Citrus Sinensis ID: 035914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MVPKQSNTGLFVGLSKGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK
Secondary Structure (PSIPRED)
ccccccccccEEEEccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mvpkqsntglfvglskgktskgvdfeRNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTratggeektk
Flexible Loop (DISEMBL)
mvpkqsntglfvglskgktskgvdferNVIREvagfasykkginkllkvgkdkrtlkvakkklgahkrakmkreemsnvlrwtratggeektk
Low Complexity Region (SEG)
MVPKQSNTGLFVGLSKGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK
Disordered region (IsUnstruct)
**********FVGL******KGVDFERNVIREVAGFASYKKGINKLLKVGKD*****************************************
Disordered Region (DISOPRED)
************GLSKGKTSKGVDFERNVIREVAGFASYKKGINKLL*********KVAKKKLGAHKRA************************
Disordered Region (DISEMBL)
MVPKQSNTGLFVGLSKGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKK************EEMSNVLRWTRATGGEEKTK
Disordered Region (DISPRO)
*****SNTGLFVGLSKGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRAT*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPKQSNTGLFVGLSKGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q9M352	112	60S ribosomal protein L36	yes	no	0.946	0.785	0.580	1e-21
O80929	113	60S ribosomal protein L36	no	no	0.946	0.778	0.571	3e-21
Q9LZ57	108	60S ribosomal protein L36	no	no	0.870	0.75	0.591	3e-20
P52866	106	60S ribosomal protein L36	N/A	no	0.827	0.726	0.510	2e-15
Q6DER2	105	60S ribosomal protein L36	yes	no	0.698	0.619	0.569	2e-13
Q66KU4	105	60S ribosomal protein L36	N/A	no	0.698	0.619	0.569	2e-13
Q98TF6	105	60S ribosomal protein L36	yes	no	0.698	0.619	0.569	2e-13
Q8UW19	105	60S ribosomal protein L36	N/A	no	0.698	0.619	0.569	2e-13
Q90YT2	105	60S ribosomal protein L36	N/A	no	0.763	0.676	0.512	3e-13
Q5RAZ9	105	60S ribosomal protein L36	yes	no	0.698	0.619	0.569	3e-13

>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 69/105 (65%), Gaps = 17/105 (16%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M   Q  TGLFVGL+KG                 KTSK   F RN+I+EVAG A Y+K I
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGG 88
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMS+VLR  R+ GG
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGG 105

Arabidopsis thaliana (taxid: 3702)

>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 67/105 (63%), Gaps = 17/105 (16%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M      TGLFVGL+KG                 KTSK   F R +IREVAG A Y+K I
Sbjct: 1   MTTPAVKTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGG 88
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMS+VLR  R+ GG
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGG 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 66/98 (67%), Gaps = 17/98 (17%)

Query: 8   TGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGINKLLKVG 50
           TGLFVGL+KG                 KTSK   F RN+I+EVAG A Y+K I +LLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 51  KDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGG 88
           KDKR LKVAK+KLG HKRAK KREEMS+VLR  R+ G 
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGA 101

Arabidopsis thaliana (taxid: 3702)

>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 59/96 (61%), Gaps = 19/96 (19%)

Query: 1  MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
          M PKQ NTGLFVGL+KG                 KTSK   F RN+IREVAGF  Y+K I
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 44 NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNV 79
           +LLKVGKDKR LKV ++K+G  + +  K EE  +V
Sbjct: 61 TELLKVGKDKRALKVRQEKVGHSQES--KEEERGDV 94

Daucus carota (taxid: 4039)

>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query: 16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
          +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREE 89

Query: 76 MSNVL 80
          +SNVL
Sbjct: 90 LSNVL 94

Xenopus tropicalis (taxid: 8364)

>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query: 16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
          +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREE 89

Query: 76 MSNVL 80
          +SNVL
Sbjct: 90 LSNVL 94

Xenopus laevis (taxid: 8355)

>sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query: 16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
          +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query: 76 MSNVL 80
          +SNVL
Sbjct: 90 LSNVL 94

Gallus gallus (taxid: 9031)

>sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query: 16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
          +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query: 76 MSNVL 80
          +SNVL
Sbjct: 90 LSNVL 94

Lapemis hardwickii (taxid: 8781)

>sp|Q90YT2|RL36_ICTPU 60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 51/78 (65%), Gaps = 7/78 (8%)

Query: 3  PKQSNTGLFVGLSKGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKK 62
          PK S  G       G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK+
Sbjct: 24 PKHSRRG-------GRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKR 76

Query: 63 LGAHKRAKMKREEMSNVL 80
          +G H RAK KREE+SN+L
Sbjct: 77 VGTHIRAKRKREELSNIL 94

Ictalurus punctatus (taxid: 7998)

>sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query: 16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
          +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct: 30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query: 76 MSNVL 80
          +SNVL
Sbjct: 90 LSNVL 94

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
224116904	110	predicted protein [Populus trichocarpa]	1.0	0.845	0.645	6e-27
224079093	110	predicted protein [Populus trichocarpa]	1.0	0.845	0.645	9e-27
197312875	110	ribosomal protein L36 [Rheum australe]	1.0	0.845	0.627	2e-26
224119984	110	predicted protein [Populus trichocarpa]	1.0	0.845	0.636	5e-26
374096129	110	60S ribosomal protein L36 [Wolffia austr	1.0	0.845	0.627	7e-26
357443981	147	60S ribosomal protein L36 [Medicago trun	0.946	0.598	0.647	1e-25
224137042	110	predicted protein [Populus trichocarpa]	1.0	0.845	0.627	1e-25
357443979	111	60S ribosomal protein L36 [Medicago trun	0.946	0.792	0.647	1e-25
388518253	111	unknown [Medicago truncatula]	0.946	0.792	0.647	1e-25
449446023	110	PREDICTED: 60S ribosomal protein L36-2-l	1.0	0.845	0.627	2e-25

>gi|224116904|ref|XP_002317423.1| predicted protein [Populus trichocarpa] gi|222860488|gb|EEE98035.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 77/110 (70%), Gaps = 17/110 (15%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ NTGLFVGL+KG                 KTSK V F R++IREVAGFA Y+K I
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVQFVRSLIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK 93
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMSNVLR  RA GG EK K
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAAGGGEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079093|ref|XP_002305746.1| predicted protein [Populus trichocarpa] gi|118484529|gb|ABK94139.1| unknown [Populus trichocarpa] gi|118487398|gb|ABK95527.1| unknown [Populus trichocarpa] gi|222848710|gb|EEE86257.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 77/110 (70%), Gaps = 17/110 (15%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ NTGLFVGL+KG                 KTSK V F R++IREVAGFA Y+K I
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK 93
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMSNVLR  RA GG EK K
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197312875|gb|ACH63218.1| ribosomal protein L36 [Rheum australe]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 77/110 (70%), Gaps = 17/110 (15%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ ++GLFVGL+KG                 KTSK V F RN+IREVAGFA Y+K I
Sbjct: 1   MAPKQPSSGLFVGLNKGHIVTKKELPAKPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK 93
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMSNVLR  R+ GG EK K
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGAEKKK 110

Source: Rheum australe

Species: Rheum australe

Genus: Rheum

Family: Polygonaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119984|ref|XP_002318214.1| predicted protein [Populus trichocarpa] gi|118484769|gb|ABK94253.1| unknown [Populus trichocarpa] gi|222858887|gb|EEE96434.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 77/110 (70%), Gaps = 17/110 (15%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ NTGLFVGL+KG                 K+SK V F R++IREVAGFA Y+K I
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK 93
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMSNVLR  RA GG EK K
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAAGGGEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374096129|gb|AEY84977.1| 60S ribosomal protein L36 [Wolffia australiana]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 75/110 (68%), Gaps = 17/110 (15%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PK  NTGLFVGL+KG                 KTSK V F RNVIREVAGFA Y+K I
Sbjct: 1   MAPKPPNTGLFVGLNKGHIVTKRELPPRPSDRKGKTSKRVHFVRNVIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK 93
            +LLKVGKDKR LK+AK+KLG HKRAK KREEM+NVLR  RA G  EK K
Sbjct: 61  TELLKVGKDKRALKLAKRKLGTHKRAKKKREEMANVLRKMRAAGVSEKKK 110

Source: Wolffia australiana

Species: Wolffia australiana

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443981|ref|XP_003592268.1| 60S ribosomal protein L36 [Medicago truncatula] gi|355481316|gb|AES62519.1| 60S ribosomal protein L36 [Medicago truncatula]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 74/105 (70%), Gaps = 17/105 (16%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ +TGLFVGL+KG                 KTSK V F RN+IREVAGFA Y+K I
Sbjct: 37  MAPKQPSTGLFVGLNKGHIVTKKELAPRPSARKGKTSKRVHFVRNLIREVAGFAPYEKRI 96

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGG 88
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMSNVLR  RA GG
Sbjct: 97  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG 141

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137042|ref|XP_002322479.1| predicted protein [Populus trichocarpa] gi|118482219|gb|ABK93038.1| unknown [Populus trichocarpa] gi|118484900|gb|ABK94316.1| unknown [Populus trichocarpa] gi|222869475|gb|EEF06606.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 77/110 (70%), Gaps = 17/110 (15%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ NTGLFVGL+KG                 K+SK V F R++IREVAGFA Y+K I
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK 93
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMSNVLR  R+ GG EK K
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGGEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443979|ref|XP_003592267.1| 60S ribosomal protein L36 [Medicago truncatula] gi|355481315|gb|AES62518.1| 60S ribosomal protein L36 [Medicago truncatula] gi|388508142|gb|AFK42137.1| unknown [Medicago truncatula]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 74/105 (70%), Gaps = 17/105 (16%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ +TGLFVGL+KG                 KTSK V F RN+IREVAGFA Y+K I
Sbjct: 1   MAPKQPSTGLFVGLNKGHIVTKKELAPRPSARKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGG 88
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMSNVLR  RA GG
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG 105

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518253|gb|AFK47188.1| unknown [Medicago truncatula]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 74/105 (70%), Gaps = 17/105 (16%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ +TGLFVGL+KG                 KTSK V F RN+IREVAGFA Y+K I
Sbjct: 1   MAPKQPSTGLFVGLNKGHVVTKKELALKPSSRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGG 88
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMSNVLR  RA GG
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG 105

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446023|ref|XP_004140771.1| PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] gi|449469345|ref|XP_004152381.1| PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] gi|449518411|ref|XP_004166235.1| PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] gi|449528180|ref|XP_004171084.1| PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] gi|307136494|gb|ADN34294.1| 60S ribosomal protein l36e [Cucumis melo subsp. melo]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 77/110 (70%), Gaps = 17/110 (15%)

Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M PKQ NTGLFVGL+KG                 K+SK V F R++IREVAGFA Y+K I
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGGEEKTK 93
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMS+VLR  RA GG EK K
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2084395	112	AT3G53740 [Arabidopsis thalian	0.838	0.696	0.687	4.4e-25
TAIR|locus:2040756	113	AT2G37600 [Arabidopsis thalian	0.784	0.646	0.712	2.4e-24
TAIR|locus:2181758	108	AT5G02450 [Arabidopsis thalian	0.838	0.722	0.675	3.9e-24
POMBASE|SPBC405.07	99	rpl3602 "60S ribosomal protein	0.741	0.696	0.478	1.4e-15
POMBASE|SPCC970.05	99	rpl3601 "60S ribosomal protein	0.741	0.696	0.478	1.7e-15
RGD|2322117	105	LOC100360439 "ribosomal protei	0.806	0.714	0.52	8.8e-15
RGD|2319728	104	LOC100361644 "ribosomal protei	0.806	0.721	0.506	1.4e-14
RGD|2320881	104	LOC100361079 "ribosomal protei	0.806	0.721	0.506	1.4e-14
UNIPROTKB|Q98TF6	105	RPL36 "60S ribosomal protein L	0.806	0.714	0.506	1.8e-14
UNIPROTKB|Q3T171	105	RPL36 "60S ribosomal protein L	0.806	0.714	0.506	1.8e-14

TAIR|locus:2084395 AT3G53740 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
 Identities = 55/80 (68%), Positives = 62/80 (77%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             KGKTSK   F RN+I+EVAG A Y+K I +LLKVGKDKR LKVAK+KLG HKRAK KREE
Sbjct:    33 KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query:    76 MSNVLRWTRATGG--EEKTK 93
             MS+VLR  R+ GG   EK K
Sbjct:    93 MSSVLRKMRSGGGGATEKKK 112

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2040756 AT2G37600 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 52/73 (71%), Positives = 58/73 (79%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             KGKTSK   F R +IREVAG A Y+K I +LLKVGKDKR LKVAK+KLG HKRAK KREE
Sbjct:    33 KGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 92

Query:    76 MSNVLRWTRATGG 88
             MS+VLR  R+ GG
Sbjct:    93 MSSVLRKMRSLGG 105

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2181758 AT5G02450 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 54/80 (67%), Positives = 61/80 (76%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             KGKTSK   F RN+I+EVAG A Y+K I +LLKVGKDKR LKVAK+KLG HKRAK KREE
Sbjct:    29 KGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 88

Query:    76 MSNVLRWTRA--TGGEEKTK 93
             MS+VLR  R+   G  EK K
Sbjct:    89 MSSVLRKMRSGGAGASEKKK 108

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

POMBASE|SPBC405.07 rpl3602 "60S ribosomal protein L36" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 164 (62.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 33/69 (47%), Positives = 51/69 (73%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             KG  SK   F R+++REVAGFA Y++ + +L++  +DKR  K+AKK+LG  KRAK K EE
Sbjct:    28 KGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEE 87

Query:    76 MSNVLRWTR 84
             +++V++ +R
Sbjct:    88 LTSVIQSSR 96

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

POMBASE|SPCC970.05 rpl3601 "60S ribosomal protein L36" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 168 (64.2 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 33/69 (47%), Positives = 52/69 (75%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             KG+ SK   F R+++REVAGFA Y++ + +L++  +DKR  K+AKK+LG  KRAK K EE
Sbjct:    28 KGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEE 87

Query:    76 MSNVLRWTR 84
             +++V++ +R
Sbjct:    88 LTSVIQSSR 96

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

RGD|2322117 LOC100360439 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KKK+G H RAK KREE
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKKVGTHIRAKRKREE 89

Query:    76 MSNVLRWTRATGGEE 90
             +SNVL   R    ++
Sbjct:    90 LSNVLAAMRKAAAKK 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2319728 LOC100361644 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    76 MSNVLRWTRATGGEE 90
             +SNVL   R    ++
Sbjct:    90 LSNVLAAMRKAAAKD 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2320881 LOC100361079 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYQRRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    76 MSNVLRWTRATGGEE 90
             +SNVL   R    ++
Sbjct:    90 LSNVLAAMRKAAAKD 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q98TF6 RPL36 "60S ribosomal protein L36" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    76 MSNVLRWTRATGGEE 90
             +SNVL   R    ++
Sbjct:    90 LSNVLAAMRKAAAKK 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q3T171 RPL36 "60S ribosomal protein L36" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query:    16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
             +G+ +K   F R++IREV GFA Y++   +LLKV KDKR LK  KK++G H RAK KREE
Sbjct:    30 RGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89

Query:    76 MSNVLRWTRATGGEE 90
             +SNVL   R    ++
Sbjct:    90 LSNVLAAMRKAAAKK 104

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Q415	RL36_DANRE	No assigned EC number	0.5538	0.6989	0.6190	yes	no
Q3T171	RL36_BOVIN	No assigned EC number	0.5692	0.6989	0.6190	yes	no
Q9Y3U8	RL36_HUMAN	No assigned EC number	0.5692	0.6989	0.6190	yes	no
P39032	RL36_RAT	No assigned EC number	0.5538	0.6989	0.6190	yes	no
Q6DER2	RL36_XENTR	No assigned EC number	0.5692	0.6989	0.6190	yes	no
Q98TF6	RL36_CHICK	No assigned EC number	0.5692	0.6989	0.6190	yes	no
Q5RAZ9	RL36_PONAB	No assigned EC number	0.5692	0.6989	0.6190	yes	no
P47964	RL36_MOUSE	No assigned EC number	0.5230	0.6989	0.6190	yes	no
Q9M352	RL362_ARATH	No assigned EC number	0.5809	0.9462	0.7857	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XI0796	hypothetical protein (111 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	ABP1	auxin binding protein (152 aa)							•		0.702
	eugene3.00011799	RecName- Full=60S ribosomal protein L6; (232 aa)				•	•	•	•		0.606
	estExt_fgenesh4_pg.C_LG_IX0938	RecName- Full=60S ribosomal protein L6; (232 aa)				•	•	•	•		0.589
	eugene3.00002480	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•				0.508
	estExt_fgenesh4_pm.C_LG_XVII0043	SubName- Full=Putative uncharacterized protein; (206 aa)				•	•				0.508
	estExt_Genewise1_v1.C_LG_XIII3119	SubName- Full=Putative uncharacterized protein; (131 aa)				•		•			0.495
	eugene3.00190574	SubName- Full=Putative uncharacterized protein; (132 aa)				•		•			0.495
	estExt_fgenesh4_pm.C_LG_IX0111	SubName- Full=Putative uncharacterized protein; (113 aa)				•	•	•			0.484
	estExt_fgenesh4_pg.C_LG_VII0552	SubName- Full=Putative uncharacterized protein; (146 aa)				•	•		•		0.479
	fgenesh4_pm.C_LG_III000548	RecName- Full=Ribosomal protein S27; (86 aa)				•		•			0.478

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam01158	95	pfam01158, Ribosomal_L36e, Ribosomal protein L36e	1e-21
PTZ00196	98	PTZ00196, PTZ00196, 60S ribosomal protein L36; Pro	4e-16
COG5051	97	COG5051, RPL36A, Ribosomal protein L36E [Translati	2e-09

>gnl|CDD|201631 pfam01158, Ribosomal_L36e, Ribosomal protein L36e

 Score = 80.7 bits (200), Expect = 1e-21
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
          KGK SK   F R++IREVAGFA Y+K + +LLKVGKDKR LK AKK+LG H+RAK KREE
Sbjct: 25 KGKLSKRTKFVRDIIREVAGFAPYEKRVIELLKVGKDKRALKFAKKRLGTHRRAKRKREE 84

Query: 76 MSNVLRWTR 84
          +SNVL   R
Sbjct: 85 LSNVLAAQR 93

Length = 95

>gnl|CDD|185509 PTZ00196, PTZ00196, 60S ribosomal protein L36; Provisional

 Score = 66.6 bits (163), Expect = 4e-16
 Identities = 39/70 (55%), Positives = 49/70 (70%)

Query: 16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
          KG  SK     ++VIREV GF+ Y++ + +LLKVGKDKR LK AKK+LG HKRAK KR+E
Sbjct: 28 KGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRAKAKRDE 87

Query: 76 MSNVLRWTRA 85
          +   LR  R 
Sbjct: 88 IQEALRAQRK 97

Length = 98

>gnl|CDD|227384 COG5051, RPL36A, Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

 Score = 50.0 bits (119), Expect = 2e-09
 Identities = 29/65 (44%), Positives = 50/65 (76%)

Query: 16 KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREE 75
          KG+ SK  +F R+++RE+AG + Y++ + +L++  +DKR  K+AKK+LG+ KRAK K EE
Sbjct: 30 KGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAKAKVEE 89

Query: 76 MSNVL 80
          +++V+
Sbjct: 90 LTSVI 94

Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF01158	98	Ribosomal_L36e: Ribosomal protein L36e; InterPro:	100.0
PTZ00196	98	60S ribosomal protein L36; Provisional	100.0
KOG3452	102	consensus 60S ribosomal protein L36 [Translation,	100.0
COG5051	97	RPL36A Ribosomal protein L36E [Translation, riboso	99.96

>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.3e-47  Score=261.63  Aligned_cols=80  Identities=59%  Similarity=0.818  Sum_probs=74.7

Q ss_pred             CccceeeecCCC-----------------CCcchhHHHHHHHHhhccchhhHHHHhhhhccchhhHhHHHHHhhchhHHH
Q 035914            7 NTGLFVGLSKGK-----------------TSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRA   69 (93)
Q Consensus         7 ~~g~avGlnkg~-----------------~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~skdKrALKf~KKRlGth~RA   69 (93)
                      ++||||||||||                 +|+|++||||||+|||||||||+|+||||++|+||+||||+|||||||+||
T Consensus         2 ~~~iavGlnkGh~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~RA   81 (98)
T PF01158_consen    2 RYGIAVGLNKGHKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIRA   81 (98)
T ss_dssp             -TTSTTSSS-S-----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHH
T ss_pred             CCceeeeCCCCcccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHHH
Confidence            589999999976                 689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 035914           70 KMKREEMSNVLRWTRAT   86 (93)
Q Consensus        70 KrK~eel~~vl~~~Rk~   86 (93)
                      |+|+|||+|||++||++
T Consensus        82 KrKrEel~~vl~~~rk~   98 (98)
T PF01158_consen   82 KRKREELSNVLAAMRKA   98 (98)
T ss_dssp             HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.

>PTZ00196 60S ribosomal protein L36; Provisional

Probab=100.00  E-value=2.7e-46  Score=258.01  Aligned_cols=80  Identities=55%  Similarity=0.834  Sum_probs=77.1

Q ss_pred             CccceeeecCCC-----------------CCcchhHHHHHHHHhhccchhhHHHHhhhhccchhhHhHHHHHhhchhHHH
Q 035914            7 NTGLFVGLSKGK-----------------TSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRA   69 (93)
Q Consensus         7 ~~g~avGlnkg~-----------------~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~skdKrALKf~KKRlGth~RA   69 (93)
                      ++||||||||||                 +|||++||||||+|||||||||+|+||||++|+||+||||+|+|||||+||
T Consensus         2 ~~g~avGlnKGh~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~Ra   81 (98)
T PTZ00196          2 RTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRA   81 (98)
T ss_pred             CCceeeecCCCcccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHHH
Confidence            589999999965                 699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 035914           70 KMKREEMSNVLRWTRAT   86 (93)
Q Consensus        70 KrK~eel~~vl~~~Rk~   86 (93)
                      |+|+|||+|||++||+.
T Consensus        82 K~Kreel~~vl~~~rkk   98 (98)
T PTZ00196         82 KAKRDEIQEALRAQRKK   98 (98)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999973

>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-43  Score=245.93  Aligned_cols=82  Identities=60%  Similarity=0.822  Sum_probs=78.5

Q ss_pred             CccceeeecCCC-----------------CCcchhHHHHHHHHhhccchhhHHHHhhhhccchhhHhHHHHHhhchhHHH
Q 035914            7 NTGLFVGLSKGK-----------------TSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRA   69 (93)
Q Consensus         7 ~~g~avGlnkg~-----------------~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~skdKrALKf~KKRlGth~RA   69 (93)
                      .+|++||||||+                 +|+|++||+|+|+|||||||||+++||||++|+||+|+||+|+|||||+||
T Consensus         4 ~~~~~vglnkgh~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RA   83 (102)
T KOG3452|consen    4 CYGLAVGLNKGHKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRA   83 (102)
T ss_pred             ccceeecccccchhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHH
Confidence            379999999965                 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 035914           70 KMKREEMSNVLRWTRATGG   88 (93)
Q Consensus        70 KrK~eel~~vl~~~Rk~~~   88 (93)
                      |+|+|||+|||++||++++
T Consensus        84 k~KrEELsnvl~~~rk~~~  102 (102)
T KOG3452|consen   84 KRKREELSNVLAAMRKAHA  102 (102)
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            9999999999999999863

>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.6e-29  Score=172.71  Aligned_cols=75  Identities=45%  Similarity=0.769  Sum_probs=71.8

Q ss_pred             ccceeeecCC-----------------CCCcchhHHHHHHHHhhccchhhHHHHhhhhccchhhHhHHHHHhhchhHHHH
Q 035914            8 TGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAK   70 (93)
Q Consensus         8 ~g~avGlnkg-----------------~~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~skdKrALKf~KKRlGth~RAK   70 (93)
                      .|++||||+|                 .+|+|+.||+++++|++||+|||+++||||++|.|++|.|++|||||||+||+
T Consensus         5 ~g~~~glNkgKkvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAk   84 (97)
T COG5051           5 PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAK   84 (97)
T ss_pred             cchhhhhcccceeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHH
Confidence            5899999994                 48999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 035914           71 MKREEMSNVLRW   82 (93)
Q Consensus        71 rK~eel~~vl~~   82 (93)
                      .|.|||.++|++
T Consensus        85 aKvEel~~~i~~   96 (97)
T COG5051          85 AKVEELTSVIQS   96 (97)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
3izr_k	112	Localization Of The Large Subunit Ribosomal Protein		5e-25
3izs_k	100	Localization Of The Large Subunit Ribosomal Protein		1e-09
4a18_Q	104	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-09
3zf7_m	109	High-resolution Cryo-electron Microscopy Structure		2e-06

>pdb|3IZR|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 112

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 71/105 (67%), Gaps = 17/105 (16%)
Query: 1   MVPKQSNTGLFVGLSKG-----------------KTSKGVDFERNVIREVAGFASYKKGI 43
           M P Q  +GLFVG++KG                 K +K V F RN+IREVAGFA Y+K I
Sbjct: 1   MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRI 60
Query: 44  NKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTRATGG 88
            +LLKVGKDKR LKVAK+KLG HKRAK KREEMS+VLR  R+ GG
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGG 105

>pdb|3IZS|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 100

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 17/94 (18%)
Query: 8  TGLFVGLSKGK-----------------TSKGVDFERNVIREVAGFASYKKGINKLLKVG 50
          TG+ +GL+KGK                  S    F R+++RE+AG + Y++ +  L++  
Sbjct: 5  TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 51 KDKRTLKVAKKKLGAHKRAKMKREEMSNVLRWTR 84
           +KR  KVAKK+LG+  RAK K EEM+N++  +R
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98

>pdb|4A18|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 104

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 16  KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVG--KD-KRTLKVAKKKLGAHKRAKMK 72
           KGK  K V   R VIREV GFA Y+K I +L+K G  KD K+  K+A+K+LG H+RAK+K
Sbjct: 31  KGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVK 90
Query: 73  REEMSNVLRWTR 84
           +  +   +R  R
Sbjct: 91  KALLEEAVRAQR 102

>pdb|3ZF7|MM Chain m, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 109

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 29  VIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLR 81
           +I ++ GF+  ++ + +LL+VGKDKR LK  KK+LG+ K AK +R ++   LR
Sbjct: 51  IISDLVGFSPMERRVQELLRVGKDKRALKFCKKRLGSIKAAKKRRAKVEEALR 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	2e-16
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	6e-16
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	2e-13

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q Length = 104

 Score = 59.6 bits (144), Expect = 2e-13
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 16  KGKTSKGVDFERNVIREVAGFASYKKGINKLLKVGK---DKRTLKVAKKKLGAHKRAKMK 72
           KGK  K V   R VIREV GFA Y+K I +L+K G     K+  K+A+K+LG H+RAK+K
Sbjct: 31  KGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVK 90

Query: 73  REEMSNVLRWTR 84
           +  +   +R  R
Sbjct: 91  KALLEEAVRAQR 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
3iz5_k	112	60S ribosomal protein L36 (L36E); eukaryotic ribos	100.0
3izc_k	100	60S ribosomal protein RPL36 (L36E); eukaryotic rib	100.0
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	100.0

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q

Probab=100.00  E-value=5.2e-46  Score=257.88  Aligned_cols=79  Identities=44%  Similarity=0.710  Sum_probs=75.9

Q ss_pred             CccceeeecCCC--------------------CCcchhHHHHHHHHhhccchhhHHHHhhhhccc---hhhHhHHHHHhh
Q 035914            7 NTGLFVGLSKGK--------------------TSKGVDFERNVIREVAGFASYKKGINKLLKVGK---DKRTLKVAKKKL   63 (93)
Q Consensus         7 ~~g~avGlnkg~--------------------~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~sk---dKrALKf~KKRl   63 (93)
                      ++||||||||||                    +|||++||||||+|||||||||+|+||||++|+   |||||||+|+||
T Consensus         2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl   81 (104)
T 4a18_Q            2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL   81 (104)
T ss_dssp             CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence            478999999976                    578999999999999999999999999999999   999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh
Q 035914           64 GAHKRAKMKREEMSNVLRWTRA   85 (93)
Q Consensus        64 Gth~RAKrK~eel~~vl~~~Rk   85 (93)
                      |||+|||+|+|||+|||++||+
T Consensus        82 Gth~RAKrKreel~~vl~~~Rk  103 (104)
T 4a18_Q           82 GTHRRAKVKKALLEEAVRAQRK  103 (104)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00