDENAKAW--IIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158
+A + V A R LVV+ G IP+V +G H
Sbjct: 151 LRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHH 210
Query: 159 SKYEN------GGKFIGKNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGPVHVLTREI 210
S+Y + ++G G S E DL+ +++R +
Sbjct: 211 SQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDS 270
Query: 211 VFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGA 270
F + F P Y E ++ + +D
Sbjct: 271 PFVNEV---FAPKFTDLI---------------YSREHAERERLLREYHNTNYSVVDTDL 312
Query: 271 MDKIRK--------GEIQVF----PSITSI----NRNEVEFEN-----GKIEEFEAIIFA 309
+++I G + ++ E+ + +E ++A+I A
Sbjct: 313 IERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILA 372
Query: 310 TGYKSTVRNWLKRADKDFFDEYGMPKRNCPN-HWKGENGLYCA-------GFSRTGLHGI 361
TGY+ + L ++ ++ + + + + +Y G S T L +
Sbjct: 373 TGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTLLSVL 432
Query: 362 SIDAKNIANDI 372
+ A+ I+ +
Sbjct: 433 PVRAEEISGSL 443
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 3e-27
Identities = 48/265 (18%), Positives = 87/265 (32%), Gaps = 44/265 (16%)
Query: 6 VVIVGAGPAGLATS-ACLNNLSVPNIIL-EREDCSASLWK-------------------- 43
+ I+GAGP+GL T+ A L + + L ER +W
Sbjct: 9 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 68
Query: 44 -------------KRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQM 90
Y ++ + + F +T F R + Y Y +
Sbjct: 69 EPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL 128
Query: 91 GINPRYHRSVESASYDENAKAWIIVAKNTALDA-YEEYVARYLVVATG--ENGLIPEVPG 147
+ V + + W++ K T + + + + + G E IP + G
Sbjct: 129 LPFIKLATDVLDIEKKDGS--WVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKG 186
Query: 148 LGSFE----GEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPV 203
L + G +HSS + F+G++VLVVG +S ++ L+
Sbjct: 187 LDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG 246
Query: 204 HVLTREIVFAGMLLLKFLPCKLVDF 228
+ E + + KF P +
Sbjct: 247 GDIQNESLQQVPEITKFDPTTREIY 271
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 29/232 (12%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPN------IILEREDCSASLWK---------------K 44
+ I+GAGP+G+A + + E++ W
Sbjct: 5 IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHS 64
Query: 45 RAYDRMKLHLAKQFCELPHMPFPSR----TPTFVPRISFINYVDNYVSQMGINP--RYHR 98
Y + + K+ E F ++ PR +Y+ V + G+ R++
Sbjct: 65 SMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNT 124
Query: 99 SVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL--IPEVPGLGSFEGEYM 156
+V ++E+++ + + ++ D Y+V TG +PE G F G +
Sbjct: 125 AVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRIL 184
Query: 157 HSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR 208
H+ + + +F K VL+VG S +I GA I + +
Sbjct: 185 HAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK 236
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 95 RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL----IPEVPGLGS 150
R+ V SA DE W + D +E AR+LVVA G L P GL
Sbjct: 119 RFDTRVTSAVLDEEGLRWTV-----RTDRGDEVSARFLVVAAG--PLSNANTPAFDGLDR 171
Query: 151 FEGEYMHSSKY-ENGGKFIGKNVLVVGCGNSGM----EIA 185
F G+ +H++++ +G F GK V V+G G+SG+ IA
Sbjct: 172 FTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIA 211
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 95 RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL----IPEVPGLGS 150
+H +V +A++DE W + + + ARYL++A+G L +P PGL
Sbjct: 114 TFHTTVTAAAFDEATNTWTV-----DTNHGDRIRARYLIMASG--QLSVPQLPNFPGLKD 166
Query: 151 FEGEYMHSSKY-ENGGKFIGKNVLVVGCGNSGM----EIA 185
F G H+ + F G+ V V+G G+SG+ +IA
Sbjct: 167 FAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIA 206
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 51/337 (15%), Positives = 99/337 (29%), Gaps = 80/337 (23%)
Query: 6 VVIVGAGPAGL--ATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPH 63
+ +VGAGPAGL A +A V + + + QF
Sbjct: 376 LAVVGAGPAGLAFAINAAARGHQV--TLFDAHS----------------EIGGQFNIAKQ 417
Query: 64 MPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDA 123
+P + F + Y + + + N + A
Sbjct: 418 IPG---------KEEFYETLRYYRRMI------------------EVTGVTLKLNHTVTA 450
Query: 124 YEEYVARY--LVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSG 181
+ + + ++A+G P + G+ + + +G V ++GCG G
Sbjct: 451 --DQLQAFDETILASGIVPRTPPIDGID--HPKVLSYLDVLRDKAPVGNKVAIIGCGGIG 506
Query: 182 MEIAYDLSSCGACTSIVVRGPVHV--LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239
+ A LS G TS + G + + + AG L + + +VML +
Sbjct: 507 FDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA-- 564
Query: 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFE- 296
K G T + +++ P I+ + +
Sbjct: 565 ----------------SKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVI 608
Query: 297 NGKIEEFEA--IIFATGYKSTVRNWLKRADKDFFDEY 331
NG+ + ++ G + L + D
Sbjct: 609 NGETQVLAVDNVVICAGQEP--NRALAQPLIDSGKTV 643
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 95 RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG--ENGLIPEVPGLGSFE 152
++ V SA Y ++ W + D E Y A+Y+V A G P +PGL +FE
Sbjct: 107 KFGTEVTSALYLDDENLWEV-----TTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFE 161
Query: 153 GEYMHSSKYENGGKFIGKNVLVVGCGNSGM----EIA 185
GE +H++ + G G+ V V+G G++G +A
Sbjct: 162 GETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLA 198
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 22/106 (20%)
Query: 95 RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL----IPEVPGLGS 150
R++ V +A Y EN + W + LD E R+L+ ATG L +P++ G+ S
Sbjct: 107 RFNTRVTAARYVENDRLWEV-----TLDNEEVVTCRFLISATG--PLSASRMPDIKGIDS 159
Query: 151 FEGEYMHSS-------KYENGGKFIGKNVLVVGCGNSGM----EIA 185
F+GE HSS G F GK V V+G G +G+ A
Sbjct: 160 FKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAA 205
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 4e-10
Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 49/215 (22%)
Query: 1 MEEVPVVIVGAGPAGL--ATSACLNNLSVPNIILERED-----CSASLWKKRAYDRMKLH 53
+ V+IVGAGP GL + LS ++ +A +K YD
Sbjct: 3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSF--RFVDPLPEPGGQLTALYPEKYIYD----- 55
Query: 54 LAKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMG-INPRYH--RSVESASYDENAK 110
P++ + V V Q+ NP Y E+ + +
Sbjct: 56 ------------VAG-----FPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDL- 97
Query: 111 AWIIVAKNTALDAYEEYVARYLVVATGENGLIP---EVPGLGSFEGEYMHSSKY--ENGG 165
+ + Y A+ +++A G P PG FEG ++ Y ++
Sbjct: 98 -FKVTT-----SQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVY---YAVKSKA 148
Query: 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
+F GK VL+VG G+S ++ A +L +++ R
Sbjct: 149 EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHR 183
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 5e-09
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 49/210 (23%)
Query: 6 VVIVGAGPAGLATS--ACLNNLSVPNIILERED-----CSASLWKKRAYDRMKLHLAKQF 58
+ I+G GP GL T+ + SV I+E SA +K YD
Sbjct: 10 ITIIGGGPVGLFTAFYGGMRQASV--KIIESLPQLGGQLSALYPEKYIYD---------- 57
Query: 59 CELPHMPFPSRTPTFVPRISFINYVDNYVSQMG-INPRYH--RSVESASYDENAKAWIIV 115
P+I ++N QM + ++VES + + +V
Sbjct: 58 -------VAG-----FPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGV-FKLV 104
Query: 116 AKNTALDAYEEYVARYLVVATGENGLIP---EVPGLGSFEGEYMHSSKY--ENGGKFIGK 170
E + ++ +++ G P E+ +EG+ +H Y ++ KF G+
Sbjct: 105 TNE------ETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLH---YFVDDLQKFAGR 155
Query: 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
V ++G G+S ++ A L SI+ R
Sbjct: 156 RVAILGGGDSAVDWALMLEPIAKEVSIIHR 185
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 35/212 (16%), Positives = 55/212 (25%), Gaps = 83/212 (39%)
Query: 6 VVIVGAGPAGLATSACLN----NLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCEL 61
V+I+G AGL SA L ++ ++++
Sbjct: 5 VIIIGGSYAGL--SAALQLGRARKNI--LLVDA--------------------------- 33
Query: 62 PHMPFPSRTPTFVPRISFINYVDNYVSQMGINP------------RY------HRSVESA 103
R F ++ ++ Q G P RY V A
Sbjct: 34 -----------GERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDA 82
Query: 104 SYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGE------YMH 157
+D A L++A G +PE+ GL G Y H
Sbjct: 83 KGSFGEFI-------VEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCH 135
Query: 158 SSKYENGGKFIGKNVLVVGCGNSGMEIAYDLS 189
YE + V+ + A L
Sbjct: 136 G--YE----LDQGKIGVIAASPMAIHHALMLP 161
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 40/215 (18%), Positives = 81/215 (37%), Gaps = 47/215 (21%)
Query: 1 MEEVPVVIVGAGPAGLATS--ACLNNLSVPNIILERED-----CSASLWKKRAYDRMKLH 53
+ + I+G GP G+ + +NN+S I+E +A +K YD
Sbjct: 12 HDMRDLTIIGGGPTGIFAAFQCGMNNISC--RIIESMPQLGGQLAALYPEKHIYD----- 64
Query: 54 LAKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQM-GINPRYH--RSVESASYDENAK 110
P + I+ V++ +Q NP +V + ++
Sbjct: 65 ------------VAG-----FPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDD-G 106
Query: 111 AWIIVAKNTALDAYEEYVARYLVVATGENGL-----IPEVPGLGSFEGEYMHSSKYENGG 165
+ + Y +R +++A G G +P++ + G ++ + ++
Sbjct: 107 TFETRT-----NTGNVYRSRAVLIAAG-LGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVE 159
Query: 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
F GK V++VG G+S ++ L A ++V R
Sbjct: 160 DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHR 194
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 32/190 (16%), Positives = 51/190 (26%), Gaps = 38/190 (20%)
Query: 1 MEEVPVVIVGAGPAGLATSACL--NNLSVPNIILERED-----CSASL------------ 41
M V I+G GPAG L V I ER SL
Sbjct: 21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDV--TIYERSAFPRYRVGESLLPGTMSILNRLG 78
Query: 42 ----------WKKR----AYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVDNYV 87
KK + + + F P+ V R F + +
Sbjct: 79 LQEKIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEA 138
Query: 88 SQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147
GI V + + + V + + +++ A G G I G
Sbjct: 139 RSRGITVHEETPVTDVDLSDPDRVVLTVRRG---GESVTVESDFVIDAGGSGGPISRKLG 195
Query: 148 LGSFEGEYMH 157
+ ++ Y +
Sbjct: 196 VRQYDEFYRN 205
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 57/214 (26%)
Query: 6 VVIVGAGPAGL--ATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPH 63
V+IVGAGP+G A + +V + + + + ++
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTV--HLTDTAE----------------KIGGHLNQVAA 433
Query: 64 MPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDA 123
+P + + D +Q+ + ++ + + + A
Sbjct: 434 LPG---------LGEWSYHRDYRETQITKLLKKNKESQ------------LALGQKPMTA 472
Query: 124 YEEYVARY----LVVATG--------ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKN 171
+ V +Y +++ATG +PG + + + + +G K IGK
Sbjct: 473 --DDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKR 530
Query: 172 VLVVGCGNS--GMEIAYDLSSCGACTSIVVRGPV 203
V+++ +A L++ G +IV +
Sbjct: 531 VVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 564
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 44/218 (20%)
Query: 2 EEVPVVIVGAGPAGLATSACL--NNLSVPNIILERED-----CSASLWKKRAYDRM-KLH 53
E+V V+++GAGPAG ++ + + V I+E++ SL R + + +
Sbjct: 4 EKVDVLVIGAGPAGTVAASLVNKSGFKV--KIVEKQKFPRFVIGESLL-PRCMEHLDEAG 60
Query: 54 LAKQFCELPHMP----------------FPSRTPTF------VPRISFINYVDNYVSQMG 91
F + VPR +F + + ++ G
Sbjct: 61 FLDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQG 120
Query: 92 INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSF 151
++ Y V + I N E AR+++ A+G +IP + GL
Sbjct: 121 VDVEYEVGVTDIKFFGTDSVTTIEDINGNK---REIEARFIIDASGYGRVIPRMFGLDKP 177
Query: 152 EGE--------YMHSSKYENGGKFIGKNVLVVGCGNSG 181
G ++ K + G + V
Sbjct: 178 SGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKV 215
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 42/194 (21%)
Query: 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK-----KRA---YDRM--- 50
EV V++VGAG GL+T+ L V +++ER + + R
Sbjct: 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVA 63
Query: 51 ------------KLHLAKQFCELPHMPFPSRTPTFVPRISFINYVDNY-----VSQ---- 89
+ + E + +SQ
Sbjct: 64 DEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLE 123
Query: 90 ---------MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140
G R+ + S ++ + A+ D + A YLV A G
Sbjct: 124 PILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS 183
Query: 141 LIPEVPGLGSFEGE 154
L+ E G+G G
Sbjct: 184 LVRESLGIG-RYGH 196
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 77/228 (33%)
Query: 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMK-LHLAKQFC 59
M+ + ++GAGPAGL +ASL RA R +
Sbjct: 4 MKYIDCAVIGAGPAGL---------------------NASLVLGRA--RKQIALFDNNT- 39
Query: 60 ELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINP------------RY------HRSVE 101
R ++++ GI P +Y ++V
Sbjct: 40 ---------------NRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVV 84
Query: 102 SASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGE------Y 155
+ I+ + +Y+A +++ATG P +P + + G+ Y
Sbjct: 85 MITKQSTGLFEIVTKDH------TKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPY 138
Query: 156 MHSSKYENGGKFIGKNVLVVGCGNSG-MEIAYDLSSCGACTSIVVRGP 202
+E + ++++ + + + + I G
Sbjct: 139 CDG--WE----LKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN 180
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36
E V+I+G GP G+A + L + V ++++E+ D
Sbjct: 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTD 59
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36
+ V++VGAGPAG+ + L V ++LER
Sbjct: 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLV 44
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRA 46
+ V I+GAGP+GL L+ + N+ILER+ L + RA
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRA 45
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 6e-06
Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 40/193 (20%)
Query: 1 MEEVP----VVIVGAGPAGLATSACL--NNLSVPNIILERED-----CSASL-------- 41
M P ++++G GP G ++ + V ++LERE SL
Sbjct: 1 MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRV--LLLEREAFPRHQIGESLLPATVHGI 58
Query: 42 --------------WKKRAYDRMKLHLAKQFCELPHMPFPSRTPTF---VPRISFINYVD 84
+ + + + P F V R F + +
Sbjct: 59 CAMLGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLL 118
Query: 85 NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144
+ G++ R V ++ + AR++V A+G + +
Sbjct: 119 RNSERKGVDVRERHEVIDVLFEGERAVGVRYR--NTEGVELMAHARFIVDASGNRTRVSQ 176
Query: 145 VPGLGSFEGEYMH 157
G + + +
Sbjct: 177 AVGERVYSRFFQN 189
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36
VV+VG GP GL + L V ++LE+
Sbjct: 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLV 82
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 7e-06
Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 51/199 (25%)
Query: 2 EEVPVVIVGAGPAGLATSACLNNLS-VPNIILERED--CSASLWKKRA----------YD 48
+V V+IVG GPAGL +A L + I+E+++ +A ++
Sbjct: 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELG----QADGIACRTMEMFE 86
Query: 49 RMKLH--LAKQFCELPHMPF-------------PSRTPTFVPRISFINYV---------- 83
+ + K+ C + + F R +S +V
Sbjct: 87 AFEFADSILKEACWINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDH 146
Query: 84 ---DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAY-----EEYVARYLVVA 135
S + P Y R V D A + + DA E ARY+V
Sbjct: 147 YLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGC 206
Query: 136 TGENGLIPEVPGLGSFEGE 154
G + G G+
Sbjct: 207 DGARSNVRRAIGRQ-LVGD 224
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 60/211 (28%)
Query: 6 VVIVGAGPAGL--ATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPH 63
V++VGAGP+GL A + + V ++ E L + +
Sbjct: 394 VLVVGAGPSGLEAARALGVRGYDV--VLAEAGR----------------DLGGRVTQESA 435
Query: 64 MPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDA 123
+P ++ + + + + + + + +
Sbjct: 436 LPG---------LSAWGRVKEYREAVL-----------------AELPNVEIYRESPMTG 469
Query: 124 YEEYVARY----LVVATGENGLIPEVPGLGSFEGEYMHSSK---YE---NGGKFIGKNVL 173
+ + + ++ ATG V + + + G GK V+
Sbjct: 470 --DDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVV 527
Query: 174 VVGCGNS--GMEIAYDLSSCGACTSIVVRGP 202
V + G +A L+ G SIV G
Sbjct: 528 VYDDDHYYLGGVVAELLAQKGYEVSIVTPGA 558
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36
+ V++VGAGPAGL + L V ++LE+
Sbjct: 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLP 45
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 2 EEVPVVIVGAGPAGLATSACLNNLS-----VPNIILERED 36
V+IVGAGPAGL + L+ + I+++
Sbjct: 7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 46
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 62/237 (26%)
Query: 79 FINYVDNYVSQMGINPRYHRSVESASYD-ENAKAWIIVAKNTALDAYEEYVARYLVVATG 137
I Y+ I+ Y + + D A V T E A ++++ATG
Sbjct: 84 LIASRTAYID--RIHTSYENVLGKNNVDVIKGFA-RFVDAKTLEVNGETITADHILIATG 140
Query: 138 ENGLIPEVPGLGSFEGEYMHSSKYENGG---KFIGKNVLVVGCGNSGMEIAYDLSSCGAC 194
P++PG EY S +G + + V VVG G G+E+ ++ GA
Sbjct: 141 GRPSHPDIPG-----VEYGIDS---DGFFALPALPERVAVVGAGYIGVELGGVINGLGAK 192
Query: 195 TSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPF 254
T + L F P + + +V +++ +GP
Sbjct: 193 THLFEMFD------------APLPSFDPM-ISETLVEVMN---------------AEGP- 223
Query: 255 YFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATG 311
+ T P A+ K G + +E E+G+ E + +I+A G
Sbjct: 224 --QLHTNAIPK----AVVKNTDGSLT------------LELEDGRSETVDCLIWAIG 262
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEI 184
A L++ T ++ +P + GL G Y+ + GG+ V G +
Sbjct: 95 GVEKAERLLLCTHKDPTLPSLLGLTR-RGAYIDTD---EGGRTSYPRVYAAGVARGKVPG 150
Query: 185 AYDLSS-CGACTSIVVR 200
+S+ GA ++ +
Sbjct: 151 HAIISAGDGAYVAVHLV 167
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 19/108 (17%)
Query: 119 TALDAYEEYVARY--LVVATGENGLIPEVPGLGSFEGEYMHSSKYENG--------GKFI 168
TAL + +V Y L+ ATG ++P + G EG + EN +
Sbjct: 126 TALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADV 185
Query: 169 --------GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR 208
K V VVG G G+E+A G ++ L
Sbjct: 186 IAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVD-TCLAG 232
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 108 NAKAWIIVAKNTALDAYEEYVARY--LVVATGENGLIPEVPGLGSFEGEY-MHSSKYENG 164
N + I KN + E Y Y L+++ G ++P +PG+ + + + + +
Sbjct: 120 NKEEKTITIKN--VTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRN--VPDT 175
Query: 165 GKFI-------GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVL 206
+ ++ V+G G G+E+ +L G ++V V+
Sbjct: 176 DRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMAN-QVM 223
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 24/77 (31%)
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGK------------FIGKNV 172
+ Y A+Y+++ TG V G E EY GK F GK V
Sbjct: 111 DTYHAKYVIITTGTTHKHLGVKG----ESEYF--------GKGTSYCSTCDGYLFKGKRV 158
Query: 173 LVVGCGNSGMEIAYDLS 189
+ +G GNSG A +S
Sbjct: 159 VTIGGGNSGAIAAISMS 175
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 6e-04
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL--V 226
G NV V+G G GM +A ++ GA + R + + + +L V
Sbjct: 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV 214
Query: 227 DFIVV----------MLSKMKFG 239
D + +L++M
Sbjct: 215 DVCINTIPALVVTANVLAEMPSH 237
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 32/98 (32%)
Query: 121 LDAYEEYVARYLVVATGEN----GLIPEVPGLGSFEGEYMHSSKYENGGK---------- 166
+ AR +++ATG VPG E +Y K
Sbjct: 307 TASGAVLKARSIIIATGAKWRNMN----VPG----EDQYR--------TKGVTYCPHCDG 350
Query: 167 --FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202
F GK V V+G GNSG+E A DL+ +++ P
Sbjct: 351 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 388
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 9e-04
Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 52/220 (23%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPN---IILERED------CSASLWKKRAYDRMKLHLAK 56
V++VG AG P+ E D C + L+L K
Sbjct: 3 VIVVGCTHAGTFAVKQTIADH-PDADVTAYEMNDNISFLSCG-----------IALYLGK 50
Query: 57 QFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVA 116
+ +P + S +G N + V + D K I
Sbjct: 51 EIKNNDPRGLFYSSPEEL-------------SNLGANVQMRHQVTNV--DPETK--TIKV 93
Query: 117 KNTALDAYEEYVARY--LVVATGENGLIPEVPGLGSFEGEYMHSSK-YENGGKFI----- 168
K+ L EE Y L++ TG +P +PG+ + ++ K Y + K
Sbjct: 94 KD--LITNEEKTEAYDKLIMTTGSKPTVPPIPGI---DSSRVYLCKNYNDAKKLFEEAPK 148
Query: 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR 208
K + ++G G G E+A S+ +++ VL +
Sbjct: 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHE-RVLYK 187
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 381 | |||
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 100.0 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 100.0 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 100.0 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.98 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.98 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.97 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.97 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.97 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.97 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.97 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.97 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.96 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.96 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.96 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.96 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.96 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.96 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.95 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.95 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.93 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.73 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.71 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.7 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.61 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.57 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.45 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.43 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.43 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 99.41 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.4 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.32 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.32 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.31 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.28 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 99.28 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 99.27 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.27 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 99.26 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 99.26 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 99.25 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 99.25 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 99.25 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 99.24 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 99.24 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 99.22 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 99.22 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.21 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 99.21 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 99.2 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 99.19 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 99.19 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.19 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 99.18 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 99.18 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 99.17 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 99.17 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 99.16 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 99.14 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 99.14 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 99.13 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 99.12 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.1 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 99.09 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 99.06 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 99.05 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.05 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.05 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 99.05 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 99.04 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 99.03 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 99.01 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 99.01 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 99.0 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.99 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 98.99 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.98 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.97 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.96 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.93 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.9 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.9 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.9 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.89 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.89 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.89 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.87 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.87 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.87 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.85 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.85 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.84 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.84 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.83 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.82 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.82 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.82 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.8 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.8 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.8 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.79 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.77 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.77 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.76 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.76 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.74 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.73 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.73 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.72 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.71 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.71 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.71 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.71 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.7 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.7 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.69 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.69 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.68 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 98.68 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.68 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.68 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.68 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.67 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.67 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.67 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.66 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 98.66 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.66 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.66 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.66 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.65 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.65 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.64 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.64 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.64 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.64 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.63 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.63 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.63 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.62 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.62 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.61 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.61 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.59 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 98.57 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.57 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 98.56 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.56 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 98.54 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.52 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.5 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.49 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.48 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.45 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.42 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.42 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.41 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.4 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.4 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.39 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.38 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.38 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.37 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.35 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.35 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.35 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.34 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.34 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 98.34 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.33 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 98.32 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 98.32 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.31 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.31 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 98.31 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 98.29 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.28 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 98.26 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.26 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.26 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.26 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.25 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.24 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.24 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 98.22 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 98.21 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.2 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.18 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 98.18 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 98.18 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.16 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.15 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 98.15 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 98.14 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 98.14 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 98.09 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.08 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 98.04 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 98.03 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 98.02 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 98.02 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.98 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.94 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.92 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 97.91 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.88 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 97.85 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.82 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.81 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.78 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 97.77 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.76 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 97.75 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.75 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.75 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.74 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.74 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.72 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.68 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.67 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.67 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 97.65 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.64 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 97.61 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 97.6 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 97.52 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 97.51 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.5 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.45 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 97.43 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 97.38 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.38 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.34 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 97.32 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.32 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 97.3 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 97.3 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.26 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 97.25 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 97.23 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.21 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 97.21 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 97.2 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 97.19 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 97.13 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 97.11 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.08 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 97.07 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.05 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 97.03 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.03 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.01 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 96.99 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 96.98 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.94 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 96.92 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 96.87 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 96.87 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 96.86 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.86 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.85 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.85 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 96.8 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 96.78 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.74 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 96.66 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 96.65 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 96.65 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 96.64 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 96.62 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 96.56 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 96.52 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 96.52 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.5 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 96.46 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 96.45 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 96.43 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.36 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 96.34 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 96.31 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.29 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.28 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.27 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.2 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.96 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 95.87 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 95.87 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 95.84 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.81 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 95.81 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.76 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.71 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 95.57 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 95.5 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.47 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 95.43 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 95.31 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.25 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 95.18 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.13 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.11 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.1 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.07 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 95.06 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 94.98 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.89 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 94.84 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.78 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 94.76 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.63 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.61 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 94.54 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 94.53 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 94.49 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 94.49 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.49 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 94.48 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 94.47 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 94.44 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 94.41 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.38 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 94.37 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 94.35 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 94.34 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.26 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.2 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 94.15 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 94.14 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 94.12 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 94.11 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 94.08 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 94.06 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 94.05 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 94.01 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 93.93 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 93.9 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 93.89 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 93.87 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 93.85 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 93.84 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 93.84 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 93.83 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 93.81 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 93.81 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 93.81 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 93.8 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 93.73 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 93.72 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 93.63 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 93.63 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 93.61 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 93.58 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 93.55 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 93.54 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 93.54 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 93.5 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 93.47 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 93.46 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 93.45 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 93.44 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 93.42 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 93.42 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 93.41 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.37 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.34 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.33 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 93.33 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 93.31 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 93.29 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.26 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 93.22 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 93.15 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.14 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 93.12 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 93.11 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 93.09 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.05 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 93.04 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.02 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 93.01 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 92.98 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 92.97 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 92.92 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 92.92 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 92.89 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 92.88 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 92.87 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 92.87 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 92.82 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 92.78 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.74 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 92.72 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 92.72 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 92.71 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 92.71 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 92.67 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 92.64 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 92.63 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 92.61 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 92.58 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 92.57 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 92.57 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 92.55 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 92.55 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 92.53 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 92.52 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 92.49 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 92.47 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 92.43 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.41 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 92.37 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 92.34 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.34 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 92.32 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 92.26 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 92.26 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 92.25 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 92.25 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.25 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 92.21 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 92.2 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 92.15 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 92.12 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 92.11 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 92.1 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 92.09 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 92.07 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 92.05 |
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=317.98 Aligned_cols=341 Identities=20% Similarity=0.335 Sum_probs=260.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
|+++||+|||||++|+++|..|+++|.+|+|||+++.+||.|.. .++.+....+...+.++.++.+.....++++.++.
T Consensus 1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 4a9w_A 1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL 79 (357)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG-SCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC-CCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence 77799999999999999999999999999999999999999975 36666666666666777776666656678889999
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCC--CCCCCCCCCCCCCCcceee
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGE--NGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~--~~~~~~~~g~~~~~~~~~~ 157 (381)
+++.+++++++++++++++|++++.++ +.|. |.+.++ .+.||+||+|||. .|..|.++|.+.+.+..++
T Consensus 80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~v~~~~g------~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~ 151 (357)
T 4a9w_A 80 AYLAQYEQKYALPVLRPIRVQRVSHFG--ERLRVVARDGR------QWLARAVISATGTWGEAYTPEYQGLESFAGIQLH 151 (357)
T ss_dssp HHHHHHHHHTTCCEECSCCEEEEEEET--TEEEEEETTSC------EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEE
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEECC--CcEEEEEeCCC------EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEE
Confidence 999999999999999999999999876 6777 765542 7999999999996 4778899998888888889
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH--HHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 158 SSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV--FAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 158 ~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
+..+.....+.+++++|||+|.+|+|+|..|++.+ +|+++.|++.+++|.... .+...+.+.+. .
T Consensus 152 ~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------- 218 (357)
T 4a9w_A 152 SAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWK----A-------- 218 (357)
T ss_dssp GGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC-------------------
T ss_pred eccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHh----c--------
Confidence 88888777778999999999999999999999998 699999986566665422 11111111110 0
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecCCCCC
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGYKST 315 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 315 (381)
.....+.... ......+.....+.+.++.+.+.....+++++.+++.+.+|+++++|.||+|+|++|+
T Consensus 219 -----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 286 (357)
T 4a9w_A 219 -----QQEGREPDLP-------PGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPA 286 (357)
T ss_dssp ---------------------------CBCCCHHHHHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCC
T ss_pred -----cccccCCCcc-------cccccCcccChhHHHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCC
Confidence 0000000000 0000122334445556666666555558899999999999999999999999999999
Q ss_pred cchhccccCCcccccCCCCCCCCCC--CCCCCCcEEEEe--ccccc----ccCccHHHHHHHHHhhhccccC
Q 035902 316 VRNWLKRADKDFFDEYGMPKRNCPN--HWKGENGLYCAG--FSRTG----LHGISIDAKNIANDINLALTDH 379 (381)
Q Consensus 316 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~ifa~G--d~~~~----~~~a~~~a~~~a~~i~~~l~~~ 379 (381)
++ ++. . .++.+++|++.+| +. ..++.||||++| |+.+. ...|..||+.+|++|...|+++
T Consensus 287 ~~-~l~-~-~gl~~~~G~i~vd-~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g~ 354 (357)
T 4a9w_A 287 LS-HLK-G-LDLVTPQGQVEVD-GSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCADH 354 (357)
T ss_dssp CG-GGT-T-TTCBCTTSCBCBC-TTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC--
T ss_pred Cc-ccC-c-ccccCCCCCcccc-CCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 86 444 3 6666889999999 34 678999999999 66652 2289999999999999998763
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=321.06 Aligned_cols=306 Identities=21% Similarity=0.356 Sum_probs=239.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHh---CCCC---eEEEecCCCCCCCcCCCC---------------CCCeeeecCCccc
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNN---LSVP---NIILEREDCSASLWKKRA---------------YDRMKLHLAKQFC 59 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~---~g~~---v~lie~~~~~g~~~~~~~---------------~~~~~~~~~~~~~ 59 (381)
|. +||+|||||++|+++|..|++ .|.+ |+|||+++.+||.|.... |..+....+...+
T Consensus 1 M~-~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~ 79 (464)
T 2xve_A 1 MA-TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECL 79 (464)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGT
T ss_pred CC-CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhc
Confidence 63 799999999999999999999 9999 999999999999987532 3333333444444
Q ss_pred ccCCCCCCC----CCCCCCCHHHHHHHHHHHHHHhCCc--cccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 60 ELPHMPFPS----RTPTFVPRISFINYVDNYVSQMGIN--PRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 60 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
.++.++++. +.+.++++.++.+|++++++++++. ++++++|++++..+..+.|.|++.++..++...+.||+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VV 159 (464)
T 2xve_A 80 EFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159 (464)
T ss_dssp CBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred ccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEE
Confidence 444444322 1245778899999999999999987 7899999999987644589999887433444679999999
Q ss_pred EccC--CCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH
Q 035902 134 VATG--ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV 211 (381)
Q Consensus 134 lAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~ 211 (381)
+||| +.|..|.+||.+.+.+.++|+..+.+...+.+++++|||+|.+|+|+|..|++.|++|+++.|++ .+++..
T Consensus 160 vAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~-~~~~~~-- 236 (464)
T 2xve_A 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT-APMGYK-- 236 (464)
T ss_dssp ECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS-CCCCCC--
T ss_pred ECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC-CCCCCC--
Confidence 9999 67999999999888888899988877766789999999999999999999999999999999887 221110
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCC
Q 035902 212 FAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRN 291 (381)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~ 291 (381)
...+|+++..|++++++
T Consensus 237 ---------------------------------------------------------------~~~~V~~~~~V~~i~~~ 253 (464)
T 2xve_A 237 ---------------------------------------------------------------WPENWDERPNLVRVDTE 253 (464)
T ss_dssp ---------------------------------------------------------------CCTTEEECSCEEEECSS
T ss_pred ---------------------------------------------------------------CCCceEEcCCeEEEeCC
Confidence 01467777558888888
Q ss_pred eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCC--CCCCCCCCcEEEEeccccccc--CccHHHH
Q 035902 292 EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNC--PNHWKGENGLYCAGFSRTGLH--GISIDAK 366 (381)
Q Consensus 292 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~--~~~~~~~~~ifa~Gd~~~~~~--~a~~~a~ 366 (381)
+|.+.||+++++|.||+|||++|++++ +. +..++ ++..|++ ++. ....++.|+||++||+..... .|..||+
T Consensus 254 ~V~~~dG~~i~~D~Vi~atG~~p~~~~-l~-~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~~~~~~a~~qa~ 330 (464)
T 2xve_A 254 NAYFADGSSEKVDAIILCTGYIHHFPF-LN-DDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAW 330 (464)
T ss_dssp EEEETTSCEEECSEEEECCCBCCCCTT-BC-TTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCSSCHHHHHHHHH
T ss_pred EEEECCCCEEeCCEEEECCCCCCCCCC-cC-cccccccCCCccc-ccccceEecCCCCCEEEEeCcccccchHHHHHHHH
Confidence 999999999999999999999999864 44 32455 4444455 231 123478999999999886543 8889999
Q ss_pred HHHHHhhhcc
Q 035902 367 NIANDINLAL 376 (381)
Q Consensus 367 ~~a~~i~~~l 376 (381)
.+|++|.+.+
T Consensus 331 ~~a~~l~G~~ 340 (464)
T 2xve_A 331 YARDVIMGRL 340 (464)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHcCCC
Confidence 9999998754
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=319.82 Aligned_cols=363 Identities=18% Similarity=0.315 Sum_probs=269.7
Q ss_pred cccEEEECCCHHHHHHHHHHH-hCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCC----CCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLN-NLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP----FPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~-~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 77 (381)
++||+|||||++|+++|..|+ +.|.+|+|||+++.+||.|....|+.+..+.+...+.+...+ ...+...++.+.
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP 87 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence 479999999999999999999 889999999999999999998889998888777666554221 112223466788
Q ss_pred HHHHHHHHHHHHhCC--ccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC--CCCCCCCCCCCCCCCc
Q 035902 78 SFINYVDNYVSQMGI--NPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG--ENGLIPEVPGLGSFEG 153 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG--~~~~~~~~~g~~~~~~ 153 (381)
++.+|+...++++++ .++++++|++++.+++.+.|.|++.++ +.++||+||+||| +.|..|++||++.+.+
T Consensus 88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G-----~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g 162 (540)
T 3gwf_A 88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG-----EVYRAKYVVNAVGLLSAINFPNLPGLDTFEG 162 (540)
T ss_dssp HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS-----CEEEEEEEEECCCSCCSBCCCCCTTGGGCCS
T ss_pred HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC-----CEEEeCEEEECCcccccCCCCCCCCccccCC
Confidence 999999999999998 788999999999987657899998876 5799999999999 4699999999998989
Q ss_pred ceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH----HHH--
Q 035902 154 EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK----LVD-- 227 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~----~~~-- 227 (381)
..+|+..+.......+++++|||+|.+|+|+|..|++.+.+|+++.|++.+++|..+.++.....+.+... +..
T Consensus 163 ~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (540)
T 3gwf_A 163 ETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAK 242 (540)
T ss_dssp EEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHH
T ss_pred CEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHH
Confidence 99999988877777899999999999999999999999999999999997788876664444333322211 000
Q ss_pred -------------------------HHHHHHh---------------------------------hhhhcCccccCCCCC
Q 035902 228 -------------------------FIVVMLS---------------------------------KMKFGNLFKYGLERP 249 (381)
Q Consensus 228 -------------------------~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 249 (381)
.+...|. +....+.+.....
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l-- 320 (540)
T 3gwf_A 243 NSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKL-- 320 (540)
T ss_dssp TSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHH--
T ss_pred hccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhC--
Confidence 0000000 0000111111111
Q ss_pred CCCCcccccccCCCccccchhhhhhcCCCeEEc---cC-cceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhccc---
Q 035902 250 KKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVF---PS-ITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLKR--- 322 (381)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~--- 322 (381)
.|. ...++++.++.++++.+++.+|+++ .. |+++++++|.+.||+++++|+||+|||++++...+...
T Consensus 321 --~P~---~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~ 395 (540)
T 3gwf_A 321 --MPK---GLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIR 395 (540)
T ss_dssp --CCC---SCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEE
T ss_pred --CCC---CCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccccCcCcceEE
Confidence 111 3456788889999999999999999 56 99999999999999999999999999999987322110
Q ss_pred cCCcc-ccc--CCCCCCCCCCCCCCCCcEEEE-eccccc---ccCccHHHHHHHHHhhhccc
Q 035902 323 ADKDF-FDE--YGMPKRNCPNHWKGENGLYCA-GFSRTG---LHGISIDAKNIANDINLALT 377 (381)
Q Consensus 323 ~~~~~-~~~--~g~~~~~~~~~~~~~~~ifa~-Gd~~~~---~~~a~~~a~~~a~~i~~~l~ 377 (381)
...|. +++ .+.+.+.......+.||+|++ |+.... +..+..|+..+++.|....+
T Consensus 396 g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~~~~~ 457 (540)
T 3gwf_A 396 GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAER 457 (540)
T ss_dssp CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 221 122333322233578999999 876442 22778888888888865443
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-40 Score=313.31 Aligned_cols=363 Identities=18% Similarity=0.253 Sum_probs=264.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCC----CCCCCCCCCCHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP----FPSRTPTFVPRIS 78 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 78 (381)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|..+.|+.+.++.+...+.+...+ ...+...++++.+
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e 100 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE 100 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence 479999999999999999999999999999999999999998889998888887766654321 1123345778899
Q ss_pred HHHHHHHHHHHhCC--ccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC--CCCCCCCCCCCCCCCcc
Q 035902 79 FINYVDNYVSQMGI--NPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG--ENGLIPEVPGLGSFEGE 154 (381)
Q Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG--~~~~~~~~~g~~~~~~~ 154 (381)
+.+|+++.++++++ .++++++|++++.++..+.|.|++.++ ++++||+||+||| +.|..|.+||++.+.+.
T Consensus 101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G-----~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~ 175 (549)
T 4ap3_A 101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG-----DEVSARFLVVAAGPLSNANTPAFDGLDRFTGD 175 (549)
T ss_dssp HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC-----CEEEEEEEEECCCSEEECCCCCCTTGGGCCSE
T ss_pred HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC-----CEEEeCEEEECcCCCCCCCCCCCCCcccCCCc
Confidence 99999999999998 688999999999987667899998876 5799999999999 66999999999989898
Q ss_pred eeecCCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH----HHH--
Q 035902 155 YMHSSKYE-NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK----LVD-- 227 (381)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~----~~~-- 227 (381)
.+|+..+. +..++.+++++|||+|.+|+|+|..|++.+.+|++++|++.+++|..+.++.....+.+... ...
T Consensus 176 ~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r 255 (549)
T 4ap3_A 176 IVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSR 255 (549)
T ss_dssp EEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHH
T ss_pred eEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHH
Confidence 99998887 56677899999999999999999999999999999999998788887775555444433211 100
Q ss_pred ------------------------HHH-HHHh------------------------hhh-------hcCccccCCCCCCC
Q 035902 228 ------------------------FIV-VMLS------------------------KMK-------FGNLFKYGLERPKK 251 (381)
Q Consensus 228 ------------------------~~~-~~~~------------------------~~~-------~~~~~~~~~~~~~~ 251 (381)
.++ ..|. +.+ ..+.+......|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~- 334 (549)
T 4ap3_A 256 ESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPK- 334 (549)
T ss_dssp HSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCS-
T ss_pred hhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC-
Confidence 000 0000 000 0011100001111
Q ss_pred CCcccccccCCCccccchhhhhhcCCCeEEc---cC-cceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhccc---cC
Q 035902 252 GPFYFKAITGQTPTIDVGAMDKIRKGEIQVF---PS-ITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLKR---AD 324 (381)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~---~~ 324 (381)
.-....+++.++.++.+.+++.+|+++ .. |+++++++|.+.+| ++++|+||+|||++++...+... ..
T Consensus 335 ----~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~ 409 (549)
T 4ap3_A 335 ----DHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIVGR 409 (549)
T ss_dssp ----SCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGGGSEEECG
T ss_pred ----CCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCcEEeCCC-ceecCEEEECCcccccccccCceeEECC
Confidence 012345677888899999999999999 66 99999999999999 99999999999999886322110 11
Q ss_pred Ccc-cc--cCCCCCCCCCCCCCCCCcEEEE-eccccc-----ccCccHHHHHHHHHhhhcc
Q 035902 325 KDF-FD--EYGMPKRNCPNHWKGENGLYCA-GFSRTG-----LHGISIDAKNIANDINLAL 376 (381)
Q Consensus 325 ~~~-~~--~~g~~~~~~~~~~~~~~~ifa~-Gd~~~~-----~~~a~~~a~~~a~~i~~~l 376 (381)
.|. ++ ..+.+.+.......+.||+|.+ |.-... +..+..|+..+++.|....
T Consensus 410 ~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~ 470 (549)
T 4ap3_A 410 GGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLD 470 (549)
T ss_dssp GGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHHHHH
Confidence 222 22 1112222212223578999997 554321 1267788888888776543
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=315.91 Aligned_cols=360 Identities=18% Similarity=0.270 Sum_probs=259.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCC----CCCCCCCCCHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF----PSRTPTFVPRIS 78 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 78 (381)
++||+|||||++|+++|..|++.|.+++|||+++.+||+|....|+.+.++.+...+.+...+. ..+...++++.+
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~e 88 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE 88 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHH
Confidence 4799999999999999999999999999999999999999999999988887766665432221 122234678899
Q ss_pred HHHHHHHHHHHhCC--ccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC--CCCCCCCCCCCCCCCcc
Q 035902 79 FINYVDNYVSQMGI--NPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG--ENGLIPEVPGLGSFEGE 154 (381)
Q Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG--~~~~~~~~~g~~~~~~~ 154 (381)
+.+|++..++++++ .++++++|++++.++..+.|.|++.++ +.++||+||+||| +.|..|.+||++.|.+.
T Consensus 89 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G-----~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~ 163 (545)
T 3uox_A 89 MLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNE-----EVVTCRFLISATGPLSASRMPDIKGIDSFKGE 163 (545)
T ss_dssp HHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTT-----EEEEEEEEEECCCSCBC---CCCTTGGGCCSE
T ss_pred HHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCC-----CEEEeCEEEECcCCCCCCcCCCCCCccccCCC
Confidence 99999999999988 678999999999887667899999877 6899999999999 67999999999989898
Q ss_pred eeecCCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCc----H
Q 035902 155 YMHSSKYENG-------GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLP----C 223 (381)
Q Consensus 155 ~~~~~~~~~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~----~ 223 (381)
.+|+..+... ....+++++|||+|.+|+|+|..|++.+.+|+++.|++.+++|..+.++.....+.+. .
T Consensus 164 ~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~ 243 (545)
T 3uox_A 164 SFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPT 243 (545)
T ss_dssp EEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHH
T ss_pred eEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHH
Confidence 9999887665 6668999999999999999999999999999999999977888766543333332221 1
Q ss_pred HHHH---------------------------HHHHHH-----------------------------h---hhhhcCcccc
Q 035902 224 KLVD---------------------------FIVVML-----------------------------S---KMKFGNLFKY 244 (381)
Q Consensus 224 ~~~~---------------------------~~~~~~-----------------------------~---~~~~~~~~~~ 244 (381)
.+.. .+...| . +....+.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 323 (545)
T 3uox_A 244 ILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVA 323 (545)
T ss_dssp HHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1000 000000 0 0000111110
Q ss_pred CCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEc---cC-cceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhc
Q 035902 245 GLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVF---PS-ITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWL 320 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~ 320 (381)
....|. . ....++++.++.++++.+++.+|+++ .. |+++++++|.+.|| ++++|+||+|||+++++..+.
T Consensus 324 ~~l~P~---~--~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~~~~~ 397 (545)
T 3uox_A 324 EKLIPK---D--HPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVTGSLD 397 (545)
T ss_dssp HHTSCS---S--SCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSSCSCT
T ss_pred HhCCCC---C--CCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCeEEeCCC-eeecCEEEECCccccccccCC
Confidence 001110 0 12335677888999999999999999 45 99999999999999 999999999999998753221
Q ss_pred cccCCcccccCCC---------CCCCCCCCCCCCCcEEEEe-ccccc-----ccCccHHHHHHHHHhhhcc
Q 035902 321 KRADKDFFDEYGM---------PKRNCPNHWKGENGLYCAG-FSRTG-----LHGISIDAKNIANDINLAL 376 (381)
Q Consensus 321 ~~~~~~~~~~~g~---------~~~~~~~~~~~~~~ifa~G-d~~~~-----~~~a~~~a~~~a~~i~~~l 376 (381)
. ..+...+|. +..-......+.||+|.+. .-... +..+..|+..+++.|....
T Consensus 398 ~---~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~ 465 (545)
T 3uox_A 398 R---IDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISYMK 465 (545)
T ss_dssp T---SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C---ceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 1 222222332 2221112235789999884 33221 1267788888888876544
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=308.68 Aligned_cols=362 Identities=18% Similarity=0.268 Sum_probs=260.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCC----CCCCCCCCCHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPF----PSRTPTFVPRIS 78 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 78 (381)
++||+|||||++|+++|+.|++.|.+++|||+++.+||.|....|+.+.++.+...+.+...+. ..+...++.+.+
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 95 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHH
Confidence 4899999999999999999999999999999999999999888888877766655544331110 012234677899
Q ss_pred HHHHHHHHHHHhC--CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC--CCCCCCCCCCCCCCcc
Q 035902 79 FINYVDNYVSQMG--INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE--NGLIPEVPGLGSFEGE 154 (381)
Q Consensus 79 ~~~~~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~--~~~~~~~~g~~~~~~~ 154 (381)
+.+|++..+++++ ..++++++|++++.+++.+.|.|++.++ ++++||+||+|||. .|..|.+||++.+.|.
T Consensus 96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G-----~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~ 170 (542)
T 1w4x_A 96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG-----DRIRARYLIMASGQLSVPQLPNFPGLKDFAGN 170 (542)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC-----CEEEEEEEEECCCSCCCCCCCCCTTGGGCCSE
T ss_pred HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCC-----CEEEeCEEEECcCCCCCCCCCCCCCcccCCCc
Confidence 9999999999886 4578899999999876556899988766 57999999999995 4888999999888898
Q ss_pred eeecCCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHH----HHHHHHhhCcHHHHH--
Q 035902 155 YMHSSKYE-NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVF----AGMLLLKFLPCKLVD-- 227 (381)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~----~~~~~~~~l~~~~~~-- 227 (381)
.+|+..+. +..++.+++++|||+|.+|+|++..+++.+.+|+++.|.+.+.+|..+.+ ....+.+.+|.....
T Consensus 171 ~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~ 250 (542)
T 1w4x_A 171 LYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESR 250 (542)
T ss_dssp EEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHH
T ss_pred eEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHH
Confidence 89988876 44566899999999999999999999999999999999996666754432 222222212111000
Q ss_pred ------------------------HHHH-HH-------------------------------hhhhhcCccccCCCCCCC
Q 035902 228 ------------------------FIVV-ML-------------------------------SKMKFGNLFKYGLERPKK 251 (381)
Q Consensus 228 ------------------------~~~~-~~-------------------------------~~~~~~~~~~~~~~~~~~ 251 (381)
.+.. .+ .+....+........|.
T Consensus 251 ~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~- 329 (542)
T 1w4x_A 251 NTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPK- 329 (542)
T ss_dssp TSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCC-
T ss_pred hhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCC-
Confidence 0000 00 00000111111111110
Q ss_pred CCcccccccCCCccccchhhhhhcCCCeEEc---cC-cceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc
Q 035902 252 GPFYFKAITGQTPTIDVGAMDKIRKGEIQVF---PS-ITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF 327 (381)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~ 327 (381)
.....++++.++.++++.+++.+|+++ .. |+++++++|.+.| +++++|.||+|||+++++..+.. .++
T Consensus 330 ----~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~---~~i 401 (542)
T 1w4x_A 330 ----GYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFK---IDI 401 (542)
T ss_dssp ----SSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHT---SEE
T ss_pred ----CCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCc---eee
Confidence 112456778899999999999999998 55 9999999999999 99999999999999998643322 333
Q ss_pred cccCCCCCCC----CC-----CCCCCCCcEEEE-ecccc--cc---cCccHHHHHHHHHhhhcccc
Q 035902 328 FDEYGMPKRN----CP-----NHWKGENGLYCA-GFSRT--GL---HGISIDAKNIANDINLALTD 378 (381)
Q Consensus 328 ~~~~g~~~~~----~~-----~~~~~~~~ifa~-Gd~~~--~~---~~a~~~a~~~a~~i~~~l~~ 378 (381)
...+|....+ .+ ....+.||+|++ |+... .. ..+..|++.++++|....++
T Consensus 402 ~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~ 467 (542)
T 1w4x_A 402 RGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKN 467 (542)
T ss_dssp ECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333322221 11 122477999998 99853 22 27889999999999876543
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=284.22 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=221.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+.+||+|||||++|+++|..|++.|.+|+|||++...+..+... ..++. ....+..++.+
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~-------------~~~~~-------~~~~~~~~~~~ 60 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS-------------HGFLG-------QDGKAPGEIIA 60 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC-------------CSSTT-------CTTCCHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh-------------cCCcC-------CCCCCHHHHHH
Confidence 04899999999999999999999999999999976433221100 00000 12356778899
Q ss_pred HHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC
Q 035902 82 YVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~ 160 (381)
++.+.++++ ++.+ .+++|++++.++ +.|.+.+.++ ..+.||+||+|||+.|..|.+||.+.+.+...+.+.
T Consensus 61 ~~~~~~~~~~~v~~-~~~~v~~i~~~~--~~~~v~~~~g-----~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~ 132 (297)
T 3fbs_A 61 EARRQIERYPTIHW-VEGRVTDAKGSF--GEFIVEIDGG-----RRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCP 132 (297)
T ss_dssp HHHHHHTTCTTEEE-EESCEEEEEEET--TEEEEEETTS-----CEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCH
T ss_pred HHHHHHHhcCCeEE-EEeEEEEEEEcC--CeEEEEECCC-----CEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcc
Confidence 999888877 5554 356899998876 6688888776 679999999999999999999998776555566655
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcC
Q 035902 161 YENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGN 240 (381)
Q Consensus 161 ~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (381)
+.+.....+++++|+|+|.+|+|+|..|.+.| +|+++.+.+. .+
T Consensus 133 ~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~-~~---------------------------------- 176 (297)
T 3fbs_A 133 YCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV-EP---------------------------------- 176 (297)
T ss_dssp HHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC-CC----------------------------------
T ss_pred cCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC-CC----------------------------------
Confidence 55555567899999999999999999999998 9999988762 11
Q ss_pred ccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC-eEEEcCCcEeeccEEEEecCCCCCcch
Q 035902 241 LFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN-EVEFENGKIEEFEAIIFATGYKSTVRN 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~-~v~~~~g~~~~~D~vi~a~G~~p~~~~ 318 (381)
...+.+.+++.+|+++.. +++++.+ .+.+++|+++++|.|++|+|++|+.+.
T Consensus 177 --------------------------~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~ 230 (297)
T 3fbs_A 177 --------------------------DADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDW 230 (297)
T ss_dssp --------------------------CHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSC
T ss_pred --------------------------CHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchh
Confidence 111244556678888866 8888887 789999999999999999999999853
Q ss_pred hccccCCcc-cc--cCC-CCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhccccCC
Q 035902 319 WLKRADKDF-FD--EYG-MPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 319 ~~~~~~~~~-~~--~~g-~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l~~~~ 380 (381)
+. . .++ ++ +.| ++.+| +..+++.||||++|||++.+. .|..||+.+|.+|...|....
T Consensus 231 -~~-~-~g~~~~~~~~G~~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 295 (297)
T 3fbs_A 231 -IE-K-LGCAVEEGPMGSTIVTD-PMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILFPE 295 (297)
T ss_dssp -HH-H-HTCCEEEETTEEEECCC-TTCBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred -HH-h-cCCccccCCCCceEEeC-CCCccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 33 2 444 33 357 88888 557789999999999998544 899999999999999887643
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=295.51 Aligned_cols=303 Identities=21% Similarity=0.326 Sum_probs=229.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCC-------------------------------
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYD------------------------------- 48 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~------------------------------- 48 (381)
+.+||+|||||++|+++|..|++.|. +|+|||+++.+||.|......
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 35899999999999999999999999 999999999999988754211
Q ss_pred --CeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCc-eE
Q 035902 49 --RMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDA-YE 125 (381)
Q Consensus 49 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~-~~ 125 (381)
.+....+.....+..++++...+.++.+.++.+|+++++++++..++++++|++++..+ +.|.|++.+...++ ..
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~--~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET--TEEEEEEEESSTTCCEE
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC--CeEEEEEeecCCCCeeE
Confidence 11111122223344455555556678889999999999998887888999999998865 67889887622222 34
Q ss_pred EEEeCEEEEccCC--CCCCCCCCCCCCC----CcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCe-eEEE
Q 035902 126 EYVARYLVVATGE--NGLIPEVPGLGSF----EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGAC-TSIV 198 (381)
Q Consensus 126 ~~~~d~vIlAtG~--~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i 198 (381)
.+.||+||+|||. .|..|.++|++.+ ++.+.|+..+.+...+.+++++|||+|.+|+|+|..|++.+.+ |+++
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~ 242 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQS 242 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEE
T ss_pred EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEE
Confidence 7999999999999 5888889987643 4568888888777677899999999999999999999999999 9999
Q ss_pred EecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCC
Q 035902 199 VRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGE 278 (381)
Q Consensus 199 ~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (381)
.|++. + ++..+
T Consensus 243 ~r~~~-~--------------------------------------------------------------------l~~~~ 253 (447)
T 2gv8_A 243 LLGGG-D--------------------------------------------------------------------IQNES 253 (447)
T ss_dssp CTTCC-S--------------------------------------------------------------------CBCSS
T ss_pred eCCCC-c--------------------------------------------------------------------CCCCC
Confidence 98872 1 13345
Q ss_pred eEEccCcceEe--CCeEEEcCCcE-eeccEEEEecCCCCCcchh----ccccCCcccccCCCCCCCCCCC--CCCCCcEE
Q 035902 279 IQVFPSITSIN--RNEVEFENGKI-EEFEAIIFATGYKSTVRNW----LKRADKDFFDEYGMPKRNCPNH--WKGENGLY 349 (381)
Q Consensus 279 v~~~~~v~~v~--~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~----~~~~~~~~~~~~g~~~~~~~~~--~~~~~~if 349 (381)
|.+...|+++. +.+|.+.||++ +++|.||+|||++|+++++ +. ...+-+..+++..++.... .++.|+||
T Consensus 254 i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~-~~~~~i~~~~~~~~~~~~~v~~~~~p~l~ 332 (447)
T 2gv8_A 254 LQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLK-SPETKLIDDGSHVHNVYQHIFYIPDPTLA 332 (447)
T ss_dssp EEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCC-STTTCCCSSSSSCCSEETTTEETTCTTEE
T ss_pred eEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCcccccc-cccCceecCCCcccccccccccCCCCcEE
Confidence 66555577884 35799999986 7999999999999998641 33 2111123355555541111 26789999
Q ss_pred EEeccccccc--CccHHHHHHHHHhhhcc
Q 035902 350 CAGFSRTGLH--GISIDAKNIANDINLAL 376 (381)
Q Consensus 350 a~Gd~~~~~~--~a~~~a~~~a~~i~~~l 376 (381)
++||+..... .|..||+.+|++|.+.+
T Consensus 333 ~~G~~~~~~~~~~a~~qa~~~a~~~~g~~ 361 (447)
T 2gv8_A 333 FVGLALHVVPFPTSQAQAAFLARVWSGRL 361 (447)
T ss_dssp ESSCCBSSCHHHHHHHHHHHHHHHHTTSS
T ss_pred EEeccccccCchHHHHHHHHHHHHHcCCC
Confidence 9999976533 88899999999998754
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=286.89 Aligned_cols=286 Identities=16% Similarity=0.233 Sum_probs=224.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+|||||++|+++|+.|++.|.+|+|||++ +||.|.... ....++.++ .....++.++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~----------~~~~~~~~~-------~~~~~~~~~~ 75 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAG----------IVDDYLGLI-------EIQASDMIKV 75 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCC----------EECCSTTST-------TEEHHHHHHH
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccc----------cccccCCCC-------CCCHHHHHHH
Confidence 479999999999999999999999999999998 777665410 001111111 1456789999
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.++++++++++ ++|.+++.++ +.|.+.+.++ ..+.||+||+|||+.|..|.++|...+.+..++.....
T Consensus 76 ~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~~g-----~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~ 147 (323)
T 3f8d_A 76 FNKHIEKYEVPVLL-DIVEKIENRG--DEFVVKTKRK-----GEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVA 147 (323)
T ss_dssp HHHHHHTTTCCEEE-SCEEEEEEC----CEEEEESSS-----CEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHH
T ss_pred HHHHHHHcCCEEEE-EEEEEEEecC--CEEEEEECCC-----CEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccC
Confidence 99999999999888 8999998865 5677888775 57999999999999999999999887665556555444
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|+|+|.+|+|+|..|.+.+.+|+++.|.+ .+.+..
T Consensus 148 ~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~-~~~~~~--------------------------------- 193 (323)
T 3f8d_A 148 DAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRD-TFKAQP--------------------------------- 193 (323)
T ss_dssp HGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSS-SCCSCH---------------------------------
T ss_pred CHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCC-CCCcCH---------------------------------
Confidence 4445578999999999999999999999999999999988 443310
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhh-hcCCCeEEccC--cceEeCC----eEEEcC---Cc--EeeccEEEEec
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDK-IRKGEIQVFPS--ITSINRN----EVEFEN---GK--IEEFEAIIFAT 310 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~--v~~v~~~----~v~~~~---g~--~~~~D~vi~a~ 310 (381)
.+.+. .++.+|+++.+ +.++..+ .+.+.+ |+ ++++|.||+|+
T Consensus 194 --------------------------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~ 247 (323)
T 3f8d_A 194 --------------------------IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEI 247 (323)
T ss_dssp --------------------------HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECC
T ss_pred --------------------------HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEE
Confidence 11222 23458999888 8888765 477765 76 79999999999
Q ss_pred CCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc---cc---CccHHHHHHHHHhhhccccC
Q 035902 311 GYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG---LH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 311 G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~---~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
|++|+.+. +. . .++ ++++|++.+| +..+++.||||++|||++. +. .|..||+.+|++|...+.+.
T Consensus 248 G~~p~~~~-~~-~-~g~~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 319 (323)
T 3f8d_A 248 GFDPPTDF-AK-S-NGIETDTNGYIKVD-EWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319 (323)
T ss_dssp CEECCHHH-HH-H-TTCCBCTTSSBCCC-TTCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCChhH-Hh-h-cCeeecCCCcEecC-CCceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHHh
Confidence 99999853 43 3 555 6889999999 5677899999999999885 22 89999999999999988654
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=284.14 Aligned_cols=290 Identities=17% Similarity=0.236 Sum_probs=219.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+|||||++|+++|..|++.|.+|+|||++ .+||.|..... +..++.+ +......++.++
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~~------~~~~~~~~~~~~ 70 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEE----------VENFPGF------PEPIAGMELAQR 70 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSC----------BCCSTTC------SSCBCHHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccc----------cccCCCC------CCCCCHHHHHHH
Confidence 489999999999999999999999999999998 57776543210 0011111 223456788899
Q ss_pred HHHHHHHhCCccccccEEEEEEEe--CCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYD--ENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~ 160 (381)
+.+.+++++++++. ++|.+++.. + ...|.+.+.++ ..+.||+||+|||+.|..|.++|.+.+.+..++...
T Consensus 71 l~~~~~~~gv~~~~-~~v~~i~~~~~~-~~~~~v~~~~g-----~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~ 143 (325)
T 2q7v_A 71 MHQQAEKFGAKVEM-DEVQGVQHDATS-HPYPFTVRGYN-----GEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCA 143 (325)
T ss_dssp HHHHHHHTTCEEEE-CCEEEEEECTTS-SSCCEEEEESS-----CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCH
T ss_pred HHHHHHHcCCEEEe-eeEEEEEeccCC-CceEEEEECCC-----CEEEeCEEEECcCCCcCCCCCCChhhccCceEEEec
Confidence 99999999998876 688888876 3 12266777665 579999999999999998889998766554455543
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcC
Q 035902 161 YENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGN 240 (381)
Q Consensus 161 ~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (381)
..+.....+++++|||+|.+|+|+|..|.+.+.+|+++.|.+ .+.+.
T Consensus 144 ~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~~-------------------------------- 190 (325)
T 2q7v_A 144 TCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD-TLRAN-------------------------------- 190 (325)
T ss_dssp HHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS-SCCSC--------------------------------
T ss_pred cCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC-cCCcc--------------------------------
Confidence 333334468999999999999999999999999999999887 32110
Q ss_pred ccccCCCCCCCCCcccccccCCCccccchhhhhh-cCCCeEEccC--cceEeCC----eEEEc---CCc--EeeccEEEE
Q 035902 241 LFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKI-RKGEIQVFPS--ITSINRN----EVEFE---NGK--IEEFEAIIF 308 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~--v~~v~~~----~v~~~---~g~--~~~~D~vi~ 308 (381)
..+.+.+ ++.+|+++.+ ++++..+ ++.++ +|+ ++++|.||+
T Consensus 191 ---------------------------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~ 243 (325)
T 2q7v_A 191 ---------------------------KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFI 243 (325)
T ss_dssp ---------------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred ---------------------------hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEE
Confidence 0012222 3468888887 7787654 56665 565 789999999
Q ss_pred ecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-c---CccHHHHHHHHHhhhccccCC
Q 035902 309 ATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-H---GISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-~---~a~~~a~~~a~~i~~~l~~~~ 380 (381)
|+|++|+++ ++. . .-.++++|++.+| +.++++.||||++|||.+.. . .|..||+.+|.+|...|.+.+
T Consensus 244 a~G~~p~~~-~l~-~-~~~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 315 (325)
T 2q7v_A 244 FIGHVPNTA-FVK-D-TVSLRDDGYVDVR-DEIYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLAALE 315 (325)
T ss_dssp CSCEEESCG-GGT-T-TSCBCTTSCBCCB-TTTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCCChH-HHh-h-hcccCCCccEecC-CCCccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999985 344 3 3226778999999 45678899999999998752 2 899999999999999886653
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=283.86 Aligned_cols=287 Identities=18% Similarity=0.266 Sum_probs=217.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+||+|||||++|+++|..|++.|. +|+|||++ ..||.|..... ...++. ++......++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~~~ 64 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSE----------IENYPG------VKEVVSGLDFMQP 64 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSC----------BCCSTT------CCSCBCHHHHHHH
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccccccc----------cccCCC------CcccCCHHHHHHH
Confidence 799999999999999999999999 99999995 56665543210 001111 1224567889999
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.++++++++++ ++|.+++.++ +.|.+.+.++ ..++||+||+|||+.|..|+++|.+.+.+..++.....
T Consensus 65 l~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~~~g-----~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~ 136 (311)
T 2q0l_A 65 WQEQCFRFGLKHEM-TAVQRVSKKD--SHFVILAEDG-----KTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATC 136 (311)
T ss_dssp HHHHHHTTSCEEEC-SCEEEEEEET--TEEEEEETTS-----CEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHH
T ss_pred HHHHHHHcCCEEEE-EEEEEEEEcC--CEEEEEEcCC-----CEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecC
Confidence 99989888998877 7899998876 5677777655 57999999999999998888888754433334444333
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|||+|.+|+|+|..|.+.|.+|+++.|++ .+.. .
T Consensus 137 ~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~--~-------------------------------- 181 (311)
T 2q0l_A 137 DGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD-GFRC--A-------------------------------- 181 (311)
T ss_dssp HGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSS-SCCS--C--------------------------------
T ss_pred ChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCC-ccCC--C--------------------------------
Confidence 3333467999999999999999999999999999999887 3211 0
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhc-CCCeEEccC--cceEeCC-----eEEEc---CCc--EeeccEEEEe
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR-KGEIQVFPS--ITSINRN-----EVEFE---NGK--IEEFEAIIFA 309 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--v~~v~~~-----~v~~~---~g~--~~~~D~vi~a 309 (381)
..+.+.+. +.+|+++.+ +.++..+ .+.++ +|+ ++++|.||+|
T Consensus 182 -------------------------~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a 236 (311)
T 2q0l_A 182 -------------------------PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIF 236 (311)
T ss_dssp -------------------------HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred -------------------------HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEE
Confidence 01122333 468888887 7777653 46665 675 7899999999
Q ss_pred cCCCCCcchhccccCC----cc-cccCCCCCCCCCCCCCCCCcEEEEeccccc-cc---CccHHHHHHHHHhhhccccC
Q 035902 310 TGYKSTVRNWLKRADK----DF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-LH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~----~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
+|++|+++. +. . . ++ ++++|++.+| +.++++.||||++|||.+. +. .|..||+.+|++|.+.|.++
T Consensus 237 ~G~~p~~~~-l~-~-~g~~~~l~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 311 (311)
T 2q0l_A 237 VGYDVNNAV-LK-Q-EDNSMLCKCDEYGSIVVD-FSMKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLEHH 311 (311)
T ss_dssp SCEEECCGG-GB-C-TTSCBSSCBCTTSCBCCC-TTCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ecCccChhh-hh-c-ccccceeEeccCCCEEeC-CccccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHhhC
Confidence 999999854 33 3 3 24 6778999999 5677899999999999875 22 89999999999999988653
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=287.82 Aligned_cols=291 Identities=17% Similarity=0.240 Sum_probs=227.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+|||||++|+++|+.|++.|.+|+|||+++.+||.|... ++.... ..++.++ .....++..+
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~-~~~~~~------~~~~~~~-------~~~~~~~~~~ 72 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL-YPEKYI------YDVAGFP-------KIRAQELINN 72 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHH-CTTSEE------CCSTTCS-------SEEHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhc-CCCceE------eccCCCC-------CCCHHHHHHH
Confidence 3799999999999999999999999999999999999887431 211111 1111111 1246789999
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC---CCCCCCCCCCCCCCcceeecC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE---NGLIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~---~~~~~~~~g~~~~~~~~~~~~ 159 (381)
+.+.++++++.++++++|.+++... .+.|.|.+.++ + +.||+||+|||+ .|..|.++|.+.+.+..++.
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~g-----~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~- 144 (332)
T 3lzw_A 73 LKEQMAKFDQTICLEQAVESVEKQA-DGVFKLVTNEE-----T-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY- 144 (332)
T ss_dssp HHHHHTTSCCEEECSCCEEEEEECT-TSCEEEEESSE-----E-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-
T ss_pred HHHHHHHhCCcEEccCEEEEEEECC-CCcEEEEECCC-----E-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-
Confidence 9999999999999999999998875 24788888775 3 999999999999 78888899987766666666
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 160 KYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 160 ~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
.+.+...+.+++++|||+|.+|+|+|..|.+.+.+|+++.|.+ .+.+...
T Consensus 145 ~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~-~~~~~~~----------------------------- 194 (332)
T 3lzw_A 145 FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRD-KFRAHEH----------------------------- 194 (332)
T ss_dssp SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSS-SCSSCHH-----------------------------
T ss_pred ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecC-cCCccHH-----------------------------
Confidence 5555556678999999999999999999999999999999987 3322110
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcC-----CcEeeccEEEE
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFEN-----GKIEEFEAIIF 308 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~-----g~~~~~D~vi~ 308 (381)
..+.+++.+|+++.+ +.++..+ .+.+.+ ++++++|.||+
T Consensus 195 ------------------------------~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~ 244 (332)
T 3lzw_A 195 ------------------------------SVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIV 244 (332)
T ss_dssp ------------------------------HHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEE
T ss_pred ------------------------------HHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEE
Confidence 123345678888887 8888765 377766 45799999999
Q ss_pred ecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccc---ccc---CccHHHHHHHHHhhhccccC
Q 035902 309 ATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRT---GLH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~---~~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
|+|++|+.+. +. . .++-.++|++.+| +..+++.||||++|||+. .+. .|..||+.+|++|...++..
T Consensus 245 a~G~~p~~~~-~~-~-~~~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 317 (332)
T 3lzw_A 245 NYGFVSSLGP-IK-N-WGLDIEKNSIVVK-STMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMDPK 317 (332)
T ss_dssp CCCEECCCGG-GG-G-SSCCEETTEEECC-TTSBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred eeccCCCchH-Hh-h-cCccccCCeEEeC-CCCceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhChh
Confidence 9999999864 43 3 5653378899998 566788999999999984 332 88899999999999988653
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=285.01 Aligned_cols=287 Identities=18% Similarity=0.246 Sum_probs=200.1
Q ss_pred CC--cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCCeeeecCCcccccCCCCCCCCCCCCCCHH
Q 035902 1 ME--EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK-KRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 1 M~--~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
|+ +|||+||||||||++||..|++.|.+|+|||+.. +||... .... ..++.+ ......
T Consensus 2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~-~gG~~~~~~~i-----------~~~p~~-------~~~~~~ 62 (312)
T 4gcm_A 2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI-PGGQMANTEEV-----------ENFPGF-------EMITGP 62 (312)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGCSCB-----------CCSTTC-------SSBCHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCeeeccccc-----------CCcCCc-------cccchH
Confidence 65 4899999999999999999999999999999864 554321 1111 011111 123456
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
++.........+....+..+..+....... . . +...++ .+++||+||||||+.|..|++||.+.+.+..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~-----~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~ 133 (312)
T 4gcm_A 63 DLSTKMFEHAKKFGAVYQYGDIKSVEDKGE--Y-K-VINFGN-----KELTAKAVIIATGAEYKKIGVPGEQELGGRGVS 133 (312)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCEEEECSS--C-E-EEECSS-----CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEE
T ss_pred HHHHHHHHHHhhccccccceeeeeeeeeec--c-e-eeccCC-----eEEEeceeEEcccCccCcCCCCChhhhCCccEE
Confidence 677666666666666665555444443322 2 1 333333 689999999999999999999998877666666
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhh
Q 035902 158 SSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMK 237 (381)
Q Consensus 158 ~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (381)
++...+...+.+++++|||+|++|+|+|..|++.|.+|++++|++ .+++.....
T Consensus 134 ~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~~~~~~~~------------------------- 187 (312)
T 4gcm_A 134 YCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD-ELRAQRILQ------------------------- 187 (312)
T ss_dssp SCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS-SCCSCHHHH-------------------------
T ss_pred eeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc-ccCcchhHH-------------------------
Confidence 665555556678999999999999999999999999999999998 555543221
Q ss_pred hcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CC-----eEE---EcCCcEeeccE
Q 035902 238 FGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RN-----EVE---FENGKIEEFEA 305 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~-----~v~---~~~g~~~~~D~ 305 (381)
...++..++..... +.... .. ... ..++..+++|.
T Consensus 188 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (312)
T 4gcm_A 188 ---------------------------------DRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADG 234 (312)
T ss_dssp ---------------------------------HHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSE
T ss_pred ---------------------------------HHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeee
Confidence 01111222222222 11111 11 111 12335789999
Q ss_pred EEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-c---CccHHHHHHHHHhhhcccc
Q 035902 306 IIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-H---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-~---~a~~~a~~~a~~i~~~l~~ 378 (381)
+++++|.+|+.... . . .++.+++|++.+| +.++|+.|||||+|||++.. . .|..||+.+|++|+++|+.
T Consensus 235 v~~~~g~~~~~~~~-~-~-~g~~~~~G~I~vd-~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 235 VFIYIGMKPLTAPF-K-D-LGITNDVGYIVTK-DDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp EEECSCEEESCGGG-G-G-GTCBCTTSCBCCC-TTSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCCCcCchhH-H-h-cceecCCCeEeeC-CCCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998533 3 2 6777889999999 67789999999999998643 2 7899999999999998853
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=287.39 Aligned_cols=295 Identities=16% Similarity=0.213 Sum_probs=202.8
Q ss_pred CCc-ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHH
Q 035902 1 MEE-VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISF 79 (381)
Q Consensus 1 M~~-~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (381)
|++ |||+||||||||++||..|+++|++|+|||+....+..+....+.. .....++. ++...+..++
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~------~~i~~~~g------~~~~i~~~~l 68 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTT------TIIENFPG------FPNGIDGNEL 68 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGS------SEECCSTT------CTTCEEHHHH
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCCh------HHhhhccC------CcccCCHHHH
Confidence 765 9999999999999999999999999999998752221111111110 00111111 2334456788
Q ss_pred HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecC
Q 035902 80 INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~ 159 (381)
...+.+.+++++..+... .+....... ..+.+.+.++ .++.||+||+|||+.|+.|++||.+...+...+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~~~~~~~-----~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~ 140 (314)
T 4a5l_A 69 MMNMRTQSEKYGTTIITE-TIDHVDFST--QPFKLFTEEG-----KEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSAC 140 (314)
T ss_dssp HHHHHHHHHHTTCEEECC-CEEEEECSS--SSEEEEETTC-----CEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESC
T ss_pred HHHHHHHHhhcCcEEEEe-EEEEeecCC--CceEEEECCC-----eEEEEeEEEEcccccccccCCCccccccccceeee
Confidence 888888888888776543 455555443 4454555554 68999999999999999999999765444444444
Q ss_pred CCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhh
Q 035902 160 KYENGG--KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMK 237 (381)
Q Consensus 160 ~~~~~~--~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (381)
...... ...+++++|||+|.+|+|+|..|+++|.+|+++.|.+. ..+.... .
T Consensus 141 ~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~-~~~~~~~--~----------------------- 194 (314)
T 4a5l_A 141 AICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA-FRASKTM--Q----------------------- 194 (314)
T ss_dssp HHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS-CCSCHHH--H-----------------------
T ss_pred hhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc-ccccchh--h-----------------------
Confidence 433222 24689999999999999999999999999999998873 2221110 0
Q ss_pred hcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEE-----cCCcEeeccE
Q 035902 238 FGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEF-----ENGKIEEFEA 305 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~-----~~g~~~~~D~ 305 (381)
.......++..+.. +.++... ++.+ .+++++++|.
T Consensus 195 ---------------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~ 241 (314)
T 4a5l_A 195 ---------------------------------ERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAG 241 (314)
T ss_dssp ---------------------------------HHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSE
T ss_pred ---------------------------------hhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeecccc
Confidence 11112222333322 2233221 2322 2456899999
Q ss_pred EEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccccC
Q 035902 306 IIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~~ 379 (381)
+++++|++||++. +. . ...++++|++. + +.++|+.|||||+|||++.+. .|+.||+.+|.+|.++|++|
T Consensus 242 vi~a~G~~pn~~~-l~-~-~~~~~~~G~iv-~-~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~H 314 (314)
T 4a5l_A 242 LFYAIGHSPNSKF-LG-G-QVKTADDGYIL-T-EGPKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQTH 314 (314)
T ss_dssp EEECSCEEESCGG-GT-T-SSCBCTTSCBC-C-BTTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEecccccChhH-hc-c-cceEcCCeeEe-C-CCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999964 33 2 34478888774 4 367899999999999987654 68899999999999999987
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=282.12 Aligned_cols=286 Identities=18% Similarity=0.240 Sum_probs=206.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
|++|||+||||||||++||+.|++.|.+|+|||++. .+|.+... ++.++. ....+..++.
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~~~~---------------~~~~~~----~~~~~~~~~~ 63 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRVTQN---------------SHGFIT----RDGIKPEEFK 63 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGGSSC---------------BCCSTT----CTTBCHHHHH
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCeeeee---------------cCCccC----CCCCCHHHHH
Confidence 888999999999999999999999999999999975 34322111 111111 1123456676
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~ 160 (381)
+...+.+.+++........+..+...+ .+.+.+.+.++ ++++||+||||||+.|..|++||.+.+.+..+..+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~g-----~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~ 137 (304)
T 4fk1_A 64 EIGLNEVMKYPSVHYYEKTVVMITKQS-TGLFEIVTKDH-----TKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCP 137 (304)
T ss_dssp HHHHHHHTTSTTEEEEECCEEEEEECT-TSCEEEEETTC-----CEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCH
T ss_pred HHHHHHHHhcCCEEEEeeEEEEeeecC-CCcEEEEECCC-----CEEEeCEEEEccCCccccccccCccccccceeeecc
Confidence 666666666654445555666665544 35677887776 689999999999999999999997765554455554
Q ss_pred CCCCCCCCCCeEEEEcCCCC-HHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 161 YENGGKFIGKNVLVVGCGNS-GMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 161 ~~~~~~~~~~~v~viG~G~~-~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
..+.....+++++|||||.. ++++|..+.+.+.+|+++.|.+ .+.+
T Consensus 138 ~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~-~~~~-------------------------------- 184 (304)
T 4fk1_A 138 YCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN-ELSQ-------------------------------- 184 (304)
T ss_dssp HHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC-CCCH--------------------------------
T ss_pred ccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccc-cchh--------------------------------
Confidence 44445556788888888865 6789999999999999988776 2211
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC-----eEEEcCCcEeeccEEEEecCCC
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN-----EVEFENGKIEEFEAIIFATGYK 313 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~ 313 (381)
...+.+++.++.++.. +..+..+ .+.+++|+++++|.++++.|.+
T Consensus 185 -----------------------------~~~~~l~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~ 235 (304)
T 4fk1_A 185 -----------------------------TIMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFF 235 (304)
T ss_dssp -----------------------------HHHHHHHTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEE
T ss_pred -----------------------------hhhhhhhccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeeeccc
Confidence 1133344555566655 5555543 5788999999999988888777
Q ss_pred CCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 314 STVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 314 p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
|+... +. . .++ ++++|++.+| +.++|+.|||||+|||++.+. .|+.||+.+|.+|.++|.+
T Consensus 236 ~~~~~-~~-~-~g~~~~~~G~I~vd-~~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~ 301 (304)
T 4fk1_A 236 RPNQF-IE-Q-LGCELQSNGTFVID-DFGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDITD 301 (304)
T ss_dssp CSSCH-HH-H-TTCCCCTTSSSCSS-TTCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChh-hh-h-cCeEECCCCCEEEC-cCCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 76644 33 3 666 8899999999 677899999999999986432 7889999999999998865
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=285.82 Aligned_cols=292 Identities=17% Similarity=0.216 Sum_probs=222.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC----CCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE----DCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
.+||+|||||++|+++|+.|++.|.+|+|||+. ...||.|.... ....++ .++......+
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~----------~~~~~~------~~~~~~~~~~ 85 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT----------EIENFP------GFPDGLTGSE 85 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSS----------EECCST------TCTTCEEHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccch----------hhcccC------CCcccCCHHH
Confidence 489999999999999999999999999999994 46777665321 011111 1133456789
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
+..++.+.++++++++++++ |.+++.+. +.|.+.+.... +...+.||+||+|+|+.|..|.++|.+.+.+..++.
T Consensus 86 ~~~~~~~~~~~~gv~i~~~~-v~~i~~~~--~~~~v~~~~~~--~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~ 160 (338)
T 3itj_A 86 LMDRMREQSTKFGTEIITET-VSKVDLSS--KPFKLWTEFNE--DAEPVTTDAIILATGASAKRMHLPGEETYWQKGISA 160 (338)
T ss_dssp HHHHHHHHHHHTTCEEECSC-EEEEECSS--SSEEEEETTCS--SSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEES
T ss_pred HHHHHHHHHHHcCCEEEEeE-EEEEEEcC--CEEEEEEEecC--CCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEE
Confidence 99999999999999999888 98888765 66767663111 115689999999999999998898876544444554
Q ss_pred CCCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhh
Q 035902 159 SKYENGG--KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKM 236 (381)
Q Consensus 159 ~~~~~~~--~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (381)
....... ...+++++|||+|.+|+|+|..|.+.+.+|+++.|.+ .+.+.
T Consensus 161 ~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~-~~~~~---------------------------- 211 (338)
T 3itj_A 161 CAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKD-HLRAS---------------------------- 211 (338)
T ss_dssp CHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS-SCCSC----------------------------
T ss_pred chhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-ccCCC----------------------------
Confidence 4333322 4468999999999999999999999999999999988 33221
Q ss_pred hhcCccccCCCCCCCCCcccccccCCCccccchhhhhhc-CCCeEEccC--cceEeCCe-----EEEcC-----CcEeec
Q 035902 237 KFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIR-KGEIQVFPS--ITSINRNE-----VEFEN-----GKIEEF 303 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--v~~v~~~~-----v~~~~-----g~~~~~ 303 (381)
..+.+.+. ..+|+++.+ +.++..+. +.+++ ++++++
T Consensus 212 -------------------------------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~ 260 (338)
T 3itj_A 212 -------------------------------TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPV 260 (338)
T ss_dssp -------------------------------HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEEC
T ss_pred -------------------------------HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEe
Confidence 11133333 348999887 88887652 77766 468999
Q ss_pred cEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-c---CccHHHHHHHHHhhhcccc
Q 035902 304 EAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-H---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 304 D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-~---~a~~~a~~~a~~i~~~l~~ 378 (381)
|.||+|+|++|+.. ++. . ++ ++++|++.++.....++.||||++|||+... . .|+.+|+.+|.+|...|++
T Consensus 261 D~vi~a~G~~p~~~-~~~-~--~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 336 (338)
T 3itj_A 261 SGLFYAIGHTPATK-IVA-G--QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTS 336 (338)
T ss_dssp SEEEECSCEEECCG-GGB-T--TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCChh-Hhh-C--ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHhc
Confidence 99999999999984 444 2 55 7789999975466778999999999999642 2 8899999999999999876
Q ss_pred C
Q 035902 379 H 379 (381)
Q Consensus 379 ~ 379 (381)
.
T Consensus 337 ~ 337 (338)
T 3itj_A 337 L 337 (338)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=281.75 Aligned_cols=296 Identities=18% Similarity=0.206 Sum_probs=221.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+++||+|||||++|+++|+.|++.|.+|+|||+++.+||.|... ++... ++..+.+ + .....++.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~------~~~~~~~------~-~~~~~~~~~ 69 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL-YPEKY------IYDVAGF------P-KVYAKDLVK 69 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT-CTTSE------ECCSTTC------S-SEEHHHHHH
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc-CCCce------eeccCCC------C-CCCHHHHHH
Confidence 35899999999999999999999999999999999888876432 11111 0111111 1 124577888
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC---CCCCCCCCCCCCCcceeec
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN---GLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~---~~~~~~~g~~~~~~~~~~~ 158 (381)
++.+.++++++.++++++|..++.++ +.|.|.+.++ ..+.||+||+|||+. |..|+++|.+.+.+..++.
T Consensus 70 ~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~ 142 (335)
T 2zbw_A 70 GLVEQVAPFNPVYSLGERAETLEREG--DLFKVTTSQG-----NAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYY 142 (335)
T ss_dssp HHHHHHGGGCCEEEESCCEEEEEEET--TEEEEEETTS-----CEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEES
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEECC--CEEEEEECCC-----CEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEE
Confidence 88888888899988999999998875 4677877655 579999999999994 7777888876655433332
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhh
Q 035902 159 SKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238 (381)
Q Consensus 159 ~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 238 (381)
. +.+...+.+++++|||+|.+|+|+|..|.+.+.+|+++.|++ .+.+.. +..
T Consensus 143 ~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~-~~~~~~--~~~------------------------ 194 (335)
T 2zbw_A 143 A-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP-QFRAHE--ASV------------------------ 194 (335)
T ss_dssp S-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS-SCCSCH--HHH------------------------
T ss_pred e-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC-ccCccH--HHH------------------------
Confidence 2 223334468999999999999999999999999999999988 443321 111
Q ss_pred cCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEc---CC--cEeeccEEE
Q 035902 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFE---NG--KIEEFEAII 307 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~---~g--~~~~~D~vi 307 (381)
..+.+.+++.+|+++.+ +.++..+ .+.++ +| +++++|.||
T Consensus 195 -----------------------------~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 245 (335)
T 2zbw_A 195 -----------------------------KELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVL 245 (335)
T ss_dssp -----------------------------HHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred -----------------------------HHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEE
Confidence 11234456678888887 7777654 57776 67 579999999
Q ss_pred EecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc---c---CccHHHHHHHHHhhhccccC
Q 035902 308 FATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL---H---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~---~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
+|+|++|+++ ++. . .++-..+|++.+| +..+++.||||++|||...+ . .|..||..+|++|.+.+...
T Consensus 246 ~a~G~~p~~~-~l~-~-~~~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 319 (335)
T 2zbw_A 246 ILAGYITKLG-PLA-N-WGLALEKNKIKVD-TTMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYANPA 319 (335)
T ss_dssp ECCCEEEECG-GGG-G-SCCCEETTEEECC-TTCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred EeecCCCCch-Hhh-h-cceeccCCeeeeC-CCCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHhhhh
Confidence 9999999985 343 3 5552237889998 46678999999999998532 1 78899999999999988654
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=279.31 Aligned_cols=293 Identities=17% Similarity=0.207 Sum_probs=222.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEE-EecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNII-LEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~l-ie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
.+||+|||||++|+++|..|++.|.+|+| +|+ +.+||.|..... +..++ .++...+..++..
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~----------~~~~~------~~~~~~~~~~~~~ 66 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSE----------IENYP------GVAQVMDGISFMA 66 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSC----------BCCST------TCCSCBCHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeece----------eccCC------CCCCCCCHHHHHH
Confidence 48999999999999999999999999999 999 567776643210 00111 1123456789999
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
++.+.+++++++++++ +|.++ .++..+.|.+.+..+ . .+.||+||+|||+.|..|.++|.+.+.+..++....
T Consensus 67 ~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~----~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 139 (315)
T 3r9u_A 67 PWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGG----K-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCAT 139 (315)
T ss_dssp HHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTS----C-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHH
T ss_pred HHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecC----C-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeec
Confidence 9999999999998887 78888 554225566544433 2 799999999999999999999988776666666655
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCc
Q 035902 162 ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNL 241 (381)
Q Consensus 162 ~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (381)
.......+++++|+|+|.+|+|+|..|.+.+.+|+++.|.+ .+... ..
T Consensus 140 ~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~-~~~~~--~~----------------------------- 187 (315)
T 3r9u_A 140 CDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRD-EFRAA--PS----------------------------- 187 (315)
T ss_dssp HHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSS-SCBSC--HH-----------------------------
T ss_pred ccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCC-CCCCC--HH-----------------------------
Confidence 54455578999999999999999999999999999999887 32110 00
Q ss_pred cccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEc--CCc--EeeccEEEEec
Q 035902 242 FKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFE--NGK--IEEFEAIIFAT 310 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~--~g~--~~~~D~vi~a~ 310 (381)
...+.+++.+|+++.+ +.++..+ ++.+. +|+ ++++|.+|+|+
T Consensus 188 ---------------------------~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~ 240 (315)
T 3r9u_A 188 ---------------------------TVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFV 240 (315)
T ss_dssp ---------------------------HHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECS
T ss_pred ---------------------------HHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEE
Confidence 0122335678998877 7777654 26666 775 79999999999
Q ss_pred CCCCCcchhccccCCc-c-cccCCCCCCCCCCCCCCCCcEEEEeccccc-cc---CccHHHHHHHHHhhhccccC
Q 035902 311 GYKSTVRNWLKRADKD-F-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-LH---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 311 G~~p~~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-~~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
|++|+...+...+..+ + ++++|++.+| +..+++.||||++|||++. +. .|+.||+.+|.+|...|++.
T Consensus 241 G~~p~~~~~~~~~~~g~l~~~~~g~i~vd-~~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 314 (315)
T 3r9u_A 241 GLNVRNEILKQDDSKFLCNMEEGGQVSVD-LKMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESL 314 (315)
T ss_dssp CEEECCGGGBCTTSCBSSCBCTTSCBCCC-TTCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCchhhhcccccceeeecCCCcEEeC-CCcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHHHhc
Confidence 9999985332102233 5 6788999999 4677899999999999753 22 89999999999999988754
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=275.70 Aligned_cols=290 Identities=19% Similarity=0.198 Sum_probs=218.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+|||||++|+++|..|++.|.+|+|||+ ..||.|.... ..+.+. . ..+....++.++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~-------------~~~~~~---~-~~~~~~~~~~~~ 61 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTV-------------DIENYI---S-VPKTEGQKLAGA 61 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCC-------------EECCBT---T-BSSEEHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecccc-------------cccccc---C-cCCCCHHHHHHH
Confidence 37999999999999999999999999999986 3566664310 001110 0 112356788899
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCC-CCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDEN-AKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
+.+.+++++++++.+++|..++.+.. .+.|.+.+.++ ..+.||+||+|||+.|..|.+||.+.+.+..++.+..
T Consensus 62 ~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g-----~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~ 136 (310)
T 1fl2_A 62 LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASG-----AVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPH 136 (310)
T ss_dssp HHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTS-----CEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHH
T ss_pred HHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCC-----CEEEeCEEEECcCCCcCCCCCCChhhcccceeEEecc
Confidence 99999989999999999999986532 23677887765 5799999999999998888899887665444554433
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCc
Q 035902 162 ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNL 241 (381)
Q Consensus 162 ~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (381)
.......+++++|||+|.+|+|+|..|++.+.+|+++.|.+. +. .+
T Consensus 137 ~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~~--~~------------------------------- 182 (310)
T 1fl2_A 137 CDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-MK--AD------------------------------- 182 (310)
T ss_dssp HHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS-CC--SC-------------------------------
T ss_pred CcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc-cC--cc-------------------------------
Confidence 323334689999999999999999999999999999998872 21 00
Q ss_pred cccCCCCCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeCC-----eEEEcC---Cc--EeeccEEEE
Q 035902 242 FKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINRN-----EVEFEN---GK--IEEFEAIIF 308 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~~-----~v~~~~---g~--~~~~D~vi~ 308 (381)
..+.+.+++ .+++++.+ ++++..+ ++.+.+ |+ ++++|.|++
T Consensus 183 --------------------------~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~ 236 (310)
T 1fl2_A 183 --------------------------QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFV 236 (310)
T ss_dssp --------------------------HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred --------------------------HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEE
Confidence 011233444 58888887 7777654 466654 53 689999999
Q ss_pred ecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccccCC
Q 035902 309 ATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~~~ 380 (381)
|+|++|+++ ++. . .-.++++|++.+| +.++++.||||++|||.+.+. .|+.||+.+|.+|...|....
T Consensus 237 a~G~~p~~~-~l~-~-~l~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 308 (310)
T 1fl2_A 237 QIGLLPNTN-WLE-G-AVERNRMGEIIID-AKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTK 308 (310)
T ss_dssp CSCEEESCG-GGT-T-TSCBCTTSCBCCC-TTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred eeCCccCch-HHh-c-cccccCCCcEEcC-CCCccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHHHHhc
Confidence 999999985 444 3 2226778999999 456789999999999988652 789999999999999886653
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=275.90 Aligned_cols=286 Identities=21% Similarity=0.275 Sum_probs=212.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+|||||++|+++|..|++.|.+|+|||+. ..||.|..... ...++.+ ......++.++
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~~-------~~~~~~~~~~~ 77 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPL----------VENYLGF-------KSIVGSELAKL 77 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGGGGGCSC----------BCCBTTB-------SSBCHHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCccccccch----------hhhcCCC-------cccCHHHHHHH
Confidence 489999999999999999999999999999995 56665432100 0011111 12456678888
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.+++++++++. .++.+++.++ +.|.|.+ ++ ..+.||+||+|+|+.|..|.++|.+.+.+..++.....
T Consensus 78 ~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~~-~~-----~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~ 148 (319)
T 3cty_A 78 FADHAANYAKIREG-VEVRSIKKTQ--GGFDIET-ND-----DTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTC 148 (319)
T ss_dssp HHHHHHTTSEEEET-CCEEEEEEET--TEEEEEE-SS-----SEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHH
T ss_pred HHHHHHHcCCEEEE-eeEEEEEEeC--CEEEEEE-CC-----CEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEec
Confidence 88888888888777 6899998765 5666766 33 46899999999999998888888765543334433222
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+.....+++++|||+|.+|+|+|..|.+.+.+|+++.|.+ .+.+.
T Consensus 149 ~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~-~~~~~---------------------------------- 193 (319)
T 3cty_A 149 DGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP-KYMCE---------------------------------- 193 (319)
T ss_dssp HGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSS-SCCSC----------------------------------
T ss_pred chhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC-ccCCC----------------------------------
Confidence 2233467999999999999999999999999999999887 22110
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEc---CCc--EeeccEEEEec
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFE---NGK--IEEFEAIIFAT 310 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~---~g~--~~~~D~vi~a~ 310 (381)
..+.+.+++.+++++.+ ++++..+ ++.+. +|+ ++++|.||+|+
T Consensus 194 -------------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~ 248 (319)
T 3cty_A 194 -------------------------NAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYV 248 (319)
T ss_dssp -------------------------HHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECC
T ss_pred -------------------------HHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEee
Confidence 01123334567777776 7777643 36665 565 68999999999
Q ss_pred CCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-c---CccHHHHHHHHHhhhccccC
Q 035902 311 GYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-H---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 311 G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
|++|+++ ++. . .++ ++++|++.+| +.++++.||||++|||++.+ . .|..||+.+|.+|...|.+.
T Consensus 249 G~~p~~~-~l~-~-~gl~~~~~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 318 (319)
T 3cty_A 249 GLIPQTS-FLK-D-SGVKLDERGYIVVD-SRQRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSISK 318 (319)
T ss_dssp CEEECCG-GGT-T-SCCCBCTTSCBCCC-TTCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCccChH-HHh-h-ccccccCCccEeCC-CCCccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999985 343 3 555 6788999999 45778999999999998763 2 79999999999999988754
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=278.30 Aligned_cols=288 Identities=16% Similarity=0.221 Sum_probs=214.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEec----CCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILER----EDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
++||+|||||++|+++|+.|++.|.+|+|||+ ....++.|.... ....++. ++......+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~----------~~~~~~~------~~~~~~~~~ 71 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTT----------DVENFPG------FPEGILGVE 71 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCS----------EECCSTT------CTTCEEHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeecc----------ccccCCC------CccCCCHHH
Confidence 47999999999999999999999999999998 444555433210 0001111 122234678
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCC----CCcc
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGS----FEGE 154 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~----~~~~ 154 (381)
+.+++.+.+++.+++++.++ |.+++... +.|.|.+ ++ ..++||+||+|||++|..|.+||.+. +.+.
T Consensus 72 ~~~~l~~~~~~~gv~~~~~~-v~~i~~~~--~~~~v~~-~~-----~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~ 142 (333)
T 1vdc_A 72 LTDKFRKQSERFGTTIFTET-VTKVDFSS--KPFKLFT-DS-----KAILADAVILAIGAVAKRLSFVGSGEVLGGFWNR 142 (333)
T ss_dssp HHHHHHHHHHHTTCEEECCC-CCEEECSS--SSEEEEC-SS-----EEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTT
T ss_pred HHHHHHHHHHHCCCEEEEeE-EEEEEEcC--CEEEEEE-CC-----cEEEcCEEEECCCCCcCCCCCCCccccccccccC
Confidence 88889888888899988876 88887754 5677776 44 67999999999999998888888765 4333
Q ss_pred eeecCCCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 155 YMHSSKYENGGK--FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 155 ~~~~~~~~~~~~--~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
.++......... ..+++++|||+|.+|+|+|..|.+.+.+|+++.|++ .+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~-~~~~~------------------------ 197 (333)
T 1vdc_A 143 GISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD-AFRAS------------------------ 197 (333)
T ss_dssp TEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS-SCCSC------------------------
T ss_pred cEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCC-cCCcc------------------------
Confidence 444433222222 468999999999999999999999999999999987 32110
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhh-hhhcCCCeEEccC--cceEeCCe-------EEEc---CC-
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAM-DKIRKGEIQVFPS--ITSINRNE-------VEFE---NG- 298 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~--v~~v~~~~-------v~~~---~g- 298 (381)
..+. +.+++.+|+++.+ +.++..+. +.+. +|
T Consensus 198 -----------------------------------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~ 242 (333)
T 1vdc_A 198 -----------------------------------KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGD 242 (333)
T ss_dssp -----------------------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCC
T ss_pred -----------------------------------HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCc
Confidence 0011 2335678998877 77876542 6665 35
Q ss_pred -cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHh
Q 035902 299 -KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDI 372 (381)
Q Consensus 299 -~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i 372 (381)
+++++|.||+|+|++|+.+ ++. .++ ++++|++.+|....+++.||||++|||.+.+. .|..+|+.+|.+|
T Consensus 243 ~~~i~~D~vi~a~G~~p~~~-~~~---~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i 318 (333)
T 1vdc_A 243 VSDLKVSGLFFAIGHEPATK-FLD---GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDA 318 (333)
T ss_dssp EEEEECSEEEECSCEEESCG-GGT---TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHH
T ss_pred eEEEecCEEEEEeCCccchH-Hhh---ccccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHH
Confidence 5789999999999999985 333 344 67789999984345789999999999987632 7899999999999
Q ss_pred hhccccC
Q 035902 373 NLALTDH 379 (381)
Q Consensus 373 ~~~l~~~ 379 (381)
...|.+.
T Consensus 319 ~~~l~~~ 325 (333)
T 1vdc_A 319 EHYLQEI 325 (333)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9988653
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=277.25 Aligned_cols=310 Identities=20% Similarity=0.268 Sum_probs=216.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecC---CcccccCCCCC--CCC-----
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLA---KQFCELPHMPF--PSR----- 69 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~----- 69 (381)
|+++||+|||||++|+++|..|++.|. +|+|||++. +|+.|...... .....+ ...+++..+.. +..
T Consensus 2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (369)
T 3d1c_A 2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKS-TRTITPSFTSNGFGMPDMNAISMDTSPAFT 79 (369)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTT-CBCSSCCCCCGGGTCCCTTCSSTTCCHHHH
T ss_pred CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccc-ccccCcchhcccCCchhhhhcccccccccc
Confidence 777999999999999999999999999 999999998 88876532111 111011 11111111110 000
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 70 -TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
...++.+.++.+++.+++++++++++++++|++++.++ +.|.|.+.++ .+.||+||+|||+.+. |.+|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g------~~~~d~vVlAtG~~~~-p~ip~- 149 (369)
T 3d1c_A 80 FNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADD--AYYTIATTTE------TYHADYIFVATGDYNF-PKKPF- 149 (369)
T ss_dssp HCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSEEEEESSC------CEEEEEEEECCCSTTS-BCCCS-
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECC--CeEEEEeCCC------EEEeCEEEECCCCCCc-cCCCC-
Confidence 02245667888999999999999999999999998865 4677876543 4899999999999865 55665
Q ss_pred CCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHH
Q 035902 149 GSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~ 227 (381)
+..+++..+.....+.+++++|||+|.+|+|+|..|.+.|.+|+++.|++ .+++. .+.+. .++
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~-~~~~~~~d~~~------~~~----- 213 (369)
T 3d1c_A 150 ----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT-GLNDPDADPSV------RLS----- 213 (369)
T ss_dssp ----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----------CTT------SCC-----
T ss_pred ----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCC-CCCCCCCCCCc------cCC-----
Confidence 23567766665555677899999999999999999999999999999988 44321 11100 001
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCC-eEEccC--cceE--eCC--eEEEcCCcE
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGE-IQVFPS--ITSI--NRN--EVEFENGKI 300 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~--v~~v--~~~--~v~~~~g~~ 300 (381)
+.....+.+.+++.+ ++++.+ |.++ +++ .+.+.+|+.
T Consensus 214 ------------------------------------~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~ 257 (369)
T 3d1c_A 214 ------------------------------------PYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQS 257 (369)
T ss_dssp ------------------------------------HHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCC
T ss_pred ------------------------------------HHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeE
Confidence 011122344556675 999887 8888 444 467788876
Q ss_pred ee-ccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc-------CccHHHHHHHHHh
Q 035902 301 EE-FEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH-------GISIDAKNIANDI 372 (381)
Q Consensus 301 ~~-~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~-------~a~~~a~~~a~~i 372 (381)
+. +|.+|+|+|++|+++.+.. .++-+++|++.++.....++.||||++||++.... .+..||+.+|++|
T Consensus 258 ~~~~d~vi~a~G~~~~~~~~~~---~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l 334 (369)
T 3d1c_A 258 VHTPHEPILATGFDATKNPIVQ---QLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLL 334 (369)
T ss_dssp EEESSCCEECCCBCGGGSHHHH---HHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHH
T ss_pred eccCCceEEeeccCCccchhhh---hhccCCCCCEEechhhcccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHH
Confidence 65 6999999999999854433 22336788899984446688999999999976533 4567899999999
Q ss_pred hhccc
Q 035902 373 NLALT 377 (381)
Q Consensus 373 ~~~l~ 377 (381)
.+.+.
T Consensus 335 ~~~~~ 339 (369)
T 3d1c_A 335 TQREG 339 (369)
T ss_dssp HHHTT
T ss_pred hcccC
Confidence 87653
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=277.97 Aligned_cols=292 Identities=15% Similarity=0.241 Sum_probs=215.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
|+++||+|||||++|+++|..|++.|.+|+|||+. ..|+.|..... ...++. ++......++.
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~------~~~~~~~~~~~ 65 (320)
T 1trb_A 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE----------VENWPG------DPNDLTGPLLM 65 (320)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSB----------CCCSTT------CCSSCBHHHHH
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchh----------hhhCCC------CCCCCCHHHHH
Confidence 34689999999999999999999999999999975 56665432110 001111 12234567888
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~ 160 (381)
+++.+.+++++++++.++ +..++... +.|.+ +.++ ..+.||+||+|||+.|..|.++|.+.+.+..++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~-v~~i~~~~--~~~~v-~~~~-----~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~ 136 (320)
T 1trb_A 66 ERMHEHATKFETEIIFDH-INKVDLQN--RPFRL-NGDN-----GEYTCDALIIATGASARYLGLPSEEAFKGRGVSACA 136 (320)
T ss_dssp HHHHHHHHHTTCEEECCC-EEEEECSS--SSEEE-EESS-----CEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCH
T ss_pred HHHHHHHHHCCCEEEEee-eeEEEecC--CEEEE-EeCC-----CEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecc
Confidence 899888999999988876 88887754 56766 5544 579999999999999888888876544433444433
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcC
Q 035902 161 YENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGN 240 (381)
Q Consensus 161 ~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (381)
..+.....+++++|||+|.+|+|+|..|.+.+.+|+++.|.+ .+.+. ..+
T Consensus 137 ~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~~--~~~--------------------------- 186 (320)
T 1trb_A 137 TSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD-GFRAE--KIL--------------------------- 186 (320)
T ss_dssp HHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS-SCCCC--HHH---------------------------
T ss_pred cCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC-ccccC--HHH---------------------------
Confidence 333333468999999999999999999999999999999987 33211 000
Q ss_pred ccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe-----EEEcC----C--cEeeccEEE
Q 035902 241 LFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE-----VEFEN----G--KIEEFEAII 307 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~-----v~~~~----g--~~~~~D~vi 307 (381)
...+.+.+++.+|+++.+ ++++..+. +.+++ | +++++|.||
T Consensus 187 --------------------------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv 240 (320)
T 1trb_A 187 --------------------------IKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 240 (320)
T ss_dssp --------------------------HHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEE
T ss_pred --------------------------HHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEE
Confidence 011244456788999887 88886543 77764 4 579999999
Q ss_pred EecCCCCCcchhccccCCcc-cccCCCCCCCCCC----CCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 308 FATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPN----HWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~----~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+|+|++|+++ ++. .++ ++ +|++.++... ..++.||||++|||.+.+. .|..+|..+|.+|...|.+
T Consensus 241 ~a~G~~p~~~-~~~---~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 315 (320)
T 1trb_A 241 VAIGHSPNTA-IFE---GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 315 (320)
T ss_dssp ECSCEEESCG-GGT---TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEeCCCCChH-Hhc---cccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHHh
Confidence 9999999985 333 234 56 8999998321 3688999999999988632 7899999999999999865
Q ss_pred C
Q 035902 379 H 379 (381)
Q Consensus 379 ~ 379 (381)
.
T Consensus 316 ~ 316 (320)
T 1trb_A 316 L 316 (320)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=279.00 Aligned_cols=296 Identities=17% Similarity=0.207 Sum_probs=219.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+.+||+|||||++|+++|+.|++.|.+|+|||+.+.+||.|... ++... .+..+.+ + .....++.+
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~------~~~~~~~------~-~~~~~~~~~ 78 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL-YPEKH------IYDVAGF------P-EVPAIDLVE 78 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT-CTTSE------ECCSTTC------S-SEEHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc-CCCcc------cccCCCC------C-CCCHHHHHH
Confidence 35899999999999999999999999999999998888866422 11110 0111111 1 124578888
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC---CCCCCCCC-CCCCCcceee
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN---GLIPEVPG-LGSFEGEYMH 157 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~---~~~~~~~g-~~~~~~~~~~ 157 (381)
++.+.++++++.++++++|+.++..+ .+.|.|.+.++ ..+.||+||+|||+. |..+.++| .+.+.+..++
T Consensus 79 ~l~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~ 152 (360)
T 3ab1_A 79 SLWAQAERYNPDVVLNETVTKYTKLD-DGTFETRTNTG-----NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVY 152 (360)
T ss_dssp HHHHHHHTTCCEEECSCCEEEEEECT-TSCEEEEETTS-----CEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEE
T ss_pred HHHHHHHHhCCEEEcCCEEEEEEECC-CceEEEEECCC-----cEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEE
Confidence 88888888899999999999998864 23677887665 579999999999994 66667777 6555543333
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhh
Q 035902 158 SSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMK 237 (381)
Q Consensus 158 ~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (381)
.. +.+...+.+++++|||+|.+|+|+|..|.+.+.+|+++.|++ .+.+... ..
T Consensus 153 ~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~-~~~~~~~------~~------------------- 205 (360)
T 3ab1_A 153 YA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH-EFQGHGK------TA------------------- 205 (360)
T ss_dssp SS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS-SCSSCSH------HH-------------------
T ss_pred Ee-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-CCCCCHH------HH-------------------
Confidence 32 233334568999999999999999999999999999999987 3322210 00
Q ss_pred hcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEc--CC--cEeeccEE
Q 035902 238 FGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFE--NG--KIEEFEAI 306 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~--~g--~~~~~D~v 306 (381)
..+.+..++.+++++.+ +.++..+ ++.+. +| +++++|.|
T Consensus 206 ------------------------------~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~v 255 (360)
T 3ab1_A 206 ------------------------------HEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRL 255 (360)
T ss_dssp ------------------------------HSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEE
T ss_pred ------------------------------HHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEE
Confidence 11234445678888887 7777653 56664 77 57999999
Q ss_pred EEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc---c---CccHHHHHHHHHhhhccccC
Q 035902 307 IFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL---H---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 307 i~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~---~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
|+|+|++|+.+ ++. . .++ ++ +|++.+| +..+++.||||++|||...+ . .|..||..+|++|.+.+...
T Consensus 256 i~a~G~~p~~~-~l~-~-~~~~~~-~g~i~vd-~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 330 (360)
T 3ab1_A 256 LILIGFKSNLG-PLA-R-WDLELY-ENALVVD-SHMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIKPG 330 (360)
T ss_dssp EECCCBCCSCG-GGG-G-SSCCEE-TTEEECC-TTSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCCCCHH-HHH-h-hccccc-cCeeeec-CCCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhcCCc
Confidence 99999999985 344 3 555 44 7889998 46678999999999998532 2 78899999999999887653
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=278.15 Aligned_cols=286 Identities=17% Similarity=0.213 Sum_probs=214.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+|||||++|+++|..|++.|.+|+|||+. ..||.|..... ...++.+ +......++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~----------~~~~~~~------~~~~~~~~~~~~ 76 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTD----------VENYPGF------RNGITGPELMDE 76 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSC----------BCCSTTC------TTCBCHHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccch----------hhhcCCC------CCCCCHHHHHHH
Confidence 489999999999999999999999999999976 56665533210 0011111 222456788899
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEE-EEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWII-VAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
+.+.++++++++++++ +.+++. . +.|.| .+.++ ..+.||+||+|||+.|..|.++|.+.+.+..++....
T Consensus 77 l~~~~~~~~v~~~~~~-v~~i~~-~--~~~~v~~~~~g-----~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~ 147 (335)
T 2a87_A 77 MREQALRFGADLRMED-VESVSL-H--GPLKSVVTADG-----QTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCAT 147 (335)
T ss_dssp HHHHHHHTTCEEECCC-EEEEEC-S--SSSEEEEETTS-----CEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHH
T ss_pred HHHHHHHcCCEEEEee-EEEEEe-C--CcEEEEEeCCC-----CEEEeCEEEECCCCCccCCCCCchHhccCCceEEeec
Confidence 9988998999988876 888876 3 45667 66554 5799999999999999888888865544444544333
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCc
Q 035902 162 ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNL 241 (381)
Q Consensus 162 ~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+.....+++++|||+|.+|+|+|..|++.+.+|+++.|++ .+.+.
T Consensus 148 ~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~-~~~~~--------------------------------- 193 (335)
T 2a87_A 148 CDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD-EFRAS--------------------------------- 193 (335)
T ss_dssp HHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSS-SCSSC---------------------------------
T ss_pred cchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCC-cCCcc---------------------------------
Confidence 22223468999999999999999999999999999999887 22110
Q ss_pred cccCCCCCCCCCcccccccCCCccccchhh-hhhcCCCeEEccC--cceEeCCe----EEEc---CC--cEeeccEEEEe
Q 035902 242 FKYGLERPKKGPFYFKAITGQTPTIDVGAM-DKIRKGEIQVFPS--ITSINRNE----VEFE---NG--KIEEFEAIIFA 309 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~--v~~v~~~~----v~~~---~g--~~~~~D~vi~a 309 (381)
..+. +.+++.+|+++.+ +.++..+. +.++ +| +++++|.||+|
T Consensus 194 --------------------------~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a 247 (335)
T 2a87_A 194 --------------------------KIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVA 247 (335)
T ss_dssp --------------------------TTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEEC
T ss_pred --------------------------HHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEc
Confidence 0012 2335678999887 88887653 7665 35 57999999999
Q ss_pred cCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 310 TGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+|++|+++ ++. .++ ++++|++.+|.....++.||||++|||.+... .|..+|+.+|.+|...|..
T Consensus 248 ~G~~p~~~-~~~---~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l~~ 317 (335)
T 2a87_A 248 IGHEPRSG-LVR---EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAE 317 (335)
T ss_dssp SCEEECCT-TTB---TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccChh-Hhh---cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHhhc
Confidence 99999985 333 344 67789999994345789999999999987632 7889999999999988754
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=292.99 Aligned_cols=291 Identities=19% Similarity=0.220 Sum_probs=208.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
.+|+|||||+||++||..|++.|. +|+|||+++..+.. ....+.. ................
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~--~~~l~~~----------~~~~~~~~~~~~~~~~----- 63 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFA--NCALPYV----------IGEVVEDRRYALAYTP----- 63 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBC--GGGHHHH----------HTTSSCCGGGTBCCCH-----
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCC--cchhHHH----------HcCCccchhhhhhcCH-----
Confidence 379999999999999999999874 79999998754321 0000000 0000000000001111
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
+++.++.+++++.+++|+.++... +. +....+...+..++.||+||||||+.|..|.++|...+..+.......
T Consensus 64 --~~~~~~~~i~~~~~~~V~~id~~~--~~--~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~ 137 (437)
T 4eqs_A 64 --EKFYDRKQITVKTYHEVIAINDER--QT--VSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDA 137 (437)
T ss_dssp --HHHHHHHCCEEEETEEEEEEETTT--TE--EEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHH
T ss_pred --HHHHHhcCCEEEeCCeEEEEEccC--cE--EEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHH
Confidence 234556799999999999998765 54 555554444557899999999999999988887744321111100000
Q ss_pred CCC--CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 162 ENG--GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 162 ~~~--~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
... ....+++++|||+|.+|+|+|..++++|.+|+++.|.+ .++|..+.+....+
T Consensus 138 l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~ll~~~d~~~~~~~---------------------- 194 (437)
T 4eqs_A 138 IDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQPI---------------------- 194 (437)
T ss_dssp HHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS-CCSTTSCGGGGHHH----------------------
T ss_pred HHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeec-cccccccchhHHHH----------------------
Confidence 000 01247899999999999999999999999999999998 67776655444433
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEcCCcEeeccEEEEecCCCCCcc
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
.+.+++.+|+++.+ |++++++.+.+++|+++++|.+++|+|++||++
T Consensus 195 -------------------------------~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~~ 243 (437)
T 4eqs_A 195 -------------------------------LDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSK 243 (437)
T ss_dssp -------------------------------HHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEESCG
T ss_pred -------------------------------HHHhhccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecCcH
Confidence 34446677888877 899999999999999999999999999999985
Q ss_pred hhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc-------------CccHHHHHHHHHhhhc
Q 035902 318 NWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH-------------GISIDAKNIANDINLA 375 (381)
Q Consensus 318 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~-------------~a~~~a~~~a~~i~~~ 375 (381)
++. . .++ ++++|++.+| +.++|+.|||||+|||+..++ .|..||+.+|+||.+.
T Consensus 244 -~~~-~-~gl~~~~~G~I~vd-~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~ 311 (437)
T 4eqs_A 244 -FIE-S-SNIKLDRKGFIPVN-DKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 311 (437)
T ss_dssp -GGT-T-SSCCCCTTSCEECC-TTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSC
T ss_pred -HHH-h-hhhhhccCCcEecC-CCccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCC
Confidence 343 3 666 7889999999 577899999999999976431 6789999999999874
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=281.93 Aligned_cols=289 Identities=18% Similarity=0.206 Sum_probs=222.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+||||||||+++|..|++.|.+|+|+|+ ..||.|.... ....+... ......++.++
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~----------~~~~~~~~-------~~~~~~~l~~~ 272 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTV----------DIENYISV-------PKTEGQKLAGA 272 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCS----------CBCCBTTB-------SSBCHHHHHHH
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccccc----------cccccCCC-------CCCCHHHHHHH
Confidence 58999999999999999999999999999986 4666664321 00001111 12456788899
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCC-CCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDEN-AKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
+.+.+++++++++.+++|.+++.+.. .+.|.|.+.++ ..++||+||+|||+.|..|.+||.+.+.+..++.+..
T Consensus 273 l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g-----~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~ 347 (521)
T 1hyu_A 273 LKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASG-----AVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPH 347 (521)
T ss_dssp HHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTS-----CEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTT
T ss_pred HHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCC-----CEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeec
Confidence 99999999999999999999986432 24678888765 5799999999999998888899987766555666655
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCc
Q 035902 162 ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNL 241 (381)
Q Consensus 162 ~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+...+.+++++|||+|.+|+|+|..|+..+.+|+++.|.+ .+.+.
T Consensus 348 ~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~-~l~~~--------------------------------- 393 (521)
T 1hyu_A 348 CDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP-EMKAD--------------------------------- 393 (521)
T ss_dssp CCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSS-SCCSC---------------------------------
T ss_pred CchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCc-ccCcC---------------------------------
Confidence 54445578999999999999999999999999999999887 33211
Q ss_pred cccCCCCCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeCC-----eEEEcC---Cc--EeeccEEEE
Q 035902 242 FKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINRN-----EVEFEN---GK--IEEFEAIIF 308 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~~-----~v~~~~---g~--~~~~D~vi~ 308 (381)
..+.+.+++ .+|+++.+ ++++.++ ++.+.+ |+ ++++|.|++
T Consensus 394 --------------------------~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~ 447 (521)
T 1hyu_A 394 --------------------------QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFV 447 (521)
T ss_dssp --------------------------HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred --------------------------HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEE
Confidence 011333444 58899888 8888753 356653 53 689999999
Q ss_pred ecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccccC
Q 035902 309 ATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~~ 379 (381)
++|++|+++ ++. . .-.++++|++.+| +..+++.|||||+|||.+.+. .|+.+|..+|.+|..+|.+.
T Consensus 448 a~G~~pn~~-~l~-~-~l~~~~~G~I~Vd-~~~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L~~~ 518 (521)
T 1hyu_A 448 QIGLLPNTH-WLE-G-ALERNRMGEIIID-AKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRT 518 (521)
T ss_dssp CCCEEESCG-GGT-T-TSCBCTTSCBCCC-TTCBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCch-HHh-h-hhccCCCCcEEeC-CCCCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHHHhh
Confidence 999999984 555 3 2226788999999 567789999999999988652 89999999999999988654
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=283.27 Aligned_cols=299 Identities=13% Similarity=0.170 Sum_probs=197.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+.+||+|||||++|+++|..|++. |.+|+|||+++.++ |.....+... . . ...... ...+...+
T Consensus 1 M~~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~gl~~~~---~----g--~~~~~~--~~~~~~~~ 67 (472)
T 3iwa_A 1 MSLKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGCGIPYYV---S----G--EVSNIE--SLQATPYN 67 (472)
T ss_dssp ---CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--ccccccchhh---c----C--CCCchH--Hhccccch
Confidence 7678999999999999999999998 88999999998654 1110000000 0 0 000000 00011122
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
+..+.+.+.+++++.++++++|++++.+. +. +.+.+...++...+.||+||+|||+.|..|+++|.+. .+ +++.
T Consensus 68 ~~~~~~~~~~~~gi~~~~~~~V~~id~~~--~~--v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~-~~-v~~~ 141 (472)
T 3iwa_A 68 VVRDPEFFRINKDVEALVETRAHAIDRAA--HT--VEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDL-AG-VTPV 141 (472)
T ss_dssp -------------CEEECSEEEEEEETTT--TE--EEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTS-BT-EEEC
T ss_pred hccCHHHHhhhcCcEEEECCEEEEEECCC--CE--EEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCC-CC-EEEe
Confidence 45566666667889999999999998765 55 4444321223358999999999999999999998762 22 3333
Q ss_pred CCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhC-CCeeEEEEecCcceec-hhhHHHHHHHHhhCcHHHHHHH
Q 035902 159 SKYENG-------GKFIGKNVLVVGCGNSGMEIAYDLSSC-GACTSIVVRGPVHVLT-REIVFAGMLLLKFLPCKLVDFI 229 (381)
Q Consensus 159 ~~~~~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~-g~~v~~i~r~~~~~~p-~~~~~~~~~~~~~l~~~~~~~~ 229 (381)
....+. ....+++++|||+|.+|+|+|..+.+. |.+|+++.|.+ .++| ..+.++...+
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~l------------ 208 (472)
T 3iwa_A 142 TNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD-QIMPGFTSKSLSQML------------ 208 (472)
T ss_dssp CSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS-SSSTTTSCHHHHHHH------------
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC-cccccccCHHHHHHH------------
Confidence 221111 112479999999999999999999999 99999999998 6666 4443333332
Q ss_pred HHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC-C-e--EEEcCCcEeec
Q 035902 230 VVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR-N-E--VEFENGKIEEF 303 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~-~-~--v~~~~g~~~~~ 303 (381)
.+.+++.+++++.+ |++++. + . +.+.+|+++++
T Consensus 209 -----------------------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a 247 (472)
T 3iwa_A 209 -----------------------------------------RHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDA 247 (472)
T ss_dssp -----------------------------------------HHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEEC
T ss_pred -----------------------------------------HHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEc
Confidence 34456678888887 888765 2 2 67789999999
Q ss_pred cEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccc-------cc------cCccHHHHHHH
Q 035902 304 EAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRT-------GL------HGISIDAKNIA 369 (381)
Q Consensus 304 D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-------~~------~~a~~~a~~~a 369 (381)
|.||+|+|++|+++ ++. . .++ ++++|++.+| +.++++.||||++|||+. .+ ..|..||+.+|
T Consensus 248 D~Vv~a~G~~p~~~-l~~-~-~gl~~~~~g~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa 323 (472)
T 3iwa_A 248 DLVILAAGVSPNTQ-LAR-D-AGLELDPRGAIIVD-TRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIG 323 (472)
T ss_dssp SEEEECSCEEECCH-HHH-H-HTCCBCTTCCEECC-TTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHH
T ss_pred CEEEECCCCCcCHH-HHH-h-CCccCCCCCCEEEC-CCcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHH
Confidence 99999999999986 343 3 566 7788999999 567789999999999973 21 26889999999
Q ss_pred HHhhhcc
Q 035902 370 NDINLAL 376 (381)
Q Consensus 370 ~~i~~~l 376 (381)
++|.+.-
T Consensus 324 ~~i~g~~ 330 (472)
T 3iwa_A 324 TNLADGD 330 (472)
T ss_dssp HHHTTCC
T ss_pred HHhcCCC
Confidence 9998743
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=290.77 Aligned_cols=291 Identities=16% Similarity=0.239 Sum_probs=216.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCC-CCHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTF-VPRI 77 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 77 (381)
|+.+||+|||||+||++||..|++. |.+|+|||+++.++ |... .++... . ... ....
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~--~~~~--------------~lp~~~---~-g~~~~~~~ 93 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--FANC--------------GLPYYI---G-GVITERQK 93 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--BCGG--------------GHHHHH---T-TSSCCGGG
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc--ccCC--------------CCchhh---c-CcCCChHH
Confidence 3458999999999999999999998 88999999998654 1110 000000 0 001 1122
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
.+..+++.+.+++++.++++++|++++.+. +.+ .+.+...++...+.||+||+|||+.|..|+++|.+...+ +++
T Consensus 94 ~~~~~~~~~~~~~gi~v~~~~~V~~id~~~--~~v--~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~-v~~ 168 (588)
T 3ics_A 94 LLVQTVERMSKRFNLDIRVLSEVVKINKEE--KTI--TIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKA-LFT 168 (588)
T ss_dssp GBSSCHHHHHHHTTCEEECSEEEEEEETTT--TEE--EEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTT-EEE
T ss_pred hhccCHHHHHHhcCcEEEECCEEEEEECCC--CEE--EEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCC-eEE
Confidence 345566777788899999999999998765 554 443322223357999999999999999999999843332 444
Q ss_pred cCCCCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHH
Q 035902 158 SSKYENGG-------KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIV 230 (381)
Q Consensus 158 ~~~~~~~~-------~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 230 (381)
.....+.. ...+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+
T Consensus 169 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l------------- 234 (588)
T 3ics_A 169 LRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMAN-QVMPPIDYEMAAYV------------- 234 (588)
T ss_dssp CSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHHHHH-------------
T ss_pred eCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-cccccCCHHHHHHH-------------
Confidence 43322211 1358999999999999999999999999999999988 67776555444333
Q ss_pred HHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--CeEEEcCCcEeeccEE
Q 035902 231 VMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NEVEFENGKIEEFEAI 306 (381)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~v~~~~g~~~~~D~v 306 (381)
.+.+++.+++++.+ |++++. +++.+++|+++++|.|
T Consensus 235 ----------------------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~V 274 (588)
T 3ics_A 235 ----------------------------------------HEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDML 274 (588)
T ss_dssp ----------------------------------------HHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEE
T ss_pred ----------------------------------------HHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEE
Confidence 33446678888876 888876 5788999999999999
Q ss_pred EEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccc-------cc------cCccHHHHHHHHHh
Q 035902 307 IFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRT-------GL------HGISIDAKNIANDI 372 (381)
Q Consensus 307 i~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-------~~------~~a~~~a~~~a~~i 372 (381)
|+|+|++|+++. +. . .++ ++++|++.+| +.++++.|||||+|||+. .+ ..|..||+.+|++|
T Consensus 275 i~a~G~~p~~~~-l~-~-~g~~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 350 (588)
T 3ics_A 275 ILAIGVQPESSL-AK-G-AGLALGVRGTIKVN-EKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADII 350 (588)
T ss_dssp EECSCEEECCHH-HH-H-TTCCBCGGGCBCCC-TTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHH
T ss_pred EEccCCCCChHH-HH-h-cCceEcCCCCEEEC-CccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHh
Confidence 999999999863 43 3 666 7889999999 567789999999999983 21 16889999999999
Q ss_pred hh
Q 035902 373 NL 374 (381)
Q Consensus 373 ~~ 374 (381)
.+
T Consensus 351 ~g 352 (588)
T 3ics_A 351 HG 352 (588)
T ss_dssp TT
T ss_pred cC
Confidence 87
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=276.20 Aligned_cols=287 Identities=14% Similarity=0.105 Sum_probs=204.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+ +||+|||||+||+++|..|++. |.+|+|||+++.++.. ..... .+.. .......+
T Consensus 1 M~-~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~--~~~~~--------------~~~~----~~~~~~~~ 59 (452)
T 3oc4_A 1 MS-LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYL--SGGLS--------------AYFN----HTINELHE 59 (452)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSC--CC---------------------------------
T ss_pred CC-CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCccc--Cccch--------------hhhc----CCCCCHHH
Confidence 64 7999999999999999999998 8899999999866521 10000 0000 00001111
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
+.....+.+++++++++++++|.+++.+. +.+.+.... +...+.||+||+|||+.|..|+++|.+. ..+++.
T Consensus 60 ~~~~~~~~~~~~gi~~~~~~~V~~id~~~--~~v~v~~~~----~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~v~~~ 131 (452)
T 3oc4_A 60 ARYITEEELRRQKIQLLLNREVVAMDVEN--QLIAWTRKE----EQQWYSYDKLILATGASQFSTQIRGSQT--EKLLKY 131 (452)
T ss_dssp -CCCCHHHHHHTTEEEECSCEEEEEETTT--TEEEEEETT----EEEEEECSEEEECCCCCBCCCCCBTTTC--TTEEEG
T ss_pred hhcCCHHHHHHCCCEEEECCEEEEEECCC--CEEEEEecC----ceEEEEcCEEEECCCcccCCCCCCCCCC--CCEEEe
Confidence 11112344566788888999999998765 665554111 2368999999999999999999998764 224444
Q ss_pred CCCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 159 SKYENGGK-----FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 159 ~~~~~~~~-----~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
..+.+... ..+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|. .+.++...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~d~~~~~~l--------------- 195 (452)
T 3oc4_A 132 KFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLE-NLLPKYFDKEMVAEV--------------- 195 (452)
T ss_dssp GGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTTCCHHHHHHH---------------
T ss_pred CCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-ccccccCCHHHHHHH---------------
Confidence 33322211 258999999999999999999999999999999998 66664 344333332
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CCe--EEEcCCcEeeccEE
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RNE--VEFENGKIEEFEAI 306 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~~--v~~~~g~~~~~D~v 306 (381)
.+.+++.+++++.+ |+++. +++ +.++++ ++++|.|
T Consensus 196 --------------------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~V 236 (452)
T 3oc4_A 196 --------------------------------------QKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSG 236 (452)
T ss_dssp --------------------------------------HHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEE
T ss_pred --------------------------------------HHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEE
Confidence 44457788999887 88887 233 556666 8999999
Q ss_pred EEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-----------c--CccHHHHHHHHHhh
Q 035902 307 IFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-----------H--GISIDAKNIANDIN 373 (381)
Q Consensus 307 i~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-----------~--~a~~~a~~~a~~i~ 373 (381)
|+|+|++|+++ ++. . .--++++|++.+| +.++++.|||||+|||++.. . .|..||+.+|++|.
T Consensus 237 v~A~G~~p~~~-~l~-~-~~~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 312 (452)
T 3oc4_A 237 IFALNLHPQLA-YLD-K-KIQRNLDQTIAVD-AYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLE 312 (452)
T ss_dssp EECSCCBCCCS-SCC-T-TSCBCTTSCBCCC-TTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSS
T ss_pred EECcCCCCChH-HHH-h-hhccCCCCCEEEC-cCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhc
Confidence 99999999986 344 3 3227789999999 56778999999999998753 1 78999999999998
Q ss_pred hc
Q 035902 374 LA 375 (381)
Q Consensus 374 ~~ 375 (381)
+.
T Consensus 313 g~ 314 (452)
T 3oc4_A 313 EK 314 (452)
T ss_dssp SC
T ss_pred CC
Confidence 74
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=281.86 Aligned_cols=302 Identities=16% Similarity=0.180 Sum_probs=214.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCee-eecCC---cccccCCCC-CCCCCCCCCCH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMK-LHLAK---QFCELPHMP-FPSRTPTFVPR 76 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~-~~~~~---~~~~~~~~~-~~~~~~~~~~~ 76 (381)
++||+|||||++|+++|..|++.|.+|+|||++..+||.|... +.+... ..... .......+. ++.....+++.
T Consensus 43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 122 (523)
T 1mo9_A 43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI 122 (523)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhH
Confidence 4899999999999999999999999999999998788865421 111000 00000 000001110 11111223346
Q ss_pred HHHHHHHH-------HHH-----HHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 77 ISFINYVD-------NYV-----SQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 77 ~~~~~~~~-------~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.++.+++. ..+ ++.+++++++.++..++. +. +.+. + ..+.||+||+|||+.|..|+
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~----~~--v~~~-g-----~~~~~d~lViATGs~p~~p~ 190 (523)
T 1mo9_A 123 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN----HT--VEAA-G-----KVFKAKNLILAVGAGPGTLD 190 (523)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET----TE--EEET-T-----EEEEBSCEEECCCEECCCCC
T ss_pred HHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC----CE--EEEC-C-----EEEEeCEEEECCCCCCCCCC
Confidence 66666654 344 566888775667766652 33 5554 3 67999999999999999999
Q ss_pred CCCCCCCCcceeecCCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 145 VPGLGSFEGEYMHSSKYE-NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++|.+. . .++++.++. ......+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+.++...+
T Consensus 191 i~G~~~-~-~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~-~~l~~~~~~~~~~l------ 261 (523)
T 1mo9_A 191 VPGVNA-K-GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE-PLKLIKDNETRAYV------ 261 (523)
T ss_dssp STTTTS-B-TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTTCCSHHHHHHH------
T ss_pred CCCccc-C-cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-cccccccHHHHHHH------
Confidence 998764 2 245555444 3333334999999999999999999999999999999998 66665544433333
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce------E
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE------V 293 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~------v 293 (381)
.+.+++.+++++.+ |+++.. ++ +
T Consensus 262 -----------------------------------------------~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v 294 (523)
T 1mo9_A 262 -----------------------------------------------LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVA 294 (523)
T ss_dssp -----------------------------------------------HHHHHHTTCEEESSCEEEEEEECTTSBEEEEEE
T ss_pred -----------------------------------------------HHHHHhCCcEEEECCEEEEEEEcCCCceEEEEE
Confidence 33446678888877 777764 33 5
Q ss_pred EEcCCc-EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 294 EFENGK-IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 294 ~~~~g~-~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
.+++|+ ++++|.||+|+|++|+++.++. . .++ ++++|++.+| +.++++.|+|||+|||++.+. .|..||+.+
T Consensus 295 ~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~-~-~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~a 371 (523)
T 1mo9_A 295 MTPNGEMRIETDFVFLGLGEQPRSAELAK-I-LGLDLGPKGEVLVN-EYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYA 371 (523)
T ss_dssp EETTEEEEEECSCEEECCCCEECCHHHHH-H-HTCCBCTTSCBCCC-TTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHH
T ss_pred EECCCcEEEEcCEEEECcCCccCCccCHH-H-cCCccCCCCCEEEC-CCCccCCCCEEEEeecCCCcccHHHHHHHHHHH
Confidence 566787 8999999999999999863233 2 566 6778999999 567789999999999998654 899999999
Q ss_pred HHHhhhc
Q 035902 369 ANDINLA 375 (381)
Q Consensus 369 a~~i~~~ 375 (381)
|++|.+.
T Consensus 372 a~~i~g~ 378 (523)
T 1mo9_A 372 ARNVMGE 378 (523)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9999873
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=282.26 Aligned_cols=310 Identities=17% Similarity=0.168 Sum_probs=204.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCeeeecCC----------cccccCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMKLHLAK----------QFCELPHMPFPSR 69 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~ 69 (381)
|+++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +++...+.... ..+++.......+
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 102 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLN 102 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEEC
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccC
Confidence 456999999999999999999999999999999998899865431 11111000000 0000100000000
Q ss_pred CCCCCC-HH----HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 70 TPTFVP-RI----SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 70 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
+..... .. .+...+...+++.+++++.+... . .+ .+.+.|...++ +...+.||+||+|||+.| +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~--~~--~~~~~v~~~~g---~~~~~~~d~lViATGs~p--~~ 172 (491)
T 3urh_A 103 LQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGK-V--LG--QGKVSVTNEKG---EEQVLEAKNVVIATGSDV--AG 172 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-E--CS--SSEEEEECTTS---CEEEEECSEEEECCCEEC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-E--ec--CCEEEEEeCCC---ceEEEEeCEEEEccCCCC--CC
Confidence 010000 11 12223344455667776555422 1 22 24555554332 346799999999999986 35
Q ss_pred CCCCCC-CCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 145 VPGLGS-FEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 145 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
+||++. +.+..++...........+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .+++..+.++...+
T Consensus 173 ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~~~~l------ 245 (491)
T 3urh_A 173 IPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD-TILGGMDGEVAKQL------ 245 (491)
T ss_dssp BTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSSSSCHHHHHHH------
T ss_pred CCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc-cccccCCHHHHHHH------
Confidence 667652 2333333333333334468999999999999999999999999999999998 67676555444333
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcC
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFEN 297 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~ 297 (381)
.+.+++.+|+++.+ ++++..+ .+.+++
T Consensus 246 -----------------------------------------------~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~ 278 (491)
T 3urh_A 246 -----------------------------------------------QRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEP 278 (491)
T ss_dssp -----------------------------------------------HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEE
T ss_pred -----------------------------------------------HHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEe
Confidence 33446678888887 7777642 255553
Q ss_pred ---C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHH
Q 035902 298 ---G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNI 368 (381)
Q Consensus 298 ---g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~ 368 (381)
| +++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+
T Consensus 279 ~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~a 356 (491)
T 3urh_A 279 VKGGEATTLDAEVVLIATGRKPSTDGLGL-AKAGVVLDSRGRVEID-RHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAV 356 (491)
T ss_dssp TTSCCCEEEEESEEEECCCCEECCTTSCH-HHHTCCBCTTSCBCCC-TTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHH
T ss_pred cCCCceEEEEcCEEEEeeCCccCCCccCc-hhcCceECCCCCEeEC-CCCCCCCCCEEEEEecCCCccchhHHHHHHHHH
Confidence 4 58999999999999999965412 22566 7789999999 567789999999999997655 899999999
Q ss_pred HHHhhhcc
Q 035902 369 ANDINLAL 376 (381)
Q Consensus 369 a~~i~~~l 376 (381)
|++|.+..
T Consensus 357 a~~i~g~~ 364 (491)
T 3urh_A 357 AEIIAGQA 364 (491)
T ss_dssp HHHHTTSC
T ss_pred HHHHcCCC
Confidence 99998753
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=275.73 Aligned_cols=304 Identities=13% Similarity=0.107 Sum_probs=209.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCee-eecC---C--cccccCCCCCCCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMK-LHLA---K--QFCELPHMPFPSRTPTFVP 75 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~-~~~~---~--~~~~~~~~~~~~~~~~~~~ 75 (381)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +.+... .... . ........++. .....
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~---~~~~~ 82 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYP---EPELD 82 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCC---CCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccC---CCccC
Confidence 5899999999999999999999999999999988888754321 111000 0000 0 00000011110 01112
Q ss_pred HHHH-----------HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec-------CCCceEEEEeCEEEEccC
Q 035902 76 RISF-----------INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT-------ALDAYEEYVARYLVVATG 137 (381)
Q Consensus 76 ~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~-------~~~~~~~~~~d~vIlAtG 137 (381)
...+ ...+...+++.+++++.++.+. .+. +.+.+...++ ..++...++||+||+|||
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~--~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtG 157 (482)
T 1ojt_A 83 IDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAG 157 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EET--TEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccC--CEEEEEecCCcccccccccCcceEEEcCEEEECCC
Confidence 2222 2223455666788887776543 222 4555654433 011225799999999999
Q ss_pred CCCCCCC-CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHH
Q 035902 138 ENGLIPE-VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGML 216 (381)
Q Consensus 138 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~ 216 (381)
++|..|+ ++ .+. .++++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.++...
T Consensus 158 s~p~~~~~i~-~~~---~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~~~~~~~~ 231 (482)
T 1ojt_A 158 SRVTKLPFIP-EDP---RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD-GLMQGADRDLVKV 231 (482)
T ss_dssp EEECCCSSCC-CCT---TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHH
T ss_pred CCCCCCCCCC-ccC---cEEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC-ccccccCHHHHHH
Confidence 9988776 44 221 3555554443333 48999999999999999999999999999999998 6777655544443
Q ss_pred HHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC---
Q 035902 217 LLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--- 291 (381)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--- 291 (381)
+ .+.+++.+|+++.+ +++++.+
T Consensus 232 l-----------------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~ 258 (482)
T 1ojt_A 232 W-----------------------------------------------------QKQNEYRFDNIMVNTKTVAVEPKEDG 258 (482)
T ss_dssp H-----------------------------------------------------HHHHGGGEEEEECSCEEEEEEEETTE
T ss_pred H-----------------------------------------------------HHHHHhcCCEEEECCEEEEEEEcCCe
Confidence 3 33446678888887 7777643
Q ss_pred -eEEEcC----CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---Ccc
Q 035902 292 -EVEFEN----GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GIS 362 (381)
Q Consensus 292 -~v~~~~----g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~ 362 (381)
.+.+++ |+++++|.|++|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++.+. .|.
T Consensus 259 ~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~-~~~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~l~~~A~ 336 (482)
T 1ojt_A 259 VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISA-EKAGVAVTDRGFIEVD-KQMRTNVPHIYAIGDIVGQPMLAHKAV 336 (482)
T ss_dssp EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTG-GGTTCCCCTTSCCCCC-TTSBCSSTTEEECGGGTCSSCCHHHHH
T ss_pred EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCCh-hhcCceeCCCCCEeeC-CCcccCCCCEEEEEcccCCCccHHHHH
Confidence 366666 778999999999999999965422 33666 6778999999 567789999999999988654 899
Q ss_pred HHHHHHHHHhhhc
Q 035902 363 IDAKNIANDINLA 375 (381)
Q Consensus 363 ~~a~~~a~~i~~~ 375 (381)
.||+.+|++|.+.
T Consensus 337 ~~g~~aa~~i~g~ 349 (482)
T 1ojt_A 337 HEGHVAAENCAGH 349 (482)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999873
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=280.79 Aligned_cols=305 Identities=17% Similarity=0.179 Sum_probs=208.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCeee-ecC---Cccc-ccCCCCCC----CCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMKL-HLA---KQFC-ELPHMPFP----SRT 70 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~~-~~~---~~~~-~~~~~~~~----~~~ 70 (381)
|+++||+|||||++|+++|..|++.|.+|+|||++ .+||.|... +.+.... ... ..+. ....+..+ .++
T Consensus 1 M~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (464)
T 2a8x_A 1 MTHYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY 79 (464)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence 76799999999999999999999999999999998 566654321 1110000 000 0000 00000000 000
Q ss_pred CCCCC-H----HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 71 PTFVP-R----ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 71 ~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
+.... . ..+.+.+.+.+++.+++++.++.+. .+ .+.+.+.+.++ +...++||+||+|||+.|..|++
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~---id--~~~v~V~~~~G---~~~~~~~d~lViAtG~~~~~~~~ 151 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF---AD--ANTLLVDLNDG---GTESVTFDNAIIATGSSTRLVPG 151 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE---SS--SSEEEEEETTS---CCEEEEEEEEEECCCEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ec--CCeEEEEeCCC---ceEEEEcCEEEECCCCCCCCCCC
Confidence 00000 0 1233344566667788887776542 22 25556665443 22579999999999999988888
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
+|.+. .++++.+...... .+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|..+.++...+.
T Consensus 152 ~g~~~---~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l~------- 219 (464)
T 2a8x_A 152 TSLSA---NVVTYEEQILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLP-RALPNEDADVSKEIE------- 219 (464)
T ss_dssp CCCBT---TEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHHH-------
T ss_pred CCCCc---eEEecHHHhhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHHHHHHH-------
Confidence 88653 2455444433333 57999999999999999999999999999999998 777765554444333
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEc-CC
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFE-NG 298 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~-~g 298 (381)
+.+++.+|+++.+ ++++..+ . +.+. +|
T Consensus 220 ----------------------------------------------~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g 253 (464)
T 2a8x_A 220 ----------------------------------------------KQFKKLGVTILTATKVESIADGGSQVTVTVTKDG 253 (464)
T ss_dssp ----------------------------------------------HHHHHHTCEEECSCEEEEEEECSSCEEEEEESSS
T ss_pred ----------------------------------------------HHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCC
Confidence 3335567888877 7777643 2 3444 66
Q ss_pred --cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 299 --KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 299 --~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+++++|.|++|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+|++|
T Consensus 254 ~~~~~~~D~vv~a~G~~p~~~~l~~-~~~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i 331 (464)
T 2a8x_A 254 VAQELKAEKVLQAIGFAPNVEGYGL-DKAGVALTDRKAIGVD-DYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETI 331 (464)
T ss_dssp CEEEEEESEEEECSCEEECCSSSCH-HHHTCCBCTTSSBCCC-TTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCEEEECCCCCccCCCCCc-hhcCCccCCCCCEeEC-cCCccCCCCEEEeECcCCCccCHHHHHHHHHHHHHHh
Confidence 67999999999999999865322 22566 6778999999 567789999999999988654 7899999999999
Q ss_pred hh
Q 035902 373 NL 374 (381)
Q Consensus 373 ~~ 374 (381)
.+
T Consensus 332 ~g 333 (464)
T 2a8x_A 332 AG 333 (464)
T ss_dssp HT
T ss_pred cC
Confidence 87
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=279.27 Aligned_cols=307 Identities=15% Similarity=0.166 Sum_probs=208.4
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHh-CCCCeEEEe--------cCCCCCCCcCC-CCCCCeeeecCCc----ccccCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNN-LSVPNIILE--------REDCSASLWKK-RAYDRMKLHLAKQ----FCELPHMP 65 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~-~g~~v~lie--------~~~~~g~~~~~-~~~~~~~~~~~~~----~~~~~~~~ 65 (381)
|+ ++||+|||||++|+++|+.|++ .|.+|+||| +...+||.|.. .+++...+..... ......+.
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g 83 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFG 83 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcC
Confidence 64 5899999999999999999999 999999999 35567776543 1111100000000 00000111
Q ss_pred CCCCCC-CCCCHHHHHHH-----------HHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCC---CceEEEEe
Q 035902 66 FPSRTP-TFVPRISFINY-----------VDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTAL---DAYEEYVA 129 (381)
Q Consensus 66 ~~~~~~-~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~---~~~~~~~~ 129 (381)
+....+ ......++.++ +...+++. +++++.++ +..++ . .. |.+.+... ...+.+.|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~--~--~~--v~v~~~~~~~~~~~~~~~~ 156 (495)
T 2wpf_A 84 WEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGW-GSLES--K--NV--VVVRETADPKSAVKERLQA 156 (495)
T ss_dssp EECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESE-EEEEE--T--TE--EEEESSSSTTSCEEEEEEE
T ss_pred cccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeE-EEEee--C--CE--EEEeecCCccCCCCeEEEc
Confidence 000000 01122233332 23334555 77776654 44442 2 33 66552100 00267999
Q ss_pred CEEEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhC---CCeeEEEEecCccee
Q 035902 130 RYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSC---GACTSIVVRGPVHVL 206 (381)
Q Consensus 130 d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~---g~~v~~i~r~~~~~~ 206 (381)
|+||+|||+.|..|+++|.+. +.++.++..... .+++++|||+|.+|+|+|..|.+. |.+|+++.|.+ .++
T Consensus 157 d~lViATGs~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~-~~l 230 (495)
T 2wpf_A 157 DHILLATGSWPQMPAIPGIEH----CISSNEAFYLPE-PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNN-LIL 230 (495)
T ss_dssp EEEEECCCEEECCCCCTTGGG----CEEHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS-SSC
T ss_pred CEEEEeCCCCcCCCCCCCccc----cccHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCC-ccc
Confidence 999999999999998888742 345444443333 579999999999999999999999 99999999998 677
Q ss_pred chhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--
Q 035902 207 TREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-- 284 (381)
Q Consensus 207 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 284 (381)
|..+.++...+ .+.+++.+|+++.+
T Consensus 231 ~~~d~~~~~~l-----------------------------------------------------~~~l~~~GV~i~~~~~ 257 (495)
T 2wpf_A 231 RGFDETIREEV-----------------------------------------------------TKQLTANGIEIMTNEN 257 (495)
T ss_dssp TTSCHHHHHHH-----------------------------------------------------HHHHHHTTCEEEESCC
T ss_pred cccCHHHHHHH-----------------------------------------------------HHHHHhCCCEEEeCCE
Confidence 76555444333 33445678888877
Q ss_pred cceEeCC-----eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc
Q 035902 285 ITSINRN-----EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL 358 (381)
Q Consensus 285 v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~ 358 (381)
|+++..+ .+.+.+|+++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++.+
T Consensus 258 v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l-~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~ 335 (495)
T 2wpf_A 258 PAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQL-GNVGVKLTPKGGVQVD-EFSRTNVPNIYAIGDITDRL 335 (495)
T ss_dssp EEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTG-GGTTCCBCTTSSBCCC-TTCBCSSTTEEECGGGGCSC
T ss_pred EEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccch-hhcCccCCCCCCEEEC-CCCccCCCCEEEEeccCCCc
Confidence 7777643 467788989999999999999999864422 33676 7778999999 56778999999999999864
Q ss_pred c---CccHHHHHHHHHhhhc
Q 035902 359 H---GISIDAKNIANDINLA 375 (381)
Q Consensus 359 ~---~a~~~a~~~a~~i~~~ 375 (381)
. .|..||+.+|++|.+.
T Consensus 336 ~l~~~A~~~g~~aa~~i~g~ 355 (495)
T 2wpf_A 336 MLTPVAINEGAALVDTVFGN 355 (495)
T ss_dssp CCHHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHHhcCC
Confidence 4 8899999999999863
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=278.61 Aligned_cols=305 Identities=11% Similarity=0.088 Sum_probs=209.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCC-eeeecCC---ccc--ccCCCCCCCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDR-MKLHLAK---QFC--ELPHMPFPSRTPTFVP 75 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~-~~~~~~~---~~~--~~~~~~~~~~~~~~~~ 75 (381)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +.+. ....... .+. .+..+..+.. ....+
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 84 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS-EVRLN 84 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES-CEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccC-CCccC
Confidence 5899999999999999999999999999999998888876431 1110 0000000 000 0000000000 00011
Q ss_pred HHHH-----------HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 76 RISF-----------INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 76 ~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
...+ ...+.+.+++.+++++.++.+ .+ +. +.+.|.+.++ +.+.++||+||+|||+.|..|+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~~~v~~~~g---g~~~~~~d~lViAtGs~p~~p~ 156 (474)
T 1zmd_A 85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-IT--GK--NQVTATKADG---GTQVIDTKNILIATGSEVTPFP 156 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EE--ET--TEEEEECTTS---CEEEEEEEEEEECCCEEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--cC--CEEEEEecCC---CcEEEEeCEEEECCCCCCCCCC
Confidence 1222 222345566778888777543 33 22 5555655431 1257999999999999999988
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceec-hhhHHHHHHHHhhCcH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLT-REIVFAGMLLLKFLPC 223 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p-~~~~~~~~~~~~~l~~ 223 (381)
++|.+.. .++++.+...... .+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++| ..+.++...+
T Consensus 157 i~g~~~~--~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~l------ 226 (474)
T 1zmd_A 157 GITIDED--TIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG-HVGGVGIDMEISKNF------ 226 (474)
T ss_dssp TCCCCSS--SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSCSSCCHHHHHHH------
T ss_pred CCCCCcC--cEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC-ccCCcccCHHHHHHH------
Confidence 8887542 2555555444333 47999999999999999999999999999999998 6777 4444433332
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e-EEE---
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E-VEF--- 295 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~-v~~--- 295 (381)
.+.+++.+|+++.+ |+++..+ + +.+
T Consensus 227 -----------------------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~ 259 (474)
T 1zmd_A 227 -----------------------------------------------QRILQKQGFKFKLNTKVTGATKKSDGKIDVSIE 259 (474)
T ss_dssp -----------------------------------------------HHHHHHTTCEEECSEEEEEEEECTTSCEEEEEE
T ss_pred -----------------------------------------------HHHHHHCCCEEEeCceEEEEEEcCCceEEEEEE
Confidence 33446678888887 7777643 2 433
Q ss_pred ----cCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 296 ----ENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 296 ----~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
.+++++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|+|||+|||++.+. .|..||+.
T Consensus 260 ~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~ 337 (474)
T 1zmd_A 260 AASGGKAEVITCDVLLVCIGRRPFTKNLGL-EELGIELDPRGRIPVN-TRFQTKIPNIYAIGDVVAGPMLAHKAEDEGII 337 (474)
T ss_dssp ETTSCCCEEEEESEEEECSCEEECCTTSSH-HHHTCCCCTTSCCCCC-TTCBCSSTTEEECGGGSSSCCCHHHHHHHHHH
T ss_pred ecCCCCceEEEcCEEEECcCCCcCCCcCCc-hhcCCccCCCCCEEEC-cCCccCCCCEEEeeecCCCCccHHHHHHHHHH
Confidence 35678999999999999999865322 22556 6778999999 567789999999999988654 78999999
Q ss_pred HHHHhhhc
Q 035902 368 IANDINLA 375 (381)
Q Consensus 368 ~a~~i~~~ 375 (381)
+|++|.+.
T Consensus 338 aa~~i~~~ 345 (474)
T 1zmd_A 338 CVEGMAGG 345 (474)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 99999874
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=277.57 Aligned_cols=275 Identities=19% Similarity=0.277 Sum_probs=199.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.||+|||||+||+++|..|++.| +|+|||++++.+ |.....+. + ... ....+++..+.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~~~~l~~--------~--~~g---------~~~~~~~~~~~ 66 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YSKPMLSH--------Y--IAG---------FIPRNRLFPYS 66 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CCSTTHHH--------H--HTT---------SSCGGGGCSSC
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--cccchhHH--------H--HhC---------CCCHHHhccCC
Confidence 68999999999999999999999 999999987543 11110000 0 000 01111121222
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYEN 163 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (381)
.+++++++++++.+++|..++... +.|. .++ .++.||+||+|||+.|..|++||.+ .+++.....+
T Consensus 67 ~~~~~~~~v~~~~g~~v~~id~~~----~~V~-~~g-----~~~~~d~lViATGs~p~~p~i~G~~----~v~~~~~~~~ 132 (367)
T 1xhc_A 67 LDWYRKRGIEIRLAEEAKLIDRGR----KVVI-TEK-----GEVPYDTLVLATGARAREPQIKGKE----YLLTLRTIFD 132 (367)
T ss_dssp HHHHHHHTEEEECSCCEEEEETTT----TEEE-ESS-----CEEECSEEEECCCEEECCCCSBTGG----GEECCCSHHH
T ss_pred HHHHHhCCcEEEECCEEEEEECCC----CEEE-ECC-----cEEECCEEEECCCCCCCCCCCCCcC----CEEEEcCHHH
Confidence 344556799999998999887643 3366 444 5799999999999999999888832 2343333222
Q ss_pred CCCC-----CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhh
Q 035902 164 GGKF-----IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238 (381)
Q Consensus 164 ~~~~-----~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 238 (381)
...+ .+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++| .+.++...+
T Consensus 133 ~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~-~~~~~~~~l--------------------- 189 (367)
T 1xhc_A 133 ADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA-MFLG-LDEELSNMI--------------------- 189 (367)
T ss_dssp HHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS-CCTT-CCHHHHHHH---------------------
T ss_pred HHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC-eecc-CCHHHHHHH---------------------
Confidence 1111 35899999999999999999999999999999988 6666 333332222
Q ss_pred cCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEcCCcEeeccEEEEecCCCCCc
Q 035902 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFENGKIEEFEAIIFATGYKSTV 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 316 (381)
.+.+++.+|+++.+ +++++.+++.+++|+ +++|.|++|+|++|++
T Consensus 190 --------------------------------~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~p~~ 236 (367)
T 1xhc_A 190 --------------------------------KDMLEETGVKFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIVPNV 236 (367)
T ss_dssp --------------------------------HHHHHHTTEEEECSCCEEEECSSEEEETTEE-EECSCEEEECCEEECC
T ss_pred --------------------------------HHHHHHCCCEEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCCcCH
Confidence 34456678999887 888887789999988 9999999999999998
Q ss_pred chhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccc-------ccCccHHHHHHHHHhhhc
Q 035902 317 RNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG-------LHGISIDAKNIANDINLA 375 (381)
Q Consensus 317 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-------~~~a~~~a~~~a~~i~~~ 375 (381)
+ ++. . .++-..+| +.+| +.++++.|||||+|||+.. ...|..||+.+|++|.+.
T Consensus 237 ~-ll~-~-~gl~~~~g-i~Vd-~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~ 297 (367)
T 1xhc_A 237 D-LAR-R-SGIHTGRG-ILID-DNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 297 (367)
T ss_dssp H-HHH-H-TTCCBSSS-EECC-TTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred H-HHH-h-CCCCCCCC-EEEC-CCcccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 6 444 3 56533355 8888 5677889999999999642 128899999999999874
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=277.20 Aligned_cols=285 Identities=20% Similarity=0.263 Sum_probs=200.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+.+||+|||||++|+++|..|++. +.+|+|||+++..+.... ..+. .+.......+
T Consensus 1 M~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~----------------~~p~-----~~~~~~~~~~ 59 (449)
T 3kd9_A 1 MSLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC----------------GIPY-----VVEGLSTPDK 59 (449)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---------------------------------------
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc----------------CCcc-----ccCCCCCHHH
Confidence 7779999999999999999999998 789999999885542110 0000 0111112223
Q ss_pred HHHHH-HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceee
Q 035902 79 FINYV-DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMH 157 (381)
Q Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~ 157 (381)
+..+. +.+.++++++++++++|.+++.. .+.+.+.++ ...+.||+||+|||+.|..|+++|.+. .+ ++.
T Consensus 60 ~~~~~~~~~~~~~gi~v~~~~~v~~i~~~----~~~v~~~~g----~~~~~~d~lviAtG~~p~~p~i~G~~~-~~-v~~ 129 (449)
T 3kd9_A 60 LMYYPPEVFIKKRGIDLHLNAEVIEVDTG----YVRVRENGG----EKSYEWDYLVFANGASPQVPAIEGVNL-KG-VFT 129 (449)
T ss_dssp ------CTHHHHTTCEEETTCEEEEECSS----EEEEECSSS----EEEEECSEEEECCCEEECCCSCBTTTS-TT-EEC
T ss_pred hhhcCHHHHHHhcCcEEEecCEEEEEecC----CCEEEECCc----eEEEEcCEEEECCCCCCCCCCCCCCCC-CC-EEE
Confidence 33333 33446789999999999888643 355655443 257999999999999999999988763 22 332
Q ss_pred cCCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHH
Q 035902 158 SSKYENG-------GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFI 229 (381)
Q Consensus 158 ~~~~~~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~ 229 (381)
.....+. ..+.+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .+++. .+.++...+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~l------------ 196 (449)
T 3kd9_A 130 ADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE-RVLRRSFDKEVTDIL------------ 196 (449)
T ss_dssp SCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTTSCHHHHHHH------------
T ss_pred eCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC-ccchhhcCHHHHHHH------------
Confidence 2221110 12257899999999999999999999999999999998 66665 444433333
Q ss_pred HHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe---EEEcCCcEeecc
Q 035902 230 VVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE---VEFENGKIEEFE 304 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~---v~~~~g~~~~~D 304 (381)
.+.+++. ++++.+ +.+++.+. ..+.+++++++|
T Consensus 197 -----------------------------------------~~~l~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D 234 (449)
T 3kd9_A 197 -----------------------------------------EEKLKKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAE 234 (449)
T ss_dssp -----------------------------------------HHHHTTT-SEEEESCCEEEEECSSSCCEEEETTEEEECS
T ss_pred -----------------------------------------HHHHHhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECC
Confidence 2333455 777766 77776542 345678899999
Q ss_pred EEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccc-------c------ccCccHHHHHHHH
Q 035902 305 AIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRT-------G------LHGISIDAKNIAN 370 (381)
Q Consensus 305 ~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-------~------~~~a~~~a~~~a~ 370 (381)
.||+|+|++|+++. +. . .++ ++++|++.+| +.++++.|||||+|||+. . ...|..||+.+|+
T Consensus 235 ~Vv~a~G~~p~~~l-~~-~-~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~ 310 (449)
T 3kd9_A 235 LVILATGIKPNIEL-AK-Q-LGVRIGETGAIWTN-EKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGS 310 (449)
T ss_dssp EEEECSCEEECCHH-HH-H-TTCCBCTTSSBCCC-TTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHH
T ss_pred EEEEeeCCccCHHH-HH-h-CCccCCCCCCEEEC-CCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHH
Confidence 99999999999863 33 3 666 7888999999 567789999999999974 1 1278999999999
Q ss_pred Hhhhc
Q 035902 371 DINLA 375 (381)
Q Consensus 371 ~i~~~ 375 (381)
+|.+.
T Consensus 311 ~i~g~ 315 (449)
T 3kd9_A 311 NIAGK 315 (449)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 99874
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=278.11 Aligned_cols=302 Identities=15% Similarity=0.155 Sum_probs=203.2
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCe-eeecCC---cccccCCCCCCCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRM-KLHLAK---QFCELPHMPFPSRTPTFV 74 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ 74 (381)
|+ ++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +.+.. ...... .+..........+++...
T Consensus 1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T 3l8k_A 1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQ 80 (466)
T ss_dssp -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHH
T ss_pred CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 64 5899999999999999999999999999999999999976531 11100 000000 000000011001111100
Q ss_pred C-HHHHH-----HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 75 P-RISFI-----NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 75 ~-~~~~~-----~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
. ...+. .++...+++.+++++.+ ++..++ . ..+.|...++ +...+.||+||+|||+.|..|+++|.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id--~--~~~~V~~~~g---~~~~~~~d~lviAtG~~p~~p~i~G~ 152 (466)
T 3l8k_A 81 DRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKD--P--THVIVKTDEG---KEIEAETRYMIIASGAETAKLRLPGV 152 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEE--T--TEEEEEETTS---CEEEEEEEEEEECCCEEECCCCCTTG
T ss_pred HHHHhheeccccchHHHHHHhCCCEEEEe-EEEEec--C--CeEEEEcCCC---cEEEEecCEEEECCCCCccCCCCCCc
Confidence 0 11111 33333444456665554 455554 2 4566766554 22339999999999999999999987
Q ss_pred CCCCcceeecCCCC---CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHH
Q 035902 149 GSFEGEYMHSSKYE---NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCK 224 (381)
Q Consensus 149 ~~~~~~~~~~~~~~---~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~ 224 (381)
+. +.+..++. ......+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|.. +.++...+.+.+
T Consensus 153 ~~----~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~d~~~~~~l~~~l--- 224 (466)
T 3l8k_A 153 EY----CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD-RALITLEDQDIVNTLLSIL--- 224 (466)
T ss_dssp GG----SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCCHHHHHHHHHHH---
T ss_pred cc----eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC-cCCCCCCCHHHHHHHHhcC---
Confidence 62 33333322 1223357999999999999999999999999999999998 677766 555444443322
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC---Ce--EEEc-
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR---NE--VEFE- 296 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~---~~--v~~~- 296 (381)
+ ++++.+ ++++.. ++ +.++
T Consensus 225 --------------------------------------------------~---v~i~~~~~v~~i~~~~~~~v~v~~~~ 251 (466)
T 3l8k_A 225 --------------------------------------------------K---LNIKFNSPVTEVKKIKDDEYEVIYST 251 (466)
T ss_dssp --------------------------------------------------C---CCEECSCCEEEEEEEETTEEEEEECC
T ss_pred --------------------------------------------------E---EEEEECCEEEEEEEcCCCcEEEEEEe
Confidence 1 555554 666654 32 5566
Q ss_pred -CCc--EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHH
Q 035902 297 -NGK--IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIA 369 (381)
Q Consensus 297 -~g~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a 369 (381)
+|+ ++++|.|++|+|++|++. +.. +..++ ++++| +.+| +.++++.|||||+|||++.+. .|..||+.+|
T Consensus 252 ~~G~~~~i~~D~vi~a~G~~p~~~-l~l-~~~gl~~~~~G-i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa 327 (466)
T 3l8k_A 252 KDGSKKSIFTNSVVLAAGRRPVIP-EGA-REIGLSISKTG-IVVD-ETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAA 327 (466)
T ss_dssp TTSCCEEEEESCEEECCCEEECCC-TTT-GGGTCCBCSSS-BCCC-TTCBCSSTTEEECGGGTCSCCSHHHHHHHHHHHH
T ss_pred cCCceEEEEcCEEEECcCCCcccc-cch-hhcCceeCCCC-EeEC-CCccCCCCCEEEEEecCCCCccHhHHHHHHHHHH
Confidence 565 899999999999999997 412 33666 78889 9998 677789999999999998654 8999999999
Q ss_pred HHhhhc
Q 035902 370 NDINLA 375 (381)
Q Consensus 370 ~~i~~~ 375 (381)
++|.+.
T Consensus 328 ~~i~~~ 333 (466)
T 3l8k_A 328 NNIMAN 333 (466)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 999864
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=281.27 Aligned_cols=272 Identities=17% Similarity=0.186 Sum_probs=198.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+.+|+|||||+||++||..|...+.+|+|||+++..+. ..... +..+ ....+..++..+
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y--~~~~l-------~~~l------------~g~~~~~~l~~~ 67 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY--YRPRL-------NEII------------AKNKSIDDILIK 67 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB--CGGGH-------HHHH------------HSCCCGGGTBSS
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc--ccChh-------hHHH------------cCCCCHHHccCC
Confidence 47899999999999999999777899999999986541 00000 0000 001111222223
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
..+.+++++++++++++|++++.++ +. |++.++ +.+.||+||+|||+.|..|++||.+ .+++.....
T Consensus 68 ~~~~~~~~~i~~~~~~~V~~id~~~--~~--v~~~~g-----~~~~yd~lvlAtG~~p~~p~i~G~~----~v~~~~~~~ 134 (385)
T 3klj_A 68 KNDWYEKNNIKVITSEFATSIDPNN--KL--VTLKSG-----EKIKYEKLIIASGSIANKIKVPHAD----EIFSLYSYD 134 (385)
T ss_dssp CHHHHHHTTCEEECSCCEEEEETTT--TE--EEETTS-----CEEECSEEEECCCEEECCCCCTTCS----CEECCSSHH
T ss_pred CHHHHHHCCCEEEeCCEEEEEECCC--CE--EEECCC-----CEEECCEEEEecCCCcCCCCCCCCC----CeEEeCCHH
Confidence 3445567799999999999998765 44 777776 6899999999999999999999876 133333222
Q ss_pred CCCCC-----CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHHhhh
Q 035902 163 NGGKF-----IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVMLSKM 236 (381)
Q Consensus 163 ~~~~~-----~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (381)
+.... .+++++|||+|.+|+|+|..|++.|.+|+++.|.+ +++++ .+.+....+
T Consensus 135 d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~-~~l~~~~~~~~~~~~------------------- 194 (385)
T 3klj_A 135 DALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILE-YPLERQLDRDGGLFL------------------- 194 (385)
T ss_dssp HHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS-SSCTTTSCHHHHHHH-------------------
T ss_pred HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC-ccchhhcCHHHHHHH-------------------
Confidence 21111 27899999999999999999999999999999998 66665 333322222
Q ss_pred hhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEcCCcEeeccEEEEecCCCC
Q 035902 237 KFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFENGKIEEFEAIIFATGYKS 314 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p 314 (381)
.+.+++.+++++.+ ++++ |+++++|.||+|+|++|
T Consensus 195 ----------------------------------~~~l~~~gV~~~~~~~v~~i---------g~~~~~D~vv~a~G~~p 231 (385)
T 3klj_A 195 ----------------------------------KDKLDRLGIKIYTNSNFEEM---------GDLIRSSCVITAVGVKP 231 (385)
T ss_dssp ----------------------------------HHHHHTTTCEEECSCCGGGC---------HHHHHHSEEEECCCEEE
T ss_pred ----------------------------------HHHHHhCCCEEEeCCEEEEc---------CeEEecCeEEECcCccc
Confidence 34456678888876 6655 67899999999999999
Q ss_pred CcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-------cCccHHHHHHHHHhhhcc
Q 035902 315 TVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------HGISIDAKNIANDINLAL 376 (381)
Q Consensus 315 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------~~a~~~a~~~a~~i~~~l 376 (381)
+++. +. . .++-..+| +.+| +.++++.|+|||+|||+... ..|..||+.+|++|.+..
T Consensus 232 ~~~~-~~-~-~gl~~~~g-i~vd-~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~ 295 (385)
T 3klj_A 232 NLDF-IK-D-TEIASKRG-ILVN-DHMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295 (385)
T ss_dssp CCGG-GT-T-SCCCBSSS-EEEC-TTCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred Chhh-hh-h-cCCCcCCC-EEEC-CCcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence 9853 43 3 56644456 8888 56778999999999998631 279999999999998754
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=276.52 Aligned_cols=300 Identities=19% Similarity=0.219 Sum_probs=205.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCee-eecC--------CcccccCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMK-LHLA--------KQFCELPHMPFPSRT 70 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~-~~~~--------~~~~~~~~~~~~~~~ 70 (381)
|+++||+|||||+||+++|..|++.|.+|+|||++. +||.|... +.+... .... ...+++.... ..++
T Consensus 4 m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~-~~~~ 81 (464)
T 2eq6_A 4 MKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKP-ELDL 81 (464)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCC-EECH
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCC-CcCH
Confidence 445899999999999999999999999999999987 77765421 111000 0000 0000111000 0000
Q ss_pred CCCC-CHHHHHHH----HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC-
Q 035902 71 PTFV-PRISFINY----VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE- 144 (381)
Q Consensus 71 ~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~- 144 (381)
+.+. ...++.++ +...+++.+++++.++.+. + +. +. +.+. + ..++||+||+|||+.|..|+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~--~~--v~v~-g-----~~~~~d~lViATGs~p~~p~g 148 (464)
T 2eq6_A 82 KKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-V--GP--KE--VEVG-G-----ERYGAKSLILATGSEPLELKG 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-E--ET--TE--EEET-T-----EEEEEEEEEECCCEEECCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-c--cC--CE--EEEc-c-----EEEEeCEEEEcCCCCCCCCCC
Confidence 1000 01122222 3445566788887776442 3 22 33 5554 3 57999999999999988775
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
+++ + +.++++.+........+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.++...+
T Consensus 149 i~~-~---~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l------- 216 (464)
T 2eq6_A 149 FPF-G---EDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP-EILPQGDPETAALL------- 216 (464)
T ss_dssp BCC-S---SSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHH-------
T ss_pred CCC-C---CcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC-ccccccCHHHHHHH-------
Confidence 555 2 13555555444333357999999999999999999999999999999998 67776554443333
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEc-C
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFE-N 297 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~-~ 297 (381)
.+.+++.+|+++.+ +++++.+ .+.++ +
T Consensus 217 ----------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~ 250 (464)
T 2eq6_A 217 ----------------------------------------------RRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPA 250 (464)
T ss_dssp ----------------------------------------------HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEET
T ss_pred ----------------------------------------------HHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeec
Confidence 33345678888887 7777643 25555 6
Q ss_pred --Cc--EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHH
Q 035902 298 --GK--IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIA 369 (381)
Q Consensus 298 --g~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a 369 (381)
|+ ++++|.|++|+|++|+.+.+.. +..++ ++++|++.+| +.++++.|+|||+|||.+.+. .|..||+.+|
T Consensus 251 ~~g~~~~i~~D~vv~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa 328 (464)
T 2eq6_A 251 EGGEGEEVVVDKVLVAVGRKPRTEGLGL-EKAGVKVDERGFIRVN-ARMETSVPGVYAIGDAARPPLLAHKAMREGLIAA 328 (464)
T ss_dssp TCCSCEEEEESEEEECSCEEESCTTSSH-HHHTCCBCTTSCBCCC-TTCBCSSTTEEECGGGTCSSCCHHHHHHHHHHHH
T ss_pred CCCceeEEEcCEEEECCCcccCCCCCCh-hhcCceecCCCCEEEC-CCcccCCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 76 8999999999999999865422 22555 6778999999 567789999999999987654 7899999999
Q ss_pred HHhhhc
Q 035902 370 NDINLA 375 (381)
Q Consensus 370 ~~i~~~ 375 (381)
++|.+.
T Consensus 329 ~~i~g~ 334 (464)
T 2eq6_A 329 ENAAGK 334 (464)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 999873
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=289.11 Aligned_cols=290 Identities=14% Similarity=0.184 Sum_probs=208.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+||+|||||+||+++|..|++. +.+|+|||+++..+. ..... +. .... ........+.+
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~--~~~~l-------~~---~~~~-------~~~~~~~~~~~ 62 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSF--ANCGL-------PY---HISG-------EIAQRSALVLQ 62 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB--CGGGH-------HH---HHTS-------SSCCGGGGBCC
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccc--cccCc-------hH---HhcC-------CcCChHHhhcc
Confidence 6899999999999999999998 789999999986541 10000 00 0000 00012223445
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
+++.+.++++++++++++|++++.+. +. +.+.+...+....+.||+||+|||+.|..|++||.+... +++....
T Consensus 63 ~~~~~~~~~~i~~~~~~~V~~id~~~--~~--v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~--v~~~~~~ 136 (565)
T 3ntd_A 63 TPESFKARFNVEVRVKHEVVAIDRAA--KL--VTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPL--THSLRNI 136 (565)
T ss_dssp CHHHHHHHHCCEEETTEEEEEEETTT--TE--EEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTT--EECCSSH
T ss_pred CHHHHHHhcCcEEEECCEEEEEECCC--CE--EEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCC--EEEeCCH
Confidence 55666677899999999999998765 55 444432222335799999999999999999999986422 3333221
Q ss_pred CCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHh
Q 035902 162 ENG-------GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLS 234 (381)
Q Consensus 162 ~~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (381)
.+. ....+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .++|..+.++...+.+
T Consensus 137 ~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l~~--------------- 200 (565)
T 3ntd_A 137 PDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELAD-QVMTPVDREMAGFAHQ--------------- 200 (565)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSCTTSCHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC-ccchhcCHHHHHHHHH---------------
Confidence 111 11357899999999999999999999999999999998 7777655544443333
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC---------------------C
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR---------------------N 291 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~---------------------~ 291 (381)
.+++.+++++.+ ++++.. +
T Consensus 201 --------------------------------------~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 242 (565)
T 3ntd_A 201 --------------------------------------AIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKG 242 (565)
T ss_dssp --------------------------------------HHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTC
T ss_pred --------------------------------------HHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCC
Confidence 334556666665 666543 1
Q ss_pred --eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccc-------cc---
Q 035902 292 --EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRT-------GL--- 358 (381)
Q Consensus 292 --~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-------~~--- 358 (381)
.+.+.+|+++++|.||+|+|++|+++ ++. . .++ ++++|++.+| +.++++.|||||+|||+. .+
T Consensus 243 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~-l~~-~-~g~~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~ 318 (565)
T 3ntd_A 243 HLSLTLSNGELLETDLLIMAIGVRPETQ-LAR-D-AGLAIGELGGIKVN-AMMQTSDPAIYAVGDAVEEQDFVTGQACLV 318 (565)
T ss_dssp EEEEEETTSCEEEESEEEECSCEEECCH-HHH-H-HTCCBCTTSSBCCC-TTCBCSSTTEEECGGGBCEEBTTTCCEECC
T ss_pred cEEEEEcCCCEEEcCEEEECcCCccchH-HHH-h-CCcccCCCCCEEEC-CCcccCCCCEEEeeeeEeeccccCCceeec
Confidence 35667888999999999999999986 343 3 566 7788999999 567789999999999973 21
Q ss_pred ---cCccHHHHHHHHHhhhcc
Q 035902 359 ---HGISIDAKNIANDINLAL 376 (381)
Q Consensus 359 ---~~a~~~a~~~a~~i~~~l 376 (381)
..|..||+.+|++|.+.-
T Consensus 319 ~~~~~A~~~g~~aa~~i~g~~ 339 (565)
T 3ntd_A 319 PLAGPANRQGRMAADNMFGRE 339 (565)
T ss_dssp CCHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHHhcCCC
Confidence 168899999999998743
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=279.94 Aligned_cols=302 Identities=17% Similarity=0.248 Sum_probs=197.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCeee-ec---C-----CcccccCCCCCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMKL-HL---A-----KQFCELPHMPFPSRTP 71 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~~-~~---~-----~~~~~~~~~~~~~~~~ 71 (381)
.++||+|||||++|+++|..|++.|.+|+|||++. +||.|... +.+...+ .. . ...+++... ...+++
T Consensus 1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~ 78 (500)
T 1onf_A 1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK-FSFNLP 78 (500)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC-CCCCHH
T ss_pred CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC-CccCHH
Confidence 15999999999999999999999999999999984 77765431 1111000 00 0 000111100 000111
Q ss_pred CCCC-H----HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec--------CCCceEEEEeCEEEEccCC
Q 035902 72 TFVP-R----ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT--------ALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 72 ~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~--------~~~~~~~~~~d~vIlAtG~ 138 (381)
.+.. . ..+...+...+++.+++++.++.+ .++ . +. +.+.+. .......+.||+||+|||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~id--~--~~--v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs 151 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTAS-FLS--E--NR--ILIKGTKDNNNKDNGPLNEEILEGRNILIAVGN 151 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCC-CC--------------------------------CBSSEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eee--C--CE--EEEEeccccccccccCCCceEEEeCEEEECCCC
Confidence 1100 0 122223445556678887666432 222 1 23 333220 0001156899999999999
Q ss_pred CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHH
Q 035902 139 NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLL 218 (381)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~ 218 (381)
.|..|+++|.+. +.++.++..... +++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.++...+
T Consensus 152 ~p~~p~i~G~~~----~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~~~~l- 223 (500)
T 1onf_A 152 KPVFPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN-RILRKFDESVINVL- 223 (500)
T ss_dssp CBCCCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS-SSCTTSCHHHHHHH-
T ss_pred CCCCCCCCCCCc----ccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCC-ccCcccchhhHHHH-
Confidence 999998888642 455544444333 8999999999999999999999999999999998 67776655544433
Q ss_pred hhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----
Q 035902 219 KFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----- 291 (381)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----- 291 (381)
.+.+++.+|+++.+ +++++.+
T Consensus 224 ----------------------------------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 251 (500)
T 1onf_A 224 ----------------------------------------------------ENDMKKNNINIVTFADVVEIKKVSDKNL 251 (500)
T ss_dssp ----------------------------------------------------HHHHHHTTCEEECSCCEEEEEESSTTCE
T ss_pred ----------------------------------------------------HHHHHhCCCEEEECCEEEEEEEcCCceE
Confidence 33446678888887 7777642
Q ss_pred eEEEcCCcE-eeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccc---------------
Q 035902 292 EVEFENGKI-EEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSR--------------- 355 (381)
Q Consensus 292 ~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~--------------- 355 (381)
.+.+++|++ +++|.|++|+|++|+++.+.. +..++-.++|++.+| +.++++.|+|||+|||+
T Consensus 252 ~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~-~~~g~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~ 329 (500)
T 1onf_A 252 SIHLSDGRIYEHFDHVIYCVGRSPDTENLKL-EKLNVETNNNYIVVD-ENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLK 329 (500)
T ss_dssp EEEETTSCEEEEESEEEECCCBCCTTTTSSC-TTTTCCBSSSCEEEC-TTCBCSSSSEEECSTTEEEC------------
T ss_pred EEEECCCcEEEECCEEEECCCCCcCCCCCCc-hhcCccccCCEEEEC-CCcccCCCCEEEEecccccccccccccccccc
Confidence 466778887 999999999999999864422 336662278999999 56678999999999998
Q ss_pred -------------------cccc---CccHHHHHHHHHhhh
Q 035902 356 -------------------TGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 356 -------------------~~~~---~a~~~a~~~a~~i~~ 374 (381)
+.+. .|..||+.+|++|.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g 370 (500)
T 1onf_A 330 LYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFL 370 (500)
T ss_dssp ------------------CBCCCCHHHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccccccCCcccchhHHHHHHHHHHHHHhC
Confidence 2222 789999999999986
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=277.13 Aligned_cols=310 Identities=15% Similarity=0.148 Sum_probs=212.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCC-CCCC-eeeecCC---cccccCCCCCCCCC-CC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKR-AYDR-MKLHLAK---QFCELPHMPFPSRT-PT 72 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~-~~~~-~~~~~~~---~~~~~~~~~~~~~~-~~ 72 (381)
+++||+|||||++|+++|+.|++. |.+|+|||++. +||.|... +.+. ....... ....+..+..+... ..
T Consensus 1 M~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (499)
T 1xdi_A 1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDA 79 (499)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence 158999999999999999999999 99999999988 77754321 1110 0000000 00000111000000 00
Q ss_pred CCCHHH-----------HHHHHHHHHHHhCCccccccEEEEEEEeC--CCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 73 FVPRIS-----------FINYVDNYVSQMGINPRYHRSVESASYDE--NAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 73 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..+... +...+.+.+++.+++++.++ +..++... +.+.+.|...++ +...+.||+||+|||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g---~~~~~~~d~lviATGs~ 155 (499)
T 1xdi_A 80 KISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADG---STSEHEADVVLVATGAS 155 (499)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTS---CEEEEEESEEEECCCEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCC---cEEEEEeCEEEEcCCCC
Confidence 112222 23334566677888887775 55444310 013444544433 12479999999999999
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHh
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLK 219 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~ 219 (381)
|..|+++|.+.. .+++..+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+.++...+
T Consensus 156 p~~p~i~g~~~~--~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~~~~l-- 229 (499)
T 1xdi_A 156 PRILPSAQPDGE--RILTWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQD-HVLPYEDADAALVL-- 229 (499)
T ss_dssp ECCCGGGCCCSS--SEEEGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSS-SSSCCSSHHHHHHH--
T ss_pred CCCCCCCCCCcC--cEEehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHHHHHH--
Confidence 998888887642 2556555544333 57999999999999999999999999999999998 67776555444333
Q ss_pred hCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eE
Q 035902 220 FLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EV 293 (381)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v 293 (381)
.+.+++.+++++.+ |+++..+ .+
T Consensus 230 ---------------------------------------------------~~~l~~~GV~i~~~~~V~~i~~~~~~v~v 258 (499)
T 1xdi_A 230 ---------------------------------------------------EESFAERGVRLFKNARAASVTRTGAGVLV 258 (499)
T ss_dssp ---------------------------------------------------HHHHHHTTCEEETTCCEEEEEECSSSEEE
T ss_pred ---------------------------------------------------HHHHHHCCCEEEeCCEEEEEEEeCCEEEE
Confidence 33446678888877 7777654 24
Q ss_pred EEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHH
Q 035902 294 EFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIA 369 (381)
Q Consensus 294 ~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a 369 (381)
.+.+|+++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|+|||+|||++.+. .|..||+.+|
T Consensus 259 ~~~~g~~i~aD~Vv~a~G~~p~~~~l~l-~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa 336 (499)
T 1xdi_A 259 TMTDGRTVEGSHALMTIGSVPNTSGLGL-ERVGIQLGRGNYLTVD-RVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAM 336 (499)
T ss_dssp EETTSCEEEESEEEECCCEEECCSSSCT-TTTTCCCBTTTBCCCC-SSSBCSSTTEEECSGGGTSCSCHHHHHHHHHHHH
T ss_pred EECCCcEEEcCEEEECCCCCcCCCcCCc-hhcCceECCCCCEEEC-CCcccCCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 4567889999999999999999864322 33666 6778999999 567789999999999988654 7999999999
Q ss_pred HHhhhc
Q 035902 370 NDINLA 375 (381)
Q Consensus 370 ~~i~~~ 375 (381)
++|.+.
T Consensus 337 ~~i~g~ 342 (499)
T 1xdi_A 337 YHALGE 342 (499)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 999874
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=276.02 Aligned_cols=306 Identities=13% Similarity=0.119 Sum_probs=211.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCe-eeecC---------CcccccCCCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRM-KLHLA---------KQFCELPHMPFPSRTP 71 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~-~~~~~---------~~~~~~~~~~~~~~~~ 71 (381)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +.+.. ..... ...+++.......++.
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA 85 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence 5899999999999999999999999999999998888876431 11100 00000 0000000000000001
Q ss_pred CCC-CHH----HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 72 TFV-PRI----SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 72 ~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
.+. ... .+.+.+...+++.+++++.++.+. + +. +.+.|.+.++ +...++||+||+|||+.|..|+++
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~--~~~~v~~~~G---~~~~i~~d~lIiAtGs~p~~p~~~ 157 (470)
T 1dxl_A 86 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SP--SEISVDTIEG---ENTVVKGKHIIIATGSDVKSLPGV 157 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ET--TEEEECCSSS---CCEEEECSEEEECCCEEECCBTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cC--CEEEEEeCCC---ceEEEEcCEEEECCCCCCCCCCCC
Confidence 000 011 123334556667789888887553 3 33 4555654433 225799999999999999988888
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 147 GLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
|.+.. .++++.+...... .+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 158 g~~~~--~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l--------- 224 (470)
T 1dxl_A 158 TIDEK--KIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS-EIVPTMDAEIRKQF--------- 224 (470)
T ss_dssp CCCSS--SEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHH---------
T ss_pred CCCcc--cEEeHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cccccccHHHHHHH---------
Confidence 86531 2455554443333 57999999999999999999999999999999998 67776555443333
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEc---C
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFE---N 297 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~---~ 297 (381)
.+.+++.+|+++.+ +++++.+ .+.++ +
T Consensus 225 --------------------------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~ 260 (470)
T 1dxl_A 225 --------------------------------------------QRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAG 260 (470)
T ss_dssp --------------------------------------------HHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSS
T ss_pred --------------------------------------------HHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCC
Confidence 33345667888877 8888754 23443 4
Q ss_pred C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHH
Q 035902 298 G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIAND 371 (381)
Q Consensus 298 g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~ 371 (381)
| +++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+|++
T Consensus 261 g~~~~~~~D~vv~a~G~~p~~~~l~~-~~~gl~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~ 338 (470)
T 1dxl_A 261 GEQTIIEADVVLVSAGRTPFTSGLNL-DKIGVETDKLGRILVN-ERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEY 338 (470)
T ss_dssp CCCEEEEESEEECCCCEEECCTTSCC-TTTTCCBCSSSCBCCC-TTCBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHH
T ss_pred CcceEEECCEEEECCCCCcCCCCCCc-hhcCCccCCCCCEeEC-cCCccCCCCEEEEeccCCCCccHHHHHHHHHHHHHH
Confidence 5 68999999999999999865422 33666 6778999999 567789999999999988654 789999999999
Q ss_pred hhhc
Q 035902 372 INLA 375 (381)
Q Consensus 372 i~~~ 375 (381)
|.+.
T Consensus 339 i~g~ 342 (470)
T 1dxl_A 339 LAGK 342 (470)
T ss_dssp HTTS
T ss_pred HcCC
Confidence 9874
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=274.99 Aligned_cols=301 Identities=16% Similarity=0.222 Sum_probs=204.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCeee-ecC---CcccccCCCCCCCC----C-CC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMKL-HLA---KQFCELPHMPFPSR----T-PT 72 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~~-~~~---~~~~~~~~~~~~~~----~-~~ 72 (381)
++||+|||||++|+++|..|++.|.+|+|||++ .+||.|... +.+...+ ... ........+.+... . ..
T Consensus 11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (479)
T 2hqm_A 11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHL 89 (479)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGC
T ss_pred cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccC
Confidence 589999999999999999999999999999997 577766421 1110000 000 00000000000000 0 00
Q ss_pred CCCHHHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 73 FVPRISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 73 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
......+. ..+...+++.+++++.++ +..+ + .+.+.+...++ +...+.||+||+|||+.|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~--~~~~~v~~~~g---~~~~~~~d~lviAtGs~p~ 161 (479)
T 2hqm_A 90 TFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN--K--DGNVEVQKRDN---TTEVYSANHILVATGGKAI 161 (479)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC--T--TSCEEEEESSS---CCEEEEEEEEEECCCEEEC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe--e--CCEEEEEeCCC---cEEEEEeCEEEEcCCCCCC
Confidence 11122222 233344555677766553 4333 2 24455655444 1247999999999999999
Q ss_pred CC-CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhh
Q 035902 142 IP-EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKF 220 (381)
Q Consensus 142 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~ 220 (381)
.| ++||.+. +.++.++.... ..+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .++|..+.++...+.
T Consensus 162 ~p~~i~g~~~----~~~~~~~~~l~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~~~~l~-- 233 (479)
T 2hqm_A 162 FPENIPGFEL----GTDSDGFFRLE-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGE-TVLRKFDECIQNTIT-- 233 (479)
T ss_dssp CCTTSTTGGG----SBCHHHHHHCS-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHHHHHH--
T ss_pred CCCCCCCccc----ccchHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCC-ccccccCHHHHHHHH--
Confidence 88 8888642 23333322222 258999999999999999999999999999999998 666765554444333
Q ss_pred CcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC------e
Q 035902 221 LPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN------E 292 (381)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~------~ 292 (381)
+.+++.+|+++.+ |+++..+ .
T Consensus 234 ---------------------------------------------------~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~ 262 (479)
T 2hqm_A 234 ---------------------------------------------------DHYVKEGINVHKLSKIVKVEKNVETDKLK 262 (479)
T ss_dssp ---------------------------------------------------HHHHHHTCEEECSCCEEEEEECC-CCCEE
T ss_pred ---------------------------------------------------HHHHhCCeEEEeCCEEEEEEEcCCCcEEE
Confidence 3345567888877 7777642 4
Q ss_pred EEEcCC-cEeeccEEEEecCCCCCcchh-ccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHH
Q 035902 293 VEFENG-KIEEFEAIIFATGYKSTVRNW-LKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAK 366 (381)
Q Consensus 293 v~~~~g-~~~~~D~vi~a~G~~p~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~ 366 (381)
+.+++| +++++|.||+|+|++|++ .+ +. . .++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+
T Consensus 263 v~~~~G~~~i~~D~vv~a~G~~p~~-~l~l~-~-~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~ 338 (479)
T 2hqm_A 263 IHMNDSKSIDDVDELIWTIGRKSHL-GMGSE-N-VGIKLNSHDQIIAD-EYQNTNVPNIYSLGDVVGKVELTPVAIAAGR 338 (479)
T ss_dssp EEETTSCEEEEESEEEECSCEEECC-CSSGG-G-GTCCBCTTSCBCCC-TTCBCSSTTEEECGGGTTSSCCHHHHHHHHH
T ss_pred EEECCCcEEEEcCEEEECCCCCCcc-ccChh-h-cCceECCCCCEeEC-CCCccCCCCEEEEEecCCCcccHHHHHHHHH
Confidence 667788 789999999999999998 44 33 3 666 7788999999 566789999999999987644 8899999
Q ss_pred HHHHHhhhc
Q 035902 367 NIANDINLA 375 (381)
Q Consensus 367 ~~a~~i~~~ 375 (381)
.+|++|.+.
T Consensus 339 ~aa~~i~~~ 347 (479)
T 2hqm_A 339 KLSNRLFGP 347 (479)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHhcCC
Confidence 999999864
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=273.49 Aligned_cols=303 Identities=14% Similarity=0.185 Sum_probs=207.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCe-eeecC--------CcccccCCCCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRM-KLHLA--------KQFCELPHMPFPSRTPT 72 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~ 72 (381)
++||+|||||++|+++|..|++.|.+|+|||++ .+||.|... +.+.. ..... ...++........+++.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 81 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK 81 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence 489999999999999999999999999999998 677765321 11100 00000 00000000000000000
Q ss_pred CCC-HH----HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 73 FVP-RI----SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 73 ~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
... .. .+.+.+.+.+++.+++++.++.+. + +. +.+.+.+.++ ...++||+||+|||+.|..|+++|
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-i--d~--~~v~V~~~~G----~~~i~~d~lViATGs~p~~~~~~g 152 (455)
T 1ebd_A 82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-V--DA--NTVRVVNGDS----AQTYTFKNAIIATGSRPIELPNFK 152 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-E--ET--TEEEEEETTE----EEEEECSEEEECCCEEECCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-c--cC--CeEEEEeCCC----cEEEEeCEEEEecCCCCCCCCCCC
Confidence 000 11 133344566677788888776543 3 23 5566665433 157999999999999998888887
Q ss_pred CCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 148 LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
.+. .+.++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.++...+
T Consensus 153 ~~~---~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l---------- 217 (455)
T 1ebd_A 153 FSN---RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG-EILSGFEKQMAAII---------- 217 (455)
T ss_dssp CCS---SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHHHHHH----------
T ss_pred ccc---eEecHHHHhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-ccccccCHHHHHHH----------
Confidence 653 2455444433322 57999999999999999999999999999999998 67665544433332
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eE--EEc---CC
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EV--EFE---NG 298 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v--~~~---~g 298 (381)
.+.+++.+++++.+ |++++.+ ++ .+. ++
T Consensus 218 -------------------------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~ 254 (455)
T 1ebd_A 218 -------------------------------------------KKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGET 254 (455)
T ss_dssp -------------------------------------------HHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEE
T ss_pred -------------------------------------------HHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCce
Confidence 33345667888877 7777642 33 343 45
Q ss_pred cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 299 KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 299 ~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
+++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|+|||+|||.+.+. .|..||+.+|++|.+
T Consensus 255 ~~~~~D~vv~a~G~~p~~~~l~~-~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 255 KTIDADYVLVTVGRRPNTDELGL-EQIGIKMTNRGLIEVD-QQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAG 332 (455)
T ss_dssp EEEEESEEEECSCEEESCSSSST-TTTTCCBCTTSCBCCC-TTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTS
T ss_pred eEEEcCEEEECcCCCcccCcCCh-hhcCCccCCCCCEeeC-CCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 68999999999999999865322 33666 6778999999 567789999999999988654 789999999999987
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 333 ~ 333 (455)
T 1ebd_A 333 H 333 (455)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=275.85 Aligned_cols=300 Identities=15% Similarity=0.122 Sum_probs=206.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCee-eec---------CCcccccCCCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRMK-LHL---------AKQFCELPHMPFPSRTP 71 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~~-~~~---------~~~~~~~~~~~~~~~~~ 71 (381)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +.+... ... ....++.+.. . .
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~----~-~ 79 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVN----G-D 79 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEEC----S-C
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccC----C-C
Confidence 4899999999999999999999999999999988888865431 000000 000 0000000000 0 0
Q ss_pred CCCCHHHH-----------HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE------EEeCEEEE
Q 035902 72 TFVPRISF-----------INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE------YVARYLVV 134 (381)
Q Consensus 72 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~------~~~d~vIl 134 (381)
......++ ...+.+.+++.+++++.++.+. .+ .+.+.|.+.++. ... ++||+||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~--~~~v~V~~~~G~---~~~~~~~~~i~~d~lVi 151 (478)
T 1v59_A 80 IKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF---ED--ETKIRVTPVDGL---EGTVKEDHILDVKNIIV 151 (478)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---SS--SSEEEEECCTTC---TTCCSSCEEEEEEEEEE
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---cc--CCeEEEEecCCC---cccccccceEEeCEEEE
Confidence 01111222 2234455666788888877653 12 356666654431 123 99999999
Q ss_pred ccCCCCCCCCCCCCCCCCc-ceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHH
Q 035902 135 ATGENGLIPEVPGLGSFEG-EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFA 213 (381)
Q Consensus 135 AtG~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~ 213 (381)
|||+.|. .+||.+ +.+ .+.++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.++
T Consensus 152 AtGs~p~--~~~g~~-~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~ 226 (478)
T 1v59_A 152 ATGSEVT--PFPGIE-IDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMDGEV 226 (478)
T ss_dssp CCCEEEC--CCTTCC-CCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSSSSCHHH
T ss_pred CcCCCCC--CCCCCC-CCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC-ccccccCHHH
Confidence 9999973 345654 223 3455444443333 48999999999999999999999999999999998 6777655444
Q ss_pred HHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC-
Q 035902 214 GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR- 290 (381)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~- 290 (381)
...+ .+.+++.+|+++.+ ++++..
T Consensus 227 ~~~l-----------------------------------------------------~~~l~~~gv~i~~~~~v~~i~~~ 253 (478)
T 1v59_A 227 AKAT-----------------------------------------------------QKFLKKQGLDFKLSTKVISAKRN 253 (478)
T ss_dssp HHHH-----------------------------------------------------HHHHHHTTCEEECSEEEEEEEEE
T ss_pred HHHH-----------------------------------------------------HHHHHHCCCEEEeCCEEEEEEEe
Confidence 4333 33446678888887 777764
Q ss_pred -C----eEEEc-----CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc
Q 035902 291 -N----EVEFE-----NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 291 -~----~v~~~-----~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
+ .+.+. +++++++|.||+|+|++|+++.++. +..++ ++++|++.+| +.++++.|||||+|||...+.
T Consensus 254 ~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~ 331 (478)
T 1v59_A 254 DDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGA-EKIGLEVDKRGRLVID-DQFNSKFPHIKVVGDVTFGPM 331 (478)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCT-TTTTCCBCTTSCBCCC-TTSBCSSTTEEECGGGSSSCC
T ss_pred cCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCc-hhcCceeCCCCCEeEC-cCCccCCCCEEEeeccCCCcc
Confidence 2 34555 4568999999999999999864433 33666 6778999999 567789999999999988654
Q ss_pred ---CccHHHHHHHHHhhhc
Q 035902 360 ---GISIDAKNIANDINLA 375 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~ 375 (381)
.|..||+.+|++|.+.
T Consensus 332 ~~~~A~~~g~~aa~~i~~~ 350 (478)
T 1v59_A 332 LAHKAEEEGIAAVEMLKTG 350 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHcCC
Confidence 8999999999999873
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=274.74 Aligned_cols=300 Identities=16% Similarity=0.177 Sum_probs=201.7
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCC-eeeec---------CCcccccCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDR-MKLHL---------AKQFCELPHMPFPS 68 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~-~~~~~---------~~~~~~~~~~~~~~ 68 (381)
|+ ++||+|||||++|+++|..|++.|.+|+|||++ .+||.|... +.+. +.... ....+++.......
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T 1ges_A 1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF 79 (450)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 53 589999999999999999999999999999998 677765421 1110 00000 00000000000000
Q ss_pred CCCCCCC-H----HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 69 RTPTFVP-R----ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 69 ~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++..+.. . ..+...+...+++.+++++.++. ..++ . .. |.+ ++ ..+.||+||+|||+.|..|
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~i~--~--~~--v~~-~g-----~~~~~d~lviAtGs~p~~p 146 (450)
T 1ges_A 80 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFA-RFVD--A--KT--LEV-NG-----ETITADHILIATGGRPSHP 146 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-EEEE--T--TE--EEE-TT-----EEEEEEEEEECCCEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEec--C--CE--EEE-CC-----EEEEeCEEEECCCCCCCCC
Confidence 0010000 0 11222333444566888766643 3332 2 33 555 43 6799999999999999998
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++||.+. +.+..++..... .+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.++...+
T Consensus 147 ~i~g~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l------ 214 (450)
T 1ges_A 147 DIPGVEY----GIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD-APLPSFDPMISETL------ 214 (450)
T ss_dssp CSTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHH------
T ss_pred CCCCccc----eecHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC-chhhhhhHHHHHHH------
Confidence 8888642 233333322222 47999999999999999999999999999999988 66665544433333
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEc
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFE 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~ 296 (381)
.+.+++.+++++.+ +++++.+ .+.++
T Consensus 215 -----------------------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~ 247 (450)
T 1ges_A 215 -----------------------------------------------VEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELE 247 (450)
T ss_dssp -----------------------------------------------HHHHHHHSCEEECSCCEEEEEECTTSCEEEEET
T ss_pred -----------------------------------------------HHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEEC
Confidence 33345567788777 7777642 46778
Q ss_pred CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 297 NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+|+++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+|++|
T Consensus 248 ~g~~i~~D~vv~a~G~~p~~~~l~~-~~~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i 325 (450)
T 1ges_A 248 DGRSETVDCLIWAIGREPANDNINL-EAAGVKTNEKGYIVVD-KYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERL 325 (450)
T ss_dssp TSCEEEESEEEECSCEEESCTTSCH-HHHTCCBCTTSCBCCC-TTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEcCEEEECCCCCcCCCCCCc-hhcCceECCCCCEeEC-CCCccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHH
Confidence 8989999999999999999864422 22566 6789999999 566789999999999987544 7899999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 326 ~~~ 328 (450)
T 1ges_A 326 FNN 328 (450)
T ss_dssp HTT
T ss_pred cCC
Confidence 863
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=271.49 Aligned_cols=299 Identities=17% Similarity=0.262 Sum_probs=203.2
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCC-eeeecC---CcccccCCCCCCCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDR-MKLHLA---KQFCELPHMPFPSRTPTFV 74 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~ 74 (381)
|+ ++||+|||||++|+++|..|++.|.+|+|||++ .+||.|... +.+. +..... ........+.+... ....
T Consensus 1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~ 78 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS-GGTL 78 (463)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC----C
T ss_pred CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccC-CCCc
Confidence 54 599999999999999999999999999999998 677765421 1110 000000 00000000000000 0011
Q ss_pred CHHHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 75 PRISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 75 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
....+. ..+...+++.+++++.++ +..++ . .. |.+ ++ ..+.||+||+|||+.|..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~--~--~~--v~~-~g-----~~~~~d~lviAtGs~p~~p 145 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGH-ARFVD--A--HT--IEV-EG-----QRLSADHIVIATGGRPIVP 145 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEE--T--TE--EEE-TT-----EEEEEEEEEECCCEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEcc--C--CE--EEE-CC-----EEEEcCEEEECCCCCCCCC
Confidence 222222 223344456678876664 33332 2 33 555 43 5799999999999999988
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++||.+. +.+..++..... .+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .+++..+.++...+
T Consensus 146 ~i~G~~~----~~~~~~~~~~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~-~~l~~~~~~~~~~l------ 213 (463)
T 2r9z_A 146 RLPGAEL----GITSDGFFALQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALED-RLLFQFDPLLSATL------ 213 (463)
T ss_dssp SCTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHH------
T ss_pred CCCCccc----eecHHHHhhhhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-ccccccCHHHHHHH------
Confidence 8888642 233333322222 47899999999999999999999999999999998 56665444333322
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcC
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFEN 297 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~ 297 (381)
.+.+++.+++++.+ +++++.+ .+.+++
T Consensus 214 -----------------------------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~ 246 (463)
T 2r9z_A 214 -----------------------------------------------AENMHAQGIETHLEFAVAALERDAQGTTLVAQD 246 (463)
T ss_dssp -----------------------------------------------HHHHHHTTCEEESSCCEEEEEEETTEEEEEETT
T ss_pred -----------------------------------------------HHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeC
Confidence 33445678888887 7777642 467788
Q ss_pred Cc-EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 298 GK-IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 298 g~-~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
|+ ++++|.|++|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+.+|++|
T Consensus 247 G~~~i~~D~vv~a~G~~p~~~~l~~-~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i 324 (463)
T 2r9z_A 247 GTRLEGFDSVIWAVGRAPNTRDLGL-EAAGIEVQSNGMVPTD-AYQNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERL 324 (463)
T ss_dssp CCEEEEESEEEECSCEEESCTTSCH-HHHTCCCCTTSCCCCC-TTSBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCEEEECCCCCcCCCCCCc-hhcCCccCCCCCEeEC-CCCccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHH
Confidence 98 8999999999999999864422 22556 6789999999 566789999999999987544 7899999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 325 ~g~ 327 (463)
T 2r9z_A 325 FDG 327 (463)
T ss_dssp HSC
T ss_pred cCC
Confidence 863
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=271.62 Aligned_cols=306 Identities=15% Similarity=0.131 Sum_probs=208.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCe-eeecC---------CcccccCC-CCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRM-KLHLA---------KQFCELPH-MPFPSRT 70 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~-~~~~~---------~~~~~~~~-~~~~~~~ 70 (381)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +.+.. ..... ...++++. .....++
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS 81 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 5899999999999999999999999999999998888866431 11100 00000 00001000 0000000
Q ss_pred CCCCC-HH----HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 71 PTFVP-RI----SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 71 ~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
..... .. .+...+...+++.+++++.++.+ .+ +. +.+.+.+.++ +...+.||+||+|||+.|..|++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i--~~--~~~~v~~~~G---~~~~~~~d~lviAtG~~p~~p~~ 153 (468)
T 2qae_A 82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FE--TA--HSIRVNGLDG---KQEMLETKKTIIATGSEPTELPF 153 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EE--ET--TEEEEEETTS---CEEEEEEEEEEECCCEEECCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--eC--CEEEEEecCC---ceEEEEcCEEEECCCCCcCCCCC
Confidence 10000 11 12223455666778888777644 23 22 4555655433 23579999999999999988888
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHH
Q 035902 146 PGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKL 225 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~ 225 (381)
+|.+. . .++++.+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 154 ~g~~~-~-~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~~~~l-------- 221 (468)
T 2qae_A 154 LPFDE-K-VVLSSTGALALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP-RCAPTLDEDVTNAL-------- 221 (468)
T ss_dssp BCCCS-S-SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHH--------
T ss_pred CCCCc-C-ceechHHHhhccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC-cccccCCHHHHHHH--------
Confidence 88653 1 2455544433333 57999999999999999999999999999999998 67776554433222
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhh-cCCCeEEccC--cceEeCC----eEEEc--
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKI-RKGEIQVFPS--ITSINRN----EVEFE-- 296 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~--v~~v~~~----~v~~~-- 296 (381)
.+.+ ++.+++++.+ |++++.+ .+.++
T Consensus 222 ---------------------------------------------~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~ 256 (468)
T 2qae_A 222 ---------------------------------------------VGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGK 256 (468)
T ss_dssp ---------------------------------------------HHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC
T ss_pred ---------------------------------------------HHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcC
Confidence 3445 5678888887 7777653 24454
Q ss_pred CC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccc-ccc---CccHHHHHHH
Q 035902 297 NG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRT-GLH---GISIDAKNIA 369 (381)
Q Consensus 297 ~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-~~~---~a~~~a~~~a 369 (381)
+| +++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|||||+|||++ .+. .|..||+.+|
T Consensus 257 ~g~~~~i~~D~vv~a~G~~p~~~~l~l-~~~gl~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa 334 (468)
T 2qae_A 257 NGKRETVTCEALLVSVGRRPFTGGLGL-DKINVAKNERGFVKIG-DHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACA 334 (468)
T ss_dssp ---EEEEEESEEEECSCEEECCTTSCH-HHHTCCBCTTSCBCCC-TTSBCSSTTEEECGGGBSSSCSCHHHHHHHHHHHH
T ss_pred CCceEEEECCEEEECCCcccCCCCCCc-hhcCCccCCCCCEeEC-CCcccCCCCEEEeeccCCCCCccHhHHHHHHHHHH
Confidence 66 68999999999999999865322 22556 6778999999 567789999999999998 544 7899999999
Q ss_pred HHhhhc
Q 035902 370 NDINLA 375 (381)
Q Consensus 370 ~~i~~~ 375 (381)
++|.+.
T Consensus 335 ~~i~~~ 340 (468)
T 2qae_A 335 EILAGK 340 (468)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 999874
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=277.42 Aligned_cols=299 Identities=16% Similarity=0.186 Sum_probs=202.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCee-eecC---CcccccCCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMK-LHLA---KQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.. .+.+... .... ........+.++.. .......
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 97 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC-EGKFNWR 97 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCC-CCCCCHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCC-CCccCHH
Confidence 589999999999999999999999999999976 57775432 1111100 0000 00000011111111 1122222
Q ss_pred HHHH-----------HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC---
Q 035902 78 SFIN-----------YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP--- 143 (381)
Q Consensus 78 ~~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~--- 143 (381)
.+.+ .+...+++.++++..+. +..++ . ..+.+. .++ .+++||+||+|||+.|..|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~--~--~~~~v~-~~g-----~~~~~d~lviAtG~~p~~p~~~ 166 (478)
T 3dk9_A 98 VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTS--D--PKPTIE-VSG-----KKYTAPHILIATGGMPSTPHES 166 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECS--C--SSCEEE-ETT-----EEEECSCEEECCCEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEee--C--CeEEEE-ECC-----EEEEeeEEEEccCCCCCCCCcC
Confidence 3222 33344455566665543 22221 1 224455 333 6799999999999999888
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
+++|.+. ..++..+..... .+++++|||+|.+|+|+|..+++.|.+|+++.|.+ .+++..+.++...+
T Consensus 167 ~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~~~~~------ 234 (478)
T 3dk9_A 167 QIPGASL----GITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNC------ 234 (478)
T ss_dssp TSTTGGG----SBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHHHHH------
T ss_pred CCCCCce----eEchHHhhchhh-cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC-ccccccCHHHHHHH------
Confidence 8888652 233333333333 48999999999999999999999999999999988 66676665544433
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e----EEE
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E----VEF 295 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~----v~~ 295 (381)
.+.+++.+|+++.+ ++++..+ + +.+
T Consensus 235 -----------------------------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 267 (478)
T 3dk9_A 235 -----------------------------------------------TEELENAGVEVLKFSQVKEVKKTLSGLEVSMVT 267 (478)
T ss_dssp -----------------------------------------------HHHHHHTTCEEETTEEEEEEEECSSSEEEEEEE
T ss_pred -----------------------------------------------HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEE
Confidence 33446678888887 7777632 3 445
Q ss_pred cC-------CcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHH
Q 035902 296 EN-------GKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISID 364 (381)
Q Consensus 296 ~~-------g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~ 364 (381)
.+ |+++++|.|++|+|++|++..+.. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..|
T Consensus 268 ~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~A~~~ 345 (478)
T 3dk9_A 268 AVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSL-NKLGIQTDDKGHIIVD-EFQNTNVKGIYAVGDVCGKALLTPVAIAA 345 (478)
T ss_dssp CCTTSCCEEEEEEEESEEEECSCEEESCTTSCG-GGGTCCBCTTCCBCCC-TTCBCSSTTEEECGGGGCSSCCHHHHHHH
T ss_pred ccCCCCcccceEEEcCEEEEeeccccCCCCCCc-hhcCCeeCCCCCEeeC-CCcccCCCCEEEEEecCCCCccHhHHHHH
Confidence 54 257899999999999999964422 33666 7889999999 567789999999999997655 88999
Q ss_pred HHHHHHHhhhc
Q 035902 365 AKNIANDINLA 375 (381)
Q Consensus 365 a~~~a~~i~~~ 375 (381)
|+.+|++|.+.
T Consensus 346 g~~aa~~i~~~ 356 (478)
T 3dk9_A 346 GRKLAHRLFEY 356 (478)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHcCC
Confidence 99999999875
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=277.78 Aligned_cols=305 Identities=15% Similarity=0.184 Sum_probs=203.8
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCe-eeecCCcccccCCCCCCCCC---CCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRM-KLHLAKQFCELPHMPFPSRT---PTFV 74 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~ 74 (381)
|+ ++||+|||||++|+++|..|++.|.+|+|||++ .+||.|.+. +++.. .......++.....++...+ ....
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 79 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence 53 599999999999999999999999999999998 678876531 11100 00000000000011110000 1111
Q ss_pred CHHHHH-------HHHH-----HHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 75 PRISFI-------NYVD-----NYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 75 ~~~~~~-------~~~~-----~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
....+. +++. +.+++. +++++.+ ++..++ . +.+.|.+.++ +...++||+||+|||+.|.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~--~--~~~~v~~~~g---~~~~~~~d~lviAtGs~p~ 151 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKD--D--QSLTVRLNEG---GERVVMFDRCLVATGASPA 151 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEE--T--TEEEEEETTS---SEEEEECSEEEECCCEEEC
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEcc--C--CEEEEEeCCC---ceEEEEeCEEEEeCCCCCC
Confidence 222222 2222 233334 6665544 344443 2 4555665443 2357999999999999999
Q ss_pred CCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhC
Q 035902 142 IPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFL 221 (381)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l 221 (381)
.|+++|.+.. .+++..+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++| .+.++...+
T Consensus 152 ~p~i~G~~~~--~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~-~~~~~~~~l---- 222 (467)
T 1zk7_A 152 VPPIPGLKES--PYWTSTEALASDT-IPERLAVIGSSVVALELAQAFARLGSKVTVLARNT-LFFR-EDPAIGEAV---- 222 (467)
T ss_dssp CCCCTTTTTS--CCBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTT-SCHHHHHHH----
T ss_pred CCCCCCCCcC--ceecHHHHhcccc-cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC-ccCC-CCHHHHHHH----
Confidence 9999987643 1334333333222 58999999999999999999999999999999998 6666 444333333
Q ss_pred cHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEE
Q 035902 222 PCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEF 295 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~ 295 (381)
.+.+++.+++++.+ |+++..+ . +.+
T Consensus 223 -------------------------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~ 253 (467)
T 1zk7_A 223 -------------------------------------------------TAAFRAEGIEVLEHTQASQVAHMDGEFVLTT 253 (467)
T ss_dssp -------------------------------------------------HHHHHHTTCEEETTCCEEEEEEETTEEEEEE
T ss_pred -------------------------------------------------HHHHHhCCCEEEcCCEEEEEEEeCCEEEEEE
Confidence 33445677888876 7777542 2 444
Q ss_pred cCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHH
Q 035902 296 ENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIAND 371 (381)
Q Consensus 296 ~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~ 371 (381)
+ +.++++|.||+|+|.+|+++.+.. +..++ ++++|++.+| +..+++.|+||++|||+..+. .|..||+.+|.+
T Consensus 254 ~-~~~i~aD~Vv~a~G~~p~~~~l~l-~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~ 330 (467)
T 1zk7_A 254 T-HGELRADKLLVATGRTPNTRSLAL-DAAGVTVNAQGAIVID-QGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAIN 330 (467)
T ss_dssp T-TEEEEESEEEECSCEEESCTTSCG-GGGTCCBCTTSCBCCC-TTCBCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHH
T ss_pred C-CcEEEcCEEEECCCCCcCCCcCCc-hhcCCcCCCCCCEEEC-CCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHH
Confidence 4 568999999999999999865422 33566 6778999998 567789999999999988754 889999999999
Q ss_pred hhhc
Q 035902 372 INLA 375 (381)
Q Consensus 372 i~~~ 375 (381)
|.+.
T Consensus 331 i~~~ 334 (467)
T 1zk7_A 331 MTGG 334 (467)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 9864
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=274.66 Aligned_cols=297 Identities=14% Similarity=0.144 Sum_probs=204.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeee-e---cCCcccccCCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKL-H---LAKQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
++||+|||||++|+++|+.|++.|.+|+|||+ ..+||.|.. .+.+...+ . ........+.+.+....+ .....
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 82 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGES-RFDWA 82 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCC-EECHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCC-CcCHH
Confidence 48999999999999999999999999999999 667775532 11110000 0 000000000010000000 11111
Q ss_pred -----------HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEE-eecCCCceEEEEeCEEEEccCCCCC-CCC
Q 035902 78 -----------SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVA-KNTALDAYEEYVARYLVVATGENGL-IPE 144 (381)
Q Consensus 78 -----------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~-~~~~~~~~~~~~~d~vIlAtG~~~~-~~~ 144 (381)
.+..++...+++.++++..+ ++..+ + ... +.+ .++ ..+.||+||+|||+.|. .|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i---~-~~~--v~~~~~~-----~~~~~d~lviAtG~~p~~~p~ 150 (463)
T 4dna_A 83 KLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELA---G-PNT--VKLLASG-----KTVTAERIVIAVGGHPSPHDA 150 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEES---S-SSE--EEETTTT-----EEEEEEEEEECCCEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEe---e-CCE--EEEecCC-----eEEEeCEEEEecCCCcccCCC
Confidence 23334455556667776655 33322 1 133 555 233 68999999999999999 888
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
++|.+. +.++.++.... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .+++..+.++...+
T Consensus 151 i~G~~~----~~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~-~~l~~~~~~~~~~l------- 217 (463)
T 4dna_A 151 LPGHEL----CITSNEAFDLP-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK-EILSRFDQDMRRGL------- 217 (463)
T ss_dssp STTGGG----CBCHHHHTTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHH-------
T ss_pred CCCccc----cccHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHHHHHH-------
Confidence 888653 23333333322 358999999999999999999999999999999998 56666554443333
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEE-Ec
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVE-FE 296 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~-~~ 296 (381)
.+.+++.+++++.+ |+++..+ .+. ++
T Consensus 218 ----------------------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~ 251 (463)
T 4dna_A 218 ----------------------------------------------HAAMEEKGIRILCEDIIQSVSADADGRRVATTMK 251 (463)
T ss_dssp ----------------------------------------------HHHHHHTTCEEECSCCEEEEEECTTSCEEEEESS
T ss_pred ----------------------------------------------HHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcC
Confidence 34446678888886 7777653 466 77
Q ss_pred CCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHh
Q 035902 297 NGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDI 372 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i 372 (381)
+|+ +++|.||+|+|++|++..+.. +..++ ++++|++.+| +.++++.|||||+|||++.+. .|..||+.+|++|
T Consensus 252 ~g~-i~aD~Vv~a~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i 328 (463)
T 4dna_A 252 HGE-IVADQVMLALGRMPNTNGLGL-EAAGVRTNELGAIIVD-AFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETE 328 (463)
T ss_dssp SCE-EEESEEEECSCEEESCTTSST-GGGTCCBCTTSCBCCC-TTCBCSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHH
T ss_pred CCe-EEeCEEEEeeCcccCCCCCCc-cccCceECCCCCEeEC-cCCCCCCCCEEEEEecCCCCCChHHHHHHHHHHHHHH
Confidence 887 999999999999999865422 33666 7889999999 567789999999999998654 8899999999999
Q ss_pred hhc
Q 035902 373 NLA 375 (381)
Q Consensus 373 ~~~ 375 (381)
.+.
T Consensus 329 ~g~ 331 (463)
T 4dna_A 329 YKN 331 (463)
T ss_dssp HSS
T ss_pred cCC
Confidence 874
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=272.56 Aligned_cols=308 Identities=16% Similarity=0.185 Sum_probs=206.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC------CCCcCCC-CCCCee-eecC---------CcccccCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS------ASLWKKR-AYDRMK-LHLA---------KQFCELPHM 64 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~------g~~~~~~-~~~~~~-~~~~---------~~~~~~~~~ 64 (381)
+++||+|||||++|+++|+.|++.|.+|+|||++... ||.|... +.+... .... ...+++...
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 4699999999999999999999999999999998744 4433211 111000 0000 000011000
Q ss_pred CCCCCCCCCCC-HHH----HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 65 PFPSRTPTFVP-RIS----FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 65 ~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+++.... ... +...+....++.+++++.+..+. .+. ..+.+...++ +...+.||+||+|||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~--~~~~v~~~~g---~~~~~~~d~lvlAtG~~ 153 (476)
T 3lad_A 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL---LAG--KKVEVTAADG---SSQVLDTENVILASGSK 153 (476)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE---CST--TCEEEECTTS---CEEEECCSCEEECCCEE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecC--CEEEEEcCCC---ceEEEEcCEEEEcCCCC
Confidence 00000010000 111 22233345556677776554332 222 4555554333 33679999999999999
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHh
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLK 219 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~ 219 (381)
|..|+.++.+. ..++++.+..... ..+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .++|..+.++...+
T Consensus 154 p~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l-- 227 (476)
T 3lad_A 154 PVEIPPAPVDQ--DVIVDSTGALDFQ-NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD-KFLPAVDEQVAKEA-- 227 (476)
T ss_dssp ECCCTTSCCCS--SSEEEHHHHTSCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHHHHHH--
T ss_pred CCCCCCCCCCc--ccEEechhhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcccCHHHHHHH--
Confidence 87665544332 2345554444333 368999999999999999999999999999999998 67776555444333
Q ss_pred hCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eE
Q 035902 220 FLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EV 293 (381)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v 293 (381)
.+.+++.+|+++.+ +++++.+ .+
T Consensus 228 ---------------------------------------------------~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v 256 (476)
T 3lad_A 228 ---------------------------------------------------QKILTKQGLKILLGARVTGTEVKNKQVTV 256 (476)
T ss_dssp ---------------------------------------------------HHHHHHTTEEEEETCEEEEEEECSSCEEE
T ss_pred ---------------------------------------------------HHHHHhCCCEEEECCEEEEEEEcCCEEEE
Confidence 33446678888877 7777643 35
Q ss_pred EEcCC---cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHH
Q 035902 294 EFENG---KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAK 366 (381)
Q Consensus 294 ~~~~g---~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~ 366 (381)
.+.++ +++++|.||+|+|++|+++.++. +..++ ++++|++.+| +.++++.|||||+|||.+.+. .|..||+
T Consensus 257 ~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~-~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~ 334 (476)
T 3lad_A 257 KFVDAEGEKSQAFDKLIVAVGRRPVTTDLLA-ADSGVTLDERGFIYVD-DYCATSVPGVYAIGDVVRGAMLAHKASEEGV 334 (476)
T ss_dssp EEESSSEEEEEEESEEEECSCEEECCTTCCS-SCCSCCBCTTSCBCCC-TTSBCSSTTEEECGGGSSSCCCHHHHHHHHH
T ss_pred EEEeCCCcEEEECCEEEEeeCCcccCCCCCc-cccCccccCCCCEeeC-CCcccCCCCEEEEEccCCCcccHHHHHHHHH
Confidence 66654 68999999999999999976534 44676 7888999999 567789999999999997654 8999999
Q ss_pred HHHHHhhhcc
Q 035902 367 NIANDINLAL 376 (381)
Q Consensus 367 ~~a~~i~~~l 376 (381)
.+|++|.+..
T Consensus 335 ~aa~~i~g~~ 344 (476)
T 3lad_A 335 VVAERIAGHK 344 (476)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHhcCCC
Confidence 9999998754
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=272.93 Aligned_cols=307 Identities=14% Similarity=0.154 Sum_probs=206.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHh-CCCCeEEEe--------cCCCCCCCcCC-CCCCCeeeecCCc----ccccCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNN-LSVPNIILE--------REDCSASLWKK-RAYDRMKLHLAKQ----FCELPHMPF 66 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~-~g~~v~lie--------~~~~~g~~~~~-~~~~~~~~~~~~~----~~~~~~~~~ 66 (381)
|.++||+|||||++|+++|+.|++ .|.+|+||| +...+||.|.. .+++...+..... ......+.+
T Consensus 1 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 80 (490)
T 1fec_A 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW 80 (490)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred CccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence 456999999999999999999999 999999999 35567776532 1111100000000 000000000
Q ss_pred CCCCC-CCCCHHHHH-----------HHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeec--CCCc-eEEEEeC
Q 035902 67 PSRTP-TFVPRISFI-----------NYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNT--ALDA-YEEYVAR 130 (381)
Q Consensus 67 ~~~~~-~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~--~~~~-~~~~~~d 130 (381)
..... ......++. ..+...+++. +++++.++ +..++ . +. +.+.+. ..++ ...+.||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~--~--~~--v~v~~~~~~~g~~~~~~~~d 153 (490)
T 1fec_A 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQD--N--HT--VLVRESADPNSAVLETLDTE 153 (490)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEE--T--TE--EEEESSSSTTSCEEEEEEEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEee--C--CE--EEEEeeccCCCCceEEEEcC
Confidence 00000 001112222 2334445566 77776664 44443 2 34 444310 0111 1579999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhC---CCeeEEEEecCcceec
Q 035902 131 YLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSC---GACTSIVVRGPVHVLT 207 (381)
Q Consensus 131 ~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~---g~~v~~i~r~~~~~~p 207 (381)
+||+|||+.|..|+++|.+. +.+..++.... ..+++++|||+|.+|+|+|..+.+. |.+|+++.|.+ .++|
T Consensus 154 ~lviAtGs~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~-~~l~ 227 (490)
T 1fec_A 154 YILLATGSWPQHLGIEGDDL----CITSNEAFYLD-EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD-MILR 227 (490)
T ss_dssp EEEECCCEEECCCCSBTGGG----CBCHHHHTTCS-SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS-SSST
T ss_pred EEEEeCCCCCCCCCCCCccc----eecHHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCC-Cccc
Confidence 99999999999888888642 23333333322 2579999999999999999999999 99999999998 6777
Q ss_pred hhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--c
Q 035902 208 REIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--I 285 (381)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v 285 (381)
..+.++...+ .+.+++.+|+++.+ |
T Consensus 228 ~~d~~~~~~l-----------------------------------------------------~~~l~~~GV~i~~~~~v 254 (490)
T 1fec_A 228 GFDSELRKQL-----------------------------------------------------TEQLRANGINVRTHENP 254 (490)
T ss_dssp TSCHHHHHHH-----------------------------------------------------HHHHHHTTEEEEETCCE
T ss_pred ccCHHHHHHH-----------------------------------------------------HHHHHhCCCEEEeCCEE
Confidence 6554443333 33446678888877 7
Q ss_pred ceEeCC-----eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc
Q 035902 286 TSINRN-----EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 286 ~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
+++..+ .+.+++|+++++|.||+|+|++|+++.+.. +..++ ++++|++.+| +.++++.|+|||+|||.+.+.
T Consensus 255 ~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l-~~~gl~~~~~G~I~Vd-~~~~t~~~~IyA~GD~~~~~~ 332 (490)
T 1fec_A 255 AKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQL-EKAGVEVAKNGAIKVD-AYSKTNVDNIYAIGDVTDRVM 332 (490)
T ss_dssp EEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCG-GGGTCCBCTTSCBCCC-TTCBCSSTTEEECGGGGCSCC
T ss_pred EEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCc-hhcCccCCCCCCEEEC-CCCccCCCCEEEEeccCCCcc
Confidence 777643 466788889999999999999999864422 33666 7778999999 567789999999999998644
Q ss_pred ---CccHHHHHHHHHhhhc
Q 035902 360 ---GISIDAKNIANDINLA 375 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~ 375 (381)
.|..||+.+|++|.+.
T Consensus 333 l~~~A~~~g~~aa~~i~g~ 351 (490)
T 1fec_A 333 LTPVAINEGAAFVDTVFAN 351 (490)
T ss_dssp CHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHhcCC
Confidence 8899999999999863
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=267.74 Aligned_cols=284 Identities=16% Similarity=0.165 Sum_probs=201.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCC--eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVP--NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~--v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+ ++|+|||||+||+++|..|+++|.+ |+|||+++..+.. .... +..+.... .. +..+ ...
T Consensus 1 M~-~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~--~~~l-------~~~~~~g~-~~-~~~~--~~~--- 63 (410)
T 3ef6_A 1 MA-THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD--RPSL-------SKAVLDGS-LE-RPPI--LAE--- 63 (410)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC--SGGG-------GTHHHHTS-SS-SCCB--SSC---
T ss_pred CC-CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC--Cccc-------cHHHhCCC-CC-HHHh--cCC---
Confidence 63 6899999999999999999999987 9999998865421 0000 00000000 00 0010 011
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
.+.+++.+++++++++|..++... .. |.+.++ +.+.||+||+|||+.|..|++||.+. . .+++.
T Consensus 64 -----~~~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~g-----~~~~~d~lvlAtG~~p~~~~ipG~~~-~-~v~~~ 127 (410)
T 3ef6_A 64 -----ADWYGEARIDMLTGPEVTALDVQT--RT--ISLDDG-----TTLSADAIVIATGSRARTMALPGSQL-P-GVVTL 127 (410)
T ss_dssp -----TTHHHHTTCEEEESCCEEEEETTT--TE--EEETTS-----CEEECSEEEECCCEEECCCCCTTTTS-T-TEECC
T ss_pred -----HHHHHHCCCEEEeCCEEEEEECCC--CE--EEECCC-----CEEECCEEEEccCCcccCCCCCCccc-c-ceEEe
Confidence 123445689999999999998754 33 777766 67999999999999999999998753 2 23322
Q ss_pred CCCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 159 SKYENG-----GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 159 ~~~~~~-----~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
....+. ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++++ .+.++...+
T Consensus 128 ~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~-~~l~~~~~~~~~~~l--------------- 191 (410)
T 3ef6_A 128 RTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGD-ELLVRVLGRRIGAWL--------------- 191 (410)
T ss_dssp CSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSHHHHCHHHHHHH---------------
T ss_pred ccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-ccchhhcCHHHHHHH---------------
Confidence 221111 11248999999999999999999999999999999998 55543 222222222
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEE
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAI 306 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~v 306 (381)
.+.+++.+|+++.+ |+++..+ .+.+++|+++++|.|
T Consensus 192 --------------------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~V 233 (410)
T 3ef6_A 192 --------------------------------------RGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSA 233 (410)
T ss_dssp --------------------------------------HHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEE
T ss_pred --------------------------------------HHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEE
Confidence 34446678888877 8888765 588899999999999
Q ss_pred EEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc------------cCccHHHHHHHHHhhh
Q 035902 307 IFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL------------HGISIDAKNIANDINL 374 (381)
Q Consensus 307 i~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~------------~~a~~~a~~~a~~i~~ 374 (381)
|+|+|++|+++. +. . .++-..+| +.+| +.++++.|+||++|||+..+ ..|..||+.+|++|.+
T Consensus 234 v~a~G~~p~~~l-~~-~-~gl~~~~g-i~vd-~~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 308 (410)
T 3ef6_A 234 LICVGAEPADQL-AR-Q-AGLACDRG-VIVD-HCGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILG 308 (410)
T ss_dssp EECSCEEECCHH-HH-H-TTCCBSSS-EECC-TTSBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTT
T ss_pred EEeeCCeecHHH-HH-h-CCCccCCe-EEEc-cCeeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcC
Confidence 999999999854 33 3 56532355 7887 56678999999999997643 3789999999999987
Q ss_pred cc
Q 035902 375 AL 376 (381)
Q Consensus 375 ~l 376 (381)
.-
T Consensus 309 ~~ 310 (410)
T 3ef6_A 309 KN 310 (410)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=273.89 Aligned_cols=298 Identities=15% Similarity=0.159 Sum_probs=204.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeee-e---cCCcccccCCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKL-H---LAKQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
++||+|||||++|+++|+.|++.|.+|+|||+ ..+||.|.. .+++...+ . ....+.....+.+....+ .....
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~ 103 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADP-IFNWE 103 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCC-EECHH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCC-ccCHH
Confidence 58999999999999999999999999999999 567775532 11110000 0 000000000110000001 11111
Q ss_pred -----------HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCEEEEccCCCCC-CCC
Q 035902 78 -----------SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARYLVVATGENGL-IPE 144 (381)
Q Consensus 78 -----------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~vIlAtG~~~~-~~~ 144 (381)
.+...+...+++.++++..+ .+..++ . .. +.+. ++ ..+.||+||+|||+.|. .|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~--~~--v~v~~~~-----~~~~~d~lviAtG~~p~~~p~ 171 (484)
T 3o0h_A 104 KLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--E--HT--LELSVTG-----ERISAEKILIATGAKIVSNSA 171 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--T--TE--EEETTTC-----CEEEEEEEEECCCEEECCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--C--CE--EEEecCC-----eEEEeCEEEEccCCCcccCCC
Confidence 23334455556667776555 343333 2 33 5553 33 57999999999999998 888
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH
Q 035902 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK 224 (381)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~ 224 (381)
++|.+. +.+..++.... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .+++..+.++...+
T Consensus 172 i~G~~~----~~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l------- 238 (484)
T 3o0h_A 172 IKGSDL----CLTSNEIFDLE-KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD-LILRNFDYDLRQLL------- 238 (484)
T ss_dssp CBTGGG----SBCTTTGGGCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHH-------
T ss_pred CCCccc----cccHHHHHhHH-hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC-ccccccCHHHHHHH-------
Confidence 888652 23444433333 358999999999999999999999999999999998 66666554443333
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCC
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENG 298 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g 298 (381)
.+.+++.+++++.+ |+++..+ .+.+++|
T Consensus 239 ----------------------------------------------~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g 272 (484)
T 3o0h_A 239 ----------------------------------------------NDAMVAKGISIIYEATVSQVQSTENCYNVVLTNG 272 (484)
T ss_dssp ----------------------------------------------HHHHHHHTCEEESSCCEEEEEECSSSEEEEETTS
T ss_pred ----------------------------------------------HHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCC
Confidence 33445567888876 7777654 4778899
Q ss_pred cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 299 KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 299 ~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
+++++|.||+|+|++|++..+.. +..++ ++++|++.+| +..+++.|||||+|||.+.+. .|..||+.+|++|.+
T Consensus 273 ~~i~aD~Vi~A~G~~p~~~~l~l-~~~g~~~~~~G~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 350 (484)
T 3o0h_A 273 QTICADRVMLATGRVPNTTGLGL-ERAGVKVNEFGAVVVD-EKMTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFE 350 (484)
T ss_dssp CEEEESEEEECCCEEECCTTCCH-HHHTCCBCTTSCBCCC-TTSBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC
T ss_pred cEEEcCEEEEeeCCCcCCCCCCh-hhcCceECCCCCEeEC-CCCCCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999865422 22566 7888999999 567789999999999998654 889999999999987
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 351 ~ 351 (484)
T 3o0h_A 351 N 351 (484)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=270.80 Aligned_cols=301 Identities=17% Similarity=0.180 Sum_probs=205.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-CCCCe-eeecCC---cccccCCCCCCCCCCCCCCHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR-AYDRM-KLHLAK---QFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~-~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (381)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|... +.+.. ...... .... ..+..+.. ....+..
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~-~~~~~~~ 78 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVK-GVELDLP 78 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEEC-CEEECHH
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccC-CCccCHH
Confidence 3799999999999999999999999999999998888865431 11100 000000 0000 00000000 0001112
Q ss_pred H-----------HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 78 S-----------FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 78 ~-----------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
. +...+.+.+++.+++++.++.+. .+ .+.+.|.+ ++ ..+.||+||+|||+.|..|+++
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~--~~~~~v~~-~g-----~~~~~d~lviAtG~~p~~~~~~ 147 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARF---LS--ERKVLVEE-TG-----EELEARYILIATGSAPLIPPWA 147 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---SS--SSEEEETT-TC-----CEEEEEEEEECCCEEECCCTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ec--CCeEEEee-CC-----EEEEecEEEECCCCCCCCCCCC
Confidence 2 22223455666788887766432 22 24444433 33 5799999999999999888888
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHH
Q 035902 147 GLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLV 226 (381)
Q Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~ 226 (381)
|.+.. .++++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.++...+.
T Consensus 148 g~~~~--~v~~~~~~~~~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~-~~l~~~~~~~~~~l~-------- 215 (455)
T 2yqu_A 148 QVDYE--RVVTSTEALSFPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD-RILPTMDLEVSRAAE-------- 215 (455)
T ss_dssp CCCSS--SEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHHHHHH--------
T ss_pred CCCcC--cEechHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC-ccccccCHHHHHHHH--------
Confidence 76531 2455554443333 57999999999999999999999999999999998 667765544443332
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEcCCcE
Q 035902 227 DFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFENGKI 300 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~~g~~ 300 (381)
+.+++.+++++.+ |++++.+ . +.+++|++
T Consensus 216 ---------------------------------------------~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~ 250 (455)
T 2yqu_A 216 ---------------------------------------------RVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEV 250 (455)
T ss_dssp ---------------------------------------------HHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCE
T ss_pred ---------------------------------------------HHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeE
Confidence 3334557778776 7777642 3 44568889
Q ss_pred eeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 301 EEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 301 ~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
+++|.||+|+|.+|+.+.+.. +..++ ++++|++.+| +.++++.|+||++|||.+.+. .|..||+.+|++|.+.
T Consensus 251 i~~D~vv~A~G~~p~~~~l~~-~~~g~~~~~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 251 LEADRVLVAVGRRPYTEGLSL-ENAGLSTDERGRIPVD-EHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp EEESEEEECSCEEECCTTCCG-GGGTCCCCTTSCCCCC-TTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred EEcCEEEECcCCCcCCCCCCh-hhcCCccCCCCcEeEC-CCcccCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCC
Confidence 999999999999999865322 33566 5678999998 456788999999999988755 7899999999999873
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=268.10 Aligned_cols=284 Identities=18% Similarity=0.174 Sum_probs=202.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCC--eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVP--NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~--v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
++||+|||||++|+++|..|+++|.+ |+|||+++..+.. .. . .+..+ . .......++.
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~--~~-----~--l~~~~-----~------~~~~~~~~~~ 68 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYE--RP-----P--LSKEY-----L------AREKTFERIC 68 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBC--SG-----G--GGTTT-----T------TTSSCSGGGB
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcC--cc-----c--CCHHH-----H------cCCCCHHHhc
Confidence 47999999999999999999999986 9999998755421 00 0 00000 0 0001111222
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~ 160 (381)
....+.+++.+++++.++++..++... .. |.+.++ ..+.||+||+|||+.|..|+++|.+. .+ +.....
T Consensus 69 ~~~~~~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~g-----~~~~~d~lvlAtG~~~~~~~i~g~~~-~~-v~~~~~ 137 (415)
T 3lxd_A 69 IRPAQFWEDKAVEMKLGAEVVSLDPAA--HT--VKLGDG-----SAIEYGKLIWATGGDPRRLSCVGADL-AG-VHAVRT 137 (415)
T ss_dssp SSCHHHHHHTTEEEEETCCEEEEETTT--TE--EEETTS-----CEEEEEEEEECCCEECCCCBTTSSCC-BT-EECCCS
T ss_pred cCCHHHHHHCCcEEEeCCEEEEEECCC--CE--EEECCC-----CEEEeeEEEEccCCccCCCCCCCccc-cC-EEEEcC
Confidence 222344566789999999999997654 33 777665 68999999999999999998888653 21 222211
Q ss_pred CCCCC-----CCC-CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 161 YENGG-----KFI-GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 161 ~~~~~-----~~~-~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
..+.. ... +++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++++ ....+...
T Consensus 138 ~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~l~~~~~~~~~~~----------------- 199 (415)
T 3lxd_A 138 KEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALP-RVLARVAGEALSEF----------------- 199 (415)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTTSCHHHHHH-----------------
T ss_pred HHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-chhhhhcCHHHHHH-----------------
Confidence 11100 113 8999999999999999999999999999999998 55443 22222222
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcCCcEeeccEE
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFENGKIEEFEAI 306 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~g~~~~~D~v 306 (381)
+.+.+++.+++++.+ |+++..+ .+.+.+|+++++|.|
T Consensus 200 ------------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~V 243 (415)
T 3lxd_A 200 ------------------------------------YQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIV 243 (415)
T ss_dssp ------------------------------------HHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEE
T ss_pred ------------------------------------HHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEE
Confidence 244456678888876 8888653 478889999999999
Q ss_pred EEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc--------------cCccHHHHHHHHHh
Q 035902 307 IFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL--------------HGISIDAKNIANDI 372 (381)
Q Consensus 307 i~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~--------------~~a~~~a~~~a~~i 372 (381)
|+|+|++|+++. +. . .++-..+| +.+| +..+++.|||||+|||+..+ ..|..||+.+|++|
T Consensus 244 v~a~G~~p~~~l-~~-~-~gl~~~~g-i~vd-~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i 318 (415)
T 3lxd_A 244 IVGIGIVPCVGA-LI-S-AGASGGNG-VDVD-EFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDI 318 (415)
T ss_dssp EECSCCEESCHH-HH-H-TTCCCSSS-EECC-TTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHH
T ss_pred EECCCCccChHH-HH-h-CCCCcCCC-EEEC-CCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHh
Confidence 999999999864 33 3 56633356 8888 56678999999999997643 26889999999999
Q ss_pred hhcc
Q 035902 373 NLAL 376 (381)
Q Consensus 373 ~~~l 376 (381)
.+.-
T Consensus 319 ~g~~ 322 (415)
T 3lxd_A 319 CGAP 322 (415)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8754
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=280.82 Aligned_cols=300 Identities=16% Similarity=0.165 Sum_probs=198.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeee-ecCC---cccccCCCCCCCCCCCCCCHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKL-HLAK---QFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
+||+||||||||+++|..|++.|.+|+|||++. +||.+.+ .+.+...+ .... ....++.+.++.. ....+..+
T Consensus 9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~ 86 (492)
T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVD-RISVNGKA 86 (492)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECS-EEEECHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCC-CCccCHHH
Confidence 899999999999999999999999999999975 7775421 11111000 0000 0000011100000 01123445
Q ss_pred HHHHHHHHHHHhCCcc-----------ccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 79 FINYVDNYVSQMGINP-----------RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~-----------~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
+.+++.+..+++...+ .+..... ..+ .+.|.+.++ ..+.||+||+|||+.|..|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~---~~~---~~~v~~~~~-----~~~~~d~lViATGs~p~~p~~~~ 155 (492)
T 3ic9_A 87 VMKRIQTERDRFVGFVVESVESFDEQDKIRGFAK---FLD---EHTLQVDDH-----SQVIAKRIVIATGSRPNYPEFLA 155 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEE---EEE---TTEEEETTT-----EEEEEEEEEECCCEECCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEE---Eec---CCEEEEcCC-----cEEEeCEEEEccCCCCcCCCCCC
Confidence 5555444333321110 0111111 111 123666544 78999999999999999887655
Q ss_pred CCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 148 LGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
.. ...++++.+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.|.+ .++|..+.++...+.+
T Consensus 156 ~~--~~~v~t~~~~~~~-~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~d~~~~~~l~~-------- 223 (492)
T 3ic9_A 156 AA--GSRLLTNDNLFEL-NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSG-SVANLQDEEMKRYAEK-------- 223 (492)
T ss_dssp TT--GGGEECHHHHTTC-SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTT-CCTTCCCHHHHHHHHH--------
T ss_pred cc--CCcEEcHHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC-cccccCCHHHHHHHHH--------
Confidence 33 1234444444333 3358999999999999999999999999999999998 6667665554444333
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEc--CC-
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFE--NG- 298 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~--~g- 298 (381)
.+++. |+++.+ ++++..+ + +.+. +|
T Consensus 224 ---------------------------------------------~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~ 257 (492)
T 3ic9_A 224 ---------------------------------------------TFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQ 257 (492)
T ss_dssp ---------------------------------------------HHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCC
T ss_pred ---------------------------------------------HHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCc
Confidence 33445 777776 7777543 3 4444 67
Q ss_pred -cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhh
Q 035902 299 -KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDIN 373 (381)
Q Consensus 299 -~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~ 373 (381)
+++++|.|++|+|++|+++.+.. +..++ ++++|++.+|.+.++++.|+|||+|||.+.+. .|..||+.+|++|.
T Consensus 258 ~~~i~~D~Vi~a~G~~p~~~~l~l-~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~ 336 (492)
T 3ic9_A 258 KTTESFQYVLAATGRKANVDKLGL-ENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAG 336 (492)
T ss_dssp EEEEEESEEEECSCCEESCSSSCG-GGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHH
T ss_pred eEEEECCEEEEeeCCccCCCCCCh-hhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHc
Confidence 68999999999999999965422 33676 78899999984567789999999999988755 88999999999998
Q ss_pred hc
Q 035902 374 LA 375 (381)
Q Consensus 374 ~~ 375 (381)
+.
T Consensus 337 ~~ 338 (492)
T 3ic9_A 337 AY 338 (492)
T ss_dssp HT
T ss_pred CC
Confidence 73
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=263.50 Aligned_cols=280 Identities=15% Similarity=0.143 Sum_probs=200.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
++||+|||||++|+++|..|++.|. +|+|||++++++. ..... +..+..-.. + .. .
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~--~~~~~-------~~~~~~~~~-~--~~---~------- 64 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY--DRPPL-------SKDFMAHGD-A--EK---I------- 64 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB--CSGGG-------GTHHHHHCC-G--GG---S-------
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc--cCCCC-------CHHHhCCCc-h--hh---h-------
Confidence 4899999999999999999999988 5999999876541 11000 000000000 0 00 0
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC-CCCCCCCcceeecC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV-PGLGSFEGEYMHSS 159 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~-~g~~~~~~~~~~~~ 159 (381)
+++ .+++++++++++++|..++.+. . .|.+.++ ..+.||+||+|||+.|..|++ +|.+ .+ +++..
T Consensus 65 -~~~-~~~~~~v~~~~~~~v~~i~~~~--~--~v~~~~g-----~~~~~d~lviAtG~~~~~~~i~~G~~--~~-v~~~~ 130 (408)
T 2gqw_A 65 -RLD-CKRAPEVEWLLGVTAQSFDPQA--H--TVALSDG-----RTLPYGTLVLATGAAPRALPTLQGAT--MP-VHTLR 130 (408)
T ss_dssp -BCC-CTTSCSCEEEETCCEEEEETTT--T--EEEETTS-----CEEECSEEEECCCEEECCCGGGTTCS--SC-EEECC
T ss_pred -hHH-HHHHCCCEEEcCCEEEEEECCC--C--EEEECCC-----CEEECCEEEECCCCCCCCCCccCCCC--Cc-EEEEC
Confidence 000 2345688888998899887643 3 4777665 579999999999999998888 8875 22 33322
Q ss_pred CCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 160 KYEN-----GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 160 ~~~~-----~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
...+ .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|+ .+.++...+
T Consensus 131 ~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~l---------------- 193 (408)
T 2gqw_A 131 TLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP-RLMSRAAPATLADFV---------------- 193 (408)
T ss_dssp SHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTTSCHHHHHHH----------------
T ss_pred CHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC-cccccccCHHHHHHH----------------
Confidence 2111 111247999999999999999999999999999999998 66653 333322222
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEcCCcEeeccEEEEecC
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFENGKIEEFEAIIFATG 311 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~G 311 (381)
.+.+++.+|+++.+ +++++++.+.+++|+++++|.||+|+|
T Consensus 194 -------------------------------------~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G 236 (408)
T 2gqw_A 194 -------------------------------------ARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236 (408)
T ss_dssp -------------------------------------HHHHHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred -------------------------------------HHHHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcC
Confidence 34446678888887 888875578889999999999999999
Q ss_pred CCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhhccc
Q 035902 312 YKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINLALT 377 (381)
Q Consensus 312 ~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~~l~ 377 (381)
++|+++ ++. . .++-..+| +.+| +.++++.|+|||+|||+..+ ..|..||+.+|++|.+...
T Consensus 237 ~~p~~~-l~~-~-~gl~~~~g-i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~ 310 (408)
T 2gqw_A 237 VLANDA-LAR-A-AGLACDDG-IFVD-AYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA 310 (408)
T ss_dssp EEECCH-HHH-H-HTCCBSSS-EECC-TTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred CCccHH-HHH-h-CCCCCCCC-EEEC-CCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC
Confidence 999986 343 3 45522356 8888 56778999999999997653 1689999999999987543
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=276.82 Aligned_cols=308 Identities=13% Similarity=0.085 Sum_probs=200.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--------CCCC-CcCCCCCCC-eeeec---------CCcccccCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED--------CSAS-LWKKRAYDR-MKLHL---------AKQFCELPHM 64 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--------~~g~-~~~~~~~~~-~~~~~---------~~~~~~~~~~ 64 (381)
|||+||||||+|+.+|..+++.|.+|+|||+.. .+|| ..+..+.+. +.... ....+++..-
T Consensus 43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~~ 122 (542)
T 4b1b_A 43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFD 122 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcccC
Confidence 899999999999999999999999999999743 3555 222222211 00000 0000111000
Q ss_pred CCCCCCCCCCC-HHHH----HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 65 PFPSRTPTFVP-RISF----INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 65 ~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+|+.... ...+ ..-....+++.++++..+. ..-+ +. ....|...+ ...+.+.+++|++|||||++
T Consensus 123 ~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~-a~f~--~~--~~v~V~~~~-~~~~~~~i~a~~iiIATGs~ 196 (542)
T 4b1b_A 123 NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGL-AKLK--DK--NTVSYYLKG-DLSKEETVTGKYILIATGCR 196 (542)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEE-EEEE--ET--TEEEEEEC---CCCEEEEEEEEEEECCCEE
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEc--CC--CcceEeecc-cCCceEEEeeeeEEeccCCC
Confidence 00001111111 1111 1122334455566654332 2111 11 333333322 12234789999999999999
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHh
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLK 219 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~ 219 (381)
|..|+.++... ..++++.+.....+ .|++++|||||++|+|+|..++++|.+||++.|. .++|.++.++...+.+
T Consensus 197 P~~P~~~~~~~--~~~~ts~~~l~l~~-lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~--~~L~~~D~ei~~~l~~ 271 (542)
T 4b1b_A 197 PHIPDDVEGAK--ELSITSDDIFSLKK-DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--IVLRGFDQQCAVKVKL 271 (542)
T ss_dssp ECCCSSSBTHH--HHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS--CSSTTSCHHHHHHHHH
T ss_pred CCCCCcccCCC--ccccCchhhhcccc-CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc--ccccccchhHHHHHHH
Confidence 99886443321 22455555555444 6899999999999999999999999999999874 5678888877766655
Q ss_pred hCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eE
Q 035902 220 FLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EV 293 (381)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v 293 (381)
.| ++.+++++.+ ++++... .+
T Consensus 272 ~l-----------------------------------------------------~~~gi~~~~~~~v~~~~~~~~~~~v 298 (542)
T 4b1b_A 272 YM-----------------------------------------------------EEQGVMFKNGILPKKLTKMDDKILV 298 (542)
T ss_dssp HH-----------------------------------------------------HHTTCEEEETCCEEEEEEETTEEEE
T ss_pred HH-----------------------------------------------------HhhcceeecceEEEEEEecCCeEEE
Confidence 44 5567777766 5555432 35
Q ss_pred EEcCCcEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc-cc---CccHHHHHH
Q 035902 294 EFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-LH---GISIDAKNI 368 (381)
Q Consensus 294 ~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-~~---~a~~~a~~~ 368 (381)
.+.++.++++|.|++|+|++||++.+.. +..++ ++..+.+++.+..++|+.|||||+|||+++ ++ .|..+|+.+
T Consensus 299 ~~~~~~~~~~D~vLvAvGR~Pnt~~L~l-e~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~a 377 (542)
T 4b1b_A 299 EFSDKTSELYDTVLYAIGRKGDIDGLNL-ESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEIL 377 (542)
T ss_dssp EETTSCEEEESEEEECSCEEESCGGGCG-GGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCCCCHHHHHHHHHHH
T ss_pred EEcCCCeEEEEEEEEcccccCCccccCc-ccceeeecccCceEeccccccccCCCeEEeccccCCchhHHHHHHHHHHHH
Confidence 6678889999999999999999976655 55676 666666644336778999999999999865 33 888999999
Q ss_pred HHHhhhcc
Q 035902 369 ANDINLAL 376 (381)
Q Consensus 369 a~~i~~~l 376 (381)
+++|.+.-
T Consensus 378 a~~i~g~~ 385 (542)
T 4b1b_A 378 ARRLFKDS 385 (542)
T ss_dssp HHHHHSCC
T ss_pred HHHHhcCC
Confidence 99998743
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=268.46 Aligned_cols=289 Identities=17% Similarity=0.202 Sum_probs=202.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+||+|||||++|+++|..|++. |.+|+|||+++..+.... .+........ .. ....++..
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-----~~~~~~~g~~---~~----------~~~~~~~~ 62 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC-----GIALYLGKEI---KN----------NDPRGLFY 62 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG-----GHHHHHTTCB---GG----------GCGGGGBS
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc-----cchhhhcCCc---cc----------CCHHHhhh
Confidence 5899999999999999999998 999999999875442100 0000000000 00 00011111
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
.+.+.++++++++++++++..++.+. +. +.+.+...++...++||+||+|||+.|..|+++|.+. . .+++...+
T Consensus 63 ~~~~~~~~~gv~~~~~~~v~~i~~~~--~~--v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~-~-~v~~~~~~ 136 (452)
T 2cdu_A 63 SSPEELSNLGANVQMRHQVTNVDPET--KT--IKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDS-S-RVYLCKNY 136 (452)
T ss_dssp CCHHHHHHTTCEEEESEEEEEEEGGG--TE--EEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTS-T-TEEECSSH
T ss_pred cCHHHHHHcCCEEEeCCEEEEEEcCC--CE--EEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCC-C-CEEEeCcH
Confidence 22334556789988999999988765 55 4444311122367999999999999999999998753 2 24443322
Q ss_pred CCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceec-hhhHHHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 162 ENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLT-REIVFAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 162 ~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
.+.. ...+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++| ..+.++...+
T Consensus 137 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~l------------------ 197 (452)
T 2cdu_A 137 NDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHE-RVLYKYFDKEFTDIL------------------ 197 (452)
T ss_dssp HHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS-STTTTTSCHHHHHHH------------------
T ss_pred HHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCC-chhhhhhhhhHHHHH------------------
Confidence 2111 1258999999999999999999999999999999998 6666 3333333222
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--CeE--EEcCCcEeeccEEEEe
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NEV--EFENGKIEEFEAIIFA 309 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~v--~~~~g~~~~~D~vi~a 309 (381)
.+.+++.+++++.+ |+++.. +.+ ...+|+++++|.||+|
T Consensus 198 -----------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a 242 (452)
T 2cdu_A 198 -----------------------------------AKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILC 242 (452)
T ss_dssp -----------------------------------HHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred -----------------------------------HHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEEC
Confidence 34446678888877 777764 333 2347889999999999
Q ss_pred cCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhhc
Q 035902 310 TGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINLA 375 (381)
Q Consensus 310 ~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~~ 375 (381)
+|++|+++ ++. . . + ++++|++.+| +.++++.|||||+|||+... ..|..||+.+|++|.+.
T Consensus 243 ~G~~p~~~-ll~-~-~-l~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 317 (452)
T 2cdu_A 243 IGFRPNTE-LLK-G-K-VAMLDNGAIITD-EYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTED 317 (452)
T ss_dssp CCEEECCG-GGT-T-T-SCBCTTSCBCCC-TTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSC
T ss_pred cCCCCCHH-HHH-H-h-hhcCCCCCEEEC-CCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCC
Confidence 99999986 444 3 4 4 6788999999 56778999999999998731 27899999999999864
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=262.99 Aligned_cols=297 Identities=15% Similarity=0.197 Sum_probs=202.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCee-eecC---CcccccCC---CCCCCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMK-LHLA---KQFCELPH---MPFPSRTPTF 73 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~-~~~~---~~~~~~~~---~~~~~~~~~~ 73 (381)
.++||+|||||+||+++|..|++.|.+|+|||+ +.+||.|.. .+.+... .... ..+..+.. +..+.. ...
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 81 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA-SPR 81 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC-CCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccC-CCc
Confidence 358999999999999999999999999999999 678876642 1111100 0000 00000000 111000 111
Q ss_pred CCHHHHHH-----------HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 74 VPRISFIN-----------YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 74 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+..++.. .+.+.+++.+++++.++.+. + +. .. |.+.+ ..+.||+||+|||+.|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~--~~--~~--v~v~~------~~~~~d~lviATGs~p~~ 148 (458)
T 1lvl_A 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-L--DG--KQ--VEVDG------QRIQCEHLLLATGSSSVE 148 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-E--ET--TE--EEETT------EEEECSEEEECCCEEECC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-c--cC--CE--EEEee------EEEEeCEEEEeCCCCCCC
Confidence 22233322 23455667788888776543 2 22 33 55543 579999999999999876
Q ss_pred CC-CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhC
Q 035902 143 PE-VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFL 221 (381)
Q Consensus 143 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l 221 (381)
|+ ++ .+ +.++++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.++...+
T Consensus 149 ~~~~~-~~---~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l---- 218 (458)
T 1lvl_A 149 LPMLP-LG---GPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE-RILPTYDSELTAPV---- 218 (458)
T ss_dssp BTTBC-CB---TTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHH----
T ss_pred CCCCC-cc---CcEecHHHHhhhhc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCC-ccccccCHHHHHHH----
Confidence 65 44 22 23555555444333 57999999999999999999999999999999998 67675554443333
Q ss_pred cHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEc--C
Q 035902 222 PCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFE--N 297 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~--~ 297 (381)
.+.+++.+|+++.+ +++++.+.+.+. +
T Consensus 219 -------------------------------------------------~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~ 249 (458)
T 1lvl_A 219 -------------------------------------------------AESLKKLGIALHLGHSVEGYENGCLLANDGK 249 (458)
T ss_dssp -------------------------------------------------HHHHHHHTCEEETTCEEEEEETTEEEEECSS
T ss_pred -------------------------------------------------HHHHHHCCCEEEECCEEEEEEeCCEEEEECC
Confidence 23345567888877 777776435444 5
Q ss_pred C--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHH
Q 035902 298 G--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIAND 371 (381)
Q Consensus 298 g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~ 371 (381)
| +++++|.|++|+|++|+++.+.. +..++ ++++ ++.+| +.++++.|+||++|||...+. .|..||+.+|++
T Consensus 250 G~~~~i~~D~vv~a~G~~p~~~~l~~-~~~g~~~~~~-~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~ 326 (458)
T 1lvl_A 250 GGQLRLEADRVLVAVGRRPRTKGFNL-ECLDLKMNGA-AIAID-ERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEI 326 (458)
T ss_dssp SCCCEECCSCEEECCCEEECCSSSSG-GGSCCCEETT-EECCC-TTCBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHH
T ss_pred CceEEEECCEEEECcCCCcCCCCCCc-HhcCCcccCC-EEeEC-CCCcCCCCCEEEeeccCCCcccHHHHHHHHHHHHHH
Confidence 6 68999999999999999865422 33566 5555 78888 466788999999999988654 789999999999
Q ss_pred hhhc
Q 035902 372 INLA 375 (381)
Q Consensus 372 i~~~ 375 (381)
|.+.
T Consensus 327 i~g~ 330 (458)
T 1lvl_A 327 IAGK 330 (458)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 9863
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=267.94 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=192.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+||||||||+++|..|++.|++|+|||+.+.+||.|... + +.+....++.++
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 177 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG---------------I---------PGFKLEKSVVER 177 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT---------------S---------CTTTSCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec---------------C---------CCccCCHHHHHH
Confidence 3789999999999999999999999999999999888865421 1 112222456677
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
..++++++++++++++.+. .. +.+++. .+.||+||+|||+. |..+.++|.+. .+ +++..++
T Consensus 178 ~~~~l~~~gv~~~~~~~v~--------~~--v~~~~~------~~~~d~vvlAtG~~~~~~~~ipG~~~-~g-v~~a~~~ 239 (456)
T 2vdc_G 178 RVKLLADAGVIYHPNFEVG--------RD--ASLPEL------RRKHVAVLVATGVYKARDIKAPGSGL-GN-IVAALDY 239 (456)
T ss_dssp HHHHHHHTTCEEETTCCBT--------TT--BCHHHH------HSSCSEEEECCCCCEECCTTCSCCTT-TT-EEEHHHH
T ss_pred HHHHHHHCCcEEEeCCEec--------cE--EEhhHh------HhhCCEEEEecCCCCCCCCCCCCCcC-CC-cEEHHHH
Confidence 7778888899988887652 11 333222 25699999999997 77788888652 33 3322110
Q ss_pred ---------CC--------CCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 162 ---------EN--------GGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 162 ---------~~--------~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
.. .....+++++|||+|.+|+|+|..+.+.|. +|++++|++...+|....++
T Consensus 240 l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~---------- 309 (456)
T 2vdc_G 240 LTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREV---------- 309 (456)
T ss_dssp HHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHH----------
T ss_pred HHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHH----------
Confidence 00 122468999999999999999999999987 59999998843344433211
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe----EE---
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE----VE--- 294 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~----v~--- 294 (381)
+.+++.+++++.+ +.++.+++ +.
T Consensus 310 ------------------------------------------------~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~ 341 (456)
T 2vdc_G 310 ------------------------------------------------AHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVR 341 (456)
T ss_dssp ------------------------------------------------HHHHHTTCEEECCSSSCCEEEEEEEETTEEEE
T ss_pred ------------------------------------------------HHHHHCCCEEEeCCCceEEeCCCcEEEEEEEE
Confidence 1112223333332 22222110 11
Q ss_pred ---------------EcCC--cEeeccEEEEecCCCCCcch-hccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccc
Q 035902 295 ---------------FENG--KIEEFEAIIFATGYKSTVRN-WLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSR 355 (381)
Q Consensus 295 ---------------~~~g--~~~~~D~vi~a~G~~p~~~~-~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~ 355 (381)
..+| +++++|.||+|+|++|+... ++. . .++ ++++|++.+|...++|+.|+|||+||+.
T Consensus 342 ~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~-~-~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~ 419 (456)
T 2vdc_G 342 IHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFD-E-PELKVTRWGTLLVDHRTKMTNMDGVFAAGDIV 419 (456)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHH-S-TTSCBCTTSSBCCCTTTCBCSSTTEEECGGGG
T ss_pred EEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcc-c-CCeeECCCCCEEECCCCCcCCCCCEEEecccc
Confidence 1123 47899999999999998754 444 4 566 7889999999433678999999999998
Q ss_pred cccc---CccHHHHHHHHHhhhcccc
Q 035902 356 TGLH---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 356 ~~~~---~a~~~a~~~a~~i~~~l~~ 378 (381)
.++. .|+.+|+.+|++|.+.|..
T Consensus 420 ~g~~~v~~A~~~G~~aA~~i~~~L~~ 445 (456)
T 2vdc_G 420 RGASLVVWAIRDGRDAAEGIHAYAKA 445 (456)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhc
Confidence 8765 8999999999999998853
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=264.42 Aligned_cols=286 Identities=14% Similarity=0.164 Sum_probs=200.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+||+|||||++|+++|..|++. |.+|+|||+++..+.. .. .+. . + .... .....++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~--~~---~~~----~--~-~~~~--------~~~~~~~~~ 60 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL--SA---GMQ----L--Y-LEGK--------VKDVNSVRY 60 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC--GG---GHH----H--H-HTTS--------SCCGGGSBS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc--cc---cch----h--h-hcCc--------cCCHHHhhc
Confidence 4799999999999999999998 8999999998765411 00 000 0 0 0000 001111111
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
++.+.+++++++++.++++..++.+. +. |.+.+...++..+++||+||+|||+.|..|++||.+. .+ +++...+
T Consensus 61 ~~~~~~~~~gv~~~~~~~v~~i~~~~--~~--v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~-~~-v~~~~~~ 134 (447)
T 1nhp_A 61 MTGEKMESRGVNVFSNTEITAIQPKE--HQ--VTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDL-DN-IYLMRGR 134 (447)
T ss_dssp CCHHHHHHTTCEEEETEEEEEEETTT--TE--EEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTS-BS-EECCCHH
T ss_pred CCHHHHHHCCCEEEECCEEEEEeCCC--CE--EEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCC-CC-eEEECCH
Confidence 22334556789988999999887755 55 5554411122246999999999999999999998763 22 4443222
Q ss_pred CCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 162 ENG-------GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 162 ~~~-------~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
.+. ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++++ .+.++...
T Consensus 135 ~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~----------------- 196 (447)
T 1nhp_A 135 QWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD-RPLGVYLDKEFTDV----------------- 196 (447)
T ss_dssp HHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTTCCHHHHHH-----------------
T ss_pred HHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCc-ccccccCCHHHHHH-----------------
Confidence 111 11158999999999999999999999999999999988 55552 22222221
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-e---EEEcCCcEeeccEEE
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-E---VEFENGKIEEFEAII 307 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-~---v~~~~g~~~~~D~vi 307 (381)
+.+.+++.+++++.+ |++++.+ . +.+ +++++++|.||
T Consensus 197 ------------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi 239 (447)
T 1nhp_A 197 ------------------------------------LTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVV 239 (447)
T ss_dssp ------------------------------------HHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEE
T ss_pred ------------------------------------HHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEE
Confidence 244556778998887 8888754 2 444 56789999999
Q ss_pred EecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc-------------ccCccHHHHHHHHHhh
Q 035902 308 FATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-------------LHGISIDAKNIANDIN 373 (381)
Q Consensus 308 ~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-------------~~~a~~~a~~~a~~i~ 373 (381)
+|+|++|+++ ++. . . + ++.+|++.+| +.++++.|+|||+|||+.. ...|..||+.+|++|.
T Consensus 240 ~a~G~~p~~~-~~~-~-~-~~~~~~G~i~Vd-~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 314 (447)
T 1nhp_A 240 VAVGVRPNTA-WLK-G-T-LELHPNGLIKTD-EYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE 314 (447)
T ss_dssp ECSCEEESCG-GGT-T-T-SCBCTTSCBCCC-TTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred ECcCCCCChH-HHH-h-h-hhhcCCCcEEEC-ccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhc
Confidence 9999999986 444 3 3 4 6678999999 5677889999999999862 1279999999999998
Q ss_pred hc
Q 035902 374 LA 375 (381)
Q Consensus 374 ~~ 375 (381)
+.
T Consensus 315 g~ 316 (447)
T 1nhp_A 315 EP 316 (447)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=258.96 Aligned_cols=283 Identities=19% Similarity=0.208 Sum_probs=201.3
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHH
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRI 77 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (381)
|+ ++||+|||||++|+++|..|++.|. +|+|+|++. +..|....++ . .+.......
T Consensus 1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~--------------~-----~~~~~~~~~ 59 (384)
T 2v3a_A 1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLS--------------T-----GFSKNKDAD 59 (384)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGG--------------G-----TTTTTCCHH
T ss_pred CCCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCccccc--------------H-----HHhCCCCHH
Confidence 53 5899999999999999999999984 689999875 2122111000 0 001112233
Q ss_pred HHHH-HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCccee
Q 035902 78 SFIN-YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYM 156 (381)
Q Consensus 78 ~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~ 156 (381)
++.. ++.+++++++++++.++++..++... .. |.+.+ ..+.||+||+|||+.|..|+++|.+. ..++
T Consensus 60 ~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~--v~~~~------~~~~~d~lviAtG~~p~~p~i~g~~~--~~v~ 127 (384)
T 2v3a_A 60 GLAMAEPGAMAEQLNARILTHTRVTGIDPGH--QR--IWIGE------EEVRYRDLVLAWGAEPIRVPVEGDAQ--DALY 127 (384)
T ss_dssp HHEEECHHHHHHHTTCEEECSCCCCEEEGGG--TE--EEETT------EEEECSEEEECCCEEECCCCCBSTTT--TCEE
T ss_pred HhhccCHHHHHHhCCcEEEeCCEEEEEECCC--CE--EEECC------cEEECCEEEEeCCCCcCCCCCCCcCc--CCEE
Confidence 4432 45666677899988888888887654 33 66543 46999999999999999998888652 2245
Q ss_pred ecCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHHHHHH
Q 035902 157 HSSKYENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLVDFIV 230 (381)
Q Consensus 157 ~~~~~~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~~ 230 (381)
+...+.+.. ...+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .+++.. +.++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~~~~~~~~~~~-------------- 192 (384)
T 2v3a_A 128 PINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE-QVMPGLLHPAAAKA-------------- 192 (384)
T ss_dssp ECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTTSCHHHHHH--------------
T ss_pred EECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-chhhcccCHHHHHH--------------
Confidence 544432211 1248999999999999999999999999999999988 555542 2222222
Q ss_pred HHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeecc
Q 035902 231 VMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFE 304 (381)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D 304 (381)
+.+.+++.+++++.+ |++++.+ .+.+.+|+++++|
T Consensus 193 ---------------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d 233 (384)
T 2v3a_A 193 ---------------------------------------VQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCD 233 (384)
T ss_dssp ---------------------------------------HHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEES
T ss_pred ---------------------------------------HHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECC
Confidence 244456678888877 7777542 4677889999999
Q ss_pred EEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccc--cc---c--CccHHHHHHHHHhhhc
Q 035902 305 AIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRT--GL---H--GISIDAKNIANDINLA 375 (381)
Q Consensus 305 ~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~--~~---~--~a~~~a~~~a~~i~~~ 375 (381)
.||+|+|.+|+++ ++. . .++-..+| +.+| +.++++.|||||+|||+. +. . .|..||+.+|++|.+.
T Consensus 234 ~vv~a~G~~p~~~-l~~-~-~g~~~~~g-i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~ 306 (384)
T 2v3a_A 234 LVVSAVGLRPRTE-LAF-A-AGLAVNRG-IVVD-RSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN 306 (384)
T ss_dssp EEEECSCEEECCH-HHH-H-TTCCBSSS-EEEC-TTCBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred EEEECcCCCcCHH-HHH-H-CCCCCCCC-EEEC-CCCCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence 9999999999986 443 3 56622367 8888 457789999999999974 21 1 5789999999999864
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=270.47 Aligned_cols=304 Identities=14% Similarity=0.112 Sum_probs=197.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC--------CCCCCcCCC-CCCCeeeecCCc----ccccCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED--------CSASLWKKR-AYDRMKLHLAKQ----FCELPHMPFPSR 69 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~--------~~g~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~ 69 (381)
++||+||||||+|+++|..|++.|.+|+|||+++ .+||.|.+. +.+...+..... ......+.....
T Consensus 32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~ 111 (519)
T 3qfa_A 32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE 111 (519)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccC
Confidence 5899999999999999999999999999999854 577755431 111100000000 000000111001
Q ss_pred CCCCCCHHHHHHHHH-----------HHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 70 TPTFVPRISFINYVD-----------NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 70 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
.........+.++.+ ..++..+++++.+. +..++ . ....|...++ +...+.||+||||||+
T Consensus 112 ~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d--~--~~v~v~~~~g---~~~~i~~d~lViATGs 183 (519)
T 3qfa_A 112 ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIG--P--HRIKATNNKG---KEKIYSAERFLIATGE 183 (519)
T ss_dssp SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE--T--TEEEEECTTC---CCCEEEEEEEEECCCE
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee--C--CEEEEEcCCC---CEEEEECCEEEEECCC
Confidence 011222333333222 23444566654433 33332 2 3444444333 2357999999999999
Q ss_pred CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHH
Q 035902 139 NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLL 218 (381)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~ 218 (381)
.|..|++||... .+.++.++.... ..+++++|||+|.+|+|+|..+++.|.+|+++.|. .+++..+.++...+
T Consensus 184 ~p~~p~i~G~~~---~~~t~~~~~~l~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~~~~~~~- 256 (519)
T 3qfa_A 184 RPRYLGIPGDKE---YCISSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQDMANKI- 256 (519)
T ss_dssp EECCCCCTTHHH---HCBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CSSTTSCHHHHHHH-
T ss_pred CcCCCCCCCccC---ceEcHHHHhhhh-hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc--cccccCCHHHHHHH-
Confidence 999998888643 233443333332 35788999999999999999999999999999984 46666655544443
Q ss_pred hhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe---C---
Q 035902 219 KFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN---R--- 290 (381)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~---~--- 290 (381)
.+.+++.+|+++.+ ++++. .
T Consensus 257 ----------------------------------------------------~~~l~~~GV~v~~~~~v~~v~~~~~~~~ 284 (519)
T 3qfa_A 257 ----------------------------------------------------GEHMEEHGIKFIRQFVPIKVEQIEAGTP 284 (519)
T ss_dssp ----------------------------------------------------HHHHHHTTCEEEESEEEEEEEEEECCTT
T ss_pred ----------------------------------------------------HHHHHHCCCEEEeCCeEEEEEEccCCCC
Confidence 33345667777766 44443 2
Q ss_pred Ce--EEE--cCC-c--EeeccEEEEecCCCCCcchhccccCCcc-cc-cCCCCCCCCCCCCCCCCcEEEEeccc-cccc-
Q 035902 291 NE--VEF--ENG-K--IEEFEAIIFATGYKSTVRNWLKRADKDF-FD-EYGMPKRNCPNHWKGENGLYCAGFSR-TGLH- 359 (381)
Q Consensus 291 ~~--v~~--~~g-~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~ifa~Gd~~-~~~~- 359 (381)
+. +.+ .++ + ++++|.|++|+|++|+++.+.. +..++ ++ ++|++.+| +.++++.|||||+|||+ +.+.
T Consensus 285 ~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l-~~~gl~~~~~~G~I~Vd-~~~~Ts~~~IyA~GD~~~g~~~~ 362 (519)
T 3qfa_A 285 GRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGL-ETVGVKINEKTGKIPVT-DEEQTNVPYIYAIGDILEDKVEL 362 (519)
T ss_dssp CEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCS-TTTTCCCCTTTCCBCCC-TTSBCSSTTEEECGGGBSSSCCC
T ss_pred ceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCCh-hhcCcEEcCCCCeEeeC-CCCccCCCCEEEEEeccCCCCcc
Confidence 22 222 344 2 5689999999999999865423 44666 66 57999999 56778999999999998 4333
Q ss_pred --CccHHHHHHHHHhhhc
Q 035902 360 --GISIDAKNIANDINLA 375 (381)
Q Consensus 360 --~a~~~a~~~a~~i~~~ 375 (381)
.|..||+.+|++|.+.
T Consensus 363 ~~~A~~~g~~aa~~i~g~ 380 (519)
T 3qfa_A 363 TPVAIQAGRLLAQRLYAG 380 (519)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 7899999999999864
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=262.98 Aligned_cols=302 Identities=16% Similarity=0.148 Sum_probs=198.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC---------CCCCCcCCC-CCCCeeeecCCc----ccccCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED---------CSASLWKKR-AYDRMKLHLAKQ----FCELPHMPFPS 68 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~---------~~g~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~ 68 (381)
++||+|||||++|+++|..|++.|.+|+|||+.. .+||.|.+. +.+...+..... ......+.+..
T Consensus 9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~ 88 (483)
T 3dgh_A 9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNV 88 (483)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence 5899999999999999999999999999999421 367765431 111100000000 00000010000
Q ss_pred CCCCCCCHHHHHHHHH-----------HHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 69 RTPTFVPRISFINYVD-----------NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 69 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
......+...+.++.+ ..+++.++++..+. ...+ +. ..+.+...++ ...+.||+||+|||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~--~~v~v~~~~g----~~~~~~d~lviATG 159 (483)
T 3dgh_A 89 DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGL-GSFV--DS--HTLLAKLKSG----ERTITAQTFVIAVG 159 (483)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEE--ET--TEEEEECTTC----CEEEEEEEEEECCC
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEc--cC--CEEEEEeCCC----eEEEEcCEEEEeCC
Confidence 1011223333333332 22344466554332 2222 22 4444544433 15799999999999
Q ss_pred CCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 138 ENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
+.|..|++||.+.. .+++.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.|. .+++..+.++...+
T Consensus 160 s~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~l~~~d~~~~~~l 233 (483)
T 3dgh_A 160 GRPRYPDIPGAVEY---GITSDDLFSL-DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS--IVLRGFDQQMAELV 233 (483)
T ss_dssp EEECCCSSTTHHHH---CBCHHHHTTC-SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS--CSSTTSCHHHHHHH
T ss_pred CCcCCCCCCCcccc---cCcHHHHhhh-hhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC--CCCcccCHHHHHHH
Confidence 99999999887432 2343333332 235789999999999999999999999999999984 45565555444333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N-- 291 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~-- 291 (381)
.+.+++.+|+++.+ ++++.. +
T Consensus 234 -----------------------------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~ 260 (483)
T 3dgh_A 234 -----------------------------------------------------AASMEERGIPFLRKTVPLSVEKQDDGK 260 (483)
T ss_dssp -----------------------------------------------------HHHHHHTTCCEEETEEEEEEEECTTSC
T ss_pred -----------------------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCCc
Confidence 33345667778777 777763 2
Q ss_pred -eEEEcCCc-----EeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEecccc-ccc---C
Q 035902 292 -EVEFENGK-----IEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRT-GLH---G 360 (381)
Q Consensus 292 -~v~~~~g~-----~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~-~~~---~ 360 (381)
.+.+.+++ ++++|.|++|+|++|+++.+.. +..++ +++ |++.+| +.++++.|||||+|||+. .+. .
T Consensus 261 ~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l-~~~gl~~~~-G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~ 337 (483)
T 3dgh_A 261 LLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNL-PNAGVTVQK-DKIPVD-SQEATNVANIYAVGDIIYGKPELTPV 337 (483)
T ss_dssp EEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTG-GGTTCCCBT-TBBCCC-TTCBCSSTTEEECSTTBTTSCCCHHH
T ss_pred EEEEEecCCCCceeEEEcCEEEECcccccCcCcCCc-hhcCccccC-CEEEEC-cCCccCCCCEEEEEcccCCCCccHHH
Confidence 25666653 7899999999999999975532 33666 666 999999 567789999999999974 333 8
Q ss_pred ccHHHHHHHHHhhhc
Q 035902 361 ISIDAKNIANDINLA 375 (381)
Q Consensus 361 a~~~a~~~a~~i~~~ 375 (381)
|..||+.+|++|.+.
T Consensus 338 A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 338 AVLAGRLLARRLYGG 352 (483)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCC
Confidence 899999999999874
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=268.30 Aligned_cols=305 Identities=16% Similarity=0.130 Sum_probs=199.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEec--------CCCCCCCcCCC-CCCCeeeecCCc----ccccCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILER--------EDCSASLWKKR-AYDRMKLHLAKQ----FCELPHMPFPSR 69 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~--------~~~~g~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~ 69 (381)
++||+|||||+||+++|..|++.|.+|+|||+ ...+||.|.+. +++...+..... ......+.....
T Consensus 6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~ 85 (488)
T 3dgz_A 6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVA 85 (488)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccC
Confidence 58999999999999999999999999999997 45678866431 111100000000 000001111101
Q ss_pred CCCCCCHHHHHHHH-----------HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 70 TPTFVPRISFINYV-----------DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 70 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
.+.......+.++. ...+++.++++..+ .+..+ + ...+.+...++ +...+.||+||+|||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~---~-~~~v~v~~~~g---~~~~~~~d~lViATGs 157 (488)
T 3dgz_A 86 QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFV---D-EHTVRGVDKGG---KATLLSAEHIVIATGG 157 (488)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEES---S-SSEEEEECTTS---CEEEEEEEEEEECCCE
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEc---c-CCeEEEEeCCC---ceEEEECCEEEEcCCC
Confidence 01122333333332 22334456665332 23222 1 24444443332 3367999999999999
Q ss_pred CCCCCC-CCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH
Q 035902 139 NGLIPE-VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 139 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
.|..|+ +||.+.. .+++.++... ...+++++|||+|.+|+|+|..+++.|.+|+++.|.+ +++..+.++...+
T Consensus 158 ~p~~p~~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~--~l~~~d~~~~~~l 231 (488)
T 3dgz_A 158 RPRYPTQVKGALEY---GITSDDIFWL-KESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLV 231 (488)
T ss_dssp EECCCSSCBTHHHH---CBCHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTSCHHHHHHH
T ss_pred CCCCCCCCCCcccc---cCcHHHHHhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc--ccccCCHHHHHHH
Confidence 999998 8886431 2333333333 2357899999999999999999999999999999864 4555554444333
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC---C-
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR---N- 291 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~---~- 291 (381)
.+.+++.+|+++.+ ++++.. +
T Consensus 232 -----------------------------------------------------~~~l~~~gv~~~~~~~v~~i~~~~~~~ 258 (488)
T 3dgz_A 232 -----------------------------------------------------TEHMESHGTQFLKGCVPSHIKKLPTNQ 258 (488)
T ss_dssp -----------------------------------------------------HHHHHHTTCEEEETEEEEEEEECTTSC
T ss_pred -----------------------------------------------------HHHHHHCCCEEEeCCEEEEEEEcCCCc
Confidence 33446678888877 667653 2
Q ss_pred -eEEEcC---Cc--EeeccEEEEecCCCCCcchhccccCCcc-cc-cCCCCCCCCCCCCCCCCcEEEEecccc-ccc---
Q 035902 292 -EVEFEN---GK--IEEFEAIIFATGYKSTVRNWLKRADKDF-FD-EYGMPKRNCPNHWKGENGLYCAGFSRT-GLH--- 359 (381)
Q Consensus 292 -~v~~~~---g~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~ifa~Gd~~~-~~~--- 359 (381)
.+.+.+ |+ ++++|.|++|+|++|++..+.. +..++ ++ ++|++.+| +.++++.|||||+|||+. .+.
T Consensus 259 ~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l-~~~g~~~~~~~G~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~ 336 (488)
T 3dgz_A 259 LQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNL-EKAGISTNPKNQKIIVD-AQEATSVPHIYAIGDVAEGRPELTP 336 (488)
T ss_dssp EEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTG-GGGTCCBCSSSCCBCCC-TTSBCSSTTEEECGGGBTTCCCCHH
T ss_pred EEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCc-cccCcEecCCCCeEeEC-CCCccCCCCEEEeEEecCCCCcchh
Confidence 255544 54 4799999999999999975422 33666 66 78999999 567789999999999973 333
Q ss_pred CccHHHHHHHHHhhhcc
Q 035902 360 GISIDAKNIANDINLAL 376 (381)
Q Consensus 360 ~a~~~a~~~a~~i~~~l 376 (381)
.|..||+.+|++|.+..
T Consensus 337 ~A~~~g~~aa~~i~g~~ 353 (488)
T 3dgz_A 337 TAIKAGKLLAQRLFGKS 353 (488)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 78999999999998753
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=263.96 Aligned_cols=282 Identities=17% Similarity=0.178 Sum_probs=199.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
++|+|||||++|+++|..|++.|. +|+|||+++..+. ... . .+..+..... ... ++..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y--~~~-----~--l~~~~l~~~~-----~~~------~~~~ 61 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPY--QRP-----P--LSKAYLKSGG-----DPN------SLMF 61 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSB--CSG-----G--GGTGGGGSCC-----CTT------SSBS
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCC--CCc-----c--CCHHHHCCCC-----CHH------HccC
Confidence 689999999999999999999998 8999999885542 110 0 0000100000 000 1111
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
...+.+.+.+++++. ++++.++... .. +.+.++ ..+.||+||+|||+.|..|++||.+. .+ ++.....
T Consensus 62 ~~~~~~~~~~i~~~~-~~v~~id~~~--~~--v~~~~g-----~~~~~d~lvlAtG~~p~~~~i~g~~~-~~-v~~~~~~ 129 (404)
T 3fg2_P 62 RPEKFFQDQAIELIS-DRMVSIDREG--RK--LLLASG-----TAIEYGHLVLATGARNRMLDVPNASL-PD-VLYLRTL 129 (404)
T ss_dssp SCHHHHHHTTEEEEC-CCEEEEETTT--TE--EEESSS-----CEEECSEEEECCCEEECCCCSTTTTS-TT-EECCSSH
T ss_pred CCHHHHHhCCCEEEE-EEEEEEECCC--CE--EEECCC-----CEEECCEEEEeeCCCccCCCCCCCCC-Cc-EEEECCH
Confidence 112344556888888 8899988754 43 777776 67999999999999999888888653 22 2222111
Q ss_pred CC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHHhh
Q 035902 162 EN-----GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVMLSK 235 (381)
Q Consensus 162 ~~-----~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (381)
.+ .....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++++ ...++...
T Consensus 130 ~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~~~~~~~~~~~~~------------------- 189 (404)
T 3fg2_P 130 DESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAP-RVMARVVTPEISSY------------------- 189 (404)
T ss_dssp HHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTTTSCHHHHHH-------------------
T ss_pred HHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC-cchhhccCHHHHHH-------------------
Confidence 11 111257999999999999999999999999999999988 44443 22222221
Q ss_pred hhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcCCcEeeccEEEE
Q 035902 236 MKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFENGKIEEFEAIIF 308 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~g~~~~~D~vi~ 308 (381)
+.+.+++.+++++.+ |+++..+ ++.+++|+++++|.||+
T Consensus 190 ----------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~ 235 (404)
T 3fg2_P 190 ----------------------------------FHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVV 235 (404)
T ss_dssp ----------------------------------HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEE
T ss_pred ----------------------------------HHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEE
Confidence 244556778888877 8887653 57889999999999999
Q ss_pred ecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhhc
Q 035902 309 ATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINLA 375 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~~ 375 (381)
|+|++|+++. +. . .++-..+| +.+| +.++++.||||++|||+..+ ..|..||+.+|++|.+.
T Consensus 236 a~G~~p~~~l-~~-~-~gl~~~~G-i~vd-~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 310 (404)
T 3fg2_P 236 GVGVIPNVEI-AA-A-AGLPTAAG-IIVD-QQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGD 310 (404)
T ss_dssp CCCEEECCHH-HH-H-TTCCBSSS-EEEC-TTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTC
T ss_pred CcCCccCHHH-HH-h-CCCCCCCC-EEEC-CCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCC
Confidence 9999999853 33 3 56633356 8888 56678999999999997643 26889999999999875
Q ss_pred c
Q 035902 376 L 376 (381)
Q Consensus 376 l 376 (381)
-
T Consensus 311 ~ 311 (404)
T 3fg2_P 311 A 311 (404)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=265.60 Aligned_cols=285 Identities=15% Similarity=0.116 Sum_probs=198.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
.+||+|||||++|+++|..|++.|. +|+|||++++.+.. .. . .+..+.. .......+.
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~--~~-----~--l~~~~~~-----------~~~~~~~~~ 63 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH--LP-----P--LSKAYLA-----------GKATAESLY 63 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC--SG-----G--GGTTTTT-----------TCSCSGGGB
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCc--CC-----C--CcHHHhC-----------CCCChHHhc
Confidence 5899999999999999999999998 79999998765411 00 0 0000000 000000110
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCc-c-eeec
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEG-E-YMHS 158 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~-~-~~~~ 158 (381)
....+.+++.+++++++++|..++.+. .. |.+.++ +.+.||+||+|||+.|..|+++|.+. .+ . +.+.
T Consensus 64 ~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~--v~~~~g-----~~~~~d~lviAtG~~p~~~~i~G~~~-~~~~~v~~~ 133 (431)
T 1q1r_A 64 LRTPDAYAAQNIQLLGGTQVTAINRDR--QQ--VILSDG-----RALDYDRLVLATGGRPRPLPVASGAV-GKANNFRYL 133 (431)
T ss_dssp SSCHHHHHHTTEEEECSCCEEEEETTT--TE--EEETTS-----CEEECSEEEECCCEEECCCGGGTTHH-HHSTTEEES
T ss_pred ccCHHHHHhCCCEEEeCCEEEEEECCC--CE--EEECCC-----CEEECCEEEEcCCCCccCCCCCCccc-CCCceEEEE
Confidence 011233456788999999999998654 33 777665 57999999999999999888888652 22 0 2222
Q ss_pred CCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 159 SKYEN-----GGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 159 ~~~~~-----~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++++ .+.++...+
T Consensus 134 ~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~-~~l~~~~~~~~~~~l--------------- 197 (431)
T 1q1r_A 134 RTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA-RVLERVTAPPVSAFY--------------- 197 (431)
T ss_dssp SSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTTTSCHHHHHHH---------------
T ss_pred CCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC-ccccchhhHHHHHHH---------------
Confidence 11111 011258999999999999999999999999999999988 55553 222222222
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC----C---eEEEcCCcEeec
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR----N---EVEFENGKIEEF 303 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~----~---~v~~~~g~~~~~ 303 (381)
.+.+++.+++++.+ ++++.. + .+.+++|+++++
T Consensus 198 --------------------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~ 239 (431)
T 1q1r_A 198 --------------------------------------EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA 239 (431)
T ss_dssp --------------------------------------HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEEC
T ss_pred --------------------------------------HHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEc
Confidence 33445567888877 777764 2 467789999999
Q ss_pred cEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHH
Q 035902 304 EAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIAN 370 (381)
Q Consensus 304 D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~ 370 (381)
|.||+|+|++|+++ ++. . .++-..+| +.+| +.++++.|+|||+|||+..+ ..|..||+.+|+
T Consensus 240 D~Vv~a~G~~p~~~-l~~-~-~gl~~~~g-i~Vd-~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~ 314 (431)
T 1q1r_A 240 DLVIAGIGLIPNCE-LAS-A-AGLQVDNG-IVIN-EHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAA 314 (431)
T ss_dssp SEEEECCCEEECCH-HHH-H-TTCCBSSS-EECC-TTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcCcc-hhh-c-cCCCCCCC-EEEC-CCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHH
Confidence 99999999999986 343 3 55532355 8888 56778999999999998653 258899999999
Q ss_pred Hhhhcc
Q 035902 371 DINLAL 376 (381)
Q Consensus 371 ~i~~~l 376 (381)
+|.+..
T Consensus 315 ~i~g~~ 320 (431)
T 1q1r_A 315 ILCGKV 320 (431)
T ss_dssp HHTTCC
T ss_pred HhcCCC
Confidence 998754
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=265.32 Aligned_cols=288 Identities=17% Similarity=0.222 Sum_probs=199.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
+||+|||||++|+++|..|++. |.+|+|||+++..+.... .+. . + ... ......++..
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-----~~~----~-~--~~~--------~~~~~~~l~~ 96 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-----GLP----Y-V--ISG--------AIASTEKLIA 96 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-----GHH----H-H--HTT--------SSSCGGGGBS
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-----Ccc----h-h--hcC--------CcCCHHHhhh
Confidence 6899999999999999999996 889999999876542110 000 0 0 000 0001111111
Q ss_pred -HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC
Q 035902 82 -YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~ 160 (381)
+.+.+.++++++++++++|..++.+. +. +.+.+...++...+.||+||+|||+.|..|+++|.+. .+ +++...
T Consensus 97 ~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~--v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~-~~-v~~~~~ 170 (480)
T 3cgb_A 97 RNVKTFRDKYGIDAKVRHEVTKVDTEK--KI--VYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDL-QG-VHLLKT 170 (480)
T ss_dssp SCHHHHHHTTCCEEESSEEEEEEETTT--TE--EEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTS-BT-EECCSS
T ss_pred cCHHHHHhhcCCEEEeCCEEEEEECCC--CE--EEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccC-CC-EEEeCC
Confidence 12233355689999999999988755 55 4444311112247999999999999999998988753 22 333322
Q ss_pred CCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 161 YENGG-------KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 161 ~~~~~-------~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
..+.. ...+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ .+++..+.++...+
T Consensus 171 ~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~l---------------- 233 (480)
T 3cgb_A 171 IPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND-HIGTIYDGDMAEYI---------------- 233 (480)
T ss_dssp HHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG-GTTSSSCHHHHHHH----------------
T ss_pred HHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC-chhhcCCHHHHHHH----------------
Confidence 21111 1158999999999999999999999999999999988 55554333322222
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe-E--EEcCCcEeeccEEEE
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE-V--EFENGKIEEFEAIIF 308 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~-v--~~~~g~~~~~D~vi~ 308 (381)
.+.+++.+++++.+ |++++.++ + ...++.++++|.||+
T Consensus 234 -------------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~ 276 (480)
T 3cgb_A 234 -------------------------------------YKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLV 276 (480)
T ss_dssp -------------------------------------HHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEE
T ss_pred -------------------------------------HHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEE
Confidence 33445667888876 77776542 2 223456899999999
Q ss_pred ecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccc-------------ccCccHHHHHHHHHhhh
Q 035902 309 ATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTG-------------LHGISIDAKNIANDINL 374 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~-------------~~~a~~~a~~~a~~i~~ 374 (381)
|+|++|+++ ++. . .++ ++++|++.+| +.++++.|||||+|||+.. ...|..||+.+|++|.+
T Consensus 277 a~G~~p~~~-~l~-~-~g~~~~~~G~I~Vd-~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 352 (480)
T 3cgb_A 277 SVGVKPNTD-FLE-G-TNIRTNHKGAIEVN-AYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLD 352 (480)
T ss_dssp CSCEEESCG-GGT-T-SCCCBCTTSCBCCC-TTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTT
T ss_pred CcCCCcChH-HHH-h-CCcccCCCCCEEEC-CCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcC
Confidence 999999986 343 3 566 6778999999 5677889999999999842 12799999999999987
Q ss_pred c
Q 035902 375 A 375 (381)
Q Consensus 375 ~ 375 (381)
.
T Consensus 353 ~ 353 (480)
T 3cgb_A 353 K 353 (480)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=254.49 Aligned_cols=344 Identities=18% Similarity=0.266 Sum_probs=206.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-----CCeEEEecCCCCCCCcCCCCC-CCeeeecC--Cccccc--CCCCC-------
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS-----VPNIILEREDCSASLWKKRAY-DRMKLHLA--KQFCEL--PHMPF------- 66 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g-----~~v~lie~~~~~g~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~------- 66 (381)
+||+|||||++|+++|..|++.| .+|+|||+++.+| |....+ +......+ ..+... +..++
T Consensus 31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 69999999999999999999999 9999999999877 554332 11111100 000000 00000
Q ss_pred --------CCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC-CCeE--EEEEeecCCCceEEEEeCEEEEc
Q 035902 67 --------PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDEN-AKAW--IIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 67 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~--~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
......++.+.++.+|++++++++++.++++++|++++.+++ .+.| .|.+.++. ++...+.||+||+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~-g~~~~~~~d~lVlA 187 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNAD-GEELVRTTRALVVS 187 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETT-SCEEEEEESEEEEC
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCC-CceEEEEeCEEEEC
Confidence 001123457889999999999999999999999999988621 2444 56666653 33448999999999
Q ss_pred cCCCCCCCCCCCCCCCCc--ceeecCCCCCC-CCC-----CCCeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecCcce
Q 035902 136 TGENGLIPEVPGLGSFEG--EYMHSSKYENG-GKF-----IGKNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGPVHV 205 (381)
Q Consensus 136 tG~~~~~~~~~g~~~~~~--~~~~~~~~~~~-~~~-----~~~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~~~~ 205 (381)
||+.|..|.. ++.+.+ .++++..+... ..+ .+++++|||+|.+|+|+|..|.+. +.+|+++.|++ .+
T Consensus 188 tG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~-~~ 264 (463)
T 3s5w_A 188 PGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS-AL 264 (463)
T ss_dssp CCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS-SC
T ss_pred CCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC-CC
Confidence 9998877752 233334 56777765442 222 589999999999999999999999 88999999999 67
Q ss_pred echhhHHHHHHHHhhCcHHHHHHHHHHHh---hhhhcCccccCCCCCCCCCcccccccCCCccc-----cchhhhhhc-C
Q 035902 206 LTREIVFAGMLLLKFLPCKLVDFIVVMLS---KMKFGNLFKYGLERPKKGPFYFKAITGQTPTI-----DVGAMDKIR-K 276 (381)
Q Consensus 206 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~ 276 (381)
+|..+..+... .+...+.+.+..... ..+......... ....+.. ..-+.+.+. .
T Consensus 265 ~p~~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~ 328 (463)
T 3s5w_A 265 KPADDSPFVNE---VFAPKFTDLIYSREHAERERLLREYHNTNY-------------SVVDTDLIERIYGVFYRQKVSGI 328 (463)
T ss_dssp CBCCCCHHHHG---GGSHHHHHHHHHSCHHHHHHHHHHTGGGTS-------------SCBCHHHHHHHHHHHHHHHHHCC
T ss_pred cCccCCccchh---ccChhHHHHHhcCCHHHHHHHHHHhhccCC-------------CcCCHHHHHHHHHHHHHHHhcCC
Confidence 77655433222 222222221111000 000000000000 0000000 001122222 2
Q ss_pred CCeEEccC--cceEeCC--e--EEEc---CCc--EeeccEEEEecCCCCCc-chhccccCCcccccCCCCCCCCCCCCC-
Q 035902 277 GEIQVFPS--ITSINRN--E--VEFE---NGK--IEEFEAIIFATGYKSTV-RNWLKRADKDFFDEYGMPKRNCPNHWK- 343 (381)
Q Consensus 277 ~~v~~~~~--v~~v~~~--~--v~~~---~g~--~~~~D~vi~a~G~~p~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~- 343 (381)
.+++++.+ |+++..+ + +.+. +|+ ++++|.||+|||++|+. ..++. +....+ |.+.++......
T Consensus 329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~-~l~~~~---g~i~v~~~~~~~~ 404 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLE-PLAEYL---GDHEIGRDYRLQT 404 (463)
T ss_dssp CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTG-GGGGGB---C--CCCTTSBCCB
T ss_pred CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhH-HHHHHh---CCcccCccccccc
Confidence 68888888 7777643 2 5555 665 48999999999999992 23333 211112 667777222212
Q ss_pred ---CCCcEEEEecccccc-----c---CccHHHHHHHHHhh
Q 035902 344 ---GENGLYCAGFSRTGL-----H---GISIDAKNIANDIN 373 (381)
Q Consensus 344 ---~~~~ifa~Gd~~~~~-----~---~a~~~a~~~a~~i~ 373 (381)
..++||++|||.... . .|..++.+++..+.
T Consensus 405 ~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 405 DERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp CTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 246799999996521 1 55566665544443
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-32 Score=256.21 Aligned_cols=283 Identities=16% Similarity=0.152 Sum_probs=199.3
Q ss_pred ccEEEECCCHHHHHHHHHHHh---CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNN---LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~---~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
++|+|||||++|+++|..|++ .|.+|+|||+++....... ++. .........++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~-----------------~~~-----~~~~~~~~~~~~ 59 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA-----------------LPH-----VAIGVRDVDELK 59 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS-----------------SCC-----CCSSCCCCCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc-----------------hhh-----cccCCcCHHHHH
Confidence 579999999999999999999 8999999999874321100 000 001111222334
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSK 160 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~ 160 (381)
..+.+.+++.+++++.+ +|+.++.+. .. |.+.++. .+..++.||+||+|||+.|..|.++|++. ...+.+.
T Consensus 60 ~~~~~~~~~~gv~~~~~-~v~~i~~~~--~~--V~~~~g~-~~~~~~~~d~lViAtG~~~~~~~ipG~~~---~~~~~~~ 130 (409)
T 3h8l_A 60 VDLSEALPEKGIQFQEG-TVEKIDAKS--SM--VYYTKPD-GSMAEEEYDYVIVGIGAHLATELVKGWDK---YGYSVCE 130 (409)
T ss_dssp EEHHHHTGGGTCEEEEC-EEEEEETTT--TE--EEEECTT-SCEEEEECSEEEECCCCEECGGGSBTHHH---HCEESSS
T ss_pred HHHHHHHhhCCeEEEEe-eEEEEeCCC--CE--EEEccCC-cccceeeCCEEEECCCCCcCccCCCChhh---cCcCcCC
Confidence 44555666778888766 888887654 44 6666652 23356999999999999988888888754 1233333
Q ss_pred CCCCCCC------CCCeEEEEcCC-------------------C------CHHHHHH----HHhhCC----CeeEEEEec
Q 035902 161 YENGGKF------IGKNVLVVGCG-------------------N------SGMEIAY----DLSSCG----ACTSIVVRG 201 (381)
Q Consensus 161 ~~~~~~~------~~~~v~viG~G-------------------~------~~~e~a~----~l~~~g----~~v~~i~r~ 201 (381)
..+.... ..++++|||+| . .++|+|. .+.+.| .+|+++.+.
T Consensus 131 ~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~ 210 (409)
T 3h8l_A 131 PEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPG 210 (409)
T ss_dssp TTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSS
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Confidence 3222111 12667799999 2 3677775 445666 389999987
Q ss_pred CcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEE
Q 035902 202 PVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQV 281 (381)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 281 (381)
+ .+|.....+...+ .+.+++.+|++
T Consensus 211 ~--~l~~~~~~~~~~~-----------------------------------------------------~~~l~~~gV~~ 235 (409)
T 3h8l_A 211 E--YLSDLSPNSRKAV-----------------------------------------------------ASIYNQLGIKL 235 (409)
T ss_dssp S--SSTTBCHHHHHHH-----------------------------------------------------HHHHHHHTCEE
T ss_pred c--cccccCHHHHHHH-----------------------------------------------------HHHHHHCCCEE
Confidence 6 3443333222222 34456678999
Q ss_pred ccC--cceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhccccC-CcccccCCCCCCCCCCCCC-CCCcEEEEeccccc
Q 035902 282 FPS--ITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLKRAD-KDFFDEYGMPKRNCPNHWK-GENGLYCAGFSRTG 357 (381)
Q Consensus 282 ~~~--v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~ifa~Gd~~~~ 357 (381)
+.+ |++++++++.+++|+++++|.+|+++|++|+. ++. .. .++.+++|++.+| +..++ +.||||++|||.+.
T Consensus 236 ~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~~--~l~-~~~~~l~~~~G~i~vd-~~~~~~~~~~vfa~GD~~~~ 311 (409)
T 3h8l_A 236 VHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNP--ALK-NSTPDLVDDGGFIPTD-LNMVSIKYDNVYAVGDANSM 311 (409)
T ss_dssp ECSCCEEEECSSEEEETTSCEEECSEEEEECCEECCH--HHH-TSCGGGSCTTSCBCBB-TTSBBSSCTTEEECGGGBTT
T ss_pred EcCCceEEECCCeEEECCCCEEeeeEEEECCCCCccH--HHH-hccccCcCCCCCEEeC-cccccCCCCCEEEeehhccC
Confidence 987 99999999999999999999999999999984 444 31 2567889999999 44555 89999999999863
Q ss_pred --cc---CccHHHHHHHHHhhhcc
Q 035902 358 --LH---GISIDAKNIANDINLAL 376 (381)
Q Consensus 358 --~~---~a~~~a~~~a~~i~~~l 376 (381)
+. .|..||+.+|++|...+
T Consensus 312 ~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 312 TVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 22 78999999999999988
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-32 Score=257.15 Aligned_cols=293 Identities=16% Similarity=0.205 Sum_probs=204.8
Q ss_pred CCc-ccEEEECCCHHHHHHHHHHHh---CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCH
Q 035902 1 MEE-VPVVIVGAGPAGLATSACLNN---LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPR 76 (381)
Q Consensus 1 M~~-~~vvIIGaG~aG~~~A~~l~~---~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (381)
|+. +||+|||||++|+++|..|++ .|.+|+|||+++...... .++. ........
T Consensus 1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~-----------------~~~~-----~~~g~~~~ 58 (437)
T 3sx6_A 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVP-----------------SNPW-----VGVGWKER 58 (437)
T ss_dssp CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGG-----------------GHHH-----HHHTSSCH
T ss_pred CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccC-----------------Cccc-----cccCccCH
Confidence 543 789999999999999999999 799999999987321000 0000 00112344
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCccee
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYM 156 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~ 156 (381)
.++...+.+++++.+++++ ..+|+.++.+. .. |.+.++ ..+.||+||+|||+.|..|.+||++...+...
T Consensus 59 ~~~~~~l~~~~~~~gv~~~-~~~v~~id~~~--~~--V~~~~g-----~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~ 128 (437)
T 3sx6_A 59 DDIAFPIRHYVERKGIHFI-AQSAEQIDAEA--QN--ITLADG-----NTVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128 (437)
T ss_dssp HHHEEECHHHHHTTTCEEE-CSCEEEEETTT--TE--EEETTS-----CEEECSEEEECCCCEECGGGSTTCSTTTSSEE
T ss_pred HHHHHHHHHHHHHCCCEEE-EeEEEEEEcCC--CE--EEECCC-----CEEECCEEEECCCCCcCcccCCCCCcccCcce
Confidence 5566666777777898876 46888887654 43 777765 57999999999999999888999875433333
Q ss_pred ecCCCCCCCCC--------CCCeEEEEcCCCC----H--HHHH----HHHhhCCCe-----eEEEEecCcceechhhHHH
Q 035902 157 HSSKYENGGKF--------IGKNVLVVGCGNS----G--MEIA----YDLSSCGAC-----TSIVVRGPVHVLTREIVFA 213 (381)
Q Consensus 157 ~~~~~~~~~~~--------~~~~v~viG~G~~----~--~e~a----~~l~~~g~~-----v~~i~r~~~~~~p~~~~~~ 213 (381)
..+.+.+.... .+++++|||+|.+ | +|+| ..+.+.|.+ |+++++.+ .+.+....
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~-~~~~~~l~-- 205 (437)
T 3sx6_A 129 SICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEP-YIGHLGIQ-- 205 (437)
T ss_dssp CCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSS-STTCTTTT--
T ss_pred ecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCc-cccccccC--
Confidence 33332221111 1456789998654 4 8887 555566753 99999887 33111000
Q ss_pred HHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC
Q 035902 214 GMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN 291 (381)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~ 291 (381)
..+.....+.+.+++.+|+++.+ |++++++
T Consensus 206 ------------------------------------------------~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~ 237 (437)
T 3sx6_A 206 ------------------------------------------------GVGDSKGILTKGLKEEGIEAYTNCKVTKVEDN 237 (437)
T ss_dssp ------------------------------------------------CCTTHHHHHHHHHHHTTCEEECSEEEEEEETT
T ss_pred ------------------------------------------------cchHHHHHHHHHHHHCCCEEEcCCEEEEEECC
Confidence 00011122355667789999988 9999998
Q ss_pred eEEEcC---------CcEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCC-CCCcEEEEecccccc---
Q 035902 292 EVEFEN---------GKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWK-GENGLYCAGFSRTGL--- 358 (381)
Q Consensus 292 ~v~~~~---------g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~ifa~Gd~~~~~--- 358 (381)
++.+++ ++++++|.+++++|++++.. +. +..++.+++|++.+|. .+++ +.||||++|||+..+
T Consensus 238 ~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~--~~-~~~gl~~~~G~i~Vd~-~l~t~~~~~Ifa~GD~~~~~~~~ 313 (437)
T 3sx6_A 238 KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPA--VA-GVEGLCNPGGFVLVDE-HQRSKKYANIFAAGIAIAIPPVE 313 (437)
T ss_dssp EEEEEEECTTSCEEEEEEEECSEEEEECCEECCHH--HH-TSTTTBCTTSCBCBCT-TSBBSSCTTEEECGGGBCCCCSC
T ss_pred eEEEEecccCCccccceEEEEeEEEEcCCCcCchh--hh-ccccccCCCCcEEeCh-hccCCCCCCEEEEEEEeccCCcC
Confidence 877765 67899999999999998853 33 3356788899999994 5555 899999999998642
Q ss_pred ---------c---CccHHHHHHHHHhhhccccCC
Q 035902 359 ---------H---GISIDAKNIANDINLALTDHQ 380 (381)
Q Consensus 359 ---------~---~a~~~a~~~a~~i~~~l~~~~ 380 (381)
. .|..||+.+|+||...|+...
T Consensus 314 ~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~ 347 (437)
T 3sx6_A 314 TTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRK 347 (437)
T ss_dssp CCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 789999999999999887653
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-31 Score=248.64 Aligned_cols=341 Identities=18% Similarity=0.207 Sum_probs=207.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--------------CCeEEEecCCCCCCCcCCCC-CCCeeeecC--Cccccc--CCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--------------VPNIILEREDCSASLWKKRA-YDRMKLHLA--KQFCEL--PHM 64 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--------------~~v~lie~~~~~g~~~~~~~-~~~~~~~~~--~~~~~~--~~~ 64 (381)
+||+|||+||+||++|..|.+.+ ...+.+|+.+.++ |+..+ ++...++.+ +++..+ |..
T Consensus 40 ~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s 117 (501)
T 4b63_A 40 HDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGMLVPGSKMQISFIKDLATLRDPRS 117 (501)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGGCCTTCBCSSCGGGSSSTTTCTTC
T ss_pred CcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCCCCCCccccccchhhhccccCCCC
Confidence 79999999999999999998753 3567788877665 66543 444444332 111111 110
Q ss_pred ---------------CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCC------CeEEEEEeecCCCc
Q 035902 65 ---------------PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENA------KAWIIVAKNTALDA 123 (381)
Q Consensus 65 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~------~~~~v~~~~~~~~~ 123 (381)
+++.....++++.++.+|+++++++++..++++++|+++...+.+ +.|+|++.++..++
T Consensus 118 ~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~ 197 (501)
T 4b63_A 118 SFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGE 197 (501)
T ss_dssp TTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCC
T ss_pred ccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCce
Confidence 112233457899999999999999998789999999999876533 35999999988888
Q ss_pred eEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCCC------CCCCCCCeEEEEcCCCCHHHHHHHHhhC--CCee
Q 035902 124 YEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYEN------GGKFIGKNVLVVGCGNSGMEIAYDLSSC--GACT 195 (381)
Q Consensus 124 ~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~v~viG~G~~~~e~a~~l~~~--g~~v 195 (381)
...+.++.||+|||..|.+|.. ..+.++++|+..+.. ...+.+|+|+|||+|.||+|++..|++. +.+|
T Consensus 198 ~~~~~ar~vVlatG~~P~iP~~---~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v 274 (501)
T 4b63_A 198 ISARRTRKVVIAIGGTAKMPSG---LPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRT 274 (501)
T ss_dssp EEEEEEEEEEECCCCEECCCTT---SCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEE
T ss_pred EEEEEeCEEEECcCCCCCCCCC---CCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceE
Confidence 8899999999999987776654 445678999988764 4457899999999999999999999875 6789
Q ss_pred EEEEecCcceechhhHHHHHH--------HHhhCcHHHHHHHHHHHhhhhhcCcc------------ccCCCCCCCCCcc
Q 035902 196 SIVVRGPVHVLTREIVFAGML--------LLKFLPCKLVDFIVVMLSKMKFGNLF------------KYGLERPKKGPFY 255 (381)
Q Consensus 196 ~~i~r~~~~~~p~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 255 (381)
++++|++ ++.|.....+... .+..++...............++... +..+..+...+..
T Consensus 275 ~~~~R~~-~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~ 353 (501)
T 4b63_A 275 TLIMRDS-AMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQ 353 (501)
T ss_dssp EEECSSS-SCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCS
T ss_pred EEEeCCC-ccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccc
Confidence 9999998 6666544322211 11112222222222111111111000 0000000000000
Q ss_pred cccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc--cccCCC
Q 035902 256 FKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF--FDEYGM 333 (381)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~--~~~~g~ 333 (381)
. .+.+...... .........+++...+.+++.+++.+.+|+++++|.||+||||+++.+.++. ..... .+.+|.
T Consensus 354 ~-~l~~~~~v~~--~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~-~~~~~l~~d~~g~ 429 (501)
T 4b63_A 354 H-RILPERKITR--VEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLL-SKVQHLRPTGQDQ 429 (501)
T ss_dssp S-EEECSEEEEE--EECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHT-GGGGGGSSTTCCS
T ss_pred e-eecCCcceee--eeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhc-chhhhcCcCcCCC
Confidence 0 0000000000 0111122334443335556667888899999999999999999999876655 32222 456677
Q ss_pred CCCCCCCCC-------CCCCcEEEEecc
Q 035902 334 PKRNCPNHW-------KGENGLYCAGFS 354 (381)
Q Consensus 334 ~~~~~~~~~-------~~~~~ifa~Gd~ 354 (381)
+.++..... ...++||+.|-+
T Consensus 430 ~~v~rdy~~~~~~~~~~~~~~i~~qg~~ 457 (501)
T 4b63_A 430 WKPHRDYRVEMDPSKVSSEAGIWLQGCN 457 (501)
T ss_dssp CCBCTTSBBCCCTTTBCTTCEEEECSCC
T ss_pred eeeCCCcEEeecCCccCCCceEEecCCC
Confidence 766622211 234679999865
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-33 Score=261.92 Aligned_cols=286 Identities=17% Similarity=0.171 Sum_probs=193.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+++|||||||+||+++|..|++.+.+|+|||+++..- |. .+ ++.. .....+..++...
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~--~~-----Pl-------L~~v--------a~G~l~~~~i~~p 99 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFL--FT-----PL-------LPSA--------PVGTVDEKSIIEP 99 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEE--CG-----GG-------GGGT--------TTTSSCGGGGEEE
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcc--cc-----cc-------hhHH--------hhccccHHHhhhh
Confidence 3679999999999999999999999999999986210 00 00 0000 0011111222112
Q ss_pred HHHHHH--HhCCccccccEEEEEEEeCCCCeEEEEEeec---------------CCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 83 VDNYVS--QMGINPRYHRSVESASYDENAKAWIIVAKNT---------------ALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~---------------~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
+..... +.++++ ...+|++|+.+. +. |++.+. ...+..++.||+||||||+.|..+.+
T Consensus 100 ~~~~~~~~~~~v~~-~~~~v~~ID~~~--k~--V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~i 174 (502)
T 4g6h_A 100 IVNFALKKKGNVTY-YEAEATSINPDR--NT--VTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGI 174 (502)
T ss_dssp HHHHHTTCSSCEEE-EEEEEEEEEGGG--TE--EEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTC
T ss_pred HHHHHHhhcCCeEE-EEEEEEEEEhhh--CE--EEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCc
Confidence 222221 224443 345788888876 55 443321 11234689999999999999999999
Q ss_pred CCCCCCCcceeecCCCCCC-----------------CC-----CCCCeEEEEcCCCCHHHHHHHHhhCC-----------
Q 035902 146 PGLGSFEGEYMHSSKYENG-----------------GK-----FIGKNVLVVGCGNSGMEIAYDLSSCG----------- 192 (381)
Q Consensus 146 ~g~~~~~~~~~~~~~~~~~-----------------~~-----~~~~~v~viG~G~~~~e~a~~l~~~g----------- 192 (381)
||+++. .+......+. .. ....+++|||+|++|+|+|..|++.+
T Consensus 175 pG~~e~---a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~ 251 (502)
T 4g6h_A 175 PGVTDY---GHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPAL 251 (502)
T ss_dssp TTHHHH---CEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHH
T ss_pred cCcccc---cCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccc
Confidence 997542 1221111100 00 01347999999999999999988643
Q ss_pred ---CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccch
Q 035902 193 ---ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVG 269 (381)
Q Consensus 193 ---~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (381)
.+|+++.+.+ .++|..+.++...+.+
T Consensus 252 ~~~~~V~lve~~~-~il~~~~~~~~~~~~~-------------------------------------------------- 280 (502)
T 4g6h_A 252 AEEVQIHLVEALP-IVLNMFEKKLSSYAQS-------------------------------------------------- 280 (502)
T ss_dssp HHHCEEEEECSSS-SSSTTSCHHHHHHHHH--------------------------------------------------
T ss_pred cccceeEEecccc-ccccCCCHHHHHHHHH--------------------------------------------------
Confidence 5799999999 7778766655555444
Q ss_pred hhhhhcCCCeEEccC--cceEeCCeEEE----cCC----cEeeccEEEEecCCCCCcc--hhccccCCcc-cccCCCCCC
Q 035902 270 AMDKIRKGEIQVFPS--ITSINRNEVEF----ENG----KIEEFEAIIFATGYKSTVR--NWLKRADKDF-FDEYGMPKR 336 (381)
Q Consensus 270 ~~~~~~~~~v~~~~~--v~~v~~~~v~~----~~g----~~~~~D~vi~a~G~~p~~~--~~~~~~~~~~-~~~~g~~~~ 336 (381)
.+++.+|+++.+ |++++++++.+ +|| +++++|.+|||+|.+|++. .+.. . .+. .+..|++.|
T Consensus 281 ---~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~-~-~~~~~~~~g~I~V 355 (502)
T 4g6h_A 281 ---HLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFK-K-IPEQNSSKRGLAV 355 (502)
T ss_dssp ---HHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHH-H-SGGGTTCCSSEEB
T ss_pred ---HHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHH-h-ccccccCCCceeE
Confidence 446778999988 99999887654 345 3699999999999999852 2222 2 333 567889999
Q ss_pred CCCCCCC-CCCcEEEEeccccccc-----CccHHHHHHHHHhhhc
Q 035902 337 NCPNHWK-GENGLYCAGFSRTGLH-----GISIDAKNIANDINLA 375 (381)
Q Consensus 337 ~~~~~~~-~~~~ifa~Gd~~~~~~-----~a~~~a~~~a~~i~~~ 375 (381)
| +.+++ +.|||||+|||+..+. .|..||+.+|+||.+.
T Consensus 356 d-~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 356 N-DFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKM 399 (502)
T ss_dssp C-TTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred C-CccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9 45554 8899999999976532 8999999999999764
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=256.35 Aligned_cols=302 Identities=16% Similarity=0.184 Sum_probs=190.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC-C-------CCCCCcCC-CCCCCeeeecC-------CcccccCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE-D-------CSASLWKK-RAYDRMKLHLA-------KQFCELPHMPF 66 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~-~-------~~g~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~ 66 (381)
++||+||||||||+++|..|++.|.+|+|||+. + .+||.|.. .+++...+... .....+ ....
T Consensus 107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~-g~~~ 185 (598)
T 2x8g_A 107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF-GWSL 185 (598)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC-Cccc
Confidence 489999999999999999999999999999973 2 24443321 11111000000 000000 0111
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-----------HHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEc
Q 035902 67 PSRTPTFVPRISFINYVDNYV-----------SQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
+.. .......++.++++... +..+++++.+ ....++ . .. +...+. .++...+.||+||+|
T Consensus 186 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~--~--~~--v~v~~~-~g~~~~~~~d~lviA 256 (598)
T 2x8g_A 186 DRS-KISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLIS--P--HE--VQITDK-NQKVSTITGNKIILA 256 (598)
T ss_dssp CGG-GCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEE--T--TE--EEEECT-TCCEEEEEEEEEEEC
T ss_pred cCC-cCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcC--C--CE--EEEEeC-CCCeEEEEeCEEEEe
Confidence 000 01233445555544333 2334444322 222222 1 22 333321 122357999999999
Q ss_pred cCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHH
Q 035902 136 TGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGM 215 (381)
Q Consensus 136 tG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~ 215 (381)
||+.|..|++||.+.+ ..++.+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.|. .++|..+.++..
T Consensus 257 tGs~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~l~~~d~~~~~ 330 (598)
T 2x8g_A 257 TGERPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS--ILLRGFDQQMAE 330 (598)
T ss_dssp CCEEECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CSSTTSCHHHHH
T ss_pred CCCCCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC--cCcCcCCHHHHH
Confidence 9999999988886432 2344333322 235789999999999999999999999999999987 455554444433
Q ss_pred HHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEe----
Q 035902 216 LLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN---- 289 (381)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~---- 289 (381)
.+. +.+++.+|+++.+ ++++.
T Consensus 331 ~~~-----------------------------------------------------~~l~~~gv~i~~~~~v~~v~~~~~ 357 (598)
T 2x8g_A 331 KVG-----------------------------------------------------DYMENHGVKFAKLCVPDEIKQLKV 357 (598)
T ss_dssp HHH-----------------------------------------------------HHHHHTTCEEEETEEEEEEEEEEC
T ss_pred HHH-----------------------------------------------------HHHHhCCCEEEECCeEEEEEeccc
Confidence 332 2334556676665 44442
Q ss_pred ----C---CeEE----EcCCcEee--ccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccc
Q 035902 290 ----R---NEVE----FENGKIEE--FEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSR 355 (381)
Q Consensus 290 ----~---~~v~----~~~g~~~~--~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~ 355 (381)
. +.+. +.+|++++ +|.|++|+|++|+++.+.. +..++ ++++|++.+| +.++|+.|||||+|||+
T Consensus 358 ~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~-~~~gl~~~~~G~i~vd-~~~~ts~~~VyA~GD~~ 435 (598)
T 2x8g_A 358 VDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLC-ETVGVKLDKNGRVVCT-DDEQTTVSNVYAIGDIN 435 (598)
T ss_dssp CBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBC-GGGCCCBCTTSCBCCC-TTSBCSSTTEEECGGGB
T ss_pred cccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCc-hhcCceECCCCcEEeC-CCCcCCCCCEEEEeeec
Confidence 1 2232 35776555 9999999999999865422 33566 7788999999 45678999999999995
Q ss_pred cc-cc---CccHHHHHHHHHhhhc
Q 035902 356 TG-LH---GISIDAKNIANDINLA 375 (381)
Q Consensus 356 ~~-~~---~a~~~a~~~a~~i~~~ 375 (381)
.+ +. .|..||+.+|++|.+.
T Consensus 436 ~~~~~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 436 AGKPQLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccHHHHHHhHHHHHHHHhcC
Confidence 43 32 7899999999999864
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-32 Score=254.19 Aligned_cols=291 Identities=16% Similarity=0.165 Sum_probs=193.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHh-C------CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNN-L------SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTF 73 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~-~------g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (381)
|+.+||+||||||||+++|..|++ . +.+|+|||+.+.++|.|+.... +.+
T Consensus 1 m~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~-----------------------p~~ 57 (456)
T 1lqt_A 1 MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVA-----------------------PDH 57 (456)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSC-----------------------TTC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccC-----------------------CCC
Confidence 778999999999999999999999 7 8999999999888776643210 223
Q ss_pred CCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCCCCCCCCC
Q 035902 74 VPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEVPGLGSFE 152 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~~g~~~~~ 152 (381)
+...++..++.+.+++.+++++.+..+ + .. |.+.++ .+.||+||+|||+. +..+++||.+ +.
T Consensus 58 ~~~~~~~~~~~~~~~~~~v~~~~~v~v------~--~~--v~~~~~------~~~~d~lViAtG~~~~~~~~ipG~~-~~ 120 (456)
T 1lqt_A 58 PKIKSISKQFEKTAEDPRFRFFGNVVV------G--EH--VQPGEL------SERYDAVIYAVGAQSDRMLNIPGED-LP 120 (456)
T ss_dssp TGGGGGHHHHHHHHTSTTEEEEESCCB------T--TT--BCHHHH------HHHSSEEEECCCCCEECCCCCTTTT-ST
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeEEE------C--CE--EEECCC------eEeCCEEEEeeCCCCCCCCCCCCCC-CC
Confidence 334567777777777778777666432 1 22 444332 47899999999998 7888899876 34
Q ss_pred cceeecCCC-----------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhC--------------------C-CeeEEEEe
Q 035902 153 GEYMHSSKY-----------ENGGKFIGKNVLVVGCGNSGMEIAYDLSSC--------------------G-ACTSIVVR 200 (381)
Q Consensus 153 ~~~~~~~~~-----------~~~~~~~~~~v~viG~G~~~~e~a~~l~~~--------------------g-~~v~~i~r 200 (381)
+ +++..++ .+...+.+++++|||+|.+|+|+|..|++. + .+|+++.|
T Consensus 121 g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r 199 (456)
T 1lqt_A 121 G-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGR 199 (456)
T ss_dssp T-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECS
T ss_pred C-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEec
Confidence 3 4443221 122234689999999999999999999974 5 48999999
Q ss_pred cCcceechhhH-HHHHH---------------------HHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCccccc
Q 035902 201 GPVHVLTREIV-FAGML---------------------LLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKA 258 (381)
Q Consensus 201 ~~~~~~p~~~~-~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (381)
++ .+.+.+.. ++... ....++ .........
T Consensus 200 ~~-~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------------------- 251 (456)
T 1lqt_A 200 RG-PLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVG-KVCKQNIKV-------------------------- 251 (456)
T ss_dssp SC-GGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHC-HHHHHHHHH--------------------------
T ss_pred CC-hhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhcc-HHHHHHHHH--------------------------
Confidence 98 44332211 00000 000000 000000000
Q ss_pred ccCCCccccchhhhhhcC------CCeEEccC--cceEeCC----eEEEc----------------CC--cEeeccEEEE
Q 035902 259 ITGQTPTIDVGAMDKIRK------GEIQVFPS--ITSINRN----EVEFE----------------NG--KIEEFEAIIF 308 (381)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~------~~v~~~~~--v~~v~~~----~v~~~----------------~g--~~~~~D~vi~ 308 (381)
+.+.+++ .+|+++.+ +.++.++ ++.++ +| ++++||.||+
T Consensus 252 -----------l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~ 320 (456)
T 1lqt_A 252 -----------LRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVR 320 (456)
T ss_dssp -----------HHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEE
T ss_pred -----------HHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEE
Confidence 0111122 56777776 6666553 25553 34 4689999999
Q ss_pred ecCCCCCcchhccccCCcccccCCCCCCCCCCCC-CCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 309 ATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHW-KGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 309 a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
|+|++|++. . + .. ++++|.+.+| +..+ ++.||||++|||..++. .|+.+|..+|++|...+..
T Consensus 321 a~G~~p~~l---~-g-l~-~d~~g~i~vn-~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l~~ 388 (456)
T 1lqt_A 321 SVGYRGVPT---P-G-LP-FDDQSGTIPN-VGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGN 388 (456)
T ss_dssp CSCEECCCC---T-T-SC-CBTTTTBCCE-ETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCC---C-C-Cc-ccCCCCeeEC-CCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999971 2 1 11 5677888887 3344 78999999999986544 5889999999999987753
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=267.07 Aligned_cols=277 Identities=17% Similarity=0.232 Sum_probs=188.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
.+||+||||||||+++|..|++.|+ +|+|||+.+.+||.+... .+. +....++.+
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~---------------ip~---------~~~~~~~~~ 242 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE---------------IPQ---------FRLPYDVVN 242 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT---------------SCT---------TTSCHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccccc---------------CCc---------ccCCHHHHH
Confidence 3789999999999999999999999 799999998888754221 111 111235666
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC-CCCCCC-CCCCCCCcceeecC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN-GLIPEV-PGLGSFEGEYMHSS 159 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~-~~~~~~-~g~~~~~~~~~~~~ 159 (381)
+..+++++.++++++++.+.. .. +++.++ ..+.||+||+|||+. |..+++ +|++...+ +++..
T Consensus 243 ~~~~~~~~~gv~~~~~~~v~~-------~~--v~~~~~-----~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~g-v~~a~ 307 (1025)
T 1gte_A 243 FEIELMKDLGVKIICGKSLSE-------NE--ITLNTL-----KEEGYKAAFIGIGLPEPKTDDIFQGLTQDQG-FYTSK 307 (1025)
T ss_dssp HHHHHHHTTTCEEEESCCBST-------TS--BCHHHH-----HHTTCCEEEECCCCCEECCCGGGTTCCTTTT-EEEHH
T ss_pred HHHHHHHHCCcEEEcccEecc-------ce--EEhhhc-----CccCCCEEEEecCCCCCCCCCCCCCCCCCCC-EEEhH
Confidence 666777888998887776521 11 333332 346799999999995 776554 45543222 33322
Q ss_pred CCC--------------C-CCCCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 160 KYE--------------N-GGKFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 160 ~~~--------------~-~~~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++. . .....+++++|||||.+|+|+|..+.++|. +|++++|++...+|..+.++
T Consensus 308 ~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~---------- 377 (1025)
T 1gte_A 308 DFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV---------- 377 (1025)
T ss_dssp HHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH----------
T ss_pred HHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH----------
Confidence 211 1 112246799999999999999999999996 89999998843444333221
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce---EEEc
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE---VEFE 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~---v~~~ 296 (381)
+.+++.+++++.. +.++.. +. +.+.
T Consensus 378 ------------------------------------------------~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~ 409 (1025)
T 1gte_A 378 ------------------------------------------------ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFV 409 (1025)
T ss_dssp ------------------------------------------------HHHHHTTCEEECSEEEEEEEEETTEEEEEEEE
T ss_pred ------------------------------------------------HHHHHcCCEEEeCCCceEEEccCCeEEEEEEE
Confidence 1122234444333 333321 11 2111
Q ss_pred -------------CC--cEeeccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc-
Q 035902 297 -------------NG--KIEEFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH- 359 (381)
Q Consensus 297 -------------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~- 359 (381)
+| +++++|.||+|+|++|+...++. +..++ ++++|++.+|...++|+.|+|||+||+++++.
T Consensus 410 ~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~-~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~ 488 (1025)
T 1gte_A 410 RTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKE-ALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANT 488 (1025)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHH-HTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCC
T ss_pred EeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhh-cccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchH
Confidence 12 47899999999999876545554 43456 77889999994357789999999999998654
Q ss_pred --CccHHHHHHHHHhhhccc
Q 035902 360 --GISIDAKNIANDINLALT 377 (381)
Q Consensus 360 --~a~~~a~~~a~~i~~~l~ 377 (381)
.|+.||+.+|++|.++|.
T Consensus 489 ~~~A~~~G~~aA~~i~~~L~ 508 (1025)
T 1gte_A 489 TVESVNDGKQASWYIHKYIQ 508 (1025)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998764
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=252.28 Aligned_cols=301 Identities=15% Similarity=0.215 Sum_probs=192.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeec--C-----CcccccCCC----CCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHL--A-----KQFCELPHM----PFPS 68 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~--~-----~~~~~~~~~----~~~~ 68 (381)
+++||+|||||+||++||..|++. +.+|+|||+++.++. ......+..... + ..+..+... .+..
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y--~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY--MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP 87 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB--CSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC--CCCCCCHHhhcCCccchhhcccccccccccccccccc
Confidence 458999999999999999999887 789999999976642 111000000000 0 000000000 0000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 69 RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
...+....++.+ ..+.+++++++++|.+++... . .|.+.++ ..+.||+||+|||+.|..|++++.
T Consensus 88 -~~~~~~~~~l~~-----~~~~gv~~~~g~~v~~id~~~--~--~V~~~~g-----~~i~yd~lviATGs~p~~~~~~~~ 152 (493)
T 1m6i_A 88 -PSFYVSAQDLPH-----IENGGVAVLTGKKVVQLDVRD--N--MVKLNDG-----SQITYEKCLIATGGTPRSLSAIDR 152 (493)
T ss_dssp -GGGSBCTTTTTT-----STTCEEEEEETCCEEEEEGGG--T--EEEETTS-----CEEEEEEEEECCCEEECCCHHHHT
T ss_pred -hHhhcchhhhhh-----hhcCCeEEEcCCEEEEEECCC--C--EEEECCC-----CEEECCEEEECCCCCCCCCCCccc
Confidence 000111111110 123577888888999998754 3 3777765 579999999999999887665442
Q ss_pred C--CCCcceeecCCCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhh----CCCeeEEEEecCcceechhhHHHHHHH
Q 035902 149 G--SFEGEYMHSSKYENG-----GKFIGKNVLVVGCGNSGMEIAYDLSS----CGACTSIVVRGPVHVLTREIVFAGMLL 217 (381)
Q Consensus 149 ~--~~~~~~~~~~~~~~~-----~~~~~~~v~viG~G~~~~e~a~~l~~----~g~~v~~i~r~~~~~~p~~~~~~~~~~ 217 (381)
. .+...+.......+. ....+++++|||+|.+|+|+|..|++ .|.+|+++.+.+ .++++.
T Consensus 153 ~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~-~~~~~~-------- 223 (493)
T 1m6i_A 153 AGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK-GNMGKI-------- 223 (493)
T ss_dssp SCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS-STTTTT--------
T ss_pred ccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc-cccccc--------
Confidence 1 111112222221110 01248999999999999999999987 467899998876 222211
Q ss_pred HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--
Q 035902 218 LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N-- 291 (381)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~-- 291 (381)
++.. +...+.+.+++.+|+++.+ |++++. +
T Consensus 224 ---l~~~-----------------------------------------~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~ 259 (493)
T 1m6i_A 224 ---LPEY-----------------------------------------LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKL 259 (493)
T ss_dssp ---SCHH-----------------------------------------HHHHHHHHHHTTTCEEECSCCEEEEEEETTEE
T ss_pred ---CCHH-----------------------------------------HHHHHHHHHHhcCCEEEeCCEEEEEEecCCeE
Confidence 1110 1111245567788999887 888753 2
Q ss_pred eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcc-ccc-CCCCCCCCCCCCCCCCcEEEEecccccc----------c
Q 035902 292 EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDF-FDE-YGMPKRNCPNHWKGENGLYCAGFSRTGL----------H 359 (381)
Q Consensus 292 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~ifa~Gd~~~~~----------~ 359 (381)
.+.+.+|+++++|.||+|+|.+|+++ ++. . .++ +++ +|.+.+| +.+++ .|||||+|||+..+ .
T Consensus 260 ~v~l~dG~~i~aD~Vv~a~G~~pn~~-l~~-~-~gl~~~~~~ggi~Vd-~~l~t-~~~IyA~GD~a~~~~~~~g~~~~~~ 334 (493)
T 1m6i_A 260 LIKLKDGRKVETDHIVAAVGLEPNVE-LAK-T-GGLEIDSDFGGFRVN-AELQA-RSNIWVAGDAACFYDIKLGRRRVEH 334 (493)
T ss_dssp EEEETTSCEEEESEEEECCCEEECCT-THH-H-HTCCBCTTTCSEECC-TTCEE-ETTEEECGGGEEEEETTTEEECCCC
T ss_pred EEEECCCCEEECCEEEECCCCCccHH-HHH-H-cCCccccCCCcEEEC-CCccc-CCCeeEeeeeEeccCcccCccccch
Confidence 46778999999999999999999986 333 2 455 554 5788888 34444 69999999997632 1
Q ss_pred --CccHHHHHHHHHhhhccc
Q 035902 360 --GISIDAKNIANDINLALT 377 (381)
Q Consensus 360 --~a~~~a~~~a~~i~~~l~ 377 (381)
.|..||+.+|+||.+...
T Consensus 335 ~~~A~~qg~~aa~ni~g~~~ 354 (493)
T 1m6i_A 335 HDHAVVSGRLAGENMTGAAK 354 (493)
T ss_dssp HHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 689999999999987543
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-30 Score=242.15 Aligned_cols=305 Identities=15% Similarity=0.115 Sum_probs=190.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
.+||+|||||++|+++|..|++.| .+|+|||+.+.++|.|+.... +.++...++.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~-----------------------p~~~~~~~~~ 62 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------PDHPEVKNVI 62 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------TTCGGGGGHH
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccC-----------------------CCCccHHHHH
Confidence 378999999999999999999998 899999999888776643211 1122334567
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC-CCCCCCCCCCCCcceeecC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG-LIPEVPGLGSFEGEYMHSS 159 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~-~~~~~~g~~~~~~~~~~~~ 159 (381)
.++.+.+++++++++.++.+. .. |.+.+ ..+.||+||+|||+.+ ..|++||.+ ..+ +++..
T Consensus 63 ~~~~~~~~~~gv~~~~~~~v~--------~~--V~~~~------~~~~~d~lVlAtGs~~~~~~~ipG~~-~~g-v~~~~ 124 (460)
T 1cjc_A 63 NTFTQTARSDRCAFYGNVEVG--------RD--VTVQE------LQDAYHAVVLSYGAEDHQALDIPGEE-LPG-VFSAR 124 (460)
T ss_dssp HHHHHHHTSTTEEEEBSCCBT--------TT--BCHHH------HHHHSSEEEECCCCCEECCCCCTTTT-STT-EEEHH
T ss_pred HHHHHHHHhCCcEEEeeeEEe--------eE--EEecc------ceEEcCEEEEecCcCCCCCCCCCCCC-CCc-EEEHH
Confidence 777778887888877776541 11 33332 2368999999999994 778899875 233 34332
Q ss_pred CC----------CCCC-CCCCCeEEEEcCCCCHHHHHHHHh--------------------hCCC-eeEEEEecCcceec
Q 035902 160 KY----------ENGG-KFIGKNVLVVGCGNSGMEIAYDLS--------------------SCGA-CTSIVVRGPVHVLT 207 (381)
Q Consensus 160 ~~----------~~~~-~~~~~~v~viG~G~~~~e~a~~l~--------------------~~g~-~v~~i~r~~~~~~p 207 (381)
++ .... .+.+++++|||+|.+|+|+|..|+ +.+. +|+++.|++....+
T Consensus 125 ~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ 204 (460)
T 1cjc_A 125 AFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVA 204 (460)
T ss_dssp HHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCC
T ss_pred HHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhc
Confidence 22 1111 235899999999999999999999 5676 79999999832121
Q ss_pred hhhHHHHHHH--------------------HhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCcccc
Q 035902 208 REIVFAGMLL--------------------LKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTID 267 (381)
Q Consensus 208 ~~~~~~~~~~--------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (381)
....++.... ...++. ..........+........++..
T Consensus 205 ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~-------------------- 263 (460)
T 1cjc_A 205 FTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAAR-PRKRLMELLLRTATEKPGVEEAA-------------------- 263 (460)
T ss_dssp CCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCH-HHHHHHHHHHHHHHSCCCHHHHH--------------------
T ss_pred cCHHHHHHhhcCCCceeEechhhhcchhhhhhhccH-HHHHHHHHHHHHHHhcccccccc--------------------
Confidence 1111111100 000000 00000000000000000000000
Q ss_pred chhhhhhcCCCeEEccC--cceEeCC-------eEEEc---------------CC--cEeeccEEEEecCCCCCcchhcc
Q 035902 268 VGAMDKIRKGEIQVFPS--ITSINRN-------EVEFE---------------NG--KIEEFEAIIFATGYKSTVRNWLK 321 (381)
Q Consensus 268 ~~~~~~~~~~~v~~~~~--v~~v~~~-------~v~~~---------------~g--~~~~~D~vi~a~G~~p~~~~~~~ 321 (381)
.......+|+++.. +.++.++ ++.+. +| ++++||.||+++|++|++. .
T Consensus 264 ---~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l---~ 337 (460)
T 1cjc_A 264 ---RRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI---D 337 (460)
T ss_dssp ---HHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCC---C
T ss_pred ---CCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCC---C
Confidence 00011256777766 6666432 24432 34 5799999999999999972 2
Q ss_pred ccCCcccccCCCCCCCCCCCCCC-CCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 322 RADKDFFDEYGMPKRNCPNHWKG-ENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 322 ~~~~~~~~~~g~~~~~~~~~~~~-~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
+ ..-++++|.+.+| +..+++ .|+|||+|||..++. .|+.+|..+|++|...+..
T Consensus 338 -g-l~~~d~~g~i~vn-~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~~l~~ 396 (460)
T 1cjc_A 338 -P-SVPFDPKLGVVPN-MEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKA 396 (460)
T ss_dssp -T-TSCCBTTTTBCCE-ETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -C-CcccccCCCeeEC-CCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2025667888888 455666 699999999987544 6889999999999988754
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-30 Score=254.46 Aligned_cols=266 Identities=15% Similarity=0.119 Sum_probs=196.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+|||||++|+++|+.|+++|.+|+|||+++.+||.|.... ..+......++.++
T Consensus 391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~----------------------~~p~~~~~~~~~~~ 448 (690)
T 3k30_A 391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQES----------------------ALPGLSAWGRVKEY 448 (690)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHH----------------------TSTTCGGGGHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeecc----------------------CCCchhHHHHHHHH
Confidence 37999999999999999999999999999999998888654210 01222234577888
Q ss_pred HHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC--------CCCCCCCCCCCCCc
Q 035902 83 VDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN--------GLIPEVPGLGSFEG 153 (381)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--------~~~~~~~g~~~~~~ 153 (381)
+...++++ ++++++++++ ...+. ..+.||+||+|||+. |..|.++|.+. .
T Consensus 449 ~~~~~~~~~gv~~~~~~~v--------------~~~~~-----~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~--~ 507 (690)
T 3k30_A 449 REAVLAELPNVEIYRESPM--------------TGDDI-----VEFGFEHVITATGATWRTDGVARFHTTALPIAEG--M 507 (690)
T ss_dssp HHHHHHTCTTEEEESSCCC--------------CHHHH-----HHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTT--S
T ss_pred HHHHHHHcCCCEEEECCee--------------cHHHH-----hhcCCCEEEEcCCCccccccccccCCCCCCCCCC--C
Confidence 88888876 7777666433 11121 457899999999998 44677888763 3
Q ss_pred ceeecCCCCCCCCCCCCeEEEEc--CCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHH
Q 035902 154 EYMHSSKYENGGKFIGKNVLVVG--CGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVV 231 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~viG--~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 231 (381)
.+++..++.......+++++||| +|.+|+|+|..|.+.|.+|+++.+.+ .+++.....
T Consensus 508 ~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~-~l~~~~~~~------------------- 567 (690)
T 3k30_A 508 QVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGA-QVSSWTNNT------------------- 567 (690)
T ss_dssp EEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSS-STTGGGGGG-------------------
T ss_pred cEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccc-ccccccccc-------------------
Confidence 45666555555455678999999 99999999999999999999999988 443332110
Q ss_pred HHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEc-----CCcEeecc
Q 035902 232 MLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFE-----NGKIEEFE 304 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~-----~g~~~~~D 304 (381)
.....+.+.+++.+|+++.+ |++++.+++.+. +++++++|
T Consensus 568 ---------------------------------~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD 614 (690)
T 3k30_A 568 ---------------------------------FEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECD 614 (690)
T ss_dssp ---------------------------------TCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECS
T ss_pred ---------------------------------hhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECC
Confidence 01112355567789999988 999988876553 45689999
Q ss_pred EEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc--CccHHHHHHHHHhhhcccc
Q 035902 305 AIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH--GISIDAKNIANDINLALTD 378 (381)
Q Consensus 305 ~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~--~a~~~a~~~a~~i~~~l~~ 378 (381)
.||+|+|++|+...+.. .+ ..+. .++.|+||++|||..... .|..||..+|++|.+.|..
T Consensus 615 ~VV~A~G~~p~~~l~~~---l~---~~~~--------~t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l~g 676 (690)
T 3k30_A 615 AVVMVTARLPREELYLD---LV---ARRD--------AGEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVLPS 676 (690)
T ss_dssp EEEEESCEEECCHHHHH---HH---HHHH--------HTSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEEECCCCCCChHHHHH---Hh---hhhc--------ccCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999863322 11 1111 456789999999988655 8999999999999998754
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=250.02 Aligned_cols=279 Identities=16% Similarity=0.172 Sum_probs=192.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+|||||+||+++|..|++.|.+|+|||+++.+||.+.. . +... + +. ....++...
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~-~-~k~~---------i---------~~-~~~~~~~~~ 186 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD-T-AGEQ---------I---------DG-MDSSAWIEQ 186 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG-S-SCCE---------E---------TT-EEHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc-C-Cccc---------c---------CC-CCHHHHHHH
Confidence 479999999999999999999999999999999888886652 1 1000 0 00 113345555
Q ss_pred HHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeec-C---------CCceEEEEeCEEEEccCCCCCCCCCCCCCCC
Q 035902 83 VDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNT-A---------LDAYEEYVARYLVVATGENGLIPEVPGLGSF 151 (381)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~-~---------~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~ 151 (381)
+.+.+.++ +++++.+++|.++.... ....+..... . ......+.||+||+|||+.|..|++||.+.
T Consensus 187 ~~~~l~~~~~v~~~~~~~V~~i~~~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~- 263 (965)
T 2gag_A 187 VTSELAEAEETTHLQRTTVFGSYDAN--YLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDR- 263 (965)
T ss_dssp HHHHHHHSTTEEEESSEEEEEEETTT--EEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCS-
T ss_pred HHHHHhhcCCcEEEeCCEEEeeecCC--ceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCC-
Confidence 55555554 88888898998886432 1111110000 0 011247999999999999998888988764
Q ss_pred CcceeecCC---CCCC-CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHH
Q 035902 152 EGEYMHSSK---YENG-GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVD 227 (381)
Q Consensus 152 ~~~~~~~~~---~~~~-~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~ 227 (381)
++ +++... +... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+++ .+.+.
T Consensus 264 ~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~-~~~~~------------------- 322 (965)
T 2gag_A 264 PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARS-SISAA------------------- 322 (965)
T ss_dssp TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS-SCCHH-------------------
T ss_pred CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC-ccchh-------------------
Confidence 33 444321 1111 22356899999999999999999999999999999987 33221
Q ss_pred HHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C----eEEEcC--
Q 035902 228 FIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N----EVEFEN-- 297 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~----~v~~~~-- 297 (381)
.+.+++.+|+++.+ +.++.. + ++.+.+
T Consensus 323 -------------------------------------------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~ 359 (965)
T 2gag_A 323 -------------------------------------------AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELD 359 (965)
T ss_dssp -------------------------------------------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEEC
T ss_pred -------------------------------------------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEecc
Confidence 12234567777777 777764 2 466654
Q ss_pred -----C--cEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCC----CCCCCcEEEEeccccccc--CccHH
Q 035902 298 -----G--KIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNH----WKGENGLYCAGFSRTGLH--GISID 364 (381)
Q Consensus 298 -----g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~ifa~Gd~~~~~~--~a~~~ 364 (381)
| +++++|.|++++|++|++..+.. . .|.+.+|.... .++.|+||++|||++... .|..|
T Consensus 360 ~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~-~-------~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l~~A~~~ 431 (965)
T 2gag_A 360 EARELGGTQRFEADVLAVAGGFNPVVHLHSQ-R-------QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDTASALST 431 (965)
T ss_dssp TTCCEEEEEEEECSEEEEECCEEECCHHHHH-T-------TCCEEEETTTTEEEECSCCTTEEECGGGGTCCSHHHHHHH
T ss_pred ccCCCCceEEEEcCEEEECCCcCcChHHHHh-C-------CCcEEEcCcccccccCCCCCCEEEEEecCCchhHHHHHHH
Confidence 4 68999999999999999864333 2 23344441111 267899999999987655 88899
Q ss_pred HHHHHHHhhhccc
Q 035902 365 AKNIANDINLALT 377 (381)
Q Consensus 365 a~~~a~~i~~~l~ 377 (381)
|+.+|.+|.+.+.
T Consensus 432 G~~aA~~i~~~lg 444 (965)
T 2gag_A 432 GAATGAAAATAAG 444 (965)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988763
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=250.76 Aligned_cols=277 Identities=18% Similarity=0.218 Sum_probs=187.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+|||||+||+++|..|+++|++|+|||+++.+||.|.... . .+.......+.++
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~----------------~------~pg~~~~~~~~~~ 446 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA----------------A------LPGLGEWSYHRDY 446 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHT----------------T------STTCGGGHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecc----------------c------CCChHHHHHHHHH
Confidence 37999999999999999999999999999999998888664310 0 0111122345555
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC--------CCCCCCCCCCCCCcc
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN--------GLIPEVPGLGSFEGE 154 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--------~~~~~~~g~~~~~~~ 154 (381)
++..++... ..+..+..+.. + .. +.+.++ ..+.||+||+|||+. |..|++||.+.+...
T Consensus 447 ~~~~i~~~~---~~~~~~v~i~~-~--~~--v~~~~~-----~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~ 513 (729)
T 1o94_A 447 RETQITKLL---KKNKESQLALG-Q--KP--MTADDV-----LQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPD 513 (729)
T ss_dssp HHHHHHHHH---HHSTTCEEECS-C--CC--CCHHHH-----HTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTT
T ss_pred HHHHHHHhh---cccCCceEEEe-C--eE--Eehhhc-----cccCCCEEEEcCCCCcccccccCccCCCCCCccccCCC
Confidence 555444330 00111111211 0 11 333332 357899999999998 466778887744444
Q ss_pred eeecCCCCCCCCCCCCeEEEEc--CCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 155 YMHSSKYENGGKFIGKNVLVVG--CGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~viG--~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
+++..++.......+++++||| +|.+|+|+|..|++.|.+|++++|.+ +++....+.
T Consensus 514 v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~--l~~~~~~~~------------------- 572 (729)
T 1o94_A 514 QLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH--LANYMHFTL------------------- 572 (729)
T ss_dssp EECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC--TTHHHHHTT-------------------
T ss_pred EEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc--ccccccccc-------------------
Confidence 6666555444444678999999 99999999999999999999999887 323210000
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEc----CC-cE-----
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFE----NG-KI----- 300 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~----~g-~~----- 300 (381)
....+.+.+++.+|+++.+ ++++..+++.+. ++ +.
T Consensus 573 ---------------------------------~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~ 619 (729)
T 1o94_A 573 ---------------------------------EYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGP 619 (729)
T ss_dssp ---------------------------------CHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCT
T ss_pred ---------------------------------cHHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccc
Confidence 0011244556778888888 888887765442 33 33
Q ss_pred -------------eeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc--CccHHH
Q 035902 301 -------------EEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH--GISIDA 365 (381)
Q Consensus 301 -------------~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~--~a~~~a 365 (381)
+++|.||+|+|.+|+... +. + .+. .++ +.++++.|+||++|||..... .|+.||
T Consensus 620 ~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l-~~-~-l~~-------~vd-~~~~t~~~~VyAiGD~~~~~~~~~A~~~G 688 (729)
T 1o94_A 620 GVSPRDANTSHRWIEFDSLVLVTGRHSECTL-WN-E-LKA-------RES-EWAENDIKGIYLIGDAEAPRLIADATFTG 688 (729)
T ss_dssp TSCSSCCCCCCEEEECSEEEEESCEEECCHH-HH-H-HHH-------TGG-GTGGGTCCEEEECGGGTSCCCHHHHHHHH
T ss_pred cccccccCCcceeeeCCEEEECCCCCCChHH-HH-H-Hhh-------hcc-cccccCCCCeEEEeCccchhhHHHHHHHH
Confidence 899999999999999853 33 2 211 123 344577899999999987544 799999
Q ss_pred HHHHHHhhhccccC
Q 035902 366 KNIANDINLALTDH 379 (381)
Q Consensus 366 ~~~a~~i~~~l~~~ 379 (381)
+.+|++|.+.+...
T Consensus 689 ~~aA~~i~~~l~~~ 702 (729)
T 1o94_A 689 HRVAREIEEANPQI 702 (729)
T ss_dssp HHHHHTTTSSCTTS
T ss_pred HHHHHHhhhhcccC
Confidence 99999999877543
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=232.88 Aligned_cols=288 Identities=15% Similarity=0.099 Sum_probs=184.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
++|+|||||+||+++|.+|++.+ .+|+|||+++......... ... ....+.+++..
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~--------------~v~--------~g~~~~~~~~~ 60 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSN--------------EVI--------GGDRELASLRV 60 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHH--------------HHH--------HTSSCGGGGEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHH--------------HHh--------cCCCCHHHHhh
Confidence 78999999999999999999876 4899999986321100000 000 00001111111
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcc-eeecCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGE-YMHSSK 160 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~-~~~~~~ 160 (381)
.++. +...+++++. .+|++++.+. +. +.+.++ .++.||+||+|||+.+..+.++|.++..+. ..+...
T Consensus 61 ~~~~-~~~~gv~~i~-~~v~~id~~~--~~--v~~~~g-----~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~ 129 (401)
T 3vrd_B 61 GYDG-LRAHGIQVVH-DSALGIDPDK--KL--VKTAGG-----AEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWK 129 (401)
T ss_dssp CSHH-HHHTTCEEEC-SCEEEEETTT--TE--EEETTS-----CEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSS
T ss_pred CHHH-HHHCCCEEEE-eEEEEEEccC--cE--EEeccc-----ceeecceeeeccCCccccCCccCchhhcccCccceec
Confidence 1122 2335777654 5688888765 44 777776 689999999999999998889987753221 112211
Q ss_pred CCCC--------CCCCCCeEEEEcCCCC-----------HHHHHHHHhhCC--CeeEEEEecCcceechhhHHHHHHHHh
Q 035902 161 YENG--------GKFIGKNVLVVGCGNS-----------GMEIAYDLSSCG--ACTSIVVRGPVHVLTREIVFAGMLLLK 219 (381)
Q Consensus 161 ~~~~--------~~~~~~~v~viG~G~~-----------~~e~a~~l~~~g--~~v~~i~r~~~~~~p~~~~~~~~~~~~ 219 (381)
..+. ........+|+++|.. +++++..+.+.+ .+|+++.+.+ .+.+.. .+...+.+
T Consensus 130 ~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~-~~~~~~--~~~~~~~~ 206 (401)
T 3vrd_B 130 AGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQ-TFSKQA--QFTKGWER 206 (401)
T ss_dssp CSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSS-SCTTHH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccc-cccccc--cccHHHHH
Confidence 1110 0122344455544332 345566666555 5799988777 331111 11111111
Q ss_pred hCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eE
Q 035902 220 FLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EV 293 (381)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v 293 (381)
. +...+++.+++++.+ +..++.+ .+
T Consensus 207 ~-------------------------------------------------~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v 237 (401)
T 3vrd_B 207 L-------------------------------------------------YGFGTENALIEWHPGPDAAVVKTDTEAMTV 237 (401)
T ss_dssp H-------------------------------------------------SCTTSTTCSEEEECTTTTCEEEEETTTTEE
T ss_pred H-------------------------------------------------HHHHHHhcCcEEEeCceEEEEEecccceEE
Confidence 1 133456778888877 6665432 58
Q ss_pred EEcCCcEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCC-CCCCCcEEEEecccccc---c---CccHHHH
Q 035902 294 EFENGKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNH-WKGENGLYCAGFSRTGL---H---GISIDAK 366 (381)
Q Consensus 294 ~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ifa~Gd~~~~~---~---~a~~~a~ 366 (381)
.+++|+++++|.+++++|.+|+. ++. . .++.++.|++.||...+ .++.|||||+|||++.. . .|..||+
T Consensus 238 ~~~~g~~i~~D~vi~~~g~~~~~--~~~-~-~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~ 313 (401)
T 3vrd_B 238 ETSFGETFKAAVINLIPPQRAGK--IAQ-S-ASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAK 313 (401)
T ss_dssp EETTSCEEECSEEEECCCEEECH--HHH-H-TTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHH
T ss_pred EcCCCcEEEeeEEEEecCcCCch--hHh-h-ccccccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHH
Confidence 88999999999999999999874 444 3 67789999999994433 47899999999997542 1 7889999
Q ss_pred HHHHHhhhccccCC
Q 035902 367 NIANDINLALTDHQ 380 (381)
Q Consensus 367 ~~a~~i~~~l~~~~ 380 (381)
.+|+||...|+..+
T Consensus 314 v~A~ni~~~l~G~~ 327 (401)
T 3vrd_B 314 VAAAAVVALLKGEE 327 (401)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999887543
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-30 Score=239.57 Aligned_cols=288 Identities=16% Similarity=0.134 Sum_probs=176.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRIS 78 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|+ ++|+|||||+||+++|..|++.+ .+|+|||+++...-. .+. .... ....+.++
T Consensus 1 M~-K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~-------p~l-------~~v~--------~g~~~~~~ 57 (430)
T 3hyw_A 1 MA-KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT-------PAF-------PHLA--------MGWRKFED 57 (430)
T ss_dssp -C-CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG-------GGH-------HHHH--------HTCSCGGG
T ss_pred CC-CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccC-------ccH-------HHHh--------cCCCCHHH
Confidence 75 68999999999999999999875 689999998732100 000 0000 00001111
Q ss_pred HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeec
Q 035902 79 FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHS 158 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~ 158 (381)
+...+++++++.+++++. .+|++|+.+. +. |+++++ +++.||+||+|||+.+. +++||.++. ....
T Consensus 58 i~~~~~~~~~~~gv~~i~-~~v~~Id~~~--~~--V~~~~g-----~~i~YD~LViAtG~~~~-~~i~G~~e~---~~~~ 123 (430)
T 3hyw_A 58 ISVPLAPLLPKFNIEFIN-EKAESIDPDA--NT--VTTQSG-----KKIEYDYLVIATGPKLV-FGAEGQEEN---STSI 123 (430)
T ss_dssp SEEESTTTGGGGTEEEEC-SCEEEEETTT--TE--EEETTC-----CEEECSEEEECCCCEEE-CCSBTHHHH---SCCC
T ss_pred hhhcHHHHHHHCCcEEEE-eEEEEEECCC--CE--EEECCC-----CEEECCEEEEeCCCCcc-CCccCcccC---cCCc
Confidence 111122344556777654 4799998765 54 888877 68999999999999854 356775431 1111
Q ss_pred CCCCCCC-------C-CCCCeEEEEcCCC------CHHHHHH----HHhhCC----CeeEEEEecCcceechhhHHHHHH
Q 035902 159 SKYENGG-------K-FIGKNVLVVGCGN------SGMEIAY----DLSSCG----ACTSIVVRGPVHVLTREIVFAGML 216 (381)
Q Consensus 159 ~~~~~~~-------~-~~~~~v~viG~G~------~~~e~a~----~l~~~g----~~v~~i~r~~~~~~p~~~~~~~~~ 216 (381)
+...+.. + ...+.++|+|++. .+.|++. .+.+.+ .+|+++...+ .+.+. ...
T Consensus 124 ~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~-~l~~~-~~~---- 197 (430)
T 3hyw_A 124 CTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEP-YLGHF-GVG---- 197 (430)
T ss_dssp SSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSS-STTCT-TTT----
T ss_pred ccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccc-hhhhc-cch----
Confidence 1111100 0 1234455665543 1234333 333444 3567776554 11110 000
Q ss_pred HHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEE
Q 035902 217 LLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVE 294 (381)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~ 294 (381)
..+.....+.+.+++.+|+++.+ |++++++++.
T Consensus 198 ---------------------------------------------~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~~~ 232 (430)
T 3hyw_A 198 ---------------------------------------------GIGASKRLVEDLFAERNIDWIANVAVKAIEPDKVI 232 (430)
T ss_dssp ---------------------------------------------CSTTHHHHHHHHHHHTTCEEECSCEEEEECSSEEE
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCceE
Confidence 00111112345667789999998 9999999887
Q ss_pred EcC----CcEeeccEEEEecCCCCCcchhccccCCccc-ccCCCCCCCCCCCC-CCCCcEEEEecccccc----------
Q 035902 295 FEN----GKIEEFEAIIFATGYKSTVRNWLKRADKDFF-DEYGMPKRNCPNHW-KGENGLYCAGFSRTGL---------- 358 (381)
Q Consensus 295 ~~~----g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~-~~~g~~~~~~~~~~-~~~~~ifa~Gd~~~~~---------- 358 (381)
+++ ++++++|.+++++|.+|+. .+.. ....+. +..|++.+| +.++ ++.|||||+|||+..+
T Consensus 233 ~~~~~g~~~~i~~d~vi~~~G~~~~~-~~~~-~~~~l~~~~~g~i~vd-~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~ 309 (430)
T 3hyw_A 233 YEDLNGNTHEVPAKFTMFMPSFQGPE-VVAS-AGDKVANPANKMVIVN-RCFQNPTYKNIFGVGVVTAIPPIEKTPIPTG 309 (430)
T ss_dssp EECTTSCEEEEECSEEEEECEEECCH-HHHT-TCTTTBCTTTCCBCCC-TTSBCSSSTTEEECSTTBCCCCSSCCSSCCC
T ss_pred EEeeCCCceEeecceEEEeccCCCch-HHHh-cccccccCCceEEEec-ccccCCCCCCEEEeccEEecCCcccCcCcCc
Confidence 764 3589999999999999984 2222 213343 446678888 4554 8899999999998642
Q ss_pred --c---CccHHHHHHHHHhhhccccC
Q 035902 359 --H---GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 359 --~---~a~~~a~~~a~~i~~~l~~~ 379 (381)
. .|..||+.+|+||...++..
T Consensus 310 ~pk~a~~A~~qg~~~A~Ni~~~l~g~ 335 (430)
T 3hyw_A 310 VPKTGMMIEQMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 68899999999999988764
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=238.97 Aligned_cols=287 Identities=15% Similarity=0.189 Sum_probs=180.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+||+|||||+||+++|..|++.|.+|+|||+++.+||.|.... . .+......++.++
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~----------------~------~~~~~~~~~~~~~ 430 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK----------------Q------IPGKEEFYETLRY 430 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT----------------T------STTCTTHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccc----------------c------CCCHHHHHHHHHH
Confidence 37999999999999999999999999999999988887653210 0 0111223456667
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEE-EeCEEEEccCCCCCCCCCCCCCCCCcceeecCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEY-VARYLVVATGENGLIPEVPGLGSFEGEYMHSSKY 161 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~ 161 (381)
+.+.++++++++++++.+.. ..+ .||+||+|||+.|..|.++|.+. ..+++..++
T Consensus 431 ~~~~~~~~gv~~~~~~~v~~----------------------~~~~~~d~lviAtG~~p~~~~i~G~~~--~~v~~~~~~ 486 (671)
T 1ps9_A 431 YRRMIEVTGVTLKLNHTVTA----------------------DQLQAFDETILASGIVPRTPPIDGIDH--PKVLSYLDV 486 (671)
T ss_dssp HHHHHHHHTCEEEESCCCCS----------------------SSSCCSSEEEECCCEEECCCCCBTTTS--TTEEEHHHH
T ss_pred HHHHHHHcCCEEEeCcEecH----------------------HHhhcCCEEEEccCCCcCCCCCCCCCC--CcEeeHHHH
Confidence 77777888988877764420 113 79999999999999999998764 235666555
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC--cceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhc
Q 035902 162 ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP--VHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFG 239 (381)
Q Consensus 162 ~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~--~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (381)
.......+++++|||+|.+|+|+|..|++.|.+|++....- .+-......... .+....+.. ..
T Consensus 487 l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~-~~~~~~~~~-------------~~ 552 (671)
T 1ps9_A 487 LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAG-GLSPQGMQI-------------PR 552 (671)
T ss_dssp HTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGG-GBCTTCCCC-------------CC
T ss_pred hhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccc-ccccccccc-------------CC
Confidence 44444568999999999999999999999987665321000 000000000000 000000000 00
Q ss_pred CccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEE-cCC--cEeeccEEEEecCCCC
Q 035902 240 NLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEF-ENG--KIEEFEAIIFATGYKS 314 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~-~~g--~~~~~D~vi~a~G~~p 314 (381)
......+. ....... .....+.......+.+++.+|+++.+ +++++++++.+ .+| +++++|.||+|+|++|
T Consensus 553 ~~~~v~l~-~~~~~~l---~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p 628 (671)
T 1ps9_A 553 SPRQIVML-QRKASKP---GQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEP 628 (671)
T ss_dssp CSSEEEEE-CSSCSCT---TTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEE
T ss_pred CCcEEEEE-Eecchhh---ccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccc
Confidence 00000000 0000000 00000111122356677889999988 88998888777 577 5799999999999999
Q ss_pred CcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEecccccc----cCccHHHHHHHHHh
Q 035902 315 TVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL----HGISIDAKNIANDI 372 (381)
Q Consensus 315 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~----~~a~~~a~~~a~~i 372 (381)
++.. +. . +... .++||++|||.... ..|+.||..+|++|
T Consensus 629 ~~~l-~~-~----l~~~-------------g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 629 NRAL-AQ-P----LIDS-------------GKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp CCTT-HH-H----HHTT-------------TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred cHHH-HH-H----HHhc-------------CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 9853 32 1 1111 25899999997653 27999999999886
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=220.07 Aligned_cols=253 Identities=17% Similarity=0.148 Sum_probs=174.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+|||||++|+++|+.|++. .+|+|||+++.+|+.+....+ ..++ + +. ...++...
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~---------~~~g---~------~~--~~~~~~~~ 166 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGI---------KQEG---F------NK--DSRKVVEE 166 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCS---------EETT---T------TE--EHHHHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeecccc---------ccCC---C------CC--CHHHHHHH
Confidence 37999999999999999999999 999999999988886543211 0000 0 11 23444444
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.+ +.++++++++++.+++.+. +.+.+...+. ++...+.||+||+|||+.|..|.++|.+. ++ +++..++.
T Consensus 167 l~~~l-~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~--~~~~~~~~d~lvlAtGa~~~~~~~~g~~~-~g-v~~~~~~~ 239 (493)
T 1y56_A 167 LVGKL-NENTKIYLETSALGVFDKG--EYFLVPVVRG--DKLIEILAKRVVLATGAIDSTMLFENNDM-PG-VFRRDFAL 239 (493)
T ss_dssp HHHTC-CTTEEEETTEEECCCEECS--SSEEEEEEET--TEEEEEEESCEEECCCEEECCCCCTTTTS-TT-EEEHHHHH
T ss_pred HHHHH-hcCCEEEcCCEEEEEEcCC--cEEEEEEecC--CeEEEEECCEEEECCCCCccCCCCCCCCC-CC-EEEcHHHH
Confidence 43333 4577888899998888765 4454444221 12247999999999999999888888763 33 33332211
Q ss_pred ---CC-CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhh
Q 035902 163 ---NG-GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKF 238 (381)
Q Consensus 163 ---~~-~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 238 (381)
.. ....+++++|+|+|.+|+| ..+.+.|.+
T Consensus 240 ~~~~~~~~~~~~~vvViGgG~~gle--~~l~~~GV~-------------------------------------------- 273 (493)
T 1y56_A 240 EVMNVWEVAPGRKVAVTGSKADEVI--QELERWGID-------------------------------------------- 273 (493)
T ss_dssp HHHHTSCBCSCSEEEEESTTHHHHH--HHHHHHTCE--------------------------------------------
T ss_pred HHHHhcccCCCCEEEEECCCHHHHH--HHHHhCCcE--------------------------------------------
Confidence 11 1235789999999999998 333333332
Q ss_pred cCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEEecCC
Q 035902 239 GNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIFATGY 312 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~a~G~ 312 (381)
++.+ +.++..+ .+.+.+|+++++|.||+|+|+
T Consensus 274 ------------------------------------------v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~ 311 (493)
T 1y56_A 274 ------------------------------------------YVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGR 311 (493)
T ss_dssp ------------------------------------------EEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCE
T ss_pred ------------------------------------------EEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCc
Confidence 2222 3333322 356778889999999999999
Q ss_pred CCCcchhccccCCcc---cccCCCCC-CCCCCCCCCCCcEEEEeccccccc--CccHHHHHHHHHhhhcc
Q 035902 313 KSTVRNWLKRADKDF---FDEYGMPK-RNCPNHWKGENGLYCAGFSRTGLH--GISIDAKNIANDINLAL 376 (381)
Q Consensus 313 ~p~~~~~~~~~~~~~---~~~~g~~~-~~~~~~~~~~~~ifa~Gd~~~~~~--~a~~~a~~~a~~i~~~l 376 (381)
+|+.+.+-. .++ +++.|++. +| +.++ +.|+||++|||.+... .|..||+.+|.+|.+.+
T Consensus 312 ~p~~~l~~~---~g~~~~~~~~g~i~~vd-~~~~-s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 312 RPDINPITQ---AGGKLRFRRGYYSPVLD-EYHR-IKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp EECCHHHHH---TTCCEEEETTEEEECCC-TTSE-EETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CcCchHHHh---cCCCccccCCceeeccc-cccC-cCCCEEEEeccCCccCHHHHHHHHHHHHHHHHHHc
Confidence 999864333 443 35688876 66 3444 8899999999987654 88899999999998865
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=135.67 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=112.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPK 250 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (381)
+++|||+|++|+++|..|++.|.+|+++.+.+ ..+++.. .+ .. . +.
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~-~~~~~~~---------~~--------------------~~--~--~~ 48 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGR-SKVKGVS---------RV--------------------PN--Y--PG 48 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CTTTTCS---------CC--------------------CC--S--TT
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-CcccCch---------hh--------------------hc--c--CC
Confidence 68999999999999999999999999999987 3322100 00 00 0 00
Q ss_pred CCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC----eEEEcCCcEeeccEEEEecCCCCCcchhccccCC
Q 035902 251 KGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN----EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADK 325 (381)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~ 325 (381)
.+ .....+.+...+.+.+++.+++++.+ +++++.+ .+.+++| ++++|.||+|+|.+|+.. . . .
T Consensus 49 ~~------~~~~~~~~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~---~-~-~ 116 (180)
T 2ywl_A 49 LL------DEPSGEELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLP---S-L-L 116 (180)
T ss_dssp CT------TCCCHHHHHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHH---H-H-H
T ss_pred Cc------CCCCHHHHHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCcc---c-c-C
Confidence 00 00000122223355566677888877 7777642 3566677 899999999999998642 2 1 3
Q ss_pred cc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 326 DF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 326 ~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
++ ++ +|++.+| +..+++.|+||++|||..... .|..||+.+|++|.+.++.
T Consensus 117 g~~~~-~g~i~vd-~~~~t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 172 (180)
T 2ywl_A 117 GLTRR-GAYIDTD-EGGRTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDLRG 172 (180)
T ss_dssp TCCEE-TTEECCC-TTCBCSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcc-CceEEeC-CCCCcCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHhhh
Confidence 33 56 8888888 567788999999999987653 7899999999999988754
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-17 Score=138.02 Aligned_cols=131 Identities=14% Similarity=0.017 Sum_probs=86.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCccc-ccCCCCCCCCCCCCCCHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFC-ELPHMPFPSRTPTFVPRISF 79 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (381)
|+++||+|||||++|+.+|..|++.|.+|+|||+.....|.|........ ....+. .+.. ...+.+.++
T Consensus 1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~---~~~~~~~~~~d-------~~g~~~~~~ 70 (232)
T 2cul_A 1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPF---PPGSLLERAYD-------PKDERVWAF 70 (232)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCC---CTTCHHHHHCC-------TTCCCHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCcccccc---chhhHHhhhcc-------CCCCCHHHH
Confidence 77899999999999999999999999999999998432222221111000 000000 0000 001156688
Q ss_pred HHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 80 INYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
.+++.+.+++. +++++ +++|+++..++ +..+.|.+.++ ..+++|+||+|+|.++.....+|.
T Consensus 71 ~~~l~~~~~~~~gv~i~-~~~v~~i~~~~-~~v~~v~~~~g-----~~i~a~~VV~A~G~~s~~~~~~G~ 133 (232)
T 2cul_A 71 HARAKYLLEGLRPLHLF-QATATGLLLEG-NRVVGVRTWEG-----PPARGEKVVLAVGSFLGARLFLGG 133 (232)
T ss_dssp HHHHHHHHHTCTTEEEE-ECCEEEEEEET-TEEEEEEETTS-----CCEECSEEEECCTTCSSCEEEETT
T ss_pred HHHHHHHHHcCCCcEEE-EeEEEEEEEeC-CEEEEEEECCC-----CEEECCEEEECCCCChhhceecCC
Confidence 88888888886 88876 67899998765 23345666555 479999999999998654433443
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-16 Score=147.59 Aligned_cols=304 Identities=16% Similarity=0.092 Sum_probs=156.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCC----CC---Cee--ee--------------------
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRA----YD---RMK--LH-------------------- 53 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~----~~---~~~--~~-------------------- 53 (381)
||+|||||++|+++|+.|++.|.+|+|+|+. ..++. |.... .. ... ..
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 7999999999999999999999999999998 44432 21110 00 000 00
Q ss_pred -cCC--cccccCCCCCCC--------CCC-----CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEE
Q 035902 54 -LAK--QFCELPHMPFPS--------RTP-----TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVA 116 (381)
Q Consensus 54 -~~~--~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~ 116 (381)
.+. .++.....++.. ..+ ......++.+.+.+.+++.+++++.++.| ++..++ +.. .+..
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~--~~v~Gv~v 156 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKD--GKVTGFVT 156 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEET--TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeC--CEEEEEEE
Confidence 000 000000111110 001 01234567777777777789999999999 987764 332 2333
Q ss_pred eecCCCceEEEEeCEEEEccCCCCCCCCCC-CCCCCCcceeecC-----CCCCCCCCCC-CeEEEEcCCCCHHHHHHHHh
Q 035902 117 KNTALDAYEEYVARYLVVATGENGLIPEVP-GLGSFEGEYMHSS-----KYENGGKFIG-KNVLVVGCGNSGMEIAYDLS 189 (381)
Q Consensus 117 ~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~-g~~~~~~~~~~~~-----~~~~~~~~~~-~~v~viG~G~~~~e~a~~l~ 189 (381)
.+. ...+.+|.||+|||..+..+... +.....+.-+... ...+...... ...+++|+| +++++..+.
T Consensus 157 ~~~----~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~ 230 (472)
T 2e5v_A 157 EKR----GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLR 230 (472)
T ss_dssp TTT----EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHH
T ss_pred EeC----CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhc
Confidence 211 13477999999999996655432 1111122111000 0111111111 233455666 777777777
Q ss_pred hCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccch
Q 035902 190 SCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVG 269 (381)
Q Consensus 190 ~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (381)
..|..+ +..+.+ ++++..+... +..|.......
T Consensus 231 ~~G~~~-v~~~g~-rf~~~~~~~~-----el~~rd~v~~~---------------------------------------- 263 (472)
T 2e5v_A 231 GEGAQI-INENGE-RFLFNYDKRG-----ELAPRDILSRA---------------------------------------- 263 (472)
T ss_dssp HTTCEE-EETTCC-CGGGGTCTTG-----GGSCHHHHHHH----------------------------------------
T ss_pred CCceEE-ECCCCC-CCCccCCccc-----CcCchhHHHHH----------------------------------------
Confidence 778776 555555 6666544321 11221111111
Q ss_pred hhhhhcCCCeEEccCcceEeCCeEEEcCCcEee-ccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCCCCCCcE
Q 035902 270 AMDKIRKGEIQVFPSITSINRNEVEFENGKIEE-FEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGL 348 (381)
Q Consensus 270 ~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~-~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 348 (381)
+.+.+++++. ++.+.+.+.. +. +.++ .|.++.+.|.+|+ . ++... .......|.+.+| +..+++.|||
T Consensus 264 i~~~~~~~~~-v~ld~~~~~~----~~--~~~~~~~~~~~~~G~dp~-~-~i~v~-p~~~~~~GGI~vd-~~~~t~ipgL 332 (472)
T 2e5v_A 264 IYIEMLKGHK-VFIDLSKIED----FE--RKFPVVAKYLARHGHNYK-V-KIPIF-PAAHFVDGGIRVN-IRGESNIVNL 332 (472)
T ss_dssp HHHHHHHTCC-EEEECTTCTT----HH--HHCHHHHHHHHHTTCCTT-S-CEECE-EEEEEESCEEECC-TTCBCSSBTE
T ss_pred HHHHHHhCCc-EEEeccchHH----HH--HHhHHHHHHHHHhCcCcc-c-ceEee-hhhceeCCCeEEC-CCCccccCCE
Confidence 0111111110 1111000000 00 1122 4667778899998 3 33301 1123346778888 5678899999
Q ss_pred EEEecccc-ccc-------CccHHHHHHHHHhhhcc
Q 035902 349 YCAGFSRT-GLH-------GISIDAKNIANDINLAL 376 (381)
Q Consensus 349 fa~Gd~~~-~~~-------~a~~~a~~~a~~i~~~l 376 (381)
||+|||++ +.. .+..++...++.+...+
T Consensus 333 yAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~ 368 (472)
T 2e5v_A 333 YAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYV 368 (472)
T ss_dssp EECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTT
T ss_pred EecchhcccccCCCCCCCcccHHHHHHHHHHHHHHH
Confidence 99999987 431 45566555555554443
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-16 Score=141.35 Aligned_cols=186 Identities=15% Similarity=0.189 Sum_probs=113.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC---------CCCC---CeeeecCCcc----------
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK---------RAYD---RMKLHLAKQF---------- 58 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~---------~~~~---~~~~~~~~~~---------- 58 (381)
|+++||+|||||++|+++|+.|+++|.+|+|+|+++.+++.|.. +... ......+...
T Consensus 2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (401)
T 2gqf_A 2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW 81 (401)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence 35699999999999999999999999999999999877543321 0000 0000000000
Q ss_pred -----cccCCCCCCC-CCC-CCC--CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCC--CCeEEEEEeecCCCceEEE
Q 035902 59 -----CELPHMPFPS-RTP-TFV--PRISFINYVDNYVSQMGINPRYHRSVESASYDEN--AKAWIIVAKNTALDAYEEY 127 (381)
Q Consensus 59 -----~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~v~~~~~~~~~~~~~ 127 (381)
......++.. ... .++ ...++.+.+.+.+++.+++++++++|+++..+++ .+.|.|.+.+ ..+
T Consensus 82 ~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~------g~i 155 (401)
T 2gqf_A 82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS------TQW 155 (401)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT------EEE
T ss_pred HHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECC------CEE
Confidence 0000000000 000 011 5678888888888889999999999999987510 1446676543 369
Q ss_pred EeCEEEEccCCCCC--------------------CCCCCCCCCCCcceeecCC-C---CCCCCCCCCeEEEEc-------
Q 035902 128 VARYLVVATGENGL--------------------IPEVPGLGSFEGEYMHSSK-Y---ENGGKFIGKNVLVVG------- 176 (381)
Q Consensus 128 ~~d~vIlAtG~~~~--------------------~~~~~g~~~~~~~~~~~~~-~---~~~~~~~~~~v~viG------- 176 (381)
++|+||+|||..+. .|..|++..+ .++..+ + ...... +.++.|+|
T Consensus 156 ~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~---~~~~~~~~~~~l~g~~~-~~~~~i~G~~~~~g~ 231 (401)
T 2gqf_A 156 QCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPF---TYRETDKFLTALSGISL-PVTITALCGKSFYNQ 231 (401)
T ss_dssp EESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCE---ECCGGGGGGGGGTTCEE-EEEEEETTSCEEEEE
T ss_pred ECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeece---ecCCchhhcccCCCeee-eeEEEEcCCceEEeC
Confidence 99999999999963 1223333221 111211 1 112221 34555568
Q ss_pred --------CCCCHHHHHHHHhhCCCeeEE
Q 035902 177 --------CGNSGMEIAYDLSSCGACTSI 197 (381)
Q Consensus 177 --------~G~~~~e~a~~l~~~g~~v~~ 197 (381)
+|+.+++++..+.. +.+|++
T Consensus 232 ~l~t~~g~sG~~~l~~s~~~~~-~~~~~i 259 (401)
T 2gqf_A 232 LLFTHRGISGPAVLQISNYWQP-TESVEI 259 (401)
T ss_dssp EEECSSEEESHHHHHHTTTCCT-TCCEEE
T ss_pred EEEECCCccHHHHHHHHHHHhc-CCEEEE
Confidence 89999999998876 666654
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=110.53 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=86.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
+||+|||||++|+.+|..|++.|.+|+|+|+.+..-. .. .....++. ++......++.+++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~---~~----------~~~~~~~~------~~~~~~~~~~~~~l 62 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVK---GV----------SRVPNYPG------LLDEPSGEELLRRL 62 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTT---TC----------SCCCCSTT------CTTCCCHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccc---Cc----------hhhhccCC------CcCCCCHHHHHHHH
Confidence 7999999999999999999999999999999862211 00 00001111 11224567899999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLG 149 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~ 149 (381)
.+.+++.+++++++ +|.+++.++ +.+.+++.++ ++.+|.||+|+|..|..+...|++
T Consensus 63 ~~~~~~~gv~v~~~-~v~~i~~~~--~~~~v~~~~g------~i~ad~vI~A~G~~~~~~~~~g~~ 119 (180)
T 2ywl_A 63 EAHARRYGAEVRPG-VVKGVRDMG--GVFEVETEEG------VEKAERLLLCTHKDPTLPSLLGLT 119 (180)
T ss_dssp HHHHHHTTCEEEEC-CCCEEEECS--SSEEEECSSC------EEEEEEEEECCTTCCHHHHHHTCC
T ss_pred HHHHHHcCCEEEeC-EEEEEEEcC--CEEEEEECCC------EEEECEEEECCCCCCCccccCCCC
Confidence 99999999999999 999998765 4466766542 689999999999998554333443
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=130.61 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=104.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCCe-----e--eecCCcc---------cccCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDRM-----K--LHLAKQF---------CELPHMP 65 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~-----~--~~~~~~~---------~~~~~~~ 65 (381)
++||+|||||+||++||+.|++.|.+|+|||++. .+|........... . ....... ..+....
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~ 107 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILN 107 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhh
Confidence 5899999999999999999999999999999874 23321110000000 0 0000000 0000000
Q ss_pred CCCC---C--CCCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 66 FPSR---T--PTFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 66 ~~~~---~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.... . .....+..+...+.+.+++ .++++ ++++|.++..++ +..+.|.+.++ ..+.||.||+|||.+
T Consensus 108 ~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~-g~V~GV~t~dG-----~~I~Ad~VVLATGt~ 180 (651)
T 3ces_A 108 ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVEN-DRVVGAVTQMG-----LKFRAKAVVLTVGTF 180 (651)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESS-SBEEEEEETTS-----EEEEEEEEEECCSTT
T ss_pred cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecC-CEEEEEEECCC-----CEEECCEEEEcCCCC
Confidence 0000 0 0123456777888888877 58887 678899987754 23445666655 689999999999999
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEe
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r 200 (381)
+..+.++|...+ .+.+ +| |.++++++..|.+.|.+|+.+..
T Consensus 181 s~~~~i~G~~~~----------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 181 LDGKIHIGLDNY----------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp TCCEEECC---------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred ccCccccCcccC----------------CCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 887777775532 1223 56 78899999999999999988853
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-13 Score=122.18 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=88.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC------CC----------------CCCeeeecCCcc
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK------RA----------------YDRMKLHLAKQF 58 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~------~~----------------~~~~~~~~~~~~ 58 (381)
|++|||+||||||+|+++|+.|+++|++|+|||+.+.++..... .. ...+....+...
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEK 81 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCc
Confidence 88899999999999999999999999999999998765431110 00 000111111000
Q ss_pred c--ccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEc
Q 035902 59 C--ELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 59 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlA 135 (381)
. ................+..+...+.+.+.+.|++++++++++++..++ +... +.... .++..++++|+||.|
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~~~v~~~~--~~~~~~~~a~~vIgA 157 (397)
T 3oz2_A 82 RPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRH--NNEIVDVRAKMVIAA 157 (397)
T ss_dssp SCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEE--TTEEEEEEEEEEEEC
T ss_pred eEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeecc--ceeeeeeecc--cccceEEEEeEEEeC
Confidence 0 000000000001134678888999998988999999999999988775 3322 22222 123467999999999
Q ss_pred cCCCCCC
Q 035902 136 TGENGLI 142 (381)
Q Consensus 136 tG~~~~~ 142 (381)
+|..+.+
T Consensus 158 dG~~S~v 164 (397)
T 3oz2_A 158 DGFESEF 164 (397)
T ss_dssp CCTTCHH
T ss_pred CccccHH
Confidence 9998543
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=120.43 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=87.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC------------CCCCeeeecCCcc------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR------------AYDRMKLHLAKQF------------ 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~------------~~~~~~~~~~~~~------------ 58 (381)
++||+|||||++|+++|+.|+++|.+|+|+|+.+.+++.+... ....+....+...
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 5899999999999999999999999999999998776533110 0000000000000
Q ss_pred ---cccCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC
Q 035902 59 ---CELPHMPFP-----SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR 130 (381)
Q Consensus 59 ---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d 130 (381)
+.....++. ..++ .....++.+.+.+.+++.+++++++++|+++..++ +.|.|.+.++ .++||
T Consensus 107 ~~~~~~~Gi~~~~~~~g~~~~-~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~g------~i~ad 177 (417)
T 3v76_A 107 VALVERHGIGWHEKTLGQLFC-DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA--SGFRVTTSAG------TVDAA 177 (417)
T ss_dssp HHHHHHTTCCEEECSTTEEEE-SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TEEEEEETTE------EEEES
T ss_pred HHHHHHcCCCcEEeeCCEEee-CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CEEEEEECCc------EEEee
Confidence 000000000 0001 13456888889888988999999999999998876 5677776552 79999
Q ss_pred EEEEccCCCC
Q 035902 131 YLVVATGENG 140 (381)
Q Consensus 131 ~vIlAtG~~~ 140 (381)
+||+|+|..+
T Consensus 178 ~VIlAtG~~S 187 (417)
T 3v76_A 178 SLVVASGGKS 187 (417)
T ss_dssp EEEECCCCSS
T ss_pred EEEECCCCcc
Confidence 9999999985
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=108.73 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=87.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCC-CcCCC-CCCCeeeecC-CcccccCCCCCCCC--CCCCCCH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSAS-LWKKR-AYDRMKLHLA-KQFCELPHMPFPSR--TPTFVPR 76 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~-~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ 76 (381)
++||+|||||++|+++|+.|++. |.+|+|||+...+++ .|... .+..+..... ..++.....++... +......
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 118 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 118 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence 47999999999999999999997 999999999987765 44322 1222211100 00000001111100 0001145
Q ss_pred HHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEee---------cCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 77 ISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKN---------TALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 77 ~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---------~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.++...+.+.+.+ .+++++++++|.++..++ .....+.+.. +..++...++||.||+|+|..+....
T Consensus 119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~ 195 (284)
T 1rp0_A 119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGA 195 (284)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTT
T ss_pred HHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC-CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHH
Confidence 5666666666654 689999999999998765 2222344432 11123467999999999998866543
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-12 Score=117.43 Aligned_cols=138 Identities=20% Similarity=0.280 Sum_probs=88.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC----CCCcCCCCC--------------------CCeeeecCCcc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS----ASLWKKRAY--------------------DRMKLHLAKQF 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~----g~~~~~~~~--------------------~~~~~~~~~~~ 58 (381)
++||+|||||++|+++|+.|+++|.+|+|+|+.... |........ ...........
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 84 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEI 84 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCee
Confidence 489999999999999999999999999999998632 221111000 00000000000
Q ss_pred c--ccCCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEc
Q 035902 59 C--ELPHMPF-PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 59 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
. .+..... .........+..+...+.+.+++.|++++++++|+++..++ +.+.+.+... .++..++++|.||+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~~~v~v~~~-~g~~~~~~a~~vV~A 161 (421)
T 3nix_A 85 ADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFG--TDSVTTIEDI-NGNKREIEARFIIDA 161 (421)
T ss_dssp EEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEET-TSCEEEEEEEEEEEC
T ss_pred EEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcC-CCCEEEEEcCEEEEC
Confidence 0 0110000 01111245678899999998888899999999999998876 4444444321 123347999999999
Q ss_pred cCCCCCCC
Q 035902 136 TGENGLIP 143 (381)
Q Consensus 136 tG~~~~~~ 143 (381)
+|..+..+
T Consensus 162 ~G~~s~l~ 169 (421)
T 3nix_A 162 SGYGRVIP 169 (421)
T ss_dssp CGGGCHHH
T ss_pred CCCchhhH
Confidence 99885443
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=122.86 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=109.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCCe---ee----e-cCCcc--------cccCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDRM---KL----H-LAKQF--------CELPHMP 65 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~---~~----~-~~~~~--------~~~~~~~ 65 (381)
++||+|||||+||++||+.+++.|.+|+|||++. .+|........... .. . ....+ ..+....
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~ 106 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN 106 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence 4899999999999999999999999999999974 33321100000000 00 0 00000 0000000
Q ss_pred CCCC-----CCCCCCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 66 FPSR-----TPTFVPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 66 ~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
.... ......+..+.+.+.+.+++ .++++ ++++|+++..++ +..+.|.+.++ ..+.||.||+|||.+
T Consensus 107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~-g~V~GV~t~dG-----~~i~AdaVVLATG~~ 179 (637)
T 2zxi_A 107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKN-NQVVGVRTNLG-----VEYKTKAVVVTTGTF 179 (637)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESS-SBEEEEEETTS-----CEEECSEEEECCTTC
T ss_pred cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecC-CEEEEEEECCC-----cEEEeCEEEEccCCC
Confidence 0000 00122456788888888887 48887 678899987754 23345666665 579999999999999
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
+..+.++|...+. +.+ + |+.++++++..|.++|.++..+.+.
T Consensus 180 s~~~~~~G~~~~~----------------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~tg 221 (637)
T 2zxi_A 180 LNGVIYIGDKMIP----------------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKTG 221 (637)
T ss_dssp BTCEEEETTEEEE----------------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEEE
T ss_pred ccCceeccceecC----------------CCC---C-CchhHHHHHHHHHhcCCceEEecCC
Confidence 8777666654321 122 2 3567899999999999998777654
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-12 Score=113.63 Aligned_cols=129 Identities=16% Similarity=0.256 Sum_probs=82.7
Q ss_pred ccEEEECCCHHHHHHHHHHHh---CCCCeEEEecCCCCCCCcCCCC---CCCeeeecCCcccccCC--------------
Q 035902 4 VPVVIVGAGPAGLATSACLNN---LSVPNIILEREDCSASLWKKRA---YDRMKLHLAKQFCELPH-------------- 63 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~---~g~~v~lie~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~-------------- 63 (381)
+||+|||||++|+++|+.|++ .|.+|+|||++...||.+.... ......+....++....
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~ 81 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL 81 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence 689999999999999999999 8999999999988887544321 11111111111110000
Q ss_pred ---C--CCC---------CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 64 ---M--PFP---------SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 64 ---~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
. ++. .....+.....+..+.+.++++.+.++++++.|+++..++ +.|.|.+.++ ..+.+
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~--~~~~v~~~~g-----~~~~a 154 (342)
T 3qj4_A 82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRD--DKWEVSKQTG-----SPEQF 154 (342)
T ss_dssp HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECS--SSEEEEESSS-----CCEEE
T ss_pred hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcC--CEEEEEECCC-----CEEEc
Confidence 0 000 0000111112233444455555688999999999999865 5688888776 45799
Q ss_pred CEEEEccCCC
Q 035902 130 RYLVVATGEN 139 (381)
Q Consensus 130 d~vIlAtG~~ 139 (381)
|.||+|+...
T Consensus 155 d~vV~A~p~~ 164 (342)
T 3qj4_A 155 DLIVLTMPVP 164 (342)
T ss_dssp SEEEECSCHH
T ss_pred CEEEECCCHH
Confidence 9999999854
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.1e-12 Score=114.26 Aligned_cols=131 Identities=13% Similarity=0.105 Sum_probs=86.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC------------------------CCCCCeeeecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK------------------------RAYDRMKLHLAK 56 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~------------------------~~~~~~~~~~~~ 56 (381)
|+.+||+|||||++|+++|..|++.|.+|+|||+....+..-.. .....+......
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g 88 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 88 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCC
Confidence 44589999999999999999999999999999998765421000 000000000000
Q ss_pred cccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEcc
Q 035902 57 QFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVAT 136 (381)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAt 136 (381)
.. ...++.+........+..+.+.+.+.+.+.+++++++++|+++.. + + .|++.++ .++++|+||+|+
T Consensus 89 ~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~--~--~v~~~~g-----~~~~ad~vV~Ad 156 (379)
T 3alj_A 89 KS--VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V--G--RLTLQTG-----EVLEADLIVGAD 156 (379)
T ss_dssp EE--EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T--T--EEEETTS-----CEEECSEEEECC
T ss_pred ce--eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C--C--EEEECCC-----CEEEcCEEEECC
Confidence 00 000000000012345788899999888888999999999999976 3 3 5777765 579999999999
Q ss_pred CCCCCCC
Q 035902 137 GENGLIP 143 (381)
Q Consensus 137 G~~~~~~ 143 (381)
|..+...
T Consensus 157 G~~s~vr 163 (379)
T 3alj_A 157 GVGSKVR 163 (379)
T ss_dssp CTTCHHH
T ss_pred CccHHHH
Confidence 9986544
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-12 Score=121.01 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=90.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCee-eecCCccc-ccCCCCCCCCCCCCCCHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMK-LHLAKQFC-ELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (381)
.+||+|||||++|+++|..|++.|.+|+|||+.+.+++.......+... .-...... ....+.. ..-...+..++.
T Consensus 92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~l~ 169 (497)
T 2bry_A 92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCT--GTLDHISIRQLQ 169 (497)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTC--TTCCEEEHHHHH
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccc--cccccCCHHHHH
Confidence 4799999999999999999999999999999988765421110000000 00000000 0000100 001123457888
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeC-CCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDE-NAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPG 147 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g 147 (381)
+.+.+.+++.+++++++++|.++..++ +...+.|.+.+...++...+++|+||+|+|..+....+.+
T Consensus 170 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~ 237 (497)
T 2bry_A 170 LLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTI 237 (497)
T ss_dssp HHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEE
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccc
Confidence 888888888899999999999998642 1245667764210111235899999999999977655433
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-11 Score=115.23 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=89.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC-----cCC--------CCCC-----------CeeeecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL-----WKK--------RAYD-----------RMKLHLAK 56 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~-----~~~--------~~~~-----------~~~~~~~~ 56 (381)
|+++||+|||||++|+++|+.|++.|.+|+|||+....... +.. .... ........
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 100 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQ 100 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecC
Confidence 56799999999999999999999999999999998533211 000 0000 00000000
Q ss_pred c----ccccCCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 57 Q----FCELPHM---PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 57 ~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
. .+.+... ++.........+..+...+.+.+++.|++++++++|+++..++ ...+.|.+.++ ++...+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~-g~~~~V~~~~~--G~~~~i~A 177 (591)
T 3i3l_A 101 DQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSD-PDRVVLTVRRG--GESVTVES 177 (591)
T ss_dssp SCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCS-TTCEEEEEEET--TEEEEEEE
T ss_pred CCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCEEEEEEecC--CceEEEEc
Confidence 0 0000000 0000111235678899999998988999999999999998763 35567877642 23357999
Q ss_pred CEEEEccCCCCC
Q 035902 130 RYLVVATGENGL 141 (381)
Q Consensus 130 d~vIlAtG~~~~ 141 (381)
|.||.|+|....
T Consensus 178 dlVV~AdG~~S~ 189 (591)
T 3i3l_A 178 DFVIDAGGSGGP 189 (591)
T ss_dssp SEEEECCGGGCH
T ss_pred CEEEECCCCcch
Confidence 999999998853
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-11 Score=114.88 Aligned_cols=134 Identities=20% Similarity=0.192 Sum_probs=86.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCC--------------CCe---eeecCCc-c------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAY--------------DRM---KLHLAKQ-F------ 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~--------------~~~---~~~~~~~-~------ 58 (381)
++||+|||||++|+++|+.|++.|++|+|||+............. ..+ ....... +
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 128 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQ 128 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcccc
Confidence 479999999999999999999999999999998654321110000 000 0000000 0
Q ss_pred -cccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 59 -CELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
+.+..............+..+.+.+.+.+++.+++++++++|+++..++ +.+.|++.+.. +.+.+++|+||.|+|
T Consensus 129 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~--~~v~v~~~~~~--G~~~~~a~~vV~ADG 204 (570)
T 3fmw_A 129 GLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDA--EAVEVTVAGPS--GPYPVRARYGVGCDG 204 (570)
T ss_dssp CCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCS--SCEEEEEEETT--EEEEEEESEEEECSC
T ss_pred cccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CeEEEEEEeCC--CcEEEEeCEEEEcCC
Confidence 0000011111112246788899999998888899999999999998765 55667764311 125799999999999
Q ss_pred CCC
Q 035902 138 ENG 140 (381)
Q Consensus 138 ~~~ 140 (381)
.+.
T Consensus 205 ~~S 207 (570)
T 3fmw_A 205 GRS 207 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 884
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-12 Score=120.99 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=105.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCCee-------ee-cCC--------cccccCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDRMK-------LH-LAK--------QFCELPHMP 65 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~~-------~~-~~~--------~~~~~~~~~ 65 (381)
++||+|||||+||++||+.|++.|.+|+|+|+.. .+|+.+......... .. ... ....+....
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~ 100 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN 100 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence 5899999999999999999999999999999974 344322111000000 00 000 000000000
Q ss_pred ---CCCCC--CCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCC
Q 035902 66 ---FPSRT--PTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 66 ---~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
.+... .....+..+...+.+.+++. ++++ ++.+|.++..++ +... |.+.++ ..+.||.||+|||.
T Consensus 101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I-~~~~V~~L~~d~--g~V~GV~t~~G-----~~i~Ad~VVLATG~ 172 (641)
T 3cp8_A 101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDL-LQDTVIGVSANS--GKFSSVTVRSG-----RAIQAKAAILACGT 172 (641)
T ss_dssp SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEEET--TEEEEEEETTS-----CEEEEEEEEECCTT
T ss_pred cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEE-EeeEEEEEEecC--CEEEEEEECCC-----cEEEeCEEEECcCC
Confidence 00000 01234567788888888774 8887 566888887765 4333 666555 57999999999999
Q ss_pred CCCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 139 NGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
++..+.+.|...+ . ..++ + |+.++++++..|.+.|.+|..+...
T Consensus 173 ~s~~~i~~G~~~~-----~-----------~g~~--v-G~~~a~~la~~L~~~G~kv~~l~tG 216 (641)
T 3cp8_A 173 FLNGLIHIGMDHF-----P-----------GGRS--T-AEPPVEGLTESLASLGFSFGRLKTG 216 (641)
T ss_dssp CBTCEEEETTEEE-----E-----------CSSS--T-TSCCBCSHHHHHHHTTCCEEEEEEE
T ss_pred CCCccceeeeeee-----c-----------cccc--c-CCchhhhhHHHHHhCCceEEeecCC
Confidence 9765443343221 0 0111 1 3677889999999999998776543
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-11 Score=113.38 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=91.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC------------------------CCCCe------ee
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR------------------------AYDRM------KL 52 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~------------------------~~~~~------~~ 52 (381)
++||+|||||++|+++|+.|+++|.+|+|||+.+..+...... ....+ ..
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 84 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLA 84 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEE
T ss_pred cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEE
Confidence 4899999999999999999999999999999987543211100 00000 00
Q ss_pred ec--CCccc----ccC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCC----eEEEEEe
Q 035902 53 HL--AKQFC----ELP-----HMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAK----AWIIVAK 117 (381)
Q Consensus 53 ~~--~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~----~~~v~~~ 117 (381)
.. ...+. .+. ............++..+...+.+.+++.+++++++++|+++..++ + .+++++.
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~~~~~v~v~~~ 162 (535)
T 3ihg_A 85 ESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHD--DDAGAGVTARLA 162 (535)
T ss_dssp SSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEEC--GGGCSEEEEEEE
T ss_pred eccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC--CCccccEEEEEE
Confidence 00 00000 000 000000112245788899999999988899999999999998876 4 6777777
Q ss_pred ecCCCceEEEEeCEEEEccCCCCCC
Q 035902 118 NTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 118 ~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
++.. ..++++|+||.|+|.+..+
T Consensus 163 ~~~~--~~~i~a~~vV~AdG~~S~v 185 (535)
T 3ihg_A 163 GPDG--EYDLRAGYLVGADGNRSLV 185 (535)
T ss_dssp ETTE--EEEEEEEEEEECCCTTCHH
T ss_pred cCCC--eEEEEeCEEEECCCCcchH
Confidence 6422 4679999999999998543
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=116.09 Aligned_cols=132 Identities=16% Similarity=0.273 Sum_probs=86.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-----CCCC------Ceeeec--CCcc-----------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-----RAYD------RMKLHL--AKQF----------- 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-----~~~~------~~~~~~--~~~~----------- 58 (381)
++||+|||||++|+++|+.|++.|.+|+|+|+.+.+++.... ..+. .+.... ...+
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE 105 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence 389999999999999999999999999999998766542110 0000 000000 0000
Q ss_pred -----cccCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEE
Q 035902 59 -----CELPHMPFP-----SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYV 128 (381)
Q Consensus 59 -----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 128 (381)
+.....++. ..++.......+.+.+.+.+++.+++++++++|+++..++ ++.+.|.+.++ ..++
T Consensus 106 ~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~-~~v~~V~~~~G-----~~i~ 179 (447)
T 2i0z_A 106 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVILQTG-----EVLE 179 (447)
T ss_dssp HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTC-----CEEE
T ss_pred HHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC-CcEEEEEECCC-----CEEE
Confidence 000000000 0001111356788888888888899999999999998765 23377877665 4699
Q ss_pred eCEEEEccCCCC
Q 035902 129 ARYLVVATGENG 140 (381)
Q Consensus 129 ~d~vIlAtG~~~ 140 (381)
+|.||+|+|..+
T Consensus 180 Ad~VVlAtGg~s 191 (447)
T 2i0z_A 180 TNHVVIAVGGKS 191 (447)
T ss_dssp CSCEEECCCCSS
T ss_pred CCEEEECCCCCc
Confidence 999999999986
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=114.19 Aligned_cols=134 Identities=15% Similarity=0.267 Sum_probs=86.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC------cCC------------------CCCCCeeeecCC-
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL------WKK------------------RAYDRMKLHLAK- 56 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~------~~~------------------~~~~~~~~~~~~- 56 (381)
+++||+|||||++|+++|+.|+++|.+|+|||+.+..... +.. .....+......
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence 3589999999999999999999999999999998754210 000 001111111100
Q ss_pred --cccccCCCCCC---CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCE
Q 035902 57 --QFCELPHMPFP---SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARY 131 (381)
Q Consensus 57 --~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 131 (381)
....++..... ........+..+.+.+.+.+.+ ++++++++|+++..++ +.+.+++.++ +.+++|.
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~a~~ 172 (407)
T 3rp8_A 102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDA--DGVTVWFTDG-----SSASGDL 172 (407)
T ss_dssp CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEET--TEEEEEETTS-----CEEEESE
T ss_pred CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecC--CcEEEEEcCC-----CEEeeCE
Confidence 00000000000 0111234567788888877766 6889999999999876 5677888776 5899999
Q ss_pred EEEccCCCCCCCC
Q 035902 132 LVVATGENGLIPE 144 (381)
Q Consensus 132 vIlAtG~~~~~~~ 144 (381)
||.|+|.+..+..
T Consensus 173 vV~AdG~~S~vr~ 185 (407)
T 3rp8_A 173 LIAADGSHSALRP 185 (407)
T ss_dssp EEECCCTTCSSHH
T ss_pred EEECCCcChHHHH
Confidence 9999999865543
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=115.78 Aligned_cols=135 Identities=20% Similarity=0.239 Sum_probs=89.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------CCCCCeeeecCCc---c----ccc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--------------RAYDRMKLHLAKQ---F----CEL 61 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--------------~~~~~~~~~~~~~---~----~~~ 61 (381)
++||+||||||+|+++|..|++.|++|+|||+.......... ...+.+....... + ..+
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 90 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDF 90 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceeccc
Confidence 589999999999999999999999999999998654321100 0000000000000 0 000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 62 PHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.....+.......++..+.+.+.+.+++.+++++++++|+++..++ +.+++++.++. + .+++++|+||.|+|.+..
T Consensus 91 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~-g-~~~~~a~~vVgADG~~S~ 166 (500)
T 2qa1_A 91 GVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDG--AGVTVEVRGPE-G-KHTLRAAYLVGCDGGRSS 166 (500)
T ss_dssp GGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEET--TEEEEEEEETT-E-EEEEEESEEEECCCTTCH
T ss_pred ccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcC--CeEEEEEEcCC-C-CEEEEeCEEEECCCcchH
Confidence 0000000001234567888999998988899999999999998876 56677777652 1 357999999999999843
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=114.21 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=89.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------CCCCCeee--ecC-Ccc----ccc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--------------RAYDRMKL--HLA-KQF----CEL 61 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--------------~~~~~~~~--~~~-~~~----~~~ 61 (381)
++||+||||||+|+++|..|++.|++|+|||+.......... .....+.. ... ..+ ..+
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 91 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF 91 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence 489999999999999999999999999999998654321110 00000000 000 000 000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 62 PHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.....+.......++..+.+.|.+.+.+.+++++++++|+++..++ +.+++++.++. + .+++++|+||.|+|.+..
T Consensus 92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~-g-~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEG--DHVVVEVEGPD-G-PRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECS--SCEEEEEECSS-C-EEEEEEEEEEECCCTTCH
T ss_pred ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCC-C-cEEEEeCEEEEccCcccH
Confidence 0000000001234577888999998888899999999999998876 45667777652 2 357999999999999843
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=110.28 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=84.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-----CCcCCCCCCCee------e-------ecCC--ccccc
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-----SLWKKRAYDRMK------L-------HLAK--QFCEL 61 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-----~~~~~~~~~~~~------~-------~~~~--~~~~~ 61 (381)
+++||+|||||++|+++|+.|++.|.+|+|||+.+..+ +.+.......+. . ..+. .++..
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 104 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE 104 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence 45899999999999999999999999999999986432 222110000000 0 0000 00000
Q ss_pred C-----CC--CCC-CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEE
Q 035902 62 P-----HM--PFP-SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLV 133 (381)
Q Consensus 62 ~-----~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vI 133 (381)
. .. +.. ........+..+.+.+.+.+. +..++++++|+++..++ +.+.|++.++ ..+++|+||
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad~vV 175 (398)
T 2xdo_A 105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLE--NDTVIWDRKLVMLEPGK--KKWTLTFENK-----PSETADLVI 175 (398)
T ss_dssp SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC--TTSEEESCCEEEEEECS--SSEEEEETTS-----CCEEESEEE
T ss_pred CCCchhhccccccCCCCCceECHHHHHHHHHhhcC--CCEEEECCEEEEEEECC--CEEEEEECCC-----cEEecCEEE
Confidence 0 00 000 000113456677777766554 35788999999998865 5577887766 468999999
Q ss_pred EccCCCCCCCCC
Q 035902 134 VATGENGLIPEV 145 (381)
Q Consensus 134 lAtG~~~~~~~~ 145 (381)
.|+|..+.....
T Consensus 176 ~AdG~~S~vR~~ 187 (398)
T 2xdo_A 176 LANGGMSKVRKF 187 (398)
T ss_dssp ECSCTTCSCCTT
T ss_pred ECCCcchhHHhh
Confidence 999999665543
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-11 Score=114.18 Aligned_cols=131 Identities=19% Similarity=0.324 Sum_probs=84.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-------CCcCCCCCC------------------CeeeecCC--
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-------SLWKKRAYD------------------RMKLHLAK-- 56 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-------~~~~~~~~~------------------~~~~~~~~-- 56 (381)
+||+|||||++|+++|+.|++.|++|+|||+...++ +.|...... .+......
T Consensus 108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~~ 187 (549)
T 3nlc_A 108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN 187 (549)
T ss_dssp CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecccc
Confidence 799999999999999999999999999999986541 112110000 00000000
Q ss_pred c-------ccccCCCCCCCCCCC--CC---CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCce
Q 035902 57 Q-------FCELPHMPFPSRTPT--FV---PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAY 124 (381)
Q Consensus 57 ~-------~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 124 (381)
. .+.....+....... +. ....+.+.+.+.+++.|++++++++|+++..++ ++.+.|.+.++
T Consensus 188 ~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~-~~v~gV~l~~G----- 261 (549)
T 3nlc_A 188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED-GQITGVTLSNG----- 261 (549)
T ss_dssp CHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESS-SBEEEEEETTS-----
T ss_pred ccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC-CEEEEEEECCC-----
Confidence 0 000000000000000 11 135677788888888899999999999998765 23455777766
Q ss_pred EEEEeCEEEEccCCCC
Q 035902 125 EEYVARYLVVATGENG 140 (381)
Q Consensus 125 ~~~~~d~vIlAtG~~~ 140 (381)
+.+.+|.||+|+|.++
T Consensus 262 ~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 262 EEIKSRHVVLAVGHSA 277 (549)
T ss_dssp CEEECSCEEECCCTTC
T ss_pred CEEECCEEEECCCCCh
Confidence 5799999999999986
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5e-11 Score=111.98 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=88.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC--CCCcCCCC-----CCCeee---------ecCCccccc-CC--
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS--ASLWKKRA-----YDRMKL---------HLAKQFCEL-PH-- 63 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~--g~~~~~~~-----~~~~~~---------~~~~~~~~~-~~-- 63 (381)
++||+|||||++|+++|+.|++.|.+|+|+|+.+.. +..+.... +..+.. ........+ +.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQ 85 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCc
Confidence 489999999999999999999999999999998653 22211100 000000 000000000 00
Q ss_pred --CCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 64 --MPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 64 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
..++ .......+..+.+.+.+.+.+.|++++++++|+++..++ +... |++.+...++...++||.||+|+|..+
T Consensus 86 ~~~~~~-~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 86 TVWTVN-GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED--GYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp CEEEEE-EEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred eEEeEC-CCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 0000 001134677888888888888899999999999998765 4432 555431112335799999999999986
Q ss_pred CCCCC
Q 035902 141 LIPEV 145 (381)
Q Consensus 141 ~~~~~ 145 (381)
.....
T Consensus 163 ~vr~~ 167 (453)
T 3atr_A 163 SFRSK 167 (453)
T ss_dssp TTGGG
T ss_pred hhHHh
Confidence 65543
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-10 Score=110.98 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=88.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhC------CCCeEEEecCCCCCCCcCCCC--------------------CCC------e
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL------SVPNIILEREDCSASLWKKRA--------------------YDR------M 50 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~------g~~v~lie~~~~~g~~~~~~~--------------------~~~------~ 50 (381)
++||+|||||++|+++|+.|++. |.+|+|||+...+++...... ... +
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~ 114 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 114 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence 38999999999999999999999 999999999876654211000 000 0
Q ss_pred eeecCCcccccCCCC---CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeec---CCCce
Q 035902 51 KLHLAKQFCELPHMP---FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNT---ALDAY 124 (381)
Q Consensus 51 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~---~~~~~ 124 (381)
..........++..+ ..........+.++.+.|.+.+++.|++++++++|.++..+++.....|.+.+. ..++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~ 194 (584)
T 2gmh_A 115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAP 194 (584)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCE
T ss_pred eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCc
Confidence 000000001111001 000001134677899999999988899999999999998765323333555420 01111
Q ss_pred -------EEEEeCEEEEccCCCCC
Q 035902 125 -------EEYVARYLVVATGENGL 141 (381)
Q Consensus 125 -------~~~~~d~vIlAtG~~~~ 141 (381)
.++++|+||+|+|.+..
T Consensus 195 ~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 195 KTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EEEEECCCEEECSEEEECCCTTCH
T ss_pred ccccCCceEEECCEEEEeeCCCch
Confidence 47999999999999853
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=109.78 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=87.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC----CCCCcCCC----------CCC-----Cee------eecCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC----SASLWKKR----------AYD-----RMK------LHLAKQ 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~----~g~~~~~~----------~~~-----~~~------~~~~~~ 57 (381)
++||+|||||++|+++|+.|++.|++|+|||+... .|..+... ... ... ......
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 86 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE 86 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence 48999999999999999999999999999999862 22211100 000 000 000000
Q ss_pred c----cccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEeecCCCceEEEEeCE
Q 035902 58 F----CELPHMPFP-SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKNTALDAYEEYVARY 131 (381)
Q Consensus 58 ~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~d~ 131 (381)
. ..+...+.. ........+..+.+.+.+.+.+.|++++++++|+++..++ +.. .|.+.+. .++...+++|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~-dG~~~~i~ad~ 163 (512)
T 3e1t_A 87 PEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNT-EGVELMAHARF 163 (512)
T ss_dssp SSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECS-SSCEEEEEEEE
T ss_pred ccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeC-CCCEEEEEcCE
Confidence 0 000000000 0111235678899999999988999999999999998865 332 2444331 12335899999
Q ss_pred EEEccCCCCCCCC
Q 035902 132 LVVATGENGLIPE 144 (381)
Q Consensus 132 vIlAtG~~~~~~~ 144 (381)
||+|+|.+.....
T Consensus 164 VI~AdG~~S~vr~ 176 (512)
T 3e1t_A 164 IVDASGNRTRVSQ 176 (512)
T ss_dssp EEECCCTTCSSGG
T ss_pred EEECCCcchHHHH
Confidence 9999999865544
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=105.84 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=85.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCC--------------C----------CCCeeeecC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKR--------------A----------YDRMKLHLA 55 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~--------------~----------~~~~~~~~~ 55 (381)
|+++||+|||||++|+++|..|++.|.+ |+|||+.+..+...... . ...+.....
T Consensus 2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~ 81 (410)
T 3c96_A 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ 81 (410)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcC
Confidence 4568999999999999999999999999 99999987543211000 0 000000000
Q ss_pred Cc--ccccCCC-CCCCCCC-CCCCHHHHHHHHHHHHHH-hC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEe
Q 035902 56 KQ--FCELPHM-PFPSRTP-TFVPRISFINYVDNYVSQ-MG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVA 129 (381)
Q Consensus 56 ~~--~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 129 (381)
.. ....+.. ......+ ....+..+.+.+.+.+.+ .+ +.++++++|+++.. + +.+.+++.+...++..++++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~--~~v~v~~~~~~~g~~~~~~a 158 (410)
T 3c96_A 82 SGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-R--DGRVLIGARDGHGKPQALGA 158 (410)
T ss_dssp TSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-E--TTEEEEEEEETTSCEEEEEE
T ss_pred CCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-C--CccEEEEecCCCCCceEEec
Confidence 00 0000000 0000111 134567888888887765 46 57999999999987 4 34667776521123357999
Q ss_pred CEEEEccCCCCCC
Q 035902 130 RYLVVATGENGLI 142 (381)
Q Consensus 130 d~vIlAtG~~~~~ 142 (381)
|+||.|+|..+.+
T Consensus 159 d~vV~AdG~~S~v 171 (410)
T 3c96_A 159 DVLVGADGIHSAV 171 (410)
T ss_dssp SEEEECCCTTCHH
T ss_pred CEEEECCCccchh
Confidence 9999999998543
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-11 Score=108.46 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+.+.+.+.+++.|++++++++|+++..++ ++.+.|.+.++ +...+++|.||+|+|.+
T Consensus 148 ~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~g---~~~~~~a~~VV~A~G~~ 208 (369)
T 3dme_A 148 DSHALMLAYQGDAESDGAQLVFHTPLIAGRVRP-EGGFELDFGGA---EPMTLSCRVLINAAGLH 208 (369)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEECT-TSSEEEEECTT---SCEEEEEEEEEECCGGG
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC-CceEEEEECCC---ceeEEEeCEEEECCCcc
Confidence 455778888888888899999999999998865 24477777654 23579999999999998
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-11 Score=111.05 Aligned_cols=140 Identities=17% Similarity=0.211 Sum_probs=86.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC------CC--CcCC--------CC----------CCCeeeecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS------AS--LWKK--------RA----------YDRMKLHLA 55 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~------g~--~~~~--------~~----------~~~~~~~~~ 55 (381)
+++||+|||||++|+++|+.|++.|.+|+|+|+.+.. +. .+.. .. ...+.....
T Consensus 1 m~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 80 (394)
T 1k0i_A 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA 80 (394)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred CCccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEEC
Confidence 1589999999999999999999999999999987631 11 1100 00 000111000
Q ss_pred CcccccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEE-eecCCCceEEEEeCEEE
Q 035902 56 KQFCELPHMPFP-SRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVA-KNTALDAYEEYVARYLV 133 (381)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~-~~~~~~~~~~~~~d~vI 133 (381)
.....+...... ........+.++.+.+.+.+.+.+++++++++|+++..+++ +.+.|++ .++ +..++++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~-~~~~v~~~~~g---~~~~~~a~~vV 156 (394)
T 1k0i_A 81 GQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQG-ERPYVTFERDG---ERLRLDCDYIA 156 (394)
T ss_dssp TEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTS-SSCEEEEEETT---EEEEEECSEEE
T ss_pred CceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecC-CceEEEEecCC---cEEEEEeCEEE
Confidence 000000000000 00111235667778888777777999999999999986532 3455776 444 22379999999
Q ss_pred EccCCCCCCCCC
Q 035902 134 VATGENGLIPEV 145 (381)
Q Consensus 134 lAtG~~~~~~~~ 145 (381)
.|+|..+.....
T Consensus 157 ~AdG~~S~vr~~ 168 (394)
T 1k0i_A 157 GCDGFHGISRQS 168 (394)
T ss_dssp ECCCTTCSTGGG
T ss_pred ECCCCCcHHHHh
Confidence 999999665543
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-10 Score=108.57 Aligned_cols=134 Identities=18% Similarity=0.243 Sum_probs=86.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC----------------------CCCC------eeeec
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR----------------------AYDR------MKLHL 54 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~----------------------~~~~------~~~~~ 54 (381)
++||+||||||+|+++|..|++.|.+|+|||+....+...... .... .....
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 105 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR 105 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence 3799999999999999999999999999999987554221110 0000 00000
Q ss_pred --CCcccccCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCce
Q 035902 55 --AKQFCELPHMPF--------PSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAY 124 (381)
Q Consensus 55 --~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 124 (381)
...+..+..... ........++..+.+.+.+.+++. ++++++|+++..++ +.+++++.+...++.
T Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~--~~v~v~~~~~~~G~~ 180 (549)
T 2r0c_A 106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRD--DHVRATITDLRTGAT 180 (549)
T ss_dssp BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECS--SCEEEEEEETTTCCE
T ss_pred CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeC--CEEEEEEEECCCCCE
Confidence 000101110000 000012345777888888887765 88999999998866 456777776333344
Q ss_pred EEEEeCEEEEccCCCCC
Q 035902 125 EEYVARYLVVATGENGL 141 (381)
Q Consensus 125 ~~~~~d~vIlAtG~~~~ 141 (381)
.++++|+||.|+|.+..
T Consensus 181 ~~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 181 RAVHARYLVACDGASSP 197 (549)
T ss_dssp EEEEEEEEEECCCTTCH
T ss_pred EEEEeCEEEECCCCCcH
Confidence 67999999999999843
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=107.02 Aligned_cols=132 Identities=12% Similarity=0.098 Sum_probs=82.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC-----CcCC-CC---CCCeee-----ecCCc---cccc-CC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS-----LWKK-RA---YDRMKL-----HLAKQ---FCEL-PH 63 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~-----~~~~-~~---~~~~~~-----~~~~~---~~~~-~~ 63 (381)
..+||+|||||++|+++|..|++.|++|+|+|+.+.... .... .. ...+.. ..+.. +... ..
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g 83 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 83 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCC
Confidence 458999999999999999999999999999999865311 0000 00 000000 00000 0000 00
Q ss_pred CCCC-CCC-CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 64 MPFP-SRT-PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 64 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.... ... .....+..+.+.+.+.+ .+++++++++|+++..++ +.+.|++.++ ..+++|+||.|+|..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 84 ERVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDS--ETVQMRFSDG-----TKAEANWVIGADGGASV 154 (397)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECS--SCEEEEETTS-----CEEEESEEEECCCTTCH
T ss_pred CccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CEEEEEECCC-----CEEECCEEEECCCcchh
Confidence 0000 000 01233456666666554 378899999999998865 5577888765 57999999999999854
Q ss_pred C
Q 035902 142 I 142 (381)
Q Consensus 142 ~ 142 (381)
+
T Consensus 155 v 155 (397)
T 2vou_A 155 V 155 (397)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-11 Score=109.10 Aligned_cols=133 Identities=13% Similarity=0.099 Sum_probs=87.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC------cCC--------CC----------CCCeeeecCC--
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL------WKK--------RA----------YDRMKLHLAK-- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~------~~~--------~~----------~~~~~~~~~~-- 56 (381)
++||+|||||++|+++|+.|++.|.+|+|||+....... +.. .. ...+......
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~ 85 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE 85 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence 489999999999999999999999999999998654110 000 00 0000000000
Q ss_pred cccccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeE--EEEEeecCCCceEEEEeCEE
Q 035902 57 QFCELPHMPFP-SRTPTFVPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAW--IIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~--~v~~~~~~~~~~~~~~~d~v 132 (381)
....+...... ..+.....+..+.+.+.+.+++. +++++++++|+++..++ +.+ .|++.++ ..+++|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~g~v~~~~g-----~~~~ad~v 158 (399)
T 2x3n_A 86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDE--RHAIDQVRLNDG-----RVLRPRVV 158 (399)
T ss_dssp EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECT--TSCEEEEEETTS-----CEEEEEEE
T ss_pred EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC--CceEEEEEECCC-----CEEECCEE
Confidence 00000000000 00112356788899998888887 88999999999998865 445 6777665 47999999
Q ss_pred EEccCCCCCC
Q 035902 133 VVATGENGLI 142 (381)
Q Consensus 133 IlAtG~~~~~ 142 (381)
|+|+|.++..
T Consensus 159 V~AdG~~s~v 168 (399)
T 2x3n_A 159 VGADGIASYV 168 (399)
T ss_dssp EECCCTTCHH
T ss_pred EECCCCChHH
Confidence 9999998543
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=107.63 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhCCcccccc---EEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHR---SVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|+++++++ +|+++..++ +.+. |.+.++ ..++||.||+|+|.+
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v~gV~t~~G-----~~i~Ad~VV~AtG~~ 220 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTADG-----KIWRAERTFLCAGAS 220 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEEEEEEETTT-----EEEECSEEEECCGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeEEEEEECCC-----CEEECCEEEECCCCC
Confidence 45778888888888899999999 999998865 5666 777766 689999999999998
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-10 Score=107.38 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=87.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--CCC----CCee-----eecCCc--------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--RAY----DRMK-----LHLAKQ-------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--~~~----~~~~-----~~~~~~-------------- 57 (381)
++||+|||||++|+++|+.|+++|.+|+|||+.+..++.... ..+ ..+. .+....
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 205 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 489999999999999999999999999999999877763211 100 0000 000000
Q ss_pred ----------------ccccCCCCCC-------CCCCC-------CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeC
Q 035902 58 ----------------FCELPHMPFP-------SRTPT-------FVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107 (381)
Q Consensus 58 ----------------~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 107 (381)
++.-...++. ..++. ......+.+.|.+.+++.+++++++++|+++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~ 285 (571)
T 1y0p_A 206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD 285 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence 0000001110 00010 12356788888888888999999999999998754
Q ss_pred CCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+...+.|.+.+. .++...+++|.||+|||.+..
T Consensus 286 ~g~v~Gv~~~~~-~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 286 KGTVKGILVKGM-YKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp TSCEEEEEEEET-TTEEEEEECSEEEECCCCCTT
T ss_pred CCeEEEEEEEeC-CCcEEEEECCeEEEeCCCccc
Confidence 233333555431 123357999999999999743
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-10 Score=106.25 Aligned_cols=63 Identities=22% Similarity=0.192 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+.+.|++++.+++|+++..++ +.|.|.+.+...++...+++|.||+|+|.+
T Consensus 147 ~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~ 209 (501)
T 2qcu_A 147 DDARLVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPW 209 (501)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGG
T ss_pred cHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChh
Confidence 355677777888888899999999999998875 667788765333344579999999999998
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=103.85 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+.+.+.+.+++.|++++.+++|+++..++ +.+.+++.++ .+++|.||+|+|.+
T Consensus 148 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~g------~~~a~~vV~a~G~~ 203 (372)
T 2uzz_A 148 SELAIKTWIQLAKEAGCAQLFNCPVTAIRHDD--DGVTIETADG------EYQAKKAIVCAGTW 203 (372)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSEEEEESSC------EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcC--CEEEEEECCC------eEEcCEEEEcCCcc
Confidence 34677778888888899999999999998865 4466766554 49999999999987
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.9e-10 Score=106.28 Aligned_cols=64 Identities=23% Similarity=0.141 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+...+.+.|+.++.+++|+++..++ ++.+.|.+.+...++...+++|.||+|+|.+
T Consensus 168 d~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~-g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~ 231 (561)
T 3da1_A 168 DDARLTLEIMKEAVARGAVALNYMKVESFIYDQ-GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW 231 (561)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEESEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred cHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence 345666777777888899999999999998875 2345678776544555789999999999998
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-10 Score=110.66 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++.|++++++++|+++..++ +.|.|.+.++ ..+++|.||+|+|.+
T Consensus 415 ~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v~V~t~~G-----~~i~Ad~VVlAtG~~ 472 (676)
T 3ps9_A 415 CPAELTRNVLELAQQQGLQIYYQYQLQNFSRKD--DCWLLNFAGD-----QQATHSVVVLANGHQ 472 (676)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECCGGG
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC--CeEEEEECCC-----CEEECCEEEECCCcc
Confidence 346777788888888899999999999999876 5677777665 469999999999998
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-09 Score=105.82 Aligned_cols=138 Identities=19% Similarity=0.239 Sum_probs=87.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--CCC----CCee----e-ecCC---------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--RAY----DRMK----L-HLAK--------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--~~~----~~~~----~-~~~~--------------- 56 (381)
++||+|||||++|+++|+.|++.|.+|+|||+.+..++.... ... ..+. . +...
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~ 200 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND 200 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 479999999999999999999999999999999877653211 000 0000 0 0000
Q ss_pred ---------------cccccCCCCCC-------CCCC-------CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeC
Q 035902 57 ---------------QFCELPHMPFP-------SRTP-------TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107 (381)
Q Consensus 57 ---------------~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 107 (381)
.++.-...++. ..++ .......+.+.|.+.+++.+++++++++|+++..++
T Consensus 201 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~ 280 (566)
T 1qo8_A 201 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVND 280 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECT
T ss_pred HHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECC
Confidence 00000001110 0001 112366788888888888899999999999998754
Q ss_pred CCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
++....|.+.+. .++...+++|.||+|||....
T Consensus 281 ~g~v~Gv~~~~~-~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 281 DHSVVGAVVHGK-HTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp TSBEEEEEEEET-TTEEEEEEEEEEEECCCCCTT
T ss_pred CCcEEEEEEEeC-CCcEEEEEcCEEEEecCCccc
Confidence 223333555431 123347999999999999854
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.1e-10 Score=107.63 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=88.6
Q ss_pred cccEEEECCCHHHHHHHHHHHh-CCCCeEEEecCCCCCCCcCCC--------------C----------CCCeeeecC--
Q 035902 3 EVPVVIVGAGPAGLATSACLNN-LSVPNIILEREDCSASLWKKR--------------A----------YDRMKLHLA-- 55 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~-~g~~v~lie~~~~~g~~~~~~--------------~----------~~~~~~~~~-- 55 (381)
++||+||||||+|+++|+.|++ .|.+|+|||+.+......... . ...+.....
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 111 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDP 111 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECT
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCC
Confidence 4799999999999999999999 999999999986543221110 0 000000000
Q ss_pred ---Cccc---ccCCCCCC-CCC-CCCCCHHHHHHHHHHHHHHhCC--ccccccEEEEEEEeCC--CCeEEEEEeec---C
Q 035902 56 ---KQFC---ELPHMPFP-SRT-PTFVPRISFINYVDNYVSQMGI--NPRYHRSVESASYDEN--AKAWIIVAKNT---A 120 (381)
Q Consensus 56 ---~~~~---~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~--~~~~~v~~~~~---~ 120 (381)
.... .++..... ... ....++..+.+.|.+.+++.++ +++++++|+++..+++ ...+.+++.+. .
T Consensus 112 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~ 191 (639)
T 2dkh_A 112 GQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAH 191 (639)
T ss_dssp TSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGG
T ss_pred CCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccC
Confidence 0000 00000000 000 1235678899999999988876 8999999999987652 12466776641 1
Q ss_pred CCceEEEEeCEEEEccCCCCC
Q 035902 121 LDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 121 ~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.++.+++++|+||.|+|.+..
T Consensus 192 ~G~~~~i~a~~vVgADG~~S~ 212 (639)
T 2dkh_A 192 AGQIETVQARYVVGCDGARSN 212 (639)
T ss_dssp TTCEEEEEEEEEEECCCTTCH
T ss_pred CCCeEEEEeCEEEECCCcchH
Confidence 223467999999999999843
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=97.10 Aligned_cols=139 Identities=20% Similarity=0.236 Sum_probs=83.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC-CcCCCC-CCCeeeecC-CcccccCCCCCCC--CCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS-LWKKRA-YDRMKLHLA-KQFCELPHMPFPS--RTPTFVP 75 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ 75 (381)
++||+|||||++|+++|+.|+++ |.+|+|||+...+++ .|.... +........ ..++.....++.. .+.....
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~ 158 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH 158 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence 48999999999999999999997 999999999987764 564322 222221110 0011101111110 0111122
Q ss_pred HHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCC---------------C--e-EEEEEe------ecCC---CceEEE
Q 035902 76 RISFINYVDNYVSQ-MGINPRYHRSVESASYDENA---------------K--A-WIIVAK------NTAL---DAYEEY 127 (381)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~---------------~--~-~~v~~~------~~~~---~~~~~~ 127 (381)
..++.+.+.+.+.+ .+++++.++.+.++..+++. + . -.|.+. ++.. .+...+
T Consensus 159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i 238 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI 238 (344)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence 45666666666666 58899999999888765410 1 1 112222 1111 234689
Q ss_pred EeCEEEEccCCCCC
Q 035902 128 VARYLVVATGENGL 141 (381)
Q Consensus 128 ~~d~vIlAtG~~~~ 141 (381)
++++||+|||....
T Consensus 239 ~Ak~VV~ATG~~s~ 252 (344)
T 3jsk_A 239 NAPVIISTTGHDGP 252 (344)
T ss_dssp ECSEEEECCCSSSS
T ss_pred EcCEEEECCCCCch
Confidence 99999999998844
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=107.19 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceE-EEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE-EYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~-~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++.|++++++++|+++..++ +.|.|.+.++ . .+++|.||+|+|.+
T Consensus 410 ~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v~V~t~~G-----~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 410 CPSDLTHALMMLAQQNGMTCHYQHELQRLKRID--SQWQLTFGQS-----QAAKHHATVILATGHR 468 (689)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEESCCEEEEEECS--SSEEEEEC-C-----CCCEEESEEEECCGGG
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC--CeEEEEeCCC-----cEEEECCEEEECCCcc
Confidence 345677778888888899999999999999876 4577877765 4 68999999999998
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=100.01 Aligned_cols=57 Identities=9% Similarity=-0.049 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++.|++++.+++|+++..++ +.+. |.+.+ ..+++|.||+|+|.+
T Consensus 147 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~v~gv~~~~------g~i~a~~VV~A~G~~ 204 (382)
T 1y56_B 147 DPFEATTAFAVKAKEYGAKLLEYTEVKGFLIEN--NEIKGVKTNK------GIIKTGIVVNATNAW 204 (382)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETT------EEEECSEEEECCGGG
T ss_pred CHHHHHHHHHHHHHHCCCEEECCceEEEEEEEC--CEEEEEEECC------cEEECCEEEECcchh
Confidence 456777888888888899999999999998765 5555 65543 269999999999988
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=100.36 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++++++|+++..++ +.+.|.+.+ ..+++|.||+|+|.+
T Consensus 152 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~v~t~~------g~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 152 VRGTLAALFTLAQAAGATLRAGETVTELVPDA--DGVSVTTDR------GTYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEEEEEESS------CEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEcC--CeEEEEECC------CEEEcCEEEEcCCcC
Confidence 34566777777788899999999999998765 456665543 269999999999987
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.1e-10 Score=101.27 Aligned_cols=60 Identities=20% Similarity=0.111 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 73 FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
......+.+.+.+.+++.|++++.+++|+++..++ +.+.|.+.+ ..+++|.||+|+|.+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~~v~~~~------g~~~a~~vV~A~G~~s 219 (382)
T 1ryi_A 160 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EALFIKTPS------GDVWANHVVVASGVWS 219 (382)
T ss_dssp BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSEEEEETT------EEEEEEEEEECCGGGT
T ss_pred EEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC--CEEEEEcCC------ceEEcCEEEECCChhH
Confidence 34567788888888888899999999999998765 455566543 2689999999999873
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-09 Score=98.73 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++.+++|+++..++ +.+.|.+.+ ..+++|.||+|+|.+
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~~~v~~~~------g~~~a~~vV~A~G~~ 204 (389)
T 2gf3_A 149 SENCIRAYRELAEARGAKVLTHTRVEDFDISP--DSVKIETAN------GSYTADKLIVSMGAW 204 (389)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SCEEEEETT------EEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCcc
Confidence 45777888888888899999999999998865 456666543 369999999999987
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=100.11 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++.|++++++++|+++..++ +.+.|.+.+ ..++||.||+|+|.+
T Consensus 152 ~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~~~V~t~~------g~i~a~~VV~A~G~~ 208 (381)
T 3nyc_A 152 DTDALHQGYLRGIRRNQGQVLCNHEALEIRRVD--GAWEVRCDA------GSYRAAVLVNAAGAW 208 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCEEESSCCCCEEEEET--TEEEEECSS------EEEEESEEEECCGGG
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC--CeEEEEeCC------CEEEcCEEEECCChh
Confidence 445677778888888899999999999998876 557777655 379999999999987
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.3e-10 Score=101.82 Aligned_cols=130 Identities=16% Similarity=0.198 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc-------CCC---CCCCe--------------------eee
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW-------KKR---AYDRM--------------------KLH 53 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~-------~~~---~~~~~--------------------~~~ 53 (381)
.+|+||||||+|+++|..|+++|++|+|||+.+...... ... ....+ ...
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 81 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY 81 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence 579999999999999999999999999999976442110 000 00000 000
Q ss_pred c-CCcccccCCC--CCCCCCCC----CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE
Q 035902 54 L-AKQFCELPHM--PFPSRTPT----FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE 126 (381)
Q Consensus 54 ~-~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 126 (381)
. .......... +....... ...+..+.+.+. +..+..++++++++++...+ ++..+|++.+| ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~---~~~~~~v~~~~~v~~~~~~~-~~~v~v~~~dG-----~~ 152 (412)
T 4hb9_A 82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILN---KGLANTIQWNKTFVRYEHIE-NGGIKIFFADG-----SH 152 (412)
T ss_dssp CTTSCEEEC--------------CEEEEEHHHHHHHHH---TTCTTTEECSCCEEEEEECT-TSCEEEEETTS-----CE
T ss_pred cCCcceecccCCccccccccccccceEeeHHHHHHHHH---hhccceEEEEEEEEeeeEcC-CCeEEEEECCC-----CE
Confidence 0 0000000000 00000000 112334444332 23345688999999998765 35567888887 67
Q ss_pred EEeCEEEEccCCCCCC
Q 035902 127 YVARYLVVATGENGLI 142 (381)
Q Consensus 127 ~~~d~vIlAtG~~~~~ 142 (381)
+++|+||.|.|.+..+
T Consensus 153 ~~adlvVgADG~~S~v 168 (412)
T 4hb9_A 153 ENVDVLVGADGSNSKV 168 (412)
T ss_dssp EEESEEEECCCTTCHH
T ss_pred EEeeEEEECCCCCcch
Confidence 9999999999998543
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-10 Score=105.94 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 74 VPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+..+.+.+.+.+++.|++++.+ +|+++..+++...+.|.+.++ ..+++|+||+|+|.+...
T Consensus 162 i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g-----~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 162 FDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEG-----RTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp ECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTS-----CEECCSEEEECCGGGCCC
T ss_pred EeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCC-----cEEEeCEEEECCCCchhh
Confidence 345788888888888889999888 899998754323345666654 479999999999998654
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-09 Score=93.26 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=82.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC-CcCCCC-CCCeeeecC-CcccccCCCCCCCC--CCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS-LWKKRA-YDRMKLHLA-KQFCELPHMPFPSR--TPTFVP 75 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~ 75 (381)
++||+|||||++|+++|+.|++. |.+|+|+|+....|+ .|.... +........ ..+......++... +.....
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~ 144 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH 144 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence 36999999999999999999998 999999999888764 564321 111111110 01111111111111 011113
Q ss_pred HHHHHHHHHHHHHH-hCCccccccEEEEEEEeCC-C-C---eEEEEEee------c---CCCceEEEEe-----------
Q 035902 76 RISFINYVDNYVSQ-MGINPRYHRSVESASYDEN-A-K---AWIIVAKN------T---ALDAYEEYVA----------- 129 (381)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~-~-~---~~~v~~~~------~---~~~~~~~~~~----------- 129 (381)
..++...+.+.+.+ .+++++.+++|.++..+.+ + + ..-|.+.. + ...+...+.+
T Consensus 145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~ 224 (326)
T 2gjc_A 145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL 224 (326)
T ss_dssp HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence 45666777776666 4889999999999977631 1 1 11233321 1 1123467899
Q ss_pred ----CEEEEccCCCCC
Q 035902 130 ----RYLVVATGENGL 141 (381)
Q Consensus 130 ----d~vIlAtG~~~~ 141 (381)
++||.|||....
T Consensus 225 ~~~~~~VV~ATG~~~~ 240 (326)
T 2gjc_A 225 SQKHGVILSTTGHDGP 240 (326)
T ss_dssp STTCCEEEECCCCC--
T ss_pred cccCCEEEECcCCCch
Confidence 999999998743
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.4e-09 Score=101.06 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=87.6
Q ss_pred cccEEEECCCHHHHHHHHHHHh-----CCCCeEEEecCCCCCCCcCC------------------------CCCCCeeee
Q 035902 3 EVPVVIVGAGPAGLATSACLNN-----LSVPNIILEREDCSASLWKK------------------------RAYDRMKLH 53 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~-----~g~~v~lie~~~~~g~~~~~------------------------~~~~~~~~~ 53 (381)
++||+||||||+|+++|..|++ .|++|+|||+.+........ ..+..+...
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~ 87 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY 87 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence 4799999999999999999999 99999999987533211000 001111111
Q ss_pred cCC---ccc---ccCCCC-CCCCCC-CCCCHHHHHHHHHHHHHHhC---CccccccEEEEEEEeC------CCCeEEEEE
Q 035902 54 LAK---QFC---ELPHMP-FPSRTP-TFVPRISFINYVDNYVSQMG---INPRYHRSVESASYDE------NAKAWIIVA 116 (381)
Q Consensus 54 ~~~---~~~---~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~i~~~~------~~~~~~v~~ 116 (381)
... ... .++... ....+. ....+..+.+.|.+.+.+.+ +.++++++++++..++ +....++++
T Consensus 88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~ 167 (665)
T 1pn0_A 88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTL 167 (665)
T ss_dssp EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEE
T ss_pred eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEE
Confidence 000 000 000000 000111 23567888899888888776 8999999999998764 112355665
Q ss_pred eec---------------------------------------CCCceEEEEeCEEEEccCCCCCC
Q 035902 117 KNT---------------------------------------ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 117 ~~~---------------------------------------~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+. ..++.+++++|+||.|.|.+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~V 232 (665)
T 1pn0_A 168 RYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWV 232 (665)
T ss_dssp EECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHH
T ss_pred EecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHH
Confidence 542 12344679999999999998543
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-09 Score=99.94 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeC-EEEEccCCCC
Q 035902 78 SFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVAR-YLVVATGENG 140 (381)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d-~vIlAtG~~~ 140 (381)
.+...+.+.+++.++++++++.|+++..+++.....|.+.++ ++...++++ .||+|||...
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~--g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQY--GKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEET--TEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEEC--CcEEEEEeCCeEEEeCCChh
Confidence 788888888888899999999999998873233333555542 234579995 9999999985
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-09 Score=98.12 Aligned_cols=58 Identities=12% Similarity=-0.001 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++.|++++++++|+++..++ ++.+.|.+.++ .+++|.||+|+|.+
T Consensus 172 ~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~~~~~v~~~~g------~~~a~~vV~a~G~~ 229 (405)
T 2gag_B 172 KHDHVAWAFARKANEMGVDIIQNCEVTGFIKDG-EKVTGVKTTRG------TIHAGKVALAGAGH 229 (405)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEEEEEETTC------CEEEEEEEECCGGG
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeC-CEEEEEEeCCc------eEECCEEEECCchh
Confidence 455778888888888899999999999998764 24455666543 58999999999987
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=97.35 Aligned_cols=138 Identities=18% Similarity=0.162 Sum_probs=86.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--CCC----CCe----ee-ecCCc--------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK--RAY----DRM----KL-HLAKQ-------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~--~~~----~~~----~~-~~~~~-------------- 57 (381)
.+||+|||||++|+++|+.|++.|.+|+|+|+.+..++.... ..+ ... .. +....
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 379999999999999999999999999999999877653211 000 000 00 00000
Q ss_pred ----------------ccccCCCCCC-----C--CCCC-------CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeC
Q 035902 58 ----------------FCELPHMPFP-----S--RTPT-------FVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107 (381)
Q Consensus 58 ----------------~~~~~~~~~~-----~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 107 (381)
++.-...++. . ..+. ......+...|.+.+++.+++++++++|+++..++
T Consensus 206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~ 285 (572)
T 1d4d_A 206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA 285 (572)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence 0000000110 0 0010 12356788888888888899999999999997653
Q ss_pred CCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+...+.|.+.+. .++...+.+|.||+|||..+.
T Consensus 286 ~g~v~GV~~~~~-~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 286 SGKVTGVLVKGE-YTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp -CCEEEEEEEET-TTEEEEEECSEEEECCCCCTT
T ss_pred CCeEEEEEEEeC-CCcEEEEEcCEEEEeCCCCcc
Confidence 123334555431 123457999999999998864
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-09 Score=100.38 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHh-CCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 74 VPRISFINYVDNYVSQM-GINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+..+.+.+.+.+++. |++++++ +|+++..+++.....|.+.++ ..+++|.||+|+|..+..
T Consensus 191 ~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G-----~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 191 FDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATG-----RVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp ECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTS-----CEEECSEEEECCGGGCCC
T ss_pred EcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCC-----CEEECCEEEECCCCchhh
Confidence 46778899999999888 9999999 999998754323345666555 579999999999998654
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-09 Score=102.11 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 74 VPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+..+.+.+.+.+.+.|++++.+ +|+++..+++.....|.+.++ +.+++|.||.|+|.+...
T Consensus 170 ~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g-----~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQH-----GEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSS-----CEEECSEEEECCGGGCCC
T ss_pred EcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCC-----CEEEcCEEEECCCcchHH
Confidence 457788889988888889999999 899998754323345666655 479999999999998554
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=94.81 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=38.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
+.+||+||||||+|++||+.|+++|++|+|||+++.+||....
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~ 43 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence 0489999999999999999999999999999999998886543
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=97.11 Aligned_cols=137 Identities=15% Similarity=0.062 Sum_probs=83.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC--CcCCC----CCCC-----ee--e-e---cCCc--------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS--LWKKR----AYDR-----MK--L-H---LAKQ-------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~--~~~~~----~~~~-----~~--~-~---~~~~-------- 57 (381)
++||+|||||++|++||+.|++.|.+|+|+|+....++ .+... .... .. . + ....
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~ 86 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 48999999999999999999999999999999875532 11110 0000 00 0 0 0000
Q ss_pred -----------ccccCCCCCCCC---------CCCC-----------------CCHHHHHHHHHHHHHHhCCccccccEE
Q 035902 58 -----------FCELPHMPFPSR---------TPTF-----------------VPRISFINYVDNYVSQMGINPRYHRSV 100 (381)
Q Consensus 58 -----------~~~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (381)
++.-...++... +... .....+...+.+.+.+.+++++.++.|
T Consensus 87 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v 166 (588)
T 2wdq_A 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred HHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEEEeCcEE
Confidence 000001111100 0000 113567778888888889999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 101 ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 101 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+++..+++.....|...+...++...+.++.||+|||..
T Consensus 167 ~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~ 205 (588)
T 2wdq_A 167 LDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA 205 (588)
T ss_dssp EEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred EEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence 999875222333455544223344579999999999987
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-09 Score=95.98 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+||+|||||++|++||+.|++.|.+|+|+|+++.+||
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG 38 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGG 38 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBT
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccC
Confidence 7999999999999999999999999999999887776
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.8e-09 Score=98.81 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 74 VPRISFINYVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+..+.+.+.+.+++ .|++++.+ +|+++..+++.....|.+.++ .++++|+||.|+|.+...
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g-----~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQN-----GEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSS-----CEEECSEEEECSGGGCCC
T ss_pred EcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCC-----CEEEcCEEEECCCcchHH
Confidence 4567888899888888 89999888 599998764222334656554 359999999999998655
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.8e-09 Score=97.05 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=81.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||++|+.+|..|++.|.+|+|+|+.+.+. + ....++.+.+
T Consensus 168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------------~--~~~~~~~~~l 214 (455)
T 2yqu_A 168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL-------------------------------P--TMDLEVSRAA 214 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------T--TSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc-------------------------------c--ccCHHHHHHH
Confidence 679999999999999999999999999999876321 0 0124677777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.+++++++++|.+++.++ +.+.+.+.++ ..+.+|.||+|+|..|+.+.
T Consensus 215 ~~~l~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~~D~vv~A~G~~p~~~~ 268 (455)
T 2yqu_A 215 ERVFKKQGLTIRTGVRVTAVVPEA--KGARVELEGG-----EVLEADRVLVAVGRRPYTEG 268 (455)
T ss_dssp HHHHHHHTCEEECSCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECSCEEECCTT
T ss_pred HHHHHHCCCEEEECCEEEEEEEeC--CEEEEEECCC-----eEEEcCEEEECcCCCcCCCC
Confidence 888888899999999999998765 4555665544 57999999999999987653
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-09 Score=99.23 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCS 38 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~ 38 (381)
+||+|||||++|+++|+.|+++ |.+|+|||+....
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~ 73 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP 73 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 8999999999999999999999 9999999997533
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.8e-09 Score=94.14 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=81.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+.. . ....++.+.
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------~-~~~~~~~~~ 192 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP-------------------------------G-LLHPAAAKA 192 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T-TSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh-------------------------------c-ccCHHHHHH
Confidence 36899999999999999999999999999998763211 0 112467778
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.+++.|++++++++|.++..++ +.+.+.+.++ +.+.+|.||+|+|..|+.
T Consensus 193 l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g-----~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 193 VQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSDG-----EVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp HHHHHHTTTCEEEESCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECSCEEECC
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecC--CEEEEEECCC-----CEEECCEEEECcCCCcCH
Confidence 8888888899999999999998765 4556777665 579999999999999765
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.3e-09 Score=95.94 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=35.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+||+|||||++|++||+.|+++|.+|+|+|+++.+||.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~ 38 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGR 38 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCc
Confidence 48999999999999999999999999999999888763
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-09 Score=98.65 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=33.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS-VPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~ 36 (381)
|+++||+|||||++|+++|+.|+++| .+|+|||++.
T Consensus 21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~ 57 (448)
T 3axb_A 21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57 (448)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCC
Confidence 66689999999999999999999999 8999999933
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-08 Score=93.27 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=82.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+.. ....++.+.+
T Consensus 184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~l 230 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA---------------------------------SMDGEVAKAT 230 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS---------------------------------SSCHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc---------------------------------ccCHHHHHHH
Confidence 6899999999999999999999999999999864321 0124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|++++++++|.++..+++.+...+.+.+...++...+.+|.||+|+|..|+..
T Consensus 231 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp HHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred HHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence 888888999999999999998731124455666532122236799999999999998765
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=94.79 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=82.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+|+.+.+. + ....++.+.+
T Consensus 170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~l 216 (464)
T 2eq6_A 170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL-------------------------------P--QGDPETAALL 216 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------T--TSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc-------------------------------c--ccCHHHHHHH
Confidence 679999999999999999999999999999876321 0 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++++++|.+++.++ +...+.+.+...++...+.+|.||+|+|..|+...
T Consensus 217 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~ 275 (464)
T 2eq6_A 217 RRALEKEGIRVRTKTKAVGYEKKK--DGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG 275 (464)
T ss_dssp HHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred HHHHHhcCCEEEcCCEEEEEEEeC--CEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence 888888899999999999998765 44556665211122347999999999999987654
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=96.80 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=35.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+||+|||||++|+++|+.|+++|.+|+|+|+++.+||.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~ 38 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGR 38 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCce
Confidence 47999999999999999999999999999999888773
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.2e-08 Score=95.27 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+...+.+.|+.++.+++|+++..++ +..+.|.+.+...++...++||.||+|+|.+
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~-~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w 249 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG-DQIVGVKARDLLTDEVIEIKAKLVINTSGPW 249 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeC-CEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence 34455556666778899999999999998875 2345577654323333579999999999998
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-08 Score=96.33 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+...+.+.+.+.+++++.++.|+++..++ +....+...+...++...+.++.||+|||...
T Consensus 157 G~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 157 GHTMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHHhCCCEEEECcEEEEEEecC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 45677788888888899999999999998754 22223444332233445799999999999883
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-08 Score=95.26 Aligned_cols=137 Identities=20% Similarity=0.168 Sum_probs=81.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCC--CcCCCC----C---CCeee---e---cCCc--------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSAS--LWKKRA----Y---DRMKL---H---LAKQ-------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~--~~~~~~----~---~~~~~---~---~~~~-------- 57 (381)
++||+|||||++|+++|+.|++.| .+|+|||+....++ .|.... . +.... + ....
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~ 84 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD 84 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 489999999999999999999999 99999999864432 111100 0 00000 0 0000
Q ss_pred -----------ccccCCCCCCC---------CCCC-------C---CCHHHHHHHHHHHHHHhC-CccccccEEEEEEEe
Q 035902 58 -----------FCELPHMPFPS---------RTPT-------F---VPRISFINYVDNYVSQMG-INPRYHRSVESASYD 106 (381)
Q Consensus 58 -----------~~~~~~~~~~~---------~~~~-------~---~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~ 106 (381)
++.....++.. .+.. + .+...+...+.+.+.+.+ ++++.++.|+++..+
T Consensus 85 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~ 164 (602)
T 1kf6_A 85 YFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD 164 (602)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe
Confidence 00000011100 0000 0 114567777777777777 899999999999876
Q ss_pred CCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 107 ENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 107 ~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
+ +....+...+...++...+.++.||+|||...
T Consensus 165 ~-g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s 197 (602)
T 1kf6_A 165 D-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 197 (602)
T ss_dssp T-TEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred C-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence 5 22222433332223335799999999999973
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=92.85 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=81.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 217 (455)
T 1ebd_A 171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-------------------------------SG--FEKQMAAII 217 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 10 124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++++++|.++..++ +...+.+.+. ++...+.+|.||+|+|..|+...
T Consensus 218 ~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~~--g~~~~~~~D~vv~a~G~~p~~~~ 274 (455)
T 1ebd_A 218 KKRLKKKGVEVVTNALAKGAEERE--DGVTVTYEAN--GETKTIDADYVLVTVGRRPNTDE 274 (455)
T ss_dssp HHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEET--TEEEEEEESEEEECSCEEESCSS
T ss_pred HHHHHHCCCEEEeCCEEEEEEEeC--CeEEEEEEeC--CceeEEEcCEEEECcCCCcccCc
Confidence 888888899999999999998765 4455555421 12267999999999999987643
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=97.17 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=76.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCCCCee--------------------ee-------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAYDRMK--------------------LH------- 53 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~~--------------------~~------- 53 (381)
++||+|||||++|+++|+.|++ |.+|+|+|+....++. |......... .+
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~d~~~v~~~ 86 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFV 86 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCChhhcCCCEEEecCCCCCHHHHHHHHHHhhcccCCHHHHHHH
Confidence 3899999999999999999999 9999999998765431 1111000000 00
Q ss_pred ---cC--CcccccCCCCCCCC--------C----------CC-C----CCHHHHHHHHHHHHHH-hCCccccccEEEEEE
Q 035902 54 ---LA--KQFCELPHMPFPSR--------T----------PT-F----VPRISFINYVDNYVSQ-MGINPRYHRSVESAS 104 (381)
Q Consensus 54 ---~~--~~~~~~~~~~~~~~--------~----------~~-~----~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~ 104 (381)
.+ ..++.....++... + +. + .+...+.+.+.+.+++ .+++++.++.|+++.
T Consensus 87 ~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~~~~~v~~L~ 166 (540)
T 1chu_A 87 ASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLI 166 (540)
T ss_dssp HHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEEEEE
T ss_pred HHhHHHHHHHHHHcCCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCEEEeCcEEEEEE
Confidence 00 00000001111000 0 00 0 1223455555666666 689999999999998
Q ss_pred EeCCC------CeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 105 YDENA------KAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 105 ~~~~~------~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
.+++. ....|.+.+...++...+.++.||+|||...
T Consensus 167 ~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 208 (540)
T 1chu_A 167 VSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS 208 (540)
T ss_dssp EGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred EcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 73322 2333555542223445799999999999884
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=3.8e-08 Score=95.27 Aligned_cols=137 Identities=18% Similarity=0.106 Sum_probs=83.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCC----CCCCeeeecCC--------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKR----AYDRMKLHLAK-------------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~----~~~~~~~~~~~-------------------- 56 (381)
++||+|||||+||++||+.|++.|.+|+|+|+....++. +... ....+..+...
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v~ 97 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIH 97 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 379999999999999999999999999999998644321 1110 00000000000
Q ss_pred ----------cccccCCCCCCCC---------CCC---------------C---CCHHHHHHHHHHHHHHhCCccccccE
Q 035902 57 ----------QFCELPHMPFPSR---------TPT---------------F---VPRISFINYVDNYVSQMGINPRYHRS 99 (381)
Q Consensus 57 ----------~~~~~~~~~~~~~---------~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
.++.-...++... +.. + .+...+...+.+.+.+.+++++.++.
T Consensus 98 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~~~~~ 177 (621)
T 2h88_A 98 YMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYF 177 (621)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEEETEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCEEEEceE
Confidence 0000001111000 000 0 12446777787777778999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 100 VESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 100 v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
|+++..++ +....|...+...++...+.++.||+|||...
T Consensus 178 v~~Li~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 178 ALDLLMEN-GECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp EEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred EEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 99998764 22233454432233446799999999999883
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=93.32 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=81.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. -..++.+.+
T Consensus 168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 214 (450)
T 1ges_A 168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-------------------------------PS--FDPMISETL 214 (450)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh-------------------------------hh--hhHHHHHHH
Confidence 679999999999999999999999999999876321 00 123677778
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|++++++++|.++..++ ++...+.+.++ +.+.+|.||+|+|..|+..
T Consensus 215 ~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~g-----~~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 215 VEVMNAEGPQLHTNAIPKAVVKNT-DGSLTLELEDG-----RSETVDCLIWAIGREPAND 268 (450)
T ss_dssp HHHHHHHSCEEECSCCEEEEEECT-TSCEEEEETTS-----CEEEESEEEECSCEEESCT
T ss_pred HHHHHHCCCEEEeCCEEEEEEEeC-CcEEEEEECCC-----cEEEcCEEEECCCCCcCCC
Confidence 888888899999999999998754 23355777665 5799999999999998765
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=93.44 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=80.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. -..++.+.+
T Consensus 167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 213 (463)
T 2r9z_A 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-------------------------------FQ--FDPLLSATL 213 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 679999999999999999999999999999876321 00 123566777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceE-EEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE-EYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~-~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++.|.++..++ +...+.+.++ + .+.+|.||+|+|..|+..
T Consensus 214 ~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~G-----~~~i~~D~vv~a~G~~p~~~ 267 (463)
T 2r9z_A 214 AENMHAQGIETHLEFAVAALERDA--QGTTLVAQDG-----TRLEGFDSVIWAVGRAPNTR 267 (463)
T ss_dssp HHHHHHTTCEEESSCCEEEEEEET--TEEEEEETTC-----CEEEEESEEEECSCEEESCT
T ss_pred HHHHHHCCCEEEeCCEEEEEEEeC--CeEEEEEeCC-----cEEEEcCEEEECCCCCcCCC
Confidence 888888899999999999998764 3356777665 4 799999999999998764
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-08 Score=99.01 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++.|++++.+++|+++..++ ++.+.|.+.+ ..++||.||+|+|.+
T Consensus 149 ~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~-~~v~~V~t~~------G~i~Ad~VV~AaG~~ 206 (830)
T 1pj5_A 149 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTAD------GVIPADIVVSCAGFW 206 (830)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETT------EEEECSEEEECCGGG
T ss_pred cHHHHHHHHHHHHHHcCCEEECCceEEEEEEeC-CEEEEEEECC------cEEECCEEEECCccc
Confidence 455778888888888899999999999998865 2323455544 369999999999987
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-09 Score=97.57 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=35.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC------CCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS------VPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g------~~v~lie~~~~~g~ 40 (381)
.+||+|||||++|++||+.|++.| .+|+|+|+++.+||
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG 48 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG 48 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCT
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCc
Confidence 379999999999999999999999 89999999988876
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=94.23 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=80.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++++|||||++|+.+|..|++.|.+|+++|+.+.+... ....++.+.
T Consensus 149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 196 (447)
T 1nhp_A 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV--------------------------------YLDKEFTDV 196 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------------------------TCCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc--------------------------------cCCHHHHHH
Confidence 378999999999999999999999999999998632110 012467788
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
+.+.+++.|+++++++.|.++..++ +.+.+.+ ++ ..+.+|.||+|+|..|+.+.++
T Consensus 197 l~~~l~~~gv~i~~~~~v~~i~~~~--~v~~v~~-~~-----~~i~~d~vi~a~G~~p~~~~~~ 252 (447)
T 1nhp_A 197 LTEEMEANNITIATGETVERYEGDG--RVQKVVT-DK-----NAYDADLVVVAVGVRPNTAWLK 252 (447)
T ss_dssp HHHHHHTTTEEEEESCCEEEEECSS--BCCEEEE-SS-----CEEECSEEEECSCEEESCGGGT
T ss_pred HHHHHHhCCCEEEcCCEEEEEEccC--cEEEEEE-CC-----CEEECCEEEECcCCCCChHHHH
Confidence 8888888899999999999987642 3223444 33 4699999999999998765433
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.76 E-value=9e-08 Score=90.67 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=84.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.+
T Consensus 199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~d~~~~~~l 245 (491)
T 3urh_A 199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL-------------------------------G--GMDGEVAKQL 245 (491)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------S--SSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc-------------------------------c--cCCHHHHHHH
Confidence 679999999999999999999999999999876321 0 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++++.++..++ +...+.+.+...++...+.+|.||+|+|..|+...
T Consensus 246 ~~~l~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~ 304 (491)
T 3urh_A 246 QRMLTKQGIDFKLGAKVTGAVKSG--DGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDG 304 (491)
T ss_dssp HHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTSCCCEEEEESEEEECCCCEECCTT
T ss_pred HHHHHhCCCEEEECCeEEEEEEeC--CEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCc
Confidence 888888899999999999998765 55567776532233467999999999999977653
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.4e-08 Score=89.66 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=82.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + .....++.+.
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l-------------------------------~-~~~~~~~~~~ 199 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL-------------------------------A-RVAGEALSEF 199 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------T-TTSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh-------------------------------h-hhcCHHHHHH
Confidence 3679999999999999999999999999999886321 0 0112577888
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.+++.|+++++++.|.++..++ .+...|.+.++ +.+.+|.||+|+|..|+.
T Consensus 200 l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~v~l~dG-----~~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 200 YQAEHRAHGVDLRTGAAMDCIEGDG-TKVTGVRMQDG-----SVIPADIVIVGIGIVPCV 253 (415)
T ss_dssp HHHHHHHTTCEEEETCCEEEEEESS-SBEEEEEESSS-----CEEECSEEEECSCCEESC
T ss_pred HHHHHHhCCCEEEECCEEEEEEecC-CcEEEEEeCCC-----CEEEcCEEEECCCCccCh
Confidence 8888899999999999999998754 23335777776 679999999999999775
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.6e-08 Score=90.08 Aligned_cols=108 Identities=13% Similarity=0.144 Sum_probs=81.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ....++.+.+
T Consensus 179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~-~~~~~~~~~l 226 (474)
T 1zmd_A 179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVG-------------------------------GV-GIDMEISKNF 226 (474)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------CS-SCCHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccC-------------------------------Cc-ccCHHHHHHH
Confidence 679999999999999999999999999999886321 00 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++++++|.++..++ ++...+.+.+...++...+.+|.||+|+|..|+...
T Consensus 227 ~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~ 286 (474)
T 1zmd_A 227 QRILQKQGFKFKLNTKVTGATKKS-DGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKN 286 (474)
T ss_dssp HHHHHHTTCEEECSEEEEEEEECT-TSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTT
T ss_pred HHHHHHCCCEEEeCceEEEEEEcC-CceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCc
Confidence 888888999999999999998764 222456543211112367999999999999987643
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=92.77 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=78.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. + ....++.+.+
T Consensus 172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~l 218 (458)
T 1lvl_A 172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-------------------------------P--TYDSELTAPV 218 (458)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------T--TSCHHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc-------------------------------c--ccCHHHHHHH
Confidence 689999999999999999999999999999986331 1 0124677777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++++++|.+++. + + ..+...++ +...+.+|.||+|+|..|+.+.
T Consensus 219 ~~~l~~~gv~i~~~~~v~~i~~-~--~-v~v~~~~G---~~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 219 AESLKKLGIALHLGHSVEGYEN-G--C-LLANDGKG---GQLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp HHHHHHHTCEEETTCEEEEEET-T--E-EEEECSSS---CCCEECCSCEEECCCEEECCSS
T ss_pred HHHHHHCCCEEEECCEEEEEEe-C--C-EEEEECCC---ceEEEECCEEEECcCCCcCCCC
Confidence 8888888999999999999875 3 2 33432122 2257899999999999987654
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.1e-08 Score=91.16 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=80.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~l 223 (500)
T 1onf_A 177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-------------------------------RK--FDESVINVL 223 (500)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------cc--cchhhHHHH
Confidence 579999999999999999999999999999876321 00 124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEE-EEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEE-YVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~-~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.|.++..+++ +...+.+.++ +. +.+|.||+|+|..|+..
T Consensus 224 ~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~v~~~~g-----~~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 224 ENDMKKNNINIVTFADVVEIKKVSD-KNLSIHLSDG-----RIYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp HHHHHHTTCEEECSCCEEEEEESST-TCEEEEETTS-----CEEEEESEEEECCCBCCTTT
T ss_pred HHHHHhCCCEEEECCEEEEEEEcCC-ceEEEEECCC-----cEEEECCEEEECCCCCcCCC
Confidence 8888889999999999999987542 3355776655 34 89999999999998764
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-08 Score=93.00 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=36.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASL 41 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~ 41 (381)
+.+||+|||||++|++||++|+++|. +|+|+|+++.+||.
T Consensus 1 m~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~ 42 (477)
T 3nks_A 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGW 42 (477)
T ss_dssp -CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTT
T ss_pred CCceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCc
Confidence 03799999999999999999999999 99999999888773
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.8e-08 Score=90.17 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=80.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. + ...++.+.+
T Consensus 177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~---~~~~~~~~l 222 (467)
T 1zk7_A 177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF-------------------------------R---EDPAIGEAV 222 (467)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------T---SCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC-------------------------------C---CCHHHHHHH
Confidence 679999999999999999999999999999876321 1 124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|++++++++|.++..++ +.+.+.++ + .++.+|.||+|+|.+|+..
T Consensus 223 ~~~l~~~Gv~i~~~~~v~~i~~~~--~~~~v~~~-~-----~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 223 TAAFRAEGIEVLEHTQASQVAHMD--GEFVLTTT-H-----GELRADKLLVATGRTPNTR 274 (467)
T ss_dssp HHHHHHTTCEEETTCCEEEEEEET--TEEEEEET-T-----EEEEESEEEECSCEEESCT
T ss_pred HHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEC-C-----cEEEcCEEEECCCCCcCCC
Confidence 888888899999999999998764 45556654 2 5799999999999997754
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.3e-08 Score=91.24 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=81.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.+
T Consensus 178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~~~~~~~~l 224 (470)
T 1dxl_A 178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-------------------------------P--TMDAEIRKQF 224 (470)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------T--TSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc-------------------------------c--cccHHHHHHH
Confidence 689999999999999999999999999999886321 0 0124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++++++|.++..++ +...+.+.+...++...+.+|.||+|+|..|+...
T Consensus 225 ~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 283 (470)
T 1dxl_A 225 QRSLEKQGMKFKLKTKVVGVDTSG--DGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSG 283 (470)
T ss_dssp HHHHHHSSCCEECSEEEEEEECSS--SSEEEEEEESSSCCCEEEEESEEECCCCEEECCTT
T ss_pred HHHHHHcCCEEEeCCEEEEEEEcC--CeEEEEEEecCCCcceEEECCEEEECCCCCcCCCC
Confidence 888888999999999999998654 33556655311122367999999999999977543
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.71 E-value=5.6e-09 Score=91.55 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=104.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC-CCeeEEEEecCcceechhhHHHHHHHHhhC-cHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC-GACTSIVVRGPVHVLTREIVFAGMLLLKFL-PCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~-g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
.+++|||+|++|+.+|..|++. |.+|+++.+.+ .+....... ...+...+ .....+. +...++.
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~-~~gg~~~~~-~~~~~~~~~~~~~~~~------------l~~~G~~ 105 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV-SPGGGAWLG-GQLFSAMIVRKPAHLF------------LDEIGVA 105 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS-SCCTTTTCC-STTCCCEEEETTTHHH------------HHHHTCC
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC-CCCCceecC-CcchHHHHcCcHHHHH------------HHHcCCC
Confidence 4799999999999999999997 99999999986 221100000 00000000 0000000 0111222
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeC--C---eEEEc---------CC-----cEeeccE
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINR--N---EVEFE---------NG-----KIEEFEA 305 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~--~---~v~~~---------~g-----~~~~~D~ 305 (381)
....+.+.. ......+...+.+.+.+ .+++++.+ ++++.. + ++.+. ++ .++++|.
T Consensus 106 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~ 182 (284)
T 1rp0_A 106 YDEQDTYVV---VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKI 182 (284)
T ss_dssp CEECSSEEE---ESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEE
T ss_pred cccCCCEEE---ecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCE
Confidence 111111100 00111122234445544 68999887 777753 3 33442 22 5789999
Q ss_pred EEEecCCCCCcchhccccC-------CcccccCCCCCCCC------CCCCCCCCcEEEEeccccc--------cc--Ccc
Q 035902 306 IIFATGYKSTVRNWLKRAD-------KDFFDEYGMPKRNC------PNHWKGENGLYCAGFSRTG--------LH--GIS 362 (381)
Q Consensus 306 vi~a~G~~p~~~~~~~~~~-------~~~~~~~g~~~~~~------~~~~~~~~~ifa~Gd~~~~--------~~--~a~ 362 (381)
+|.|+|..+....+.. .. .++....| +.++. ....+..|++|++|++... +. .+.
T Consensus 183 VV~AtG~~s~~~~~~~-~~~~~~g~~~~v~~~~g-~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~ 260 (284)
T 1rp0_A 183 VVSSCGHDGPFGATGV-KRLKSIGMIDHVPGMKA-LDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM 260 (284)
T ss_dssp EEECCCSSSTTTTHHH-HHHHHTTSSSCCCCCEE-ECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHH
T ss_pred EEECCCCchHHHHHHH-HHhhhccCCCCcCCcCC-chhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHHHHHH
Confidence 9999999888754432 10 11111122 11110 0122456999999998532 11 677
Q ss_pred HHHHHHHHHhhhccccCC
Q 035902 363 IDAKNIANDINLALTDHQ 380 (381)
Q Consensus 363 ~~a~~~a~~i~~~l~~~~ 380 (381)
.+|+.+|.+|.+.|++.+
T Consensus 261 ~sG~~~a~~i~~~l~~~~ 278 (284)
T 1rp0_A 261 ISGQKAGQLALKALGLPN 278 (284)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HhHHHHHHHHHHHhhhhh
Confidence 899999999999997764
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.9e-08 Score=89.08 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=81.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..+.+.|.+|+++++.+.+. + .....++.+.+
T Consensus 143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------------------------------~-~~~~~~~~~~l 190 (404)
T 3fg2_P 143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM-------------------------------A-RVVTPEISSYF 190 (404)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT-------------------------------T-TTSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch-------------------------------h-hccCHHHHHHH
Confidence 679999999999999999999999999999876321 0 01124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|+++++++.|.++..++ .+...|.+.++ +.+.+|.||+|+|..|+.
T Consensus 191 ~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~V~~~dG-----~~i~aD~Vv~a~G~~p~~ 243 (404)
T 3fg2_P 191 HDRHSGAGIRMHYGVRATEIAAEG-DRVTGVVLSDG-----NTLPCDLVVVGVGVIPNV 243 (404)
T ss_dssp HHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTS-----CEEECSEEEECCCEEECC
T ss_pred HHHHHhCCcEEEECCEEEEEEecC-CcEEEEEeCCC-----CEEEcCEEEECcCCccCH
Confidence 888889999999999999998764 23334677766 679999999999998765
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=88.98 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=81.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.+
T Consensus 172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 218 (464)
T 2a8x_A 172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL-------------------------------PN--EDADVSKEI 218 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999886321 10 124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe-ecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAK-NTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|+++++++++.++..++ +...+.+. ++ +...+.+|.||+|+|..|+...
T Consensus 219 ~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~~g---~~~~~~~D~vv~a~G~~p~~~~ 275 (464)
T 2a8x_A 219 EKQFKKLGVTILTATKVESIADGG--SQVTVTVTKDG---VAQELKAEKVLQAIGFAPNVEG 275 (464)
T ss_dssp HHHHHHHTCEEECSCEEEEEEECS--SCEEEEEESSS---CEEEEEESEEEECSCEEECCSS
T ss_pred HHHHHHcCCEEEeCcEEEEEEEcC--CeEEEEEEcCC---ceEEEEcCEEEECCCCCccCCC
Confidence 888888899999999999998754 33445554 32 2357999999999999987653
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.3e-08 Score=90.99 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=82.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+..|..+++.|.+|+|+++...++ . ...++.+.+
T Consensus 224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~--------------------------------~--~D~ei~~~l 269 (542)
T 4b1b_A 224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR--------------------------------G--FDQQCAVKV 269 (542)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST--------------------------------T--SCHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc--------------------------------c--cchhHHHHH
Confidence 689999999999999999999999999998764221 0 125788888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
++.+++.++.++++..+..+...+ +...+.+.++ ..+.+|.|++|+|..|+...+
T Consensus 270 ~~~l~~~gi~~~~~~~v~~~~~~~--~~~~v~~~~~-----~~~~~D~vLvAvGR~Pnt~~L 324 (542)
T 4b1b_A 270 KLYMEEQGVMFKNGILPKKLTKMD--DKILVEFSDK-----TSELYDTVLYAIGRKGDIDGL 324 (542)
T ss_dssp HHHHHHTTCEEEETCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECSCEEESCGGG
T ss_pred HHHHHhhcceeecceEEEEEEecC--CeEEEEEcCC-----CeEEEEEEEEcccccCCcccc
Confidence 888999999999999999998876 5555666655 567899999999999887543
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.1e-08 Score=89.10 Aligned_cols=96 Identities=22% Similarity=0.347 Sum_probs=78.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ....++.+.+
T Consensus 146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~l 193 (408)
T 2gqw_A 146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS-------------------------------R-AAPATLADFV 193 (408)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------T-TSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-------------------------------c-ccCHHHHHHH
Confidence 6899999999999999999999999999999863210 0 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|+++++++.|.++. + + .|.+.++ +.+.+|.||+|+|..|+.
T Consensus 194 ~~~l~~~GV~i~~~~~v~~i~--~--~--~v~~~~g-----~~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 194 ARYHAAQGVDLRFERSVTGSV--D--G--VVLLDDG-----TRIAADMVVVGIGVLAND 241 (408)
T ss_dssp HHHHHHTTCEEEESCCEEEEE--T--T--EEEETTS-----CEEECSEEEECSCEEECC
T ss_pred HHHHHHcCcEEEeCCEEEEEE--C--C--EEEECCC-----CEEEcCEEEECcCCCccH
Confidence 888888999999999999987 3 3 3777665 579999999999999764
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.5e-08 Score=88.89 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=79.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ....++.+.+
T Consensus 150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~-~~~~~~~~~l 197 (431)
T 1q1r_A 150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL-------------------------------ER-VTAPPVSAFY 197 (431)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT-------------------------------TT-TSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc-------------------------------cc-hhhHHHHHHH
Confidence 689999999999999999999999999999876321 00 0124677778
Q ss_pred HHHHHHhCCccccccEEEEEEE--eCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASY--DENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|+++++++.+.++.. ++ .+...|.+.++ +.+.+|.||+|+|..|+.
T Consensus 198 ~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~v~~~~G-----~~i~~D~Vv~a~G~~p~~ 252 (431)
T 1q1r_A 198 EHLHREAGVDIRTGTQVCGFEMSTDQ-QKVTAVLCEDG-----TRLPADLVIAGIGLIPNC 252 (431)
T ss_dssp HHHHHHHTCEEECSCCEEEEEECTTT-CCEEEEEETTS-----CEEECSEEEECCCEEECC
T ss_pred HHHHHhCCeEEEeCCEEEEEEeccCC-CcEEEEEeCCC-----CEEEcCEEEECCCCCcCc
Confidence 8888888999999999999986 32 23335666665 579999999999998764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-07 Score=88.09 Aligned_cols=105 Identities=20% Similarity=0.193 Sum_probs=83.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+++++...+. . ...++.+.+
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------~--~d~~~~~~l 233 (483)
T 3dgh_A 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR--------------------------------G--FDQQMAELV 233 (483)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST--------------------------------T--SCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc--------------------------------c--cCHHHHHHH
Confidence 579999999999999999999999999998753110 0 124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.++...+ ++...+.+.++..++...+.+|.||+|+|..|+..
T Consensus 234 ~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 234 AASMEERGIPFLRKTVPLSVEKQD-DGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp HHHHHHTTCCEEETEEEEEEEECT-TSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC-CCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence 888888899999999999998754 24456777776545556899999999999987654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.9e-07 Score=86.20 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=80.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.+
T Consensus 175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~d~~~~~~l 221 (492)
T 3ic9_A 175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN---------------------------------LQDEEMKRYA 221 (492)
T ss_dssp SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT---------------------------------CCCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc---------------------------------cCCHHHHHHH
Confidence 6899999999999999999999999999998864310 0124677777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++. +++++++.+..+..++ +...+.+.+ ..++...+.+|.||+|+|..|+...
T Consensus 222 ~~~l~~~-V~i~~~~~v~~i~~~~--~~v~v~~~~-~~G~~~~i~~D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 222 EKTFNEE-FYFDAKARVISTIEKE--DAVEVIYFD-KSGQKTTESFQYVLAATGRKANVDK 278 (492)
T ss_dssp HHHHHTT-SEEETTCEEEEEEECS--SSEEEEEEC-TTCCEEEEEESEEEECSCCEESCSS
T ss_pred HHHHhhC-cEEEECCEEEEEEEcC--CEEEEEEEe-CCCceEEEECCEEEEeeCCccCCCC
Confidence 7777776 8999999999998765 444465542 1123467999999999999987654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=88.45 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=80.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~l 221 (468)
T 2qae_A 175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA-------------------------------PT--LDEDVTNAL 221 (468)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc-------------------------------cc--CCHHHHHHH
Confidence 689999999999999999999999999999886321 10 124677788
Q ss_pred HHHH-HHhCCccccccEEEEEEEeCCCCeEEEEEe--ecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYV-SQMGINPRYHRSVESASYDENAKAWIIVAK--NTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+ ++.|++++++++|.++..++ +...+.+. ++ +...+.+|.||+|+|..|+...
T Consensus 222 ~~~l~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~~~g---~~~~i~~D~vv~a~G~~p~~~~ 280 (468)
T 2qae_A 222 VGALAKNEKMKFMTSTKVVGGTNNG--DSVSLEVEGKNG---KRETVTCEALLVSVGRRPFTGG 280 (468)
T ss_dssp HHHHHHHTCCEEECSCEEEEEEECS--SSEEEEEECC------EEEEEESEEEECSCEEECCTT
T ss_pred HHHHhhcCCcEEEeCCEEEEEEEcC--CeEEEEEEcCCC---ceEEEECCEEEECCCcccCCCC
Confidence 8888 88899999999999998754 33556654 32 2357999999999999987643
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=87.93 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=77.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeec--CC---cccccCCC--------CCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHL--AK---QFCELPHM--------PFP 67 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~--~~---~~~~~~~~--------~~~ 67 (381)
.++|+|||||..|+.+|..|++. +.+|+++++...+-. .....+.... +. .+..++.. ...
T Consensus 227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p----~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 302 (463)
T 3s5w_A 227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP----ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHN 302 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB----CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGG
T ss_pred CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC----ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhc
Confidence 36899999999999999999999 889999998864311 0000000000 00 00000000 000
Q ss_pred CCCCCCCCHHHHHHHH----HHHHH-HhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 68 SRTPTFVPRISFINYV----DNYVS-QMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 68 ~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
..+. ......+.+.. ++... ..++.+++++.|+++..++ +.+.+.+.+...++...+.+|.||+|||..|.
T Consensus 303 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 303 TNYS-VVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA--QGIELALRDAGSGELSVETYDAVILATGYERQ 378 (463)
T ss_dssp GTSS-CBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET--TEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred cCCC-cCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC--CEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence 0000 01111111111 11111 1488899999999998865 66888888654555667999999999999987
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-08 Score=92.21 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=80.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .....++.+.+
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~--------------------------------~~~~~~~~~~l 191 (410)
T 3ef6_A 144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV--------------------------------RVLGRRIGAWL 191 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH--------------------------------HHHCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch--------------------------------hhcCHHHHHHH
Confidence 6899999999999999999999999999998763210 00024677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|+++++++.|.++..++ +...|.+.++ +.+.+|.||+|+|..|+.
T Consensus 192 ~~~l~~~GV~i~~~~~v~~i~~~~--~~~~v~~~dg-----~~i~aD~Vv~a~G~~p~~ 243 (410)
T 3ef6_A 192 RGLLTELGVQVELGTGVVGFSGEG--QLEQVMASDG-----RSFVADSALICVGAEPAD 243 (410)
T ss_dssp HHHHHHHTCEEECSCCEEEEECSS--SCCEEEETTS-----CEEECSEEEECSCEEECC
T ss_pred HHHHHHCCCEEEeCCEEEEEeccC--cEEEEEECCC-----CEEEcCEEEEeeCCeecH
Confidence 888888899999999999998654 4345777776 689999999999999765
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.1e-08 Score=92.76 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=80.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+. + ....++.+.+
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~l 232 (482)
T 1ojt_A 186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-------------------------------Q--GADRDLVKVW 232 (482)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------T--TSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc-------------------------------c--ccCHHHHHHH
Confidence 689999999999999999999999999999886321 0 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|++++++++|.++..++ +...+.+.+... +.+.+.+|.||+|+|..|+..
T Consensus 233 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~~-~g~~~~~D~vv~a~G~~p~~~ 289 (482)
T 1ojt_A 233 QKQNEYRFDNIMVNTKTVAVEPKE--DGVYVTFEGANA-PKEPQRYDAVLVAAGRAPNGK 289 (482)
T ss_dssp HHHHGGGEEEEECSCEEEEEEEET--TEEEEEEESSSC-CSSCEEESCEEECCCEEECGG
T ss_pred HHHHHhcCCEEEECCEEEEEEEcC--CeEEEEEeccCC-CceEEEcCEEEECcCCCcCCC
Confidence 888888899999999999998765 445566665100 014578999999999997753
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=90.25 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=81.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..+.+.|.+|+++++.+.+. +. ...++.+.+
T Consensus 183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~l 229 (499)
T 1xdi_A 183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL-------------------------------PY--EDADAALVL 229 (499)
T ss_dssp SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS-------------------------------CC--SSHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999886321 10 124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|+++++++.|.++..++ +...+.+.++ ..+.+|.||+|+|..|+...
T Consensus 230 ~~~l~~~GV~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~aD~Vv~a~G~~p~~~~ 283 (499)
T 1xdi_A 230 EESFAERGVRLFKNARAASVTRTG--AGVLVTMTDG-----RTVEGSHALMTIGSVPNTSG 283 (499)
T ss_dssp HHHHHHTTCEEETTCCEEEEEECS--SSEEEEETTS-----CEEEESEEEECCCEEECCSS
T ss_pred HHHHHHCCCEEEeCCEEEEEEEeC--CEEEEEECCC-----cEEEcCEEEECCCCCcCCCc
Confidence 888888999999999999998754 3445555444 57999999999999987643
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=90.80 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=81.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 261 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------------------LI--KDNETRAYV 261 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------TC--CSHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc-------------------------------cc--ccHHHHHHH
Confidence 689999999999999999999999999999886321 10 124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCe---EEEEEeecCCCceE-EEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKA---WIIVAKNTALDAYE-EYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~---~~v~~~~~~~~~~~-~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|++++++++|.++..+++ +. +.|.+.++ + .+.+|.||+|+|..|+..
T Consensus 262 ~~~l~~~GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G-----~~~i~aD~Vv~A~G~~p~~~ 319 (523)
T 1mo9_A 262 LDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNG-----EMRIETDFVFLGLGEQPRSA 319 (523)
T ss_dssp HHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTE-----EEEEECSCEEECCCCEECCH
T ss_pred HHHHHhCCcEEEECCEEEEEEEcCC-CceEEEEEEECCC-----cEEEEcCEEEECcCCccCCc
Confidence 8888889999999999999987542 32 55666554 4 799999999999998764
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3e-07 Score=86.99 Aligned_cols=106 Identities=10% Similarity=0.001 Sum_probs=82.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+++++...+. . -..++.+.+
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------~--~d~~~~~~l 231 (488)
T 3dgz_A 186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR--------------------------------G--FDQQMSSLV 231 (488)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--------------------------------T--SCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc--------------------------------c--CCHHHHHHH
Confidence 679999999999999999999999999999864111 0 124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.++++++++.+.++...+ ++...+.+.+...++...+.+|.||+|+|..|+...
T Consensus 232 ~~~l~~~gv~~~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~ 291 (488)
T 3dgz_A 232 TEHMESHGTQFLKGCVPSHIKKLP-TNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT 291 (488)
T ss_dssp HHHHHHTTCEEEETEEEEEEEECT-TSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGG
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCc
Confidence 888888999999999999997743 244557666643334456899999999999977643
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8.8e-08 Score=90.63 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=81.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
.+++|||||+.|+.+|..|.+. |.+|+++++.+.+. +. -..++.
T Consensus 188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~ 234 (490)
T 1fec_A 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------------------------------RG--FDSELR 234 (490)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------------------------------TT--SCHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc-------------------------------cc--cCHHHH
Confidence 6899999999999999999999 99999999986321 00 124677
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+.+++.|+++++++.|.++..++ .+...|.+.++ +.+.+|.||+|+|..|+..
T Consensus 235 ~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~G-----~~i~~D~vv~a~G~~p~~~ 291 (490)
T 1fec_A 235 KQLTEQLRANGINVRTHENPAKVTKNA-DGTRHVVFESG-----AEADYDVVMLAIGRVPRSQ 291 (490)
T ss_dssp HHHHHHHHHTTEEEEETCCEEEEEECT-TSCEEEEETTS-----CEEEESEEEECSCEEESCT
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcC-CCEEEEEECCC-----cEEEcCEEEEccCCCcCcc
Confidence 788888888899999999999998754 23456777665 4799999999999998764
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-07 Score=87.82 Aligned_cols=107 Identities=15% Similarity=0.040 Sum_probs=82.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.+
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~d~~~~~~~ 234 (478)
T 3dk9_A 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------R--SFDSMISTNC 234 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------T--TSCHHHHHHH
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc-------------------------------c--ccCHHHHHHH
Confidence 689999999999999999999999999999876321 0 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCce--EEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAY--EEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~--~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++.++.+.++...++.....+.+.+...++. ..+.+|.||+|+|..|+..
T Consensus 235 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 235 TEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp HHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCT
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCC
Confidence 88888899999999999999875422134566655322222 6799999999999997765
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-07 Score=91.24 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=79.3
Q ss_pred cccEEEECCCHHHHHHHHHHH---h-CCCCeEEEecCCCCCC-CcCCCC--CC-Ce--e-----eecCCcc---------
Q 035902 3 EVPVVIVGAGPAGLATSACLN---N-LSVPNIILEREDCSAS-LWKKRA--YD-RM--K-----LHLAKQF--------- 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~---~-~g~~v~lie~~~~~g~-~~~~~~--~~-~~--~-----~~~~~~~--------- 58 (381)
++||+|||||+||++||+.|+ + .|.+|+|+|+....++ .+.... .. .+ . .+....+
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~ 101 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMM 101 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHHTT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHHhc
Confidence 379999999999999999999 6 8999999999874322 121110 00 00 0 0000000
Q ss_pred ---------------------cccCCCCCCCCCCC--CC--------CHHHHHHHHHHHHHHh-CC-ccccccEEEEEEE
Q 035902 59 ---------------------CELPHMPFPSRTPT--FV--------PRISFINYVDNYVSQM-GI-NPRYHRSVESASY 105 (381)
Q Consensus 59 ---------------------~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~-~~-~~~~~~~v~~i~~ 105 (381)
+.....++...... .+ ....+.+.+.+.+++. ++ +++.++.|+++..
T Consensus 102 ~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~ 181 (643)
T 1jnr_A 102 GLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLK 181 (643)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEE
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEE
Confidence 00001111100000 00 1234556666667766 99 8999999999987
Q ss_pred eCC--CCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 106 DEN--AKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 106 ~~~--~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
++. .....|...+...++...+.++.||+|||...
T Consensus 182 ~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~ 218 (643)
T 1jnr_A 182 DNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT 218 (643)
T ss_dssp CTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred cCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence 642 02222333222223345799999999999884
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=89.39 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=81.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++++|||+|+.|+.+|..|++. |.+|+++++.+.+. +. ....++.+.
T Consensus 160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l-------------------------------~~-~~~~~~~~~ 207 (472)
T 3iwa_A 160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIM-------------------------------PG-FTSKSLSQM 207 (472)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSS-------------------------------TT-TSCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccc-------------------------------cc-ccCHHHHHH
Confidence 6899999999999999999999 99999999876321 00 012467788
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+.+.+++.|++++++++|.++..++ +...+.+.++ +++.+|.||+|+|..|+.
T Consensus 208 l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~v~~~~g-----~~i~aD~Vv~a~G~~p~~ 260 (472)
T 3iwa_A 208 LRHDLEKNDVVVHTGEKVVRLEGEN--GKVARVITDK-----RTLDADLVILAAGVSPNT 260 (472)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEESS-----CEEECSEEEECSCEEECC
T ss_pred HHHHHHhcCCEEEeCCEEEEEEccC--CeEEEEEeCC-----CEEEcCEEEECCCCCcCH
Confidence 8888888999999999999998754 5555777766 579999999999999764
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-07 Score=90.32 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=81.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
++++|||||+.|+.+|..|++. |.+|+++++.+.+. +. -..++.
T Consensus 192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~ 238 (495)
T 2wpf_A 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-------------------------------RG--FDETIR 238 (495)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC-------------------------------TT--SCHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc-------------------------------cc--cCHHHH
Confidence 6799999999999999999999 99999999876321 00 124677
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+.+++.|+++++++.|.++..++ ++...|.+.++ +.+.+|.||+|+|..|+..
T Consensus 239 ~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~G-----~~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 239 EEVTKQLTANGIEIMTNENPAKVSLNT-DGSKHVTFESG-----KTLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEECT-TSCEEEEETTS-----CEEEESEEEECSCEEECCG
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcC-CceEEEEECCC-----cEEEcCEEEECCCCccccc
Confidence 788888888899999999999998754 23355777665 4799999999999997764
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.64 E-value=5e-08 Score=95.03 Aligned_cols=65 Identities=17% Similarity=0.012 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHh--CCccccccEEEEEEEeCC--CCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQM--GINPRYHRSVESASYDEN--AKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~--~~~~~~~~~v~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+...+.+.+++. +++++.++.++++..+++ .....+...+...++...+.++.||+|||...
T Consensus 165 G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g 233 (662)
T 3gyx_A 165 GESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV 233 (662)
T ss_dssp ETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence 345666677777776 899999999988877652 12222433332233456799999999999874
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.9e-08 Score=90.77 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=78.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~ 232 (480)
T 3cgb_A 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT---------------------------------IYDGDMAEY 232 (480)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS---------------------------------SSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh---------------------------------cCCHHHHHH
Confidence 36899999999999999999999999999998763210 012467778
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.+++.|+++++++.|.++..++ +.+.+.++ + .++.+|.||+|+|..|+.+
T Consensus 233 l~~~l~~~Gv~i~~~~~v~~i~~~~--~v~~v~~~-~-----~~i~~D~vi~a~G~~p~~~ 285 (480)
T 3cgb_A 233 IYKEADKHHIEILTNENVKAFKGNE--RVEAVETD-K-----GTYKADLVLVSVGVKPNTD 285 (480)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEESS--BEEEEEET-T-----EEEECSEEEECSCEEESCG
T ss_pred HHHHHHHcCcEEEcCCEEEEEEcCC--cEEEEEEC-C-----CEEEcCEEEECcCCCcChH
Confidence 8888888999999999999997642 33334443 2 4799999999999997654
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=4.1e-08 Score=89.28 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=76.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. + -..++.+++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~---~~~~~~~~l 189 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-------------------------------G---LDEELSNMI 189 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-------------------------------T---CCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec-------------------------------c---CCHHHHHHH
Confidence 679999999999999999999999999999876321 1 124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|++++++++|.+++ . .. +.+.++ + +.+|.||+|+|..|+.
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~--~--~~--v~~~~g-----~-i~~D~vi~a~G~~p~~ 236 (367)
T 1xhc_A 190 KDMLEETGVKFFLNSELLEAN--E--EG--VLTNSG-----F-IEGKVKICAIGIVPNV 236 (367)
T ss_dssp HHHHHHTTEEEECSCCEEEEC--S--SE--EEETTE-----E-EECSCEEEECCEEECC
T ss_pred HHHHHHCCCEEEcCCEEEEEE--e--eE--EEECCC-----E-EEcCEEEECcCCCcCH
Confidence 888888899999999998886 2 23 666654 5 9999999999999775
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-07 Score=86.52 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=80.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .-..++.+.+
T Consensus 148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~-~~d~~~~~~l 195 (452)
T 3oc4_A 148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL-------------------------------PK-YFDKEMVAEV 195 (452)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------TT-TCCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc-------------------------------cc-cCCHHHHHHH
Confidence 679999999999999999999999999999886321 00 0124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
.+.+++.|+++++++.|.++...+ +...|.+++ .++.+|.||+|+|..|+...+
T Consensus 196 ~~~l~~~GV~i~~~~~v~~i~~~~--~~v~v~~~~------g~i~aD~Vv~A~G~~p~~~~l 249 (452)
T 3oc4_A 196 QKSLEKQAVIFHFEETVLGIEETA--NGIVLETSE------QEISCDSGIFALNLHPQLAYL 249 (452)
T ss_dssp HHHHHTTTEEEEETCCEEEEEECS--SCEEEEESS------CEEEESEEEECSCCBCCCSSC
T ss_pred HHHHHHcCCEEEeCCEEEEEEccC--CeEEEEECC------CEEEeCEEEECcCCCCChHHH
Confidence 888888899999999999998654 444455543 269999999999999876543
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-07 Score=88.09 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~l 232 (479)
T 2hqm_A 186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-------------------------------RK--FDECIQNTI 232 (479)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 10 124677778
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|++++++++|.++..+++.....+.+.++ + +.+.+|.||+|+|..|+.
T Consensus 233 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G---~-~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 233 TDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDS---K-SIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp HHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTS---C-EEEEESEEEECSCEEECC
T ss_pred HHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCC---c-EEEEcCEEEECCCCCCcc
Confidence 888888899999999999998754221345666543 1 579999999999999876
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.63 E-value=6e-09 Score=95.49 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=74.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCC---CCC--cCCCCCC----------C-ee----eecCCccccc
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCS---ASL--WKKRAYD----------R-MK----LHLAKQFCEL 61 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~---g~~--~~~~~~~----------~-~~----~~~~~~~~~~ 61 (381)
+||+|||||++|+++|+.|++. |.+|+|+|+.+.. |.. +...... . +. ......+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH- 79 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-
Confidence 4799999999999999999999 9999999998765 221 0000000 0 00 000000000
Q ss_pred CCCCCCC--CCC-CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 62 PHMPFPS--RTP-TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 62 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
....... ..+ ....+.++.+.+.+.+++.+++++++++|+++... ..+++|.||.|+|.
T Consensus 80 ~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~------------------~~~~ad~vV~AdG~ 141 (381)
T 3c4a_A 80 HNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL------------------PLADYDLVVLANGV 141 (381)
T ss_dssp SSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC------------------CGGGCSEEEECCGG
T ss_pred CCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc------------------ccccCCEEEECCCC
Confidence 0000000 001 13457889999999998889999999888655321 12568999999999
Q ss_pred CCC
Q 035902 139 NGL 141 (381)
Q Consensus 139 ~~~ 141 (381)
.+.
T Consensus 142 ~S~ 144 (381)
T 3c4a_A 142 NHK 144 (381)
T ss_dssp GGG
T ss_pred Cch
Confidence 865
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=82.83 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=78.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ....+.+.+
T Consensus 146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~~~~~~l 190 (320)
T 1trb_A 146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKRL 190 (320)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------CCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc-----------------------------------cCHHHHHHH
Confidence 679999999999999999999999999999875221 123555666
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCC-CceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTAL-DAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~-~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.++++++++++.++..++ ++...|.+.+... ++...+.+|.||+|+|..|...
T Consensus 191 ~~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 250 (320)
T 1trb_A 191 MDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 250 (320)
T ss_dssp HHHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCG
T ss_pred HHhcccCCeEEEcCceeEEEEcCC-CceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChH
Confidence 667777899999999999998654 2333366654221 2336799999999999987654
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=87.94 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=78.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ....++.+.+
T Consensus 150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~-~~~~~~~~~l 197 (452)
T 2cdu_A 150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVL-------------------------------YK-YFDKEFTDIL 197 (452)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTT-------------------------------TT-TSCHHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchh-------------------------------hh-hhhhhHHHHH
Confidence 679999999999999999999999999999876321 00 0124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|++++++++|.++..++ +... +.+ ++ .++.+|.||+|+|..|+..
T Consensus 198 ~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~~v~~-~g-----~~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 198 AKDYEAHGVNLVLGSKVAAFEEVD--DEIITKTL-DG-----KEIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp HHHHHHTTCEEEESSCEEEEEEET--TEEEEEET-TS-----CEEEESEEEECCCEEECCG
T ss_pred HHHHHHCCCEEEcCCeeEEEEcCC--CeEEEEEe-CC-----CEEECCEEEECcCCCCCHH
Confidence 888888999999999999998643 4332 332 33 5799999999999997754
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-07 Score=88.51 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=82.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..+++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 238 (484)
T 3o0h_A 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-------------------------------RN--FDYDLRQLL 238 (484)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc-------------------------------cc--cCHHHHHHH
Confidence 679999999999999999999999999999876321 00 124677778
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|+++++++.|.++..++ +.+.+.+.++ +.+.+|.||+|+|..|....
T Consensus 239 ~~~l~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~g-----~~i~aD~Vi~A~G~~p~~~~ 292 (484)
T 3o0h_A 239 NDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTNG-----QTICADRVMLATGRVPNTTG 292 (484)
T ss_dssp HHHHHHHTCEEESSCCEEEEEECS--SSEEEEETTS-----CEEEESEEEECCCEEECCTT
T ss_pred HHHHHHCCCEEEeCCEEEEEEeeC--CEEEEEECCC-----cEEEcCEEEEeeCCCcCCCC
Confidence 888888899999999999998765 4456777765 57999999999999977654
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.8e-07 Score=86.99 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=81.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.+
T Consensus 181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~l 227 (476)
T 3lad_A 181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------------------P--AVDEQVAKEA 227 (476)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------T--TSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------c--ccCHHHHHHH
Confidence 679999999999999999999999999999876321 1 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.++..++ +...+.+.++. +...+.+|.||+|+|..|+..
T Consensus 228 ~~~l~~~Gv~v~~~~~v~~i~~~~--~~~~v~~~~~~--g~~~~~~D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 228 QKILTKQGLKILLGARVTGTEVKN--KQVTVKFVDAE--GEKSQAFDKLIVAVGRRPVTT 283 (476)
T ss_dssp HHHHHHTTEEEEETCEEEEEEECS--SCEEEEEESSS--EEEEEEESEEEECSCEEECCT
T ss_pred HHHHHhCCCEEEECCEEEEEEEcC--CEEEEEEEeCC--CcEEEECCEEEEeeCCcccCC
Confidence 888888899999999999998765 44556666432 135799999999999997764
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=89.52 Aligned_cols=100 Identities=16% Similarity=0.251 Sum_probs=77.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ....++.+.+
T Consensus 195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~-~~~~~~~~~l 242 (490)
T 2bc0_A 195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL-------------------------------AG-YYDRDLTDLM 242 (490)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------TT-TSCHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchh-------------------------------hh-HHHHHHHHHH
Confidence 689999999999999999999999999999886321 00 0124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|++++++++|.++..++ +...+.+ ++ .++.+|.||+|+|..|+.+
T Consensus 243 ~~~l~~~GV~i~~~~~v~~i~~~~--~v~~v~~-~g-----~~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 243 AKNMEEHGIQLAFGETVKEVAGNG--KVEKIIT-DK-----NEYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp HHHHHTTTCEEEETCCEEEEECSS--SCCEEEE-SS-----CEEECSEEEECCCEEECCG
T ss_pred HHHHHhCCeEEEeCCEEEEEEcCC--cEEEEEE-CC-----cEEECCEEEECCCCCcChH
Confidence 888888899999999999997532 2222444 33 5799999999999997754
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-07 Score=82.39 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=78.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|..|+.+|..|++.|.+|+++++.+.+. ......+.+
T Consensus 153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-----------------------------------~~~~~~~~l 197 (335)
T 2zbw_A 153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-----------------------------------AHEASVKEL 197 (335)
T ss_dssp CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-----------------------------------SCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-----------------------------------ccHHHHHHH
Confidence 689999999999999999999999999999875221 113455666
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++.+++.+++++.++.+.++..++ +...|.+.+...++...+.+|.||+|+|..|..+
T Consensus 198 ~~~l~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 255 (335)
T 2zbw_A 198 MKAHEEGRLEVLTPYELRRVEGDE--RVRWAVVFHNQTQEELALEVDAVLILAGYITKLG 255 (335)
T ss_dssp HHHHHTTSSEEETTEEEEEEEESS--SEEEEEEEETTTCCEEEEECSEEEECCCEEEECG
T ss_pred HhccccCCeEEecCCcceeEccCC--CeeEEEEEECCCCceEEEecCEEEEeecCCCCch
Confidence 777777899999999999998742 4334666532222346799999999999997653
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.7e-07 Score=84.41 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=79.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+++++...+. . -..++.+.+
T Consensus 211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~--------------------------------~--~d~~~~~~~ 256 (519)
T 3qfa_A 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------------------------------G--FDQDMANKI 256 (519)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST--------------------------------T--SCHHHHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc--------------------------------c--CCHHHHHHH
Confidence 579999999999999999999999999999753110 0 124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCC--CCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDEN--AKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++.++.+..+....+ .+...+........+...+.+|.||+|+|..|+...
T Consensus 257 ~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~ 319 (519)
T 3qfa_A 257 GEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRK 319 (519)
T ss_dssp HHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSS
T ss_pred HHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCC
Confidence 8888889999999988888765432 134445544322223356889999999999977653
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-07 Score=89.26 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=80.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.+
T Consensus 152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~l 198 (565)
T 3ntd_A 152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM-------------------------------T--PVDREMAGFA 198 (565)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC-------------------------------T--TSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc-------------------------------h--hcCHHHHHHH
Confidence 589999999999999999999999999999876321 1 1124677778
Q ss_pred HHHHHHhCCccccccEEEEEEEeC-----------------CCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDE-----------------NAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~-----------------~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.++.... ..+...+...++ +.+.+|.||+|+|..|+..
T Consensus 199 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~~p~~~ 270 (565)
T 3ntd_A 199 HQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNG-----ELLETDLLIMAIGVRPETQ 270 (565)
T ss_dssp HHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTS-----CEEEESEEEECSCEEECCH
T ss_pred HHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCC-----CEEEcCEEEECcCCccchH
Confidence 888888899999999999998630 124555666554 5799999999999997643
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=87.46 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=78.4
Q ss_pred ccEEEECCCHHHHHHHHHHHh----CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNN----LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISF 79 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~----~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (381)
++|+|||||+.|+.+|..|++ .|.+|+++++.+... +... ..++
T Consensus 181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~-------------------------------~~~l-~~~~ 228 (493)
T 1m6i_A 181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-------------------------------GKIL-PEYL 228 (493)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-------------------------------TTTS-CHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc-------------------------------cccC-CHHH
Confidence 679999999999999999987 478899998765211 0001 1467
Q ss_pred HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 80 INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+.+.+++.|+++++++.|.++..++ +...|.+.++ +.+.+|.||+|+|..|+..
T Consensus 229 ~~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~~v~l~dG-----~~i~aD~Vv~a~G~~pn~~ 285 (493)
T 1m6i_A 229 SNWTMEKVRREGVKVMPNAIVQSVGVSS--GKLLIKLKDG-----RKVETDHIVAAVGLEPNVE 285 (493)
T ss_dssp HHHHHHHHHTTTCEEECSCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECCCEEECCT
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEecC--CeEEEEECCC-----CEEECCEEEECCCCCccHH
Confidence 7777888888899999999999998654 4445777665 5799999999999997754
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-07 Score=88.84 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..+++.|.+|+|+++.+.+... ...++.+.+
T Consensus 148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~---------------------------------~d~~~~~~~ 194 (437)
T 4eqs_A 148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQPI 194 (437)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT---------------------------------SCGGGGHHH
T ss_pred cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc---------------------------------ccchhHHHH
Confidence 57999999999999999999999999999988643210 012455667
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++++++|.+++. .. +.+.++ +.+.+|.|++|+|..|+..
T Consensus 195 ~~~l~~~gV~i~~~~~v~~~~~----~~--v~~~~g-----~~~~~D~vl~a~G~~Pn~~ 243 (437)
T 4eqs_A 195 LDELDKREIPYRLNEEINAING----NE--ITFKSG-----KVEHYDMIIEGVGTHPNSK 243 (437)
T ss_dssp HHHHHHTTCCEEESCCEEEEET----TE--EEETTS-----CEEECSEEEECCCEEESCG
T ss_pred HHHhhccceEEEeccEEEEecC----Ce--eeecCC-----eEEeeeeEEEEeceecCcH
Confidence 7778888999999999988753 22 777776 6799999999999987654
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-07 Score=85.78 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=80.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..+++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-------------------------------~~--~~~~~~~~l 217 (463)
T 4dna_A 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-------------------------------SR--FDQDMRRGL 217 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 679999999999999999999999999999876321 00 124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEE-EeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIV-AKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~-~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
.+.+++.|++++.++.|.++..++ ++...|. +.++ + +.+|.||+|+|..|+...
T Consensus 218 ~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~v~~~~~g-----~-i~aD~Vv~a~G~~p~~~~ 272 (463)
T 4dna_A 218 HAAMEEKGIRILCEDIIQSVSADA-DGRRVATTMKHG-----E-IVADQVMLALGRMPNTNG 272 (463)
T ss_dssp HHHHHHTTCEEECSCCEEEEEECT-TSCEEEEESSSC-----E-EEESEEEECSCEEESCTT
T ss_pred HHHHHHCCCEEECCCEEEEEEEcC-CCEEEEEEcCCC-----e-EEeCEEEEeeCcccCCCC
Confidence 888888999999999999998764 2334566 5555 5 999999999999977653
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-07 Score=91.12 Aligned_cols=38 Identities=39% Similarity=0.654 Sum_probs=35.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
.+||+|||||++|+++|+.|++.|.+|+|+|+.+.+||
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg 373 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG 373 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence 47999999999999999999999999999999887776
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.50 E-value=8e-08 Score=91.31 Aligned_cols=38 Identities=32% Similarity=0.550 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
=++|+|||||++||+||+.|+++|++|+|+|+++.+||
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG 38 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGG 38 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-----
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCC
Confidence 06799999999999999999999999999999999988
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-07 Score=87.31 Aligned_cols=103 Identities=25% Similarity=0.327 Sum_probs=71.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
|+|+|||+|+.|+.+|..|.+++ .+|+++.+++.+........ .+...+ ....
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~---v~~g~~--------------------~~~~-- 57 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPH---LAMGWR--------------------KFED-- 57 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHH---HHHTCS--------------------CGGG--
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHH---HhcCCC--------------------CHHH--
Confidence 78999999999999999999876 58999999884322111110 000100 0000
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--eEEEcCCcEeeccEEEEecCCCCC
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--EVEFENGKIEEFEAIIFATGYKST 315 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~ 315 (381)
+...+.+.+++.+++++.+ ++.++.+ .|.+++|+++++|.+|+|||.++.
T Consensus 58 ------------------i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 58 ------------------ISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp ------------------SEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE
T ss_pred ------------------hhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc
Confidence 0111234456678999998 9999865 689999999999999999998754
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-07 Score=88.57 Aligned_cols=97 Identities=13% Similarity=0.209 Sum_probs=79.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~l 234 (588)
T 3ics_A 188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM-------------------------------PP--IDYEMAAYV 234 (588)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc-------------------------------cc--CCHHHHHHH
Confidence 679999999999999999999999999999876321 11 124677788
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|+++++++.|.++..+. +. |.+.++ +.+.+|.||+|+|..|+.
T Consensus 235 ~~~l~~~GV~i~~~~~v~~i~~~~--~~--v~~~~g-----~~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 235 HEHMKNHDVELVFEDGVDALEENG--AV--VRLKSG-----SVIQTDMLILAIGVQPES 284 (588)
T ss_dssp HHHHHHTTCEEECSCCEEEEEGGG--TE--EEETTS-----CEEECSEEEECSCEEECC
T ss_pred HHHHHHcCCEEEECCeEEEEecCC--CE--EEECCC-----CEEEcCEEEEccCCCCCh
Confidence 888888999999999999997654 33 666665 579999999999998765
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-07 Score=89.35 Aligned_cols=39 Identities=31% Similarity=0.602 Sum_probs=36.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCCCc
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSASLW 42 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~~~ 42 (381)
+||+|||||++|++||+.|+++ |.+|+|+|+++.+||.-
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~ 50 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA 50 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGG
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCe
Confidence 7999999999999999999985 99999999999999953
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.2e-07 Score=81.04 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=74.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .+ + +.......+.+.+
T Consensus 167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~---------------------~~----d-~~~~~~~~~~~~l 220 (369)
T 3d1c_A 167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP---------------------DA----D-PSVRLSPYTRQRL 220 (369)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------------------CTTSCCHHHHHHH
T ss_pred CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC---------------------CC----C-CCccCCHHHHHHH
Confidence 58999999999999999999999999999987632100 00 0 0111123556677
Q ss_pred HHHHHHhC-CccccccEEEEEEEeCCCCeEEEEEeecCCCceEEE-EeCEEEEccCCCCCC
Q 035902 84 DNYVSQMG-INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEY-VARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vIlAtG~~~~~ 142 (381)
.+.+++.+ ++++.++.|..+..++ +.+.+.+.++ +.+ .+|.||+|+|..|..
T Consensus 221 ~~~l~~~g~v~~~~~~~v~~i~~~~--~~~~v~~~~g-----~~~~~~d~vi~a~G~~~~~ 274 (369)
T 3d1c_A 221 GNVIKQGARIEMNVHYTVKDIDFNN--GQYHISFDSG-----QSVHTPHEPILATGFDATK 274 (369)
T ss_dssp HHHHHTTCCEEEECSCCEEEEEEET--TEEEEEESSS-----CCEEESSCCEECCCBCGGG
T ss_pred HHHHhhCCcEEEecCcEEEEEEecC--CceEEEecCC-----eEeccCCceEEeeccCCcc
Confidence 77777776 9999999999987654 4556777665 334 469999999999765
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=79.02 Aligned_cols=103 Identities=16% Similarity=0.057 Sum_probs=75.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||+|+.|+.+|..|++.+.+|+++++.+.+. ....+.+.+
T Consensus 164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-----------------------------------~~~~~~~~l 208 (360)
T 3ab1_A 164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ-----------------------------------GHGKTAHEV 208 (360)
T ss_dssp CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS-----------------------------------SCSHHHHSS
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC-----------------------------------CCHHHHHHH
Confidence 579999999999999999999999999999876321 001344555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+..++.++++++++++.++..++ ++...|.+.. ..++...+.+|.||+|+|..|...
T Consensus 209 ~~~~~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~-~~g~~~~i~~D~vi~a~G~~p~~~ 266 (360)
T 3ab1_A 209 ERARANGTIDVYLETEVASIEESN-GVLTRVHLRS-SDGSKWTVEADRLLILIGFKSNLG 266 (360)
T ss_dssp HHHHHHTSEEEESSEEEEEEEEET-TEEEEEEEEE-TTCCEEEEECSEEEECCCBCCSCG
T ss_pred HHHhhcCceEEEcCcCHHHhccCC-CceEEEEEEe-cCCCeEEEeCCEEEECCCCCCCHH
Confidence 666677789999999999998764 1212355541 122346799999999999887653
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-06 Score=82.37 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=36.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++||+|||||++|+++|+.|++.|++|+|||+....++.
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~ 84 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGL 84 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCc
Confidence 589999999999999999999999999999998877753
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.5e-07 Score=78.83 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. .. ..+ .
T Consensus 153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------------------------------~~-~~~---~ 194 (325)
T 2q7v_A 153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR----------------------------------AN-KVA---Q 194 (325)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC----------------------------------SC-HHH---H
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC----------------------------------cc-hHH---H
Confidence 579999999999999999999999999999875221 00 122 2
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.++.++++++++++.++..++ +...|.+.+...++...+.+|.||+|+|..|+..
T Consensus 195 ~~l~~~~gv~i~~~~~v~~i~~~~--~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 252 (325)
T 2q7v_A 195 ARAFANPKMKFIWDTAVEEIQGAD--SVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTA 252 (325)
T ss_dssp HHHHTCTTEEEECSEEEEEEEESS--SEEEEEEEETTTCCEEEEECSEEEECSCEEESCG
T ss_pred HHHHhcCCceEecCCceEEEccCC--cEEEEEEEECCCCcEEEEEcCEEEEccCCCCChH
Confidence 223334589999999999998643 3334666542223345799999999999987654
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=78.50 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=74.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..|.+.+.+|+++++...+. .. ..+
T Consensus 174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~-----------------------------------~~----~~~ 214 (338)
T 3itj_A 174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLR-----------------------------------AS----TIM 214 (338)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------SC----HHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccC-----------------------------------CC----HHH
Confidence 679999999999999999999999999999876321 01 122
Q ss_pred HHHH-HHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYV-SQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+ ++.+++++.++.+.++..++ .+...|.+.+...++...+.+|.||+|+|..|...
T Consensus 215 ~~~l~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 274 (338)
T 3itj_A 215 QKRAEKNEKIEILYNTVALEAKGDG-KLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATK 274 (338)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTTEEEEEECSEEEECSCEEECCG
T ss_pred HHHHHhcCCeEEeecceeEEEEccc-CcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChh
Confidence 2333 33499999999999998765 23334777764334457899999999999987654
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=75.90 Aligned_cols=100 Identities=11% Similarity=0.083 Sum_probs=73.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. .. ..+
T Consensus 145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~----~~~ 185 (310)
T 1fl2_A 145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-----------------------------------AD----QVL 185 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-----------------------------------SC----HHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC-----------------------------------cc----HHH
Confidence 679999999999999999999999999999876220 00 122
Q ss_pred HHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+.+ .++++++++++.++..++ .....+.+.++..++...+.+|.||+|+|..|+..
T Consensus 186 ~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 245 (310)
T 1fl2_A 186 QDKLRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTN 245 (310)
T ss_dssp HHHHHTCTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCG
T ss_pred HHHHhhCCCeEEecCCceEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCch
Confidence 333444 589999999999998653 22224666664334456799999999999987653
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-07 Score=84.18 Aligned_cols=41 Identities=37% Similarity=0.542 Sum_probs=37.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWK 43 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~ 43 (381)
++||+|||||++|++||+.|++.| .+|+|+|+++.+||...
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~ 47 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCH 47 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCccc
Confidence 589999999999999999999999 89999999999988543
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-07 Score=83.52 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYG 245 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (381)
.+|+|+|||+|+.|+.+|..|.+.+ .+|++|.+++.+........+ +.... ....
T Consensus 1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v---~~g~~--------------------~~~~ 57 (401)
T 3vrd_B 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEV---IGGDR--------------------ELAS 57 (401)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHH---HHTSS--------------------CGGG
T ss_pred CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHH---hcCCC--------------------CHHH
Confidence 3799999999999999999998876 489999988732221111100 00000 0000
Q ss_pred CCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcc
Q 035902 246 LERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
+ . ...+.+.+.+++++.+ ++.++.+ .+.+.+|+++++|.+|+|||.+++.+
T Consensus 58 ~--------------------~-~~~~~~~~~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~ 111 (401)
T 3vrd_B 58 L--------------------R-VGYDGLRAHGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYD 111 (401)
T ss_dssp G--------------------E-ECSHHHHHTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECGG
T ss_pred H--------------------h-hCHHHHHHCCCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccccC
Confidence 0 0 0123345578999988 9999875 68889999999999999999998864
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=81.94 Aligned_cols=105 Identities=15% Similarity=0.324 Sum_probs=74.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhh---CCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSS---CGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~---~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
++++|||+|+.|+.+|..|++ .+.+|+++.+.+......... ........
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~---~~~~g~~~------------------------ 57 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNP---WVGVGWKE------------------------ 57 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHH---HHHHTSSC------------------------
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCcc---ccccCccC------------------------
Confidence 689999999999999999999 788999999988322111100 00000000
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcc
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
...+...+.+.+++.+++++.+ ++.++.+ .+.+++++++.+|.+|+|||.+|+.+
T Consensus 58 ----------------~~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~ 115 (437)
T 3sx6_A 58 ----------------RDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFE 115 (437)
T ss_dssp ----------------HHHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGG
T ss_pred ----------------HHHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcc
Confidence 0011112345566778888877 8888875 68888999999999999999998864
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=81.74 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=75.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+.. . ....++.+.+
T Consensus 149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~l 196 (449)
T 3kd9_A 149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR-------------------------------R-SFDKEVTDIL 196 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------T-TSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch-------------------------------h-hcCHHHHHHH
Confidence 5899999999999999999999999999998863211 0 0124677777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++. +++++++.+.++..++ +. .....++ .++.+|.||+|+|..|+.
T Consensus 197 ~~~l~~~-v~i~~~~~v~~i~~~~--~v-~~v~~~g-----~~i~~D~Vv~a~G~~p~~ 246 (449)
T 3kd9_A 197 EEKLKKH-VNLRLQEITMKIEGEE--RV-EKVVTDA-----GEYKAELVILATGIKPNI 246 (449)
T ss_dssp HHHHTTT-SEEEESCCEEEEECSS--SC-CEEEETT-----EEEECSEEEECSCEEECC
T ss_pred HHHHHhC-cEEEeCCeEEEEeccC--cE-EEEEeCC-----CEEECCEEEEeeCCccCH
Confidence 7777777 8999999999887543 22 1223343 679999999999999765
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-06 Score=76.84 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=74.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. ... .++
T Consensus 155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------------~~~---~~~ 196 (323)
T 3f8d_A 155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK-----------------------------------AQP---IYV 196 (323)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC-----------------------------------SCH---HHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC-----------------------------------cCH---HHH
Confidence 679999999999999999999999999999876321 011 223
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
+++.++.++++++++.+.++..++ +...+.+.+...++...+.+|.||+|+|..|..
T Consensus 197 ~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~ 253 (323)
T 3f8d_A 197 ETVKKKPNVEFVLNSVVKEIKGDK--VVKQVVVENLKTGEIKELNVNGVFIEIGFDPPT 253 (323)
T ss_dssp HHHHTCTTEEEECSEEEEEEEESS--SEEEEEEEETTTCCEEEEECSEEEECCCEECCH
T ss_pred HHHHhCCCcEEEeCCEEEEEeccC--ceeEEEEEECCCCceEEEEcCEEEEEECCCCCh
Confidence 334445589999999999998753 444577776333344579999999999998764
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=76.99 Aligned_cols=101 Identities=18% Similarity=0.125 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ....+.
T Consensus 144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~~~~--- 185 (311)
T 2q0l_A 144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR-----------------------------------CAPITL--- 185 (311)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC-----------------------------------SCHHHH---
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC-----------------------------------CCHHHH---
Confidence 689999999999999999999999999999875221 001222
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
+.+.++.++++++++.+.++..++ ++...+.+.+...++...+.+|.||+|+|..|+.+
T Consensus 186 ~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 244 (311)
T 2q0l_A 186 EHAKNNDKIEFLTPYVVEEIKGDA-SGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNA 244 (311)
T ss_dssp HHHHTCTTEEEETTEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECSCEEECCG
T ss_pred HHHhhCCCeEEEeCCEEEEEECCC-CcEeEEEEEecCCCceEEEecCEEEEEecCccChh
Confidence 222234689999999999998763 12223566532223345799999999999997654
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-06 Score=75.68 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||+|+.|+.+|..|++.+.+|+++++.+.+. .....
T Consensus 155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~-----------------------------------~~~~~---- 195 (332)
T 3lzw_A 155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR-----------------------------------AHEHS---- 195 (332)
T ss_dssp CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS-----------------------------------SCHHH----
T ss_pred CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC-----------------------------------ccHHH----
Confidence 679999999999999999999999999999875321 00111
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.+++++.++.+.++..++ +...+.+.++..++...+.+|.||+|+|..|..+
T Consensus 196 ~~~l~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 253 (332)
T 3lzw_A 196 VENLHASKVNVLTPFVPAELIGED--KIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLG 253 (332)
T ss_dssp HHHHHHSSCEEETTEEEEEEECSS--SCCEEEEEETTSCCEEEEECSEEEECCCEECCCG
T ss_pred HHHHhcCCeEEEeCceeeEEecCC--ceEEEEEEecCCCceEEEECCEEEEeeccCCCch
Confidence 122466799999999999998755 3344777775445557899999999999988654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-06 Score=75.44 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. ....+
T Consensus 156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-----------------------------------~~~~l---- 196 (319)
T 3cty_A 156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-----------------------------------CENAY---- 196 (319)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-----------------------------------SCHHH----
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-----------------------------------CCHHH----
Confidence 579999999999999999999999999999875211 01222
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+.+.++++++++++.++..++ ...-.+.+.+...++...+.+|.||+|+|..|+..
T Consensus 197 ~~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 255 (319)
T 3cty_A 197 VQEIKKRNIPYIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTS 255 (319)
T ss_dssp HHHHHHTTCCEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEEECCCEEECCG
T ss_pred HHHHhcCCcEEEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEEEeeCCccChH
Confidence 333446799999999999998754 11223555532222345799999999999987654
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-07 Score=87.41 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=37.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCc
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLW 42 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~ 42 (381)
+.+||+|||||++|++||+.|++.| .+|+|+|+++.+||..
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~ 48 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL 48 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence 3589999999999999999999999 9999999999999843
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.6e-07 Score=80.70 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
...+++|||+|+.|+.+|..|...+.+|+++.+.+.. |.....+...+.... ...
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~--~y~~~~l~~~l~g~~--------------------~~~--- 62 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL--PYYRPRLNEIIAKNK--------------------SID--- 62 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC--CBCGGGHHHHHHSCC--------------------CGG---
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC--CcccChhhHHHcCCC--------------------CHH---
Confidence 4578999999999999999997778899999988732 111111111111110 000
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcc
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
.+.....+.+++.+++++.+ |+.++.+ .+.+++|+++.+|.+|+|||.+|..+
T Consensus 63 -----------------~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 63 -----------------DILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp -----------------GTBSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCC
T ss_pred -----------------HccCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCC
Confidence 00111244456678998877 8888864 68889999999999999999988764
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=81.74 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=73.1
Q ss_pred cEEEECCCHHHHHHHHHHHhC--------------CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNL--------------SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRT 70 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~--------------g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (381)
.++|||||+.|+.+|..|++. ..+|+|+|..+.+-
T Consensus 219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------------------------- 267 (502)
T 4g6h_A 219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------------------------- 267 (502)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS-------------------------------
T ss_pred ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc-------------------------------
Confidence 699999999999999988753 35899999887432
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe--ecCCCceEEEEeCEEEEccCCCCC
Q 035902 71 PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK--NTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+.+ ..++.+++++.+++.|+++++++.|.+++.+ ...+... ++ ....+++.||.||.|+|..|+
T Consensus 268 ~~~--~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~----~~~~~~~~~dg-~~~~~~i~ad~viwa~Gv~~~ 333 (502)
T 4g6h_A 268 NMF--EKKLSSYAQSHLENTSIKVHLRTAVAKVEEK----QLLAKTKHEDG-KITEETIPYGTLIWATGNKAR 333 (502)
T ss_dssp TTS--CHHHHHHHHHHHHHTTCEEETTEEEEEECSS----EEEEEEECTTS-CEEEEEEECSEEEECCCEECC
T ss_pred cCC--CHHHHHHHHHHHHhcceeeecCceEEEEeCC----ceEEEEEecCc-ccceeeeccCEEEEccCCcCC
Confidence 111 2578888899999999999999999988643 2212222 21 112357999999999998865
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4e-07 Score=83.26 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=40.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR 45 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~ 45 (381)
|+++||+|||||++|+++|+.|++.|.+|+|+|+++.+||.+...
T Consensus 1 m~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~ 45 (384)
T 2bi7_A 1 MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA 45 (384)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEE
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccc
Confidence 777899999999999999999999999999999999999976543
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=76.82 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|..|+.+|..|++.|.+|+++++.+.+. . ...+.
T Consensus 160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~----------------------------------~-~~~~~--- 201 (333)
T 1vdc_A 160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR----------------------------------A-SKIMQ--- 201 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC----------------------------------S-CHHHH---
T ss_pred CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC----------------------------------c-cHHHH---
Confidence 679999999999999999999999999999876321 0 11111
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCC-CeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENA-KAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++..++.++++++++++.++..+++. +...+.+.+...++...+.+|.||+|+|..|...
T Consensus 202 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 262 (333)
T 1vdc_A 202 QRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATK 262 (333)
T ss_dssp HHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCG
T ss_pred HHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchH
Confidence 23345578999999999999865411 2222566543233446799999999999997654
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.5e-07 Score=84.27 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=39.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
++||+|||||++|++||..|++.|.+|+|+|+++.+||.+..
T Consensus 11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 489999999999999999999999999999999999996544
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.1e-07 Score=85.12 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=38.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASL 41 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~ 41 (381)
|+.+||+|||||++|+++|+.|++.| .+|+|+|+++.+||.
T Consensus 2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~ 44 (475)
T 3lov_A 2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGK 44 (475)
T ss_dssp CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTT
T ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCce
Confidence 76799999999999999999999999 999999999888774
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.3e-07 Score=84.44 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=37.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
++||+|||||++|++||+.|++.|.+|+|+|+++.+||..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~ 44 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT 44 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence 5899999999999999999999999999999999888754
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.1e-07 Score=82.51 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=39.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCCCcCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSASLWKK 44 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~~~~~ 44 (381)
++||+|||||++|+++|+.|++. |.+|+|+|+++.+||.+..
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~ 49 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS 49 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence 58999999999999999999999 9999999999999996554
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=79.78 Aligned_cols=103 Identities=19% Similarity=0.309 Sum_probs=74.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++++.+.+. +.+ ...++.+.+
T Consensus 173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~~-~d~~~~~~l 220 (466)
T 3l8k_A 173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL-------------------------------ITL-EDQDIVNTL 220 (466)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TTS-CCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC-------------------------------CCC-CCHHHHHHH
Confidence 679999999999999999999999999999876321 100 023555555
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++.++ +++++++.+.++..+++ +...+.+.+ ..++...+.+|.||+|+|..|+..
T Consensus 221 ~~~l~---v~i~~~~~v~~i~~~~~-~~v~v~~~~-~~G~~~~i~~D~vi~a~G~~p~~~ 275 (466)
T 3l8k_A 221 LSILK---LNIKFNSPVTEVKKIKD-DEYEVIYST-KDGSKKSIFTNSVVLAAGRRPVIP 275 (466)
T ss_dssp HHHHC---CCEECSCCEEEEEEEET-TEEEEEECC-TTSCCEEEEESCEEECCCEEECCC
T ss_pred HhcCE---EEEEECCEEEEEEEcCC-CcEEEEEEe-cCCceEEEEcCEEEECcCCCcccc
Confidence 54443 88899999999977531 344466652 012235799999999999997765
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-06 Score=72.47 Aligned_cols=176 Identities=23% Similarity=0.228 Sum_probs=100.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCccee-chhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVL-TREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~-p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
-+++|||+|++|+++|..|++.|.+|+++.+.....- +... . +..+....+.+.+ . .
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~-~----~~~~~~~~~~~~~------------~-d---- 61 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLP-P----KPPFPPGSLLERA------------Y-D---- 61 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC-C----CSCCCTTCHHHHH------------C-C----
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCc-c----ccccchhhHHhhh------------c-c----
Confidence 4799999999999999999999999999998731110 0000 0 0000000000000 0 0
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCC-CeEEccC-cceEeC--C---eEEEcCCcEeeccEEEEecCCCCCcchhcc
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKG-EIQVFPS-ITSINR--N---EVEFENGKIEEFEAIIFATGYKSTVRNWLK 321 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 321 (381)
..++ .+..+...+.+.+++. +++++.. ++++.. + .+.+.+|+++++|.||+|+|..++....+.
T Consensus 62 -~~g~--------~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G 132 (232)
T 2cul_A 62 -PKDE--------RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLG 132 (232)
T ss_dssp -TTCC--------CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEET
T ss_pred -CCCC--------CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecC
Confidence 0000 0112233345566665 8888855 777653 2 366778888999999999999665431110
Q ss_pred --------------------ccCCcc-ccc--------CCCCC-------CC------CCCCCCCCCcEEEEeccccccc
Q 035902 322 --------------------RADKDF-FDE--------YGMPK-------RN------CPNHWKGENGLYCAGFSRTGLH 359 (381)
Q Consensus 322 --------------------~~~~~~-~~~--------~g~~~-------~~------~~~~~~~~~~ifa~Gd~~~~~~ 359 (381)
+...++ ++. .|.+. .. .....++.||||++|||+ ...
T Consensus 133 ~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g 211 (232)
T 2cul_A 133 GVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG 211 (232)
T ss_dssp TEEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC
T ss_pred CccCCCCCCcccchhhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc
Confidence 000111 110 01100 00 001125889999999999 433
Q ss_pred ---CccHHHHHHHHHhhhccc
Q 035902 360 ---GISIDAKNIANDINLALT 377 (381)
Q Consensus 360 ---~a~~~a~~~a~~i~~~l~ 377 (381)
.+..||+.+|++|...|+
T Consensus 212 ~~~~~~~~g~~~a~~i~~~l~ 232 (232)
T 2cul_A 212 DYARMSEEGKRLAEHLLHELG 232 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHhhcC
Confidence 778999999999988763
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=78.38 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=72.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. .. ..+.
T Consensus 156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~----------------------------------~~-~~~~--- 197 (335)
T 2a87_A 156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR----------------------------------AS-KIML--- 197 (335)
T ss_dssp CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS----------------------------------SC-TTHH---
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC----------------------------------cc-HHHH---
Confidence 689999999999999999999999999999875321 00 0111
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
++..++.++++++++.+.++..++ +...+.+.+...++...+.+|.||+|+|..|...-+
T Consensus 198 ~~~~~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 257 (335)
T 2a87_A 198 DRARNNDKIRFLTNHTVVAVDGDT--TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLV 257 (335)
T ss_dssp HHHHHCTTEEEECSEEEEEEECSS--SCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTT
T ss_pred HHHhccCCcEEEeCceeEEEecCC--cEeEEEEEEcCCCceEEeecCEEEEccCCccChhHh
Confidence 223455689999999999987654 222255554222233679999999999999775433
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.5e-07 Score=80.58 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=38.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC-CCCCCCcCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE-DCSASLWKK 44 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~-~~~g~~~~~ 44 (381)
.+||+|||||++|+++|+.|.+.|.+|+|+|++ +.+||.+..
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t 86 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence 479999999999999999999999999999999 999996654
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=83.95 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++||+|||||++|++||+.|++.|.+|+|+|+++.+||.
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr 42 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR 42 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence 489999999999999999999999999999999988874
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.2e-07 Score=80.65 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=39.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
++||+|||||++|+++|+.|++.|.+|+|+|+++.+||.+..
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 70 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence 489999999999999999999999999999999999997654
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-06 Score=76.33 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=67.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce-echhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV-LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.+++|||+|+.|+.+|..|++.|.+|+++.+.+..- .+.. ..++.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~---------------------------------~~~~~- 48 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASH---------------------------------SHGFL- 48 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSC---------------------------------CCSST-
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchh---------------------------------hcCCc-
Confidence 479999999999999999999999999999865110 0000 00000
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCC-CeEEccC-cceEeCC----eEEEcCCcEeeccEEEEecCCCCCcc
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKG-EIQVFPS-ITSINRN----EVEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
... ......+...+.+.+++. +++++.. ++.++.+ .+.+.+++++.+|.+|+|||.+|..+
T Consensus 49 -~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 49 -GQD-------GKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELP 115 (297)
T ss_dssp -TCT-------TCCHHHHHHHHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred -CCC-------CCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCC
Confidence 000 000001111223334443 6777666 7777643 56777888999999999999987653
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-06 Score=81.55 Aligned_cols=42 Identities=31% Similarity=0.486 Sum_probs=39.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDCSASLWKK 44 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~~g~~~~~ 44 (381)
++||+|||||++|+++|+.|++.| .+|+|+|+++.+||.+..
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence 489999999999999999999998 799999999999997765
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.5e-06 Score=79.05 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=74.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+|+|||||+.|+.+|..|++.|.+|+++++.. +. +. ...++.+.+
T Consensus 287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~l-------------------------------~~--~d~~~~~~~ 332 (598)
T 2x8g_A 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI-LL-------------------------------RG--FDQQMAEKV 332 (598)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SS-------------------------------TT--SCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCc-Cc-------------------------------Cc--CCHHHHHHH
Confidence 579999999999999999999999999999862 11 00 123666777
Q ss_pred HHHHHHhCCccccccEEEEEEEe-----CC--CCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYD-----EN--AKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~-----~~--~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+..+... .. .+...+..... .++...+.+|.||+|+|..|+..
T Consensus 333 ~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~D~vi~a~G~~p~~~ 398 (598)
T 2x8g_A 333 GDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYT-DGKKFEEEFETVIFAVGREPQLS 398 (598)
T ss_dssp HHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEET-TSCEEEEEESEEEECSCEEECGG
T ss_pred HHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeC-CCcEEeccCCEEEEEeCCccccC
Confidence 77888889999999888877543 11 13433443211 11223456999999999997653
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.3e-06 Score=73.97 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||+|+.|+.+|..|.+.+.+|+++++.+.+. ... ..+
T Consensus 148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------------~~~---~~~ 189 (315)
T 3r9u_A 148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR-----------------------------------AAP---STV 189 (315)
T ss_dssp SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB-----------------------------------SCH---HHH
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC-----------------------------------CCH---HHH
Confidence 679999999999999999999999999999876321 011 223
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
++..++.++++++++.+.++..++ .....+.+. ...++...+.+|.||+|+|..|...
T Consensus 190 ~~~~~~~gv~~~~~~~v~~i~~~~-~~~~~v~~~-~~~g~~~~~~~D~vv~a~G~~p~~~ 247 (315)
T 3r9u_A 190 EKVKKNEKIELITSASVDEVYGDK-MGVAGVKVK-LKDGSIRDLNVPGIFTFVGLNVRNE 247 (315)
T ss_dssp HHHHHCTTEEEECSCEEEEEEEET-TEEEEEEEE-CTTSCEEEECCSCEEECSCEEECCG
T ss_pred HHHHhcCCeEEEeCcEEEEEEcCC-CcEEEEEEE-cCCCCeEEeecCeEEEEEcCCCCch
Confidence 344466799999999999998764 122235555 1122345799999999999987654
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=82.93 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=37.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK 43 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~ 43 (381)
.+||+|||||++|+++|+.|++.|++|+|+|+++.+||.+.
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 53 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR 53 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 37999999999999999999999999999999999988543
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-06 Score=81.86 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=36.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
.+||+|||||++|++||+.|++.|.+|+|+|+++.+||.
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr 54 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA 54 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCce
Confidence 489999999999999999999999999999999988873
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.16 E-value=9.8e-06 Score=77.15 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=74.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||..|+.+|..|++.+.+|+++++.+.+. .. ..+
T Consensus 356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~----------------------------------~~-----~~l 396 (521)
T 1hyu_A 356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----------------------------------AD-----QVL 396 (521)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC----------------------------------SC-----HHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC----------------------------------cC-----HHH
Confidence 689999999999999999999999999999875221 00 223
Q ss_pred HHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++ .++++++++.+..+..++ .+...+.+.++..++...+.+|.||+|+|..|+..
T Consensus 397 ~~~l~~~~gV~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 456 (521)
T 1hyu_A 397 QDKVRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTH 456 (521)
T ss_dssp HHHHTTCTTEEEECSEEEEEEEECS-SSEEEEEEEETTTCCEEEEECSEEEECCCEEESCG
T ss_pred HHHHhcCCCcEEEeCCEEEEEEcCC-CcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCch
Confidence 334444 588999999999997653 22223666664444556899999999999887653
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-06 Score=77.81 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=72.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhh---CCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSS---CGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~---~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
++++|||+|+.|+.+|..|++ .|.+|+++.+.+....... +
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~------------------------------------~ 45 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA------------------------------------L 45 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS------------------------------------S
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc------------------------------------h
Confidence 579999999999999999999 8899999999883211000 0
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--eEEEcCCcE----eeccEEEEecCCCCCcc
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--EVEFENGKI----EEFEAIIFATGYKSTVR 317 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~v~~~~g~~----~~~D~vi~a~G~~p~~~ 317 (381)
.... ........+...+.+.+++.+++++.+ ++.++.+ .+.+.+++. +++|.+|+|+|.+|+.+
T Consensus 46 ~~~~-------~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 46 PHVA-------IGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp CCCC-------SSCCCCCCEEEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred hhcc-------cCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 0000 000001112223455666678888888 8888765 677777753 89999999999998864
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-06 Score=81.76 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=36.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++||+|||||++|++||+.|++.|.+|+|+|+++.+||.
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 49 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR 49 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 489999999999999999999999999999999998884
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-06 Score=81.53 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=36.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+||+|||||++|++||+.|++.|.+|+|+|+++.+||.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr 77 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR 77 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTT
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence 79999999999999999999999999999999988873
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.6e-06 Score=82.22 Aligned_cols=101 Identities=13% Similarity=0.030 Sum_probs=72.7
Q ss_pred ccEEEEC--CCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVG--AGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIG--aG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
.+|+||| +|..|+.+|..|++.|.+|+++++.+.+.... .......
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~--------------------------------~~~~~~~ 571 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT--------------------------------NNTFEVN 571 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG--------------------------------GGGTCHH
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc--------------------------------ccchhHH
Confidence 5699999 99999999999999999999999876432100 0012234
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+.+++.|++++.+++|.++..+ . +.+.....++.+.+.+|.||+|+|..|+.
T Consensus 572 ~l~~~l~~~GV~i~~~~~V~~i~~~----~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~~ 626 (690)
T 3k30_A 572 RIQRRLIENGVARVTDHAVVAVGAG----G--VTVRDTYASIERELECDAVVMVTARLPRE 626 (690)
T ss_dssp HHHHHHHHTTCEEEESEEEEEEETT----E--EEEEETTTCCEEEEECSEEEEESCEEECC
T ss_pred HHHHHHHHCCCEEEcCcEEEEEECC----e--EEEEEccCCeEEEEECCEEEECCCCCCCh
Confidence 5566677789999999999988743 2 22222111233689999999999998764
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-06 Score=77.07 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=37.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK 43 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~ 43 (381)
+||+|||||++|+++|+.|++.|.+|+|+|+++.+||...
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~ 41 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY 41 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceE
Confidence 7899999999999999999999999999999999988544
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=70.73 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=69.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+|+++.... .... .. .
T Consensus 153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~----------------------------------~~~~-~~---~ 194 (314)
T 4a5l_A 153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF----------------------------------RASK-TM---Q 194 (314)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC----------------------------------CSCH-HH---H
T ss_pred CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc----------------------------------cccc-hh---h
Confidence 67999999999999999999999999999976411 0111 11 1
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
.......+...+..+.+..+..... ..-.+...+....+.+.+.+|.|++|+|..|+...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l 255 (314)
T 4a5l_A 195 ERVLNHPKIEVIWNSELVELEGDGD-LLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFL 255 (314)
T ss_dssp HHHHTCTTEEEECSEEEEEEEESSS-SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG
T ss_pred hhhhcccceeeEeeeeeEEEEeeee-ccceeEEeecccccceeeccccceEecccccChhHh
Confidence 1222333455566666666665431 222245555444456789999999999999876543
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-06 Score=76.56 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++||+|||||++|+++|++|+++|.+|+|+|+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 5899999999999999999999999999999875
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-06 Score=79.28 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+||+|||||++|+++|+.|++.|++|+|||+..
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 789999999999999999999999999999875
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.8e-06 Score=76.85 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=38.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
++||+|||||++|+++|..|++.|.+|+++|+++.+||.+..
T Consensus 6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence 589999999999999999999999999999999999986543
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.6e-06 Score=77.67 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=38.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK 43 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~ 43 (381)
+++||+|||+|.+|+++|+.|++.|.+|+++|+++.+||.+.
T Consensus 19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~ 60 (475)
T 3p1w_A 19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETA 60 (475)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCcc
Confidence 358999999999999999999999999999999999998543
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.6e-06 Score=77.42 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=37.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKK 44 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~ 44 (381)
++||+|||||++|+++|+.|.+.|. +|+|+|+++.+||.+..
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence 4899999999999999999999998 89999999988886543
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=9.6e-06 Score=72.66 Aligned_cols=36 Identities=33% Similarity=0.349 Sum_probs=33.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
+||+|||||+||+.+|..|++.|.+|+|+|++...+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~ 37 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM 37 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence 789999999999999999999999999999887443
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.6e-06 Score=77.97 Aligned_cols=40 Identities=33% Similarity=0.362 Sum_probs=37.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
.+||+|||||++|+++|+.|++.|.+|+|+|+++.+||.+
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~ 72 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV 72 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence 4799999999999999999999999999999999888843
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.5e-05 Score=70.28 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=30.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.++|||+|+.|+.+|..+++.|.+|+++.+..
T Consensus 7 yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~ 39 (304)
T 4fk1_A 7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNT 39 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 368999999999999999999999999999764
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.7e-05 Score=72.94 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=62.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|..|+-+|..|++.|.+|+++++.+.+.+ . .++
T Consensus 198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~-----------------------~----~~~------------ 238 (464)
T 2xve_A 198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMG-----------------------Y----KWP------------ 238 (464)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCC-----------------------C----CCC------------
T ss_pred CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCC-----------------------C----CCC------------
Confidence 6899999999999999999999999999998763210 0 000
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
.++.++ ..|..+. + +. |.+.+| ..+.+|.||+|||..|..+-++
T Consensus 239 ------~~V~~~--~~V~~i~--~--~~--V~~~dG-----~~i~~D~Vi~atG~~p~~~~l~ 282 (464)
T 2xve_A 239 ------ENWDER--PNLVRVD--T--EN--AYFADG-----SSEKVDAIILCTGYIHHFPFLN 282 (464)
T ss_dssp ------TTEEEC--SCEEEEC--S--SE--EEETTS-----CEEECSEEEECCCBCCCCTTBC
T ss_pred ------CceEEc--CCeEEEe--C--CE--EEECCC-----CEEeCCEEEECCCCCCCCCCcC
Confidence 144443 5566663 2 33 777766 5689999999999998876543
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-05 Score=72.61 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=73.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh----------------h-------HHH-HHHHHhhCcHH
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE----------------I-------VFA-GMLLLKFLPCK 224 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~----------------~-------~~~-~~~~~~~l~~~ 224 (381)
..+|+|||+|++|+.+|..|++.|.+|+++.+.+. +.... . ... ...+..+-+..
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~-~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA-PGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD 105 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC-CCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence 45899999999999999999999999999998872 21000 0 000 01111111111
Q ss_pred HHHHHHHHHhhhhhcCccccCCCCCC--CCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C--eEEEc
Q 035902 225 LVDFIVVMLSKMKFGNLFKYGLERPK--KGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N--EVEFE 296 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~--~v~~~ 296 (381)
..+ + +...++.... .+..+ .......+...+.+.+++.+++++.+ |+++.. + .|.+.
T Consensus 106 ~~~----~--------~~~~Gi~~~~~~~g~~~---~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~ 170 (417)
T 3v76_A 106 FVA----L--------VERHGIGWHEKTLGQLF---CDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTS 170 (417)
T ss_dssp HHH----H--------HHHTTCCEEECSTTEEE---ESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEET
T ss_pred HHH----H--------HHHcCCCcEEeeCCEEe---eCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEEC
Confidence 111 1 1122222111 11111 01111233344566666678899887 777753 3 34555
Q ss_pred CCcEeeccEEEEecCCCCC
Q 035902 297 NGKIEEFEAIIFATGYKST 315 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G~~p~ 315 (381)
+| ++.+|.||.|+|..+.
T Consensus 171 ~g-~i~ad~VIlAtG~~S~ 188 (417)
T 3v76_A 171 AG-TVDAASLVVASGGKSI 188 (417)
T ss_dssp TE-EEEESEEEECCCCSSC
T ss_pred Cc-EEEeeEEEECCCCccC
Confidence 66 8999999999999874
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=8e-06 Score=73.63 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC------CCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS------VPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g------~~v~lie~~~ 36 (381)
+||+|||||++|+++|++|+++| .+|+|+|+..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 48999999999999999999998 8999999986
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4.6e-05 Score=77.83 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. . .
T Consensus 285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~------------------------------------~-~----- 322 (965)
T 2gag_A 285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS------------------------------------A-A----- 322 (965)
T ss_dssp SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC------------------------------------H-H-----
T ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc------------------------------------h-h-----
Confidence 579999999999999999999999999999876211 0 1
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEee--cC--CCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKN--TA--LDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~--~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
.+.+++.|+++++++.+.++..+.+.+...|.+.+ .. .++..++.+|.||+|+|..|+..
T Consensus 323 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~ 386 (965)
T 2gag_A 323 AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVH 386 (965)
T ss_dssp HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCH
T ss_pred HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChH
Confidence 23456779999999999999863112322355544 10 11236799999999999987753
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=64.06 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=64.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +.....
T Consensus 146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~----------------------------------~~~~~~---- 187 (312)
T 4gcm_A 146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR----------------------------------AQRILQ---- 187 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC----------------------------------SCHHHH----
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC----------------------------------cchhHH----
Confidence 689999999999999999999999999999876321 111111
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
....+..++.......+..+...+. ..-..............+.+|.|++++|..|...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~ 246 (312)
T 4gcm_A 188 DRAFKNDKIDFIWSHTLKSINEKDG-KVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTA 246 (312)
T ss_dssp HHHHHCTTEEEECSEEEEEEEEETT-EEEEEEEEETTTCCEEEEECSEEEECSCEEESCG
T ss_pred HHHHHhcCcceeeecceeeeecccc-ccccceeeeecCCceeEEeeeeEEeecCCCcCch
Confidence 1223333444455555554444331 1111222233333457899999999999997654
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=5.2e-05 Score=71.64 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh---hHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcccc
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE---IVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKY 244 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
...+|+|||+|++|+.+|..|++.|.+|+++.+.+. +.... ...........+... . . ...
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~-~g~~~~~~~~~~~~~~l~~~g~~--~----~-----~~~---- 154 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK-FSRHNVLHLWPFTIHDLRALGAK--K----F-----YGR---- 154 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS-CCCCCEEECCHHHHHHHHTTTHH--H----H-----CTT----
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc-cCCCCcccCChhHHHHHHHcCCc--c----c-----ccc----
Confidence 467899999999999999999999999999998862 21000 000000011111100 0 0 000
Q ss_pred CCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC-----C--eEEE--c-CC--cEeeccEEEEec
Q 035902 245 GLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR-----N--EVEF--E-NG--KIEEFEAIIFAT 310 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~-----~--~v~~--~-~g--~~~~~D~vi~a~ 310 (381)
+... ... ......+...+.+.+++.+++++.+ |+++.. + .+.+ . +| +++.+|.||.|+
T Consensus 155 -~~~~---~~~----~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~ 226 (497)
T 2bry_A 155 -FCTG---TLD----HISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAA 226 (497)
T ss_dssp -TTCT---TCC----EEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECC
T ss_pred -cccc---ccc----cCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECC
Confidence 0000 000 0001222334455566678888877 777764 1 4555 3 55 578999999999
Q ss_pred CCCCCcc
Q 035902 311 GYKSTVR 317 (381)
Q Consensus 311 G~~p~~~ 317 (381)
|..+...
T Consensus 227 G~~S~~r 233 (497)
T 2bry_A 227 GGKFVPE 233 (497)
T ss_dssp CTTCCCT
T ss_pred CCCcccc
Confidence 9998764
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.76 E-value=2.1e-05 Score=77.13 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=37.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
.+||+|||||++|+++|+.|.+.|++|+|+|+.+.+||.+
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~ 146 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV 146 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 3799999999999999999999999999999999888843
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.4e-05 Score=70.32 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|..|+.+|..|++.+ +|+++.+..
T Consensus 164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~ 195 (357)
T 4a9w_A 164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE 195 (357)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence 68999999999999999999998 699998773
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-05 Score=78.27 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=37.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
.++|+|||||++|+++|+.|++.|++|+|+|+.+.+||.+
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~ 317 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV 317 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence 3789999999999999999999999999999999888853
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.3e-05 Score=70.15 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=60.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||+|..|+-+|..|++.+.+ |+++++...+
T Consensus 213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~-------------------------------------------- 248 (447)
T 2gv8_A 213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD-------------------------------------------- 248 (447)
T ss_dssp CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS--------------------------------------------
T ss_pred CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc--------------------------------------------
Confidence 6899999999999999999999998 9999987521
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
++..++ ..+..|..+..++ .. |.+.+| ...+.+|.||+|||..|..+-
T Consensus 249 ----l~~~~i--~~~~~v~~~~~~~--~~--v~~~dG----~~~~~~D~vi~atG~~~~~~~ 296 (447)
T 2gv8_A 249 ----IQNESL--QQVPEITKFDPTT--RE--IYLKGG----KVLSNIDRVIYCTGYLYSVPF 296 (447)
T ss_dssp ----CBCSSE--EEECCEEEEETTT--TE--EEETTT----EEECCCSEEEECCCBCCCCCC
T ss_pred ----CCCCCe--EEecCeEEEecCC--CE--EEECCC----CEeccCCEEEECCCCCcCCCC
Confidence 001132 2345566664322 33 777765 133789999999999988765
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=9.5e-05 Score=70.53 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
++|+|||+|..|+.+|..|++.+.+|+++++.+.
T Consensus 179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 7899999999999999999999999999999875
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=67.75 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=74.1
Q ss_pred ccEEEECCCHHHHHHHHHHH--------------------hCCC-CeEEEecCCCCCCCcCCCC------CCCeeeecCC
Q 035902 4 VPVVIVGAGPAGLATSACLN--------------------NLSV-PNIILEREDCSASLWKKRA------YDRMKLHLAK 56 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~--------------------~~g~-~v~lie~~~~~g~~~~~~~------~~~~~~~~~~ 56 (381)
++|+|||+|..|+.+|..|+ +.+. +|+|+++...+...+...- .+........
T Consensus 146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~ 225 (460)
T 1cjc_A 146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDP 225 (460)
T ss_dssp SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEech
Confidence 67999999999999999999 5677 6999998763211000000 0000000000
Q ss_pred cccccCCCCCCCCCCCCCC-HHHHHHHHHHHHHH--------------hCCccccccEEEEEEEeCCC-CeEEEEEeecC
Q 035902 57 QFCELPHMPFPSRTPTFVP-RISFINYVDNYVSQ--------------MGINPRYHRSVESASYDENA-KAWIIVAKNTA 120 (381)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~~~ 120 (381)
. .+... ...++.... ...+.+.+++.+.+ .++.+++++.+..+..+++. ..-.|.+.+..
T Consensus 226 ~--~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~ 301 (460)
T 1cjc_A 226 A--DFLGL--QDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR 301 (460)
T ss_dssp G--GGTTH--HHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEE
T ss_pred h--hhcch--hhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEE
Confidence 0 00000 000001111 12244455555544 67889999999888764312 11113332100
Q ss_pred ------------CCceEEEEeCEEEEccCCCCCCCCCCCC
Q 035902 121 ------------LDAYEEYVARYLVVATGENGLIPEVPGL 148 (381)
Q Consensus 121 ------------~~~~~~~~~d~vIlAtG~~~~~~~~~g~ 148 (381)
.++.+.+.+|.||+|+|..|.. ++|+
T Consensus 302 l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~--l~gl 339 (460)
T 1cjc_A 302 LEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP--IDPS 339 (460)
T ss_dssp EESSGGGCEEEEEEEEEEEECSEEEECCCEECCC--CCTT
T ss_pred EccccCCCcccCCCceEEEEcCEEEECCCCCCCC--CCCC
Confidence 1123679999999999999875 3454
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=6.5e-05 Score=74.45 Aligned_cols=102 Identities=12% Similarity=-0.010 Sum_probs=69.6
Q ss_pred ccEEEEC--CCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVG--AGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIG--aG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
++|+||| ||..|+.+|..|++.|.+|+|+++.+ +... ..+.. . ..
T Consensus 529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~-----------------------------~~~~~--~-~~ 575 (729)
T 1o94_A 529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANY-----------------------------MHFTL--E-YP 575 (729)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHH-----------------------------HHHTT--C-HH
T ss_pred CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccc-----------------------------ccccc--c-HH
Confidence 5899999 99999999999999999999999876 3210 00000 0 23
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEE--eecCC--------------CceEEEEeCEEEEccCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVA--KNTAL--------------DAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~--~~~~~--------------~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+.+++.|+++++++.+.++..+ ...+.. .++.. +....+.+|.||+|+|..|..
T Consensus 576 ~~~~~l~~~GV~i~~~~~v~~i~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~ 648 (729)
T 1o94_A 576 NMMRRLHELHVEELGDHFCSRIEPG----RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648 (729)
T ss_dssp HHHHHHHHTTCEEECSEEEEEEETT----EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred HHHHHHHhCCCEEEcCcEEEEEECC----eEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence 4445566779999999999988632 222322 11100 112359999999999998764
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=5.2e-05 Score=66.85 Aligned_cols=189 Identities=15% Similarity=0.226 Sum_probs=98.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecCcceechhhHHHHHHHHh-hCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGPVHVLTREIVFAGMLLLK-FLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~~~~~p~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
+++|||+|+.|+.+|..|++. |.+|.++.+.+. .--.... ....+.. ........ .+...++.
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~-~ggg~~~-~g~~~~~~~~~~~~~~------------~L~~~Gv~ 132 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA-PGGGSWL-GGQLFSAMVMRKPAHL------------FLQELEIP 132 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS-CCTTTTC-CGGGCCCEEEETTTHH------------HHHHTTCC
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc-ccccccc-cCcccchhhhhhHHHH------------HHHhhCcc
Confidence 799999999999999999998 899999998762 1100000 0000000 00000000 01122222
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcC-CCeEEccC--cceEeC----C-------eEEEc--------------CCc
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRK-GEIQVFPS--ITSINR----N-------EVEFE--------------NGK 299 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~v~~----~-------~v~~~--------------~g~ 299 (381)
....+.+.... ..+.+...+.+.+.+ .+++++.+ ++.+.. + ++... ++.
T Consensus 133 ~~~~g~~~~~~---~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~ 209 (326)
T 2gjc_A 133 YEDEGDYVVVK---HAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPN 209 (326)
T ss_dssp CEECSSEEEES---CHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCE
T ss_pred cccCCCeEEEc---chHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCce
Confidence 21112111110 112223334555555 58998877 655531 1 23321 335
Q ss_pred Eeec---------------cEEEEecCCCCCcchhccccCCcccccCCCCC----CC--------CCCC--CCCCCcEEE
Q 035902 300 IEEF---------------EAIIFATGYKSTVRNWLKRADKDFFDEYGMPK----RN--------CPNH--WKGENGLYC 350 (381)
Q Consensus 300 ~~~~---------------D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~----~~--------~~~~--~~~~~~ifa 350 (381)
++.+ +.||.|||....+..++. .....++..+.+. .+ .+.. +...|++|+
T Consensus 210 ~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 288 (326)
T 2gjc_A 210 VIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCA-KRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYF 288 (326)
T ss_dssp EEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHH-HHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEE
T ss_pred EEEEeeccccccccccccCCEEEECcCCCchHHHHHH-hhccccccccccCceeccccccchhheeecCCCccccCCEEE
Confidence 7889 999999999977655544 2111122222111 11 0011 125699999
Q ss_pred Eecccc--------ccc--CccHHHHHHHHHhhhccc
Q 035902 351 AGFSRT--------GLH--GISIDAKNIANDINLALT 377 (381)
Q Consensus 351 ~Gd~~~--------~~~--~a~~~a~~~a~~i~~~l~ 377 (381)
+|.... ++. ....+|+.+|+.|.+.|+
T Consensus 289 ~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~~~~~~~ 325 (326)
T 2gjc_A 289 AGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp CTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhcCCCCCChhhhhhhhhhHHHHHHHHHHhh
Confidence 997642 222 666899999999988775
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=7.6e-05 Score=73.33 Aligned_cols=127 Identities=13% Similarity=0.024 Sum_probs=67.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEec--CCCCCC--Cc-CCC----CCCCeeeecCCcccccCCCCCCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILER--EDCSAS--LW-KKR----AYDRMKLHLAKQFCELPHMPFPSRTPTFV 74 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~--~~~~g~--~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (381)
++|+|||||+.|+.+|..|++.|.+++++-. ....+. .+ ... ..+... .......-+...+ ..+....
T Consensus 495 ~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~--~~l~~~l 571 (671)
T 1ps9_A 495 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIP-RSPRQIVMLQRKA--SKPGQGL 571 (671)
T ss_dssp SEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCC-CCSSEEEEECSSC--SCTTTTS
T ss_pred CeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccC-CCCcEEEEEEecc--hhhcccc
Confidence 6899999999999999999998877654200 000000 00 000 000000 0000000000000 0001000
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
......++.+.+++.|++++.++++.+++. +...+. .++ +...+.+|.||+|+|..|+.
T Consensus 572 -~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~----~~v~~~-~~G---~~~~i~~D~Vi~a~G~~p~~ 630 (671)
T 1ps9_A 572 -GKTTGWIHRTTLLSRGVKMIPGVSYQKIDD----DGLHVV-ING---ETQVLAVDNVVICAGQEPNR 630 (671)
T ss_dssp -CTTTHHHHHHHHHHTTCEEECSCEEEEEET----TEEEEE-ETT---EEEEECCSEEEECCCEEECC
T ss_pred -ccccHHHHHHHHHhcCCEEEeCcEEEEEeC----CeEEEe-cCC---eEEEEeCCEEEECCCccccH
Confidence 112334455667778999999999988862 232232 333 33679999999999999764
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=68.62 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=63.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++|+|||||..|+-+|..+.+.|.+ |+++++.+... ++.. ..+
T Consensus 265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~------------------------------~p~~--~~e---- 308 (456)
T 2vdc_G 265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKN------------------------------MPGS--QRE---- 308 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTT------------------------------CSSC--HHH----
T ss_pred CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccC------------------------------CCCC--HHH----
Confidence 6799999999999999999999985 99998875210 0111 112
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEe---------ecC------CCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAK---------NTA------LDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~---------~~~------~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
.+.+++.|+++++++.+..+..+. ..-.|.+. +|. .+....+.+|.||+|+|..|..
T Consensus 309 -~~~~~~~Gv~~~~~~~~~~i~~~g--~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~ 380 (456)
T 2vdc_G 309 -VAHAEEEGVEFIWQAAPEGFTGDT--VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPED 380 (456)
T ss_dssp -HHHHHHTTCEEECCSSSCCEEEEE--EEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCC
T ss_pred -HHHHHHCCCEEEeCCCceEEeCCC--cEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCc
Confidence 123455688888877666664321 10001111 110 1123579999999999998754
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=8e-05 Score=68.29 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++|||+|++|+.+|..+++.|.+|+++.+.+
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~ 37 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 469999999999999999999999999999886
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00022 Score=66.52 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--------------------CC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--------------------SV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELP 62 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--------------------g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 62 (381)
.+|+|||+|..|+.+|..|++. +. +|+|+++...+...+... .+ ..+..++
T Consensus 148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~---el-----rel~~lp 219 (456)
T 1lqt_A 148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTL---EL-----RELADLD 219 (456)
T ss_dssp SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHH---HH-----HHGGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChH---HH-----HHhhcCC
Confidence 6799999999999999999874 54 899999876332111100 00 0000000
Q ss_pred CC---CCCCCCC-CC-------C-CHHHHHHHHHHHHHH------hCCccccccEEEEEEEeCCCCeEEEEEeec-----
Q 035902 63 HM---PFPSRTP-TF-------V-PRISFINYVDNYVSQ------MGINPRYHRSVESASYDENAKAWIIVAKNT----- 119 (381)
Q Consensus 63 ~~---~~~~~~~-~~-------~-~~~~~~~~~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~----- 119 (381)
.. ..+.++. .. + ....+.+.+.+.+.+ .++.+++++.+..+..++.-.. |.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~--v~~~~~~~~~~ 297 (456)
T 1lqt_A 220 GVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVER--IVLGRNELVSD 297 (456)
T ss_dssp TEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCE--EEEEEEEEEEC
T ss_pred CceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeE--EEEEEEEecCC
Confidence 00 0000000 00 0 011223444454444 5788899999988875421112 333210
Q ss_pred --------CCCceEEEEeCEEEEccCCCCCC
Q 035902 120 --------ALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 120 --------~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..++.+.+.+|.||.|+|..|..
T Consensus 298 ~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~ 328 (456)
T 1lqt_A 298 GSGRVAAKDTGEREELPAQLVVRSVGYRGVP 328 (456)
T ss_dssp SSSSEEEEEEEEEEEEECSEEEECSCEECCC
T ss_pred CcccccccCCCceEEEEcCEEEEccccccCC
Confidence 01123579999999999999765
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.4e-05 Score=72.58 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+++|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~ 140 (549)
T 3nlc_A 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549)
T ss_dssp CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence 35789999999999999999999999999999886
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00024 Score=64.65 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech--hh--HHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcccc
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR--EI--VFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKY 244 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~--~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
..+|+|||+|++|+.+|..|++.|.+|+++.+.+. +.+. .. ..-...+.+.+. ..+.+.... . .....
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~-~~~~~~~~~l~~~~~~~l~~~g--~~~~~~~~~--~---~~~~~ 82 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE-LRAFGAGIYLWHNGLRVLEGLG--ALDDVLQGS--H---TPPTY 82 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-CCCCSSEEEEEHHHHHHHHHTT--CHHHHHTTC--B---CCSCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCCCCceEEeCccHHHHHHHcC--CHHHHHhhC--C---Cccce
Confidence 46899999999999999999999999999998872 2110 00 011111111111 001110000 0 00000
Q ss_pred CCCCCCCCCcccc-------cccCCCccccchhhhhhcCCCeEEccC--cceEeCC-eEEEcCCcEeeccEEEEecCCCC
Q 035902 245 GLERPKKGPFYFK-------AITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-EVEFENGKIEEFEAIIFATGYKS 314 (381)
Q Consensus 245 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-~v~~~~g~~~~~D~vi~a~G~~p 314 (381)
.+... +..... .....+..+...+.+.+.+.+++++.+ |++++.+ .+.+.+|+++.+|.||.|+|..+
T Consensus 83 ~~~~~--g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 83 ETWMH--NKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVGS 160 (379)
T ss_dssp EEEET--TEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTTC
T ss_pred EEEeC--CceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCccH
Confidence 00000 000000 000111233344556666678888877 7777533 67778898999999999999887
Q ss_pred Ccc
Q 035902 315 TVR 317 (381)
Q Consensus 315 ~~~ 317 (381)
...
T Consensus 161 ~vr 163 (379)
T 3alj_A 161 KVR 163 (379)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=7.8e-05 Score=69.52 Aligned_cols=143 Identities=15% Similarity=0.274 Sum_probs=74.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhh------------HHHHHHHHhhCcH--HHHHHHHHHH-h
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREI------------VFAGMLLLKFLPC--KLVDFIVVML-S 234 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~------------~~~~~~~~~~l~~--~~~~~~~~~~-~ 234 (381)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+. +..... .... .+...++. .+....+..+ .
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~-~g~~~~~sg~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 104 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK-LGRKLAISGGGRCNVTNRLPLD-EIVKHIPGNGRFLYSAFSIFNN 104 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCHHHHHTGGGTCCCEECSCHH-HHHHTCTBTGGGGHHHHHHSCH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC-CCceeEEeCCCceeccCcccHH-HHHHHhccChHHHHHHHHhcCH
Confidence 4799999999999999999999999999998762 210000 0000 11111100 0000000000 0
Q ss_pred hhhhcCccccCCCCCCCC-CcccccccCCCccccchhhhhhcCCCeEEccC--cceEe--CC---eEEEcCCcEeeccEE
Q 035902 235 KMKFGNLFKYGLERPKKG-PFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSIN--RN---EVEFENGKIEEFEAI 306 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~--~~---~v~~~~g~~~~~D~v 306 (381)
.....-+...++...... ...+. .......+...+.+.+++.+++++.+ |+++. ++ +|.+.+|+++.+|.|
T Consensus 105 ~~~~~~~~~~G~~~~~~~~g~~~p-~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~V 183 (447)
T 2i0z_A 105 EDIITFFENLGVKLKEEDHGRMFP-VSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHV 183 (447)
T ss_dssp HHHHHHHHHTTCCEEECGGGEEEE-TTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCE
T ss_pred HHHHHHHHhcCCceEEeeCCEEEC-CCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEE
Confidence 000000112222110000 00000 00011222334566667788999877 77775 33 366778878999999
Q ss_pred EEecCCCCC
Q 035902 307 IFATGYKST 315 (381)
Q Consensus 307 i~a~G~~p~ 315 (381)
|+|+|..+.
T Consensus 184 VlAtGg~s~ 192 (447)
T 2i0z_A 184 VIAVGGKSV 192 (447)
T ss_dssp EECCCCSSS
T ss_pred EECCCCCcC
Confidence 999999874
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00024 Score=65.78 Aligned_cols=32 Identities=34% Similarity=0.556 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+++|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~ 34 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 68999999999999999999999999999854
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.8e-05 Score=68.16 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
-+++|||+|+.|+-+|..|++. |.+|.++.+.+
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~ 114 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV 114 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 5799999999999999999997 89999999886
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=9.8e-05 Score=70.72 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|++|||||++|+.+|.+|.+.|.+|+|+|+..
T Consensus 7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~ 40 (546)
T 1kdg_A 7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 40 (546)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5899999999999999999999999999999875
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=68.67 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|||+|.+|+.+|..|.+.|.+|+++.+.+
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~ 54 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS 54 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3579999999999999999999999999999876
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=69.99 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|||+|.+|+.+|..|.+.|.+|+++.+.+
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~ 42 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGE 42 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3579999999999999999999999999999886
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00079 Score=69.23 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=65.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.+|+|||||..|+.+|..+++.|. +|+++++.+.. ..+. ...++
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~------------------------------~~~~--~~~e~--- 377 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV------------------------------NIRA--VPEEV--- 377 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG------------------------------GCCS--CHHHH---
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChh------------------------------hCCC--CHHHH---
Confidence 479999999999999999999996 89999987510 0000 11222
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEee------cC----CCceEEEEeCEEEEccCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKN------TA----LDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~------~~----~~~~~~~~~d~vIlAtG~~~ 140 (381)
+.+++.|+++++++.+..+..++ +.. .|.+.+ +. .++...+.+|.||+|+|..|
T Consensus 378 --~~~~~~Gv~~~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~ 442 (1025)
T 1gte_A 378 --ELAKEEKCEFLPFLSPRKVIVKG--GRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVL 442 (1025)
T ss_dssp --HHHHHTTCEEECSEEEEEEEEET--TEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEEC
T ss_pred --HHHHHcCCEEEeCCCceEEEccC--CeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCC
Confidence 23455699998888888886543 321 133221 00 01235789999999999975
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=69.52 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHh-CCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNN-LSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~-~g~~v~lie~~~ 36 (381)
+||+||||||+||+.+|.+|++ .+.+|+|+|+..
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~ 51 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE 51 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence 4899999999999999999998 578999999875
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0002 Score=67.73 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=34.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
.++|++|||+|++|+.+|..|.+.|.+|+|+|+....+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 46899999999999999999999999999999987443
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.32 E-value=8.3e-05 Score=71.44 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~ 82 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLV 82 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 479999999999999999999999999999886
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00087 Score=61.30 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=75.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh----hHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCc---c
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE----IVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNL---F 242 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~ 242 (381)
.+|+|||+|..|+.+|..|++.|.+|+++.+.+. ..+.. .......+.+.+. ..+.+..... ..... .
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~-~~~~~~~~~l~~~~~~~l~~~g--~~~~~~~~~~--~~~~~~~~~ 81 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR-ERAINGADLLKPAGIRVVEAAG--LLAEVTRRGG--RVRHELEVY 81 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC-C---CCCCEECHHHHHHHHHTT--CHHHHHHTTC--EEECEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC-CCccCceeeECchHHHHHHHcC--cHHHHHHhCC--CcceeEEEe
Confidence 4799999999999999999999999999998862 21100 0011111111111 0111110000 00000 0
Q ss_pred ccC-----CCCCCCCCcccccccCCCccccchhhhhhcCC-CeEEccC--cceEeCC------eEEEcCCcEeeccEEEE
Q 035902 243 KYG-----LERPKKGPFYFKAITGQTPTIDVGAMDKIRKG-EIQVFPS--ITSINRN------EVEFENGKIEEFEAIIF 308 (381)
Q Consensus 243 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~v~~~------~v~~~~g~~~~~D~vi~ 308 (381)
..+ +......... ......+..+...+.+.+++. +++++.+ +++++.+ .+.+++|+++++|.||.
T Consensus 82 ~~g~~~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~ 160 (399)
T 2x3n_A 82 HDGELLRYFNYSSVDARG-YFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVG 160 (399)
T ss_dssp ETTEEEEEEETTSSCGGG-CEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCCEEEecchHHhcccC-ccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEE
Confidence 000 0000000000 001112223344456666666 8998877 7777542 45677888999999999
Q ss_pred ecCCCCCc
Q 035902 309 ATGYKSTV 316 (381)
Q Consensus 309 a~G~~p~~ 316 (381)
|+|.....
T Consensus 161 AdG~~s~v 168 (399)
T 2x3n_A 161 ADGIASYV 168 (399)
T ss_dssp CCCTTCHH
T ss_pred CCCCChHH
Confidence 99986543
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=7.8e-05 Score=72.67 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--------CCeEEEecCC-CC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--------VPNIILERED-CS 38 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--------~~v~lie~~~-~~ 38 (381)
++|+|||||++|++||+.|.+.| .+|+|+|+++ .+
T Consensus 57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 68999999999999999999998 8999999998 88
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00076 Score=61.69 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 38 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999987
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=68.75 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDC 37 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~ 37 (381)
+||++|||||.||+.+|.+|.+.+ .+|+|+|+...
T Consensus 6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 499999999999999999999987 69999999865
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=69.21 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
++|++|||||+||+.+|.+|.+ |.+|+|+|+....
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence 4899999999999999999999 9999999998643
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0003 Score=67.50 Aligned_cols=138 Identities=15% Similarity=0.071 Sum_probs=72.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCccee-----chh----hHHHHHHHHhhCcHHHHHHHHHHHhhhhhcC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVL-----TRE----IVFAGMLLLKFLPCKLVDFIVVMLSKMKFGN 240 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~-----p~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (381)
-+|+|||+|..|+++|..+++.|.+|.++.+.+..+- |.. ...+...+.. +...+. .... .. .-.
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~elda-lgg~~~-~~~d---~~-gi~ 101 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDA-LGGEMG-KAID---QT-GIQ 101 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHH-HTCSHH-HHHH---HH-EEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHH-hhhHHH-HHhh---hc-ccc
Confidence 5799999999999999999999999999998631110 100 0011111100 000000 0000 00 000
Q ss_pred ccccCCCCCCCCCcccc-cccCCCccccchhhhhhcC-CCeEEccC-cceEe--CC---eEEEcCCcEeeccEEEEecCC
Q 035902 241 LFKYGLERPKKGPFYFK-AITGQTPTIDVGAMDKIRK-GEIQVFPS-ITSIN--RN---EVEFENGKIEEFEAIIFATGY 312 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~-v~~v~--~~---~v~~~~g~~~~~D~vi~a~G~ 312 (381)
++... ...++.... .....+..+...+.+.+++ .+++++.. |+.+. ++ +|.+.+|+++.+|.||+|||.
T Consensus 102 f~~l~---~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~ 178 (637)
T 2zxi_A 102 FKMLN---TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGT 178 (637)
T ss_dssp EEEES---TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTT
T ss_pred eeecc---cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCC
Confidence 00000 000000000 0000011233344556666 58888766 77764 33 467788989999999999998
Q ss_pred CCCc
Q 035902 313 KSTV 316 (381)
Q Consensus 313 ~p~~ 316 (381)
.++.
T Consensus 179 ~s~~ 182 (637)
T 2zxi_A 179 FLNG 182 (637)
T ss_dssp CBTC
T ss_pred CccC
Confidence 7654
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00035 Score=67.24 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=39.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
+|||+|||+|..|...|..|++.|.+|++||++++.||.|..
T Consensus 8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~ 49 (650)
T 1vg0_A 8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 49 (650)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence 599999999999999999999999999999999999997754
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00072 Score=65.10 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=72.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCccee-----ch----hhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVL-----TR----EIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGN 240 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~-----p~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (381)
-+|+|||+|..|+++|..+++.|.+|.++.+.+..+- |. ....+...+.. +...+. ...... .. .
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~a-lgg~~~-~~~d~~-gi---~ 102 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDA-LGGLMA-KAIDQA-GI---Q 102 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHH-TTCSHH-HHHHHH-EE---E
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHH-hccHHH-HHhhhc-cc---c
Confidence 4799999999999999999999999999998631110 00 00011111111 110000 000000 00 0
Q ss_pred ccccCCCCCCCCCcccc-cccCCCccccchhhhhhcC-CCeEEccC-cceEe--CC---eEEEcCCcEeeccEEEEecCC
Q 035902 241 LFKYGLERPKKGPFYFK-AITGQTPTIDVGAMDKIRK-GEIQVFPS-ITSIN--RN---EVEFENGKIEEFEAIIFATGY 312 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~-v~~v~--~~---~v~~~~g~~~~~D~vi~a~G~ 312 (381)
++... ...++.... .....+..+...+.+.+++ .+++++.. |+.+. ++ +|.+.+|.++.+|.||+|||.
T Consensus 103 f~~l~---~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt 179 (651)
T 3ces_A 103 FRILN---ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGT 179 (651)
T ss_dssp EEEES---TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCST
T ss_pred hhhhh---cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCC
Confidence 00000 000000000 0000001223344556666 68888766 77774 33 466778888999999999998
Q ss_pred CCCc
Q 035902 313 KSTV 316 (381)
Q Consensus 313 ~p~~ 316 (381)
.+..
T Consensus 180 ~s~~ 183 (651)
T 3ces_A 180 FLDG 183 (651)
T ss_dssp TTCC
T ss_pred CccC
Confidence 7653
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00029 Score=67.89 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=32.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHh-CCCCeEEEecCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNN-LSVPNIILEREDC 37 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~-~g~~v~lie~~~~ 37 (381)
.++|++|||+|++|+.+|..|.+ .|.+|+|+|+...
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~ 59 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence 45899999999999999999999 7999999998753
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00036 Score=66.03 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
++|++|||+|++|+.+|..|.+.|.+|+|+|+...
T Consensus 11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 58999999999999999999999999999998753
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00033 Score=67.14 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~ 36 (381)
+||++|||||.||+.+|.+|.+. +.+|+|+|+..
T Consensus 19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 48999999999999999999975 78999999876
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0022 Score=61.72 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|..|+.+|..+++.|.+|+++.+.+
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~ 159 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 159 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3579999999999999999999999999999876
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00015 Score=66.86 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00043 Score=66.67 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||||..|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~ 56 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 5789999999999999999999999999999885
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0025 Score=61.29 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.-+++|||+|..|+++|..+++.|.+|.++.+.+
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~ 54 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL 54 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence 3589999999999999999999999999999874
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0031 Score=58.09 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++++|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999864
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0018 Score=59.20 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~ 34 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS 34 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 79999999999999999999999999999877
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0023 Score=58.33 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 35 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 369999999999999999999999999999887
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0014 Score=59.53 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++|||+|.+|+.+|..|++.|.+|+++.+..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999999999999999999875
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00035 Score=66.79 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHHh-CCCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNN-LSVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~-~g~~v~lie~~~~~ 38 (381)
+||++|||||.||+.+|.+|.+ .+.+|+|+|+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 5899999999999999999998 58999999987543
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00044 Score=63.51 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..-+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~ 56 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK 56 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35689999999999999999999999999999987
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00097 Score=60.02 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999999985
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.001 Score=63.05 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 479999999999999999999999999999886
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0024 Score=61.27 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|..|+.+|..+++.|.+|+++.+.+
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~ 154 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 154 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 369999999999999999999999999999876
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0015 Score=50.92 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=33.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|.+.+++|+|+|..|...+..|.+.|.+|+++|+++
T Consensus 1 ~~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 1 HRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 777899999999999999999999999999999863
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00076 Score=64.43 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~ 38 (381)
++|++|||+|++|+.+|..|.+. +.+|+|+|+....
T Consensus 13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 48999999999999999999998 8999999987543
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0036 Score=56.72 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3579999999999999999999999999999875
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0079 Score=54.89 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||+|++|+.+|..|++.|.+|+++.|.+
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 59 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 35689999999999999999999999999999986
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0074 Score=56.92 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~ 36 (381)
++|+|||+|.+|+.++..|++. +.+|+++-+..
T Consensus 247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~ 281 (501)
T 4b63_A 247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS 281 (501)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 6899999999999999999876 66899998875
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0021 Score=61.37 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~ 49 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 49 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999876
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00026 Score=66.88 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~ 45 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLP 45 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 34679999999999999999999999999999987
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0059 Score=54.43 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhh---CCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSS---CGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~---~g~~v~~i~r~~ 202 (381)
.+|+|||+|.+|+-+|..|++ .|.+|+++.+.+
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 379999999999999999999 899999999875
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0062 Score=58.50 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|||+|..|+.+|..+++.|.+|+++.+.+
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~ 159 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 159 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4579999999999999999999999999999876
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0036 Score=57.13 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhh-CC-CeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSS-CG-ACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~-~g-~~v~~i~r~~ 202 (381)
..+|+|||+|.+|+.+|..|++ .| .+|+++.+.+
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 3579999999999999999999 99 8999999876
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00027 Score=66.79 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~ 44 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLV 44 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4579999999999999999999999999999987
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.002 Score=61.44 Aligned_cols=33 Identities=39% Similarity=0.539 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~ 38 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP 38 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 579999999999999999999999999999987
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0096 Score=58.44 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 305 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADE 305 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4789999999999999999999999999999853
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=59.28 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..++++|||+|.+|+-+|..|+ .|.+|+++.+.+
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~ 41 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA 41 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence 4678999999999999999999 599999999875
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0045 Score=57.61 Aligned_cols=33 Identities=36% Similarity=0.525 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~ 39 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP 39 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 479999999999999999999999999999987
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.014 Score=55.07 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|..|+-+|..+++.|.+|.++.+.+
T Consensus 42 ~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~ 74 (510)
T 4at0_A 42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTS 74 (510)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999877
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0047 Score=47.19 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+++|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 579999999999999999999999999999875
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=60.77 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|||+|+.|+.+|..|++. .+|+++.+.+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~ 140 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERG 140 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTS
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCC
Confidence 35799999999999999999999 9999999876
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0027 Score=60.42 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhh------------CCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSS------------CGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~------------~g~~v~~i~r~~ 202 (381)
..+|+|||||..|+-+|..|++ .|.+|+++.+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 4689999999999999999999 899999999865
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0042 Score=48.45 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|+|+|..|..+|..|.+.|.+|+++|++.
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 679999999999999999999999999999875
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0041 Score=47.30 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|..|...|..|.+.|.+|+++|++.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999864
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0057 Score=46.75 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|+|+|..|..+|..|.+.|.+|+++|++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 679999999999999999999999999999975
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0082 Score=49.67 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
+..+++++|||||.+|...+..|.+.|.+|+++.+.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 457899999999999999999999999999999754
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0089 Score=45.57 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|+|+|..|..+|..|.+.|.+|+++|++.
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999864
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.032 Score=53.05 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=30.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|..|+-+|..+++ |.+|.++.+.+
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~ 40 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP 40 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence 479999999999999999999 99999999876
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.02 Score=53.53 Aligned_cols=31 Identities=16% Similarity=0.455 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
+++|||+|..|+-+|..+++.|.+|.++.+.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4899999999999999999999999999986
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.057 Score=51.92 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|..|+-+|..+++.|.+|.++.+.+
T Consensus 8 ~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~ 40 (588)
T 2wdq_A 8 FDAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (588)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 369999999999999999999999999999875
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.01 Score=47.53 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-SVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~ 36 (381)
.+|+|+|+|..|..+|..|.+. |.+|+++|++.
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 5799999999999999999999 99999999875
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0075 Score=44.19 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS-VPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~ 36 (381)
++|+|+|+|..|..++..|.+.| .+|++++++.
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 67999999999999999999999 8999999874
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0047 Score=52.75 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 59999999999999999999999999999876
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.013 Score=48.51 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||||..|...+..|.+.|.+|+|++++.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4789999999999999999999999999998753
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.091 Score=50.63 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~ 202 (381)
-+|+|||+|..|+-+|..|++.| .+|.++.+.+
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~ 40 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 36999999999999999999999 8999999875
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.014 Score=51.82 Aligned_cols=35 Identities=31% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
|+.++|+|||+|..|.+.|..|++.|.+|++++++
T Consensus 1 M~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 1 MSLTRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp -CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 66678999999999999999999999999999985
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.013 Score=50.70 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
-++|.|||+|..|...|..+++.|++|+++|++.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3689999999999999999999999999999875
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.014 Score=51.06 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|.|||+|..|...|..++..|++|+++|.++
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999864
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.034 Score=53.46 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC------CCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC------GACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~------g~~v~~i~r~~ 202 (381)
-+|+|||+|+.|+-+|..|++. |.+|.++.+.+
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~ 74 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 74 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCC
Confidence 4799999999999999999998 99999999886
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.017 Score=47.79 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|+|+|..|...|..|.+.|.+|+++|++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 59999999999999999999999999999875
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=57.64 Aligned_cols=33 Identities=36% Similarity=0.614 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhh-CCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSS-CGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~-~g~~v~~i~r~~ 202 (381)
-+|+|||+|++|+-+|..|++ .|.+|.++.+.+
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~ 66 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE 66 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999 999999999887
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.013 Score=50.09 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+.|+|||||..|...+..|.+.|.+|+||+++.
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4789999999999999999999999999999864
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.021 Score=52.88 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
.++|+|||.|.+|+++|..|.++|.+|+++|......
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~ 41 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP 41 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence 4789999999999999999999999999999876544
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.043 Score=50.91 Aligned_cols=37 Identities=35% Similarity=0.420 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++.++++.|||.|.+|+.+|..|.+.|.+|+...+++
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 3468999999999999999999999999999998765
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.024 Score=50.97 Aligned_cols=37 Identities=8% Similarity=0.219 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
=++|+|||||..|..+++.+++.|++++++|.++...
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~ 37 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQAL 37 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 0679999999999999999999999999999876443
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.021 Score=50.42 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|..|.+.|..|.+.|.+|++++++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 689999999999999999999999999999864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.052 Score=47.97 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCHHH-HHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGME-IAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e-~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++.|||.|-+|+. +|..|.++|.+|+...+++
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3589999999999997 8899999999999998775
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.024 Score=49.82 Aligned_cols=33 Identities=36% Similarity=0.428 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|..|.+.|..|.+.|.+|++++++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 689999999999999999999999999999864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.024 Score=52.68 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||.|.+|+++|..|+++|.+|++.|.+.
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 789999999999999999999999999999864
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.024 Score=50.83 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=31.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+.++|+|||+|..|...|..|.+.|.+|++++++.
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 445789999999999999999999999999999864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.042 Score=47.36 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=32.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+.++|+|.|+|..|..++..|.+.|.+|++++++.
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 666789999999999999999999999999999875
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.027 Score=52.15 Aligned_cols=35 Identities=23% Similarity=0.556 Sum_probs=31.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+ ++|.|||+|..|+..|..|++.|++|+++|++.
T Consensus 1 M~-mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 1 MS-LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp -C-CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CC-CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 53 689999999999999999999999999999874
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.033 Score=48.98 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
|+..+|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 656789999999999999999999988 999999864
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.032 Score=48.54 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|..|.+.|..|.+.|.+|++++++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 689999999999999999999999999999874
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.019 Score=51.88 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|||+|++|+-+|..|++.|.+|+++.|++
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~ 37 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 58999999999999999999999999999976
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.036 Score=51.75 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|++++|.|||.|..|...|..|++.|.+|++++++.
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~ 48 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR 48 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 667899999999999999999999999999999874
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.033 Score=48.81 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=31.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV-PNIILERE 35 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~ 35 (381)
+..+|.|||+|..|..+|..|+..|. +++++|.+
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 34689999999999999999999999 99999986
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.032 Score=48.70 Aligned_cols=33 Identities=12% Similarity=0.319 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||+|..|...|..|++.|++|+++|++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 569999999999999999999999999999874
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.038 Score=48.63 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=29.8
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 162 ENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 162 ~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.....+...+|.|||+|..|.-+|..|++.|.+|+++ +++
T Consensus 12 ~~~~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~ 51 (318)
T 3hwr_A 12 HENLYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP 51 (318)
T ss_dssp --------CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred chhhhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence 3344557889999999999999999999999999998 654
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.032 Score=49.12 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=32.1
Q ss_pred CCc-ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 1 MEE-VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 1 M~~-~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
|+. .+|+|||+|..|...|..|++.|+ +|+++|.+.
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 643 689999999999999999999998 999999864
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.044 Score=49.04 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|.|||+|..|.+.|..|++.|.+|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3689999999999999999999999999999874
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.035 Score=49.64 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=31.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
++-+|+|+|||.+|+.+|..+...|. +|+++|++.
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G 222 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG 222 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 34689999999999999999999999 899999874
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.035 Score=49.56 Aligned_cols=34 Identities=38% Similarity=0.558 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV-PNIILERE 35 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~ 35 (381)
++.+|+|+|||.+|..+|..|...|. +++++|++
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 35789999999999999999999998 79999987
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.041 Score=48.37 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
|+..+|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 666789999999999999999999888 899999764
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.023 Score=52.46 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|+|||+|+.|+-+|..|++.|.+|+++.+++
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4689999999999999999999999999999876
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.038 Score=42.83 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+++++|+|+|.+|..++..|.+.|.+|+++.|++
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3467899999999999999999999999999998876
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.039 Score=49.83 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|||+|.+|+.+|..+...|.+|+++|++.
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 579999999999999999999999999999875
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.039 Score=48.33 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||+|..|...|..|.+.|.+|++++++.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 579999999999999999999999999999864
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.053 Score=46.74 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=32.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCC---CeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSV---PNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~---~v~lie~~~ 36 (381)
|+.++|.|||+|..|.+.|..|.+.|+ +|+++|++.
T Consensus 1 M~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp -CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 666889999999999999999999998 899999875
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.021 Score=43.73 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|..|...+..|.+.|.+|++++++.
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 679999999999999999999998999999874
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.046 Score=48.12 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=31.0
Q ss_pred CCc-ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 1 MEE-VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 1 M~~-~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
|+. .+|+|||+|..|..+|..|+..|+ +|+++|.+.
T Consensus 1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 543 589999999999999999999998 899999764
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.042 Score=47.59 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+++|.|||+|..|...|..|+ .|++|+++|++.
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 378999999999999999999 999999999875
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.054 Score=50.54 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
-++|.|||+|..|...|..+++.|++|+++|++.
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3689999999999999999999999999999875
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.058 Score=43.70 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=32.8
Q ss_pred CCcccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+.++|+|.|| |..|..++..|.++|.+|++++++.
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 65578999999 9999999999999999999999875
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.058 Score=47.51 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++.|||+|.+|.-+|..|++.|.+|+++.|++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 579999999999999999999999999998865
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.053 Score=47.90 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|+|||||..|...|..|+..|+ +|+++|.+.
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 579999999999999999999998 999999874
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.046 Score=50.83 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-CC-CeEEEecCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL-SV-PNIILEREDC 37 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~-g~-~v~lie~~~~ 37 (381)
++|.|||+|..|+..|..|++. |+ +|+++|++..
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 6799999999999999999999 99 9999998864
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.036 Score=50.36 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 379999999999999999999999999999876
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.034 Score=50.03 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++++|||+|..|+++|..+++.|.+|.++.+++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 579999999999999999999999999999765
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.05 Score=47.33 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
.++|.|||.|..|...|..|++.|++|+++|++..
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 36899999999999999999999999999998863
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.057 Score=44.27 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
++|.|||+|..|.+.|..|.+.|.+|++++++..
T Consensus 20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 5799999999999999999999999999998753
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.052 Score=46.87 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||+|..|...|..|.+.|.+|++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 59999999999999999999999999999875
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.058 Score=45.43 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|.|||+|..|...|..|++.|.+|++++++.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 3789999999999999999999999999999875
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.045 Score=46.27 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|+|||+|-.|..+|..|++.|. +++|+|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 689999999999999999999998 899999875
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.068 Score=46.85 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=29.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++.|||+|.+|.-+|..|++.|.+|+++.|++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 579999999999999999999999999998864
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.049 Score=50.85 Aligned_cols=33 Identities=30% Similarity=0.650 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||+|..|+..|..|++.|.+|+++|++.
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 679999999999999999999999999999864
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.055 Score=46.04 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=32.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC----CCeEEEecCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS----VPNIILEREDC 37 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g----~~v~lie~~~~ 37 (381)
|+.++|.|||+|..|...|..|.+.| .+|+++|++..
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~ 42 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK 42 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence 65678999999999999999999998 68999998763
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.054 Score=48.43 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=31.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|.|||.|..|...|..|++.|++|+++|++.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34789999999999999999999999999999874
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.05 Score=48.70 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|||+|..|+.+|..+...|.+|+++|++.
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689999999999999999999999999999875
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.067 Score=45.85 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++++|+|+|-+|.++|..|++.|.+|++++++.
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 3679999999999999999999999999998764
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.038 Score=45.76 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEE-EecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNII-LERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~l-ie~~~ 36 (381)
++|.|||+|..|...|..|.+.|.+|++ ++++.
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 6899999999999999999999999998 77764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.058 Score=50.15 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|.|||+|..|...|..|++.|++|+++|++.
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 569999999999999999999999999999874
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.053 Score=46.91 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||.|..|...|..|++.|++|+++|++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 469999999999999999999999999999875
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.048 Score=48.85 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 3589999999999999999999999999999864
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.081 Score=46.87 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCcccEEEECC-CHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 1 MEEVPVVIVGA-GPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGa-G~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
|...+|+|||+ |..|.++|+.+...|. +++++|.+.
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~ 44 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA 44 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 44578999998 9999999999999885 899999753
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.039 Score=50.57 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence 379999999999999999999999999999875
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.062 Score=47.52 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|+|||+|..|..+|..|+..|+ +|+++|.+.
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 579999999999999999999998 999999874
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.041 Score=49.74 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999999876
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.031 Score=50.18 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 369999999999999999999999999999876
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.065 Score=47.52 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.+|.|||+|..|...|..|.+.|.+|++++++.
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3789999999999999999999999999999864
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.063 Score=47.19 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
++|+|||+|..|...|..|++.|. +|+++|++.
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 579999999999999999999998 899999864
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.07 Score=49.21 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|.|||+|..|...|..+++.|++|+++|++.
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 87 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE 87 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence 579999999999999999999999999999875
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.063 Score=46.96 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=30.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|||+|..|.+.|..|. .|.+|++++++.
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 0378999999999999999999 999999999875
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.099 Score=43.01 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||+|..|...|..|.+.|.+|++++++.
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999874
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.091 Score=49.01 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=32.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+..+|.|||+|..|...|..|++.|.+|++++++.
T Consensus 3 m~~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 38 (474)
T 2iz1_A 3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT 38 (474)
T ss_dssp CTTBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 655789999999999999999999999999999864
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.074 Score=46.55 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|+|||+|..|..+|..|+..|. +++++|.+.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 679999999999999999999986 899998764
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.075 Score=46.68 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
..+|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 3689999999999999999999987 899999764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.069 Score=46.62 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+|+|||+|..|.+.|..|+..|. +++++|.+.
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 59999999999999999999998 899999864
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.078 Score=45.18 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++++|||+|-+|.+++..|.+.|.+|+|++|+.
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999998899998875
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.042 Score=49.15 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCC-------CCeEEEecCCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLS-------VPNIILEREDC 37 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g-------~~v~lie~~~~ 37 (381)
|..++|.|||+|..|.+.|..|++.| .+|++++++..
T Consensus 6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~ 49 (354)
T 1x0v_A 6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED 49 (354)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence 44468999999999999999999998 89999998763
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.096 Score=47.81 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|||.|..|..+|..|.+.|.+|++||++.
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~ 37 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP 37 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 579999999999999999999999999999874
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.07 Score=46.72 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||.|..|...|..|++.|++|+++|++.
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999875
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.072 Score=46.77 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=30.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+..+|+|||+|..|.++|..|+..+. ++.++|.+.
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~ 41 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT 41 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 34689999999999999999998885 799998653
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.11 Score=48.47 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|...+|.|||.|..|...|..|++.|++|+++|++.
T Consensus 2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~ 37 (484)
T 4gwg_A 2 NAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 37 (484)
T ss_dssp -CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 445789999999999999999999999999999875
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.046 Score=51.33 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+++|||+|.+|+.+|..|++.|.+|+++.+++
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~ 66 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence 36789999999999999999999999999999875
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.074 Score=49.01 Aligned_cols=34 Identities=21% Similarity=0.597 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
.++.|||.|..|+..|..|++.|++|+++|++..
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 6899999999999999999999999999998864
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.049 Score=49.23 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
.+|+|||+|+.|+.+|..|++. |.+|+++.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~ 35 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKND 35 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3699999999999999999999 99999999876
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.05 E-value=0.083 Score=47.36 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|+|+|.+|..++..+...|.+|+++|++.
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 679999999999999999999999999999875
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.12 Score=45.40 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|.|||+|..|...|..|.+.|.+|+++|++.
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 679999999999999999999999999999875
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.047 Score=50.69 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|+|+|-.|...|..|...|.+|++||+++
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 679999999999999999999999999999874
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.053 Score=50.54 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~ 202 (381)
++|+|||+|.+|+-+|..|++.|. +|+++.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence 589999999999999999999998 999999865
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.085 Score=45.99 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||.|..|...|..|++.|++|+++|++.
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 679999999999999999999999999999875
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.09 Score=46.31 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=30.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCC----CCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLS----VPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g----~~v~lie~~~ 36 (381)
+.++|.|||+|..|...|..|.+.| .+|++++++.
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 3468999999999999999999999 7899999875
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.096 Score=48.57 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||+|..|...+..|.+.|.+|++++++.
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~ 45 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence 4789999999999999999999999999999864
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.074 Score=48.74 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|||.|+.|+.+|..+++.|++|+.+|-+.
T Consensus 22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 579999999999999999999999999999764
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.093 Score=46.30 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHH-HHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLA-TSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~-~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||.|.+|++ +|..|.++|.+|++.|...
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 57999999999996 7888999999999999875
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.063 Score=49.03 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCe-eEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGAC-TSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~-v~~i~r~~ 202 (381)
..+|+|||+|++|+-+|..|++.|.+ |+++.|.+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 38 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS 38 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 35899999999999999999999999 99999987
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.096 Score=45.51 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.++++|||+|.+|..+|..|.+.|. +|+|++++.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 3679999999999999999999998 899998874
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.084 Score=48.01 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|||+|.+|+.++..+...|.+|+++|++.
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 679999999999999999999999999999875
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.095 Score=46.14 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 3689999999999999999999998 799999865
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.093 Score=47.49 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|||+|.+|+.++..+...|.+|+++|++.
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 679999999999999999999999999999864
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.066 Score=49.30 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~ 202 (381)
..+|+|||+|..|+-+|..|++.|. +|+++.+.+
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~ 40 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3579999999999999999999999 999999876
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=92.72 E-value=0.083 Score=45.10 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+..+++++|||+|.+|...+..|.+.|.+|+++....
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3468999999999999999999999999999998643
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.088 Score=46.32 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
.+|+|||+|..|.++|..|+..+. +++++|.+.
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~ 40 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQGITDELVVIDVNK 40 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence 689999999999999999999887 899999754
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.09 Score=45.42 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||.|..|...|..|.+.|++|+++|++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 469999999999999999999999999999875
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.14 Score=44.63 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||.|..|...|..|++.|++|+++|++.
T Consensus 10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689999999999999999999999999999875
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.086 Score=45.48 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 3689999999999999999999998 899999875
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=92.63 E-value=0.073 Score=49.58 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=32.0
Q ss_pred CCc-ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCC
Q 035902 1 MEE-VPVVIVGAGPAGLATSACLNNL--SVPNIILERED 36 (381)
Q Consensus 1 M~~-~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~ 36 (381)
|++ ++|.|||.|..|...|..|++. |.+|+++|++.
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 543 6899999999999999999999 78999999864
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.12 Score=43.06 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=31.4
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|.|| |..|..++..|+++|.+|++++++.
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 478999999 9999999999999999999999875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.1 Score=40.18 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++++|+|+|.+|..++..|.+.|.+|+++.+.+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 5789999999999999999999999999999864
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.076 Score=47.81 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
...+|+|||+|.+|+-+|..|.+.|.+|+++.++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence 4679999999999999999999999999999988
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.058 Score=48.04 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC------CeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG------ACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g------~~v~~i~r~~ 202 (381)
+|+|||+|.+|+-+|..|++.| .+|+++.+..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6899999999999999999998 8999999875
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.12 Score=44.30 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
++++|||+|-+|.++|..|.+.|. +|+|++|+.
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 151 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTM 151 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 689999999999999999999998 899999875
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.064 Score=50.50 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=34.6
Q ss_pred hhhhhhcCCCeEEccC--cceEeCC--eEEEcCCcEeeccEEEEecC
Q 035902 269 GAMDKIRKGEIQVFPS--ITSINRN--EVEFENGKIEEFEAIIFATG 311 (381)
Q Consensus 269 ~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~~g~~~~~D~vi~a~G 311 (381)
.+.+.+.+.+++++.+ |+++..+ .+++.+|+++.+|.||.++.
T Consensus 227 ~l~~~l~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P 273 (513)
T 4gde_A 227 AVANTLPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMA 273 (513)
T ss_dssp HHHHTSCGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSC
T ss_pred HHHHHHHhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCC
Confidence 4455567778898887 8888764 68889999999999998864
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.53 E-value=0.091 Score=45.96 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS--VPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~ 36 (381)
++|+|||+|..|.+.|..|++.| .+|+++|++.
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 46999999999999999999998 6899999864
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.081 Score=48.81 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||+|..|...|..|++.|.+|+++|++.
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999864
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.073 Score=48.78 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~ 202 (381)
...+++|||+|.+|+-+|..|++.| .+|+++.+++
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~ 40 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD 40 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 3568999999999999999999999 8999999865
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.093 Score=44.96 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++++|+|+|-+|.++|..|.+.|.+|++++++.
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3679999999999999999999999999999874
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.12 Score=44.48 Aligned_cols=33 Identities=18% Similarity=0.067 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|.|||..|..++..|.++|.+|+++.++.
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 679999999999999999999999999999875
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.12 Score=46.51 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|+|+|..|..+|..++..|.+|+++|++.
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 679999999999999999999999999999874
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.1 Score=47.67 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||.|..|+..|..|++ |.+|+++|++.
T Consensus 37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 579999999999999999998 99999999875
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.075 Score=47.75 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||+|..|...|..|.+.|.+|++++++.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999999999999999999999999864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.13 Score=45.05 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
++|.|||.|..|.+.|..|.+.|. +|+++|++.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 679999999999999999999999 899999875
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.15 Score=47.71 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
..+|.|||.|..|...|..|++.|++|++++++.
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3789999999999999999999999999999875
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.089 Score=49.25 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~ 44 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEART 44 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 35789999999999999999999999999998765
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.11 Score=45.65 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS-VPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~ 36 (381)
++|.|||.|..|...|..|++.| .+|+++|++.
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 57999999999999999999999 9999999875
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.11 Score=45.68 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||.|..|...|..|++.|++|+++|++.
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 579999999999999999999999999999875
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.12 Score=45.17 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNL--SVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~ 36 (381)
+|+|||+|..|...|..|++. +.+|+++|.+.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 599999999999999999985 67999999874
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.13 Score=46.44 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
..+|+|||+|..|..+|..+...|.+|+++|++.
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3679999999999999999999999999999874
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.22 Score=46.67 Aligned_cols=56 Identities=4% Similarity=0.025 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEE-EEEeecCCCceEEEEeCEEEEccCCC
Q 035902 77 ISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWI-IVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
..+.+.+.+.+++.|.+++++++|++|..++ +..+ |++.++ +++.||.||.+++..
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~--~~~~gV~~~~g-----~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETTG--NKIEAVHLEDG-----RRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTS-----CEEECSCEEECCC--
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEeeC--CeEEEEEecCC-----cEEEcCEEEECCCHH
Confidence 4577788888888999999999999999876 4443 777777 789999999998876
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.13 Score=41.98 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=29.6
Q ss_pred cEEEEC-CCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVG-AGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIG-aG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+||| +|..|...|..|.+.|.+|++++++.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 599999 99999999999999999999999864
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=92.15 E-value=0.15 Score=43.94 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.++++|+|+|-+|.+++..|++.|. +|+|++|+.
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~ 161 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 3689999999999999999999998 699998874
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.16 Score=44.42 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.++++|+|+|-+|.++|..|++.|. +|+|++|+.
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~ 188 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD 188 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence 3689999999999999999999998 799999873
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=92.11 E-value=0.11 Score=43.85 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 3689999999999999999999998 789999864
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.073 Score=50.08 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~ 36 (501)
T 2qcu_A 4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD 36 (501)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 479999999999999999999999999999865
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.17 Score=44.82 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=31.1
Q ss_pred CCcccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+.++|+|.|| |..|..++..|.+.|.+|+++.++.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 44468999999 9999999999999999999999875
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.07 E-value=0.14 Score=44.06 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
++|.|||+|..|...|..|.+.|. +|+++|++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 36 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 469999999999999999999998 899999864
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.13 Score=44.38 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.|||+|..|...|..|.+ |.+|+++|++.
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 469999999999999999999 99999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 381 | ||||
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 8e-16 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 2e-13 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 2e-11 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 3e-11 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 3e-04 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 1e-06 | |
| d2gmha1 | 380 | c.3.1.2 (A:4-236,A:336-482) Electron transfer flav | 5e-06 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 3e-05 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 8e-05 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 8e-05 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 2e-04 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 2e-04 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 7e-04 | |
| d1pn0a1 | 360 | c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So | 8e-04 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 0.001 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 0.001 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 0.001 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 0.002 | |
| d1trba2 | 126 | c.3.1.5 (A:119-244) Thioredoxin reductase {Escheri | 0.002 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 0.002 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 0.002 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 0.002 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 0.003 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 0.003 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 0.004 |
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 74.9 bits (183), Expect = 8e-16
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 11/142 (7%)
Query: 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCEL 61
EEV V++VGAG +GL L L ++E +W Y + +
Sbjct: 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCY 65
Query: 62 PHMPFPSRTPTFVP----RISFINYVDNYVSQMGI--NPRYHRSVESASYDENAKAWIIV 115
+ + + + Y++ + + +H +V +A++DE W +
Sbjct: 66 SFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVD 125
Query: 116 AKNTALDAYEEYVARYLVVATG 137
+ + ARYL++A+G
Sbjct: 126 TNH-----GDRIRARYLIMASG 142
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 64.3 bits (156), Expect = 2e-13
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 142 IPEVPGLGSFE----GEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSI 197
IP + GL + G +HSS + F+G++VLVVG +S ++ L+
Sbjct: 1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIY 60
Query: 198 VVRGPVHVLTREIVFAGMLLLKFLP 222
+ E + + KF P
Sbjct: 61 QSLLGGGDIQNESLQQVPEITKFDP 85
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 62.4 bits (150), Expect = 2e-11
Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 60/239 (25%)
Query: 6 VVIVGAGPAGLATSACL--NNLSVPNIILEREDCSASLW--------------------- 42
+ I+GAGP+GL T+ L + ER +W
Sbjct: 7 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 66
Query: 43 ------------KKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQM 90
Y ++ + + F +T F R + Y Y +
Sbjct: 67 EPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL 126
Query: 91 GINPRYHRSVESASYDENAKAWIIVAKNTALDAYE-EYVARYLVVATG----------EN 139
+ V + +W++ K T + + + + + G +
Sbjct: 127 LPFIKLATDVLDIEKKDG--SWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYS 184
Query: 140 GLIPEVPGLGSFEGE-----------YMHSSKYENGG-KFIGKNVLVVGCGNSGMEIAY 186
P + L S E + Y H + F+G + VV S + A+
Sbjct: 185 VPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAF 243
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 60.6 bits (145), Expect = 3e-11
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 142 IPEVPGLGSFEGEYMHSSKYE-NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGAC 194
+P PGL F G H+ + F G+ V V+G G+SG++++ ++ A
Sbjct: 4 LPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 57
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 232 MLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINR 290
+ +K++ ER + F ++ + + I +I
Sbjct: 155 IRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP 214
Query: 291 NEVEFENGKIEEFEAIIFATGY 312
V + E ++++ ATG+
Sbjct: 215 RGVRTSEREYE-LDSLVLATGF 235
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.9 bits (110), Expect = 1e-06
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 30/163 (18%)
Query: 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRA------------------ 46
V I+GAGP+GL L+ + N+ILER+ L + RA
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63
Query: 47 --------YDRMKLHLAKQFCELPHMPFP-SRTPTFVPRISFINYVDNYVSQMGINPRYH 97
++ +++ A Q + +T T + + G Y
Sbjct: 64 RMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQ 123
Query: 98 RSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140
+ + + ++ ++ Y+ G +G
Sbjct: 124 AAEVRLHDLQGERPYVTFERD---GERLRLDCDYIAGCDGFHG 163
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Score = 45.6 bits (107), Expect = 5e-06
Identities = 32/195 (16%), Positives = 57/195 (29%), Gaps = 24/195 (12%)
Query: 2 EEVPVVIVGAGPAGLATSACL--------NNLSVPNIILERED------CSASLWKKRAY 47
EE VVIVGAGPAGL+ + L +L V ++E+ S + RA+
Sbjct: 31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRV--CLVEKAAHIGAHTLSGACLDPRAF 88
Query: 48 DRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107
+ + + P TP R + + +
Sbjct: 89 EELFPDWKE-------KGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLG 141
Query: 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKF 167
+ +W+ A ++ E+G + + + G
Sbjct: 142 HLVSWMGEQAEALGVEVYPGYAAAEILFH-EDGSVKGIATNDVGIQKDGAPKTTFERGLE 200
Query: 168 IGKNVLVVGCGNSGM 182
+ V + G G
Sbjct: 201 LHAKVTIFAEGCHGH 215
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 43.0 bits (100), Expect = 3e-05
Identities = 22/163 (13%), Positives = 43/163 (26%), Gaps = 35/163 (21%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILERED---------------------------CS 38
+I+GAG AGL +A L L + +
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66
Query: 39 ASLWKKRAYDRMKLHLAKQFCELPHMPFPSRT----PTFVPRISFINYVDNYVSQMGINP 94
+ K A R + + + + + + + G
Sbjct: 67 NPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI 126
Query: 95 RYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137
V +N + V + + ++ + L+VATG
Sbjct: 127 LLRSEVSQVERIQNDEKVRFVLQVNS----TQWQCKNLIVATG 165
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (95), Expect = 8e-05
Identities = 30/207 (14%), Positives = 64/207 (30%), Gaps = 13/207 (6%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP 65
+ +G G G+A+ ++E ++ + + + A Q E HM
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64
Query: 66 FPSRTPTF-VPRISF---INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTAL 121
P + + ++ I Y+ ++ + Y + + D V T
Sbjct: 65 GPDYGFDTTINKFNWETLIASRTAYIDRI--HTSYENVLGKNNVDVIKGFARFVDAKTLE 122
Query: 122 DAYEEYVARYLVVATGENGLIPEVP---GLGSFEGEYMHSSKY----ENGGKFIGKNVLV 174
E A ++++ATG P P + + K + + +
Sbjct: 123 VNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYA 182
Query: 175 VGCGNSGMEIAYDLSSCGACTSIVVRG 201
VG +E+ + G S +
Sbjct: 183 VGDNTGAVELTPVAVAAGRRLSERLFN 209
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 41.6 bits (96), Expect = 8e-05
Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 7/116 (6%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILERED-------CSASLWKKRAYDRMKLHLAKQF 58
+ +VG +GL + L + V + ER + + + ++ +
Sbjct: 7 IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDS 66
Query: 59 CELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWII 114
+P R+ + + S I + Y + +
Sbjct: 67 ISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGL 122
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 20/212 (9%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNI-ILERED------CSASLWKK--RAYDRMKL--HL 54
++I GAG GL+ + L+ + + +LE ++ A + L L
Sbjct: 4 ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPAL 63
Query: 55 AKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWII 114
A + + ++ V N Q I+ + + A+ E
Sbjct: 64 AATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRE-RLGQQA 122
Query: 115 VAKNTALDAYEEYVARYLVVATGENGLIPEVP--------GLGSFEGEYMHSSKYENGGK 166
V ++ EE R L+ A +G + G+ S ++H +
Sbjct: 123 VRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLRDP 182
Query: 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIV 198
+ + Y + + GA +I+
Sbjct: 183 LPHWGRGRITLLGDAAHLMYPMGANGASQAIL 214
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 39.8 bits (91), Expect = 2e-04
Identities = 22/195 (11%), Positives = 44/195 (22%), Gaps = 35/195 (17%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP 65
V+IVGAGP+G + L + + + + A
Sbjct: 52 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGE------------ 99
Query: 66 FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE 125
+ + K D
Sbjct: 100 -----------------------WSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVL 136
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
+Y A +++ATG + + K L+ +G +A
Sbjct: 137 QYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVA 196
Query: 186 YDLSSCGACTSIVVR 200
++ +I +
Sbjct: 197 REIEEANPQIAIPYK 211
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 7e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILERED 36
V+I+G+G +GLA + L + + +LE D
Sbjct: 8 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 2 EEVPVVIVGAGPAGLATSACLNNLS-----VPNIILERED 36
V+IVGAGPAGL + L+ + I+++
Sbjct: 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 45
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 38.1 bits (87), Expect = 0.001
Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 44/179 (24%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILERED----------------------------- 36
V+++G GP+GL + ++L++ +
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64
Query: 37 -----CSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMG 91
S + + + +L P S ++ + + +G
Sbjct: 65 PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLG 124
Query: 92 INPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGS 150
+ R + VE+ Y+ +I+ ++V+A G VP GS
Sbjct: 125 VKIRTNTPVETIEYENGQTKAVILQTGE------VLETNHVVIAVGGKS----VPQTGS 173
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 37.4 bits (85), Expect = 0.001
Identities = 17/99 (17%), Positives = 34/99 (34%)
Query: 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDF 228
NV++VG G +G+E+A+ L + G +I + G V+ + L +
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 229 IVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTID 267
+ + G + + I +D
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALD 101
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 37.9 bits (86), Expect = 0.001
Identities = 41/362 (11%), Positives = 90/362 (24%), Gaps = 27/362 (7%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQF-CELPHM 64
V ++GAG +GLA + L + + E E +A +++ +
Sbjct: 4 VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG--------KAGGKLRSVSQDGLIWDEGAN 55
Query: 65 PFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAY 124
I + + + N RY + + +I + + +
Sbjct: 56 TMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSK 115
Query: 125 EEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEI 184
+ + ++ + + + E + + GK + ++ +
Sbjct: 116 LQMLLEPILWKNKKLSQVSD-------SHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGD 168
Query: 185 AYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKY 244
LS + + L K + + + F
Sbjct: 169 PDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLG 228
Query: 245 GLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFE 304
G++ V + + + SI + E F+
Sbjct: 229 GMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSW--SIISASPHKRQSEEESFD 286
Query: 305 AIIFATGYKSTVRNWLKRADKDFFDE---------YGMPKRNCPNHWKGENGLYCAGFSR 355
A+I + + F Y K GL+ AG R
Sbjct: 287 AVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHR 346
Query: 356 TG 357
G
Sbjct: 347 GG 348
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 37.6 bits (86), Expect = 0.002
Identities = 29/231 (12%), Positives = 64/231 (27%), Gaps = 24/231 (10%)
Query: 3 EVPVVIVGAGPAGLATSACL-NNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCEL 61
E VV+VGAG AGL+ + + N +V I+E+ + + K
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLF 92
Query: 62 ------PHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIV 115
+ + + + +++ + + E N ++
Sbjct: 93 LDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVT 152
Query: 116 A--------KNTALDAYEEYVARYLVVATGENGL-IPEVPGLGSFEGEYMHSSKYENGGK 166
+ A+ +V + G +G G H +
Sbjct: 153 NWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDM 212
Query: 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL 217
++ +V E+ + G + + P F M++
Sbjct: 213 NTAEDAIVRLTR----EVVPGMIVTGMEVAEIDGAP----RMGPTFGAMMI 255
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 36.2 bits (83), Expect = 0.002
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 145 VPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202
+P +F+G + + +G + + V V+G GN+ +E A LS+ + ++ R
Sbjct: 3 LPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 60
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 36.4 bits (83), Expect = 0.002
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 142 IPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVR 200
P + G+ + + +G V ++GCG G + A LS G TS +
Sbjct: 4 TPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIA 60
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 37.4 bits (85), Expect = 0.002
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILERED 36
V +VG G +GLA + L + ++LE
Sbjct: 3 VAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 37.4 bits (85), Expect = 0.002
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILERED 36
VVIVGAG AGL+ + L +LE +
Sbjct: 33 VVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 36.9 bits (83), Expect = 0.003
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNI-ILERED 36
V++VGAG +G++ + L+ + ++ ILE D
Sbjct: 3 VIVVGAGMSGISAAKRLSEAGITDLLILEATD 34
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILERED 36
VV+VG G +G+A + L++ + ++LE D
Sbjct: 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 35.9 bits (81), Expect = 0.004
Identities = 18/184 (9%), Positives = 45/184 (24%), Gaps = 8/184 (4%)
Query: 6 VVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMP 65
V+IVG+GPAG A + + ++ L ++ +++ E +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILD----TVDIENYISVPKTEGQKLA 59
Query: 66 FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYE 125
+ ++ +D+ + I + A
Sbjct: 60 GALKV---HVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLP 116
Query: 126 EYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIA 185
V G I + + ++ + + + +
Sbjct: 117 NTNWLEGAVERNRMGEIII-DAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 175
Query: 186 YDLS 189
L
Sbjct: 176 DYLI 179
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 381 | |||
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.85 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.81 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.76 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.74 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.74 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.73 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.71 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.68 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.68 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.67 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.63 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.62 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.62 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.61 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.61 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.6 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.59 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.59 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.59 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.57 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.57 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.56 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.55 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.51 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.51 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.51 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.49 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.48 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.48 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.48 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.46 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.44 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.44 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.43 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.43 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.43 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.43 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.43 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.42 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.42 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.41 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.41 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.41 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.4 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.4 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.39 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.39 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.36 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.35 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.35 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.35 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.34 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.33 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.33 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.32 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.32 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.31 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.31 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.31 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.3 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.3 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.3 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.29 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.29 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.29 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.28 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.28 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.26 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.26 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.25 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.25 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.24 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.24 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.24 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.22 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.21 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.21 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 99.2 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 99.2 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 99.19 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.18 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.17 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.17 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.15 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.15 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.14 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.14 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.14 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 99.13 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.11 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.07 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.05 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.04 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.04 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 99.02 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.02 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 99.01 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.01 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.98 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.9 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.89 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.88 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.86 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.83 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.8 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.78 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.77 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.74 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.74 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.73 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.71 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.71 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.7 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.69 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.66 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.65 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.64 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.64 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.58 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.58 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 98.57 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.48 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.46 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.45 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 98.43 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.4 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.35 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.33 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.32 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.31 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.23 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.17 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.16 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 98.16 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.13 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.11 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.1 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.08 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.04 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.99 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.94 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 97.92 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.92 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 97.87 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.82 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.68 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.68 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.64 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.64 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.6 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.58 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.58 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.56 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 97.51 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 97.47 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.45 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.45 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.44 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 97.39 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.38 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.34 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 97.26 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.24 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.15 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.05 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.03 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 96.99 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.88 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.8 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 96.77 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.73 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.73 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 96.72 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.65 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.64 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 96.61 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.59 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.53 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.52 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.52 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.46 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.45 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.44 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.4 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.36 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.25 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.16 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.05 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.91 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 95.87 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.87 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.82 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.8 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.74 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 95.74 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.73 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.71 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.7 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.64 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.63 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.62 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.41 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.37 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 95.35 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.31 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 95.28 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.26 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.22 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.09 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 95.08 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.03 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.01 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.95 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 94.95 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 94.9 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.89 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 94.87 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.8 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 94.77 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 94.72 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.65 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 94.61 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.48 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.47 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 94.46 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 94.39 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.38 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.35 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.25 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.24 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.16 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 94.13 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.13 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 94.11 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.04 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 94.01 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 93.98 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.96 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.9 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.79 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.67 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 93.63 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 93.47 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 93.3 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.27 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.17 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.1 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.04 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.85 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 92.71 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.66 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.45 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 92.43 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.2 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 91.91 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 91.87 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.85 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 91.83 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.69 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 91.67 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.64 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.52 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 91.47 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.42 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 91.34 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.15 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 91.11 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 91.04 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.04 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.04 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.02 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.91 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 90.73 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 90.54 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.47 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 90.26 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.08 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 90.06 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 90.01 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.87 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 89.81 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 89.77 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 89.43 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.42 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 89.4 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.26 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.02 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 88.99 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 88.97 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.72 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.68 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 88.62 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 88.61 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 88.49 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 88.42 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 88.28 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 88.11 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.11 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.97 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 87.89 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.83 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 87.67 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 87.65 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 87.56 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 87.46 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 87.09 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 86.74 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 86.73 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 86.65 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 86.47 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 86.43 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 86.3 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.13 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 86.11 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 85.87 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 85.77 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 85.53 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.44 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 85.32 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 85.31 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 85.3 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 85.09 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 85.05 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 85.02 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 84.77 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 84.66 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 84.44 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 84.19 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 84.14 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 83.79 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 83.78 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 83.53 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 83.41 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 83.27 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 83.24 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.22 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 83.12 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 83.06 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 82.99 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 82.94 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 82.93 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 82.9 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 82.76 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 82.76 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 82.34 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 82.26 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 82.23 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 82.18 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 82.07 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 82.05 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 81.96 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 81.8 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 81.7 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 81.52 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 81.36 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 81.31 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 81.17 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 81.12 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 81.11 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 80.92 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 80.88 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 80.83 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 80.65 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 80.61 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 80.61 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 80.49 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 80.44 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.3 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 80.21 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 80.18 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 80.12 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 80.11 |
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.85 E-value=6e-22 Score=172.83 Aligned_cols=142 Identities=20% Similarity=0.366 Sum_probs=121.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCC----CCCCCCCCHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFP----SRTPTFVPRIS 78 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 78 (381)
++||+|||||++|+++|++|++.|++++|+|+++.+||+|..+.|+++.++.+...+.++..+.+ .+...++++.+
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e 86 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 86 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence 47999999999999999999999999999999999999999888999888877776665544311 23345778999
Q ss_pred HHHHHHHHHHHhCC--ccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC--CCCCCCCCCC
Q 035902 79 FINYVDNYVSQMGI--NPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN--GLIPEVPGLG 149 (381)
Q Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~--~~~~~~~g~~ 149 (381)
+.+|++.+++++++ .++++++|+++..++..+.|.|.+.++ ..+++|+||+|||.. |..|.+++++
T Consensus 87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~-----~~~~~~~~i~atG~ls~~~~p~~~~~~ 156 (298)
T d1w4xa1 87 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG-----DRIRARYLIMASGQLSDALTGALFKID 156 (298)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC-----CEEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred HHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccc-----cccccceEEEeecccccccCCcccccc
Confidence 99999999999998 489999999999887778999999876 679999999999964 7777777765
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.81 E-value=2.7e-19 Score=159.60 Aligned_cols=143 Identities=17% Similarity=0.269 Sum_probs=111.3
Q ss_pred CCc-ccEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeee-------------------------
Q 035902 1 MEE-VPVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKL------------------------- 52 (381)
Q Consensus 1 M~~-~~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~------------------------- 52 (381)
|.. ++|+|||||++|++||..|++++ .+|+|+|+++.+||.|....+.....
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 80 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 80 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccc
Confidence 544 78999999999999999998876 49999999999999997654333221
Q ss_pred --------ecCCcccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCc-
Q 035902 53 --------HLAKQFCELPHMPFPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDA- 123 (381)
Q Consensus 53 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~- 123 (381)
..+.....+...+++.+.+.++++.++.+|++.+++.++..++++++|++++.++ +.|.|++.++..++
T Consensus 81 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~--~~w~Vt~~~~~~~~~ 158 (335)
T d2gv8a1 81 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSWVVTYKGTKAGSP 158 (335)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET--TEEEEEEEESSTTCC
T ss_pred ccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecC--CEEEEEEEecCCCCe
Confidence 2222222334455556667788999999999999998888899999999999876 78999998876543
Q ss_pred eEEEEeCEEEEccCCC--CCCCCC
Q 035902 124 YEEYVARYLVVATGEN--GLIPEV 145 (381)
Q Consensus 124 ~~~~~~d~vIlAtG~~--~~~~~~ 145 (381)
.....||+||+|||.. |..|.+
T Consensus 159 ~~~~~~d~VI~AtG~~s~p~~~~~ 182 (335)
T d2gv8a1 159 ISKDIFDAVSICNGHYEVPYTGYL 182 (335)
T ss_dssp EEEEEESEEEECCCSSSSBCCCBC
T ss_pred EEEEEeeEEEEcccccccceeccc
Confidence 3457899999999987 666554
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.76 E-value=2e-18 Score=144.55 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=65.1
Q ss_pred CCcEeeccEEEEecC-----CCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 297 NGKIEEFEAIIFATG-----YKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G-----~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
++..+.+|.||+||| +.|+++.+.. +..++ +++.|++.+| +.++|+.|+|||+|||.+++. .|..+|+.
T Consensus 131 ~~~~~~a~~VIiATGs~~~gr~p~~~~l~l-~~~gv~~~~~G~i~vd-~~~~T~v~gi~A~GDv~~g~~l~~~A~~~g~~ 208 (221)
T d1dxla1 131 ENTVVKGKHIIIATGSDVKGRTPFTSGLNL-DKIGVETDKLGRILVN-ERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVA 208 (221)
T ss_dssp CCEEEECSEEEECCCEEECCEEECCTTSCC-TTTTCCBCSSSCBCCC-TTCBCSSTTEEECSTTSSSCCCHHHHHHHHHH
T ss_pred cccccccceEEEeECCCccCccccCCCCCh-HhcCceEcCCCcEEeC-CCcccCCCCEEEEeccCCCcccHHHHHHHHHH
Confidence 345789999999998 5677765543 54777 8999999999 578899999999999998876 89999999
Q ss_pred HHHHhhhcc
Q 035902 368 IANDINLAL 376 (381)
Q Consensus 368 ~a~~i~~~l 376 (381)
+|++|++..
T Consensus 209 aa~~i~g~~ 217 (221)
T d1dxla1 209 CVEYLAGKV 217 (221)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHcCCC
Confidence 999998654
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.4e-19 Score=148.60 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=48.4
Q ss_pred Ccc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhccccCCC
Q 035902 325 KDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLALTDHQV 381 (381)
Q Consensus 325 ~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l~~~~~ 381 (381)
.++ ++++|++.+| +.++|+.|+|||+||+.+.++ .|..+|+.+|++|.+....+++
T Consensus 161 ~gv~~~~~G~I~vd-~~~~T~~~gvyA~GDv~~~~~l~~~A~~~G~~aa~~~~~~~~~~~~ 220 (221)
T d3grsa1 161 LGIQTDDKGHIIVD-EFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKL 220 (221)
T ss_dssp TTCCBCTTSCBCCC-TTCBCSSTTEEECGGGGTSSCCHHHHHHHHHHHHHHHHSCCTTCCC
T ss_pred cCcEECCCccEEeC-CCccccCCcEEEEEEccCCcCcHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 455 7889999999 678899999999999998765 8999999999999998776654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.74 E-value=9.2e-19 Score=142.06 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=108.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERP 249 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (381)
.+|+|||+|++|+|+|..|.+.|.+++++.+.+....+.....+...+.... ....+
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~~--- 60 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHG--------------------DAEKI--- 60 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHC--------------------CGGGS---
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhh--------------------hhhhH---
Confidence 4699999999999999999999988877777662222211111111111111 00000
Q ss_pred CCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcchhcc-c-c
Q 035902 250 KKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVRNWLK-R-A 323 (381)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~-~ 323 (381)
........+++++.+ +++++.+ .+.+.+|+++++|.+++|+|.+|+...... + .
T Consensus 61 --------------------~~~~~~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~ 120 (183)
T d1d7ya1 61 --------------------RLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALAR 120 (183)
T ss_dssp --------------------BCCGGGSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHH
T ss_pred --------------------HHHHhhcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcccccccccccc
Confidence 122334567888776 7888765 688899999999999999999998743211 0 1
Q ss_pred CCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhh
Q 035902 324 DKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINL 374 (381)
Q Consensus 324 ~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~ 374 (381)
..+ ++.++.+.+| +.++++.|+|||+|||+..+ ..|..||+.+|+||.+
T Consensus 121 ~~g-l~~~~~I~vd-~~~~ts~~~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 121 AAG-LACDDGIFVD-AYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp HTT-CCBSSSEECC-TTCBCSSTTEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred eee-EeeCCcEEec-cceeccccccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 123 3445568888 56778999999999996532 1589999999999964
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.8e-19 Score=143.50 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=99.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||||++||..|+++|++|+|||+.+.+||.+.... ..+......++.++
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~----------------------~~p~~~~~~~~~~~ 100 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK----------------------QIPGKEEFYETLRY 100 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT----------------------TSTTCTTHHHHHHH
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEE----------------------eCcccchHHHHHHH
Confidence 48999999999999999999999999999999999998654210 11334455688899
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
+.+.+++++++++++++|+. + ....+|.||+|||+.|+.+.+|+.+
T Consensus 101 ~~~~~~~~gV~i~l~~~Vt~----~-----------------~~~~~d~vilAtG~~~~~~~~pg~~------------- 146 (179)
T d1ps9a3 101 YRRMIEVTGVTLKLNHTVTA----D-----------------QLQAFDETILASGIPNRALAQPLID------------- 146 (179)
T ss_dssp HHHHHHHHTCEEEESCCCCS----S-----------------SSCCSSEEEECCCEECCTTHHHHHT-------------
T ss_pred HHHhhhcCCeEEEeCCEEcc----c-----------------ccccceeEEEeecCCCcccccchhc-------------
Confidence 99999999999999887631 0 1245899999999988766555432
Q ss_pred CCCCCCCCeEEEEcCCCCHHHH-HHHHhhCCCe
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEI-AYDLSSCGAC 194 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~-a~~l~~~g~~ 194 (381)
.+++++|+|+|.+++++ +......|.+
T Consensus 147 -----~g~~v~vigggd~a~~~~~~~Av~~G~~ 174 (179)
T d1ps9a3 147 -----SGKTVHLIGGCDVAMELDARRAIAQGTR 174 (179)
T ss_dssp -----TTCCEEECGGGTCCSSCCHHHHHHHHHH
T ss_pred -----cCCEEEEECCcHhhhhccchhhhhccCE
Confidence 37899999999999886 3333344433
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.71 E-value=7.6e-21 Score=160.64 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=103.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+||||||||+++|..|+++|++|+|+|+++.+||.|..... .+..........+
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~----------------------~~~~~~~~~~~~~ 106 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA----------------------LPGLGEWSYHRDY 106 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT----------------------STTCGGGGHHHHH
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccc----------------------cceeecccccchh
Confidence 389999999999999999999999999999999999997754211 0111111223333
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCcceeecCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEGEYMHSSKYE 162 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (381)
......+........ .+.... .. +...+. .++.||+||+|||+.+..|.+++.........+.....
T Consensus 107 ~~~~~~~~~~~~~~~----~~~~~~--~~--~~~~~~-----~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (233)
T d1djqa3 107 RETQITKLLKKNKES----QLALGQ--KP--MTADDV-----LQYGADKVIIATGASECTLWNELKARESEWAENDIKGI 173 (233)
T ss_dssp HHHHHHHHHTTCTTC----EEECSC--CC--CCHHHH-----HTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEE
T ss_pred HHHHHHHHhhcceee----eeeccc--cc--ccchhh-----hhhccceeeeccCCCcccccccccccccccchhhhhhh
Confidence 333333322111111 011110 11 222221 35689999999999876664433221111111222222
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 163 NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 163 ~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
......+++++|+|+|.+|+|+|..|++.|.+|+++.|++
T Consensus 174 ~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~ 213 (233)
T d1djqa3 174 YLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRE 213 (233)
T ss_dssp EECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCC
T ss_pred hhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecc
Confidence 2223357899999999999999999999999999999998
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.68 E-value=2e-16 Score=128.94 Aligned_cols=115 Identities=12% Similarity=0.188 Sum_probs=78.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+||||||+|++||..|++.|.+++|+|+........... ............++......++...
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~el~~~ 72 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ------------LTTTTDVENFPGFPEGILGVELTDK 72 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG------------GGGCSEECCSTTCTTCEEHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccc------------cccchhhhccccccccccchHHHHH
Confidence 4999999999999999999999999999999765322110000 0000000000122334557889998
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
+++.++++++++... +|.+++... +.+.+.... ..+.+|.+++++|.
T Consensus 73 ~~~q~~~~g~~i~~~-~V~~~~~~~--~~~~v~~~~------~~~~~~~~~~a~g~ 119 (192)
T d1vdca1 73 FRKQSERFGTTIFTE-TVTKVDFSS--KPFKLFTDS------KAILADAVILAIGA 119 (192)
T ss_dssp HHHHHHHTTCEEECC-CCCEEECSS--SSEEEECSS------EEEEEEEEEECCCE
T ss_pred HHHHHHhhcceeeee-eEEeccccc--CcEEecccc------eeeeeeeEEEEeee
Confidence 888889999887654 577777654 445565443 57889999999998
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.68 E-value=5.3e-17 Score=129.43 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=105.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERP 249 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (381)
.|++|||+|++|+|+|..|++ +.+|+++.|.+...... ..+...+...++ .
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~--~~~~~~~~~~~~--------------------~------ 51 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSK--PMLSHYIAGFIP--------------------R------ 51 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCS--TTHHHHHTTSSC--------------------G------
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccc--cchhhhhhhhhh--------------------h------
Confidence 379999999999999999976 66999999876211111 011111111110 0
Q ss_pred CCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-eEEEcCCcEeeccEEEEecCCCCCcchhccccCCc
Q 035902 250 KKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKD 326 (381)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~ 326 (381)
........+.+++.+++++.+ ++.++.+ .+.+.++.++++|.+++|+|.+|+. +.. . .+
T Consensus 52 --------------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~~--~~~-~-~g 113 (167)
T d1xhca1 52 --------------NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVD--LAR-R-SG 113 (167)
T ss_dssp --------------GGGCSSCHHHHHHHTEEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECCH--HHH-H-TT
T ss_pred --------------hhhhHHHHHHHHhccceeeeeccccccccccccccccccccccceeEEEEEecCCc--hhh-h-cC
Confidence 000111134455667888876 8888755 5777888899999999999998763 333 2 45
Q ss_pred ccccCCCCCCCCCCCCCCCCcEEEEeccccccc-------CccHHHHHHHHHhhhc
Q 035902 327 FFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH-------GISIDAKNIANDINLA 375 (381)
Q Consensus 327 ~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~-------~a~~~a~~~a~~i~~~ 375 (381)
+-...+ +.++ ..++++.|+||++|||..... .|+.||+.+|++|.++
T Consensus 114 l~~~~~-i~v~-~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 114 IHTGRG-ILID-DNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp CCBSSS-EECC-TTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred ceeCCc-eeec-cccEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHHHcCCC
Confidence 533333 6676 567789999999999975422 7888999999998763
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=3.2e-17 Score=133.00 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=106.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
.+++|+|||+|++|+|+|..|.+.|.+++++.+.+....+.....+... +.
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~-----------------------------~~ 52 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKA-----------------------------YL 52 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTT-----------------------------TT
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHH-----------------------------HH
Confidence 4689999999999999999999999998888877732222211100000 00
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcchhcccc
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVRNWLKRA 323 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~ 323 (381)
..... .....................+ +..++.+ .+...++.++++|.+++++|.+|+.+..-.+.
T Consensus 53 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~ 122 (185)
T d1q1ra1 53 AGKAT----------AESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122 (185)
T ss_dssp TTCSC----------SGGGBSSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHH
T ss_pred Hhhhh----------hhhhhhhhhhhhcccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHH
Confidence 00000 0000000122233344444444 4445544 57788899999999999999988765432102
Q ss_pred CCcccccCCCCCCCCCCCCCCCCcEEEEecccccc-------------cCccHHHHHHHHHhhh
Q 035902 324 DKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGL-------------HGISIDAKNIANDINL 374 (381)
Q Consensus 324 ~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~-------------~~a~~~a~~~a~~i~~ 374 (381)
..+ +..+|.+.+| +.++++.|+||++|||...+ ..|..||+.+|++|++
T Consensus 123 ~~~-~~~~~~i~Vd-~~~~ts~~~vya~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G 184 (185)
T d1q1ra1 123 AAG-LQVDNGIVIN-EHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCG 184 (185)
T ss_dssp HTT-CCBSSSEECC-TTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred hCC-ccccCccccC-CccccchhhhhcchhhhccccccCCcccchhhHHHHHHHHHHHHHHccC
Confidence 133 4456778888 57778999999999996542 1799999999999976
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.63 E-value=4.3e-16 Score=127.66 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=109.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
+|+|||+|++|+|+|..|.+++ .+|+++.|.+ .+ +.....+...+...+. .
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~-~~-~~~~~~~~~~l~~~~~--------------------~----- 54 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD-FI-SFLSAGMQLYLEGKVK--------------------D----- 54 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS-SS-SBCGGGHHHHHTTSSC--------------------C-----
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC-cc-cccccCcchhhccccc--------------------c-----
Confidence 6999999999999999999885 4789999876 22 1111111111111110 0
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEE---cCCc--EeeccEEEEecCCCCCcch-
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEF---ENGK--IEEFEAIIFATGYKSTVRN- 318 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~---~~g~--~~~~D~vi~a~G~~p~~~~- 318 (381)
...+.....+.+++.+++++.+ |++++.+ .+.+ .+|+ ++++|.+|+|+|..|+...
T Consensus 55 --------------~~~~~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g 120 (198)
T d1nhpa1 55 --------------VNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDG 120 (198)
T ss_dssp --------------GGGSBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC
T ss_pred --------------hHHHHHhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccc
Confidence 0001111245567789998887 8999865 4554 3443 5789999999998765421
Q ss_pred ------hccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc-------------CccHHHHHHHHHhhhccc
Q 035902 319 ------WLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH-------------GISIDAKNIANDINLALT 377 (381)
Q Consensus 319 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~-------------~a~~~a~~~a~~i~~~l~ 377 (381)
++. . ...++++|++.+| +.++|+.|+|||+|||+.... .|..||+.+|+||.+.++
T Consensus 121 ~~~~~~~~~-~-~~~~~~~G~i~vd-~~~~T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~ 195 (198)
T d1nhpa1 121 VRPNTAWLK-G-TLELHPNGLIKTD-EYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 195 (198)
T ss_dssp EEESCGGGT-T-TSCBCTTSCBCCC-TTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred ccccccccc-c-cceeccCCceecC-CcccccccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence 222 1 2337889999999 677889999999999975311 578999999999987654
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.62 E-value=1e-15 Score=131.08 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=66.3
Q ss_pred cCCcEeeccEEEEecCCCCCcchhccc-------cCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHH
Q 035902 296 ENGKIEEFEAIIFATGYKSTVRNWLKR-------ADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISID 364 (381)
Q Consensus 296 ~~g~~~~~D~vi~a~G~~p~~~~~~~~-------~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~ 364 (381)
.+|++++||.+++|+|.+|+++.+... +..|+ ++++|++.+| +.++|+.|+|||+|||.+++. .|..+
T Consensus 167 ~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn-~~~~Ts~~~IyA~GDv~~~~~l~~~A~~~ 245 (261)
T d1mo9a1 167 AAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVN-EYLQTSVPNVYAVGDLIGGPMEMFKARKS 245 (261)
T ss_dssp ETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCC-TTSBCSSTTEEECGGGGCSSCSHHHHHHH
T ss_pred cccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeC-CCcccCCCCEEEEEEeCCCcccHHHHHHH
Confidence 467899999999999999998654320 11345 7889999999 678899999999999998876 79999
Q ss_pred HHHHHHHhhhc
Q 035902 365 AKNIANDINLA 375 (381)
Q Consensus 365 a~~~a~~i~~~ 375 (381)
|+.+|++|.+.
T Consensus 246 G~~aa~~i~G~ 256 (261)
T d1mo9a1 246 GCYAARNVMGE 256 (261)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 99999999874
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1.7e-16 Score=133.61 Aligned_cols=72 Identities=7% Similarity=-0.052 Sum_probs=59.6
Q ss_pred eccEEEEecCCCCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 302 EFEAIIFATGYKSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 302 ~~D~vi~a~G~~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
..+..+.++|.+|+++.+.. +..++ +++.|++.+| ..+.|+.|+|||+||+..++. .|..+|..+|++|++.
T Consensus 153 ~~~~~~~~~G~~p~~~~l~l-~~~gv~~~~~g~i~vd-~~~~T~~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i~~~ 228 (233)
T d1v59a1 153 TGSEVTPFVGRRPYIAGLGA-EKIGLEVDKRGRLVID-DQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 228 (233)
T ss_dssp CCEEECCCSCEEECCTTSCT-TTTTCCBCTTSCBCCC-TTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred cccccceecccccCCCCcCc-hhcCeEEcCCCcEEEC-CeEecCCCCEEEEcCCcccHHHHHHHHHHHHHHHHHHccC
Confidence 45556668999999876544 55777 8899999999 567799999999999988875 7899999999999754
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.4e-17 Score=137.42 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=102.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCCeeeecCCcccc-c----CCCCCCCCCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK-RAYDRMKLHLAKQFCE-L----PHMPFPSRTPTFVP 75 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~ 75 (381)
++|||+||||||||+++|..+++.|.+|+|||++ .+||.|.+ .+.+...+......+. + ....+... .....
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~-~~~~~ 78 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTT-INKFN 78 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEE-EEEEC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCC-ccccc
Confidence 4799999999999999999999999999999996 57876532 1111111000000000 0 00000000 00011
Q ss_pred HHHHH-----------HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCC
Q 035902 76 RISFI-----------NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPE 144 (381)
Q Consensus 76 ~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~ 144 (381)
..++. ...+..+++.++++........ .. . ....++ ..+.++.+++|||+.|..|.
T Consensus 79 ~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~---~~--~---~~~~~~-----~~~~~~~~iiatG~~p~ip~ 145 (217)
T d1gesa1 79 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFV---DA--K---TLEVNG-----ETITADHILIATGGRPSHPR 145 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEE---ET--T---EEEETT-----EEEEEEEEEECCCEEECCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccc---ee--e---eecCCC-----ceeeeeeeeeecCccccCCC
Confidence 12222 2223344455665543332211 11 1 111222 68999999999999999888
Q ss_pred CCCCCCCC--cc-eee-cCCCC---CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeE
Q 035902 145 VPGLGSFE--GE-YMH-SSKYE---NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTS 196 (381)
Q Consensus 145 ~~g~~~~~--~~-~~~-~~~~~---~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~ 196 (381)
+|+.+.+. .. +.. ...+. ......++++.++|+|.+|+|+|..+.+.|.+|+
T Consensus 146 ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~ 204 (217)
T d1gesa1 146 EPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS 204 (217)
T ss_dssp EESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred CCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence 88665421 00 111 11111 1122356799999999999999999999887763
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.61 E-value=1.9e-16 Score=132.37 Aligned_cols=192 Identities=15% Similarity=0.161 Sum_probs=112.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce-echhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV-LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
..++|||+|+.|+++|..+++.|.+|.++.+....- +..........+ ....... .............
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~ 72 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKAL--------ISASHRY---EQAKHSEEMGIKA 72 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHH--------HHHHHHH---HHHHTCGGGTEEC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceecccccccccc--------ccccchh---hhhhhhhhhcccc
Confidence 468999999999999999999999999999875100 000000000000 0000000 0000111111000
Q ss_pred CCCCCcccccccC----CCccccchhhhhhcCCCeEEccCcceEe-CCe--EEE-cCCcEeeccEEEEec--------CC
Q 035902 249 PKKGPFYFKAITG----QTPTIDVGAMDKIRKGEIQVFPSITSIN-RNE--VEF-ENGKIEEFEAIIFAT--------GY 312 (381)
Q Consensus 249 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~v~~v~-~~~--v~~-~~g~~~~~D~vi~a~--------G~ 312 (381)
... ......... ....+...+....+..+++++.+-.++. ... +.. .++..+.++.+|+++ |+
T Consensus 73 ~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~ 151 (223)
T d1ebda1 73 ENV-TIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGR 151 (223)
T ss_dssp CSC-EECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCE
T ss_pred hhh-eeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccccc
Confidence 000 000000000 0001122234455667787776622222 222 222 234578899999985 88
Q ss_pred CCCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 313 KSTVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 313 ~p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
+|+++.+.. +..|+ ++++|++.+| +.++|+.|+|||+|||.+.+. .|..||+.+|++|.+.
T Consensus 152 ~p~~~~l~l-~~~gv~~~~~G~I~vd-~~~~T~~~gvyA~GDv~~~~~~~~~A~~~g~~aa~~i~g~ 216 (223)
T d1ebda1 152 RPNTDELGL-EQIGIKMTNRGLIEVD-QQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH 216 (223)
T ss_dssp EESCSSSST-TTTTCCBCTTSCBCCC-TTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred eecCCCCCh-HhcCceECCCCCEeEC-CCCCCCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 898876534 55787 8999999999 678899999999999998875 7999999999999875
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.60 E-value=1e-15 Score=123.83 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYG 245 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (381)
.+|+++|||+|++|+|+|..|.+++. +|+++++++ .+.+.............. .
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~-~~~~~~~~~~~~~~~~~~--------------------~--- 56 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT-DYYTCYLSNEVIGGDRKL--------------------E--- 56 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS-CEECSTTHHHHHHTSSCG--------------------G---
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC-ccccccccccccchhhhh--------------------h---
Confidence 37999999999999999999999874 789999888 444332221110000000 0
Q ss_pred CCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcchhccc
Q 035902 246 LERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVRNWLKR 322 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~ 322 (381)
............++.+..+ +..++.. .+.+.+++++++|.+|+|||.+|+++.+...
T Consensus 57 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~ 116 (186)
T d1fcda1 57 --------------------SIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQR 116 (186)
T ss_dssp --------------------GGEECSHHHHTTTEEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEE
T ss_pred --------------------hhhhhhhhccccceeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhhhh
Confidence 0000122234456666665 4444433 5677889999999999999999998644220
Q ss_pred -----cCCcccccCCCCCCCCC-CCCCCCCcEEEEeccccccc------CccHHHHHHHHHhhhccccC
Q 035902 323 -----ADKDFFDEYGMPKRNCP-NHWKGENGLYCAGFSRTGLH------GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 323 -----~~~~~~~~~g~~~~~~~-~~~~~~~~ifa~Gd~~~~~~------~a~~~a~~~a~~i~~~l~~~ 379 (381)
...+.....++..++.. ...++.+++|++||+..... .|..||+.+|+||...++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~~p~~~~~A~~q~~~~A~ni~~~~~G~ 185 (186)
T d1fcda1 117 AGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVVLLKGE 185 (186)
T ss_dssp ECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEECTTCCSSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hhhheeccCcccccccccceeeeeecccccCceEeccccccCCCCchHhHHHHHHHHHHHHHHHHhcCC
Confidence 00122233444444422 34478899999999875421 77899999999999988764
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.3e-16 Score=130.56 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=113.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCC--eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGA--CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~--~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
.+++|||+|++|+++|..|.+.+. +|+++.+.+. .|.....+...+....... ..............+...
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~--~py~r~~Ls~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-- 77 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE--LPYMRPPLSKELWFSDDPN---VTKTLRFKQWNGKERSIY-- 77 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS--CCBCSGGGGTGGGCC--CT---HHHHCEEECTTSCEEESB--
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC--CCccccccceecccccCch---hhhhhhhhhcccchhhhh--
Confidence 468999999999999999998764 6999987652 1221111111110000000 000000000000000000
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--eEEEcCCcEeeccEEEEecCCCCCcchhcccc
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--EVEFENGKIEEFEAIIFATGYKSTVRNWLKRA 323 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~ 323 (381)
..+............+++.+|+++.+ |++++.+ .|.++||+++++|.+|+|+|..|+...+.. .
T Consensus 78 -----------~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~-~ 145 (213)
T d1m6ia1 78 -----------FQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAK-T 145 (213)
T ss_dssp -----------SSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHH-H
T ss_pred -----------cCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhh-c
Confidence 00000111222344567789999988 9999754 799999999999999999998766544433 2
Q ss_pred CCcc--cccCCCCCCCCCCCCCCCCcEEEEecccccc------------cCccHHHHHHHHHhhhcccc
Q 035902 324 DKDF--FDEYGMPKRNCPNHWKGENGLYCAGFSRTGL------------HGISIDAKNIANDINLALTD 378 (381)
Q Consensus 324 ~~~~--~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~------------~~a~~~a~~~a~~i~~~l~~ 378 (381)
.++ .+..|.+.+| +.++++ |+|||+|||+..+ ..|..||+.+|+||++..+.
T Consensus 146 -~gl~~~~~~~~i~vd-~~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~~ 211 (213)
T d1m6ia1 146 -GGLEIDSDFGGFRVN-AELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKP 211 (213)
T ss_dssp -HTCCBCTTTCSEECC-TTCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCCC
T ss_pred -cchhhhhhhhhhhhh-HhcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCCC
Confidence 444 3456788888 444454 9999999996542 16899999999999987543
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.59 E-value=9.6e-16 Score=114.07 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCcceeecCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHH
Q 035902 142 IPEVPGLGSFEGEYMHSSKYENGG-----KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGM 215 (381)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~ 215 (381)
.|++||.+. + +.......+.. ...+++++|||+|++|+|+|..|++.|.+|+++.+.+ +++++ .+.+++.
T Consensus 1 iP~ipG~~~-~--v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~ 76 (121)
T d1d7ya2 1 LPTLQGATM-P--VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP-RLMSRAAPATLAD 76 (121)
T ss_dssp CGGGTTCSS-C--EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTTSCHHHHH
T ss_pred CccCCCCCC-C--EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeecc-ccccccCCHHHHH
Confidence 477888764 2 33322221111 1257999999999999999999999999999999999 67664 3444443
Q ss_pred HHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeE
Q 035902 216 LLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEV 293 (381)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v 293 (381)
.+ .+.+++.+|+++.+ ++++..+.+
T Consensus 77 ~~-----------------------------------------------------~~~l~~~GV~i~~~~~v~~~~~~~v 103 (121)
T d1d7ya2 77 FV-----------------------------------------------------ARYHAAQGVDLRFERSVTGSVDGVV 103 (121)
T ss_dssp HH-----------------------------------------------------HHHHHTTTCEEEESCCEEEEETTEE
T ss_pred HH-----------------------------------------------------HHHHHHCCcEEEeCCEEEEEeCCEE
Confidence 33 34457788999888 999999999
Q ss_pred EEcCCcEeeccEEEEecC
Q 035902 294 EFENGKIEEFEAIIFATG 311 (381)
Q Consensus 294 ~~~~g~~~~~D~vi~a~G 311 (381)
.++||++++||.||+|+|
T Consensus 104 ~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 104 LLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp EETTSCEEECSEEEECSC
T ss_pred EECCCCEEECCEEEEeeC
Confidence 999999999999999998
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.59 E-value=1e-15 Score=130.33 Aligned_cols=133 Identities=17% Similarity=0.289 Sum_probs=88.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC------CCCCCC-----eeeecCC--c-----------
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK------KRAYDR-----MKLHLAK--Q----------- 57 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~------~~~~~~-----~~~~~~~--~----------- 57 (381)
.+|||+|||||++|++||+.|+++|.+|+|||+++.+++... ...... +....+. .
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN 80 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence 169999999999999999999999999999999987765211 000000 0000000 0
Q ss_pred -----ccccCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEE
Q 035902 58 -----FCELPHMPFPS-----RTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEY 127 (381)
Q Consensus 58 -----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~ 127 (381)
++.....+... .++......++.+.+.+.+++.+++++++++|+++..++ +....|.++++ +.+
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~g-----~~i 154 (251)
T d2i0za1 81 EDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVILQTG-----EVL 154 (251)
T ss_dssp HHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTC-----CEE
T ss_pred HHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC-CEEEEEEeCCC-----CeE
Confidence 00000000000 011223456788888888889999999999999999876 23334666665 679
Q ss_pred EeCEEEEccCCCC
Q 035902 128 VARYLVVATGENG 140 (381)
Q Consensus 128 ~~d~vIlAtG~~~ 140 (381)
++|+||+|||...
T Consensus 155 ~a~~vI~AtGg~S 167 (251)
T d2i0za1 155 ETNHVVIAVGGKS 167 (251)
T ss_dssp ECSCEEECCCCSS
T ss_pred ecCeEEEccCCcc
Confidence 9999999999874
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=8.5e-16 Score=113.76 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=84.2
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++||.+. .+++.+..+... .+++++|||+|++|+|+|..++++|.+|+++.|.+ +++|..+.++...+.+.
T Consensus 1 diPG~e~----~~t~~~~~~l~~-~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~-~~l~~~d~~~~~~~~~~--- 71 (116)
T d1gesa2 1 DIPGVEY----GIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD-APLPSFDPMISETLVEV--- 71 (116)
T ss_dssp CSTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSTTSCHHHHHHHHHH---
T ss_pred CcCCccc----cCCHHHHhChhh-CCCEEEEECCChhhHHHHHHhhccccEEEEEeecc-hhhhhcchhhHHHHHHH---
Confidence 3567653 234444433333 58999999999999999999999999999999999 78888777666555444
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEc
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFE 296 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~ 296 (381)
+++.+|+++.+ ++++..+ .+.++
T Consensus 72 --------------------------------------------------l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~ 101 (116)
T d1gesa2 72 --------------------------------------------------MNAEGPQLHTNAIPKAVVKNTDGSLTLELE 101 (116)
T ss_dssp --------------------------------------------------HHHHSCEEECSCCEEEEEECTTSCEEEEET
T ss_pred --------------------------------------------------HHHCCCEEEeCCEEEEEEEcCCcEEEEEEC
Confidence 35668888888 7777643 36778
Q ss_pred CCcEeeccEEEEecC
Q 035902 297 NGKIEEFEAIIFATG 311 (381)
Q Consensus 297 ~g~~~~~D~vi~a~G 311 (381)
+|+++++|.||+|+|
T Consensus 102 ~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 102 DGRSETVDCLIWAIG 116 (116)
T ss_dssp TSCEEEESEEEECSC
T ss_pred CCCEEEcCEEEEecC
Confidence 999999999999998
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.57 E-value=2.9e-15 Score=110.72 Aligned_cols=109 Identities=22% Similarity=0.369 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhC
Q 035902 142 IPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFL 221 (381)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l 221 (381)
+|++||.+. .+++.+..... .+++++|||||.+|+|+|..|++.|.+|+++.|.+ +++|.++.++...+.+.
T Consensus 1 ~P~IpG~e~----~~ts~~~~~l~--~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~-~il~~~d~~~~~~~~~~- 72 (117)
T d1onfa2 1 FPPVKGIEN----TISSDEFFNIK--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN-RILRKFDESVINVLEND- 72 (117)
T ss_dssp CCSCTTGGG----CEEHHHHTTCC--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS-SSCTTSCHHHHHHHHHH-
T ss_pred CcccCCHhH----cCchhHHhccC--CCCEEEEECCchHHHHHHHHHHhccccceeeehhc-cccccccHHHHHHHHHH-
Confidence 477888763 35555554433 37999999999999999999999999999999999 77887777666655444
Q ss_pred cHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEE
Q 035902 222 PCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVE 294 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~ 294 (381)
+++.+|+++.+ +++++.. .+.
T Consensus 73 ----------------------------------------------------l~~~gV~i~~~~~v~~i~~~~~~~~~v~ 100 (117)
T d1onfa2 73 ----------------------------------------------------MKKNNINIVTFADVVEIKKVSDKNLSIH 100 (117)
T ss_dssp ----------------------------------------------------HHHTTCEEECSCCEEEEEESSTTCEEEE
T ss_pred ----------------------------------------------------HHhCCCEEEECCEEEEEEEcCCCeEEEE
Confidence 36678889888 8888632 377
Q ss_pred EcCCcEee-ccEEEEec
Q 035902 295 FENGKIEE-FEAIIFAT 310 (381)
Q Consensus 295 ~~~g~~~~-~D~vi~a~ 310 (381)
+++|+.++ +|.|++|.
T Consensus 101 ~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 101 LSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp ETTSCEEEEESEEEECC
T ss_pred ECCCCEEEeCCEEEEeC
Confidence 88998874 79999984
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.56 E-value=7.2e-15 Score=125.11 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=86.5
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC----------CCCCC--CeeeecCCcc---------
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK----------KRAYD--RMKLHLAKQF--------- 58 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~----------~~~~~--~~~~~~~~~~--------- 58 (381)
|+ ++||+|||||+||++||+.|+++|.+|+|||+++.+|+.+. ..... ......+...
T Consensus 1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (253)
T d2gqfa1 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN 80 (253)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence 65 49999999999999999999999999999999987763211 00000 0000000000
Q ss_pred ------cccCCCCCCC--C--CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCC--eEEEEEeecCCCceEE
Q 035902 59 ------CELPHMPFPS--R--TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAK--AWIIVAKNTALDAYEE 126 (381)
Q Consensus 59 ------~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~v~~~~~~~~~~~~ 126 (381)
+......+.. . +........+.+.+.+.+++.+++++++++|.++...++.. .+.+.. ++ .+
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~-~~-----~~ 154 (253)
T d2gqfa1 81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV-NS-----TQ 154 (253)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE-TT-----EE
T ss_pred cchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec-CC-----EE
Confidence 0000000000 0 00112356788899999999999999999999998865332 233322 33 68
Q ss_pred EEeCEEEEccCCCC
Q 035902 127 YVARYLVVATGENG 140 (381)
Q Consensus 127 ~~~d~vIlAtG~~~ 140 (381)
++||+||+|||..+
T Consensus 155 ~~a~~VIiAtGG~S 168 (253)
T d2gqfa1 155 WQCKNLIVATGGLS 168 (253)
T ss_dssp EEESEEEECCCCSS
T ss_pred EEeCEEEEcCCccc
Confidence 99999999999863
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.55 E-value=1.2e-14 Score=122.12 Aligned_cols=69 Identities=26% Similarity=0.514 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCcceeecCCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYE-NGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR 208 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~ 208 (381)
|++|++||++.|+|.++|+.++. ....+.+|+|+|||+|.||+|+|..+++.+++++++.|++.+..+.
T Consensus 2 P~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~~~ 71 (235)
T d1w4xa2 2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPA 71 (235)
T ss_dssp CCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEEC
T ss_pred CCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceeeee
Confidence 78999999999999999999995 4567899999999999999999999999999999999998666653
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.51 E-value=2.2e-14 Score=119.34 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=111.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHH-HHH--HHHHHHhhhhhcCccccC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCK-LVD--FIVVMLSKMKFGNLFKYG 245 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~-~~~--~~~~~~~~~~~~~~~~~~ 245 (381)
..+++|||+|+.|+++|..++++|.+|+++.+.. . ..... .. .-.|.. +.. ........ ..+....+
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~-~--GG~c~----~~-gc~p~k~~~~~~~~~~~~~~--~~~~~~~g 74 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-L--GGTCL----NI-GCIPSKALIHVAEQFHQASR--FTEPSPLG 74 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC-T--THHHH----HH-SHHHHHHHHHHHHHHHHHHH--TTSCCTTC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-C--CCccc----cc-ccccchhhhhhHHHHhhhhh--ccccccce
Confidence 4579999999999999999999999999998764 1 00000 00 000000 000 00000000 01111122
Q ss_pred CCCCCCCCcccccccCCCc---cccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhcc-
Q 035902 246 LERPKKGPFYFKAITGQTP---TIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLK- 321 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~- 321 (381)
+........+......... .............++.++.+-..+.+......++..+++|.+++|||.+|.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~~~i~a~~viiAtG~~p~~lp~~~~ 154 (220)
T d1lvla1 75 ISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPR 154 (220)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTEEEC
T ss_pred EEeccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccceeEeeceeeEcCCCCccccccccc
Confidence 2111100000000000000 001112334445566666662222222233345678999999999999987643211
Q ss_pred -----ccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhcccc
Q 035902 322 -----RADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 322 -----~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l~~ 378 (381)
+...++..++|++.+| ..++|+.|+|||+||+.+.++ .|..+|+.+|++|++.-+.
T Consensus 155 ~~~~~~~~~~~~~~~g~i~vd-~~~~T~~~~I~A~GDv~~~~~l~~~a~~~g~~~a~~i~G~~~~ 218 (220)
T d1lvla1 155 TKGFNLECLDLKMNGAAIAID-ERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARR 218 (220)
T ss_dssp CSSSSGGGSCCCEETTEECCC-TTCBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCCcceeeehhhcCCccccc-chhhcCCCCEEEEEEeCCcccchhhhhhhHHHHHHHHcCCCCC
Confidence 0112233457889998 577899999999999998876 8899999999999886543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.51 E-value=2.3e-15 Score=112.52 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHH
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGGK-----FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAG 214 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~ 214 (381)
|+.|++||.+. +++.....+... ..+++++|||||++|+|+|..|++.|.+|+++.|.+ .+++ .+.++.
T Consensus 2 ~r~p~ipG~e~----~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~-~l~~-~d~~~~ 75 (122)
T d1xhca2 2 AREPQIKGKEY----LLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA-MFLG-LDEELS 75 (122)
T ss_dssp ECCCCSBTGGG----EECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS-CCTT-CCHHHH
T ss_pred CCCcCCCCccc----eEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccc-cccC-CCHHHH
Confidence 67788998652 344333322111 146899999999999999999999999999999998 5554 344444
Q ss_pred HHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCe
Q 035902 215 MLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNE 292 (381)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~ 292 (381)
..+ .+.+++.+++++.+ +++++.++
T Consensus 76 ~~~-----------------------------------------------------~~~l~~~GV~~~~~~~v~~~~~~~ 102 (122)
T d1xhca2 76 NMI-----------------------------------------------------KDMLEETGVKFFLNSELLEANEEG 102 (122)
T ss_dssp HHH-----------------------------------------------------HHHHHHTTEEEECSCCEEEECSSE
T ss_pred HHH-----------------------------------------------------HHHHHHCCcEEEeCCEEEEEeCCE
Confidence 333 33446678999988 88888887
Q ss_pred EEEcCCcEeeccEEEEecCC
Q 035902 293 VEFENGKIEEFEAIIFATGY 312 (381)
Q Consensus 293 v~~~~g~~~~~D~vi~a~G~ 312 (381)
+ +.+++.+++|.+|+|+|.
T Consensus 103 v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 103 V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp E-EETTEEEECSCEEEECCE
T ss_pred E-EeCCCEEECCEEEEEEEe
Confidence 6 457778999999999994
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.51 E-value=1.1e-14 Score=108.68 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=82.5
Q ss_pred ceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 154 EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
+++++.+...... .+++++|||+|.+|+|+|..++++|.+|+++.+++ +++|..+.++...+.+.+
T Consensus 12 ~i~ts~~~l~l~~-~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~-~il~~~d~~~~~~l~~~l------------ 77 (125)
T d1ojta2 12 RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD-GLMQGADRDLVKVWQKQN------------ 77 (125)
T ss_dssp TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHHHHHH------------
T ss_pred cEEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec-cccccchhhHHHHHHHHH------------
Confidence 4677766665544 58999999999999999999999999999999999 888988887776665544
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--Ce--EEEcC--C--cEeec
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NE--VEFEN--G--KIEEF 303 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~--v~~~~--g--~~~~~ 303 (381)
++.+++++.+ ++++.. ++ +.+++ | +++++
T Consensus 78 -----------------------------------------~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~ 116 (125)
T d1ojta2 78 -----------------------------------------EYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRY 116 (125)
T ss_dssp -----------------------------------------GGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEE
T ss_pred -----------------------------------------HHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEc
Confidence 6678888888 777753 33 44433 3 47999
Q ss_pred cEEEEecCC
Q 035902 304 EAIIFATGY 312 (381)
Q Consensus 304 D~vi~a~G~ 312 (381)
|.|++|+|+
T Consensus 117 D~vl~A~GR 125 (125)
T d1ojta2 117 DAVLVAAGR 125 (125)
T ss_dssp SCEEECCCE
T ss_pred CEEEEecCC
Confidence 999999994
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.6e-13 Score=101.31 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=80.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+|+.+.+. +.+ ..++.+++
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-------------------------------~~~--d~~~~~~~ 68 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-------------------------------PSF--DPMISETL 68 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------TTS--CHHHHHHH
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecchhh-------------------------------hhc--chhhHHHH
Confidence 679999999999999999999999999999987432 111 24788899
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
.+.+++.|+++++++.++.+...+ ++...++++++ +++.+|.||+|+|
T Consensus 69 ~~~l~~~GV~~~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~~~D~vi~a~G 116 (116)
T d1gesa2 69 VEVMNAEGPQLHTNAIPKAVVKNT-DGSLTLELEDG-----RSETVDCLIWAIG 116 (116)
T ss_dssp HHHHHHHSCEEECSCCEEEEEECT-TSCEEEEETTS-----CEEEESEEEECSC
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcC-CcEEEEEECCC-----CEEEcCEEEEecC
Confidence 999999999999999999998765 35566888777 6899999999998
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=4.9e-14 Score=118.47 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=112.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHH--HhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLL--LKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.++|||+|+.|+.+|..+++.|.+|.++.+.+... +.....+.... ..-+|............. ..+....++..
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~-~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~--~~~~~~~gi~~ 81 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP-LGTNWGLGGTCVNVGCIPKKLMHQAALLGQA--LKDSRNYGWKL 81 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT-TCCCCCTTHHHHHHSHHHHHHHHHHHHHHHH--HHHTTTTTBCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC-cccccccccccccccccchhhhhhhhhhhhH--hhhhhcccccc
Confidence 58999999999999999999999999998665210 00000000000 000011111111000000 01122222221
Q ss_pred CCCCCcccccccC-CC---ccccchhhhhhcCCCeEEccC-cceEeCCeEEE--cCCc--EeeccEEEEecCCCCCcchh
Q 035902 249 PKKGPFYFKAITG-QT---PTIDVGAMDKIRKGEIQVFPS-ITSINRNEVEF--ENGK--IEEFEAIIFATGYKSTVRNW 319 (381)
Q Consensus 249 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~v~~~~~-v~~v~~~~v~~--~~g~--~~~~D~vi~a~G~~p~~~~~ 319 (381)
............. .. ...+..+...+++.+|+++.+ ..-.....+.. .+++ .+.++.+++++|.+|.....
T Consensus 82 ~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i 161 (235)
T d1h6va1 82 EDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGI 161 (235)
T ss_dssp CSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSS
T ss_pred ccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEEE
Confidence 1110000000000 00 011223344566678888877 33334443333 3343 58899999999999975432
Q ss_pred c-------cccCCcc-ccc-CCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhc
Q 035902 320 L-------KRADKDF-FDE-YGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLA 375 (381)
Q Consensus 320 ~-------~~~~~~~-~~~-~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~ 375 (381)
. .++..++ ++. .|++.+| +.++|+.|+|||+|||+.+.. .|..+|+.+|++|.+.
T Consensus 162 ~~~~~~~~~l~~~gv~l~~~~g~I~vd-~~~~TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~g~ 229 (235)
T d1h6va1 162 RDSCTRTIGLETVGVKINEKTGKIPVT-DEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGG 229 (235)
T ss_dssp EEESCTTSCCTTTTCCCCSSSCCBCCC-TTSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred eeccceeeccccceeeeccccCccccC-CccccCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 1 1122445 554 6999999 678899999999999986532 7999999999999864
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.48 E-value=4.1e-14 Score=104.97 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=83.9
Q ss_pred ceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 154 EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
.++++.+...... .+++++|||+|.+|+|+|..++++|++|+++.+++ +++|..+.+++..+.+.+
T Consensus 8 ~v~~s~~~l~l~~-~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~-~ll~~~d~ei~~~l~~~l------------ 73 (119)
T d3lada2 8 VIVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD-KFLPAVDEQVAKEAQKIL------------ 73 (119)
T ss_dssp SEEEHHHHTSCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHHHHHHHHHH------------
T ss_pred EEEchhHhhCccc-CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec-ccCCcccchhHHHHHHHH------------
Confidence 3677777665544 68999999999999999999999999999999999 788998888777776554
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCC---cEeecc
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENG---KIEEFE 304 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g---~~~~~D 304 (381)
++.+++++.+ +++++.+ .+.+.++ ++++||
T Consensus 74 -----------------------------------------~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D 112 (119)
T d3lada2 74 -----------------------------------------TKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFD 112 (119)
T ss_dssp -----------------------------------------HHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEES
T ss_pred -----------------------------------------HhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECC
Confidence 5678888888 8887644 3555443 589999
Q ss_pred EEEEecC
Q 035902 305 AIIFATG 311 (381)
Q Consensus 305 ~vi~a~G 311 (381)
.|++|+|
T Consensus 113 ~vlvAvG 119 (119)
T d3lada2 113 KLIVAVG 119 (119)
T ss_dssp EEEECSC
T ss_pred EEEEeeC
Confidence 9999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.48 E-value=2.3e-14 Score=106.32 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=80.1
Q ss_pred eecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhC---CCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 156 MHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSC---GACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~---g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
+++.+..+... .+++++|||||++|+|+|..++++ |.+|+++.|.+ +++|..+.++...+.+.
T Consensus 6 ~ts~~~~~l~~-~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~-~il~~~d~~~~~~~~~~------------ 71 (117)
T d1feca2 6 ITSNEAFYLDE-APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD-MILRGFDSELRKQLTEQ------------ 71 (117)
T ss_dssp BCHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS-SSSTTSCHHHHHHHHHH------------
T ss_pred EchHHhhCccc-cCCeEEEECCChHHHHHHHHhHhhcccccccceecccc-cccccccchhhHHHHHH------------
Confidence 44444444333 589999999999999999877654 78999999999 78888777666555443
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-----eEEEcCCcEeeccE
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-----EVEFENGKIEEFEA 305 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-----~v~~~~g~~~~~D~ 305 (381)
+++.+|+++.+ +++++.+ .+.+++|++++||.
T Consensus 72 -----------------------------------------l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~ 110 (117)
T d1feca2 72 -----------------------------------------LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDV 110 (117)
T ss_dssp -----------------------------------------HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESE
T ss_pred -----------------------------------------HhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCE
Confidence 46778999988 8888643 47889999999999
Q ss_pred EEEecCC
Q 035902 306 IIFATGY 312 (381)
Q Consensus 306 vi~a~G~ 312 (381)
||+|+|+
T Consensus 111 Vi~a~GR 117 (117)
T d1feca2 111 VMLAIGR 117 (117)
T ss_dssp EEECSCE
T ss_pred EEEecCC
Confidence 9999995
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.46 E-value=4.2e-14 Score=104.37 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=81.0
Q ss_pred ceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 154 EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
+++++.+...... .+++++|||||++|+|+|..|++.|.+||++.|.+ +++|..+.++...+.+.+
T Consensus 7 ~~~~s~~~l~~~~-~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~-~il~~~d~~~~~~l~~~l------------ 72 (115)
T d1lvla2 7 PVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE-RILPTYDSELTAPVAESL------------ 72 (115)
T ss_dssp TEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHHHHHH------------
T ss_pred cEECChHHhCccc-CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeec-cccccccchhHHHHHHHH------------
Confidence 4566655555444 57999999999999999999999999999999999 888888777666655544
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCCeEEEc----CCcEeeccEEE
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRNEVEFE----NGKIEEFEAII 307 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~~v~~~----~g~~~~~D~vi 307 (381)
++.+++++.+ |++++++..... +++++++|.|+
T Consensus 73 -----------------------------------------~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi 111 (115)
T d1lvla2 73 -----------------------------------------KKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVL 111 (115)
T ss_dssp -----------------------------------------HHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEE
T ss_pred -----------------------------------------HhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEE
Confidence 5567888887 888887754432 23579999999
Q ss_pred EecC
Q 035902 308 FATG 311 (381)
Q Consensus 308 ~a~G 311 (381)
+|+|
T Consensus 112 ~A~G 115 (115)
T d1lvla2 112 VAVG 115 (115)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9998
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.44 E-value=1.9e-13 Score=117.64 Aligned_cols=59 Identities=20% Similarity=0.111 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 73 FVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
......+...+.+.+++.|++++.+++|+.+..++ +.|.|.+++ .++.||.||+|+|.+
T Consensus 147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~t~~------g~i~a~~vV~AaG~~ 205 (276)
T d1ryia1 147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EALFIKTPS------GDVWANHVVVASGVW 205 (276)
T ss_dssp BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSEEEEETT------EEEEEEEEEECCGGG
T ss_pred eeecccchhHHHHHHHHcCCEEecceEEEeEEeec--ceEEEecCC------eEEEcCEEEECCCcc
Confidence 34566778888888889999999999999998765 567788766 369999999999987
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.44 E-value=3e-13 Score=116.79 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+...+.+.+++.|++++.+++|+++...+ +.|.|+++++ ++++|.||+|+|.+
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~V~t~~g------~i~a~~VViAaG~~ 204 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFDISP--DSVKIETANG------SYTADKLIVSMGAW 204 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SCEEEEETTE------EEEEEEEEECCGGG
T ss_pred ccccccccccccccccccccCCcEEEEEEEEC--CEEEEEECCc------EEEcCEEEECCCCc
Confidence 45677888888899999999999999999876 6677888764 69999999999988
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.43 E-value=7.5e-14 Score=101.40 Aligned_cols=61 Identities=28% Similarity=0.463 Sum_probs=54.9
Q ss_pred CCCCCCCCCC----CcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 142 IPEVPGLGSF----EGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 142 ~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|++||++++ +|.++|+..|.+...+.+|+|+|||+|.||+|+|..|++.+++++++.|++
T Consensus 1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 4778887654 589999999999999999999999999999999999999999998888877
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=1.9e-12 Score=96.16 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=83.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+|+.+.+- +.+ ..++.+++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-------------------------------~~~--d~ei~~~l 70 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-------------------------------ASM--DGEVAKAT 70 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------------------SSS--CHHHHHHH
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-------------------------------hhh--hhhhHHHH
Confidence 789999999999999999999999999999987432 111 25788999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEc
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
++.+++.|+++++++++.++...++.....++..++..++.+++.+|.|++|
T Consensus 71 ~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 71 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp HHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred HHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 9999999999999999999998765555566777766667788999999987
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.43 E-value=4.8e-14 Score=117.91 Aligned_cols=197 Identities=18% Similarity=0.194 Sum_probs=109.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce----echhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV----LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~----~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
.++|||+|+.|+.+|..+++.|.+|.++.+..... +..........- ............. ........++
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~----~~~~~~~~~~~~~--~~~~~~~~gi 78 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIP----SKALLDSSYKFHE--AHESFKLHGI 78 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHH----HHHHHHHHHHHHH--HHTTSGGGTE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccch----hhhhhhhhhhhhh--hhhhhhhccc
Confidence 58999999999999999999999999999754111 110000000000 0000000000000 0001111111
Q ss_pred CCCCCCCcccccccCC----CccccchhhhhhcCCCeEEccC-cceEeCCeE--EEcC--CcEeeccEEEEecCCCCCcc
Q 035902 247 ERPKKGPFYFKAITGQ----TPTIDVGAMDKIRKGEIQVFPS-ITSINRNEV--EFEN--GKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~~v--~~~~--g~~~~~D~vi~a~G~~p~~~ 317 (381)
........+ ...... ...........++..+++++.+ ....+.... ...+ ...+.++.+++++|.+|...
T Consensus 79 ~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~ 157 (229)
T d3lada1 79 STGEVAIDV-PTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (229)
T ss_dssp ECSCCEECH-HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred ccCcceeec-chhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccc
Confidence 110000000 000000 0011122344445567777766 222222222 2222 24678999999999888653
Q ss_pred h-------hccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhcc
Q 035902 318 N-------WLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLAL 376 (381)
Q Consensus 318 ~-------~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l 376 (381)
. ++. +..|+ ++++|++.+| +.++|+.|+|||+||+.+++. .|..+|..+|++|++.-
T Consensus 158 ~~~~~~~~~~~-~~~gv~l~~~G~i~vd-~~~~T~vpgiyA~GDv~~g~~l~~~A~~~G~~aa~~i~g~~ 225 (229)
T d3lada1 158 PRRPVTTDLLA-ADSGVTLDERGFIYVD-DYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 225 (229)
T ss_dssp TEEECCTTCCS-SCCSCCBCTTSCBCCC-TTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccch-HhcCeeecCCCcEEec-ccccCCCCCEEEEeCCcchHHHHHHHHHHHHHHHHHHcCCC
Confidence 2 122 33666 8899999999 677899999999999988765 78899999999998653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=1.2e-13 Score=102.82 Aligned_cols=100 Identities=23% Similarity=0.239 Sum_probs=78.3
Q ss_pred eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHh
Q 035902 155 YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLS 234 (381)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (381)
++++.+..+... .+++++|||+|++|+|+|..|+++|.+||++.|++ +++|..+.++...+.+.+
T Consensus 10 v~ts~~~~~l~~-~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~-~~l~~~d~ei~~~l~~~l------------- 74 (122)
T d1v59a2 10 IVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMDGEVAKATQKFL------------- 74 (122)
T ss_dssp EECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSSSSSCHHHHHHHHHHH-------------
T ss_pred EEehHHhhCccc-CCCeEEEECCCchHHHHHHHHHhhCcceeEEEecc-ccchhhhhhhHHHHHHHH-------------
Confidence 566655555444 58999999999999999999999999999999999 888988887777765554
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C----eEEEcCC-----cEe
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N----EVEFENG-----KIE 301 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~----~v~~~~g-----~~~ 301 (381)
++.+|+++.+ +++++. + .+.+.++ +++
T Consensus 75 ----------------------------------------~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~i 114 (122)
T d1v59a2 75 ----------------------------------------KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENL 114 (122)
T ss_dssp ----------------------------------------HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ----------------------------------------HhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEE
Confidence 5678888888 777753 2 2344443 478
Q ss_pred eccEEEEe
Q 035902 302 EFEAIIFA 309 (381)
Q Consensus 302 ~~D~vi~a 309 (381)
++|.|++|
T Consensus 115 e~D~vlvA 122 (122)
T d1v59a2 115 EAEVLLVA 122 (122)
T ss_dssp EESEEEEC
T ss_pred EeCEEEEC
Confidence 99999986
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=2.1e-13 Score=114.30 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=75.6
Q ss_pred hhhhhcCCCeEEccC-cceEeC------C--eEEEcCCc--EeeccEEEEecCCCCCcchh--------ccccCCcc-cc
Q 035902 270 AMDKIRKGEIQVFPS-ITSINR------N--EVEFENGK--IEEFEAIIFATGYKSTVRNW--------LKRADKDF-FD 329 (381)
Q Consensus 270 ~~~~~~~~~v~~~~~-v~~v~~------~--~v~~~~g~--~~~~D~vi~a~G~~p~~~~~--------~~~~~~~~-~~ 329 (381)
+...+...+++++.+ -.-+.. . .+...+|+ ++++|.++++||.+|..... +.++..++ ++
T Consensus 100 ~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~ 179 (233)
T d1xdia1 100 ITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLG 179 (233)
T ss_dssp HHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCB
T ss_pred eehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhccc
Confidence 445566778888776 211111 1 23334553 78999999999999875322 11133455 78
Q ss_pred cCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhc
Q 035902 330 EYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLA 375 (381)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~ 375 (381)
++|++.+| +.++|+.|+|||+|||.+.+. .|..+|+.+|+||.+.
T Consensus 180 ~~G~I~vd-~~~~T~~~gIyA~GDv~~~~~l~~~A~~~g~~aa~~~~g~ 227 (233)
T d1xdia1 180 RGNYLTVD-RVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 227 (233)
T ss_dssp TTTBCCCC-SSSBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCCcC-CCcccCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHcCC
Confidence 89999999 678899999999999988765 7999999999999863
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.42 E-value=1e-13 Score=102.52 Aligned_cols=100 Identities=23% Similarity=0.245 Sum_probs=77.7
Q ss_pred eecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCC---CeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHH
Q 035902 156 MHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCG---ACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVM 232 (381)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g---~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (381)
.++.+.....+ .+++++|||||++|+|+|..+..++ .+|+++.|.+ +++|.++.++...+.+.+
T Consensus 8 ~t~~~~~~l~~-~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~-~iL~~~d~~~~~~l~~~l----------- 74 (117)
T d1aoga2 8 ISSNEAFYLPE-PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE-MILRGFDHTLREELTKQL----------- 74 (117)
T ss_dssp BCHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS-SSSTTSCHHHHHHHHHHH-----------
T ss_pred EcHHHHhCchh-cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc-hhhcccchHHHHHHHHHH-----------
Confidence 44444444333 5899999999999999998877665 5799999999 788887777666655444
Q ss_pred HhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C---eEEEcCCcEeeccE
Q 035902 233 LSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N---EVEFENGKIEEFEA 305 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~---~v~~~~g~~~~~D~ 305 (381)
++.+|+++.+ +++++. + .+.+++|++++||.
T Consensus 75 ------------------------------------------~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~ 112 (117)
T d1aoga2 75 ------------------------------------------TANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDL 112 (117)
T ss_dssp ------------------------------------------HHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESE
T ss_pred ------------------------------------------HhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCE
Confidence 6778899988 888863 2 47889999999999
Q ss_pred EEEec
Q 035902 306 IIFAT 310 (381)
Q Consensus 306 vi~a~ 310 (381)
|++|.
T Consensus 113 Vi~AI 117 (117)
T d1aoga2 113 VMMAI 117 (117)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99984
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.42 E-value=1.3e-13 Score=102.15 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=78.8
Q ss_pred ceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHH
Q 035902 154 EYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVML 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (381)
+++++.+...... .+++++|||+|++|+|+|..++++|.+||++.|.+ .++|..+.++...+.+.+
T Consensus 8 ~i~~s~~~l~~~~-~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~-~il~~~d~~~~~~l~~~l------------ 73 (117)
T d1ebda2 8 RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG-EILSGFEKQMAAIIKKRL------------ 73 (117)
T ss_dssp SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-SSSTTSCHHHHHHHHHHH------------
T ss_pred CEEChhHhhChhh-cCCeEEEECCCccceeeeeeecccccEEEEEEecc-eecccccchhHHHHHHHH------------
Confidence 3666666665544 58999999999999999999999999999999999 788888777666655444
Q ss_pred hhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEEc-CC--cEeecc
Q 035902 234 SKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEFE-NG--KIEEFE 304 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~~-~g--~~~~~D 304 (381)
++.+|+++.+ +++++.+ + +.+. +| +++++|
T Consensus 74 -----------------------------------------~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D 112 (117)
T d1ebda2 74 -----------------------------------------KKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDAD 112 (117)
T ss_dssp -----------------------------------------HHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEES
T ss_pred -----------------------------------------HhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeE
Confidence 6678899888 8888643 3 3433 34 578999
Q ss_pred EEEEe
Q 035902 305 AIIFA 309 (381)
Q Consensus 305 ~vi~a 309 (381)
.|+++
T Consensus 113 ~Vlvs 117 (117)
T d1ebda2 113 YVLVT 117 (117)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99974
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.41 E-value=1.1e-12 Score=98.99 Aligned_cols=97 Identities=13% Similarity=0.225 Sum_probs=78.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+++|+.+.+.. . ....++.+++
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~-------------------------------~-~~~~~~~~~~ 83 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-------------------------------R-VTAPPVSAFY 83 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------T-TSCHHHHHHH
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc-------------------------------c-ccchhhhhhh
Confidence 6899999999999999999999999999999874310 0 1124677888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeE-EEEEeecCCCceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAW-IIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
++.+++.|++++++++|..+....++... .+.++++ ..+.+|.||+|+|
T Consensus 84 ~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G-----~~i~~D~vi~a~G 133 (133)
T d1q1ra2 84 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG-----TRLPADLVIAGIG 133 (133)
T ss_dssp HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS-----CEEECSEEEECCC
T ss_pred hhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCC-----CEEECCEEEEeeC
Confidence 88889999999999999999876533332 3667776 6899999999998
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.41 E-value=2.6e-13 Score=113.47 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=58.8
Q ss_pred EeeccEEEEecCCC-CCcchhccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhh
Q 035902 300 IEEFEAIIFATGYK-STVRNWLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINL 374 (381)
Q Consensus 300 ~~~~D~vi~a~G~~-p~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~ 374 (381)
...++-++++.|.+ |++..... +..++ ++++|++.+| +.++|+.|||||+|||.+.+. .|..+|+.+|++|++
T Consensus 146 ~~~~~~~~l~~~~~~~~~~~~~~-e~~g~~~d~~G~I~vd-~~~~TsvpgVyAaGDv~~~~~l~~~A~~eG~~Aa~~i~G 223 (229)
T d1ojta1 146 IVAFKNCIIAAGSRAPNGKLISA-EKAGVAVTDRGFIEVD-KQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAG 223 (229)
T ss_dssp EEEEEEEEECCCEEEECGGGTTG-GGTTCCCCTTSCCCCC-TTSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred ceecceEEEEecccCCcccccch-hhhCccCCCCCCEEcC-CCccCCCCCEEEEEecCCCcchHHHHHHHHHHHHHHHcC
Confidence 45566666666554 65544433 44677 8999999999 678899999999999998875 789999999999987
Q ss_pred cc
Q 035902 375 AL 376 (381)
Q Consensus 375 ~l 376 (381)
.-
T Consensus 224 ~~ 225 (229)
T d1ojta1 224 HK 225 (229)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.7e-13 Score=102.56 Aligned_cols=109 Identities=20% Similarity=0.328 Sum_probs=80.1
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcH
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPC 223 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~ 223 (381)
++||.+. ..++.+...... .+++++|||+|++|+|+|..++++|.+|+++.|++ +++|..+.++...+.+.
T Consensus 2 ~IPG~e~----~~ts~~~~~l~~-~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~~~~~--- 72 (125)
T d3grsa2 2 QIPGASL----GITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD-KVLRSFDSMISTNCTEE--- 72 (125)
T ss_dssp TSTTGGG----SBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-SSCTTSCHHHHHHHHHH---
T ss_pred CCCCccc----cCCHHHHhChhh-cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc-ccccchhhHHHHHHHHH---
Confidence 4667553 244445444433 57999999999999999999999999999999999 78888777666655444
Q ss_pred HHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--CeEEE----
Q 035902 224 KLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--NEVEF---- 295 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~~v~~---- 295 (381)
+++.+|+++.+ +++++. +++..
T Consensus 73 --------------------------------------------------l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~ 102 (125)
T d3grsa2 73 --------------------------------------------------LENAGVEVLKFSQVKEVKKTLSGLEVSMVT 102 (125)
T ss_dssp --------------------------------------------------HHHTTCEEETTEEEEEEEEETTEEEEEEEE
T ss_pred --------------------------------------------------HHHCCCEEEeCCEEEEEEEcCCeEEEEEEE
Confidence 36678888888 777743 33221
Q ss_pred -cCC------cEeeccEEEEecC
Q 035902 296 -ENG------KIEEFEAIIFATG 311 (381)
Q Consensus 296 -~~g------~~~~~D~vi~a~G 311 (381)
.+| ..+++|.|++|+|
T Consensus 103 ~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 103 AVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp CCTTSCCEEEEEEEESEEEECSC
T ss_pred ccCCcCcCccccccCCEEEEEeC
Confidence 233 2568999999988
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.40 E-value=2.7e-12 Score=94.95 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..+++.|.+|+++++.+.+. +. ...++.+++
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-------------------------------~~--~d~ei~~~l 69 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------------------PA--VDEQVAKEA 69 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-------------------------------Cc--ccchhHHHH
Confidence 689999999999999999999999999999987431 11 135789999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
++.+++.|++++++++++++...+ ....++..++ .+.+++.+|.|++|+|
T Consensus 70 ~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~v~~~~~--~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 70 QKILTKQGLKILLGARVTGTEVKN--KQVTVKFVDA--EGEKSQAFDKLIVAVG 119 (119)
T ss_dssp HHHHHHTTEEEEETCEEEEEEECS--SCEEEEEESS--SEEEEEEESEEEECSC
T ss_pred HHHHHhcCceeecCcEEEEEEEeC--CEEEEEEEEC--CCCEEEECCEEEEeeC
Confidence 999999999999999999998876 4444666543 2346799999999998
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=2.9e-13 Score=109.69 Aligned_cols=171 Identities=13% Similarity=0.020 Sum_probs=104.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.++++|||||++|+++|..+++.|.+|+++.|.+. ....... .......
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~-~g~~~~~-----------------------------~~i~~~~- 53 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK-GGQLTTT-----------------------------TEVENWP- 53 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST-TGGGGGC-----------------------------SBCCCST-
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc-ccccccc-----------------------------chhhhhh-
Confidence 56899999999999999999999999999987651 1000000 0000000
Q ss_pred CCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--e-EEEcCCcEeeccEEEEecCCCCCcchhcc--c
Q 035902 249 PKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--E-VEFENGKIEEFEAIIFATGYKSTVRNWLK--R 322 (381)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~-v~~~~g~~~~~D~vi~a~G~~p~~~~~~~--~ 322 (381)
.... ......+.+.....+.+.++.+..+ |+.+... . ........++++.+++++|..|....... +
T Consensus 54 -~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~ 126 (190)
T d1trba1 54 -GDPN------DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIF 126 (190)
T ss_dssp -TCCS------SCBHHHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGG
T ss_pred -cccc------ccchHHHHHHHHHHHHhcCcEEecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceee
Confidence 0000 0000011122233444556666665 6666554 2 22334568899999999998765321111 0
Q ss_pred cCCcccccCCCCCCCC----CCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 323 ADKDFFDEYGMPKRNC----PNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 323 ~~~~~~~~~g~~~~~~----~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
. ..+--++|++.++. +...|+.|+||++||+++... .|..+|..+|.++.++|++
T Consensus 127 ~-~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaGDv~~~~~~q~i~Aag~G~~AA~~a~~yl~~ 189 (190)
T d1trba1 127 E-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 189 (190)
T ss_dssp T-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred c-ceEecCCcEEEEecCCcccccccccCeEEEeEEecCcceeEEEEEeccHHHHHHHHHHHHhh
Confidence 1 11212467777762 234589999999999987653 6888999999999988864
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.39 E-value=8.6e-13 Score=97.78 Aligned_cols=91 Identities=22% Similarity=0.358 Sum_probs=75.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|+++|.+|+++|+++.+. + .....++.+++
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~-~~~~~~~~~~~ 78 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM-------------------------------S-RAAPATLADFV 78 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------T-TTSCHHHHHHH
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc-------------------------------c-ccCCHHHHHHH
Confidence 789999999999999999999999999999987431 0 01124788888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
++.+++.|+++++++.|+++.. +. +.+.++ +++.+|.||+|+|
T Consensus 79 ~~~l~~~GV~i~~~~~v~~~~~----~~--v~l~dg-----~~i~~D~vi~a~G 121 (121)
T d1d7ya2 79 ARYHAAQGVDLRFERSVTGSVD----GV--VLLDDG-----TRIAADMVVVGIG 121 (121)
T ss_dssp HHHHHTTTCEEEESCCEEEEET----TE--EEETTS-----CEEECSEEEECSC
T ss_pred HHHHHHCCcEEEeCCEEEEEeC----CE--EEECCC-----CEEECCEEEEeeC
Confidence 8899999999999999987652 33 777777 6899999999998
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.36 E-value=9.4e-12 Score=91.84 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=77.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..+++.|.+|+|+|+.+.+. +.+ ..++.+++
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il-------------------------------~~~--d~~~~~~l 69 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-------------------------------SGF--EKQMAAII 69 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------TTS--CHHHHHHH
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecceec-------------------------------ccc--cchhHHHH
Confidence 689999999999999999999999999999987542 111 24788899
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEc
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
.+.+++.|+++++++.++++...+ +...+....+ ++.+++.+|.|++.
T Consensus 70 ~~~l~~~GI~i~~~~~v~~i~~~~--~~~~v~~~~~--g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 70 KKRLKKKGVEVVTNALAKGAEERE--DGVTVTYEAN--GETKTIDADYVLVT 117 (117)
T ss_dssp HHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEET--TEEEEEEESEEEEC
T ss_pred HHHHHhcCCEEEcCCEEEEEEEcC--CEEEEEEEeC--CCEEEEEeEEEEEC
Confidence 999999999999999999998876 4555666543 24467999999984
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.35 E-value=4e-13 Score=100.14 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=77.5
Q ss_pred eeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHh
Q 035902 155 YMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLS 234 (381)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (381)
++++.+...... .+++++|||+|.+|+|+|..++++|.+||++.|.+ .++|..+.++...+.+.+
T Consensus 12 v~ts~~~l~l~~-~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~-~~l~~~d~~~~~~l~~~l------------- 76 (123)
T d1dxla2 12 IVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS-EIVPTMDAEIRKQFQRSL------------- 76 (123)
T ss_dssp EECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS-SSSTTSCHHHHHHHHHHH-------------
T ss_pred EEeHHHhhCccc-cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc-ccCchhhhcchhhhhhhh-------------
Confidence 556655555444 68999999999999999999999999999999999 788888877666665544
Q ss_pred hhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC--e--EEE--c-CC--cEeec
Q 035902 235 KMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN--E--VEF--E-NG--KIEEF 303 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~--~--v~~--~-~g--~~~~~ 303 (381)
++.+|+++.+ +.+++.+ + +.+ . +| ++++|
T Consensus 77 ----------------------------------------~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~ 116 (123)
T d1dxla2 77 ----------------------------------------EKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEA 116 (123)
T ss_dssp ----------------------------------------HHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEE
T ss_pred ----------------------------------------hcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEc
Confidence 6677888888 8888654 2 333 2 33 46899
Q ss_pred cEEEEe
Q 035902 304 EAIIFA 309 (381)
Q Consensus 304 D~vi~a 309 (381)
|.|++|
T Consensus 117 D~vLvA 122 (123)
T d1dxla2 117 DVVLVS 122 (123)
T ss_dssp SEEECC
T ss_pred CEEEEc
Confidence 999987
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=8.2e-15 Score=123.59 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=93.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-------CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS-------VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g-------~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (381)
.++|+||||||||++||+.|+++| ++|+|||+.+.+||.|+...+ +.+..
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~-----------------------p~~~~ 58 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVA-----------------------PDHPK 58 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSC-----------------------TTCTG
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccC-----------------------ccccc
Confidence 478999999999999999999987 479999999999998764321 12223
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCCCCCCCCc--
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVPGLGSFEG-- 153 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~g~~~~~~-- 153 (381)
...+.+.........++.+++++++. .. +...+ ....||.+++|||+.+..+..+|......
T Consensus 59 ~~~~~~~~~~~~~~~g~~~~~~~~v~--------~~--~~~~~------~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~ 122 (239)
T d1lqta2 59 IKSISKQFEKTAEDPRFRFFGNVVVG--------EH--VQPGE------LSERYDAVIYAVGAQSRGVPTPGLPFDDQSG 122 (239)
T ss_dssp GGGGHHHHHHHHTSTTEEEEESCCBT--------TT--BCHHH------HHHHSSEEEECCCCCEECCCCTTSCCBTTTT
T ss_pred chhhhhhhhhhhccCCceEEEEEEec--------cc--cchhh------hhccccceeeecCCCcccccccccccccccc
Confidence 33455555666666777777776541 00 11111 22468999999999855555444432110
Q ss_pred ceeecCCCC--CCC------CCCCCeEEEEcCCCCHHHHHHHHhh
Q 035902 154 EYMHSSKYE--NGG------KFIGKNVLVVGCGNSGMEIAYDLSS 190 (381)
Q Consensus 154 ~~~~~~~~~--~~~------~~~~~~v~viG~G~~~~e~a~~l~~ 190 (381)
......... ... ...+++.+|+|+|..+++++..+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~ 167 (239)
T d1lqta2 123 TIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 167 (239)
T ss_dssp BCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence 000000000 000 1135778888899999998876554
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.35 E-value=2.2e-14 Score=122.48 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=34.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
||++||||||||+.||..+++.|.+|+|||+.. +||+
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGt 38 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGT 38 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCe
Confidence 899999999999999999999999999999864 6764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.34 E-value=4.4e-13 Score=104.80 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=97.0
Q ss_pred EccCCCCCCC-CCCCCCCCCcceeecCCCCCCCCCCCCeEEEE--cCCCCHHHHHHHHhhCCCeeEEEEecCcceechhh
Q 035902 134 VATGENGLIP-EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVV--GCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREI 210 (381)
Q Consensus 134 lAtG~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vi--G~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~ 210 (381)
.|||+.|..| ++||.+.-...++++.+........++.++|+ |||++|+|+|..|+++|++||++.+.+ .+++..+
T Consensus 3 ~atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~-~~~~~~~ 81 (156)
T d1djqa2 3 NTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHF 81 (156)
T ss_dssp CSSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTTHHHH
T ss_pred cCCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC-ccccccc
Confidence 3899998877 79998753335677777766666566677766 999999999999999999999999988 6666544
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceE
Q 035902 211 VFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSI 288 (381)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v 288 (381)
...... +.+.+++.+++++++ +.++
T Consensus 82 ~~~~~~-----------------------------------------------------~~~~l~~~GV~i~~~~~v~~i 108 (156)
T d1djqa2 82 TLEYPN-----------------------------------------------------MMRRLHELHVEELGDHFCSRI 108 (156)
T ss_dssp TTCHHH-----------------------------------------------------HHHHHHHTTCEEEETEEEEEE
T ss_pred hhHHHH-----------------------------------------------------HHHHHhhccceEEeccEEEEe
Confidence 433222 244556778999988 9999
Q ss_pred eCCeEEEcCCcEeeccEEEEecCCCCCcc
Q 035902 289 NRNEVEFENGKIEEFEAIIFATGYKSTVR 317 (381)
Q Consensus 289 ~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 317 (381)
+++++.+.+....+.+.++.++|..|+..
T Consensus 109 ~~~~v~l~~~~~~~~~~v~~~~g~~~~~~ 137 (156)
T d1djqa2 109 EPGRMEIYNIWGDGSKRTYRGPGVSPRDA 137 (156)
T ss_dssp ETTEEEEEETTCSCSCCCCCCTTSCSSCC
T ss_pred cCcceEEEeeeccccceeeeeeEEEeccc
Confidence 98888776665566666666777666654
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=3.5e-12 Score=103.13 Aligned_cols=113 Identities=14% Similarity=0.317 Sum_probs=81.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
++||+||||||+|+.||..+++.|.+|+|||+....+...... ....+. .++......++.+.
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~-----------~i~~~~------~~~~~~~~~~~~~~ 67 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT-----------EVENWP------GDPNDLTGPLLMER 67 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCS-----------BCCCST------TCCSSCBHHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccc-----------hhhhhh------ccccccchHHHHHH
Confidence 5899999999999999999999999999999876433211110 000111 12334567788888
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+...+.++++.+... +|+.+...+ +.|.+.... ..+.++.+++|+|..++
T Consensus 68 ~~~~~~~~~~~~~~~-~V~~~~~~~--~~~~v~~~~------~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 68 MHEHATKFETEIIFD-HINKVDLQN--RPFRLNGDN------GEYTCDALIIATGASAR 117 (190)
T ss_dssp HHHHHHHTTCEEECC-CEEEEECSS--SSEEEEESS------CEEEEEEEEECCCEEEC
T ss_pred HHHHHHhcCcEEecc-eeEEEecCC--CcEEEEEee------eeEeeeeeeeecceeee
Confidence 888888888776554 587777665 566676554 57899999999998643
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.33 E-value=1.3e-12 Score=98.66 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechh-hHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTRE-IVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
.+++++|||+|++|+|+|..|++.|.+|+++.+.+ +++++. +..+...+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~-~~l~~~~~~~~~~~~----------------------------- 83 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA-RVLERVTAPPVSAFY----------------------------- 83 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS-STTTTTSCHHHHHHH-----------------------------
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc-cccccccchhhhhhh-----------------------------
Confidence 57999999999999999999999999999999999 666653 22322222
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-------eEEEcCCcEeeccEEEEecC
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-------EVEFENGKIEEFEAIIFATG 311 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-------~v~~~~g~~~~~D~vi~a~G 311 (381)
.+.+++.+|+++.+ +++++.. .+.+++|+++++|.||+|+|
T Consensus 84 ------------------------~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 84 ------------------------EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp ------------------------HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred ------------------------hhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 34446678888887 7777542 37789999999999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.32 E-value=6.4e-12 Score=92.76 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHh---CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNN---LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~---~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
++++|||||+.|+.+|..+.+ .|.+|+++++.+.+. +.+ ..++.
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-------------------------------~~~--d~~~~ 65 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------------------------------RGF--DSELR 65 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------------------------------TTS--CHHHH
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-------------------------------ccc--cchhh
Confidence 689999999999999987655 378999999986431 111 24788
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
+++++.+++.|+++++++.++++....+ +...+.++++ ..+.||.||+|+|
T Consensus 66 ~~~~~~l~~~GI~v~~~~~v~~i~~~~~-g~~~v~~~~g-----~~i~~D~Vi~a~G 116 (117)
T d1feca2 66 KQLTEQLRANGINVRTHENPAKVTKNAD-GTRHVVFESG-----AEADYDVVMLAIG 116 (117)
T ss_dssp HHHHHHHHHTTEEEEETCCEEEEEECTT-SCEEEEETTS-----CEEEESEEEECSC
T ss_pred HHHHHHHhhCcEEEEcCCEEEEEEECCC-CEEEEEECCC-----CEEEcCEEEEecC
Confidence 9999999999999999999999987653 4556788877 6899999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=7.3e-12 Score=95.13 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=79.1
Q ss_pred ccEEEECCCHHHHHHHHHHHh----CCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNN----LSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISF 79 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~----~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (381)
++++|||||+.|+.+|..|++ .|.+|+++++++.+. +.. -..++
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l-------------------------------~~~-~~~~~ 85 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-------------------------------GKI-LPEYL 85 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-------------------------------TTT-SCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC-------------------------------ccc-CCHHH
Confidence 579999999999999999864 488999999987431 111 12467
Q ss_pred HHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 80 INYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
.+++.+.+++.|+++++++.|.+++.++ +...+++++| +.+.||.||+|+|.
T Consensus 86 ~~~~~~~l~~~GV~~~~~~~V~~i~~~~--~~~~v~l~~G-----~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 86 SNWTMEKVRREGVKVMPNAIVQSVGVSS--GKLLIKLKDG-----RKVETDHIVAAVGL 137 (137)
T ss_dssp HHHHHHHHHTTTCEEECSCCEEEEEEET--TEEEEEETTS-----CEEEESEEEECCCE
T ss_pred HHHHHHHHHhCCcEEEeCCEEEEEEecC--CEEEEEECCC-----CEEECCEEEEeecC
Confidence 8888889999999999999999998876 6677888887 78999999999993
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.31 E-value=4.4e-12 Score=94.37 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
.+++++|||+|++|+|+|..++++|.+||++.+.+ +++|+ .+.+++..+
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~-~~l~~~~d~~~~~~~----------------------------- 78 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD-RPLGVYLDKEFTDVL----------------------------- 78 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-STTTTTCCHHHHHHH-----------------------------
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC-cccccccchhhHHHH-----------------------------
Confidence 57899999999999999999999999999999998 66664 344444443
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC---eEEEcCCcEeeccEEEEec
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN---EVEFENGKIEEFEAIIFAT 310 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~---~v~~~~g~~~~~D~vi~a~ 310 (381)
.+.+++.+++++.+ +++++++ ...+.||++++||.|++|.
T Consensus 79 ------------------------~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 79 ------------------------TEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp ------------------------HHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred ------------------------HHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 33447788999988 8888865 3457899999999999984
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3.2e-11 Score=89.87 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=78.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+++++.+- +.+ ..++.+++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~~--d~~~~~~~ 69 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------RSF--DSMISTNC 69 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------TTS--CHHHHHHH
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-------------------------------cch--hhHHHHHH
Confidence 689999999999999999999999999999987431 111 24788899
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCC----ceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALD----AYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~----~~~~~~~d~vIlAtG 137 (381)
.+.+++.|++++++++++++...+ ..+.+.......+ ......+|.|++|+|
T Consensus 70 ~~~l~~~Gv~i~~~~~v~~i~~~~--~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 70 TEELENAGVEVLKFSQVKEVKKTL--SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp HHHHHHTTCEEETTEEEEEEEEET--TEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 999999999999999999998876 4555554432221 123578999999998
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.31 E-value=1.2e-12 Score=97.63 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
.++++++|||||++|+|+|..|+++|.+|+++.|++ .++|..+.++...+.+
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~-~~l~~~d~~~~~~~~~--------------------------- 71 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE-PLKLIKDNETRAYVLD--------------------------- 71 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC-TTTTCCSHHHHHHHHH---------------------------
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc-hhhcccccchhhhhhh---------------------------
Confidence 357999999999999999999999999999999998 6777777665555444
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC------eEE---EcCCcEeeccEEEEecC
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN------EVE---FENGKIEEFEAIIFATG 311 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~------~v~---~~~g~~~~~D~vi~a~G 311 (381)
.+++.+++++.+ ++++..+ .+. ..+++++++|.||+|+|
T Consensus 72 --------------------------~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 72 --------------------------RMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp --------------------------HHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred --------------------------hhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 346678888887 7777653 121 23457899999999998
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=3e-11 Score=89.52 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=79.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..|++.|.+|+|++++..++ . ...++.+++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~--------------------------------~--~D~~~~~~l 66 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR--------------------------------G--FDQDMANKI 66 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST--------------------------------T--SCHHHHHHH
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc--------------------------------c--CCHHHHHHH
Confidence 689999999999999999999999999998764211 1 125788999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCC--CCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDEN--AKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
.+.+++.|+++++++.|+.+...++ .+...++...+...+.....+|.|++|+|
T Consensus 67 ~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 67 GEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp HHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred HHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 9999999999999999999876432 34455666665555556778999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.30 E-value=5.3e-12 Score=92.84 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+|+.+.+. +.+ ..++.+++
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-------------------------------~~~--d~~~~~~l 68 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-------------------------------PTY--DSELTAPV 68 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------TTS--CHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-------------------------------ccc--cchhHHHH
Confidence 689999999999999999999999999999987432 111 24688888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
++.+++.|++++++++|.+++. +...+...++ +.+++.+|.||+|+|
T Consensus 69 ~~~l~~~gV~i~~~~~V~~i~~----~~~~~~~~~~---~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 69 AESLKKLGIALHLGHSVEGYEN----GCLLANDGKG---GQLRLEADRVLVAVG 115 (115)
T ss_dssp HHHHHHHTCEEETTCEEEEEET----TEEEEECSSS---CCCEECCSCEEECCC
T ss_pred HHHHHhhcceEEcCcEEEEEcC----CeEEEEEcCC---CeEEEEcCEEEEecC
Confidence 8999999999999999988852 3211222222 335799999999998
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.30 E-value=6e-12 Score=102.74 Aligned_cols=122 Identities=14% Similarity=0.041 Sum_probs=73.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED-CSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
.|||+||||||||+.||.++++.|.++.||+++. .+|.......... ......... .+ +..+.-..+..
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg----~~kg~l~re-----id-~kG~av~a~ra 71 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPF----PPGSLLERA-----YD-PKDERVWAFHA 71 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCC----CTTCHHHHH-----CC-TTCCCHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCcccc----CCCcceeee-----ee-ccchhhhhHHH
Confidence 5999999999999999999999999999999873 2222211110000 000000000 00 11122223334
Q ss_pred HHHHHHHH-hCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 82 YVDNYVSQ-MGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
.+++.+.. .++.+ ...+|.++..++ +....|.+.++ ..+.++.||||||++-+
T Consensus 72 Q~k~~l~~~~nL~i-~q~~V~dli~e~-~~v~gV~t~~G-----~~~~AkaVILtTGTFL~ 125 (230)
T d2cula1 72 RAKYLLEGLRPLHL-FQATATGLLLEG-NRVVGVRTWEG-----PPARGEKVVLAVGSFLG 125 (230)
T ss_dssp HHHHHHHTCTTEEE-EECCEEEEEEET-TEEEEEEETTS-----CCEECSEEEECCTTCSS
T ss_pred HHHHHHhhhcCHHH-HhccceeeEecc-cceeeEEeccc-----cEEEEeEEEEccCccee
Confidence 44444443 35554 456688887765 24445777776 68999999999999854
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.29 E-value=1.3e-11 Score=107.64 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=85.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCC----CCCee-----eecCC---------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRA----YDRMK-----LHLAK--------------- 56 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~----~~~~~-----~~~~~--------------- 56 (381)
++||+|||||++|+++|++|+++|.+|+||||.+..+|. +.... ..... .+...
T Consensus 16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d 95 (308)
T d1y0pa2 16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 95 (308)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccc
Confidence 489999999999999999999999999999999876652 11100 00000 00000
Q ss_pred ---------------cccccCCCCCC-------CCC-----C--CCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeC
Q 035902 57 ---------------QFCELPHMPFP-------SRT-----P--TFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107 (381)
Q Consensus 57 ---------------~~~~~~~~~~~-------~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 107 (381)
.++.-...++. ... + .......+...+.+.+.+.++.+++++.++++..++
T Consensus 96 ~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~ 175 (308)
T d1y0pa2 96 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD 175 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred hHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhc
Confidence 00000000000 000 0 011234567777777888899999999999987765
Q ss_pred CCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+....-|...+. .++...++++.||+|||....
T Consensus 176 ~G~V~Gv~~~~~-~~~~~~i~Ak~VVlAtGG~~~ 208 (308)
T d1y0pa2 176 KGTVKGILVKGM-YKGYYWVKADAVILATGGFAK 208 (308)
T ss_dssp TSCEEEEEEEET-TTEEEEEECSEEEECCCCCTT
T ss_pred cccccccccccc-ccceeEeecCeEEEccCcccc
Confidence 333333555543 223467999999999998743
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.29 E-value=1.4e-11 Score=90.49 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=77.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +.+ ..++.+++
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-------------------------------~~~--d~~~~~~~ 69 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-------------------------------RKF--DESVINVL 69 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-------------------------------TTS--CHHHHHHH
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhcccc-------------------------------ccc--cHHHHHHH
Confidence 679999999999999999999999999999987431 111 25888999
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEE-EeCEEEEcc
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEY-VARYLVVAT 136 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~-~~d~vIlAt 136 (381)
++.+++.|++++++++++++....+ +...+++.+| +.+ .+|.||+|.
T Consensus 70 ~~~l~~~gV~i~~~~~v~~i~~~~~-~~~~v~~~~G-----~~~~~~D~Vi~AI 117 (117)
T d1onfa2 70 ENDMKKNNINIVTFADVVEIKKVSD-KNLSIHLSDG-----RIYEHFDHVIYCV 117 (117)
T ss_dssp HHHHHHTTCEEECSCCEEEEEESST-TCEEEEETTS-----CEEEEESEEEECC
T ss_pred HHHHHhCCCEEEECCEEEEEEEcCC-CeEEEEECCC-----CEEEeCCEEEEeC
Confidence 9999999999999999999987653 5667888876 444 579999983
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=8.8e-13 Score=97.95 Aligned_cols=63 Identities=19% Similarity=0.081 Sum_probs=49.2
Q ss_pred eecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhC
Q 035902 156 MHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFL 221 (381)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l 221 (381)
+++.++..... .+++++|||+|++|+|+|..++++|.+|+++.|. .++|.++.+++..+.+.+
T Consensus 8 ~tsd~~~~l~~-~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~--~~l~~~D~~~~~~l~~~l 70 (122)
T d1h6va2 8 ISSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQDMANKIGEHM 70 (122)
T ss_dssp BCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--SSSTTSCHHHHHHHHHHH
T ss_pred EcchHHhCccc-CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec--hhhccCCHHHHHHHHHHH
Confidence 34444444333 6899999999999999999999999999999864 577888877776665544
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.6e-12 Score=96.90 Aligned_cols=91 Identities=21% Similarity=0.353 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhh----CCCeeEEEEecCcceech-hhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCcc
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSS----CGACTSIVVRGPVHVLTR-EIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLF 242 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~----~g~~v~~i~r~~~~~~p~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..++++|||||.+|+|+|..|++ .|.+|+++.+.+ +++++ .+.++...+
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~-~~l~~~~~~~~~~~~------------------------- 89 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK-GNMGKILPEYLSNWT------------------------- 89 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS-STTTTTSCHHHHHHH-------------------------
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc-cCCcccCCHHHHHHH-------------------------
Confidence 47899999999999999999964 588999999998 66554 333333333
Q ss_pred ccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEEecCC
Q 035902 243 KYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIFATGY 312 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~a~G~ 312 (381)
.+.+++.+|+++.+ |++++.+ .+.+++|+++++|.||+|+|.
T Consensus 90 ----------------------------~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 90 ----------------------------MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp ----------------------------HHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred ----------------------------HHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 44457789999988 8888754 588899999999999999983
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.28 E-value=2e-11 Score=90.73 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=79.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..+++.|.+|+|+++++.+- +. ...++.+++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-------------------------------~~--~d~~~~~~l 72 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-------------------------------PT--MDAEIRKQF 72 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-------------------------------ch--hhhcchhhh
Confidence 689999999999999999999999999999987331 11 124788889
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEcc
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVAT 136 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAt 136 (381)
.+.+++.|+++++++.+.+++..+ +...+.+.....++.+.+.+|+|++|.
T Consensus 73 ~~~l~~~GI~i~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 73 QRSLEKQGMKFKLKTKVVGVDTSG--DGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp HHHHHHSSCCEECSEEEEEEECSS--SSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred hhhhhcccceEEcCCceEEEEEcc--CeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 999999999999999999998765 344566655444455779999999984
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.26 E-value=1.4e-11 Score=91.59 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=79.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
.+++|||||+.|+.+|..+++.|.+|+++|+.+.+. +. ...++.+++
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il-------------------------------~~--~d~~~~~~l 73 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-------------------------------QG--ADRDLVKVW 73 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------TT--SCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc-------------------------------cc--chhhHHHHH
Confidence 689999999999999999999999999999987432 11 135888899
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
++.+++.++++++++++.++...+ +...+.+.+.. ++.+.+.||.|++|+|
T Consensus 74 ~~~l~~~gv~~~~~~~v~~v~~~~--~g~~v~~~~~~-g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 74 QKQNEYRFDNIMVNTKTVAVEPKE--DGVYVTFEGAN-APKEPQRYDAVLVAAG 124 (125)
T ss_dssp HHHHGGGEEEEECSCEEEEEEEET--TEEEEEEESSS-CCSSCEEESCEEECCC
T ss_pred HHHHHHcCcccccCcEEEEEEEcC--CcEEEEEEeCC-CCeEEEEcCEEEEecC
Confidence 999999999999999999998876 34446655432 2235799999999998
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.26 E-value=3.8e-12 Score=107.02 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=63.1
Q ss_pred cEeeccEEEEecCCCCCcchh-------ccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHH
Q 035902 299 KIEEFEAIIFATGYKSTVRNW-------LKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKN 367 (381)
Q Consensus 299 ~~~~~D~vi~a~G~~p~~~~~-------~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~ 367 (381)
+.+++|.+++++|.+|..... +.++..++ ++++|++.+| +.++|+.|+|||+|||++.+. .|..+|+.
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd-~~~~Ts~~~iyA~GDv~~~~~~~~~A~~eg~~ 226 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVD-AYSKTNVDNIYAIGDVTDRVMLTPVAINEGAA 226 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCC-TTCBCSSTTEEECGGGGCSCCCHHHHHHHHHH
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcC-cccCcCCCCEEEEEECCCCccchhhHHHHHHH
Confidence 578999999999999875432 11133566 8899999999 567899999999999998865 89999999
Q ss_pred HHHHhhhcc
Q 035902 368 IANDINLAL 376 (381)
Q Consensus 368 ~a~~i~~~l 376 (381)
+|++|.+..
T Consensus 227 aa~~~~~~~ 235 (240)
T d1feca1 227 FVDTVFANK 235 (240)
T ss_dssp HHHHHHSSC
T ss_pred HHHHHhCCC
Confidence 999998754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.25 E-value=8.8e-12 Score=92.63 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++++|||||+.|+.+|..|++.|.+|+|+|+.+.+. + -..++.+++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------~---~d~~~~~~~ 78 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-------------------------------G---LDEELSNMI 78 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-------------------------------T---CCHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc-------------------------------C---CCHHHHHHH
Confidence 679999999999999999999999999999886321 0 124788888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGE 138 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~ 138 (381)
.+.+++.|+++++++++.+++. .. +. .++ ..+.+|.||+|+|.
T Consensus 79 ~~~l~~~GV~~~~~~~v~~~~~----~~--v~-~~~-----~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 79 KDMLEETGVKFFLNSELLEANE----EG--VL-TNS-----GFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHTTEEEECSCCEEEECS----SE--EE-ETT-----EEEECSCEEEECCE
T ss_pred HHHHHHCCcEEEeCCEEEEEeC----CE--EE-eCC-----CEEECCEEEEEEEe
Confidence 8889999999999999988753 22 33 343 68999999999994
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.25 E-value=3e-11 Score=105.81 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=87.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCC----CCee-----eecCCc--------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAY----DRMK-----LHLAKQ-------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~----~~~~-----~~~~~~-------------- 57 (381)
++||+|||||++|++||++++++|.+|+|+||.+..+|. +....+ .... .+....
T Consensus 19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d 98 (317)
T d1qo8a2 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND 98 (317)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccc
Confidence 489999999999999999999999999999998866552 111100 0000 000000
Q ss_pred ----------------ccccCCCCCCC-------CC-------CCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeC
Q 035902 58 ----------------FCELPHMPFPS-------RT-------PTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107 (381)
Q Consensus 58 ----------------~~~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 107 (381)
+..-...++.. .. ........+...+...+++.++.+++++.++++..++
T Consensus 99 ~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~ 178 (317)
T d1qo8a2 99 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVND 178 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECT
T ss_pred hhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecc
Confidence 00000001000 00 1122345788888888999999999999999987765
Q ss_pred CCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+....-+...+. .+....+.++.||+|||.+..
T Consensus 179 ~g~V~Gv~~~~~-~~~~~~i~Ak~VVlAtGG~~~ 211 (317)
T d1qo8a2 179 DHSVVGAVVHGK-HTGYYMIGAKSVVLATGGYGM 211 (317)
T ss_dssp TSBEEEEEEEET-TTEEEEEEEEEEEECCCCCTT
T ss_pred cccceeeEeecc-cceEEEEeccceEEecccccc
Confidence 333333444442 334467899999999998743
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.24 E-value=6e-11 Score=88.06 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=76.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+++++++.+.+. + ....++.+++
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-------------------------------~--~~d~~~~~~~ 69 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------------------L--IKDNETRAYV 69 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------T--CCSHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-------------------------------c--ccccchhhhh
Confidence 689999999999999999999999999999986332 1 1124678888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
++.+++.++++++++++..+..+.+.....+.... .+..+.+.+|.||+|+|
T Consensus 70 ~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~--~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 70 LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMT--PNGEMRIETDFVFLGLG 121 (121)
T ss_dssp HHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEE--TTEEEEEECSCEEECCC
T ss_pred hhhhhccccEEEcCCEEEEEEecCCceEEEEEEEe--CCCCEEEEcCEEEEEEC
Confidence 88999999999999999999887533321222221 11236799999999998
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.3e-11 Score=99.11 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=104.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPK 250 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (381)
.++|||||++|+++|..+++.|.+|.++.++....+... . .... + +.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~-----------~------------------~~~~--~--~~ 49 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDT-----------V------------------DIEN--Y--IS 49 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGC-----------C------------------EECC--B--TT
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCccccc-----------c------------------ccee--c--cc
Confidence 589999999999999999999999999987541100000 0 0000 0 00
Q ss_pred CCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-------eEEEcCCcEeeccEEEEecCCCCCcchhcc
Q 035902 251 KGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-------EVEFENGKIEEFEAIIFATGYKSTVRNWLK 321 (381)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-------~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 321 (381)
......+.+...+...++...++.... ++.+... .....+.+.+.++.++.++|..++...+..
T Consensus 50 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 122 (184)
T d1fl2a1 50 -------VPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122 (184)
T ss_dssp -------BSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGT
T ss_pred -------cchhhhHHHHHHHHHHhhheeceeeccceeeeecccccccceeeeeeecceeeeccccccccccccccccccc
Confidence 000000111112223333444444444 3333322 233456678999999999998876644443
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhccccC
Q 035902 322 RADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTDH 379 (381)
Q Consensus 322 ~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~~ 379 (381)
. .......|.+.++ ....++.|+||++|||.+.+. .|..+|..+|.++..+|.+.
T Consensus 123 -~-~~~~~~~g~i~v~-~~~~t~~~gv~a~gd~~~~~~~~~vva~g~G~~aA~~~~~~l~~~ 181 (184)
T d1fl2a1 123 -G-AVERNRMGEIIID-AKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRT 181 (184)
T ss_dssp -T-TSCBCTTSCBCCC-TTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -c-cccccccceeccC-CceeeeCCCEEEEeeecCcccCCcEEEEECcHHHHHHHHHHHhhc
Confidence 2 2336677888888 466789999999999988653 67788999999988887543
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.24 E-value=4.1e-11 Score=105.16 Aligned_cols=138 Identities=18% Similarity=0.159 Sum_probs=85.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC--cCCCCC----CCee-----eecCCc--------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL--WKKRAY----DRMK-----LHLAKQ-------------- 57 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~--~~~~~~----~~~~-----~~~~~~-------------- 57 (381)
.+||+|||+|++|++||+.|+++|.+|+|||+.+..+|. +....+ .... .+....
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d 102 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 102 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccC
Confidence 479999999999999999999999999999998876652 111100 0000 000000
Q ss_pred ----------------ccccCCCCCCC-------C-------CCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeC
Q 035902 58 ----------------FCELPHMPFPS-------R-------TPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDE 107 (381)
Q Consensus 58 ----------------~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 107 (381)
+......++.. . .........+.+.+...+.+.++++++++.++++..++
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~ 182 (322)
T d1d4ca2 103 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA 182 (322)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCS
T ss_pred HHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccc
Confidence 00000011100 0 01122355777888888888899999999999987754
Q ss_pred CCCeEEEEEeecCCCceEEEEeCEEEEccCCCCC
Q 035902 108 NAKAWIIVAKNTALDAYEEYVARYLVVATGENGL 141 (381)
Q Consensus 108 ~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~ 141 (381)
+....-|...+. ..+...++++.||+|||....
T Consensus 183 ~G~V~Gv~~~~~-~~~~~~i~Ak~VIlAtGG~~~ 215 (322)
T d1d4ca2 183 SGKVTGVLVKGE-YTGYYVIKADAVVIAAGGFAK 215 (322)
T ss_dssp SSCCCEEEEEET-TTEEEEEECSEEEECCCCCTT
T ss_pred cccccceEEEee-cccEEEEeCCeEEEcCCCccc
Confidence 322222444432 223457999999999998744
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.3e-11 Score=91.85 Aligned_cols=61 Identities=31% Similarity=0.429 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 142 IPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++||.++|.++-+++|..++...+.+|+++|||+|.+|+|.|..|++.+++|++++|++
T Consensus 3 ~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~ 63 (126)
T d1fl2a2 3 NMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 63 (126)
T ss_dssp CCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred cCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence 4578999999998899988888888999999999999999999999999999999999998
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.21 E-value=7.6e-11 Score=86.72 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=75.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL---SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
++++|||||+.|+.+|..+... +.+|+|+|+.+.+- +.+ ..++.
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-------------------------------~~~--d~~~~ 67 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-------------------------------RGF--DHTLR 67 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-------------------------------TTS--CHHHH
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-------------------------------ccc--chHHH
Confidence 6899999999999999876655 45799999876321 111 25788
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEcc
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVAT 136 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAt 136 (381)
+++++.+++.|+++++++++++++... ++...+++++| +++.||.||+|.
T Consensus 68 ~~l~~~l~~~GV~v~~~~~v~~ie~~~-~~~~~v~~~~G-----~~i~~D~Vi~AI 117 (117)
T d1aoga2 68 EELTKQLTANGIQILTKENPAKVELNA-DGSKSVTFESG-----KKMDFDLVMMAI 117 (117)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEECT-TSCEEEEETTS-----CEEEESEEEECS
T ss_pred HHHHHHHHhcCcEEEcCCEEEEEEEcC-CCeEEEEECCC-----cEEEeCEEEEeC
Confidence 999999999999999999999998754 35566888887 679999999983
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.21 E-value=4.3e-11 Score=88.86 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
++|+|||||+.|+.+|..|++.|.+|+++|+.+.+- +.. -..++.+++
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l-------------------------------~~~-~d~~~~~~~ 78 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL-------------------------------GVY-LDKEFTDVL 78 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------------------TTT-CCHHHHHHH
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEecCccc-------------------------------ccc-cchhhHHHH
Confidence 689999999999999999999999999999986321 111 124688888
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEc
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
++.+++.|+++++++++.++..++ ....+ ..++ .++.+|.||+|
T Consensus 79 ~~~l~~~gv~~~~~~~v~~i~~~~--~~~~v-~~dg-----~~i~~D~vi~a 122 (123)
T d1nhpa2 79 TEEMEANNITIATGETVERYEGDG--RVQKV-VTDK-----NAYDADLVVVA 122 (123)
T ss_dssp HHHHHTTTEEEEESCCEEEEECSS--BCCEE-EESS-----CEEECSEEEEC
T ss_pred HHHhhcCCeEEEeCceEEEEEcCC--CEEEE-EeCC-----CEEECCEEEEE
Confidence 889999999999999999997643 32223 4555 67999999998
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.20 E-value=2.1e-11 Score=105.45 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=82.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC-------CCcCCC-------------------CCCCeeeecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA-------SLWKKR-------------------AYDRMKLHLA 55 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g-------~~~~~~-------------------~~~~~~~~~~ 55 (381)
++++|+||||||+|+++|..|+++|++|+|||+.+... ..+... ....+.....
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~ 80 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA 80 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEec
Confidence 15799999999999999999999999999999986321 111100 0011111100
Q ss_pred CcccccCCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEE
Q 035902 56 KQFCELPHMP-FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVV 134 (381)
Q Consensus 56 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIl 134 (381)
.......... ..........+..+.+.+.+.+++.+..+.+..........+. ....|+..++ ++..+++||+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~--g~~~~i~a~~vVg 157 (292)
T d1k0ia1 81 GQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQG-ERPYVTFERD--GERLRLDCDYIAG 157 (292)
T ss_dssp TEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTS-SSCEEEEEET--TEEEEEECSEEEE
T ss_pred ccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeecc-CceEEEEecC--CcEEEEEeCEEEE
Confidence 0000000000 0001112345677888888888887777767666555544432 3334555433 2345789999999
Q ss_pred ccCCCCCCCC
Q 035902 135 ATGENGLIPE 144 (381)
Q Consensus 135 AtG~~~~~~~ 144 (381)
|+|.+.....
T Consensus 158 ADG~~S~vR~ 167 (292)
T d1k0ia1 158 CDGFHGISRQ 167 (292)
T ss_dssp CCCTTCSTGG
T ss_pred CCCCCCcccc
Confidence 9999955443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.20 E-value=2.5e-11 Score=103.33 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=76.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC---------------CCCCeeeecCCcccccCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKR---------------AYDRMKLHLAKQFCELPHMPFP 67 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 67 (381)
..+|+||||||+|+++|..|+++|++|+|||+++..+..+... ...... ........+......
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~ 82 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSI-SVPSSSMEYVDALTG 82 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGT-CBCCCEEEEEETTTC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhh-ccCCCcceeEeccCC
Confidence 4789999999999999999999999999999986543222110 000000 000000000000000
Q ss_pred CC---CCCCCCHHHHHHHHH-HHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 68 SR---TPTFVPRISFINYVD-NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 68 ~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
.. .............+. ......+..+++++.++++.... ..+++++.++ .++++|++|.|.|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~v~v~~~dG-----~~~~~d~~v~adG~~s 152 (265)
T d2voua1 83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDS--ETVQMRFSDG-----TKAEANWVIGADGGAS 152 (265)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECS--SCEEEEETTS-----CEEEESEEEECCCTTC
T ss_pred ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeC--CceEEEECCC-----CEEEEEEEeccccccc
Confidence 00 000011111111122 22233466788999999998876 5677888887 6899999999999873
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=7.5e-11 Score=100.03 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=38.3
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
|+ +|||+|||||++|++||+.|+++|.+|+|+|+++.+||.
T Consensus 2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~ 43 (297)
T d2bcgg1 2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE 43 (297)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcc
Confidence 64 599999999999999999999999999999999988874
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.18 E-value=1.2e-12 Score=106.37 Aligned_cols=41 Identities=24% Similarity=0.476 Sum_probs=37.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWK 43 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~ 43 (381)
.++|+||||||+|++||..|+++|. +|+|||+++.+++.|.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~ 45 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST 45 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhh
Confidence 4789999999999999999999998 5999999998887654
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=6.9e-12 Score=93.47 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=53.9
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 144 EVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++||.++|.|+-+++|..++...+.+++++|||+|.+|+|.|..|++.+++|++++|++
T Consensus 2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~ 60 (126)
T d1trba2 2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 60 (126)
T ss_dssp CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence 46777778888889888888888899999999999999999999999999999999998
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.17 E-value=5.6e-11 Score=103.44 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 75 PRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
....+...+.+.+++.|++++.+++|+++..++ ++.+.|.+++ .+++||.||+|+|.+
T Consensus 146 ~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~-~~v~~V~T~~------g~i~a~~VV~aaG~~ 203 (305)
T d1pj5a2 146 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTAD------GVIPADIVVSCAGFW 203 (305)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETT------EEEECSEEEECCGGG
T ss_pred chhhhhhhHHhhhhcccccccCCceEEEEEEeC-CEEEEEeccc------eeEECCEEEEecchh
Confidence 455677788888888999999999999999876 2334466655 369999999999998
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.15 E-value=6.8e-11 Score=103.09 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=35.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+||+|||||++|++||+.|+++|++|+|+|+++.+||.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 38 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGA 38 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCce
Confidence 37999999999999999999999999999999988873
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.15 E-value=3.4e-10 Score=99.79 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
...+...+.+.+++.+++++.++.+.++..++ .....+...+...++...+.++.||+|||...
T Consensus 157 G~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~-~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~ 220 (336)
T d2bs2a2 157 GHTMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (336)
T ss_dssp HHHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHHhccccccceeeeeeccccc-ccccceeEEeccCCcEEEEecCeEEEeccccc
Confidence 45677777777888899999999999888765 23333555555556677899999999999873
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=4.5e-11 Score=95.87 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=72.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYV 83 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (381)
|||+||||||+|+.||..+++.|.+++|||++ .|+.+.... ....++.. + ......+...+
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~----------~~~~~~~~------~-~~~~~~~~~~~ 62 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTV----------DIENYISV------P-KTEGQKLAGAL 62 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCC----------EECCBTTB------S-SEEHHHHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccccc----------cceecccc------c-hhhhHHHHHHH
Confidence 89999999999999999999999999999975 344322110 00011111 0 12345677777
Q ss_pred HHHHHHhCCccccccEEEEEEEeCCC-CeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 84 DNYVSQMGINPRYHRSVESASYDENA-KAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+...++++.+......+..+...... ..+.....+. ..+.++.+++++|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~ 114 (184)
T d1fl2a1 63 KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASG-----AVLKARSIIVATGAK 114 (184)
T ss_dssp HHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTS-----CEEEEEEEEECCCEE
T ss_pred HHHhhheeceeeccceeeeecccccccceeeeeeecc-----eeeeccccccccccc
Confidence 77777777766666666666554322 2222333332 578999999999975
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.14 E-value=2.8e-11 Score=98.35 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=75.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNLS--VPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
+|+|||||++|+.+|..|++.+ .+|+++++++.+.. .... +.... . ......+.+..+
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~---~~~~l-------~--------~~~~~~~~~~~~ 61 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAG---MQLYL-------E--------GKVKDVNSVRYM 61 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGG---HHHHH-------T--------TSSCCGGGSBSC
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccC---cchhh-------c--------ccccchHHHHHh
Confidence 5999999999999999999874 47999998874420 0000 00000 0 000111122222
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLI 142 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~ 142 (381)
..+.+++.+++++++++|.+++.++ +. |+..+...++...+.||++|+|+|+.+..
T Consensus 62 ~~~~l~~~gi~v~~~~~V~~i~~~~--~~--v~~~~~~~g~~~~~~~D~li~a~G~~~~~ 117 (198)
T d1nhpa1 62 TGEKMESRGVNVFSNTEITAIQPKE--HQ--VTVKDLVSGEERVENYDKLIISPGAVPFE 117 (198)
T ss_dssp CHHHHHHTTCEEEETEEEEEEETTT--TE--EEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred hHHHHHHCCcEEEEeeceeeEeecc--cc--ceeeecccccccccccceeeEeecceeec
Confidence 2345566799999999999998765 55 66666555666789999999999988653
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.4e-12 Score=107.46 Aligned_cols=134 Identities=12% Similarity=0.104 Sum_probs=76.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCCe--eeecCCccc--ccCCCCCCCCCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCSASLWKKRAYDRM--KLHLAKQFC--ELPHMPFPSRTPTFVP 75 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~ 75 (381)
++++++|||||++|+.+|..|++++. +|++|+++..++. .....+.. ....+.... .+...........+.+
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py--~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY--MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP 80 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB--CSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCc--cccccceecccccCchhhhhhhhhhcccchhhhhcCC
Confidence 35889999999999999999999876 6999998875541 10000000 000000000 0000000000000000
Q ss_pred HHH-HHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCCC
Q 035902 76 RIS-FINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEVP 146 (381)
Q Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~~ 146 (381)
.+. ........+++.+++++++++|++++.++ +. |++++| +++.||.||+|+|+.|..+.++
T Consensus 81 ~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~--~~--V~l~dG-----~~i~~d~lViAtG~~~~~~~l~ 143 (213)
T d1m6ia1 81 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRD--NM--VKLNDG-----SQITYEKCLIATGGTEPNVELA 143 (213)
T ss_dssp GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGG--TE--EEETTS-----CEEEEEEEEECCCEEEECCTTH
T ss_pred hhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccC--ce--eeeccc-----eeeccceEEEeeeeecchhhhh
Confidence 000 00011123345688999999999998765 44 888887 7899999999999886555443
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=99.13 E-value=1.6e-10 Score=99.15 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=81.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCeEEEecCCCCCCCcCCC--CCCCeeeecCCccc-ccCCCCC---CCCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVPNIILEREDCSASLWKKR--AYDRMKLHLAKQFC-ELPHMPF---PSRTPTFVP 75 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~v~lie~~~~~g~~~~~~--~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~ 75 (381)
++||+||||||+|++||+.|+++ |++|+|||+++.+||.|... .++..........+ .-....+ +........
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 112 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence 58999999999999999999874 99999999999999866532 33333332222111 0000111 111111233
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEee---------cCCCceEEEEeCEEEEccCCC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKN---------TALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---------~~~~~~~~~~~d~vIlAtG~~ 139 (381)
...+..++.+.+...+..+...+.+..+...+. ....+.... ........+.++.+|+|+|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 184 (278)
T d1rp0a1 113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN-RVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHD 184 (278)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETT-EEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCcceeeeecCC-eEEEEEeccceeeeeecccccccceeeccceEEECcCCC
Confidence 445556666666666666777777777766542 111121110 111234679999999999976
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=4.3e-11 Score=98.73 Aligned_cols=194 Identities=12% Similarity=0.104 Sum_probs=106.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcce--echhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHV--LTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLER 248 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~--~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.++|||+|+.|+++|..+++.|.+|.++.+.. .- +...... |........... ..+.......++..
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~---------p~k~l~~~a~~~-~~~~~~~~~~g~~~ 72 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCV---------PKKVMWHAAQIR-EAIHMYGPDYGFDT 72 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHH---------HHHHHHHHHHHH-HHHHTTGGGGTEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEeccccc---------ccccchhhHHHH-HHHHhhhhhcCccC
Confidence 58999999999999999999999999999864 10 0000000 000000000000 00000011111110
Q ss_pred CCCCCcccccccCC---CccccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecCCCCCcchhcc----
Q 035902 249 PKKGPFYFKAITGQ---TPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNWLK---- 321 (381)
Q Consensus 249 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~---- 321 (381)
......+....... .......+...+.+.+|++...-...........+++.+.++.+++|||.+|..+..-.
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l 152 (217)
T d1gesa1 73 TINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNI 152 (217)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCEEESCTTS
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCccccCCCCCCcCCc
Confidence 00000000000000 00111223444566677776652222222233456778999999999998877643211
Q ss_pred -ccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhcc
Q 035902 322 -RADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLAL 376 (381)
Q Consensus 322 -~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l 376 (381)
++..++ .+++|++.+| ....++.++||++||...+.. .+..+|..++.++.+..
T Consensus 153 ~l~~~gv~~~~~~~i~~d-~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 153 NLEAAGVKTNEKGYIVVD-KYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp CHHHHTCCBCTTSCBCCC-TTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccEEEcCCccEeeC-chhccCCCcEEEECCCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 011344 6778888888 456678899999999988754 67789999998887654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.07 E-value=9.3e-12 Score=103.86 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=68.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
.+|+||||||||++||..|++. |.+|+|||+.+.+||.+..... +.......+..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~-----------------------~~~~~~~~~~~ 58 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------PDHPEVKNVIN 58 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------TTCGGGGGHHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhcc-----------------------ccccccccchh
Confidence 5799999999999999999876 6799999999999886542100 12233345556
Q ss_pred HHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC-CCCCCCC
Q 035902 82 YVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG-LIPEVPG 147 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~-~~~~~~g 147 (381)
+........++.++.+++|. .. +...+ -.-.||.|++|||+.+ ..+..++
T Consensus 59 ~~~~~~~~~~~~~~~~~~v~--------~~--~~~~~------l~~~~d~v~~a~Ga~~~~~~~~~~ 109 (230)
T d1cjca2 59 TFTQTARSDRCAFYGNVEVG--------RD--VTVQE------LQDAYHAVVLSYGAEDKSRPIDPS 109 (230)
T ss_dssp HHHHHHTSTTEEEEBSCCBT--------TT--BCHHH------HHHHSSEEEECCCCCEECCCCCTT
T ss_pred hhhhhhhcCCeeEEeeEEeC--------cc--ccHHH------HHhhhceEEEEeeccccccccccc
Confidence 56666666777777666541 00 11111 1124899999999983 3333443
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.8e-10 Score=101.23 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=35.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
||+|||||++|++||+.|+++|++|+|+|+++.+||
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GG 36 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG 36 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBT
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc
Confidence 799999999999999999999999999999999988
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.04 E-value=4.1e-11 Score=101.84 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=37.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+||++|||||++|+.+|..+++.|.++++||+.+.+||.
T Consensus 42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~ 80 (261)
T d1mo9a1 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80 (261)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccc
Confidence 599999999999999999999999999999999988884
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.1e-10 Score=91.52 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeE
Q 035902 140 GLIPEVPGLGSFEGEYMHSSKYENGGKFIGKNVLVVGCGNSGMEIAYDLSSCGACTS 196 (381)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~ 196 (381)
|+.|++||.+. ..++++.++.......+++++|||||.+|+|+|..+.+.|.+++
T Consensus 2 Pr~p~IpG~d~--~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~ 56 (162)
T d1ps9a2 2 PRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTS 56 (162)
T ss_dssp ECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred CCCCCCCCCCC--CCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccc
Confidence 67889999874 34778777776666689999999999999999999999997643
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=6.2e-10 Score=96.82 Aligned_cols=138 Identities=19% Similarity=0.150 Sum_probs=79.3
Q ss_pred CC--cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCC--CcCCCCC-------CCeee---------------
Q 035902 1 ME--EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSAS--LWKKRAY-------DRMKL--------------- 52 (381)
Q Consensus 1 M~--~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~--~~~~~~~-------~~~~~--------------- 52 (381)
|+ ++||+|||+|+||++||+++++. |.+|+|+||....+| .|.+.-. +....
T Consensus 1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~ 80 (311)
T d1kf6a2 1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQ 80 (311)
T ss_dssp CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCH
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHH
Confidence 65 49999999999999999999986 679999999875443 1211100 00000
Q ss_pred --------ecCCc--ccccCCCCCCC--------------CCC-----CCCC-HHHHHHHHHHHHHHhCCccccccEEEE
Q 035902 53 --------HLAKQ--FCELPHMPFPS--------------RTP-----TFVP-RISFINYVDNYVSQMGINPRYHRSVES 102 (381)
Q Consensus 53 --------~~~~~--~~~~~~~~~~~--------------~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~ 102 (381)
..+.. +..-...++.. ..+ .... +..+...+.+..++.+++++.++.+++
T Consensus 81 ~~v~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~ 160 (311)
T d1kf6a2 81 DVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD 160 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEE
T ss_pred HHHHHHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeee
Confidence 00000 00000000000 000 0011 223334455555556788999999999
Q ss_pred EEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCC
Q 035902 103 ASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGEN 139 (381)
Q Consensus 103 i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~ 139 (381)
+-.++ .....+...+...++...+.++.||+|||..
T Consensus 161 Ll~d~-g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~ 196 (311)
T d1kf6a2 161 ILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGA 196 (311)
T ss_dssp EEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred eEecC-CcceeEEEEEcCCCcEEEEECCEEEEcCCCc
Confidence 87765 2332344444444566778999999999986
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2.2e-09 Score=94.23 Aligned_cols=138 Identities=14% Similarity=0.071 Sum_probs=83.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC--CcCCCC----CCCeeeecCCcc------------------
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS--LWKKRA----YDRMKLHLAKQF------------------ 58 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~--~~~~~~----~~~~~~~~~~~~------------------ 58 (381)
++||+|||+|+||++||++++++|.+|+|+||....++ .|.+.- .....-+.+..+
T Consensus 7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~~~v~ 86 (330)
T d1neka2 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (330)
T ss_dssp EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCHHHHH
Confidence 59999999999999999999999999999999875543 121100 000000000000
Q ss_pred ------------cccCCCCCCCC--------------------------CCCCCCHHHHHHHHHHHHHHhCCccccccEE
Q 035902 59 ------------CELPHMPFPSR--------------------------TPTFVPRISFINYVDNYVSQMGINPRYHRSV 100 (381)
Q Consensus 59 ------------~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (381)
..-...++..+ .........+...+.+..++.++.++..+.+
T Consensus 87 ~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~~~v~~~~~~~~ 166 (330)
T d1neka2 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred HHHHHhHHHHHHHhhccccccccCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 00000111000 0011224567777878888888888888888
Q ss_pred EEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCC
Q 035902 101 ESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENG 140 (381)
Q Consensus 101 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~ 140 (381)
..+..+++........-+...++...+.++.||+|||...
T Consensus 167 ~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~ 206 (330)
T d1neka2 167 LDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (330)
T ss_dssp EEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred EEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence 8776654333322333343445667899999999999873
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.02 E-value=1.6e-11 Score=97.00 Aligned_cols=149 Identities=23% Similarity=0.335 Sum_probs=86.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHHHH
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINYVD 84 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (381)
+|+|||||++|+.+|..|++ +.+|+|+++++..... .. .+. . ..........+..+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~--~~---~~~--------~--------~~~~~~~~~~~~~~~~ 59 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYS--KP---MLS--------H--------YIAGFIPRNRLFPYSL 59 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCC--ST---THH--------H--------HHTTSSCGGGGCSSCH
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccc--cc---chh--------h--------hhhhhhhhhhhhHHHH
Confidence 69999999999999999975 6799999987632210 00 000 0 0001111222223334
Q ss_pred HHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC-CCCCCCCCCcceeecCCCCC
Q 035902 85 NYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP-EVPGLGSFEGEYMHSSKYEN 163 (381)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~-~~~g~~~~~~~~~~~~~~~~ 163 (381)
+..++.++++++++.+..++... . +...++ .++.||.+|+|+|..|..+ .-.|++.-.+ +...+...
T Consensus 60 ~~~~~~~v~~~~~~~v~~i~~~~--~---~~~~~~-----~~i~~D~li~a~G~~~~~~~~~~gl~~~~~--i~v~~~~~ 127 (167)
T d1xhca1 60 DWYRKRGIEIRLAEEAKLIDRGR--K---VVITEK-----GEVPYDTLVLATGAPNVDLARRSGIHTGRG--ILIDDNFR 127 (167)
T ss_dssp HHHHHHTEEEECSCCEEEEETTT--T---EEEESS-----CEEECSEEEECCCEECCHHHHHTTCCBSSS--EECCTTSB
T ss_pred HHHHhccceeeeecccccccccc--c---cccccc-----cccccceeEEEEEecCCchhhhcCceeCCc--eeeccccE
Confidence 45566688899999998886532 2 444444 5799999999999875422 1124433221 22222221
Q ss_pred CCCCCCCeE-----------EEEcCCCCHHHHHHHHhh
Q 035902 164 GGKFIGKNV-----------LVVGCGNSGMEIAYDLSS 190 (381)
Q Consensus 164 ~~~~~~~~v-----------~viG~G~~~~e~a~~l~~ 190 (381)
. ..+.+ .++|++..|++.+..+++
T Consensus 128 t---~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~ 162 (167)
T d1xhca1 128 T---SAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLAD 162 (167)
T ss_dssp C---SSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHH
T ss_pred e---cCCCeEEeeecccCCCeEEChHHHHHHHHHHHHH
Confidence 1 11222 345677788888887775
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.01 E-value=1.9e-09 Score=92.26 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=78.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCC------------------------Cee-eecC-C
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYD------------------------RMK-LHLA-K 56 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~------------------------~~~-~~~~-~ 56 (381)
.||+|||||++|+++|+.|++.|+ +|+|+|+++.+...+..-... ... .... .
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 81 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence 589999999999999999999997 899999988665432210000 000 0000 0
Q ss_pred cccccCCCCCC-CCCCC-CCCHHHHHHHHHH-H-HHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEE
Q 035902 57 QFCELPHMPFP-SRTPT-FVPRISFINYVDN-Y-VSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYL 132 (381)
Q Consensus 57 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 132 (381)
........... ..... ..........+.. . ....+..+.++++++.+...+ +...+.+.++. ++.+++.+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~v~v~~~~g~-~~~~~~~ad~v 158 (288)
T d3c96a1 82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERD--GRVLIGARDGH-GKPQALGADVL 158 (288)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEET--TEEEEEEEETT-SCEEEEEESEE
T ss_pred EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecC--CcEEEEEEcCC-CCeEEEeecee
Confidence 00000000000 00011 1112222222222 2 233467788889998888766 55667777753 34468999999
Q ss_pred EEccCCCCC
Q 035902 133 VVATGENGL 141 (381)
Q Consensus 133 IlAtG~~~~ 141 (381)
|.|.|.+..
T Consensus 159 i~ADG~~S~ 167 (288)
T d3c96a1 159 VGADGIHSA 167 (288)
T ss_dssp EECCCTTCH
T ss_pred eccCCccce
Confidence 999998843
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.01 E-value=4.9e-10 Score=93.50 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=68.9
Q ss_pred cCCCeEEccC-cceEeCCeEEEc--------CCcEeeccEEEEecCCCCCcc--------hhccccCCcccccCCCCCCC
Q 035902 275 RKGEIQVFPS-ITSINRNEVEFE--------NGKIEEFEAIIFATGYKSTVR--------NWLKRADKDFFDEYGMPKRN 337 (381)
Q Consensus 275 ~~~~v~~~~~-v~~v~~~~v~~~--------~g~~~~~D~vi~a~G~~p~~~--------~~~~~~~~~~~~~~g~~~~~ 337 (381)
...+++++.+ -.......+... ..+.+++|.++++++.+|... .+.. ...++..++|++.+|
T Consensus 115 ~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~-~~~gv~~~~G~I~vd 193 (238)
T d1aoga1 115 DTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQL-QNAGVMIKNGGVQVD 193 (238)
T ss_dssp HSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCCEEECCCCCEEECCGGGCG-GGTTCCEETTEECCC
T ss_pred cccccEEEEEEeeccccccccccccccccccccccccccceeeecccccccccccccceeeecc-cccEEEEcCCeEEec
Confidence 3567777766 222223222221 124677888888776665543 2222 335665568999999
Q ss_pred CCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhcc
Q 035902 338 CPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLAL 376 (381)
Q Consensus 338 ~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l 376 (381)
+.++|+.|+|||+|||.+.+. .|..+|+.+|++|.+..
T Consensus 194 -e~~~T~~~~iyAvGDv~~~~~l~~~A~~eg~~aa~~i~g~~ 234 (238)
T d1aoga1 194 -EYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTT 234 (238)
T ss_dssp -TTCBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSSS
T ss_pred -CCeeeccCCEEEEEEecCCccchhhHHHHHHHHHHHHcCCC
Confidence 688899999999999998865 79999999999998754
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.98 E-value=1.4e-10 Score=102.47 Aligned_cols=38 Identities=34% Similarity=0.423 Sum_probs=36.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
.++|+|||||++|++||+.|+++|++|+|||+++.+||
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG 67 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 67 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 37899999999999999999999999999999998887
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.90 E-value=2.3e-09 Score=79.62 Aligned_cols=59 Identities=29% Similarity=0.351 Sum_probs=51.3
Q ss_pred CCCCCCC----CCcceeecCCCCCC--CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 144 EVPGLGS----FEGEYMHSSKYENG--GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 144 ~~~g~~~----~~~~~~~~~~~~~~--~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+||..+ |.|+-+++|..++. .-+.+|+++|||+|.+|+|.|.+|++..++|++++|++
T Consensus 3 ~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~ 67 (130)
T d1vdca2 3 SFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 67 (130)
T ss_dssp CCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecc
Confidence 4566554 67778888888875 36799999999999999999999999999999999998
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.89 E-value=3e-10 Score=93.72 Aligned_cols=38 Identities=21% Similarity=0.566 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
++|++||||||+|+.||..+++.|.+|+|||++. +||.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~-~GG~ 42 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-LGGT 42 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC-TTHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCCc
Confidence 5999999999999999999999999999999874 5653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=4.3e-09 Score=87.53 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSA 39 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g 39 (381)
+|||+||||||||++||.++++.|.+|+|||+....+
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~ 39 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP 39 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 5999999999999999999999999999999876433
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.86 E-value=1.1e-10 Score=93.60 Aligned_cols=111 Identities=17% Similarity=0.154 Sum_probs=67.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHH
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFI 80 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
| +.+|+|||||++|+.+|..|++.|.+++|++..+.....+..... +..+.... ...
T Consensus 2 m-~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l-------~~~~~~~~------------~~~--- 58 (183)
T d1d7ya1 2 L-KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPL-------SKDFMAHG------------DAE--- 58 (183)
T ss_dssp C-CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGG-------GTTHHHHC------------CGG---
T ss_pred C-CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHH-------hhhhhhhh------------hhh---
Confidence 5 467999999999999999999999877776654422211110000 00000000 000
Q ss_pred HHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCC
Q 035902 81 NYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIP 143 (381)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~ 143 (381)
..........+++++.+.++..++.+. .. +.+.++ +++.||.||+|+|..|...
T Consensus 59 ~~~~~~~~~~~i~~~~~~~v~~i~~~~--~~--~~~~~g-----~~~~~D~vi~a~G~~p~~~ 112 (183)
T d1d7ya1 59 KIRLDCKRAPEVEWLLGVTAQSFDPQA--HT--VALSDG-----RTLPYGTLVLATGAAPRAV 112 (183)
T ss_dssp GSBCCGGGSTTCEEEETCCEEEEETTT--TE--EEETTS-----CEEECSEEEECCCEEECCE
T ss_pred hHHHHHhhcCCeEEEEecccccccccc--ce--eEecCC-----cEeeeeeEEEEEEEEcccc
Confidence 000011223467788888888887654 33 677776 7899999999999887643
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.83 E-value=1.8e-10 Score=92.08 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILEREDCS 38 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~~~ 38 (381)
++|+|||||++|+.+|..|++.+. +|+|||+++..
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~ 39 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY 39 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence 689999999999999999999874 79999988743
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=8.5e-09 Score=89.31 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|+||++||+++++.| +|+||||.+..+|
T Consensus 7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG 43 (305)
T d1chua2 7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG 43 (305)
T ss_dssp ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-
T ss_pred cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCC
Confidence 599999999999999999999888 9999999986655
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.78 E-value=1.5e-09 Score=87.62 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGL 246 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
.++||+|||+|++|+++|..|+++|. +|+++.|++ .+......... ....+......
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~-~~gg~~~~~~~---~~~~~~~~~~~------------------ 60 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE-YVGGLSTSEIP---QFRLPYDVVNF------------------ 60 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS-SCSTHHHHTSC---TTTSCHHHHHH------------------
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC-cccchhhhhcc---ccccccccccc------------------
Confidence 47999999999999999999999997 599999988 33221111000 00000000000
Q ss_pred CCCCCCCcccccccCCCccccchhhhhhcCCCeEEccCcceEeCCeEEEcCCcEeeccEEEEecCCCCCcchh--ccccC
Q 035902 247 ERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPSITSINRNEVEFENGKIEEFEAIIFATGYKSTVRNW--LKRAD 324 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~--~~~~~ 324 (381)
...........+... .++........+.....+|.+++++|..+..... .. ..
T Consensus 61 -----------------------~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~-~~ 115 (196)
T d1gtea4 61 -----------------------EIELMKDLGVKIICG-KSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKE-AL 115 (196)
T ss_dssp -----------------------HHHHHHTTTCEEEES-CCBSTTSBCHHHHHHTTCCEEEECCCCCEECCCHHHHH-HT
T ss_pred -----------------------hhhhhhccceeEEee-EEeccceeeeehhhccccceeeEEeccccCCccccccc-cc
Confidence 011111111111111 1111111222233345688999999866443221 11 11
Q ss_pred Cc-ccccCCCCCCCCCCCCCCCCcEEEEeccccccc---CccHHHHHHHHHhhhcc
Q 035902 325 KD-FFDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH---GISIDAKNIANDINLAL 376 (381)
Q Consensus 325 ~~-~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~---~a~~~a~~~a~~i~~~l 376 (381)
.. .+...+....+.....++.+.+|+.||++++.. .+..+++.++..+...+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~~av~a~~~g~~~a~~v~r~~ 171 (196)
T d1gtea4 116 SPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYI 171 (196)
T ss_dssp TTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceeccccccCCCcccccccccccCCcchHHHHHHHHhhhehhHhhcc
Confidence 11 244455555554455678899999999988765 44566667777666544
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.77 E-value=2.6e-09 Score=89.78 Aligned_cols=203 Identities=14% Similarity=0.179 Sum_probs=104.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhH------------HHHHHHHhhCc-HHHHHHHHHH-Hhhh
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIV------------FAGMLLLKFLP-CKLVDFIVVM-LSKM 236 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~------------~~~~~~~~~l~-~~~~~~~~~~-~~~~ 236 (381)
+|+|||+|++|+-+|..|++.|.+|.++.+.+ .+-..... ........... ..+....... ....
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN-KLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 82 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-SSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-CCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHH
Confidence 58999999999999999999999999999876 22110000 00001110000 0011111000 0001
Q ss_pred hhcCccccCCCCCCCCCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeC--C---eEEEcCCcEeeccEEEEe
Q 035902 237 KFGNLFKYGLERPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINR--N---EVEFENGKIEEFEAIIFA 309 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~--~---~v~~~~g~~~~~D~vi~a 309 (381)
...-+...++...................+...+.+.+++.+++++.+ |+.+.. + .+.+++++.+.+|.||+|
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~A 162 (251)
T d2i0za1 83 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIA 162 (251)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEEC
T ss_pred HHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEc
Confidence 111111222221111000000000011112233456667789999887 777753 3 467789999999999999
Q ss_pred cCCCCCcch--------hccccCCcc-ccc--CCCCCC---CC-CCCCCCCCcEEEEeccccc------cc--CccHHHH
Q 035902 310 TGYKSTVRN--------WLKRADKDF-FDE--YGMPKR---NC-PNHWKGENGLYCAGFSRTG------LH--GISIDAK 366 (381)
Q Consensus 310 ~G~~p~~~~--------~~~~~~~~~-~~~--~g~~~~---~~-~~~~~~~~~ifa~Gd~~~~------~~--~a~~~a~ 366 (381)
+|-...+.. +.. . .+. +.+ .+.+.. +. ....+..|++|++|++... +. .|...|+
T Consensus 163 tGg~S~p~~Gs~g~g~~~a~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~ 240 (251)
T d2i0za1 163 VGGKSVPQTGSTGDGYAWAE-K-AGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGR 240 (251)
T ss_dssp CCCSSSGGGSCSSHHHHHHH-H-TTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHH
T ss_pred cCCccccccCCCcccchhcc-c-ceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHH
Confidence 998754421 111 1 121 110 011111 11 1122567899999987532 21 6778899
Q ss_pred HHHHHhhhcc
Q 035902 367 NIANDINLAL 376 (381)
Q Consensus 367 ~~a~~i~~~l 376 (381)
.++..+.++.
T Consensus 241 ~a~~~~~~~~ 250 (251)
T d2i0za1 241 IAGTTAGENA 250 (251)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9888887654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=3e-09 Score=91.75 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=37.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK 43 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~ 43 (381)
+||+|||||++|++||+.|+++|.+|+|+|+++++||...
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~ 41 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceE
Confidence 8999999999999999999999999999999999999543
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.74 E-value=3.6e-08 Score=87.75 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHh------CCCCeEEEecCCCCCCCcCCC-------------------CCCC-------e
Q 035902 3 EVPVVIVGAGPAGLATSACLNN------LSVPNIILEREDCSASLWKKR-------------------AYDR-------M 50 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~------~g~~v~lie~~~~~g~~~~~~-------------------~~~~-------~ 50 (381)
++||+||||||||++||+.|++ .|++|+|||+...+|...... .... .
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~ 111 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 111 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceE
Confidence 4899999999999999999997 799999999998775432110 0000 0
Q ss_pred eeecCCcccccCCCC---CCCCCCCCCCHHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEee------cCC
Q 035902 51 KLHLAKQFCELPHMP---FPSRTPTFVPRISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKN------TAL 121 (381)
Q Consensus 51 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~ 121 (381)
..............+ .............+..++.+.++..++.+.....+..+...+....-.+...+ +..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 191 (380)
T d2gmha1 112 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAP 191 (380)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCE
T ss_pred EEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccc
Confidence 000001001111111 00011123457788889999999999988888888888775522211111110 000
Q ss_pred C----ceEEEEeCEEEEccCCC
Q 035902 122 D----AYEEYVARYLVVATGEN 139 (381)
Q Consensus 122 ~----~~~~~~~d~vIlAtG~~ 139 (381)
. ......++..+++.|+.
T Consensus 192 ~~~~~~~~~~~~~~~v~~~G~~ 213 (380)
T d2gmha1 192 KTTFERGLELHAKVTIFAEGCH 213 (380)
T ss_dssp EEEEECCCEEECSEEEECCCTT
T ss_pred cccccccccccccEEEEeeeCC
Confidence 0 01245788999999986
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.73 E-value=4.3e-09 Score=91.67 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=37.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWK 43 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~ 43 (381)
|+|+|||||+||++||+.|++.|++|+|+|+++.+||...
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 41 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR 41 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceE
Confidence 6899999999999999999999999999999999998543
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.71 E-value=3.4e-08 Score=87.29 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHh----CCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNN----LSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~----~g~~v~lie~~~~~g~ 40 (381)
++||+|||+|+||++||++|++ .|.+|+||||....++
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg 62 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence 4899999999999999999975 5899999999876554
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.71 E-value=2e-08 Score=84.40 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=103.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhh----------------H-------H-HHHHHHhhCcHHH
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREI----------------V-------F-AGMLLLKFLPCKL 225 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~----------------~-------~-~~~~~~~~l~~~~ 225 (381)
.+|+|||+|++|+-+|..|++.|.+|.++++.+. +-.... . + +...+..+.+.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~-~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~-- 81 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK-IGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW-- 81 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS-SCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH--
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC-CCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhccc--
Confidence 4799999999999999999999999999998862 211000 0 0 00011111111
Q ss_pred HHHHHHHHhhhhhcCccccCCCCCCC-CCcccccccCCCccccchhhhhhcCCCeEEccC--cceEeCC-------eEEE
Q 035902 226 VDFIVVMLSKMKFGNLFKYGLERPKK-GPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS--ITSINRN-------EVEF 295 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~v~~~-------~v~~ 295 (381)
....++. ..+...... .... ........+...+.+.+++.+++++.+ |+++... .+..
T Consensus 82 --~~~~~~~--------~~g~~~~~~~~~~~--~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~ 149 (253)
T d2gqfa1 82 --DFISLVA--------EQGITYHEKELGQL--FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQ 149 (253)
T ss_dssp --HHHHHHH--------HTTCCEEECSTTEE--EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEE
T ss_pred --chhhhhh--------hcCcceeeecCCcc--ccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEe
Confidence 1111111 111111000 0000 011112223334566667778999887 7776431 1345
Q ss_pred cCCcEeeccEEEEecCCCCCcchhcc------ccCCcc--ccc-----CC--CCCCCCCCC-CCCCCcEEEEeccc----
Q 035902 296 ENGKIEEFEAIIFATGYKSTVRNWLK------RADKDF--FDE-----YG--MPKRNCPNH-WKGENGLYCAGFSR---- 355 (381)
Q Consensus 296 ~~g~~~~~D~vi~a~G~~p~~~~~~~------~~~~~~--~~~-----~g--~~~~~~~~~-~~~~~~ifa~Gd~~---- 355 (381)
.+++++.+|.||+|||-...+..-.. +...+. .++ .| ...++...+ ....||+|++|-+.
T Consensus 150 ~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g 229 (253)
T d2gqfa1 150 VNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTG 229 (253)
T ss_dssp ETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEE
T ss_pred cCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeee
Confidence 67889999999999998755422100 010111 111 11 112332222 34679999999543
Q ss_pred --cccc--CccHHHHHHHHHhhh
Q 035902 356 --TGLH--GISIDAKNIANDINL 374 (381)
Q Consensus 356 --~~~~--~a~~~a~~~a~~i~~ 374 (381)
++.+ +|-..|..+++.|.+
T Consensus 230 ~~gg~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 230 WLGGYNFQWAWSSAYACALSISR 252 (253)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHT
T ss_pred ecCCEehhhhHhHHHHHHHHHhc
Confidence 3333 888999999999875
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.70 E-value=8.7e-09 Score=86.98 Aligned_cols=174 Identities=17% Similarity=0.156 Sum_probs=88.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCCCCC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLERPK 250 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (381)
.++|||+|+.|+.+|..+++.|.+|.++.+... -......+ +...+.+...... .........+++...
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~---GGtc~n~g----ciPsK~l~~~~~~---~~~~~~~~~~G~~~~- 71 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSRL---GGTCVNVG----CVPKKIMFNAASV---HDILENSRHYGFDTK- 71 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSST---THHHHHTS----HHHHHHHHHHHHH---HHHHHHGGGGTCCCC-
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---CCeEEeeC----CcchHHHHhhhhc---ccchhccccccccch-
Confidence 479999999999999999999999999997541 00000000 0000000000000 000112223333211
Q ss_pred CCCccccccc---CCCccccchhhhhhcCCCeEEccCcceEe-CCeEEE-------------cCCcEeeccEEEEecCCC
Q 035902 251 KGPFYFKAIT---GQTPTIDVGAMDKIRKGEIQVFPSITSIN-RNEVEF-------------ENGKIEEFEAIIFATGYK 313 (381)
Q Consensus 251 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~v~~v~-~~~v~~-------------~~g~~~~~D~vi~a~G~~ 313 (381)
....+..... ......+..+...+++.+|+++.+-.++. ...+.. .+++.+.+|.+++|||.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~ 151 (259)
T d1onfa1 72 FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNK 151 (259)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCC
T ss_pred hhhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCC
Confidence 0000000000 00012223344556667888876611111 111111 234579999999999999
Q ss_pred C-----CcchhccccCCcccccCCCCCCCCCCCCCCCCcEEEEeccccc
Q 035902 314 S-----TVRNWLKRADKDFFDEYGMPKRNCPNHWKGENGLYCAGFSRTG 357 (381)
Q Consensus 314 p-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~ 357 (381)
| +++.+-. +..++.+.++++.++. ...+...++|++||+...
T Consensus 152 P~~~~~~~~~~~l-~~~~i~ts~~~~~~d~-~~~t~Vig~gaiGdv~~~ 198 (259)
T d1onfa1 152 PVGRSPDTENLKL-EKLNVETNNNYIVVDE-NQRTSVNNIYAVGDCCMV 198 (259)
T ss_dssp BCCBCCTTTTSSC-TTTTCCBSSSCEEECT-TCBCSSSSEEECSTTEEE
T ss_pred Ccccccccccccc-ccceeeeccccccccc-CCceeEeeEEEEEEeeeh
Confidence 9 3433322 4466677788887773 335678999999998654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.69 E-value=7.1e-09 Score=88.44 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=39.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCCee
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILEREDCSASLWKKRAYDRMK 51 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~ 51 (381)
.||+|||||++|++||+.|+++|+ +|+|+|+++.+||.......+...
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~ 49 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGIN 49 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEE
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEE
Confidence 489999999999999999999997 699999999999865443333333
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.66 E-value=1e-08 Score=84.58 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=35.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
++|||+||||||||++||.++++.|.+|+|||+....++
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~ 40 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEG 40 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCc
Confidence 469999999999999999999999999999998765444
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.65 E-value=8.9e-09 Score=85.20 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=36.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+|||+||||||||++||..+++.|.+|+|||+...+||.
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~ 44 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV 44 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHH
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCe
Confidence 599999999999999999999999999999999888773
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.64 E-value=9.4e-09 Score=85.28 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC---CCeEEEecCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLS---VPNIILEREDCSASL 41 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g---~~v~lie~~~~~g~~ 41 (381)
.+|+||||||||++||.++++.+ .+|+|||+. .+||.
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~ 41 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGA 41 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHH
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCce
Confidence 57999999999999999887765 579999985 46663
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2e-08 Score=88.96 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=37.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASL 41 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~ 41 (381)
+.+|+|||||++||+||+.|+++|++|+|+|+++.+||.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr 43 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 43 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCccc
Confidence 478999999999999999999999999999999999984
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.58 E-value=6e-08 Score=77.09 Aligned_cols=116 Identities=20% Similarity=0.133 Sum_probs=67.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
..+|+|||||++|+.+|..|++.|.+++|++..+.....+..... ...+. ............
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~-----~~~~~~~~~~~~ 64 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPL-------------SKAYL-----AGKATAESLYLR 64 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGG-------------GTTTT-----TTCSCSGGGBSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHH-------------HHHHH-----Hhhhhhhhhhhh
Confidence 368999999999999999999999998888876533211110000 00000 000000011111
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccCCCCCCCCC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATGENGLIPEV 145 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG~~~~~~~~ 145 (381)
...........+..+..+..++.+. .. +...++ .++.+|.+++++|..|..|.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~--v~~~~~-----~~i~~d~~i~~~G~~~~~~~~ 118 (185)
T d1q1ra1 65 TPDAYAAQNIQLLGGTQVTAINRDR--QQ--VILSDG-----RALDYDRLVLATGGRPLIPNC 118 (185)
T ss_dssp CHHHHHHTTEEEECSCCEEEEETTT--TE--EEETTS-----CEEECSEEEECCCEEEEEECC
T ss_pred hhhhhcccceeeeccceeeeecccc--cE--EEeece-----eEEEeeeeeeeeecccCCCCc
Confidence 1222333344555566666665433 33 666555 789999999999998766654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.58 E-value=1.7e-08 Score=87.48 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=37.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLW 42 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~ 42 (381)
.++|+|||||++|++||+.|+++|.+|+|+|+++++||..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~ 41 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 41 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence 4789999999999999999999999999999999999954
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=98.57 E-value=7.1e-08 Score=85.70 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
++||||||+|++|+.+|.+|++.|++|+|+|+.
T Consensus 7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 599999999999999999999999999999985
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.56 E-value=1.2e-08 Score=88.83 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5899999999999999999999999999999865
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.48 E-value=7.1e-08 Score=81.14 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+++|+|||||++|+++|+.|+++|.+|+|||++...++
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~ 43 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 48999999999999999999999999999999764333
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.46 E-value=3.2e-07 Score=79.75 Aligned_cols=33 Identities=24% Similarity=0.557 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.|+|||+|.+|+-+|..|++.|.+|.++.+.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999875
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.45 E-value=2.6e-07 Score=70.53 Aligned_cols=36 Identities=31% Similarity=0.488 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~ 202 (381)
..+++++|||||.+|+|+|..+.++|+ +|++++|++
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 357899999999999999999999985 599999987
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=98.43 E-value=2.3e-07 Score=82.22 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.||||||+|++|+.+|.+|++.|++|+|+|+..
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 589999999999999999999999999999863
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.40 E-value=1.1e-07 Score=77.96 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~ 40 (381)
+|||+||||||||++||..+++.|.+|+|||+.. +||
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG 39 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGG 39 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCc
Confidence 5999999999999999999999999999999975 454
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.35 E-value=8.1e-07 Score=68.27 Aligned_cols=69 Identities=7% Similarity=-0.089 Sum_probs=51.2
Q ss_pred ccEEEE--CCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHH
Q 035902 4 VPVVIV--GAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFIN 81 (381)
Q Consensus 4 ~~vvII--GaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (381)
..++|+ |||+.|+.+|..|+++|.+|+|+++.+.++.. . ..+...
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-------------------------------~--~~~~~~ 86 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-------------------------------H--FTLEYP 86 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-------------------------------H--HTTCHH
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-------------------------------c--chhHHH
Confidence 345555 99999999999999999999999998643210 0 012234
Q ss_pred HHHHHHHHhCCccccccEEEEEEE
Q 035902 82 YVDNYVSQMGINPRYHRSVESASY 105 (381)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~i~~ 105 (381)
.+...+.+.++++++++++.++..
T Consensus 87 ~~~~~l~~~GV~i~~~~~v~~i~~ 110 (156)
T d1djqa2 87 NMMRRLHELHVEELGDHFCSRIEP 110 (156)
T ss_dssp HHHHHHHHTTCEEEETEEEEEEET
T ss_pred HHHHHHhhccceEEeccEEEEecC
Confidence 455566677999999999998874
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=4.3e-07 Score=71.03 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=35.0
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
....+|+|+|||+|+.|+++|..|+++|.+|+++.+.+
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 33468999999999999999999999999999999987
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=2.1e-07 Score=80.45 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=36.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEecCCCCCCCcC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL--SVPNIILEREDCSASLWK 43 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~--g~~v~lie~~~~~g~~~~ 43 (381)
++||+||||||+|++||+.|+++ |++|+|+|+++.+||.+.
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 92 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence 48999999999999999999975 899999999999888543
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=6.4e-06 Score=60.35 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=74.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+|||+|-+++..|..|.+...+|+++-+.+.+ ...+.+.+.
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~-----------------------------------~~~~~~~~~ 71 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF-----------------------------------RAEKILIKR 71 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC-----------------------------------CCCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc-----------------------------------cchhHHHHH
Confidence 478999999999999999999998999999887521 122455666
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCc-eEEEEeCEEEEccC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDA-YEEYVARYLVVATG 137 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~-~~~~~~d~vIlAtG 137 (381)
+.+..+..++.++.++.+.++.-++ .+.-.|++.+...++ .+.+.+|.|+++.|
T Consensus 72 ~~~~~~~~~i~~~~~~~v~~i~G~~-~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 72 LMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp HHHHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred HHHhhcccceeEecceEEEEEECCC-CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 6666666677888999999988764 222336676654433 36799999999987
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=2.6e-06 Score=65.79 Aligned_cols=123 Identities=15% Similarity=0.029 Sum_probs=61.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEE-ecC---CCCCCCcCC----CCCCCeeeecCCcccccCCCCCCCCCCCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIIL-ERE---DCSASLWKK----RAYDRMKLHLAKQFCELPHMPFPSRTPTFVP 75 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~li-e~~---~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (381)
++|+|||||..|+-+|..+++.|.+++.. .+. ......+.. ..................... ...... .
T Consensus 30 krVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~-~ 106 (162)
T d1ps9a2 30 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA--SKPGQG-L 106 (162)
T ss_dssp SEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSC--SCTTTT-S
T ss_pred CceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccceeccccceEEEEEecc--chhccc-c
Confidence 68999999999999999999998754322 111 000000000 000000000000000000000 000000 0
Q ss_pred HHHHHHHHHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 76 RISFINYVDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
............++.++.+..++.+..++.+ +. .+.. ++ .++.+.||.||+|+|
T Consensus 107 ~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~---gv-~~~~-~g---~e~~i~aD~Vv~A~G 160 (162)
T d1ps9a2 107 GKTTGWIHRTTLLSRGVKMIPGVSYQKIDDD---GL-HVVI-NG---ETQVLAVDNVVICAG 160 (162)
T ss_dssp CTTTHHHHHHHHHHTTCEEECSCEEEEEETT---EE-EEEE-TT---EEEEECCSEEEECCC
T ss_pred chhhhHHHHHHHhhCCeEEEeeeEEEEEcCC---CC-EEec-CC---eEEEEECCEEEECCC
Confidence 1112233455677779998999999887532 32 2222 22 346799999999999
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.17 E-value=6.7e-07 Score=79.24 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=34.4
Q ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 1 ME-EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 1 M~-~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
|. +|||||||+|++|+.+|.+|++.|++|+|+|+....
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 53 599999999999999999999999999999997543
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=9.2e-06 Score=59.43 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=71.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+|||+|-+.+-.|..|.+...+|+|+-+.+.+. ..+.+.
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~-----------------------------------~~~~~~-- 72 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK-----------------------------------ADQVLQ-- 72 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC-----------------------------------SCHHHH--
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc-----------------------------------cccccc--
Confidence 3789999999999999999999988999998775211 111211
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEccC
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVATG 137 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlAtG 137 (381)
+...+..++++++++++.++.-+++ ..-.+.+.+...++.+++.+|.|+++.|
T Consensus 73 -~~~~~~~~I~v~~~~~v~~i~G~~~-~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 73 -DKLRSLKNVDIILNAQTTEVKGDGS-KVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp -HHHHTCTTEEEESSEEEEEEEESSS-SEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred -cccccccceeEEcCcceEEEEcccc-ceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 2222334688999999999987542 3334777777667778999999999988
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=98.16 E-value=6.2e-07 Score=78.79 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHH-----hCCCCeEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLN-----NLSVPNIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~-----~~g~~v~lie~~~~~ 38 (381)
.|||+||||||+|+++|..|+ +.|++|+|||+.+.+
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 399999999999999999996 569999999998644
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.13 E-value=7.6e-07 Score=73.73 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=32.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV-PNIILEREDC 37 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~~ 37 (381)
++|||+||||||||++||..+++.|. +|+|+|+...
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~ 38 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH 38 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence 46999999999999999999999886 5889998764
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.11 E-value=1.8e-05 Score=60.00 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~ 36 (381)
.+|+|||||-.|+-+|..+.+.|.+ |+++.+.+
T Consensus 46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 5799999999999999999999875 88887764
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.10 E-value=1.6e-06 Score=71.39 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.|||+||||||||++||.++++.|. +|+|+|+..
T Consensus 3 ~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~ 37 (238)
T d1aoga1 3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM 37 (238)
T ss_dssp SBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence 4999999999999999999999887 578888753
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.08 E-value=3.2e-06 Score=72.15 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.-+|+|||+|++|+-+|..|.+.|.+|+++.+.+
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~ 40 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 40 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 3469999999999999999999999999999876
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.04 E-value=6.5e-07 Score=75.76 Aligned_cols=94 Identities=9% Similarity=0.060 Sum_probs=55.5
Q ss_pred cceEeCC----eEEEcCCcEeeccEEEEecCCCCCcchhccc-cCC-----cccccCCCCCCC---CCCCCCCCCcEEEE
Q 035902 285 ITSINRN----EVEFENGKIEEFEAIIFATGYKSTVRNWLKR-ADK-----DFFDEYGMPKRN---CPNHWKGENGLYCA 351 (381)
Q Consensus 285 v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~-~~~-----~~~~~~g~~~~~---~~~~~~~~~~ifa~ 351 (381)
+..+... .+.+.+|+.+++|.++.+............. ... ..++..++..++ .+..+++.++||++
T Consensus 233 v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~v~~~ 312 (347)
T d1b5qa1 233 VREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQLRAPVGRVYFT 312 (347)
T ss_dssp EEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHHHHCCBTTEEEC
T ss_pred cccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhhcccccCCEEEE
Confidence 5555433 4677899999999999986532211000000 000 002223333332 11223566899999
Q ss_pred ecccccc--c---CccHHHHHHHHHhhhcccc
Q 035902 352 GFSRTGL--H---GISIDAKNIANDINLALTD 378 (381)
Q Consensus 352 Gd~~~~~--~---~a~~~a~~~a~~i~~~l~~ 378 (381)
||+.+.. . .|+.+|..+|+.|++.+++
T Consensus 313 GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~ 344 (347)
T d1b5qa1 313 GEHTSEHYNGYVHGAYLSGIDSAEILINCAQK 344 (347)
T ss_dssp SGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9987642 2 6788999999999988765
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.99 E-value=4.5e-06 Score=72.61 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~ 202 (381)
-|+|+|||+|++|+-+|..|.+.+ .+|+++.|++
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 489999999999999999998876 4899999997
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.94 E-value=1.4e-05 Score=68.55 Aligned_cols=32 Identities=31% Similarity=0.601 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 69999999999999999999999999999876
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.92 E-value=1.2e-05 Score=69.31 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999876
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.92 E-value=5.5e-05 Score=55.32 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=69.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCCeeeecCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKKRAYDRMKLHLAKQFCELPHMPFPSRTPTFVPRISFINY 82 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (381)
.++|+|||+|-+.+..|..|++.-.+|+||-+.+.+. ..+.+.
T Consensus 34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r-----------------------------------a~~~~~-- 76 (130)
T d1vdca2 34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR-----------------------------------ASKIMQ-- 76 (130)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-----------------------------------SCHHHH--
T ss_pred CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc-----------------------------------cchhhh--
Confidence 4789999999999999999999988999998876321 111122
Q ss_pred HHHHHHHhCCccccccEEEEEEEeCCCC-eEEEEEeecCCCceEEEEeCEEEEc
Q 035902 83 VDNYVSQMGINPRYHRSVESASYDENAK-AWIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
++..+..++.+++++++..+.-+.... .-.+.+.+...++.+++.+|.|++|
T Consensus 77 -~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa 129 (130)
T d1vdca2 77 -QRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA 129 (130)
T ss_dssp -HHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred -hccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence 233344568889999999998764222 2236677766677789999999987
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=97.87 E-value=7.9e-06 Score=68.80 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=56.2
Q ss_pred hhhhhhcCCCeEEccC--cceEeCC----eEEEcCCcEeeccEEEEecCCCCCcchhccccCCcccccCCCCCCCCCCCC
Q 035902 269 GAMDKIRKGEIQVFPS--ITSINRN----EVEFENGKIEEFEAIIFATGYKSTVRNWLKRADKDFFDEYGMPKRNCPNHW 342 (381)
Q Consensus 269 ~~~~~~~~~~v~~~~~--v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 342 (381)
.+.+.+++.+++++.+ |+++..+ .|..++| ++.||.||+|+|.-.. .++. . .|+-.+++.+.... .
T Consensus 156 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~--~l~~-~-~G~~~~~~~p~~~~---~ 227 (276)
T d1ryia1 156 AYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSG--MFFK-Q-LGLNNADGKPYIGR---H 227 (276)
T ss_dssp HHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTH--HHHH-H-TTCCCCSSCCEEEE---E
T ss_pred HHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHH--HHHh-h-cCCCcccccceecc---c
Confidence 3455667788999887 8888764 3555555 7899999999996532 2332 2 55544444433220 0
Q ss_pred CCCCcEE-EEecccccccCccHHHHHHHHHhh
Q 035902 343 KGENGLY-CAGFSRTGLHGISIDAKNIANDIN 373 (381)
Q Consensus 343 ~~~~~if-a~Gd~~~~~~~a~~~a~~~a~~i~ 373 (381)
...+++| +.|....+...+-..|..+++-+.
T Consensus 228 p~~~~~~~~~g~~~~gi~~~p~~g~~i~~~~~ 259 (276)
T d1ryia1 228 PEDSRILFAAGHFRNGILLAPATGALISDLIM 259 (276)
T ss_dssp TTEEEEEEEECCSSCTTTTHHHHHHHHHHHHT
T ss_pred cCCCCEEECCCCCCCeEEECccHHHHHHHHHh
Confidence 1223444 666655554444455666555443
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.82 E-value=6.6e-06 Score=72.31 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=32.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.||++|||+|++|+.+|.+|++.|.+|+|+|+..
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 46999999999999999999999999999999975
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=3.6e-05 Score=62.11 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHh--------------------hCC-CeeEEEEecCcceec
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLS--------------------SCG-ACTSIVVRGPVHVLT 207 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~--------------------~~g-~~v~~i~r~~~~~~p 207 (381)
..+++++|||+|.+|+++|+.+. +.+ .+|+++.|+...-.+
T Consensus 37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ 98 (216)
T d1lqta1 37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAA 98 (216)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCC
T ss_pred ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCC
Confidence 46899999999999999999887 445 469999999844333
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.68 E-value=7e-05 Score=62.21 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..++|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46899999999999999999999999999999876
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.64 E-value=3.8e-06 Score=69.33 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=27.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
+|+|||||++|+++|++|+++|.+|+++|+.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~ 32 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDV 32 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence 5999999999999999999999877666653
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.64 E-value=1.8e-05 Score=70.16 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS-VPNIILEREDC 37 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~~ 37 (381)
.||++|||||++|+.+|.+|++.+ .+|+|+|+...
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 499999999999999999999987 69999999863
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=2.2e-05 Score=63.84 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhh--------------------CC-CeeEEEEecCcceec
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSS--------------------CG-ACTSIVVRGPVHVLT 207 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~--------------------~g-~~v~~i~r~~~~~~p 207 (381)
..+++++|||+|.+|+++|+.+.+ .+ .+|+++.|++..-.+
T Consensus 37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ 98 (225)
T d1cjca1 37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVA 98 (225)
T ss_dssp TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCC
T ss_pred ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCC
Confidence 468999999999999999999998 34 579999999843333
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.58 E-value=0.00011 Score=59.01 Aligned_cols=31 Identities=35% Similarity=0.565 Sum_probs=28.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
.|+|||+|+.|+|+|...++.|.++-+++..
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~ 34 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS 34 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence 6899999999999999999999999999754
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.58 E-value=3.3e-05 Score=61.16 Aligned_cols=174 Identities=13% Similarity=0.042 Sum_probs=111.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCcceechhhHHHHHHHHhhCcHHHHHHHHHHHhhhhhcCccccCCC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPVHVLTREIVFAGMLLLKFLPCKLVDFIVVMLSKMKFGNLFKYGLE 247 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
..++++|||||++|+++|..+++.|.++.++.+......... .. + ..........
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~-~~----~--------------------~~~~~~~~~~ 58 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPG-GQ----L--------------------TTTTDVENFP 58 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT-CG----G--------------------GGCSEECCST
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccc-cc----c--------------------ccchhhhccc
Confidence 357899999999999999999999999999986652110000 00 0 0000000000
Q ss_pred CCCCCCcccccccCCCccccchhhhhhcCCCeEEccC-cceEeCC--e-EEEcCCcEeeccEEEEecCCC-----CCcch
Q 035902 248 RPKKGPFYFKAITGQTPTIDVGAMDKIRKGEIQVFPS-ITSINRN--E-VEFENGKIEEFEAIIFATGYK-----STVRN 318 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~v~~~--~-v~~~~g~~~~~D~vi~a~G~~-----p~~~~ 318 (381)
.... ....+.+.....+.+.+.++++... |..++.. . ....+.....+|.++.++|.. |++.
T Consensus 59 --~~~~------~~~~~el~~~~~~q~~~~g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~- 129 (192)
T d1vdca1 59 --GFPE------GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATK- 129 (192)
T ss_dssp --TCTT------CEEHHHHHHHHHHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCG-
T ss_pred --cccc------cccchHHHHHHHHHHHhhcceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHH-
Confidence 0000 0000011112233344557777766 7777653 2 233455678999999999853 5553
Q ss_pred hccccCCcc-cccCCCCCCCCCCCCCCCCcEEEEeccccccc----CccHHHHHHHHHhhhcccc
Q 035902 319 WLKRADKDF-FDEYGMPKRNCPNHWKGENGLYCAGFSRTGLH----GISIDAKNIANDINLALTD 378 (381)
Q Consensus 319 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ifa~Gd~~~~~~----~a~~~a~~~a~~i~~~l~~ 378 (381)
++. .++ ++++|++.++...+.|+.|+||++|||.+.+. .|..+|..+|.++.++|++
T Consensus 130 ~~~---~~veld~~G~i~~~~~~~~Ts~~GV~a~GDv~~~~~r~~v~A~g~G~~aA~~~~~yl~~ 191 (192)
T d1vdca1 130 FLD---GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE 191 (192)
T ss_dssp GGT---TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc---CceeecCCCeEEeCCCceEecCCCEEEeeecCCcccceEEEEEechHHHHHHHHHHHhh
Confidence 333 334 88999999995567899999999999988753 7889999999999998864
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.56 E-value=2.6e-05 Score=69.08 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLS-VPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~ 36 (381)
.||++|||||++|+.+|.+|.+.+ .+|+|+|+..
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~ 51 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 51 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 389999999999999999999875 7999999985
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=97.51 E-value=0.00039 Score=59.82 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 59999999999999999999999999998765
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.45 E-value=3e-05 Score=67.65 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.||+||||||+||+.+|.+|++. .+|+|+|+..
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred CccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 38999999999999999999976 9999999985
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00021 Score=61.50 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58999999999999999999999999998765
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.44 E-value=5.1e-06 Score=68.27 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++++|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence 468999999999999999999999999999999887
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=97.39 E-value=0.00012 Score=61.46 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 58999999999999999999999999999865
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.38 E-value=3.2e-05 Score=63.05 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
.+|+|||+|+.|+.+|..|.+. +.+|+++.+.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL 36 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4899999999999999999875 56899999887
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00014 Score=49.82 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|+|.|-+|+++|..|.++|.+|+++|.+.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 4789999999999999999999999999999865
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=97.26 E-value=3.6e-05 Score=65.68 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=29.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~ 202 (381)
+|+|||+|.+|+-+|..|++.| .+|+++.|.+
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 7999999999999999999999 4799999875
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.24 E-value=9.6e-05 Score=57.50 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||||..|..+|..|.++|++|+|+|++.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 4789999999999999999999999999999986
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.15 E-value=0.00035 Score=58.26 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~ 202 (381)
-+|+|||+|++|+-+|..|++.|. +|+++.|++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 479999999999999999999995 899999987
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.0025 Score=53.96 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
-.|+|||+|..|+-+|..+++. +.+|.+++..+
T Consensus 6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~ 40 (311)
T d1kf6a2 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (311)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4689999999999999999987 56899998764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.03 E-value=0.00024 Score=55.37 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++++|||+|..|..+|..|+++|++|+++++++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 679999999999999999999999999999875
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.99 E-value=0.0036 Score=53.91 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=28.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhh----CCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSS----CGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~----~g~~v~~i~r~~ 202 (381)
-.|+|||+|..|+-+|..+++ .|.+|.++.+.+
T Consensus 22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~ 58 (356)
T d1jnra2 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58 (356)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence 469999999999998888865 688999998754
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.00033 Score=56.29 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|+.|+++|..+++.|.+|.++.+..
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 58999999999999999999999999998754
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00054 Score=53.69 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|.-++|+|||+|..|...|..+++.|++|+++|+++
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 445789999999999999999999999999999875
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.77 E-value=0.00059 Score=59.81 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=30.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhh------CCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSS------CGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~------~g~~v~~i~r~~ 202 (381)
=.|+|||+|++|.-+|..|++ .|.+|.++.|..
T Consensus 33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~ 71 (380)
T d2gmha1 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 71 (380)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence 479999999999999999997 789999999986
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.73 E-value=0.00081 Score=49.27 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++++|||+|..|..+|..|.+.|.+|+++|.++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 579999999999999999999999999999885
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.73 E-value=0.00069 Score=49.55 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|+|+|..|...|..|.+.|.+|+++|+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 59999999999999999999999999999986
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=96.72 E-value=0.0035 Score=43.66 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||+|.+|+-.|..|++...+++++.+..
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 3789999999999999999999888888776654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.65 E-value=0.00024 Score=59.81 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|||+|++|+-+|..|++.|.+|+++.|++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 479999999999999999999999999999987
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00079 Score=51.33 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|||+|..|...|..|++.|.+|+++++..
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~ 33 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCH
Confidence 59999999999999999999999999999876
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0042 Score=52.29 Aligned_cols=32 Identities=28% Similarity=0.625 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.|+|||+|..|+-+|..+++.| +|.++...+
T Consensus 8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~ 39 (305)
T d1chua2 8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP 39 (305)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred CCEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence 46999999999999999998877 899998765
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.59 E-value=0.00061 Score=51.09 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
+.++|+|||||..|+.-|..|.+.|.+|+||.+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3488999999999999999999999999999765
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.53 E-value=0.00053 Score=58.81 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 68999999999999999999999999999999865
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.52 E-value=0.00084 Score=55.13 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..++|+|||+|.+|+-+|..|+++|.+|+++.|..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45789999999999999999999999999999864
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.52 E-value=0.001 Score=51.82 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|..|...|..++..|++|+++|++.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 679999999999999999999999999999875
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.46 E-value=0.00097 Score=56.73 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 5899999999999999999999999999999888
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.45 E-value=0.0017 Score=45.90 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||+|..|..-|..|.+.|.+|++++...
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4789999999999999999999999999998764
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.44 E-value=0.0014 Score=49.32 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.-+|+|||+|.+|+.++..+.+.|.+|+++|.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 3689999999999999999999999999999875
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.0014 Score=44.46 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++.+|+++|+|.|.||..+|..|.+.|.+|+++..+.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 4578999999999999999999999999999999766
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.36 E-value=0.0015 Score=49.80 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
-+|+|||||.+|+.||..+...|..|+++|.+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 579999999999999999999999999999875
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.25 E-value=0.0017 Score=48.20 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+.+|.|||+|..|.++|+.|+.++. +++|+|.+.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 5789999999999999999999885 799999764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.16 E-value=0.0017 Score=51.33 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 49999999999999999999999999999874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.0023 Score=47.81 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEec
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRG 201 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~ 201 (381)
+..+++++|||||..|.+-+..|.+.|.+|+++...
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999999999999999999999999999754
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0019 Score=54.47 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 68999999999999999999999999999876
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0019 Score=52.64 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 58999999999999999999999999999987
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.87 E-value=0.0018 Score=54.44 Aligned_cols=32 Identities=38% Similarity=0.491 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|||+|++|+.+|..|++.|.+|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 68999999999999999999999999999875
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0027 Score=54.51 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45789999999999999999999999999998765
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.80 E-value=0.0025 Score=49.58 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|||+|.-|.+.|..|++.|.+|+++.+++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 579999999999999999999999999998865
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.0047 Score=46.29 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 1 MEEVPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
|++.+|.|||+|..|.++|+.|...++ ++.|+|.+.
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 445679999999999999999999987 799999764
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.74 E-value=0.023 Score=45.25 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--------------------CC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNL--------------------SV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~--------------------g~-~v~lie~~~ 36 (381)
++|+|||+|-.++=||..|.+. |. +|+++.+..
T Consensus 40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg 93 (225)
T d1cjca1 40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 93 (225)
T ss_dssp SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence 7899999999999999999873 55 799999876
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.73 E-value=0.0061 Score=45.43 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=31.1
Q ss_pred ccEEEEC-CCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVG-AGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIG-aG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.||| .|..|...|..|.+.|++|+++|++.
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 6899999 69999999999999999999999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0047 Score=39.86 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDCS 38 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~ 38 (381)
++|.|||||-=|.+.+.+..+.|+++.++|.+...
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 67999999999999999999999999999987643
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.70 E-value=0.005 Score=43.33 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+..+++++|||+|.+|..-+..|.+.|.+|+++....
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4578999999999999999999999999999987654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.64 E-value=0.0068 Score=46.36 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|+|+|+|.+|..+|..|.+.|.+|+++.|..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 5899999999999999999999999999999876
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.63 E-value=0.0049 Score=46.68 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||.|..|.+.|..|.+.|++|+++|++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 49999999999999999999999999999874
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.62 E-value=0.0054 Score=45.83 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
+++|+|||+|..|.++|+.|...++ +++|+|.+.
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence 4889999999999999999888886 799998764
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.41 E-value=0.0038 Score=49.69 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-.++|||+|+.|+.+|..+++.|.+|.++.+++
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 468999999999999999999999999999876
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.37 E-value=0.0056 Score=47.12 Aligned_cols=31 Identities=35% Similarity=0.277 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
+|.|||+|..|.+.|..|++.|.+|+++.+.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 5999999999999999999999999999764
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.35 E-value=0.0029 Score=51.08 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCC-------CeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCG-------ACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g-------~~v~~i~r~~ 202 (381)
+.+|+|||+|++|+.+|..|++.| .+|+++.+.+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence 569999999999999999999987 4799999987
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.31 E-value=0.0075 Score=44.66 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
.+|.|||+|..|.++|+.|...++ +++|+|..+
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 679999999999999999999876 799999764
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=95.28 E-value=0.0094 Score=44.61 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+.+|.|||+|..|.++|+.|..+++ ++.|+|.+.
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4789999999999999999999988 799999864
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0085 Score=45.56 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|+|+|-++.++++.|.+.|.+++|+.|+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 3789999999999999999999999999998875
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.22 E-value=0.0073 Score=44.55 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
++|.|||+|..|.++|+.|..++. +++|+|.+.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 679999999999999999998876 799998764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.012 Score=40.99 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILEREDC 37 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~ 37 (381)
.+|.|||||--|.+.|.++.+.|+++.++|++..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 6799999999999999999999999999998764
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.08 E-value=0.013 Score=52.10 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=40.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSVPNIILEREDCSASLWKK 44 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~~~g~~~~~ 44 (381)
+++||+|+|-|..=..+|..|.+.|.+|+=+|+++..||.|..
T Consensus 5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS 47 (491)
T d1vg0a1 5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 47 (491)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence 3599999999999999999999999999999999999998764
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.03 E-value=0.012 Score=43.13 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
.+|.|||+|..|.++|+.|..+++ ++.|+|...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 579999999999999999999987 799999765
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.0072 Score=48.38 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|+.|+.+|..+++.|.+|.++.+++
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 68999999999999999999999999999876
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.011 Score=41.84 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=30.5
Q ss_pred ccEEEECCCH-----------HHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGP-----------AGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~-----------aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|||+|| ++..++.+|++.|++++++..++
T Consensus 8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP 51 (127)
T d1a9xa3 8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP 51 (127)
T ss_dssp CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence 7899999996 78899999999999999999886
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=94.95 E-value=0.011 Score=43.47 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|.|||+|..|.++|+.|..++. ++.++|...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~ 35 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence 579999999999999999998877 899998764
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=94.90 E-value=0.013 Score=43.05 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+|.|||+|..|.++|+.|...+. ++.|+|.+.
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 59999999999999999999875 899999765
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.017 Score=40.36 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=30.8
Q ss_pred cccEEEECCCH-----------HHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGP-----------AGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~-----------aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||+|| ++..|+.+|++.|++++++..++
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP 48 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP 48 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence 37899999995 88899999999999999999886
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0066 Score=51.97 Aligned_cols=32 Identities=34% Similarity=0.406 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48999999999999999999999999999765
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.80 E-value=0.0072 Score=46.49 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.|++.|||+|.+|.-+|..|++.|.+|+++.|.+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999999999999999999999999999875
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.014 Score=45.72 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=32.8
Q ss_pred CCcccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|.-++|+|+|| |..|..++.+|.++|++|+++.|+.
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 66688999997 9999999999999999999999864
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.72 E-value=0.012 Score=44.33 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|.+||-|..|...|.+|.++|++|.++|++.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence 459999999999999999999999999999875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.65 E-value=0.017 Score=43.67 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.++|+|||+|-++.++++.|.+.|. +++|+.|+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 3689999999999999999999997 799998874
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=94.61 E-value=0.016 Score=42.41 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
.+|.|||+|..|.++|+.|..+++ +++|+|.+.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 479999999999999999999987 799999764
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.48 E-value=0.013 Score=45.65 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|||.|+.|+.+|..++ +|++|+.+|-+.
T Consensus 2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~ 32 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP 32 (196)
T ss_dssp EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence 4999999999999998776 599999999775
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.47 E-value=0.018 Score=43.66 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
++|.|||.|..|.+.|..|.+.|+ +|..+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 469999999999999999999986 577788764
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.46 E-value=0.016 Score=44.85 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=29.4
Q ss_pred cEEEE-CCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIV-GAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvII-GaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|+|| |+|..|.+.|..|++.|.+|++.+|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999 669999999999999999999999875
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=94.39 E-value=0.013 Score=48.51 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhh-CCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSS-CGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~-~g~~v~~i~r~~ 202 (381)
...+|+|||+|++|+.+|..|++ .|.+|+++.+++
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~ 67 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 67 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence 34679999999999999999987 599999999987
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.012 Score=44.23 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=31.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
+|+|+|+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 689999999999999999999999999999884
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.35 E-value=0.017 Score=42.35 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+|.|||+|..|.++|+.|+.++. ++.|+|.+.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 59999999999999999998876 699999764
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.25 E-value=0.031 Score=42.55 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+..|-|||-|..|...|.+|.++|++|.++|++.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 3679999999999999999999999999999875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.24 E-value=0.021 Score=43.15 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
-+|+|+|+|+.|+.++..++..|.+|+++|+++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 469999999999999999988999999999875
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.036 Score=40.99 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
-.++|+|.|..|..++..|.++|.+++++|.++
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 459999999999999999999999999999875
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.13 E-value=0.02 Score=41.82 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+|.|||+|..|.++|+.|..++. ++.|+|.+.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 59999999999999999998876 799998764
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.13 E-value=0.028 Score=42.01 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
+.++|+|||+|-.|..++..|...|. +++|+.|..
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~ 58 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 58 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence 34789999999999999999999998 588888764
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.11 E-value=0.023 Score=41.73 Aligned_cols=32 Identities=34% Similarity=0.497 Sum_probs=28.6
Q ss_pred cEEEECC-CHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 5 PVVIVGA-GPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 5 ~vvIIGa-G~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+|.|||| |..|.++|+.|..++. ++.|+|...
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 4999996 9999999999999986 899999764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.025 Score=42.87 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 469999999999999999999998 689999875
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=94.01 E-value=0.019 Score=43.00 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|-|||-|..|...|..|++.|++|+++|+++
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 49999999999999999999999999999875
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.98 E-value=0.029 Score=41.42 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|.|||+|..|.++|+.|...+. ++.|+|.+.
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~ 37 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 579999999999999998888876 799999764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.023 Score=42.91 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
..|+|+|+|+.|+.++..++..|.+|+++|.++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 469999999999999988888899999999875
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.90 E-value=0.023 Score=41.61 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=28.1
Q ss_pred cEEEECC-CHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 5 PVVIVGA-GPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 5 ~vvIIGa-G~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
+|+|||| |..|.++|+.|...+. +++|+|.+.
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~ 36 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence 6899996 9999999999999887 699998653
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.022 Score=44.14 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-++|.|||+|.+|..+|..++..|.+|+++.+.+
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 4799999999999999999999999999999876
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.67 E-value=0.032 Score=41.94 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|+|+|+.|+.++..+...|.+|+++|+++
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 469999999999999998888899999999875
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=93.63 E-value=0.041 Score=41.87 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|-|||-|..|...|.+|.++|++|.++|++.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 359999999999999999999999999999875
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.041 Score=42.07 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
++|+|||+|-+|.++++.|.+.|. +++|++++.
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 52 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence 689999999999999999999988 688998875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=93.30 E-value=0.03 Score=42.39 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|+|+|-++.++++.|.+.+.+++|+.|+.
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 689999999999999999998888999999875
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.27 E-value=0.04 Score=45.49 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.3
Q ss_pred CcccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++++|+|+|| |..|-.++..|.+.|.+|++++++.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4688999998 9999999999999999999999875
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.17 E-value=0.035 Score=41.03 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+|.|||.|..|...|..|+++|++++++++..
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence 49999999999999999999999999888654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.10 E-value=0.022 Score=43.88 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
-+++.|||+|.+|..+|..++..|.+|+++.+.+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4789999999999999999999999999999876
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.04 E-value=0.041 Score=42.06 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CEEEEECCCccchhheeccccccccccccccccc
Confidence 569999999999999999999997 689999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.85 E-value=0.058 Score=40.86 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence 479999999999999999998897 789998764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.71 E-value=0.043 Score=41.72 Aligned_cols=33 Identities=33% Similarity=0.299 Sum_probs=28.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||+|-++.++++.|.+.| +++|+.|+.
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence 378999999999999999998776 899998874
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.051 Score=40.83 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|+|+|+.|+.++..+...|.++++++.+.
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence 469999999999999998888999998998764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.66 E-value=0.03 Score=40.36 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
|+++|+|.|..|..+|..|.+.|.+|+++...+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 678999999999999999999999999998766
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.45 E-value=0.045 Score=44.16 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|+|||+|--|..+|..|++.|. +++|+|...
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 689999999999999999999999 799999764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=92.43 E-value=0.061 Score=44.55 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=31.3
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.+|+|+|| |..|...+.+|.++|++|+++.|+.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 37 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 37 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 467999998 9999999999999999999998865
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.20 E-value=0.036 Score=47.09 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=29.8
Q ss_pred CeEEEEcCCCCHHHHHHHHh-----hCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLS-----SCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~-----~~g~~v~~i~r~~ 202 (381)
-.|+|||+|++|+-+|..|+ +.|.+|+++.|++
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~ 45 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 45 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence 46999999999999999997 4688999999987
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=91.91 E-value=0.049 Score=46.69 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|..|+-+|..|++.|.+|.++++..
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 58999999999999999999999999999964
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=91.87 E-value=0.046 Score=46.95 Aligned_cols=32 Identities=38% Similarity=0.505 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|..|+-+|..|++.|.+|.++++..
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 40 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR 40 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999999999999864
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.85 E-value=0.092 Score=40.32 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=31.4
Q ss_pred CcccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++++|.|| |-.|..+|..|+++|.+|++++++.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 3478999995 8899999999999999999999885
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=91.83 E-value=0.045 Score=46.85 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|..|+-+|..|++.|.+|.++++.+
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~ 37 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE 37 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence 68999999999999999999999999999865
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.69 E-value=0.011 Score=47.56 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCee
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACT 195 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v 195 (381)
+|+|||+|.+|+-+|..|++.|.+|
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred EEEEECchHHHHHHHHHHHHCCCCc
Confidence 6999999999999999999998643
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=91.67 E-value=0.08 Score=38.44 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.3
Q ss_pred cEEEEC-CCHHHHHHHHHHHhCCC--CeEEEecC
Q 035902 5 PVVIVG-AGPAGLATSACLNNLSV--PNIILERE 35 (381)
Q Consensus 5 ~vvIIG-aG~aG~~~A~~l~~~g~--~v~lie~~ 35 (381)
+|.||| +|..|.++|+.|..++. ++.|+|..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~ 35 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP 35 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence 699999 69999999999999987 68898853
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.64 E-value=0.054 Score=38.86 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|+|+|+|..|..++..|.+.|.+|+++.+.+
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 68999999999999999999999999998766
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.52 E-value=0.079 Score=40.06 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=27.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~~ 36 (381)
-.|+|+|+|+.|+.++..+...|.+ |++.|.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence 4699999999999999999999985 66667654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.47 E-value=0.094 Score=44.72 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=30.8
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|.|| |+.|..++..|.++|++|+++|+..
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 378999997 9999999999999999999998654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.42 E-value=0.092 Score=40.50 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=28.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
-+|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~ 60 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 60 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence 479999999999999999888877 678888764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.043 Score=45.97 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhC--CCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSC--GACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~--g~~v~~i~r~~ 202 (381)
...+++|||+|+.|+.+|..|+++ |.+|+++.+.+
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 85 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 85 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 456799999999999999999965 88999999987
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.15 E-value=0.078 Score=39.65 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
..|+|+|+|+.|+.++..+...|.+|++++.++
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~ 61 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD 61 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence 468999999999999999998899999998764
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=91.11 E-value=0.1 Score=40.79 Aligned_cols=35 Identities=37% Similarity=0.544 Sum_probs=30.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 2 EEVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
++.++++.|+|.||+..|..+.+.+. ++.++|+..
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G 60 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG 60 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence 45789999999999999999998877 688888864
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=91.04 E-value=0.042 Score=42.28 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++|+|+|+|..|.-+|..|++.|.+|+++.|++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 579999999999999999999999999998765
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.04 E-value=0.06 Score=34.43 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
|+|.|+|||..|--++....++|.++.++...+
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 689999999999999999999999999888655
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.04 E-value=0.12 Score=35.67 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...++.|+|||..|.-++....++|.++.++.+.+
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~ 44 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA 44 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45689999999999999999999999999998776
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.12 Score=43.75 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.7
Q ss_pred CCcccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+ ++|+|.|| |+.|...+..|.++|.+|+.+|+..
T Consensus 1 M~-kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~ 36 (346)
T d1ek6a_ 1 MA-EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH 36 (346)
T ss_dssp CC-SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CC-CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 74 78999998 9999999999999999999999643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.91 E-value=0.099 Score=39.56 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..|+|+|+|+.|+.++..++..|. +|+.+|.++
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence 359999999999999999999995 799999875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.73 E-value=0.1 Score=38.36 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++.|||+|-.|.+.|..|.+.+.++++.+++.
T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence 49999999999999999999999999998764
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=90.54 E-value=0.11 Score=38.24 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEecCC
Q 035902 5 PVVIVGAGPAGLATSACLNNLS-VPNIILERED 36 (381)
Q Consensus 5 ~vvIIGaG~aG~~~A~~l~~~g-~~v~lie~~~ 36 (381)
+|.+||+|..|.+.|..|.+.| .++.+++++.
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 5999999999999999998887 7899998875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.47 E-value=0.12 Score=38.33 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+-+++|+|+|..|.+.+.....+|.+|+++..+.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 368899999999999999999999999999999776
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.26 E-value=0.053 Score=38.59 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=27.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhC-CCC-eEEEecCCCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL-SVP-NIILEREDCS 38 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~-g~~-v~lie~~~~~ 38 (381)
+++|+|+|||-+|.+.+.++... +++ +.+||.++..
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 47899999999999998877543 555 5778876644
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.08 E-value=0.096 Score=42.66 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.8
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|++|+|.|| |..|-.++..|.++|++|+.++++.
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 356999998 9999999999999999999998865
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.13 Score=38.57 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+++++|+|+|-+|--++..|.+.|.+|+++.|..
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 4468999999999999999999999999988887765
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=90.01 E-value=0.36 Score=31.59 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=28.1
Q ss_pred CeEEEEcCCCCHHH-HHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGME-IAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e-~a~~l~~~g~~v~~i~r~~ 202 (381)
.|+-+||-|=+||. +|..|.+.|.+|+--.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~ 35 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE 35 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 47889999999986 7999999999998887654
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.87 E-value=0.12 Score=40.78 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|||+|.+|+-+|..+++.+.+++++-+..
T Consensus 32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 3889999999999999999999999888887664
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.81 E-value=0.15 Score=37.15 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=25.1
Q ss_pred cEEEEC-CCHHHHHHHHHHHhC-C--CCeEEEecC
Q 035902 5 PVVIVG-AGPAGLATSACLNNL-S--VPNIILERE 35 (381)
Q Consensus 5 ~vvIIG-aG~aG~~~A~~l~~~-g--~~v~lie~~ 35 (381)
+|.||| +|..|.++|+.|..+ + .++.++|..
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~ 36 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 599999 599999999988643 4 479999864
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.77 E-value=0.088 Score=40.04 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=29.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|.|||+|..|.-+|..|++.|.+|+++.|..
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~ 33 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEF 33 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 58999999999999999999999999998753
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.43 E-value=0.15 Score=37.77 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|||=|..|..+|..++..|.+|+++|..+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 789999999999999999999999999999864
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.42 E-value=0.18 Score=38.58 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=33.8
Q ss_pred CCCCCCeEEEEc-CCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 165 GKFIGKNVLVVG-CGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 165 ~~~~~~~v~viG-~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++.+|+++|.| +|-+|.++|..|++.|.+|+++.|+.
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 355799999999 58899999999999999999999876
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=89.40 E-value=0.22 Score=42.04 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=31.8
Q ss_pred CcccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+++.|+|+|| |..|..++..|.++|++|+++-|+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence 3688999998 9999999999999999999998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.26 E-value=0.14 Score=38.67 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=28.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence 459999999999999999999987 577777654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.02 E-value=0.16 Score=38.28 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++-+++|+|+|..|..++.....+|..|+++..+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 57899999999999999999999999999999877
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.99 E-value=0.21 Score=37.54 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeE-EEecC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNI-ILERE 35 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~-lie~~ 35 (381)
.+|+|+|+|+.|+.++..+...|.+++ +.|.+
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~ 62 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV 62 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence 469999999999999999988888665 45554
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.15 Score=40.37 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCcccEEEECC-CHHHHHHHHHHHhCCC--CeEEEecCC
Q 035902 1 MEEVPVVIVGA-GPAGLATSACLNNLSV--PNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGa-G~aG~~~A~~l~~~g~--~v~lie~~~ 36 (381)
|+.++|+|.|| |..|...+.+|.++|. +|+++.|+.
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~ 50 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK 50 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence 56688999999 9999999999999885 799999865
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.72 E-value=0.38 Score=31.99 Aligned_cols=35 Identities=23% Similarity=0.092 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCCHHHH-HHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEI-AYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~-a~~l~~~g~~v~~i~r~~ 202 (381)
..+++.+||-|-+|+.. |..|.+.|.+|+-..+..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 57899999999999885 999999999999887654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.18 Score=42.43 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=28.8
Q ss_pred cEEEECC-CHHHHHHHHHHHhCCCCeEEEecC
Q 035902 5 PVVIVGA-GPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 5 ~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
+|+|+|| |+.|..++..|.++|.+|+++|+-
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~ 33 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL 33 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 3999999 999999999999999999999864
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.62 E-value=0.12 Score=39.39 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=29.0
Q ss_pred eEEEE-cCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVV-GCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~vi-G~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|.|+ |+|..|..+|..|++.|.+|++..|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58899 669999999999999999999998875
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=88.61 E-value=0.21 Score=42.11 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=31.2
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|+|.|| |+.|..++..|.++|++|..+++..
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 378999996 8999999999999999999999865
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=88.49 E-value=0.14 Score=37.54 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCCeEEEEc-CCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVG-CGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG-~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.-++|.||| .|.+|..+|..|.+.|.+|+++.|..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 458999999 69999999999999999999998876
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=88.42 E-value=0.22 Score=40.64 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 168 IGKNVLVVGC-GNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 168 ~~~~v~viG~-G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
+.++|+|+|+ |.+|-.++..|.+.|.+|+.+.|.+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence 3589999996 99999999999999999999999873
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.21 Score=41.50 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=30.0
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
+++|+|.|| |+.|...+.+|.++|.+|+.+|+.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 378999999 999999999999999999999863
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.11 E-value=0.2 Score=43.67 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|+|||+|--|..+|..|+..|. +++|+|...
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999999 899999865
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.11 E-value=0.2 Score=33.49 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHH-HHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLAT-SACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~-A~~l~~~g~~v~lie~~~ 36 (381)
+++-+||-|=+|+++ |..|.++|++|+--|...
T Consensus 9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 789999999999998 888999999999998764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.97 E-value=0.22 Score=37.36 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=27.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..|+|+|+|+.|+.++..++..+. +|+.+|.++
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~ 63 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP 63 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence 358999999999999999999877 577777654
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=87.89 E-value=0.14 Score=43.62 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|..|+-+|..|++.|.+|.++++.+
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 57999999999999999999999999999884
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.83 E-value=0.17 Score=37.68 Aligned_cols=32 Identities=34% Similarity=0.316 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|.|||.|.+|..+|..|.+.|.+|+.+.|++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 68999999999999999999999999887764
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=87.67 E-value=0.16 Score=37.39 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCc-ccEEEECC-CHHHHHHHHHHHhCCC
Q 035902 1 MEE-VPVVIVGA-GPAGLATSACLNNLSV 27 (381)
Q Consensus 1 M~~-~~vvIIGa-G~aG~~~A~~l~~~g~ 27 (381)
|++ .+|.|||| |..|.++|+.|...+.
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l 29 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEM 29 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccc
Confidence 765 59999997 9999999999997643
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=87.65 E-value=0.19 Score=37.00 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|=|..|..+|.+++..|.+|++.|.++
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 789999999999999999999999999999875
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.56 E-value=0.45 Score=35.88 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...++++.|||.|.+|-++|..+...|.+|..+.|.+
T Consensus 39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccCceEEEeccccccccceeeeeccccccccccccc
Confidence 3568999999999999999999999999999988765
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=87.46 E-value=0.27 Score=40.31 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCeEEEEcC-CCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGC-GNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~-G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|+|+|+ |.+|..++..|.+.|.+|+.+.|.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 37 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 37 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 467999996 9999999999999999999999976
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=87.09 E-value=0.22 Score=36.78 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~ 202 (381)
....++++|||.|.+|..++..|...|. ++++..|..
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~ 58 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 58 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence 3468999999999999999999999996 577777654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.74 E-value=0.3 Score=40.42 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=30.5
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++|+|.|| |+.|..++..|.++|++|..+++..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 57999999 9999999999999999999999865
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=86.73 E-value=0.29 Score=36.60 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=27.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..|+|+|+|+.|+.++..++..|. .++++|.++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~ 67 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE 67 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence 469999999999999999988886 556677664
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=86.65 E-value=0.35 Score=35.98 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~ 202 (381)
.+++++|+|+|-+|--++..|.+.|. +|+++.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 46899999999999999999999995 688877764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=0.24 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=31.8
Q ss_pred CCeEEEEc-CCCCHHHHHHHHhhCCCeeEEEEecCc
Q 035902 169 GKNVLVVG-CGNSGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 169 ~~~v~viG-~G~~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
.++|+|+| +|.+|-.++..|.+.|.+|+++.|++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~ 38 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS 38 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence 58899999 599999999999999999999999873
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.43 E-value=0.29 Score=38.39 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=26.8
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCCCeEEEe
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSVPNIILE 33 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie 33 (381)
++|+|.|| |..|..++..|.++|.++++++
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~ 34 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKG 34 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence 67999996 9999999999999998877765
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.30 E-value=0.39 Score=35.47 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++|.|||-|.+|..+|..|.+.|.+|+++.|.+
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence 579999999999999999999999999887765
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.13 E-value=0.33 Score=36.36 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=28.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..|+|+|+|..|+.++..++..|. +|++++.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~ 63 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK 63 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence 359999999999999999999986 677777664
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.11 E-value=0.35 Score=37.21 Aligned_cols=32 Identities=25% Similarity=0.135 Sum_probs=28.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|.|||.|..|.-+|..+++.|.+|+.+....
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 58999999999999999999999999887544
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=85.87 E-value=0.32 Score=39.20 Aligned_cols=36 Identities=3% Similarity=0.123 Sum_probs=29.6
Q ss_pred CCcccEEEECC-CH--HHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGA-GP--AGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGa-G~--aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+.+.++|.|| |- .|.++|..|+++|.+|++.+++.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 45578899985 44 78899999999999999998764
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.77 E-value=0.15 Score=45.84 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
..+|+|||+|..|..+|..|...|. +++|+|...
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~ 59 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ 59 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 4689999999999999999999998 799999764
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.53 E-value=0.31 Score=40.91 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=30.1
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
.+.++|.|| |..|..++.+|.++|.+|+.+|+.
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~ 49 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF 49 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 368999998 999999999999999999999964
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.44 E-value=0.28 Score=34.68 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=26.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|+|.|..|..++..|. +..++++|.++
T Consensus 1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~ 31 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR--GSEVFVLAEDE 31 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC--GGGEEEEESCT
T ss_pred CEEEEECCCHHHHHHHHHHc--CCCCEEEEcch
Confidence 46999999999999999985 45688888765
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=85.32 E-value=0.39 Score=38.85 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=30.0
Q ss_pred CcccEEEECC-C--HHHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGA-G--PAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGa-G--~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.+.++|.|| | -.|.++|..|+++|.+|++.+++.
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~ 41 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 41 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4578899996 3 389999999999999999999875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.31 E-value=0.33 Score=36.11 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++++++|+|+|.+|.-.+..+...|.+|+.+.+++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 68999999999999988888888899999998877
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.30 E-value=0.47 Score=35.74 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.++|.|||.|..|...|..+...|.+|..+|+..
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CceEEEeccccccccceeeeeccccccccccccc
Confidence 3679999999999999999999999999999865
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=85.09 E-value=0.32 Score=36.40 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
...+++++|+|+|-+|--++..|.+.+.+|+++.|..
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 4568999999999999888888888888899998875
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=85.05 E-value=0.29 Score=42.11 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=29.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~ 202 (381)
.++|||+|.+|+-+|..|++.+ .+|-++++.+
T Consensus 26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 5899999999999999999998 4899999886
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=85.02 E-value=0.58 Score=32.33 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCC-----------CHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGN-----------SGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~-----------~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..++++|+|+|+ ++++++..|.+.|.++.++...|
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP 48 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP 48 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence 468999999997 56778899999999999887776
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.77 E-value=0.36 Score=35.55 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+.+|.++|+|-|.+|-.+|..+...|.+|++....|
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 4579999999999999999999999999999998765
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=84.66 E-value=0.39 Score=35.42 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=29.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|.|||-|.+|..+|..|.+.|.+|+.+.|.+
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 58999999999999999999999999887765
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.44 E-value=0.46 Score=36.99 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=27.9
Q ss_pred ccEEEECCCHHHHHHHHHHH--------------------hCCC-CeEEEecCC
Q 035902 4 VPVVIVGAGPAGLATSACLN--------------------NLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~--------------------~~g~-~v~lie~~~ 36 (381)
++|+|||+|-.++=||..|+ +.|. +|+++-|..
T Consensus 40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg 93 (216)
T d1lqta1 40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 93 (216)
T ss_dssp SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence 68999999999999999887 4566 689998765
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.19 E-value=0.41 Score=41.02 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=28.2
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCCCeEEEe
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSVPNIILE 33 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie 33 (381)
++|+|.|| |..|..++..|.+.|++|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 46999998 9999999999999999999998
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=84.14 E-value=0.37 Score=37.05 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=33.8
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+..++++.|||.|.+|-++|..+...|.+|..+.+..
T Consensus 41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 78 (199)
T d1dxya1 41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP 78 (199)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence 35578999999999999999999999999998887755
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.79 E-value=0.56 Score=34.75 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
.++|+|||=|.-|.+=|..|+..|.+|+|==+.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~ 48 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS 48 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence 378999999999999999999999999886554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=83.78 E-value=0.38 Score=35.72 Aligned_cols=35 Identities=31% Similarity=0.561 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+++++|+|+|.+|.-++..+...|.+|+.+.+.+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 57899999999999999999999999999888766
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.53 E-value=0.49 Score=39.38 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=30.2
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.++|.|| |+.|..++..|.++|++|+.+++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 56888898 9999999999999999999999864
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.41 E-value=0.41 Score=35.91 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 167 FIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++++|+|+|-+|--++..|.+.+ +|+++.|..
T Consensus 16 ~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 16 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred cCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence 46899999999999888888887766 888887765
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.27 E-value=0.51 Score=34.98 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=27.7
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCC-CeEEEecCC
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSV-PNIILERED 36 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~-~v~lie~~~ 36 (381)
.+|+|+|+ |+.|+.++..+...|. +|++++.++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~ 63 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE 63 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccch
Confidence 46999995 9999999999888885 788888764
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=83.24 E-value=0.53 Score=35.86 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+..++++.|||-|.+|-++|..+...|.+|....+..
T Consensus 45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 82 (193)
T d1mx3a1 45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL 82 (193)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred eeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence 44578999999999999999999999999998877654
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.22 E-value=0.9 Score=31.69 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCC-----------CHHHHHHHHhhCCCeeEEEEecCc
Q 035902 168 IGKNVLVVGCGN-----------SGMEIAYDLSSCGACTSIVVRGPV 203 (381)
Q Consensus 168 ~~~~v~viG~G~-----------~~~e~a~~l~~~g~~v~~i~r~~~ 203 (381)
..++++|+|+|+ ++++++..|.+.|.++.++...|.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 568999999998 567888999999999988877773
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=83.12 E-value=2 Score=30.54 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=30.9
Q ss_pred hhhhhcCCCeEEccC----cceEeCC--eEEEcCCcEeeccEEEEec
Q 035902 270 AMDKIRKGEIQVFPS----ITSINRN--EVEFENGKIEEFEAIIFAT 310 (381)
Q Consensus 270 ~~~~~~~~~v~~~~~----v~~v~~~--~v~~~~g~~~~~D~vi~a~ 310 (381)
+.+.+++.+|+++.+ +.+++.. .+.+.+|+++++|++.+.+
T Consensus 94 ~~~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vvP 140 (141)
T d1fcda2 94 YGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIP 140 (141)
T ss_dssp HCSTTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEECC
T ss_pred HHHHHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeCC
Confidence 355567788999876 5566643 6788899999999998753
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=83.06 E-value=0.5 Score=36.18 Aligned_cols=38 Identities=21% Similarity=0.069 Sum_probs=32.9
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+..++++.|||-|.+|-++|..+...|.+|..+.+..
T Consensus 39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~ 76 (197)
T d1j4aa1 39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR 76 (197)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence 34578999999999999999999999999998776543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=82.99 E-value=0.59 Score=35.85 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
++|+|-|-|-.|..+|..|.+.|.+|++.|.+
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d 59 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTD 59 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence 78999999999999999999999999988764
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=82.94 E-value=0.41 Score=40.26 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=32.2
Q ss_pred CCCeEEEEc-CCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVG-CGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG-~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+|+|+|.| +|.+|..++..|.+.|.+|..+.|..
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 579999998 58999999999999999999999876
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=82.93 E-value=0.37 Score=34.90 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCC--CeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCG--ACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g--~~v~~i~r~~ 202 (381)
..++.|||+|.+|..+|..|+..+ .++.++.+..
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 568999999999999999999876 5799888654
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=82.90 E-value=0.44 Score=40.21 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=28.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.++|||+|..|+-+|..|++. .+|-++++.+
T Consensus 28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 789999999999999999986 8899999886
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.76 E-value=0.29 Score=35.93 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.7
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLS 26 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g 26 (381)
..+|+|||| |..|.++|+.|...+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~ 27 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGS 27 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHH
Confidence 468999996 999999999998653
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.34 E-value=0.66 Score=38.73 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=29.6
Q ss_pred ccE-EEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPV-VIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~v-vIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
++| +|.|| |..|..++.+|.++|++|+.+++..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 468 78898 8999999999999999999999864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=82.26 E-value=0.59 Score=33.95 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 169 GKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 169 ~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..+++|+|.|..|..++..|.+.|.+|+++...+
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 3579999999999999999999999999998765
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=82.23 E-value=0.81 Score=34.36 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecC
Q 035902 166 KFIGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGP 202 (381)
Q Consensus 166 ~~~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~ 202 (381)
+..+++++|+|+|-+|--++..|.+.|. +++++.|.+
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 52 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence 4568999999999999888999998886 688888876
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.18 E-value=0.71 Score=34.33 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.2
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|+|| |+.|+.+...+...|.+|+.++.++
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~ 63 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTE 63 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CEEEEEeccccccccccccccccCcccccccccc
Confidence 46999996 9999999998888899998888654
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=82.07 E-value=0.4 Score=39.24 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=28.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CC-------CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SV-------PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~-------~v~lie~~~ 36 (381)
+.+++|.|+|.||+..|..|... |. ++.++|+..
T Consensus 25 d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~G 69 (308)
T d1o0sa1 25 QEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDG 69 (308)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTE
T ss_pred HcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCC
Confidence 46899999999999999887653 32 699999875
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=82.05 E-value=0.78 Score=36.07 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCcccEEEECCC-HHHHHHHHHHHhCCCCeEEEecCC
Q 035902 1 MEEVPVVIVGAG-PAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 1 M~~~~vvIIGaG-~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
|+.+.++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~ 38 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 38 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 456789999984 489999999999999999999874
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=81.96 E-value=0.68 Score=36.95 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=28.4
Q ss_pred cccEEEECCC---HHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAG---PAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG---~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+.++|.||+ =.|.++|..|+++|.+|++.++++
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 3678888864 279999999999999999988764
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.80 E-value=0.76 Score=36.17 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=29.6
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
-+.|+|.|| |-.|.++|..|+++|.+|.++|+..
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~ 36 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE 36 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367999999 4589999999999999999998765
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=81.70 E-value=0.45 Score=40.70 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhCC-CeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCG-ACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g-~~v~~i~r~~ 202 (381)
.++|||+|..|+=+|..|++.+ .+|-++++.+
T Consensus 19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~ 51 (385)
T d1cf3a1 19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGS 51 (385)
T ss_dssp EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 6899999999999999999987 5899999886
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=81.52 E-value=0.56 Score=39.29 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=25.9
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCCCe--EEEec
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSVPN--IILER 34 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~~v--~lie~ 34 (381)
++|+|.|| |..|...+..|.++|.+| +.+|.
T Consensus 3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~ 36 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK 36 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence 66999996 999999999999998865 44553
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.36 E-value=0.54 Score=34.69 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
++++++|+|+|.+|.-++..+...|.+|..+.+++
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 58899999999999999998888999998888765
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=81.31 E-value=0.55 Score=38.65 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=30.0
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+++|+|.|| |.-|-.++.+|.++|..+++++...
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~ 36 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD 36 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence 578999999 9999999999999999888876543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=81.17 E-value=0.92 Score=36.16 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCC-CHHHHHHHHhhCCCeeEEEEecC
Q 035902 167 FIGKNVLVVGCGN-SGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 167 ~~~~~v~viG~G~-~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+.+|.++|.|++. +|.++|..|++.|.+|.++.|++
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~ 39 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV 39 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 5688888888765 79999999999999999998887
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=81.12 E-value=0.41 Score=34.83 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=29.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 171 NVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 171 ~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
+|.|||.|..|.-+|..|.+.|.+|++..+++
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence 68999999999999999999999988887665
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=81.11 E-value=0.63 Score=37.11 Aligned_cols=35 Identities=6% Similarity=0.147 Sum_probs=28.9
Q ss_pred CcccEEEECCCH---HHHHHHHHHHhCCCCeEEEecCC
Q 035902 2 EEVPVVIVGAGP---AGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 2 ~~~~vvIIGaG~---aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.+.++|.||+- -|.++|..|+++|.+|++.++++
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~ 41 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 41 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence 346788888754 57889999999999999999875
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.92 E-value=0.73 Score=36.22 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=29.1
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+|+|.|| |-.|.++|..|+++|.+|++++++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~ 36 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA 36 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 57999998 4589999999999999999999875
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.88 E-value=0.79 Score=36.28 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=28.7
Q ss_pred cccEEEECCC-HHHHHHHHHHHhCCCCeEEEecCC
Q 035902 3 EVPVVIVGAG-PAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG-~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
.+.++|-||+ -.|.++|..|+++|.+|++.+++.
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3667778874 489999999999999999999874
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=80.83 E-value=0.57 Score=39.30 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=31.6
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 168 IGKNVLVVGC-GNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~-G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..|.|+|+|+ |.+|..++..|.+.|.+|+.+.|++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence 3688999995 9999999999999999999999975
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=80.65 E-value=0.68 Score=39.03 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=28.2
Q ss_pred ccEEEECC-CHHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGA-GPAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+.|+|.|| |..|..++.+|.+.|.+|+.+++..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 45779995 9999999999999999999999854
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.61 E-value=1.7 Score=31.09 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=29.8
Q ss_pred cccEEEECC-CHHHHHHHHHHHhCC---CCeEEEecCCCCCC
Q 035902 3 EVPVVIVGA-GPAGLATSACLNNLS---VPNIILEREDCSAS 40 (381)
Q Consensus 3 ~~~vvIIGa-G~aG~~~A~~l~~~g---~~v~lie~~~~~g~ 40 (381)
+.+|.|||| |+.|.....-|.+++ .++..+-.+...|.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk 43 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ 43 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc
Confidence 467999999 999999999997654 37877766665554
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.61 E-value=0.37 Score=39.25 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=27.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CC-------CeEEEecCC
Q 035902 3 EVPVVIVGAGPAGLATSACLNNL----SV-------PNIILERED 36 (381)
Q Consensus 3 ~~~vvIIGaG~aG~~~A~~l~~~----g~-------~v~lie~~~ 36 (381)
+.+|+|.|+|.||+.+|..|... |. ++.++|+..
T Consensus 25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G 69 (294)
T d1pj3a1 25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG 69 (294)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence 46899999999999999887543 43 699999875
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=80.49 E-value=0.48 Score=35.48 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 170 KNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 170 ~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
..|.|||-|.+|..+|..|.+.|.+|+.+.|.+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998877
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=80.44 E-value=0.56 Score=35.25 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhCCC-eeEEEEecC
Q 035902 168 IGKNVLVVGCGNSGMEIAYDLSSCGA-CTSIVVRGP 202 (381)
Q Consensus 168 ~~~~v~viG~G~~~~e~a~~l~~~g~-~v~~i~r~~ 202 (381)
.+++++|+|+|.+|.-++..+...|. +|+.+.+++
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCCEEEEECCCccchhheeccccccccccccccccc
Confidence 58999999999999998888888997 688888766
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.30 E-value=0.95 Score=33.55 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=25.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecC
Q 035902 4 VPVVIVGAGPAGLATSACLNNLSVP-NIILERE 35 (381)
Q Consensus 4 ~~vvIIGaG~aG~~~A~~l~~~g~~-v~lie~~ 35 (381)
-.|+|+|+|..|+.++..++..|.+ |+.++.+
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~ 62 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN 62 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence 4589999999999999999999975 4555444
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=80.21 E-value=0.55 Score=33.70 Aligned_cols=48 Identities=10% Similarity=-0.030 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCcccccc--EEEEEEEeCCCCeEEEEEeecCCCceEEEEeCEEEEc
Q 035902 79 FINYVDNYVSQMGINPRYHR--SVESASYDENAKAWIIVAKNTALDAYEEYVARYLVVA 135 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~d~vIlA 135 (381)
+.+.+...+++.+++++.+. .+.+++... +. +.+.+| +++.||.+++-
T Consensus 90 ~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~--~~--~~~~~G-----e~v~yD~l~vv 139 (141)
T d1fcda2 90 WERLYGFGTENAMIEWHPGPDSAVVKVDGGE--MM--VETAFG-----DEFKADVINLI 139 (141)
T ss_dssp HHHHHCSTTSSCSEEEECSSTTCEEEEEETT--TE--EEETTC-----CEEECSEEEEC
T ss_pred HHHHHHHHHHhcCceeeecCCceEEeecCCc--EE--EEeCCC-----cEEeeeEEEeC
Confidence 33444444555677776554 566666543 44 677776 68999999873
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.18 E-value=0.78 Score=36.68 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=28.0
Q ss_pred ccEEEECCC-HHHHHHHHHHHhCCCCeEEEecCC
Q 035902 4 VPVVIVGAG-PAGLATSACLNNLSVPNIILERED 36 (381)
Q Consensus 4 ~~vvIIGaG-~aG~~~A~~l~~~g~~v~lie~~~ 36 (381)
+-++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~ 44 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTV 44 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 558888884 478899999999999999999864
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=80.12 E-value=0.92 Score=34.28 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhCCCeeEEEEecC
Q 035902 165 GKFIGKNVLVVGCGNSGMEIAYDLSSCGACTSIVVRGP 202 (381)
Q Consensus 165 ~~~~~~~v~viG~G~~~~e~a~~l~~~g~~v~~i~r~~ 202 (381)
.+..++++.|+|.|.+|.++|..+...|.+|....|..
T Consensus 40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred eeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence 34578999999999999999999999999999888754
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=80.11 E-value=0.74 Score=38.07 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=28.3
Q ss_pred cEEEECC-CHHHHHHHHHHHhCCCCeEEEecC
Q 035902 5 PVVIVGA-GPAGLATSACLNNLSVPNIILERE 35 (381)
Q Consensus 5 ~vvIIGa-G~aG~~~A~~l~~~g~~v~lie~~ 35 (381)
+|+|.|| |+.|..++..|.++|++|+.+|+-
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~ 33 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL 33 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence 5899988 999999999999999999999853
|