Citrus Sinensis ID: 035922

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
Protein Sequence
MGTTTRVSLPYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKISRGLK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEccccccccccccccEEcccccccccccHHHHHHHccccccccccccEEEccHHHHccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEccccccccccccccEEccccEEEEcccHHHHccccccEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEcccccccccccHHHHcccccccEEcccccccccccHHHHccccccEEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccccEEEEcccccccccccHHHccHHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEcEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccHHHHHHccccccEEEEEccccccccccHHHHHHHccccEEEEEEEccEEEccHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEccccEEEEEccHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccHHHccccccccccccHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mgtttrvslPYFVVHAALVLVFCFsfqfvpkshgaraarvagneTDREALLEFKskitvdpfgvlgswnesshfckwheslklagsispyignLSFLRRLHldnnnfthaippeiGRLRRlrgltlnnnsiggeipatmsrcsNIILMDLSVnqllgnippefgslskIKDLRSFMNNltgsipsslgnlSSIIRLSLTYNNIARsipdtlgylenlsflslggnmlsgtipssifnrssITTFSVVLNRmqgnipldfgftlpnlqhfgivFNNFTELLLlndnnfgglipeCISNFSTTLASLfldnnkifgsippgigklVNLRRLYVWNNklsgtipsaigDLQNLrmlgmsgnrfsgniplsvgnLKMLIQLEVSenflqgtipsslcqcksliginfsknnlsgtippqlfglsSLSIsldlsrnhftgslpievgnlknlgvldisgnllsgeipislgscTSLEKLLMQgnkfygpipsslrslrglsvwdfaqnnlsgeipKFLAGFKLLENVNlsyndlgaryvptegviknssatsvmgnsklcggipklqfprctknnssnqkisrglk
Flexible Loop (DISEMBL)
mgtttrvslpYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFThaippeigrlrRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIpklqfprctknnssnqkisrglk
Low Complexity Region (SEG)
MGTTTRVSLPYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIgrlrrlrgltlnnnSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEllllndnnFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQlfglsslsisldlsRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKISRGLK
Disordered region (IsUnstruct)
******VSLPYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQF******************
Disordered Region (DISOPRED)
*********PYFVVHAALVLVFCFSFQFVPKSHGAR********TDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPK*********************
Disordered Region (DISEMBL)
MGTTTRVSLPYFVVHAALVLVFCFSFQFVPK*************TDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCT**************
Disordered Region (DISPRO)
***TTRVSLPYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKN************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTTTRVSLPYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKISRGLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	581	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.910	0.513	0.391	1e-99
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.896	0.515	0.364	4e-94
Q9SD62	1025	Putative receptor-like pr	no	no	0.924	0.523	0.404	4e-94
Q9FL28	1173	LRR receptor-like serine/	no	no	0.839	0.416	0.340	1e-65
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.743	0.402	0.375	3e-64
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.795	0.471	0.342	2e-63
Q9LHP4	1141	Receptor-like protein kin	no	no	0.755	0.384	0.361	9e-63
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.764	0.424	0.345	9e-63
C0LGV1	1135	LRR receptor-like serine/	no	no	0.795	0.407	0.337	2e-62
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.786	0.415	0.366	4e-62

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  364 bits (934), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 242/618 (39%), Positives = 328/618 (53%), Gaps = 89/618 (14%)

Query: 43  NETDREALLEFKSKITVD-PFGVLGSWNESSHFCKW--------HESL--------KLAG 85
           NETD +ALLEFKS+++ +    VL SWN SS FC W         E +        KL G
Sbjct: 28  NETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTG 87

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
            ISP IGNLSFLR L+L +N+F   IP ++GRL RL+ L ++ N + G IP+++S CS +
Sbjct: 88  VISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRL 147

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
             +DLS N L   +P E GSLSK+  L    NNLTG+ P+SLGNL+S+ +L   YN +  
Sbjct: 148 STVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRG 207

Query: 206 SIPDTLGYLENLSFLSL------------------------------------------- 222
            IPD +  L  + F  +                                           
Sbjct: 208 EIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPN 267

Query: 223 ------GGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGI----- 271
                 G N  +G IP ++ N SS+  F +  N + G+IPL FG  L NL   GI     
Sbjct: 268 LRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFG-KLRNLWWLGIRNNSL 326

Query: 272 ------------VFNNFTELLLLN--DNNFGGLIPECISNFSTTLASLFLDNNKIFGSIP 317
                          N T+L  L+   N  GG +P  I+N STTL SLFL  N I G+IP
Sbjct: 327 GNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIP 386

Query: 318 PGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377
             IG LV+L+ L +  N LSG +P + G L NL+++ +  N  SG IP   GN+  L +L
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKL 446

Query: 378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSL 437
            ++ N   G IP SL +C+ L+ +    N L+GTIP ++  + SL+  +DLS N  TG  
Sbjct: 447 HLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAY-IDLSNNFLTGHF 505

Query: 438 PIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSV 497
           P EVG L+ L  L  S N LSG++P ++G C S+E L MQGN F G IP   R L  L  
Sbjct: 506 PEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPDISR-LVSLKN 564

Query: 498 WDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG 557
            DF+ NNLSG IP++LA    L N+NLS N    R VPT GV +N++A SV GN+ +CGG
Sbjct: 565 VDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGR-VPTTGVFRNATAVSVFGNTNICGG 623

Query: 558 IPKLQFPRCTKNNSSNQK 575
           + ++Q   C    S  ++
Sbjct: 624 VREMQLKPCIVQASPRKR 641

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  345 bits (886), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 320/606 (52%), Gaps = 85/606 (14%)

Query: 43  NETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHE----------------SLKLAGS 86
           +ETDR+ALL+FKS+++ D   VL SWN S   C W                   L+L G 
Sbjct: 22  DETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGV 81

Query: 87  ISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNII 146
           ISP IGNLSFL  L L  N F   IP E+G+L RL  L +  N + G IP  +  CS ++
Sbjct: 82  ISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLL 141

Query: 147 LMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARS 206
            + L  N+L G++P E GSL+ +  L  + NN+ G +P+SLGNL+ + +L+L++NN+   
Sbjct: 142 NLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query: 207 IPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF----- 261
           IP  +  L  +  L L  N  SG  P +++N SS+    +  N   G +  D G      
Sbjct: 202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query: 262 ----------------TLPN---LQHFGIVFNNFT------------------------- 277
                           TL N   L+  G+  NN T                         
Sbjct: 262 LSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSD 321

Query: 278 -----------------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320
                            E L +  N  GG +P  I+N S  L +L L    I GSIP  I
Sbjct: 322 SSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDI 381

Query: 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380
           G L+NL++L +  N LSG +P+++G L NLR L +  NR SG IP  +GN+ ML  L++S
Sbjct: 382 GNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLS 441

Query: 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIE 440
            N  +G +P+SL  C  L+ +    N L+GTIP ++  +  L + LD+S N   GSLP +
Sbjct: 442 NNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQD 500

Query: 441 VGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDF 500
           +G L+NLG L +  N LSG++P +LG+C ++E L ++GN FYG IP  L+ L G+   D 
Sbjct: 501 IGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDL 559

Query: 501 AQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPK 560
           + N+LSG IP++ A F  LE +NLS+N+L  + VP +G+ +N++  S++GN+ LCGGI  
Sbjct: 560 SNNDLSGSIPEYFASFSKLEYLNLSFNNLEGK-VPVKGIFENATTVSIVGNNDLCGGIMG 618

Query: 561 LQFPRC 566
            Q   C
Sbjct: 619 FQLKPC 624

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  345 bits (886), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 255/630 (40%), Positives = 342/630 (54%), Gaps = 93/630 (14%)

Query: 35  ARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKW--------HE------- 79
           A+  R+   ETD++ALLEFKS+++     VLGSWN+S   C W        H        
Sbjct: 30  AQTIRLT-EETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDL 88

Query: 80  -SLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPAT 138
             LKL G +SP++GNLSFLR L+L +N F  AIP E+G L RL+ L ++NN  GG IP  
Sbjct: 89  GGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVV 148

Query: 139 MSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSL 198
           +S CS++  +DLS N L   +P EFGSLSK+  L    NNLTG  P+SLGNL+S+  L  
Sbjct: 149 LSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDF 208

Query: 199 TYNNIARSIPDTLGYLE------------------------------------------- 215
            YN I   IP  +  L+                                           
Sbjct: 209 IYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPD 268

Query: 216 ------NLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG--------- 260
                 NL  L +G N  +GTIP ++ N SS+    +  N + G IPL FG         
Sbjct: 269 FGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLG 328

Query: 261 --------FTLPNLQHFGIVFNNFTELLLLND--NNFGGLIPECISNFSTTLASLFLDNN 310
                   ++  +L   G    N ++L  LN   N  GG +P  I+N ST L  L L  N
Sbjct: 329 LNNNSLGNYSSGDLDFLG-ALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGN 387

Query: 311 KIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGN 370
            I GSIP GIG LV+L+ L +  N L+G +P ++G+L  LR + +  N  SG IP S+GN
Sbjct: 388 LISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGN 447

Query: 371 LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSR 430
           +  L  L +  N  +G+IPSSL  C  L+ +N   N L+G+IP +L  L SL + L++S 
Sbjct: 448 ISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVV-LNVSF 506

Query: 431 NHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLR 490
           N   G L  ++G LK L  LD+S N LSG+IP +L +C SLE LL+QGN F GPIP  +R
Sbjct: 507 NLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IR 565

Query: 491 SLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMG 550
            L GL   D ++NNLSG IP+++A F  L+N+NLS N+     VPTEGV +N+SA SV G
Sbjct: 566 GLTGLRFLDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGA-VPTEGVFRNTSAMSVFG 624

Query: 551 NSKLCGGIPKLQFPRCT----KNNSSNQKI 576
           N  LCGGIP LQ   C+    + +SS +KI
Sbjct: 625 NINLCGGIPSLQLQPCSVELPRRHSSVRKI 654

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  251 bits (642), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 276/552 (50%), Gaps = 64/552 (11%)

Query: 83  LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRC 142
           L G I   IGN S L +L L +N  T  IP E+G L +L+ L +  N +   IP+++ R 
Sbjct: 252 LEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRL 311

Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
           + +  + LS N L+G I  E G L  ++ L    NN TG  P S+ NL ++  L++ +NN
Sbjct: 312 TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNN 371

Query: 203 IARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG-- 260
           I+  +P  LG L NL  LS   N+L+G IPSSI N + +    +  N+M G IP  FG  
Sbjct: 372 ISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRM 431

Query: 261 --------------------FTLPNLQHFGIVFNNFT-------------ELLLLNDNNF 287
                               F   NL+   +  NN T              +L ++ N+ 
Sbjct: 432 NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSL 491

Query: 288 GGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDL 347
            G IP  I N    L  L+L +N   G IP  +  L  L+ L +++N L G IP  + D+
Sbjct: 492 TGPIPREIGNLKD-LNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDM 550

Query: 348 QNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN 407
           + L +L +S N+FSG IP     L+ L  L +  N   G+IP+SL     L   + S N 
Sbjct: 551 KLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNL 610

Query: 408 LSGTIPPQLFG-LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLG 466
           L+GTIP +L   L ++ + L+ S N  TG++P E+G L+ +  +D+S NL SG IP SL 
Sbjct: 611 LTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQ 670

Query: 467 SCTSLEKL--------------LMQG-----------NKFYGPIPSSLRSLRGLSVWDFA 501
           +C ++  L              + QG           N F G IP S  ++  L   D +
Sbjct: 671 ACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLS 730

Query: 502 QNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKL 561
            NNL+GEIP+ LA    L+++ L+ N+L   +VP  GV KN +A+ +MGN+ LCG    L
Sbjct: 731 SNNLTGEIPESLANLSTLKHLKLASNNLKG-HVPESGVFKNINASDLMGNTDLCGSKKPL 789

Query: 562 QFPRCTKNNSSN 573
           + P   K  SS+
Sbjct: 790 K-PCTIKQKSSH 800

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  246 bits (629), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 177/472 (37%), Positives = 261/472 (55%), Gaps = 40/472 (8%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNS-IGGEIPATMS 140
           KL+GSI   I NL  L+ L L +N    +IP   G L  L+   L  N+ +GG IPA + 
Sbjct: 150 KLSGSIPSQISNLFALQVLCLQDNLLNGSIPSSFGSLVSLQQFRLGGNTNLGGPIPAQLG 209

Query: 141 RCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
              N+  +  + + L G+IP  FG+L  ++ L  +   ++G+IP  LG  S +  L L  
Sbjct: 210 FLKNLTTLGFAASGLSGSIPSTFGNLVNLQTLALYDTEISGTIPPQLGLCSELRNLYLHM 269

Query: 201 NNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG 260
           N +  SIP  LG L+ ++ L L GN LSG IP  I N SS+  F V  N + G+IP D G
Sbjct: 270 NKLTGSIPKELGKLQKITSLLLWGNSLSGVIPPEISNCSSLVVFDVSANDLTGDIPGDLG 329

Query: 261 FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320
             +            + E L L+DN F G IP  +SN S+ +A L LD NK+ GSIP  I
Sbjct: 330 KLV------------WLEQLQLSDNMFTGQIPWELSNCSSLIA-LQLDKNKLSGSIPSQI 376

Query: 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380
           G L +L+  ++W N +SGTIPS+ G+  +L  L +S N+ +G IP  + +LK L +L + 
Sbjct: 377 GNLKSLQSFFLWENSISGTIPSSFGNCTDLVALDLSRNKLTGRIPEELFSLKRLSKLLLL 436

Query: 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIE 440
            N L G +P S+ +C+SL+ +   +N LSG IP ++  L +L + LDL  NHF+G LP E
Sbjct: 437 GNSLSGGLPKSVAKCQSLVRLRVGENQLSGQIPKEIGELQNL-VFLDLYMNHFSGGLPYE 495

Query: 441 VGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF------------------- 481
           + N+  L +LD+  N ++G+IP  LG+  +LE+L +  N F                   
Sbjct: 496 ISNITVLELLDVHNNYITGDIPAQLGNLVNLEQLDLSRNSFTGNIPLSFGNLSYLNKLIL 555

Query: 482 -----YGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLE-NVNLSYN 527
                 G IP S+++L+ L++ D + N+LSGEIP+ L     L  N++LSYN
Sbjct: 556 NNNLLTGQIPKSIKNLQKLTLLDLSYNSLSGEIPQELGQVTSLTINLDLSYN 607

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  244 bits (622), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 268/538 (49%), Gaps = 76/538 (14%)

Query: 83  LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRR-LRGLTLNNNSIGGEIPATMSR 141
           L G ISP I NL+ L  L L  N F   IPPEIG L   L+ L+L+ N + G IP  +  
Sbjct: 78  LGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELGL 137

Query: 142 CSNIILMDLSVNQLLGNIPPEF---GSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSL 198
            + ++ +DL  N+L G+IP +    GS S ++ +    N+LTG IP             L
Sbjct: 138 LNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIP-------------L 184

Query: 199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLD 258
            Y+           +L+ L FL L  N L+GT+PSS+ N +++    +  N + G +P  
Sbjct: 185 NYH----------CHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQ 234

Query: 259 FGFTLPNLQHFGIVFNNFT---------------------ELLLLNDNNFGGLIPECISN 297
               +P LQ   + +N+F                      + L L  N+ GG I   + +
Sbjct: 235 VISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRH 294

Query: 298 FSTTLASLFLDNNKIFGSIPPGIG------------------------KLVNLRRLYVWN 333
            S  L  + LD N+I GSIPP I                         KL  L R+Y+ N
Sbjct: 295 LSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSN 354

Query: 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC 393
           N L+G IP  +GD+  L +L +S N  SG+IP S GNL  L +L +  N L GT+P SL 
Sbjct: 355 NHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLG 414

Query: 394 QCKSLIGINFSKNNLSGTIPPQLFG-LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI 452
           +C +L  ++ S NNL+GTIP ++   L +L + L+LS NH +G +P+E+  +  +  +D+
Sbjct: 415 KCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDL 474

Query: 453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF 512
           S N LSG+IP  LGSC +LE L +  N F   +PSSL  L  L   D + N L+G IP  
Sbjct: 475 SSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPS 534

Query: 513 LAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNN 570
                 L+++N S+N L    V  +G     +  S +G+S LCG I  +Q   C K +
Sbjct: 535 FQQSSTLKHLNFSFNLLSGN-VSDKGSFSKLTIESFLGDSLLCGSIKGMQ--ACKKKH 589

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  241 bits (616), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 175/484 (36%), Positives = 252/484 (52%), Gaps = 45/484 (9%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLN-NNSIGGEIPATMS 140
           +L G I P I   S L+ L L +N  T +IP E+G+L  L  + +  N  I G+IP+ + 
Sbjct: 164 QLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIG 223

Query: 141 RCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
            CSN+ ++ L+   + GN+P   G L K++ L  +   ++G IPS LGN S ++ L L  
Sbjct: 224 DCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYE 283

Query: 201 NNIARSIPDTLGYL------------------------ENLSFLSLGGNMLSGTIPSSIF 236
           N+++ SIP  +G L                         NL  + L  N+LSG+IPSSI 
Sbjct: 284 NSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIG 343

Query: 237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL--LLLNDNNFGGLIPEC 294
             S +  F +  N+  G+IP                 +N + L  L L+ N   GLIP  
Sbjct: 344 RLSFLEEFMISDNKFSGSIP--------------TTISNCSSLVQLQLDKNQISGLIPSE 389

Query: 295 ISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
           +    T L   F  +N++ GSIPPG+    +L+ L +  N L+GTIPS +  L+NL  L 
Sbjct: 390 LGTL-TKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLL 448

Query: 355 MSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP 414
           +  N  SG IP  +GN   L++L +  N + G IPS +   K +  ++FS N L G +P 
Sbjct: 449 LISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPD 508

Query: 415 QLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKL 474
           ++   S L + +DLS N   GSLP  V +L  L VLD+S N  SG+IP SLG   SL KL
Sbjct: 509 EIGSCSELQM-IDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKL 567

Query: 475 LMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLE-NVNLSYNDLGARY 533
           ++  N F G IP+SL    GL + D   N LSGEIP  L   + LE  +NLS N L  + 
Sbjct: 568 ILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGK- 626

Query: 534 VPTE 537
           +P++
Sbjct: 627 IPSK 630

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  241 bits (616), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 250/484 (51%), Gaps = 40/484 (8%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
           + +G+ISP  G  S L    L  N     IPPE+G L  L  L L  N + G IP+ + R
Sbjct: 129 RFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGR 188

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
            + +  + +  N L G IP  FG+L+K+ +L  F+N+L+GSIPS +GNL ++  L L  N
Sbjct: 189 LTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRN 248

Query: 202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
           N+   IP + G L+N++ L++  N LSG IP  I N +++ T S+  N++ G IP     
Sbjct: 249 NLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIP----S 304

Query: 262 TLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIG 321
           TL N++   +        L L  N   G IP  +     ++  L +  NK+ G +P   G
Sbjct: 305 TLGNIKTLAV--------LHLYLNQLNGSIPPELGEME-SMIDLEISENKLTGPVPDSFG 355

Query: 322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
           KL  L  L++ +N+LSG IP  I +   L +L +  N F+G +P ++     L  L + +
Sbjct: 356 KLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDD 415

Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF-------- 433
           N  +G +P SL  CKSLI + F  N+ SG I  + FG+      +DLS N+F        
Sbjct: 416 NHFEGPVPKSLRDCKSLIRVRFKGNSFSGDI-SEAFGVYPTLNFIDLSNNNFHGQLSANW 474

Query: 434 ----------------TGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ 477
                           TG++P E+ N+  L  LD+S N ++GE+P S+ +   + KL + 
Sbjct: 475 EQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLN 534

Query: 478 GNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE 537
           GN+  G IPS +R L  L   D + N  S EIP  L     L  +NLS NDL  + +P E
Sbjct: 535 GNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLD-QTIP-E 592

Query: 538 GVIK 541
           G+ K
Sbjct: 593 GLTK 596

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  240 bits (613), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 263/516 (50%), Gaps = 54/516 (10%)

Query: 49  ALLEFKSKITVDPFGVLGSWNES-SHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNN-- 105
           AL+ +       P  V   WN S S  C+W           PYI   S   +L  + N  
Sbjct: 42  ALISWLHSSNSPPPSVFSGWNPSDSDPCQW-----------PYITCSSSDNKLVTEINVV 90

Query: 106 --NFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEF 163
                   PP I     L+ L ++N ++ G I + +  CS +I++DLS N L+G IP   
Sbjct: 91  SVQLALPFPPNISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSL 150

Query: 164 GSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLG 223
           G L  +++L    N LTG IP  LG+  S+  L +  N ++ ++P  LG +  L  +  G
Sbjct: 151 GKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAG 210

Query: 224 GN-MLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLL 282
           GN  LSG IP  I N  ++    +   ++ G++P+  G  L  LQ   +    ++ +L  
Sbjct: 211 GNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLG-QLSKLQSLSV----YSTML-- 263

Query: 283 NDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPS 342
                 G IP+ + N S  L +LFL +N + G++P  +GKL NL ++ +W N L G IP 
Sbjct: 264 -----SGEIPKELGNCS-ELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPE 317

Query: 343 AIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGIN 402
            IG +++L  + +S N FSG IP S GNL  L +L +S N + G+IPS L  C  L+   
Sbjct: 318 EIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQ 377

Query: 403 FSKNNLSGTIPPQLFGLSSLSI-----------------------SLDLSRNHFTGSLPI 439
              N +SG IPP++  L  L+I                       +LDLS+N+ TGSLP 
Sbjct: 378 IDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPA 437

Query: 440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499
            +  L+NL  L +  N +SG IP+ +G+CTSL +L +  N+  G IP  +  L+ LS  D
Sbjct: 438 GLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLD 497

Query: 500 FAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVP 535
            ++NNLSG +P  ++  + L+ +NLS N L   Y+P
Sbjct: 498 LSENNLSGPVPLEISNCRQLQMLNLSNNTLQG-YLP 532

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  239 bits (610), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 175/477 (36%), Positives = 242/477 (50%), Gaps = 20/477 (4%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
           +L+G I P +GN+S L  L L  N FT +IP EIG+L +++ L L  N + GEIP  +  
Sbjct: 246 RLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGN 305

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
             +   +D S NQL G IP EFG +  +K L  F N L G IP  LG L+ + +L L+ N
Sbjct: 306 LIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSIN 365

Query: 202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
            +  +IP  L +L  L  L L  N L G IP  I   S+ +   +  N + G IP  F  
Sbjct: 366 RLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFC- 424

Query: 262 TLPNLQHFGIVFNNFTELLLLN--DNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
                         F  L+LL+   N   G IP  +     +L  L L +N++ GS+P  
Sbjct: 425 -------------RFQTLILLSLGSNKLSGNIPRDLKT-CKSLTKLMLGDNQLTGSLPIE 470

Query: 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
           +  L NL  L +  N LSG I + +G L+NL  L ++ N F+G IP  +GNL  ++   +
Sbjct: 471 LFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNI 530

Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI 439
           S N L G IP  L  C ++  ++ S N  SG I  +L  L  L I L LS N  TG +P 
Sbjct: 531 SSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEI-LRLSDNRLTGEIPH 589

Query: 440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLE-KLLMQGNKFYGPIPSSLRSLRGLSVW 498
             G+L  L  L + GNLLS  IP+ LG  TSL+  L +  N   G IP SL +L+ L + 
Sbjct: 590 SFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEIL 649

Query: 499 DFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLC 555
               N LSGEIP  +     L   N+S N+L    VP   V +   +++  GN  LC
Sbjct: 650 YLNDNKLSGEIPASIGNLMSLLICNISNNNL-VGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
255585471	963	serine-threonine protein kinase, plant-t	0.900	0.543	0.469	1e-142
255581223	1015	receptor-kinase, putative [Ricinus commu	0.962	0.550	0.480	1e-141
224119022	1021	predicted protein [Populus trichocarpa]	0.951	0.541	0.465	1e-135
224119102	1007	predicted protein [Populus trichocarpa]	0.939	0.542	0.454	1e-135
255577438	1028	receptor-kinase, putative [Ricinus commu	0.963	0.544	0.448	1e-134
359486510	965	PREDICTED: probable LRR receptor-like se	0.862	0.519	0.513	1e-133
224113119	1065	predicted protein [Populus trichocarpa]	0.962	0.524	0.463	1e-132
147853780	1904	hypothetical protein VITISV_030954 [Viti	0.989	0.301	0.441	1e-132
359482058	1040	PREDICTED: probable LRR receptor-like se	0.924	0.516	0.453	1e-130
224116466	1008	predicted protein [Populus trichocarpa]	0.944	0.544	0.450	1e-126

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 302/643 (46%), Positives = 385/643 (59%), Gaps = 120/643 (18%)

Query: 19  VLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWH 78
           VL+ CFS           ++ ++GNETD +ALLEFKSKIT DPF VL SWNE+ HFC+W 
Sbjct: 21  VLILCFS--------STTSSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQ 72

Query: 79  ----------------ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLR 122
                            SLK++GSISPYIGNLSFLR L++ NN+F H IP +IG LRRL 
Sbjct: 73  GVTCGLLHRRVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLE 132

Query: 123 GLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGS 182
            L LNNNS+GG+IP  +SRCSN++ + L  N+L GN+P E G LS ++ L  F N LTGS
Sbjct: 133 ELRLNNNSVGGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLSIFGNKLTGS 192

Query: 183 IPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT 242
           IP SLGNLS + RLSL  N +   +P++LG+L NL+FLSL  N LSGTIPSS+FN SSI 
Sbjct: 193 IPHSLGNLSQLQRLSLAENRMVGEVPNSLGWLRNLTFLSLRSNRLSGTIPSSLFNLSSIR 252

Query: 243 T-------------------------FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT 277
                                     F++  N   G IP+       NL+   ++ NN T
Sbjct: 253 NLDIGENNFHGNLPSDIGFLLPNIRWFAISSNEFTGKIPVSLS-NATNLESLLLLQNNLT 311

Query: 278 ------------------------------------------ELLLLNDNNFGGLIPECI 295
                                                     E L +N NNFGG++P+ I
Sbjct: 312 GEVPSLAKLDRLRVFSLTSNNLGTGKADDLSFLHSLTNTTALEELGVNGNNFGGMLPDSI 371

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355
           +N STTL  L LDNN+I GSIP GI  LV+L    VWNN+LSG IP +IG LQNL +L +
Sbjct: 372 ANLSTTLRILLLDNNRIIGSIPSGIENLVSLEDFEVWNNQLSGFIPDSIGKLQNLVVLAL 431

Query: 356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ 415
           + N  SG+IP S+GNL  LIQL V +N L G IPS L +C++++G++ S+NN SG+IPP+
Sbjct: 432 NSNMLSGHIPSSLGNLTNLIQLLVEDNNLSGRIPSDLGRCQNMLGLSLSQNNFSGSIPPE 491

Query: 416 LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLL 475
           +  +SSLSI LDLS+N+ TG+LP+EVGNLK+L   D+SGN LSGEIP +LGSC SLE L 
Sbjct: 492 VISISSLSIYLDLSQNNLTGTLPMEVGNLKSLSEFDVSGNKLSGEIPRTLGSCISLEILN 551

Query: 476 MQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVP 535
           M GN F G IPSSL SLR L + D + N+LSG                          VP
Sbjct: 552 MAGNNFQGLIPSSLSSLRALQILDLSNNHLSG-------------------------MVP 586

Query: 536 TEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKISR 578
           ++G+ KN+SATSV GN+ LCGGIP+ Q P C   NS+  K +R
Sbjct: 587 SKGIFKNASATSVEGNNMLCGGIPEFQLPVC---NSARHKKNR 626

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis]

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 309/643 (48%), Positives = 400/643 (62%), Gaps = 84/643 (13%)

Query: 20  LVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWH- 78
           L F    + +  S    A  + GN TDR ALL+FK+KIT DP G +  WN+S+HFC+W+ 
Sbjct: 8   LPFQLYLKLLLSSFTLAACVINGNLTDRLALLDFKAKITDDPLGFMPLWNDSTHFCQWYG 67

Query: 79  ---------------ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRG 123
                           SL+LAGSISP+IGNLSFLR L+L NN+F+H IPPE+GRLRRL+ 
Sbjct: 68  VTCSRRHQRVAILNLRSLQLAGSISPHIGNLSFLRDLYLQNNSFSHGIPPEVGRLRRLQR 127

Query: 124 LTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSI 183
           L L+NNS+ G IP+ +S CS +  +  + NQL G IP E   L+K++ +    N  +GSI
Sbjct: 128 LRLSNNSLTGNIPSNISACSKLSEIYFAYNQLEGEIPEELSLLAKLQVISIQKNYFSGSI 187

Query: 184 PSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITT 243
           P S+GNLSS+  LS   N ++ +IPD +G L NL F+SL  N LSGTIP SI+N SSI T
Sbjct: 188 PPSIGNLSSLQVLSAPENYLSGNIPDAIGQLNNLIFISLSVNNLSGTIPPSIYNLSSINT 247

Query: 244 FSVVLNRMQGNIPLDFGFTLP--------------------------------------- 264
            ++V N++QG +P + G TLP                                       
Sbjct: 248 LNIVYNQIQGRLPSNLGITLPNLQVFAIARNDFIGSIPSSFSNASNLVWLIMSENKLTGR 307

Query: 265 --------NLQHFGIVFN----------------NFTEL--LLLNDNNFGGLIPECISNF 298
                   NLQ  G+ +N                N T L  L +++N F G++PE ISNF
Sbjct: 308 VPSLEQLHNLQILGLGYNYLGLEANDLDFVSSLVNCTNLWRLEIHNNKFHGVLPESISNF 367

Query: 299 STTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
           STT + L +  N I G IP  I  LVNL RL + NN+LSG IPS  G+L  L++L + GN
Sbjct: 368 STTFSQLVIAENNIAGRIPSSISNLVNLERLEMANNQLSGNIPSNFGNLNMLKVLHLFGN 427

Query: 359 RFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFG 418
           + SG IP S+GNL ML+ L   +N LQG IPSSL +C++L+ ++ +KNNLSG+IP Q+FG
Sbjct: 428 KLSGTIPSSLGNLTMLLTLSFYDNNLQGRIPSSLAECENLMVLDLAKNNLSGSIPLQVFG 487

Query: 419 LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478
           LSSLSI+LDLS NHFTG +P+EVGNLK+L  L IS N+LSG IP SLGSC  LE L +QG
Sbjct: 488 LSSLSIALDLSANHFTGVIPMEVGNLKDLEQLGISDNMLSGRIPDSLGSCIKLEVLALQG 547

Query: 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEG 538
           N F G +PSSL SLRGL V DF+ NNLSGEIP+FL  F LLE++NLSYN+   R VP EG
Sbjct: 548 NFFDGLVPSSLSSLRGLRVLDFSSNNLSGEIPEFLQSFDLLESLNLSYNNFEGR-VPVEG 606

Query: 539 VIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKISRGLK 581
           + +N+S T VMGN KLCGGIP+    +C  N  S +K++  LK
Sbjct: 607 IFRNASTTLVMGNDKLCGGIPEFHLAKC--NAKSPKKLTLLLK 647

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 298/640 (46%), Positives = 381/640 (59%), Gaps = 87/640 (13%)

Query: 21  VFCF-SFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWH- 78
            FCF SF F+        +    NETD  AL++FK+KI  DP G++ SWN + HFC+WH 
Sbjct: 5   AFCFRSFVFLLSLISVTCSDYT-NETDLLALIQFKNKIVDDPLGIMSSWNSTIHFCQWHG 63

Query: 79  ---------------ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRG 123
                          +SLKL+G+ISP+IGNLSFLR LHL NN+F H IPP++GRLR L+ 
Sbjct: 64  VSCGRRHQRVRVLALQSLKLSGTISPHIGNLSFLRELHLQNNSFFHEIPPQVGRLRSLQI 123

Query: 124 LTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSI 183
            +L+NNSI G+IP ++S CSN+I + +  N L G IP E GSL K+K+L   +N LTG+I
Sbjct: 124 FSLHNNSISGQIPPSISDCSNLISIKIEFNNLTGEIPMELGSLLKLKNLTLEVNGLTGTI 183

Query: 184 PSSLGNLSSIIRLSLTYNNIA-RSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT 242
           P SLGNLSS+  L L  N I   ++P TLG L+NL  L+L  N LSG IP SIFN SS+T
Sbjct: 184 PPSLGNLSSLEILRLEKNKILFGNVPSTLGKLKNLRILNLMDNRLSGVIPPSIFNLSSLT 243

Query: 243 TFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT-------------ELLLLNDNNFGG 289
              +  N   GN+P D G +LPNL+ F I  N FT             ELL ++ NN  G
Sbjct: 244 ALDIGFNLFHGNLPSDIGISLPNLEFFSIASNQFTGSIPVSISNASNIELLQVSLNNLTG 303

Query: 290 LIPECIS----NF------------------------STTLASLFLDNN----------- 310
            +P        NF                        +TTL  L +  N           
Sbjct: 304 EVPTLEKLHRLNFFTLFSNHLGSGQANDLSFLSSLTNATTLEYLSIKRNNFGGELPKQIS 363

Query: 311 --------------KIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356
                          I GSIP GI KLVNL+   V NNK+SG IPS+IG+LQNL  L + 
Sbjct: 364 NLSTMLGVISLPENNILGSIPAGIEKLVNLKVFDVGNNKISGIIPSSIGELQNLEGLVLD 423

Query: 357 GNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQL 416
            N  SG IP SVGNL  L+ L + +N L+G+IPSSL  CK L+ +    NNLSG IPP L
Sbjct: 424 YNNLSGRIPSSVGNLTKLMALYLGDNSLEGSIPSSLGNCKKLLVLTLCGNNLSGDIPPGL 483

Query: 417 FGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
           FG+ SL + +  S+NHF+GSLPIE+G L NL  LD+SGN+LSGEIP SLG C SLE L M
Sbjct: 484 FGIFSL-LYICFSKNHFSGSLPIEIGKLINLEFLDVSGNMLSGEIPSSLGGCISLEDLYM 542

Query: 477 QGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT 536
             N F+G IPS+L SLRG+  ++F+ NNLSG+IP+F  GF  LE ++LSYN+     +P 
Sbjct: 543 NSNFFHGSIPSALSSLRGVLQFNFSHNNLSGKIPEFFQGFNSLEMLDLSYNNFEG-MIPD 601

Query: 537 EGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKI 576
           EG+ KNS+A SV+GNS+LCGG  +L  PRC  +     K+
Sbjct: 602 EGIFKNSTAVSVIGNSQLCGGNTELGLPRCKVHQPKRLKL 641

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 291/640 (45%), Positives = 379/640 (59%), Gaps = 94/640 (14%)

Query: 10  PYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWN 69
           P F  HA ++L+ CF+         + A  +  NETDR ALL+FKSKIT DP G++  WN
Sbjct: 8   PVFCPHAFVLLLLCFT---------SSALSIGRNETDRLALLDFKSKITHDPLGIMRLWN 58

Query: 70  ESSHFCKWH----------------ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPP 113
            S HFC W                 +SLKL+GS+SPYIGNLSFLR L+L +N+F+H IP 
Sbjct: 59  SSIHFCHWFGVTCSQKHQRVAVLDLQSLKLSGSVSPYIGNLSFLRNLYLQHNSFSHEIPA 118

Query: 114 EIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR 173
           +IG L RL+ L L+NNS  GEIPA+MS   N++ + L  N+L G IP EFGS  K+ DL 
Sbjct: 119 QIGHLHRLQILALHNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLY 178

Query: 174 SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPS 233
              NNL G+IP SLGN+SS+  L L  NN+  ++P TL  L NL  LSL  N  SGTIP 
Sbjct: 179 IDDNNLVGTIPPSLGNISSLQELWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPP 238

Query: 234 SIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT-------------ELL 280
           S+ N SS+ TF V LN  QGN+P D G +LPNL+ F I  N FT             E+L
Sbjct: 239 SMLNLSSLRTFQVGLNHFQGNLPPDLGISLPNLEFFSIYSNQFTGSVPVSISNLSNLEML 298

Query: 281 LLNDNNFGGLIP-----------------------------ECISNFSTTLASLFLDNNK 311
            LN N   G +P                               ++N +T L  L +  N 
Sbjct: 299 ELNLNKLRGKMPSLEKLQRLLSITIASNNLGSGEANDLSFLSSLTN-ATNLEELIITQNN 357

Query: 312 IFGSIPP-------------------------GIGKLVNLRRLYVWNNKLSGTIPSAIGD 346
             G +PP                         GI  L++L    V NN LSG IPS IG 
Sbjct: 358 FQGQLPPQISNLSTTLEIMGLDSNLLFGSIPDGIENLISLNDFEVQNNHLSGIIPSTIGK 417

Query: 347 LQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKN 406
           LQNL +LG++ N FSG+IP S+GNL  LI L +++  +QG+IPSSL  C  L+ ++ S N
Sbjct: 418 LQNLEILGLALNNFSGDIPSSLGNLTNLIGLYLNDINVQGSIPSSLANCNKLLELDLSGN 477

Query: 407 NLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLG 466
            ++G+IPP +FGLSSLSI+LDLSRNH +GSLP EVGNL+NL +  ISGN++SG+IP SL 
Sbjct: 478 YITGSIPPGIFGLSSLSINLDLSRNHLSGSLPKEVGNLENLEIFAISGNMISGKIPSSLA 537

Query: 467 SCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSY 526
            C SL+ L +  N F G +PSSL +LRG+  ++F+ NNLSG+I +F   F+ LE ++LSY
Sbjct: 538 QCISLQFLYLDANFFEGSVPSSLSTLRGIQEFNFSHNNLSGKIHEFFQDFRSLEILDLSY 597

Query: 527 NDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRC 566
           N+     VP  G+ KN++ATSV+GNSKLCGG P  + P C
Sbjct: 598 NNFEG-MVPFRGIFKNATATSVIGNSKLCGGTPDFELPPC 636

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 289/645 (44%), Positives = 377/645 (58%), Gaps = 85/645 (13%)

Query: 19  VLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWH 78
           +L++    + +  S  + + R  GNETDR +LL FK+ IT DP  +L SWNES HFCKW 
Sbjct: 10  ILLWVLFLKMIQLSCSSLSGR--GNETDRLSLLAFKAHITDDPLHILSSWNESLHFCKWS 67

Query: 79  ----------------ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLR 122
                           ES +L+GS++ +IGNLSFLR L+L NN+ +H IP EIGRL RLR
Sbjct: 68  GITCGSRHQRVIEIDLESSRLSGSLTAFIGNLSFLRVLNLQNNSLSHYIPQEIGRLFRLR 127

Query: 123 GLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGS 182
            L L  NS  GEIP  +S CSN++ + L  N L G +P E  SLSK++     +N LTG 
Sbjct: 128 TLILRRNSFSGEIPVNISYCSNLLTLRLGRNNLTGKLPAELKSLSKLQMFEFEINYLTGE 187

Query: 183 IPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT 242
           I  S  NLSS+  +  T NN    IP+++G L++L   SLGG+  SG IP SIFN SS+T
Sbjct: 188 ISPSFSNLSSLEIIYGTRNNFHGEIPNSIGQLKSLQTFSLGGSNFSGVIPPSIFNLSSLT 247

Query: 243 TFSVVLNRMQGNIPLDFGFTLP------------------------NLQHFGIVFNNFT- 277
             SV +N++ GN+P D G +LP                        NL    +  NNFT 
Sbjct: 248 ILSVPINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPPTISNASNLVALDVSQNNFTG 307

Query: 278 -----------------------------------------ELLLLNDNNFGGLIPECIS 296
                                                    E+L + +NN GG++PE +S
Sbjct: 308 KVPSLARLHNLSYIGIHKNNLGNGEDDDLSFLYTLANNTNLEILAITENNLGGVLPEMLS 367

Query: 297 NFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356
           NFST L  +    NKI G IP  I  L+ L  L    N+L+G+IPS++G L+NL  L ++
Sbjct: 368 NFSTKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNELTGSIPSSLGKLKNLIKLYLN 427

Query: 357 GNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQL 416
            N  SG+IP S+GN+  L  + +  N L+G+IPSSL  C+ ++ ++ S+NNLSGTIP +L
Sbjct: 428 DNNISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNCQQMLLMDLSRNNLSGTIPKEL 487

Query: 417 FGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
             + SLSISLDLS N FTGSLP+EVG L NLG LD+S N LSGEIP SLGSCT LE L +
Sbjct: 488 ISIPSLSISLDLSENQFTGSLPMEVGGLVNLGYLDVSKNKLSGEIPKSLGSCTRLETLYL 547

Query: 477 QGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT 536
           QGN F G IP SL SLRG++  + + NNL+G+IP F A FK LE ++LSYND     VP 
Sbjct: 548 QGNAFQGTIPVSLSSLRGINDLNLSHNNLTGQIPNFFAEFKSLEKLDLSYNDFEGE-VPA 606

Query: 537 EGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKISRGLK 581
           EGV KN+SA S+ GN  LCGGIP++  PRCT N S   K S  L+
Sbjct: 607 EGVFKNASAFSISGNKNLCGGIPEINLPRCTLNKSMKPKTSHKLR 651

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486510|ref|XP_002271317.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like, partial [Vitis vinifera]

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 292/569 (51%), Positives = 365/569 (64%), Gaps = 68/569 (11%)

Query: 79  ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPAT 138
           +S KL GSISP+IGNLSFLR L L+ N F H IPPEIG LRRL+ L L+NNS+ GEIPA 
Sbjct: 17  QSQKLVGSISPHIGNLSFLRVLQLEENGFNHEIPPEIGHLRRLQMLFLSNNSLSGEIPAN 76

Query: 139 MSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSL 198
           +S CS ++ + +  N+L+G IP E GSLSK++ L    N+L+G IP S GNLSS+ RLS 
Sbjct: 77  LSSCSKLMYIYVGWNRLVGKIPAELGSLSKLQYLFIHANSLSGGIPRSFGNLSSLERLSA 136

Query: 199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLD 258
           T NNI  +IP +L  L  L+ ++L  N LSGTIP S+ N SS+  F+V  N + GN+P +
Sbjct: 137 TQNNIVGTIPASLFQLITLTHVALNANGLSGTIPPSLSNLSSLIFFAVSFNHLHGNLPSN 196

Query: 259 FGFTLP------------------------NLQHFGIVFNNFT----------------- 277
            G TLP                        NL++F    NN T                 
Sbjct: 197 LGITLPNLQDLSLSGNRFTGSIPVSLSNASNLEYFSCNGNNLTGKVPSLEKLQRLHFFSV 256

Query: 278 -------------------------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKI 312
                                    E+L LN NNFGG++PE I N+ST LA+L LD NKI
Sbjct: 257 TSNNLGNGEIEDLGFLSSLTNVSNLEVLALNVNNFGGVLPESIGNWSTKLATLLLDGNKI 316

Query: 313 FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLK 372
            GSIP GIG LV+L RL +W N+LSG+IP  IG LQNLR+L +  N+ SG +P S+GNL+
Sbjct: 317 GGSIPAGIGNLVSLERLEMWENQLSGSIPVDIGKLQNLRVLMLIKNKLSGILPSSLGNLE 376

Query: 373 MLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNH 432
            LIQL +  N+ QG IPSSL +C++L+ ++ S NNLSGTIPPQ+  LSSLSISLD+S N 
Sbjct: 377 NLIQLVLGRNYFQGKIPSSLGKCQNLLFLDLSLNNLSGTIPPQVVSLSSLSISLDISDNR 436

Query: 433 FTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSL 492
            TG+LPIEVGNLKNLGVLD+S N+LSG IP S+GSCTSLE L M+GN F G IPSS  SL
Sbjct: 437 LTGALPIEVGNLKNLGVLDVSNNMLSGGIPSSVGSCTSLEYLSMKGNFFQGSIPSSFSSL 496

Query: 493 RGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNS 552
           RG+ + D + NNLSG+IP+FL      + VNLSYND     +PTEGV KN SATS+MGNS
Sbjct: 497 RGIRILDLSHNNLSGKIPEFLQDIH-FQLVNLSYNDFEG-ILPTEGVFKNVSATSIMGNS 554

Query: 553 KLCGGIPKLQFPRCTKNNSSNQKISRGLK 581
           KLCGGIP+ Q P+C       + +S  LK
Sbjct: 555 KLCGGIPEFQLPKCNLQEPKKRGLSLALK 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113119|ref|XP_002316397.1| predicted protein [Populus trichocarpa] gi|222865437|gb|EEF02568.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 289/623 (46%), Positives = 380/623 (60%), Gaps = 64/623 (10%)

Query: 12  FVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNES 71
           F V     L+   SF F         +   GNETD  +LL  K +IT DP G L SWNES
Sbjct: 9   FTVWPLFFLIIQLSFSF---------SLAQGNETDIFSLLALKHQITDDPLGKLSSWNES 59

Query: 72  SHFCKWH----------------ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEI 115
           +HFC+W                 +S KL+GS+SP++GN+SFLR L+L+NN+F   IP E+
Sbjct: 60  THFCEWSGVTCGKKHQRVVQLDLQSCKLSGSLSPHVGNMSFLRTLNLENNSFGQNIPQEL 119

Query: 116 GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF 175
           G L RL+ L L NNS  GEIPA +SRCSN++ ++L  N L G +P EFGSLSK+K     
Sbjct: 120 GSLFRLQALVLTNNSFSGEIPANISRCSNLLSLELEGNNLTGKLPAEFGSLSKLKAFYFP 179

Query: 176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSI 235
            NNL G IP + GNLS I  +    NN+   IP ++G L+ L   S G N LSGTIP+SI
Sbjct: 180 RNNLFGEIPPAYGNLSHIEEIQGGQNNLQGDIPKSIGKLKRLKHFSFGTNNLSGTIPTSI 239

Query: 236 FNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIV----------------------- 272
           +N SS+T FSV  N++ G++P D G TLPNL+ F I                        
Sbjct: 240 YNLSSLTHFSVPANQLHGSLPRDLGLTLPNLEIFRIHTCQFSGLIPVTISNVSNLSLLDL 299

Query: 273 -FNNFT------------ELLLLNDNNFG--GLIPECISNFSTTLASLFLDNNKIFGSIP 317
             N+FT             LL L+ N+ G  G +PE +SNFS+ L  +   NN+I GSIP
Sbjct: 300 GLNSFTGQVPTLAGLHNLRLLALDFNDLGNGGALPEIVSNFSSKLRFMTFGNNQISGSIP 359

Query: 318 PGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377
             IG L++LR     +NKL+G IP++IG LQNL  L +SGN+ +GNIP S+GN   L+ L
Sbjct: 360 NEIGNLISLRGFGFESNKLTGIIPTSIGKLQNLGALALSGNKIAGNIPSSLGNSTALVLL 419

Query: 378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSL 437
            + +N LQG+IPSSL  C+ L+ ++ S+NN SG IPP++ G+ SLS+SLDLS+N   G L
Sbjct: 420 YLDKNNLQGSIPSSLGNCRDLLSLDLSQNNFSGPIPPEVIGIPSLSVSLDLSQNQLIGPL 479

Query: 438 PIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSV 497
           P EVG L NLG LD+S N LSGEIP SLGSC  LE LL++GN F G IP S+ SLR L  
Sbjct: 480 PSEVGMLVNLGYLDVSHNSLSGEIPGSLGSCVVLENLLLEGNLFKGSIPKSMSSLRALKY 539

Query: 498 WDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG 557
            + + NNL+G+IP+FLA F+ L++++LS+N L    +PT+G+  N+SA SV+GN+KLCGG
Sbjct: 540 LNISYNNLTGQIPRFLADFRFLQHLDLSFNHLEGE-MPTQGIFGNASAVSVLGNNKLCGG 598

Query: 558 IPKLQFPRCTKNNSSNQKISRGL 580
           I      RC    S   K S  L
Sbjct: 599 ISLFNLSRCMLKESKKPKTSTKL 621

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 292/662 (44%), Positives = 379/662 (57%), Gaps = 87/662 (13%)

Query: 3   TTTRVSLPYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPF 62
           T T +    F+ H+ LV  +   F   P S    +  + GNETDR ALL  K++IT DP 
Sbjct: 30  TNTLIPFRSFIFHSILV-PYTIIFLHSP-SPTTSSTILYGNETDRLALLAIKAQITQDPL 87

Query: 63  GVLGSWNESSHFCKW--------HE--------SLKLAGSISPYIGNLSFLRRLHLDNNN 106
           G+  SWN+S HFC W        H+        SL L GS+SP IGNL+FL  L+L+ NN
Sbjct: 88  GITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGSLSPSIGNLTFLTGLNLELNN 147

Query: 107 FTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSL 166
           F   IP E+GRL RLR L L NNS  GEIPA +SRCSN++   L  N L+G IP   GS 
Sbjct: 148 FHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLIGRIPSWLGSY 207

Query: 167 SKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNM 226
            K+  ++   NNLTG +P SLGNL+SI  LS   N++  SIP  LG L+ L F+ LG N 
Sbjct: 208 PKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQTLEFMGLGMNG 267

Query: 227 LSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQ------------------- 267
            SG IPSS++N SS+  FS+  N++ G++P D  FTLPNLQ                   
Sbjct: 268 FSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDFTGPLPSSLSN 327

Query: 268 -----HFGIVFNNFT-------------------------------------------EL 279
                 F I  +NFT                                           ++
Sbjct: 328 ASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLNSLMKCRALKV 387

Query: 280 LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGT 339
           L L+ + FGG++P  I+N ST L  L LDNN++ G+IPPGIG LVNL  L + NN  +G+
Sbjct: 388 LDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDLILANNDFTGS 447

Query: 340 IPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLI 399
           IP  IG+LQ L  + +S N+ SG+IP S+GN+  L  L +  N L G IPSS      L 
Sbjct: 448 IPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIPSSFGNLLYLQ 507

Query: 400 GINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459
            ++ S N+L+GTIP ++  L SL+ISL+L+RN  TG LP EV  LKNLG LD+S N LSG
Sbjct: 508 ELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGHLDVSENKLSG 567

Query: 460 EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLL 519
           EIP  LGSC +LE L M+GN F G IP S  SLRGL   D ++NNLSG+IP+FL     L
Sbjct: 568 EIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDLSRNNLSGQIPEFLQQLS-L 626

Query: 520 ENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKISRG 579
            N+NLS+N+   + +PT+GV  N+++TSV GN+KLCGGIP+L  P C        +  RG
Sbjct: 627 SNLNLSFNNFEGQ-LPTKGVFNNATSTSVAGNNKLCGGIPELHLPACPVTKPKTGESKRG 685

Query: 580 LK 581
           LK
Sbjct: 686 LK 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 282/622 (45%), Positives = 363/622 (58%), Gaps = 85/622 (13%)

Query: 43  NETDREALLEFKSKITVDPFGVLGSWNESSHFCKW--------HE--------SLKLAGS 86
           NETDR ALL  K++IT DP G+  SWN+S HFC W        H+        SL L GS
Sbjct: 37  NETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGS 96

Query: 87  ISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNII 146
           +SP IGNL+FL  L+L+ NNF   IP E+GRL RLR L L NNS  GEIPA +SRCSN++
Sbjct: 97  LSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLV 156

Query: 147 LMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARS 206
              L  N L+G IP   GS  K+  ++   NNLTG +P SLGNL+SI  LS   N++  S
Sbjct: 157 YFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGS 216

Query: 207 IPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNL 266
           IP  LG L+ L F+ LG N  SG IPSS++N SS+  FS+  N++ G++P D  FTLPNL
Sbjct: 217 IPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNL 276

Query: 267 Q------------------------HFGIVFNNFT------------------------- 277
           Q                         F I  +NFT                         
Sbjct: 277 QVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGK 336

Query: 278 ------------------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
                             ++L L+ + FGG++P  I+N ST L  L LDNN++ G+IPPG
Sbjct: 337 GEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPG 396

Query: 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
           IG LVNL  L + NN  +G+IP  IG+LQ L  + +S N+ SG+IP S+GN+  L  L +
Sbjct: 397 IGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHL 456

Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI 439
             N L G IPSS      L  ++ S N+L+GTIP ++  L SL+ISL+L+RN  TG LP 
Sbjct: 457 QNNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPS 516

Query: 440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499
           EV  LKNLG LD+S N LSGEIP  LGSC +LE L M+GN F G IP S  SLRGL   D
Sbjct: 517 EVRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLD 576

Query: 500 FAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIP 559
            ++NNLSG+IP+FL     L N+NLS+N+   + +PT+GV  N+++TSV GN+KLCGGIP
Sbjct: 577 LSRNNLSGQIPEFLQQLS-LSNLNLSFNNFEGQ-LPTKGVFNNATSTSVAGNNKLCGGIP 634

Query: 560 KLQFPRCTKNNSSNQKISRGLK 581
           +L  P C        +  RGLK
Sbjct: 635 ELHLPACPVTKPKTGESKRGLK 656

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 289/642 (45%), Positives = 377/642 (58%), Gaps = 93/642 (14%)

Query: 20  LVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKW-- 77
           +++  SFQ +  S     AR  G+E D+ +LL FK++I+ DP   L SWNES HFC+W  
Sbjct: 5   ILWFLSFQIIQHSFSFSLAR--GSEIDKLSLLAFKAQIS-DPTTKLSSWNESLHFCQWSG 61

Query: 78  ------HE--------SLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRG 123
                 H+        S +L GS+SP IGNLSFLR L L+NN+FT+AIP EIGRL RL+ 
Sbjct: 62  VKCGRQHQRVIELDLHSSQLVGSLSPSIGNLSFLRLLSLENNSFTNAIPQEIGRLVRLQT 121

Query: 124 LTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSI 183
           L L NNS  GEIP+ +S CSN++ ++L  N L GN+P   GSLSK++      NNL G I
Sbjct: 122 LILGNNSFSGEIPSNISHCSNLLKLNLEGNNLTGNLPAGLGSLSKLQVFSFRKNNLDGKI 181

Query: 184 PSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITT 243
           P S  NLSSII +  T NNI   IP ++G L+ L+F SLG N LSGTIP+S++N SS+  
Sbjct: 182 PLSFENLSSIIEIDGTLNNIQGGIPSSIGKLKTLNFFSLGSNNLSGTIPASLYNISSLIH 241

Query: 244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFN--------------NFTELLLLNDNNFGG 289
           FS+  N+  G +P + G TLPNLQ+ GI  N               FTE + L+ N F G
Sbjct: 242 FSLPYNQFHGTLPPNIGLTLPNLQYLGIHDNRLSGQLPATLINATKFTE-IYLSYNKFTG 300

Query: 290 LIP-----------------------------------------------------ECIS 296
            +P                                                     + IS
Sbjct: 301 KVPTLAIMPNLRILSMEENGLGKGEDDDLSFLYTLSNSSKLEDLYIDNNNFGGVLPDIIS 360

Query: 297 NFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356
           NFST L  +   +N+I G+IP GIG LV+L  L +  N L+G+IPS+IG LQNL    ++
Sbjct: 361 NFSTKLKQMAFGSNQIRGTIPDGIGNLVSLDTLGLEANHLTGSIPSSIGKLQNLADFFLN 420

Query: 357 GNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQL 416
            N+ SG+IP S+GN+  L+Q+   +N LQG+IP SL  C++L+ +  S+NNLSG IP ++
Sbjct: 421 ENKLSGSIPSSLGNITSLMQINFDQNNLQGSIPPSLGNCQNLLVLALSQNNLSGPIPKEV 480

Query: 417 FGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
             +SSLS+ L LS N  TGSLP EVG L  LG +DIS N LSGEIP SLGSC SLE L +
Sbjct: 481 LSISSLSMYLVLSENQLTGSLPFEVGKLVTLGYMDISKNRLSGEIPASLGSCESLEHLYL 540

Query: 477 QGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT 536
            GN   GPI  SLRSLR L   + + NNLSG+IPKFL   K L++++LS+NDL    VP 
Sbjct: 541 DGNFLQGPISESLRSLRALQDLNLSHNNLSGQIPKFLGDLK-LQSLDLSFNDLEGE-VPM 598

Query: 537 EGVIKNSSATSVMGNSKLCGGIPKLQFPRC----TKNNSSNQ 574
            GV +N+SA S+ GN  LCGGI +L  P C    TK  SS +
Sbjct: 599 HGVFENTSAVSIAGNKNLCGGILQLNLPTCRSKSTKPKSSTK 640

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.838	0.475	0.379	1.1e-78
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.841	0.474	0.368	5e-76
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.836	0.597	0.342	9.3e-75
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.851	0.490	0.352	5.9e-73
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.826	0.475	0.351	1.1e-71
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.822	0.466	0.349	4.6e-70
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.800	0.459	0.346	5.3e-69
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.833	0.430	0.317	4.9e-61
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.833	0.412	0.337	7.5e-61
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.798	0.406	0.332	2.2e-59

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 196/517 (37%), Positives = 277/517 (53%)

Query:    85 GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSRCSN 144
             G I   + N S L  L L +N+    +P E               ++ G+ PA++   ++
Sbjct:   143 GVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTS 202

Query:   145 IILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIA 204
             + ++D   NQ+ G IP +   L ++   R  +N   G  P  + NLSS+I LS+T N+ +
Sbjct:   203 LQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFS 262

Query:   205 RSI-PDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
              ++ PD    L NL  L +G N  +GTIP ++ N SS+    +  N + G IPL FG  L
Sbjct:   263 GTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFG-RL 321

Query:   264 PNLQHFGIVFN---NFT----------------EXXXXXXXXFGGLIPECISNFSTTLAS 304
              NL   G+  N   N++                +         GG +P  I+N ST L  
Sbjct:   322 QNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTE 381

Query:   305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI 364
             L L  N I GSIP GIG LV+L+ L +  N L+G +P ++G+L  LR + +  N  SG I
Sbjct:   382 LSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEI 441

Query:   365 PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXX 424
             P S+GN+  L  L +  N  +G+IPSSL  C  L+ +N   N L+G+IP +         
Sbjct:   442 PSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVV 501

Query:   425 XXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGP 484
                   N   G L  ++G LK L  LD+S N LSG+IP +L +C SLE LL+QGN F GP
Sbjct:   502 LNVSF-NLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGP 560

Query:   485 IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL-GARYVPTEGVIKNS 543
             IP  +R L GL   D ++NNLSG IP+++A F  L+N+NLS N+  GA  VPTEGV +N+
Sbjct:   561 IPD-IRGLTGLRFLDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGA--VPTEGVFRNT 617

Query:   544 SATSVMGNSKLCGGIPKLQFPRCT----KNNSSNQKI 576
             SA SV GN  LCGGIP LQ   C+    + +SS +KI
Sbjct:   618 SAMSVFGNINLCGGIPSLQLQPCSVELPRRHSSVRKI 654

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 189/513 (36%), Positives = 267/513 (52%)

Query:    83 LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSRC 142
             L G I   + N S L  + L +N+  H +P E+              ++ G  PA++   
Sbjct:   133 LEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNL 192

Query:   143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
             +++  +D + NQ+ G IP E   L+++   +  +N+ +G  P +L N+SS+  LSL  N+
Sbjct:   193 TSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNS 252

Query:   203 IARSIPDTLGYL-ENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
              + ++    GYL  NL  L LG N  +G IP ++ N SS+  F +  N + G+IPL FG 
Sbjct:   253 FSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFG- 311

Query:   262 TLPNLQHFGIVFN-----------------NFT--EXXXXXXXXFGGLIPECISNFSTTL 302
              L NL   GI  N                 N T  E         GG +P  I+N STTL
Sbjct:   312 KLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTL 371

Query:   303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG 362
              SLFL  N I G+IP  IG LV+L+ L +  N LSG +P + G L NL+++ +  N  SG
Sbjct:   372 TSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISG 431

Query:   363 NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXX 422
              IP   GN+  L +L ++ N   G IP SL +C+ L+ +    N L+GTIP Q       
Sbjct:   432 EIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIP-QEILQIPS 490

Query:   423 XXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY 482
                     N  TG  P EVG L+ L  L  S N LSG++P ++G C S+E L MQGN F 
Sbjct:   491 LAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFD 550

Query:   483 GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKN 542
             G IP   R L  L   DF+ NNLSG IP++LA    L N+NLS N    R VPT GV +N
Sbjct:   551 GAIPDISR-LVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGR-VPTTGVFRN 608

Query:   543 SSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQK 575
             ++A SV GN+ +CGG+ ++Q   C    S  ++
Sbjct:   609 ATAVSVFGNTNICGGVREMQLKPCIVQASPRKR 641

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 169/494 (34%), Positives = 255/494 (51%)

Query:    83 LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSRC 142
             L+G I   +GNL+ L  L L NN  + AIP  +              ++ G IP++  + 
Sbjct:   138 LSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQL 197

Query:   143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSS-LGNLSSIIRLSLTYN 201
               +  + L+ N L G IP    ++S +       N L+G++P++   NL S+  + + YN
Sbjct:   198 RRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYN 257

Query:   202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
                  IP ++G   N+S  ++G N  SG +P  I    ++    +     +     D+ F
Sbjct:   258 QFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKF 317

Query:   262 TLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIG 321
              +  L +     +N  E        FGG++P+ +SN S++L SL + +NKI GS+P  IG
Sbjct:   318 -MTALTNC----SNLQEVELGGCK-FGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIG 371

Query:   322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
              LVNL+ L + NN L+G++PS+   L+NLR L +  N+  G++PL++GNL  L  +EV  
Sbjct:   372 NLVNLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQF 431

Query:   382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
             N   GTIPS+L     L  IN   NN  G IP +               N+  GS+P E+
Sbjct:   432 NAFGGTIPSTLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEI 491

Query:   442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
             G LKN+       N LSGE P ++G C  L+ L +Q N   G IP +L  L+GL   D +
Sbjct:   492 GKLKNIVEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLS 551

Query:   502 QNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKL 561
              NNLSG+IP  L    LL ++NLS+N      VPT GV  N+S   + GN+ +CGGIP+L
Sbjct:   552 GNNLSGQIPMSLGDMPLLHSLNLSFNSFHGE-VPTNGVFANASEIYIQGNAHICGGIPEL 610

Query:   562 QFPRCTKNNSSNQK 575
               P C+  +   +K
Sbjct:   611 HLPTCSLKSRKKKK 624

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 183/519 (35%), Positives = 274/519 (52%)

Query:    83 LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSRC 142
             L G I   + N S L  L LD+N    ++P E+              ++ G++P ++   
Sbjct:   126 LRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNL 185

Query:   143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
             + +  + LS N L G IP +   L++I  L+   NN +G  P +L NLSS+  L + YN+
Sbjct:   186 TLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNH 245

Query:   203 IARSIPDTLGYL-ENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG- 260
              +  +   LG L  NL   ++GGN  +G+IP+++ N S++    +  N + G+IP  FG 
Sbjct:   246 FSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGN 304

Query:   261 -------FTLPNLQ--------HFGIVFNNFT--EXXXXXXXXFGGLIPECISNFSTTLA 303
                    F   N           F     N T  E         GG +P  I+N S  L 
Sbjct:   305 VPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLV 364

Query:   304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN 363
             +L L    I GSIP  IG L+NL++L +  N LSG +P+++G L NLR L +  NR SG 
Sbjct:   365 TLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGG 424

Query:   364 IPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXX 423
             IP  +GN+ ML  L++S N  +G +P+SL  C  L+ +    N L+GTIP +        
Sbjct:   425 IPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLL 484

Query:   424 XXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG 483
                    N   GSLP ++G L+NLG L +  N LSG++P +LG+C ++E L ++GN FYG
Sbjct:   485 RLDMSG-NSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYG 543

Query:   484 PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNS 543
              IP  L+ L G+   D + N+LSG IP++ A F  LE +NLS+N+L  + VP +G+ +N+
Sbjct:   544 DIPD-LKGLVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGK-VPVKGIFENA 601

Query:   544 SATSVMGNSKLCGGIPKLQFPRCTKNNSSN-QKISRGLK 581
             +  S++GN+ LCGGI   Q   C     S  +K S  LK
Sbjct:   602 TTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSSRLK 640

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 177/504 (35%), Positives = 261/504 (51%)

Query:    83 LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSRC 142
             L G I   + N S L  L L +NN    +P E+               + G+ P  +   
Sbjct:   126 LEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNL 185

Query:   143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
             +++I+++L  N L G IP +   LS++  L   MNN +G  P +  NLSS+  L L  N 
Sbjct:   186 TSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNG 245

Query:   203 IARSI-PDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
              + ++ PD    L N+  LSL GN L+G IP+++ N S++  F +  NRM G+I  +FG 
Sbjct:   246 FSGNLKPDFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFG- 304

Query:   262 TLPNLQHFGIVFNN----------FTEXXXX---------XXXXFGGLIPECISNFSTTL 302
              L NL +  +  N+          F +                  GG +P  I N ST L
Sbjct:   305 KLENLHYLELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTEL 364

Query:   303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG 362
               L L  N I+GSIP  IG L+ L+ L + +N L+G +P+++G+L  L  L +  NRFSG
Sbjct:   365 TVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSG 424

Query:   363 NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXX 422
              IP  +GNL  L++L +S N  +G +P SL  C  ++ +    N L+GTIP +       
Sbjct:   425 EIPSFIGNLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTL 484

Query:   423 XXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY 482
                     N  +GSLP ++G L+NL  L +  N LSG +P +LG C S+E + +Q N F 
Sbjct:   485 VHLNMES-NSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFD 543

Query:   483 GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKN 542
             G IP  ++ L G+   D + NNLSG I ++   F  LE +NLS N+   R VPTEG+ +N
Sbjct:   544 GTIPD-IKGLMGVKNVDLSNNNLSGSISEYFENFSKLEYLNLSDNNFEGR-VPTEGIFQN 601

Query:   543 SSATSVMGNSKLCGGIPKLQFPRC 566
             ++  SV GN  LCG I +L+   C
Sbjct:   602 ATLVSVFGNKNLCGSIKELKLKPC 625

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 712 (255.7 bits), Expect = 4.6e-70, P = 4.6e-70
 Identities = 170/487 (34%), Positives = 251/487 (51%)

Query:    82 KLAGSISPYIG-NLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMS 140
             +L G I   IG +L  L  L+L  N  +  IP  +               + G IP+++ 
Sbjct:   162 QLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLG 221

Query:   141 RCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR-LSLT 199
             + S+++ M+L  N L G IP    +LS ++      N L G IP++      ++  + + 
Sbjct:   222 QLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMG 281

Query:   200 YNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDF 259
              N     IP ++    +L+ + + GN+ SG I S      ++T   +  N  Q     D+
Sbjct:   282 TNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDW 341

Query:   260 GFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
             GF + +L +   +     +         GG++P   SN ST+L+ L L+ NKI GSIP  
Sbjct:   342 GF-ISDLTNCSKL-----QTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKD 395

Query:   320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
             IG L+ L+ LY+ NN   G++PS++G L+NL +L    N  SG+IPL++GNL  L  L +
Sbjct:   396 IGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLL 455

Query:   380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPI 439
               N   G IP +L    +L+ +  S NNLSG IP +              +N+  GS+P 
Sbjct:   456 GTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQ 515

Query:   440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499
             E+G+LKNL       N LSG+IP +LG C  L  L +Q N   G IPS+L  L+GL   D
Sbjct:   516 EIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLD 575

Query:   500 FAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIP 559
              + NNLSG+IP  LA   +L ++NLS+N      VPT G    +S  S+ GN+KLCGGIP
Sbjct:   576 LSSNNLSGQIPTSLADITMLHSLNLSFNSFVGE-VPTIGAFAAASGISIQGNAKLCGGIP 634

Query:   560 KLQFPRC 566
              L  PRC
Sbjct:   635 DLHLPRC 641

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 5.3e-69, P = 5.3e-69
 Identities = 166/479 (34%), Positives = 253/479 (52%)

Query:    91 IGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSRCSNIILMDL 150
             +G+L+ L  L L  NN    +P  +              +I GE+P  ++R S ++ + L
Sbjct:   158 LGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGL 217

Query:   151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR-LSLTYNNIARSIPD 209
             S+N+  G  PP   +LS ++DL  F +  +GS+    GNL   IR L+L  N++  +IP 
Sbjct:   218 SMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGENDLVGAIPT 277

Query:   210 TLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI--PLDFGFTLPNLQ 267
             TL  +  L    +  NM++G I  +     S+    +  N +       L+F  +L N  
Sbjct:   278 TLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDLEFIDSLTNCT 337

Query:   268 HFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLR 327
             H  ++   +T          GG +P  I+N ST L SL L  N  FGSIP  IG L+ L+
Sbjct:   338 HLQLLSVGYTR--------LGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQ 389

Query:   328 RLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT 387
             RL +  N L+G +P+++G L  L +L +  NR SG IP  +GNL  L  L +S N  +G 
Sbjct:   390 RLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGI 449

Query:   388 IPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNL 447
             +P SL +C  ++ +    N L+GTIP +               N  +GSLP ++G+L+NL
Sbjct:   450 VPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEG-NSLSGSLPNDIGSLQNL 508

Query:   448 GVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG 507
               L +  N  SG +P +LG+C ++E+L +QGN F G IP+ +R L G+   D + N+LSG
Sbjct:   509 VKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN-IRGLMGVRRVDLSNNDLSG 567

Query:   508 EIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRC 566
              IP++ A F  LE +NLS N+   + VP++G  +NS+   V GN  LCGGI  L+   C
Sbjct:   568 SIPEYFANFSKLEYLNLSINNFTGK-VPSKGNFQNSTIVFVFGNKNLCGGIKDLKLKPC 625

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 4.9e-61, P = 4.9e-61
 Identities = 159/501 (31%), Positives = 249/501 (49%)

Query:    82 KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSR 141
             + +G+I   IGN S L+ L+L  N    ++P  +              S+ G +      
Sbjct:   206 QFSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPN 265

Query:   142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
             C N++ +DLS N+  G +PP  G+ S +  L     NL+G+IPSSLG L ++  L+L+ N
Sbjct:   266 CKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSEN 325

Query:   202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
              ++ SIP  LG   +L+ L L  N L G IPS++     + +  +  NR  G IP++  +
Sbjct:   326 RLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEI-W 384

Query:   262 TLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIG 321
                +L    +  NN T          G L  E        +A+LF  NN  +G+IPPG+G
Sbjct:   385 KSQSLTQLLVYQNNLT----------GELPVEMTEMKKLKIATLF--NNSFYGAIPPGLG 432

Query:   322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
                +L  +    NKL+G IP  +   + LR+L +  N   G IP S+G+ K + +  + E
Sbjct:   433 VNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRE 492

Query:   382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
             N L G +P    Q  SL  ++F+ NN  G IP                RN FTG +P ++
Sbjct:   493 NNLSGLLPE-FSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLS-RNRFTGQIPPQL 550

Query:   442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
             GNL+NLG +++S NLL G +P  L +C SLE+  +  N   G +PS+  + +GL+    +
Sbjct:   551 GNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLS 610

Query:   502 QNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIP-K 560
             +N  SG IP+FL   K L  + ++ N  G     + G+I++      +  + L G IP K
Sbjct:   611 ENRFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIYDLDLSGNGLTGEIPAK 670

Query:   561 L-QFPRCTKNNSSNQKISRGL 580
             L    + T+ N SN  ++  L
Sbjct:   671 LGDLIKLTRLNISNNNLTGSL 691

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.5e-61, P = 7.5e-61
 Identities = 172/510 (33%), Positives = 260/510 (50%)

Query:    82 KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSR 141
             KL  SI   +  L+ L  L L  N+    I  EI              +  GE P +++ 
Sbjct:   299 KLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITN 358

Query:   142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
               N+ ++ +  N + G +P + G L+ +++L +  N LTG IPSS+ N + +  L L++N
Sbjct:   359 LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHN 418

Query:   202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI-PLDFG 260
              +   IP   G + NL+F+S+G N  +G IP  IFN S++ T SV  N + G + PL  G
Sbjct:   419 QMTGEIPRGFGRM-NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL-IG 476

Query:   261 FTLPNLQHFGIVFNNFT-------------EXXXXXXXXFGGLIPECISNFSTTLASLFL 307
               L  L+   + +N+ T                      F G IP  +SN  T L  L +
Sbjct:   477 -KLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNL-TLLQGLRM 534

Query:   308 DNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLS 367
              +N + G IP  +  +  L  L + NNK SG IP+    L++L  L + GN+F+G+IP S
Sbjct:   535 YSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPAS 594

Query:   368 VGNLKMLIQLEVSENFLQGTIPSSL-CQCKSL-IGINFSKNNLSGTIPPQXXXXXXXXXX 425
             + +L +L   ++S+N L GTIP  L    K++ + +NFS N L+GTIP +          
Sbjct:   595 LKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEI 654

Query:   426 XXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL-GSCTSLEKLLMQGNKFYGP 484
                  N F+GS+P  +   KN+  LD S N LSG IP  +      +  L +  N F G 
Sbjct:   655 DLS-NNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGE 713

Query:   485 IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSS 544
             IP S  ++  L   D + NNL+GEIP+ LA    L+++ L+ N+L   +VP  GV KN +
Sbjct:   714 IPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKG-HVPESGVFKNIN 772

Query:   545 ATSVMGNSKLCGGIPKLQFPRCT-KNNSSN 573
             A+ +MGN+ LCG    L+ P CT K  SS+
Sbjct:   773 ASDLMGNTDLCGSKKPLK-P-CTIKQKSSH 800

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 160/481 (33%), Positives = 240/481 (49%)

Query:    83 LAGSISPYIGNLSFLRRLHLDNNN-FTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMSR 141
             L GSI   +G LS L  + +  N   +  IP EI              S+ G +P+++ +
Sbjct:   189 LTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGK 248

Query:   142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
                +  + +    + G IP + G+ S++ DL  + N+L+GSIP  +G L+ + +L L  N
Sbjct:   249 LKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQN 308

Query:   202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
             ++   IP+ +G   NL  + L  N+LSG+IPSSI   S +  F +  N+  G+IP     
Sbjct:   309 SLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPT---- 364

Query:   262 TLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIG 321
             T+ N     +V     +          GLIP  +    T L   F  +N++ GSIPPG+ 
Sbjct:   365 TISNCS--SLVQLQLDKNQ------ISGLIPSELGTL-TKLTLFFAWSNQLEGSIPPGLA 415

Query:   322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
                +L+ L +  N L+GTIPS +  L+NL  L +  N  SG IP  +GN   L++L +  
Sbjct:   416 DCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGF 475

Query:   382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
             N + G IPS +   K +  ++FS N L G +P +               N   GSLP  V
Sbjct:   476 NRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLS-NNSLEGSLPNPV 534

Query:   442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
              +L  L VLD+S N  SG+IP SLG   SL KL++  N F G IP+SL    GL + D  
Sbjct:   535 SSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLG 594

Query:   502 QNNLSGEIPKFLAGFKLLE-NVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPK 560
              N LSGEIP  L   + LE  +NLS N L  + +P++    N  +   + ++ L G +  
Sbjct:   595 SNELSGEIPSELGDIENLEIALNLSSNRLTGK-IPSKIASLNKLSILDLSHNMLEGDLAP 653

Query:   561 L 561
             L
Sbjct:   654 L 654

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01680026 hypothetical protein (1007 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	581
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-76
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-23
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	9e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  259 bits (663), Expect = 5e-76
 Identities = 180/511 (35%), Positives = 256/511 (50%), Gaps = 36/511 (7%)

Query: 48  EALLEFKSKITVDPFGVLGSWNESSHFCKWH----------ESLKL-----AGSISPYIG 92
           E LL FKS I  DP   L +WN S+  C W            S+ L     +G IS  I 
Sbjct: 32  ELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIF 90

Query: 93  NLSFLRRLHLDNNNFTHAIPPEIGRL-RRLRGLTLNNNSIGGEIPATMSRCSNIILMDLS 151
            L +++ ++L NN  +  IP +I      LR L L+NN+  G IP       N+  +DLS
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLS 148

Query: 152 VNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTL 211
            N L G IP + GS S +K L    N L G IP+SL NL+S+  L+L  N +   IP  L
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208

Query: 212 GYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGI 271
           G +++L ++ LG N LSG IP  I   +S+    +V N + G IP   G  L NLQ+  +
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFL 267

Query: 272 VFNNFTE-------------LLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP 318
             N  +               L L+DN+  G IPE +      L  L L +N   G IP 
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPV 326

Query: 319 GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE 378
            +  L  L+ L +W+NK SG IP  +G   NL +L +S N  +G IP  + +   L +L 
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP 438
           +  N L+G IP SL  C+SL  +    N+ SG +P +   L  L   LD+S N+  G + 
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQGRIN 445

Query: 439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVW 498
               ++ +L +L ++ N   G +P S GS   LE L +  N+F G +P  L SL  L   
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 499 DFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
             ++N LSGEIP  L+  K L +++LS+N L
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  217 bits (553), Expect = 9e-61
 Identities = 161/487 (33%), Positives = 237/487 (48%), Gaps = 64/487 (13%)

Query: 80  SLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATM 139
           S +L G I   +G +  L+ ++L  NN +  IP EIG L  L  L               
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL--------------- 241

Query: 140 SRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLT 199
                    DL  N L G IP   G+L  ++ L  + N L+G IP S+ +L  +I L L+
Sbjct: 242 ---------DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 200 YNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDF 259
            N+++  IP+ +  L+NL  L L  N  +G IP ++ +   +    +  N+  G IP + 
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 260 GFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
           G      +H     NN T +L L+ NN  G IPE + +                      
Sbjct: 353 G------KH-----NNLT-VLDLSTNNLTGEIPEGLCSSG-------------------- 380

Query: 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
                NL +L +++N L G IP ++G  ++LR + +  N FSG +P     L ++  L++
Sbjct: 381 -----NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI 439
           S N LQG I S      SL  ++ ++N   G + P  FG   L  +LDLSRN F+G++P 
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PDSFGSKRLE-NLDLSRNQFSGAVPR 493

Query: 440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499
           ++G+L  L  L +S N LSGEIP  L SC  L  L +  N+  G IP+S   +  LS  D
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 500 FAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIP 559
            +QN LSGEIPK L   + L  VN+S+N L    +P+ G     +A++V GN  LCGG  
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS-LPSTGAFLAINASAVAGNIDLCGGDT 612

Query: 560 KLQFPRC 566
               P C
Sbjct: 613 TSGLPPC 619

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  161 bits (409), Expect = 7e-42
 Identities = 111/316 (35%), Positives = 160/316 (50%), Gaps = 15/316 (4%)

Query: 217 LSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNF 276
           +  + L G  +SG I S+IF    I T ++  N++ G IP D   T  +L++        
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY-------- 122

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKL 336
              L L++NNF G IP         L +L L NN + G IP  IG   +L+ L +  N L
Sbjct: 123 ---LNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 337 SGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCK 396
            G IP+++ +L +L  L ++ N+  G IP  +G +K L  + +  N L G IP  +    
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 397 SLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL 456
           SL  ++   NNL+G IP  L  L +L   L L +N  +G +P  + +L+ L  LD+S N 
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQY-LFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 457 LSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF 516
           LSGEIP  +    +LE L +  N F G IP +L SL  L V     N  SGEIPK L   
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 517 KLLENVNLSYNDLGAR 532
             L  ++LS N+L   
Sbjct: 356 NNLTVLDLSTNNLTGE 371

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (258), Expect = 7e-23
 Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 370 NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLS 429
           N   ++ +++S   + G I S++ +   +  IN S N LSG IP  +F  SS    L+LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 430 RNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSL 489
            N+FTGS+P   G++ NL  LD+S N+LSGEIP  +GS +SL+ L + GN   G IP+SL
Sbjct: 127 NNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 490 RSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE 537
            +L  L     A N L G+IP+ L   K L+ + L YN+L    +P E
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYE 231

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 37/87 (42%), Positives = 53/87 (60%)

Query: 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSL 392
           N  L G IP+ I  L++L+ + +SGN   GNIP S+G++  L  L++S N   G+IP SL
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 393 CQCKSLIGINFSKNNLSGTIPPQLFGL 419
            Q  SL  +N + N+LSG +P  L G 
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 24/116 (20%)

Query: 123 GLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGS 182
           GL L+N  + G IP  +S+  ++  ++LS N + GNIPP                     
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP--------------------- 460

Query: 183 IPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
              SLG+++S+  L L+YN+   SIP++LG L +L  L+L GN LSG +P+++  R
Sbjct: 461 ---SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 34/93 (36%), Positives = 56/93 (60%)

Query: 96  FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQL 155
           F+  L LDN      IP +I +LR L+ + L+ NSI G IP ++   +++ ++DLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 156 LGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLG 188
            G+IP   G L+ ++ L    N+L+G +P++LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 400 GINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459
           G+      L G IP  +  L  L  S++LS N   G++P  +G++ +L VLD+S N  +G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQ-SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 460 EIPISLGSCTSLEKLLMQGNKFYGPIPSSL--RSLRGLSVWDFAQN 503
            IP SLG  TSL  L + GN   G +P++L  R L   S ++F  N
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS-FNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 34/88 (38%), Positives = 54/88 (61%)

Query: 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI 364
           L LDN  + G IP  I KL +L+ + +  N + G IP ++G + +L +L +S N F+G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 365 PLSVGNLKMLIQLEVSENFLQGTIPSSL 392
           P S+G L  L  L ++ N L G +P++L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK 335
           F + L L++    G IP  IS     L S+ L  N I G+IPP +G + +L  L +  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 336 LSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVG 369
            +G+IP ++G L +LR+L ++GN  SG +P ++G
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 26/151 (17%)

Query: 426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPI 485
           L L      G +P ++  L++L  +++SGN + G IP SLGS TSLE L +  N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 486 PSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSA 545
           P SL  L  L + +   N+LSG +P  L G +LL   + ++ D                 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGG-RLLHRASFNFTD----------------- 524

Query: 546 TSVMGNSKLCGGIPKLQFPRCTKNNSSNQKI 576
                N+ LC GIP L    C  + S   KI
Sbjct: 525 -----NAGLC-GIPGL--RACGPHLSVGAKI 547

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 25/114 (21%)

Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTI 412
           LG+      G IP  +  L+ L  + +S N ++G IP SL                 G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-----------------GSI 465

Query: 413 PPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLG 466
                  +SL + LDLS N F GS+P  +G L +L +L+++GN LSG +P +LG
Sbjct: 466 -------TSLEV-LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 89/277 (32%), Positives = 132/277 (47%), Gaps = 23/277 (8%)

Query: 199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLD 258
             +N    +P +L  L +L  LS  G   S     ++ N   + +  + LNR++ NI   
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGI-SSLDGSENLLNLLPLPSLDLNLNRLRSNISEL 112

Query: 259 FGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP 318
              T  NL    +  NN T+            IP  I    + L  L L +NKI  S+P 
Sbjct: 113 LELT--NLTSLDLDNNNITD------------IPPLIGLLKSNLKELDLSDNKI-ESLPS 157

Query: 319 GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE 378
            +  L NL+ L +  N LS  +P  + +L NL  L +SGN+ S ++P  +  L  L +L+
Sbjct: 158 PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD 215

Query: 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP 438
           +S N +   + SSL   K+L G+  S NN    +P  +  LS+L  +LDLS N    S  
Sbjct: 216 LSNNSII-ELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLE-TLDLSNN--QISSI 270

Query: 439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLL 475
             +G+L NL  LD+SGN LS  +P+       LE LL
Sbjct: 271 SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 43 NETDREALLEFKSKITVDPFGVLGSWNES-SHFCKW 77
             DR+ALL FKS +  DP G L SWN S S  C W
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSW 36

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query: 83  LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATM 139
           + G+I P +G+++ L  L L  N+F  +IP  +G+L  LR L LN NS+ G +PA +
Sbjct: 454 IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEIGRL-RRLRGLTLNNNSIGGEIPATMSRCSNIILMD 149
           +  L+ L  L LDNNN T  IPP IG L   L+ L L++N I   +P+ +    N+  +D
Sbjct: 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLD 169

Query: 150 LSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD 209
           LS N L  ++P    +LS + +L     N    +P  +  LS++  L L+ N+I   +  
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNL-DLSGNKISDLPPEIELLSALEELDLSNNSI-IELLS 226

Query: 210 TLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHF 269
           +L  L+NLS L L  N     +P SI N S++ T  +  N++     L    +L NL+  
Sbjct: 227 SLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQISSISSL---GSLTNLREL 282

Query: 270 GIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGS 315
            +  N+ +    L       L+ E + N   TL +L L  N I  +
Sbjct: 283 DLSGNSLSN--ALPLIALLLLLLELLLNLLLTLKALELKLNSILLN 326

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 73/264 (27%), Positives = 114/264 (43%), Gaps = 22/264 (8%)

Query: 105 NNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFG 164
           +N    +P  + RL  L  L+ +  S        +     +  +DL++N+L  NI     
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGISSLDGSE-NLLNLLPLPSLDLNLNRLRSNISELL- 113

Query: 165 SLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGG 224
            L+ +  L    NN    IP  +G L S ++     +N   S+P  L  L NL  L L  
Sbjct: 114 ELTNLTSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172

Query: 225 NMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLND 284
           N LS  +P  + N S++    +  N++  ++P      L  L+   +  N+  E      
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLP-PEIELLSALEELDLSNNSIIE------ 223

Query: 285 NNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAI 344
                 +   +SN       L L NNK+   +P  IG L NL  L + NN++S    S++
Sbjct: 224 ------LLSSLSNLKNLSG-LELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSL 273

Query: 345 GDLQNLRMLGMSGNRFSGNIPLSV 368
           G L NLR L +SGN  S  +PL  
Sbjct: 274 GSLTNLRELDLSGNSLSNALPLIA 297

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 83  LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRC 142
           L G I   I  L  L+ ++L  N+    IPP +G +  L  L L+ NS  G IP ++ + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 143 SNIILMDLSVNQLLGNIPPEFGSL 166
           +++ +++L+ N L G +P   G  
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 25/82 (30%), Positives = 45/82 (54%)

Query: 179 LTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
           L G IP+ +  L  +  ++L+ N+I  +IP +LG + +L  L L  N  +G+IP S+   
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 239 SSITTFSVVLNRMQGNIPLDFG 260
           +S+   ++  N + G +P   G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 5/126 (3%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
            +   + NLS L  L L  N  +  +PPEI  L  L  L L+NNSI  E+ +++S   N+
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNL 234

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
             ++LS N+L  ++P   G+LS ++ L   ++N   S  SSLG+L+++  L L+ N+++ 
Sbjct: 235 SGLELSNNKLE-DLPESIGNLSNLETLD--LSNNQISSISSLGSLTNLRELDLSGNSLSN 291

Query: 206 SIPDTL 211
           ++P   
Sbjct: 292 ALPLIA 297

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 40/241 (16%)

Query: 118 LRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR-SFM 176
           L  LR + L  +    EIP  +S  +N+  + LS    L  +P     L+K++DL  S  
Sbjct: 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
            NL   +P+ + NL S+ RL+L+  +  +S PD      N+S+L L    +    PS   
Sbjct: 692 ENLE-ILPTGI-NLKSLYRLNLSGCSRLKSFPDIS---TNISWLDLDETAIE-EFPS--- 742

Query: 237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECIS 296
                            N+ L+      NL    +      +L          L P  ++
Sbjct: 743 -----------------NLRLE------NLDELILCEMKSEKLW----ERVQPLTP-LMT 774

Query: 297 NFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356
             S +L  LFL +      +P  I  L  L  L + N     T+P+ I +L++L  L +S
Sbjct: 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833

Query: 357 G 357
           G
Sbjct: 834 G 834

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 302 LASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
           L SL L NN++   IP G    L NL+ L +  N L+   P A   L +LR L +SGN  
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	581
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03150	623	hypothetical protein; Provisional	99.5
PLN03150	623	hypothetical protein; Provisional	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
PRK15386	426	type III secretion protein GogB; Provisional	98.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.99
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.14
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.1
KOG4341	483	consensus F-box protein containing LRR [General fu	97.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.94
KOG4341	483	consensus F-box protein containing LRR [General fu	96.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.03
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.78
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.44
KOG4308	478	consensus LRR-containing protein [Function unknown	95.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.27
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.63
KOG4308	478	consensus LRR-containing protein [Function unknown	94.1
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.59
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.65
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.33
smart00370	26	LRR Leucine-rich repeats, outliers.	87.35
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.35
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.26
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.0
smart00370	26	LRR Leucine-rich repeats, outliers.	85.0
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.0

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-65  Score=591.02  Aligned_cols=545  Identities=37%  Similarity=0.594  Sum_probs=392.0

Q ss_pred             CCcccccchhHHHHHHHHHHHHHHHhccccccccccccccCCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCC
Q 035922            1 MGTTTRVSLPYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHES   80 (581)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c~w~~~   80 (581)
                      ||.-+++.-||++++..++. +  .+             ....++|+.||++||+++. +|.+.+.+|+..++||.|.|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~--~~-------------~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv   63 (968)
T PLN00113          1 MAKKGPQHCPYLIFMLFFLF-L--NF-------------SMLHAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGI   63 (968)
T ss_pred             CCCCCCCCCChHHHHHHHHH-H--Hc-------------cCCCHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcce
Confidence            77888888888653322111 1  11             1113578999999999994 787888999888899999872


Q ss_pred             ---------------CCcccccCccccCCCCCcEEECCCCCCCCCCchhcc-CCCCCCEEEccCCCCCCCCcccCcCCCC
Q 035922           81 ---------------LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIG-RLRRLRGLTLNNNSIGGEIPATMSRCSN  144 (581)
Q Consensus        81 ---------------~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  144 (581)
                                     ..+.|.+++.+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+++.+|.  +.+++
T Consensus        64 ~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~  141 (968)
T PLN00113         64 TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN  141 (968)
T ss_pred             ecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence                           234567788889999999999999999988887654 888888888888888776664  34666


Q ss_pred             CCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCC
Q 035922          145 IILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGG  224 (581)
Q Consensus       145 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  224 (581)
                      |++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY  221 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence            77777777776666666666677777777777766666666666666777777766666666666666666666666666


Q ss_pred             ccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcc-------------eeEeccCCcCcccC
Q 035922          225 NMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT-------------ELLLLNDNNFGGLI  291 (581)
Q Consensus       225 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-------------~~l~l~~n~l~~~~  291 (581)
                      |++++.+|..+.++++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.             +.+++++|.+.+.+
T Consensus       222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence            6666666666666666666666666666666655544 666666666665543             34555556555555


Q ss_pred             chhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCc------------
Q 035922          292 PECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR------------  359 (581)
Q Consensus       292 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~------------  359 (581)
                      |..+..+. +|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.            
T Consensus       301 p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~  379 (968)
T PLN00113        301 PELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS  379 (968)
T ss_pred             ChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence            55555543 55555555555555555555555555555555555555555555555555555555554            


Q ss_pred             ------------ccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhccc-------
Q 035922          360 ------------FSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLS-------  420 (581)
Q Consensus       360 ------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~-------  420 (581)
                                  +.+.+|..+..+++|+.|++++|.+++.+|..+..++.|+.|++++|.+.+.+|..+..++       
T Consensus       380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  459 (968)
T PLN00113        380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL  459 (968)
T ss_pred             CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence                        4445555555666777777777777666666666666666666666666555554333333       


Q ss_pred             ----------------CCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCccc
Q 035922          421 ----------------SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGP  484 (581)
Q Consensus       421 ----------------~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  484 (581)
                                      .+ +.|++++|++++.+|..+.++++|++|++++|++.+.+|..+..+++|+.|+|++|.+++.
T Consensus       460 ~~n~~~~~~p~~~~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  538 (968)
T PLN00113        460 ARNKFFGGLPDSFGSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ  538 (968)
T ss_pred             cCceeeeecCcccccccc-eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence                            34 5566666666677777778888999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCCCCCCC
Q 035922          485 IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFP  564 (581)
Q Consensus       485 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~~~~~~  564 (581)
                      +|..+..+++|+.||+++|++++.+|..+.++++|+++++++|++.+. +|..+.+.++...++.|||++||..+....+
T Consensus       539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~-~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~  617 (968)
T PLN00113        539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS-LPSTGAFLAINASAVAGNIDLCGGDTTSGLP  617 (968)
T ss_pred             CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee-CCCcchhcccChhhhcCCccccCCccccCCC
Confidence            999999999999999999999999999999999999999999999998 9999999999999999999999976655567


Q ss_pred             CCCC
Q 035922          565 RCTK  568 (581)
Q Consensus       565 ~c~~  568 (581)
                      +|..
T Consensus       618 ~c~~  621 (968)
T PLN00113        618 PCKR  621 (968)
T ss_pred             CCcc
Confidence            8864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-54  Score=498.56  Aligned_cols=475  Identities=33%  Similarity=0.557  Sum_probs=406.8

Q ss_pred             ccccC---CCCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCc-CCCCCCEEEc
Q 035922           75 CKWHE---SLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMS-RCSNIILMDL  150 (581)
Q Consensus        75 c~w~~---~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L  150 (581)
                      -.|..   .+.+.|....   +..+++.|+|++|.+++.+|..+..+++|++|+|++|.+.+.+|..+. .+++|++|++
T Consensus        49 ~~w~~~~~~c~w~gv~c~---~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L  125 (968)
T PLN00113         49 SNWNSSADVCLWQGITCN---NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL  125 (968)
T ss_pred             CCCCCCCCCCcCcceecC---CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEEC
Confidence            45753   3445555443   245899999999999999999999999999999999999988888765 9999999999


Q ss_pred             cCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCC
Q 035922          151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGT  230 (581)
Q Consensus       151 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  230 (581)
                      ++|.+++.+|.  +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus       126 s~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  203 (968)
T PLN00113        126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ  203 (968)
T ss_pred             cCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc
Confidence            99999988885  5689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcc-------------eeEeccCCcCcccCchhhhh
Q 035922          231 IPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT-------------ELLLLNDNNFGGLIPECISN  297 (581)
Q Consensus       231 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-------------~~l~l~~n~l~~~~p~~~~~  297 (581)
                      +|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.             +.+++++|.+.+.+|..+.+
T Consensus       204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  282 (968)
T PLN00113        204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS  282 (968)
T ss_pred             CChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence            9999999999999999999999999998876 999999999999765             67999999999999999998


Q ss_pred             cccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEE
Q 035922          298 FSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL  377 (581)
Q Consensus       298 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  377 (581)
                      +. +|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus       283 l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L  361 (968)
T PLN00113        283 LQ-KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL  361 (968)
T ss_pred             cc-CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence            86 99999999999999999999999999999999999999999999999999999999999999899888888888888


Q ss_pred             eecCcccCCCCccccc------------------------CCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcc
Q 035922          378 EVSENFLQGTIPSSLC------------------------QCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF  433 (581)
Q Consensus       378 ~L~~n~l~~~~p~~l~------------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l  433 (581)
                      ++++|.+.+.+|.++.                        .+++|+.|++++|++++.+|..+..++.+ +.|++++|.+
T Consensus       362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l  440 (968)
T PLN00113        362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-YFLDISNNNL  440 (968)
T ss_pred             ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-CEEECcCCcc
Confidence            8888887766665544                        44555666666666666666666666666 6666666666


Q ss_pred             cccCCccccCCC-----------------------CCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCccccc
Q 035922          434 TGSLPIEVGNLK-----------------------NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLR  490 (581)
Q Consensus       434 ~~~~p~~l~~l~-----------------------~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  490 (581)
                      ++.+|..+..++                       +|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|+.+.
T Consensus       441 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  520 (968)
T PLN00113        441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS  520 (968)
T ss_pred             cCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHc
Confidence            665554443333                       345555666666667777778888899999999999989999999


Q ss_pred             CCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccCCC
Q 035922          491 SLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGGIP  559 (581)
Q Consensus       491 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~~~  559 (581)
                      .+++|+.|++++|.+++.+|..+..+++|++|++++|++++. +|. ...+.+|+.+++++|+. .|.+|
T Consensus       521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~l~ls~N~l-~~~~p  588 (968)
T PLN00113        521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE-IPKNLGNVESLVQVNISHNHL-HGSLP  588 (968)
T ss_pred             CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc-CChhHhcCcccCEEeccCCcc-eeeCC
Confidence            999999999999999999999999999999999999999998 886 46678899999999984 44444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.7e-43  Score=331.54  Aligned_cols=439  Identities=27%  Similarity=0.440  Sum_probs=325.8

Q ss_pred             ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922           86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS  165 (581)
Q Consensus        86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  165 (581)
                      .+.+.+.++..+.+|++++|.+. ..|.+++.+..++.++.++|+++ .+|+.++.+.+|+.+++++|.+. .+|+.++.
T Consensus        59 ~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~  135 (565)
T KOG0472|consen   59 VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR  135 (565)
T ss_pred             hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH
Confidence            34456667777777777777776 56667777777777777777777 77777777777777777777776 55667777


Q ss_pred             CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEE
Q 035922          166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFS  245 (581)
Q Consensus       166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  245 (581)
                      +..|..++..+|+++ ..|+.+.++.+|..+++.+|++....|+.+. ++.|++|++..|.++ .+|+.++.+.+|..++
T Consensus       136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~Ly  212 (565)
T KOG0472|consen  136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLY  212 (565)
T ss_pred             Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHH
Confidence            777777777777777 6677777777777777777777655444444 777777777777766 7777777777777777


Q ss_pred             cccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCC
Q 035922          246 VVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN  325 (581)
Q Consensus       246 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~  325 (581)
                      +.+|++. .+| +|.. +..|.++.+..|.+.            .+|....+.-+++..||+.+|+++ .+|..+..+++
T Consensus       213 L~~Nki~-~lP-ef~g-cs~L~Elh~g~N~i~------------~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs  276 (565)
T KOG0472|consen  213 LRRNKIR-FLP-EFPG-CSLLKELHVGENQIE------------MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS  276 (565)
T ss_pred             hhhcccc-cCC-CCCc-cHHHHHHHhcccHHH------------hhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence            7777765 333 3322 555555555544432            456666543348888888888887 67777888888


Q ss_pred             CCEEEeecCcCcccccccccCCCCCCeEeccCCccccc--------------------------------------CCcc
Q 035922          326 LRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN--------------------------------------IPLS  367 (581)
Q Consensus       326 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--------------------------------------~~~~  367 (581)
                      |++||+++|.++ .+|..++++ +|+.|.+.+|.+...                                      .+..
T Consensus       277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~  354 (565)
T KOG0472|consen  277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES  354 (565)
T ss_pred             hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence            888888888888 567778888 888888888876410                                      0001


Q ss_pred             C---CCCCCCcEEeecCcccCCCCcccccCCCC---CcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccc
Q 035922          368 V---GNLKMLIQLEVSENFLQGTIPSSLCQCKS---LIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV  441 (581)
Q Consensus       368 ~---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l  441 (581)
                      |   ....+.+.|++++-+++ .+|........   ...++++.|++. .+|..+..+..+.+.+++++|.++ -+|..+
T Consensus       355 ~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l  431 (565)
T KOG0472|consen  355 FPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLEL  431 (565)
T ss_pred             ccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence            1   12345666777777766 44544433333   677888888887 788888777777667778888777 677788


Q ss_pred             cCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCE
Q 035922          442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLEN  521 (581)
Q Consensus       442 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  521 (581)
                      ..+++|..|+|++|.+. .+|..++.+-.|+.|+++.|+|. .+|+.+..+..++.+-.++|++....|+.+.++..|.+
T Consensus       432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            89999999999999888 88999999999999999999997 88998888888999888889998777777999999999


Q ss_pred             EECcCCCCCCCCCCCccccCCcCcccccCCCCC
Q 035922          522 VNLSYNDLGARYVPTEGVIKNSSATSVMGNSKL  554 (581)
Q Consensus       522 L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~l  554 (581)
                      ||+.+|.+... .|..+.+.+++.+.+.|||+-
T Consensus       510 LDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence            99999999885 666799999999999999965

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-38  Score=314.86  Aligned_cols=205  Identities=23%  Similarity=0.216  Sum_probs=123.1

Q ss_pred             hhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCC
Q 035922          319 GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSL  398 (581)
Q Consensus       319 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  398 (581)
                      .|.++++|+.|.|..|.+.......|..+.++++|+|+.|+++..-..++.++++|+.|++++|.+...-++.+..+++|
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence            35556666666666666665555556666666666666666665555556666666666666666666556666666666


Q ss_pred             cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCc---cccCCCCCcEEE
Q 035922          399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPI---SLGSCTSLEKLL  475 (581)
Q Consensus       399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~  475 (581)
                      ++|+|++|+++.--+..+..+..| +.|+|++|+++..-...|..+++|++|||++|.++..+..   .|..+++|+.|.
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            666666666664444455555555 5666666666544444555566666666666666544432   345566666666


Q ss_pred             CCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECc
Q 035922          476 MQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLS  525 (581)
Q Consensus       476 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  525 (581)
                      +.+|++..+.-.+|..++.|+.|||.+|.|..+-|+.|..+ .|+.|-+.
T Consensus       399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            66666654333466666666666666666665556666555 55555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-38  Score=312.07  Aligned_cols=365  Identities=22%  Similarity=0.231  Sum_probs=261.6

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN  177 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  177 (581)
                      +.|++++|.++..-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            67888888888777778888888888888888887 77766666667888888888887666677777888888888888


Q ss_pred             cccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCcccc-CCCCccEEEcccccCcccCC
Q 035922          178 NLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF-NRSSITTFSVVLNRMQGNIP  256 (581)
Q Consensus       178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~  256 (581)
                      .|+..--..+..-.++++|+|++|.|+......|..+.+|.+|.|++|+++ .+|...+ +++.|+.|++..|++.-.--
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehh
Confidence            887433345666677888888888887777777777778888888888887 5554433 36666666666665542111


Q ss_pred             hhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcC
Q 035922          257 LDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKL  336 (581)
Q Consensus       257 ~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  336 (581)
                      .. ++.+                                    ++|+.|.+..|.+...-...|..+.++++|+|+.|++
T Consensus       239 lt-FqgL------------------------------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  239 LT-FQGL------------------------------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             hh-hcCc------------------------------------hhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            11 1112                                    3566666666666655455566677777777777777


Q ss_pred             cccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcch
Q 035922          337 SGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQL  416 (581)
Q Consensus       337 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~  416 (581)
                      +..-..++.++++|+.|++|+|.|...-+..+..+++|+.|+|++|+++...+..|..+..|++|+|++|.+...--..|
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af  361 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF  361 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence            76666667777777777777777776666677777777777777777777777777777777777777777764334455


Q ss_pred             hcccCCcceeEcCCCcccccCC---ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCC
Q 035922          417 FGLSSLSISLDLSRNHFTGSLP---IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLR  493 (581)
Q Consensus       417 ~~l~~L~~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  493 (581)
                      ..+.+| +.|||++|.++..+.   ..|..+++|+.|++.+|++...--.+|..++.|+.|+|.+|.+..+-|++|..+ 
T Consensus       362 ~~lssL-~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-  439 (873)
T KOG4194|consen  362 VGLSSL-HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-  439 (873)
T ss_pred             HHhhhh-hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-
Confidence            566667 777888887765543   346678888888888888874444578888888888888888887788888888 


Q ss_pred             CCCEEECCCC
Q 035922          494 GLSVWDFAQN  503 (581)
Q Consensus       494 ~L~~L~ls~n  503 (581)
                      .|+.|-+..-
T Consensus       440 ~Lk~Lv~nSs  449 (873)
T KOG4194|consen  440 ELKELVMNSS  449 (873)
T ss_pred             hhhhhhhccc
Confidence            7887776543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1e-40  Score=316.21  Aligned_cols=437  Identities=27%  Similarity=0.401  Sum_probs=365.4

Q ss_pred             ccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCccc
Q 035922           84 AGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEF  163 (581)
Q Consensus        84 ~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  163 (581)
                      ...+|++++.+..++.++.++|.+. .+|+.++.+.+|+.++.++|.+. .+|+.++.+..|+.++..+|+++ ..|+++
T Consensus        80 l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~  156 (565)
T KOG0472|consen   80 LSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDM  156 (565)
T ss_pred             hhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHH
Confidence            3568899999999999999999998 78999999999999999999999 88899999999999999999998 778899


Q ss_pred             CCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccE
Q 035922          164 GSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITT  243 (581)
Q Consensus       164 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  243 (581)
                      .++.+|..+++.+|++. ..|+..-+++.|+++|...|-+ +.+|+.++.+.+|..|++.+|++. .+| .|..++.|++
T Consensus       157 ~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~E  232 (565)
T KOG0472|consen  157 VNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKE  232 (565)
T ss_pred             HHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHH
Confidence            99999999999999999 5555555599999999999988 578889999999999999999998 777 8899999999


Q ss_pred             EEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCC
Q 035922          244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL  323 (581)
Q Consensus       244 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l  323 (581)
                      ++++.|.+. .+|.+....++++..||+..|++.            ..|+.++.+. +|.+||+++|.++ .+|..++++
T Consensus       233 lh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk------------e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  233 LHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK------------EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             HHhcccHHH-hhHHHHhcccccceeeeccccccc------------cCchHHHHhh-hhhhhcccCCccc-cCCcccccc
Confidence            999999887 788888877999999888888876            3578877775 8999999999998 566778988


Q ss_pred             CCCCEEEeecCcCccc-------------------------------------cc----ccccCCCCCCeEeccCCcccc
Q 035922          324 VNLRRLYVWNNKLSGT-------------------------------------IP----SAIGDLQNLRMLGMSGNRFSG  362 (581)
Q Consensus       324 ~~L~~L~L~~n~l~~~-------------------------------------~~----~~l~~l~~L~~L~Ls~n~l~~  362 (581)
                       .|+.|-+.+|.+...                                     .+    .......+.+.|++++-+++ 
T Consensus       298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-  375 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-  375 (565)
T ss_pred             -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-
Confidence             899999988876310                                     00    01123456788999998888 


Q ss_pred             cCCccCCCCC---CCcEEeecCcccCCCCcccccCCCCCcE-EECCCCcccccCCcchhcccCCcceeEcCCCcccccCC
Q 035922          363 NIPLSVGNLK---MLIQLEVSENFLQGTIPSSLCQCKSLIG-INFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP  438 (581)
Q Consensus       363 ~~~~~~~~l~---~L~~L~L~~n~l~~~~p~~l~~l~~L~~-L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p  438 (581)
                      .+|.....-.   -...++++.|++. ++|..+..++.+.+ +.+++|.+. -+|..+..++++ ..|++++|-+. .+|
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kL-t~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKL-TFLDLSNNLLN-DLP  451 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcc-eeeecccchhh-hcc
Confidence            5565543333   3788999999998 77887777766654 455555554 889999999999 89999999998 799


Q ss_pred             ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCC
Q 035922          439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL  518 (581)
Q Consensus       439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  518 (581)
                      ..++.+..|+.||++.|+|. .+|.++..+..++.+-.++|++...-|+.+.+|.+|..||+.+|.+. .+|..++++.+
T Consensus       452 ~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn  529 (565)
T KOG0472|consen  452 EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN  529 (565)
T ss_pred             hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence            99999999999999999998 99999988889999999999998766777999999999999999998 78888999999


Q ss_pred             CCEEECcCCCCCCCCCCCccc-cCCcCcccccCCC
Q 035922          519 LENVNLSYNDLGARYVPTEGV-IKNSSATSVMGNS  552 (581)
Q Consensus       519 L~~L~ls~N~l~~~~ip~~~~-~~~l~~l~~~gN~  552 (581)
                      |++|++++|++..  .|.... ..+...+++.+++
T Consensus       530 L~hLeL~gNpfr~--Pr~~iLmkgT~aiL~ylrdr  562 (565)
T KOG0472|consen  530 LRHLELDGNPFRQ--PRHQILMKGTAAILSYLRDR  562 (565)
T ss_pred             eeEEEecCCccCC--CHHHHhccChHHHHHHhccc
Confidence            9999999999983  232222 2234445555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=9e-38  Score=324.47  Aligned_cols=432  Identities=28%  Similarity=0.373  Sum_probs=300.9

Q ss_pred             CCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECC
Q 035922           96 FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF  175 (581)
Q Consensus        96 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  175 (581)
                      +|+.||+++|.+. .+|..+..+++|+.|+++.|.|. ..|.+.+++.+|++|.|.+|.+. ..|..+..+.+|++|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            3777888877776 67777777788888888888777 66777777888888888877776 677777778888888888


Q ss_pred             CCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccC
Q 035922          176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI  255 (581)
Q Consensus       176 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  255 (581)
                      .|++. .+|..+..+..++.+..++|.....    ++... ++.+++..|.+.+.++..+.+++.  .+++.+|.+. ..
T Consensus       123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~  193 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL  193 (1081)
T ss_pred             hhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh
Confidence            88777 6777777777777777777722222    22222 677777777777778777777766  7888888776 22


Q ss_pred             ChhhhcCCCCCceeeccccCcc---------eeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCC
Q 035922          256 PLDFGFTLPNLQHFGIVFNNFT---------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNL  326 (581)
Q Consensus       256 ~~~~~~~l~~L~~L~l~~n~~~---------~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  326 (581)
                      ...   .+++|+.+....|.+.         ..++.+.|.++...+.-.   +.+|+++++++|+++ .+|.|++.+.+|
T Consensus       194 dls---~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~---p~nl~~~dis~n~l~-~lp~wi~~~~nl  266 (1081)
T KOG0618|consen  194 DLS---NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPV---PLNLQYLDISHNNLS-NLPEWIGACANL  266 (1081)
T ss_pred             hhh---hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccc---cccceeeecchhhhh-cchHHHHhcccc
Confidence            211   2566666666666554         335555555553322222   137788888888877 456778888888


Q ss_pred             CEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccc-ccCCC-CCcEEECC
Q 035922          327 RRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS-LCQCK-SLIGINFS  404 (581)
Q Consensus       327 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~-~L~~L~ls  404 (581)
                      +.++..+|+++ .+|..+...++|+.|.+.+|.+. .+|....+++.|++|+|..|.+.. .|.. +.... +|..++.+
T Consensus       267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s  343 (1081)
T KOG0618|consen  267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVS  343 (1081)
T ss_pred             eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhh
Confidence            88888888876 66777777778888888888776 666677777888888888887773 3332 22222 25555556


Q ss_pred             CCcccccCCcc-hhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc
Q 035922          405 KNNLSGTIPPQ-LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG  483 (581)
Q Consensus       405 ~n~l~~~~p~~-~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  483 (581)
                      .|++. ..|.. =..+..+ +.|.+.+|.++......+.++.+|+.|+|++|++.......+.+++.|++|+||||+++ 
T Consensus       344 ~n~l~-~lp~~~e~~~~~L-q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-  420 (1081)
T KOG0618|consen  344 SNKLS-TLPSYEENNHAAL-QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-  420 (1081)
T ss_pred             hcccc-ccccccchhhHHH-HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence            66655 33321 1223444 67888888888776667778888888888888887444456778888888888888887 


Q ss_pred             cCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCC
Q 035922          484 PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKL  554 (581)
Q Consensus       484 ~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~l  554 (581)
                      .+|+.+..+..|++|..-.|++. ..| .+..++.|+.+|+|.|+++-..+|...--++|+.++++||+++
T Consensus       421 ~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  421 TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            67788888888888888888887 566 5778888888888888887664554433377888888888753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=2.3e-36  Score=300.79  Aligned_cols=368  Identities=29%  Similarity=0.424  Sum_probs=288.1

Q ss_pred             cCCCCCcEEECCCCCCC-CCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCC
Q 035922           92 GNLSFLRRLHLDNNNFT-HAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIK  170 (581)
Q Consensus        92 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (581)
                      +-++.+|-.|+++|.++ +.+|.....+++++.|.|.+.++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            34567788889999888 568888888888888888888887 78888888888888888888887 4455677788888


Q ss_pred             EEECCCCccc-ccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCcccc-CCCCccEEEccc
Q 035922          171 DLRSFMNNLT-GSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF-NRSSITTFSVVL  248 (581)
Q Consensus       171 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~  248 (581)
                      .+.+.+|++. .-+|..+..+..|..|||++|++. ..|..+..-+++-.|++++|+|. .+|..++ ++          
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL----------  149 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL----------  149 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhh----------
Confidence            8888888765 346777777788888888888773 56666766677777777777776 4443321 11          


Q ss_pred             ccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCE
Q 035922          249 NRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRR  328 (581)
Q Consensus       249 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  328 (581)
                                                                         +.|-.|||++|++. .+|+.+..+..|++
T Consensus       150 ---------------------------------------------------tDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  150 ---------------------------------------------------TDLLFLDLSNNRLE-MLPPQIRRLSMLQT  177 (1255)
T ss_pred             ---------------------------------------------------HhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence                                                               25566677777766 56677788888888


Q ss_pred             EEeecCcCcccccccccCCCCCCeEeccCCccc-ccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCc
Q 035922          329 LYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS-GNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN  407 (581)
Q Consensus       329 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~  407 (581)
                      |+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+..+++|+.|+||+|+
T Consensus       178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence            888888765333334456677888888876533 357888888888888888888888 778888888889999999998


Q ss_pred             ccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcc-ccCccccCCCCCcEEECCCCcCcccCc
Q 035922          408 LSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG-EIPISLGSCTSLEKLLMQGNKFYGPIP  486 (581)
Q Consensus       408 l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p  486 (581)
                      ++ .+.........+ +.|++|+|+++ .+|.++..++.|+.|.+.+|+++. .+|..++.+..|+.+..++|.+. ..|
T Consensus       257 it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP  332 (1255)
T KOG0444|consen  257 IT-ELNMTEGEWENL-ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP  332 (1255)
T ss_pred             ee-eeeccHHHHhhh-hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence            88 666666667777 88899999998 788899999999999999998763 67888999999999999888886 789


Q ss_pred             ccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922          487 SSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       487 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      +.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+-.-
T Consensus       333 EglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  333 EGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence            99999999999999999987 678888889999999999886544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=1.2e-35  Score=295.56  Aligned_cols=364  Identities=26%  Similarity=0.347  Sum_probs=294.9

Q ss_pred             CCCEEEccCCcCc-ccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccccccc
Q 035922          144 NIILMDLSVNQLL-GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL  222 (581)
Q Consensus       144 ~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l  222 (581)
                      -.+-.|+++|.++ +..|.....|++++-|.|...++. .+|+.++.+.+|++|.+++|++.. +-..++.++.|+.+.+
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIV   85 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhh
Confidence            3444555555555 355666666666666666666666 667777777777777777777643 3345677778888888


Q ss_pred             CCccCCC-CCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccC
Q 035922          223 GGNMLSG-TIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTT  301 (581)
Q Consensus       223 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~  301 (581)
                      ..|++.. .+|..++.+..|+.|++++|++. .+|.                                    .+... .+
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~------------------------------------~LE~A-Kn  127 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPT------------------------------------NLEYA-KN  127 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhh-hcch------------------------------------hhhhh-cC
Confidence            8887753 57888888888888888887776 3333                                    23222 37


Q ss_pred             CcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecC
Q 035922          302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE  381 (581)
Q Consensus       302 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  381 (581)
                      +-.|+|++|+|..+..+.+.+++.|-+|||++|++. .+|..+..+..|+.|+|++|.+...--..+..+++|++|.+++
T Consensus       128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             cEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence            889999999998555556788999999999999998 7888899999999999999988754334455678899999998


Q ss_pred             ccc-CCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          382 NFL-QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       382 n~l-~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      .+- ...+|.++..+.+|..+|+|.|.+. .+|+.+..+.+| +.|+||+|+|+ ++....+.-.+|++|++|.|+++ .
T Consensus       207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L-rrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~  282 (1255)
T KOG0444|consen  207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL-RRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-V  282 (1255)
T ss_pred             ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh-heeccCcCcee-eeeccHHHHhhhhhhccccchhc-c
Confidence            653 3458999999999999999999998 999999999999 89999999999 56556667789999999999999 8


Q ss_pred             cCccccCCCCCcEEECCCCcCc-ccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCc-c
Q 035922          461 IPISLGSCTSLEKLLMQGNKFY-GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE-G  538 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~-~  538 (581)
                      +|.++..++.|+.|.+.+|++. .-||..++.+.+|+++..++|.+. .+|+.+..+..|+.|.|++|++..  +|+. .
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT--LPeaIH  359 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT--LPEAIH  359 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee--chhhhh
Confidence            9999999999999999999986 458999999999999999999997 899999999999999999999986  6764 6


Q ss_pred             ccCCcCcccccCCCCCc
Q 035922          539 VIKNSSATSVMGNSKLC  555 (581)
Q Consensus       539 ~~~~l~~l~~~gN~~lc  555 (581)
                      .++.+..+++..||.+-
T Consensus       360 lL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  360 LLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hcCCcceeeccCCcCcc
Confidence            67889999999999886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1e-34  Score=301.89  Aligned_cols=450  Identities=24%  Similarity=0.309  Sum_probs=364.7

Q ss_pred             ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922           86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS  165 (581)
Q Consensus        86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  165 (581)
                      .||..+..-..++.|+++.|.+-...-+.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|....+
T Consensus        12 ~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~   89 (1081)
T KOG0618|consen   12 LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN   89 (1081)
T ss_pred             ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence            46666666666899999999876443445556666999999999998 88999999999999999999998 67888999


Q ss_pred             CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEE
Q 035922          166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFS  245 (581)
Q Consensus       166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  245 (581)
                      +.+|+++.|.+|.+. .+|.++..+++|++|++++|.+ +.+|..+..+..+..+..++|.....++.    .. ++.++
T Consensus        90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~  162 (1081)
T KOG0618|consen   90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLD  162 (1081)
T ss_pred             hhcchhheeccchhh-cCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhh
Confidence            999999999999998 8999999999999999999999 67888899999999999999933222222    22 88888


Q ss_pred             cccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchh------hhhcccCCcEEEccCCcccccCchh
Q 035922          246 VVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPEC------ISNFSTTLASLFLDNNKIFGSIPPG  319 (581)
Q Consensus       246 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~------~~~~~~~L~~L~L~~n~l~~~~p~~  319 (581)
                      +..|.+.+.++.+... +..  .+++.+|.+. .++++.+..-..+-..      +....++++.|+.++|.++...+. 
T Consensus       163 l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-  237 (1081)
T KOG0618|consen  163 LRLNVLGGSFLIDIYN-LTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-  237 (1081)
T ss_pred             hhhhhcccchhcchhh-hhe--eeecccchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-
Confidence            9999888888877654 444  6889988887 6666655433322211      111125888999999988743322 


Q ss_pred             hcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCc
Q 035922          320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLI  399 (581)
Q Consensus       320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  399 (581)
                       ....+|+++++++|+++ .+|++++.+.+|+.++..+|.++ .+|..+....+|+.|.+.+|.+. .+|......++|+
T Consensus       238 -p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~  313 (1081)
T KOG0618|consen  238 -PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLR  313 (1081)
T ss_pred             -cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceee
Confidence             23468999999999999 57799999999999999999996 78888888999999999999998 6677788899999


Q ss_pred             EEECCCCcccccCCcchhcccCC-cceeEcCCCcccccCC-ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECC
Q 035922          400 GINFSKNNLSGTIPPQLFGLSSL-SISLDLSRNHFTGSLP-IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ  477 (581)
Q Consensus       400 ~L~ls~n~l~~~~p~~~~~l~~L-~~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  477 (581)
                      +|+|..|++. .+|+.+...... +..++.+.|.+. ..| ..=..++.|+.|++.+|+++...-+.+.+.+.|+.|+|+
T Consensus       314 tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  314 TLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS  391 (1081)
T ss_pred             eeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence            9999999998 777755443322 256777778877 344 222346789999999999998888889999999999999


Q ss_pred             CCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922          478 GNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       478 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      +|++.......+.++..|+.|+||+|.+. .+|..+..++.|++|...+|++..  .|+..+++.++.+|++-|..-=+.
T Consensus       392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~--fPe~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS--FPELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee--chhhhhcCcceEEecccchhhhhh
Confidence            99998444457789999999999999998 688999999999999999999986  788899999999999999744344


Q ss_pred             C
Q 035922          558 I  558 (581)
Q Consensus       558 ~  558 (581)
                      +
T Consensus       469 l  469 (1081)
T KOG0618|consen  469 L  469 (1081)
T ss_pred             h
Confidence            3

>PLN03210 Resistant to P

Probab=99.94  E-value=8.1e-25  Score=253.18  Aligned_cols=340  Identities=21%  Similarity=0.247  Sum_probs=200.1

Q ss_pred             chhccCCCCCCEEEccCCC------CCCCCcccCcCCC-CCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCC
Q 035922          112 PPEIGRLRRLRGLTLNNNS------IGGEIPATMSRCS-NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIP  184 (581)
Q Consensus       112 p~~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  184 (581)
                      +..|.++++|++|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++. .+|
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence            4467778888888876543      2234566666654 5888888887776 556565 4678888888888776 567


Q ss_pred             ccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCC
Q 035922          185 SSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP  264 (581)
Q Consensus       185 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  264 (581)
                      ..+..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+  .++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~  704 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK  704 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence            7777788888888887765555663 6777888888888877666778888888888888888776555666544  356


Q ss_pred             CCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc-------
Q 035922          265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS-------  337 (581)
Q Consensus       265 ~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-------  337 (581)
                      +|+.|++++|...           +.+|+.    ..+|+.|++++|.+. .+|..+ .+++|++|++.++...       
T Consensus       705 sL~~L~Lsgc~~L-----------~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~  767 (1153)
T PLN03210        705 SLYRLNLSGCSRL-----------KSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQ  767 (1153)
T ss_pred             CCCEEeCCCCCCc-----------cccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhcccccc
Confidence            6666655554321           122221    136677777777665 445433 4566666666653321       


Q ss_pred             ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchh
Q 035922          338 GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF  417 (581)
Q Consensus       338 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~  417 (581)
                      ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|++|++++|.....+|... 
T Consensus       768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~-  845 (1153)
T PLN03210        768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS-  845 (1153)
T ss_pred             ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc-
Confidence            0111111223456666666655555555555566666666666554444445443 45556666665554433343321 


Q ss_pred             cccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCc
Q 035922          418 GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK  480 (581)
Q Consensus       418 ~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  480 (581)
                        .++ +.|++++|.++ .+|..+..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus       846 --~nL-~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        846 --TNI-SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             --ccc-CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence              233 45555555555 455555555555555555533222444445555555555555553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.93  E-value=5.5e-25  Score=254.55  Aligned_cols=338  Identities=19%  Similarity=0.233  Sum_probs=273.1

Q ss_pred             cccCCCCCcEEECCCCC------CCCCCchhccCCC-CCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcc
Q 035922           90 YIGNLSFLRRLHLDNNN------FTHAIPPEIGRLR-RLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE  162 (581)
Q Consensus        90 ~~~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  162 (581)
                      .|..+.+|+.|.+..+.      +...+|+.+..++ +|+.|++.++.+. .+|..+ ...+|++|++++|.+. .++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            57889999999997653      3335677777764 6999999999987 778777 5789999999999987 67888


Q ss_pred             cCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCcc
Q 035922          163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT  242 (581)
Q Consensus       163 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  242 (581)
                      +..+++|++|+++++...+.+| .++.+++|++|++++|.....+|..+.++++|+.|++++|..-+.+|..+ ++++|+
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            8999999999999987666777 48899999999999998778899999999999999999987666888766 789999


Q ss_pred             EEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccc-------cc
Q 035922          243 TFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIF-------GS  315 (581)
Q Consensus       243 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~-------~~  315 (581)
                      .|++++|.....+|..    ..+|+.|++.+|.+.            .+|..+ .+ ++|+.|.+.++...       ..
T Consensus       708 ~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~------------~lP~~~-~l-~~L~~L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDI----STNISWLDLDETAIE------------EFPSNL-RL-ENLDELILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             EEeCCCCCCccccccc----cCCcCeeecCCCccc------------cccccc-cc-cccccccccccchhhcccccccc
Confidence            9999998766665532    467777777766543            234433 23 37888888774321       11


Q ss_pred             CchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCC
Q 035922          316 IPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQC  395 (581)
Q Consensus       316 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  395 (581)
                      .+......++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~  845 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---S  845 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---c
Confidence            22223345789999999998877899999999999999999987666778765 7899999999999766566643   4


Q ss_pred             CCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCc
Q 035922          396 KSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL  456 (581)
Q Consensus       396 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  456 (581)
                      .+|++|++++|.+. .+|.++..+++| +.|++++|+--..+|..+..+++|+.+++++|.
T Consensus       846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L-~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        846 TNISDLNLSRTGIE-EVPWWIEKFSNL-SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccCEeECCCCCCc-cChHHHhcCCCC-CEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            68999999999998 899999999999 899999965444688888999999999999985

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.8e-26  Score=219.38  Aligned_cols=418  Identities=22%  Similarity=0.249  Sum_probs=229.3

Q ss_pred             CCccccCCCCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccC
Q 035922           73 HFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSV  152 (581)
Q Consensus        73 ~~c~w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  152 (581)
                      -.|+-.|-..+...+|+..      ..++|..|+|+.+.|.+|+.+++||.||||+|.|+.+-|++|..+.+|..|-+-+
T Consensus        51 VdCr~~GL~eVP~~LP~~t------veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPET------VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             EEccCCCcccCcccCCCcc------eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence            4566665555555555543      6778888888877777788888888888888888877777777777776665554


Q ss_pred             -CcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCC
Q 035922          153 -NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTI  231 (581)
Q Consensus       153 -n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  231 (581)
                       |+|+......|+++..|+.|.+.-|++.-...+.|..+++|..|.+..|.+...--..|..+..++++.+..|.+... 
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-  203 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-  203 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-
Confidence             777765556677777777777777777655556667777777777777776433333666677777777766664311 


Q ss_pred             CccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCc
Q 035922          232 PSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK  311 (581)
Q Consensus       232 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~  311 (581)
                          .+++.+..... .+      |.++.. ..-.....+.+.++.           -.-+..+......+.+-..+.+.
T Consensus       204 ----CnL~wla~~~a-~~------~ietsg-arc~~p~rl~~~Ri~-----------q~~a~kf~c~~esl~s~~~~~d~  260 (498)
T KOG4237|consen  204 ----CNLPWLADDLA-MN------PIETSG-ARCVSPYRLYYKRIN-----------QEDARKFLCSLESLPSRLSSEDF  260 (498)
T ss_pred             ----cccchhhhHHh-hc------hhhccc-ceecchHHHHHHHhc-----------ccchhhhhhhHHhHHHhhccccC
Confidence                01111111000 00      000000 000111111111110           00000011000011111112222


Q ss_pred             ccccCch-hhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcc
Q 035922          312 IFGSIPP-GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS  390 (581)
Q Consensus       312 l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  390 (581)
                      ..+..|. .|..+++|++|+|++|+++++-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+++...|.
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            3333332 366777777777777777777777777777777777777777655555667777777777777777777777


Q ss_pred             cccCCCCCcEEECCCCccccc-----CCcchhc----------ccCCcceeEcCCCcccc---cCCcccc---------C
Q 035922          391 SLCQCKSLIGINFSKNNLSGT-----IPPQLFG----------LSSLSISLDLSRNHFTG---SLPIEVG---------N  443 (581)
Q Consensus       391 ~l~~l~~L~~L~ls~n~l~~~-----~p~~~~~----------l~~L~~~L~Ls~n~l~~---~~p~~l~---------~  443 (581)
                      .|..+.+|.+|++-.|.+.-.     +-+|+.+          -+..++.++++...+..   ..|+..+         .
T Consensus       341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~  420 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPP  420 (498)
T ss_pred             cccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCC
Confidence            777777777777766655311     1111111          01111233333332210   1111111         1


Q ss_pred             CCCCC-eeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEE
Q 035922          444 LKNLG-VLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENV  522 (581)
Q Consensus       444 l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  522 (581)
                      ++.+. +...|+..+. .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+|+|++...--..|.++.+|.+|
T Consensus       421 c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tl  493 (498)
T KOG4237|consen  421 CTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTL  493 (498)
T ss_pred             cchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhee
Confidence            12222 2223333333 4443332  23456777788777 55654  55666 77888888775555567777778888


Q ss_pred             ECcCC
Q 035922          523 NLSYN  527 (581)
Q Consensus       523 ~ls~N  527 (581)
                      -+|||
T Consensus       494 ilsyn  498 (498)
T KOG4237|consen  494 ILSYN  498 (498)
T ss_pred             EEecC
Confidence            77776

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=4.2e-26  Score=216.94  Aligned_cols=388  Identities=21%  Similarity=0.183  Sum_probs=262.3

Q ss_pred             ccccC-ccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccC-CCCCCCCcccCcCCCCCCEEEccCCcCcccCCc
Q 035922           84 AGSIS-PYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNN-NSIGGEIPATMSRCSNIILMDLSVNQLLGNIPP  161 (581)
Q Consensus        84 ~g~i~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  161 (581)
                      ...|| .+|+.+++||+||||+|+|+.+-|++|..+++|..|-+.+ |+|+.....+|+++..|+.|.+.-|++.-...+
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~  158 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD  158 (498)
T ss_pred             cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence            34455 4889999999999999999999999999999998877765 999977777899999999999999999988888


Q ss_pred             ccCCCCCCCEEECCCCcccccCCc-cCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCC
Q 035922          162 EFGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSS  240 (581)
Q Consensus       162 ~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  240 (581)
                      .|..+++|..|.+.+|.+. .++. .+..+..++.+.+..|.+..     ..+++.+..... .+.      ..++....
T Consensus       159 al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a-~~~------ietsgarc  225 (498)
T KOG4237|consen  159 ALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLA-MNP------IETSGARC  225 (498)
T ss_pred             HHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHHh-hch------hhccccee
Confidence            9999999999999999998 4554 78899999999999887421     122222221111 111      01111111


Q ss_pred             ccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhh
Q 035922          241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI  320 (581)
Q Consensus       241 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l  320 (581)
                      .....+.+.++...-...+...   ++.+-       + -..+.+...+..|..-++-.++|++|++++|+++++-+.+|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~---~esl~-------s-~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCS---LESLP-------S-RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhh---HHhHH-------H-hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence            1111111111111111111100   00000       0 00011122233444333333588899999999988888889


Q ss_pred             cCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCC--------------
Q 035922          321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQG--------------  386 (581)
Q Consensus       321 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------  386 (581)
                      .....++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|..|++-.|.+.-              
T Consensus       295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~  374 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK  374 (498)
T ss_pred             cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence            999999999999998886666778888999999999999998888888888899999888776531              


Q ss_pred             ---CCcccccCCCCCcEEECCCCccc---ccCCcch---------hcccCCcceeEcCCCcccccCCccccCCCCCCeee
Q 035922          387 ---TIPSSLCQCKSLIGINFSKNNLS---GTIPPQL---------FGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLD  451 (581)
Q Consensus       387 ---~~p~~l~~l~~L~~L~ls~n~l~---~~~p~~~---------~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  451 (581)
                         ..|. -+....++.+.++...+.   ...|++.         ...+-+.+....|+..+. .+|..+.  ..-++|+
T Consensus       375 ~~~~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~tely  450 (498)
T KOG4237|consen  375 SVVGNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELY  450 (498)
T ss_pred             CCCCCCC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHh
Confidence               0111 122334666666655442   1122221         122333344556666665 5555443  3567899


Q ss_pred             ccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922          452 ISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN  503 (581)
Q Consensus       452 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n  503 (581)
                      +.+|.++ .+|..  .+.+| .+++++|++...--..|.++++|.+|-+++|
T Consensus       451 l~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  451 LDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            9999999 77876  67888 8999999998666678999999999999886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.4e-21  Score=210.73  Aligned_cols=183  Identities=29%  Similarity=0.362  Sum_probs=90.0

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +|+.|++++|+++ .+|.   ..++|++|++++|++++ +|..   ..+|+.|++++|.+++ +|..   ..+|+.|+++
T Consensus       283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS  350 (788)
T PRK15387        283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS  350 (788)
T ss_pred             hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence            3444444444444 2232   12445555555555552 2221   1234455555555542 3321   1345555555


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|++++ +|..   ..+|+.|++++|++. .+|...   ..| +.|++++|+++ .+|..   .++|+.|++++|+++ .
T Consensus       351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s  416 (788)
T PRK15387        351 DNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S  416 (788)
T ss_pred             CCccCC-CCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence            555552 3321   234555555555555 344322   233 55666666655 24432   245666666666665 3


Q ss_pred             cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhh
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFL  513 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l  513 (581)
                      +|..   ..+|+.|++++|+++ .+|+.+..++.|+.|++++|.+++.+|..+
T Consensus       417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4432   234555666666665 456666666666666666666666555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.3e-21  Score=211.07  Aligned_cols=142  Identities=30%  Similarity=0.372  Sum_probs=63.5

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      .|+.|++++|.+++ +|..   ..+|++|++++|++++ +|..   .++|+.|++++|.++ .+|..   ..+|+.|+++
T Consensus       323 ~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs  390 (788)
T PRK15387        323 ELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVS  390 (788)
T ss_pred             cccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEec
Confidence            34444455555442 3321   1245555555555552 3321   134455555555554 23322   1345555555


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|++++ +|..   .++|+.|++++|+++ .+|...   ..+ +.|++++|+++ .+|..+.++++|+.|+|++|++++.
T Consensus       391 ~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L-~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        391 GNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGL-LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhh-hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            555552 3321   234555555555554 344322   122 34455555554 4444444455555555555555444


Q ss_pred             cCcc
Q 035922          461 IPIS  464 (581)
Q Consensus       461 ~p~~  464 (581)
                      .+..
T Consensus       461 ~~~~  464 (788)
T PRK15387        461 TLQA  464 (788)
T ss_pred             HHHH
Confidence            4433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=3.7e-20  Score=201.08  Aligned_cols=38  Identities=11%  Similarity=0.219  Sum_probs=27.6

Q ss_pred             cCCCHhHHHHHHHHHhcCCCCCCCCCCC----CCCCCCCccccC
Q 035922           40 VAGNETDREALLEFKSKITVDPFGVLGS----WNESSHFCKWHE   79 (581)
Q Consensus        40 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~----w~~~~~~c~w~~   79 (581)
                      ....+++.+.++++.+.+. -| +...+    |.+.+++|.-.+
T Consensus        58 ~~~~~~~~~~~~~~~~~l~-~p-~~~~~~~~~~~~~~~fc~~~~   99 (754)
T PRK15370         58 ETASPEEIKSKFECLRMLA-FP-AYADNIQYSRGGADQYCILSE   99 (754)
T ss_pred             CCCCHHHHHHHHHHHHHhc-CC-chhhccccccCCCCcccccCC
Confidence            3456788899999999885 33 24444    988889998665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=3.8e-20  Score=200.94  Aligned_cols=54  Identities=30%  Similarity=0.442  Sum_probs=23.5

Q ss_pred             CCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCC
Q 035922          169 IKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS  228 (581)
Q Consensus       169 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  228 (581)
                      ...|+++++.++ .+|..+.  +.|+.|++++|.++. +|..+.  ++|++|++++|+++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt  233 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT  233 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc
Confidence            344555554444 3343332  245555555555442 232221  24455555555444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=2.8e-20  Score=187.46  Aligned_cols=252  Identities=21%  Similarity=0.216  Sum_probs=171.8

Q ss_pred             CCcEEEccCCccccc----CchhhcCCCCCCEEEeecCcCcc------cccccccCCCCCCeEeccCCcccccCCccCCC
Q 035922          301 TLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNNKLSG------TIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGN  370 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  370 (581)
                      .|+.|+++++.++..    ++..+...+++++++++++.+.+      .++..+..+++|++|++++|.+.+..+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            678888888777432    44556667778888888876652      23445667778888888888876544444444


Q ss_pred             CCC---CcEEeecCcccCCC----CcccccCC-CCCcEEECCCCccccc----CCcchhcccCCcceeEcCCCccccc--
Q 035922          371 LKM---LIQLEVSENFLQGT----IPSSLCQC-KSLIGINFSKNNLSGT----IPPQLFGLSSLSISLDLSRNHFTGS--  436 (581)
Q Consensus       371 l~~---L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~~L~Ls~n~l~~~--  436 (581)
                      +.+   |++|++++|++.+.    +...+..+ ++|++|++++|.+++.    ++..+..+..+ +.|++++|.+++.  
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~  182 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGI  182 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHH
Confidence            444   88888888887632    22344555 7888888888888732    33445556677 7888888888742  


Q ss_pred             --CCccccCCCCCCeeeccCCcCccc----cCccccCCCCCcEEECCCCcCcccCccccc-----CCCCCCEEECCCCcc
Q 035922          437 --LPIEVGNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLMQGNKFYGPIPSSLR-----SLRGLSVWDFAQNNL  505 (581)
Q Consensus       437 --~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~ls~n~l  505 (581)
                        ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+.....+.     ..+.|+.|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              333455567899999999988643    344566788899999999988763333332     237899999999988


Q ss_pred             c----cccchhhhcCCCCCEEECcCCCCCCCC---CC-Ccccc-CCcCcccccCCCC
Q 035922          506 S----GEIPKFLAGFKLLENVNLSYNDLGARY---VP-TEGVI-KNSSATSVMGNSK  553 (581)
Q Consensus       506 ~----~~~p~~l~~l~~L~~L~ls~N~l~~~~---ip-~~~~~-~~l~~l~~~gN~~  553 (581)
                      +    ..+...+..++.|+++++++|++....   +. ....+ ..++.+++.+||+
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            6    234456677788999999999987431   11 11233 5677888888874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=6.5e-20  Score=184.85  Aligned_cols=209  Identities=22%  Similarity=0.278  Sum_probs=126.0

Q ss_pred             hcCCCCCCEEEeecCcCcccccccccCCCC---CCeEeccCCcccc----cCCccCCCC-CCCcEEeecCcccCCC----
Q 035922          320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQN---LRMLGMSGNRFSG----NIPLSVGNL-KMLIQLEVSENFLQGT----  387 (581)
Q Consensus       320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----  387 (581)
                      +..+++|++|++++|.+.+..+..+..+.+   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            444455555555555554333333333332   5555555555442    111223333 5566666666665532    


Q ss_pred             CcccccCCCCCcEEECCCCccccc----CCcchhcccCCcceeEcCCCccccc----CCccccCCCCCCeeeccCCcCcc
Q 035922          388 IPSSLCQCKSLIGINFSKNNLSGT----IPPQLFGLSSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSG  459 (581)
Q Consensus       388 ~p~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~  459 (581)
                      ++..+..+++|++|++++|.+.+.    ++..+..++.+ +.|++++|.+++.    +...+..+++|++|++++|.+++
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            233445556677777777766532    22333444566 6777777776533    33445667889999999988875


Q ss_pred             ccCcccc-----CCCCCcEEECCCCcCcc----cCcccccCCCCCCEEECCCCccccc----cchhhhcC-CCCCEEECc
Q 035922          460 EIPISLG-----SCTSLEKLLMQGNKFYG----PIPSSLRSLRGLSVWDFAQNNLSGE----IPKFLAGF-KLLENVNLS  525 (581)
Q Consensus       460 ~~p~~l~-----~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~----~p~~l~~l-~~L~~L~ls  525 (581)
                      .....+.     ..+.|+.|++++|.+++    .+.+.+..+++|+.+++++|.+...    +...+... +.|+++++.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            3332222     24789999999998862    2345566778999999999999854    44555555 789999998


Q ss_pred             CCCC
Q 035922          526 YNDL  529 (581)
Q Consensus       526 ~N~l  529 (581)
                      +|++
T Consensus       316 ~~~~  319 (319)
T cd00116         316 DDSF  319 (319)
T ss_pred             CCCC
Confidence            8864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2e-19  Score=152.71  Aligned_cols=186  Identities=31%  Similarity=0.515  Sum_probs=132.8

Q ss_pred             cCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcE
Q 035922          321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIG  400 (581)
Q Consensus       321 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  400 (581)
                      -.+..++.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|++
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            34556667777777777 56666777777777777777776 66777777777777777777776 66777777777888


Q ss_pred             EECCCCccc-ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCC
Q 035922          401 INFSKNNLS-GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN  479 (581)
Q Consensus       401 L~ls~n~l~-~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  479 (581)
                      ||+++|++. ..+|..|+.+..+ +.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|++.+|
T Consensus       107 ldltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            888777775 3467778888888 78888888887 77888888888888888888877 77888888888888888888


Q ss_pred             cCcccCcccccCCC---CCCEEECCCCccccccchhh
Q 035922          480 KFYGPIPSSLRSLR---GLSVWDFAQNNLSGEIPKFL  513 (581)
Q Consensus       480 ~l~~~~p~~l~~l~---~L~~L~ls~n~l~~~~p~~l  513 (581)
                      +++ .+|..++++.   +-+.+.+.+|.....|.+.|
T Consensus       184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence            887 4454455442   33444555555544444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=5.1e-19  Score=150.20  Aligned_cols=163  Identities=26%  Similarity=0.410  Sum_probs=105.3

Q ss_pred             CCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcce
Q 035922          346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS  425 (581)
Q Consensus       346 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~  425 (581)
                      .+.+.+.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. .+|..|+.++.+ +.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l-ev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL-EV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh-hh
Confidence            4556666777777776 55666666777777777777766 55666666777777777666666 666666666666 66


Q ss_pred             eEcCCCcccc-cCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCc
Q 035922          426 LDLSRNHFTG-SLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNN  504 (581)
Q Consensus       426 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  504 (581)
                      ||++.|++.. .+|..|..+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.+++|+.|.+.+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            6666666642 35666666666666666666666 66666666666666666666665 556666666666666666666


Q ss_pred             cccccchhhhc
Q 035922          505 LSGEIPKFLAG  515 (581)
Q Consensus       505 l~~~~p~~l~~  515 (581)
                      ++ .+|..++.
T Consensus       185 l~-vlppel~~  194 (264)
T KOG0617|consen  185 LT-VLPPELAN  194 (264)
T ss_pred             ee-ecChhhhh
Confidence            65 34433443

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=1.2e-13  Score=149.79  Aligned_cols=154  Identities=29%  Similarity=0.463  Sum_probs=123.2

Q ss_pred             CCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCc-----cccCCCCcccccCccccCCCCCcEEECCCCCCCCCCchhc
Q 035922           41 AGNETDREALLEFKSKITVDPFGVLGSWNESSHFC-----KWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEI  115 (581)
Q Consensus        41 ~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c-----~w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l  115 (581)
                      ...++|.+||+++|+.+. ++..  .+|.+  ++|     .|.|..+-..   .. .....++.|+|++|.+.+.+|..+
T Consensus       368 ~t~~~~~~aL~~~k~~~~-~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~---~~-~~~~~v~~L~L~~n~L~g~ip~~i  438 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLG-LPLR--FGWNG--DPCVPQQHPWSGADCQFD---ST-KGKWFIDGLGLDNQGLRGFIPNDI  438 (623)
T ss_pred             ccCchHHHHHHHHHHhcC-Cccc--CCCCC--CCCCCcccccccceeecc---CC-CCceEEEEEECCCCCccccCCHHH
Confidence            345678999999999985 4432  47964  344     6887543211   00 112257889999999999999999


Q ss_pred             cCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCC-CCCc
Q 035922          116 GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNL-SSII  194 (581)
Q Consensus       116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~  194 (581)
                      +.+++|++|+|++|.+.|.+|..++.+++|++|+|++|.+++.+|+.++++++|++|++++|+++|.+|..++.. .++.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887653 4567


Q ss_pred             EEEccCCCC
Q 035922          195 RLSLTYNNI  203 (581)
Q Consensus       195 ~L~l~~n~l  203 (581)
                      .+++.+|..
T Consensus       519 ~l~~~~N~~  527 (623)
T PLN03150        519 SFNFTDNAG  527 (623)
T ss_pred             eEEecCCcc
Confidence            777777754

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=1e-12  Score=142.78  Aligned_cols=118  Identities=31%  Similarity=0.493  Sum_probs=104.8

Q ss_pred             CCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECc
Q 035922          446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLS  525 (581)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  525 (581)
                      .++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.||+++|++++.+|+.+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCc--cccCCcCcccccCCCCCccCCCCCCCCCCC
Q 035922          526 YNDLGARYVPTE--GVIKNSSATSVMGNSKLCGGIPKLQFPRCT  567 (581)
Q Consensus       526 ~N~l~~~~ip~~--~~~~~l~~l~~~gN~~lcg~~~~~~~~~c~  567 (581)
                      +|+++|. +|..  ..+..+..+++.+|+++||.+ .  .+.|.
T Consensus       499 ~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~lc~~p-~--l~~C~  538 (623)
T PLN03150        499 GNSLSGR-VPAALGGRLLHRASFNFTDNAGLCGIP-G--LRACG  538 (623)
T ss_pred             CCccccc-CChHHhhccccCceEEecCCccccCCC-C--CCCCc
Confidence            9999998 8863  223456788999999999853 2  35675

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=3.1e-14  Score=142.57  Aligned_cols=173  Identities=29%  Similarity=0.431  Sum_probs=100.6

Q ss_pred             CCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEEC
Q 035922          324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF  403 (581)
Q Consensus       324 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  403 (581)
                      ..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|++++++.|+++ ..|..++.++ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            33445566666665 55555555666666666666665 55556666666666666666665 4455555554 566666


Q ss_pred             CCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc
Q 035922          404 SKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG  483 (581)
Q Consensus       404 s~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  483 (581)
                      ++|+++ .+|+.++...++ ..||.+.|++. .+|..++++.+|+.|.+..|++. .+|+.+. .-.|..||+|.|+++ 
T Consensus       151 sNNkl~-~lp~~ig~~~tl-~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTL-AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-  224 (722)
T ss_pred             ecCccc-cCCcccccchhH-HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence            666665 556555555555 45666666655 45555555666666666666655 4455554 234555666666665 


Q ss_pred             cCcccccCCCCCCEEECCCCccc
Q 035922          484 PIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       484 ~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      .+|-.|.+|..|++|-|.+|.+.
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC
Confidence            45555666666666666666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.33  E-value=4.2e-14  Score=141.58  Aligned_cols=192  Identities=33%  Similarity=0.467  Sum_probs=166.8

Q ss_pred             CCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcce
Q 035922          346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS  425 (581)
Q Consensus       346 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~  425 (581)
                      .+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|+++|++.|+++ .+|..++.++ | +.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L-kv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L-KV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c-ee
Confidence            4555667899999998 88999999999999999999998 78889999999999999999999 8999998775 4 67


Q ss_pred             eEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcc
Q 035922          426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNL  505 (581)
Q Consensus       426 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l  505 (581)
                      |-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||+|+|++
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence            999999999 89999999999999999999998 88999999999999999999998 567777766 588999999999


Q ss_pred             ccccchhhhcCCCCCEEECcCCCCCCCCCCC----ccccCCcCccccc
Q 035922          506 SGEIPKFLAGFKLLENVNLSYNDLGARYVPT----EGVIKNSSATSVM  549 (581)
Q Consensus       506 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~----~~~~~~l~~l~~~  549 (581)
                      + .||..|.+++.|++|-|.+|+++..  |.    .|...=++.++..
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLqSP--PAqIC~kGkVHIFKyL~~q  268 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQSP--PAQICEKGKVHIFKYLSTQ  268 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCCCC--hHHHHhccceeeeeeecch
Confidence            8 8999999999999999999999853  42    2444444555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.30  E-value=3.2e-12  Score=132.69  Aligned_cols=199  Identities=36%  Similarity=0.508  Sum_probs=132.1

Q ss_pred             EEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCC-CCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922          304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQ-NLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN  382 (581)
Q Consensus       304 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  382 (581)
                      .+++..+.+...+.. +..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchh-hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            467777766433332 445567788888888777 4555555553 7888888888776 45455677777777888777


Q ss_pred             ccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccC
Q 035922          383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIP  462 (581)
Q Consensus       383 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  462 (581)
                      ++. .+|......+.|+.|++++|++. .+|........+ .++++++|++. ..+..+.++..+..+.+.+|++. ..+
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            777 44444446777777777777777 666655444445 67777777544 45556667777777777777766 335


Q ss_pred             ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchh
Q 035922          463 ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF  512 (581)
Q Consensus       463 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~  512 (581)
                      ..++.+++++.|++++|.++.. +. ++.+.+++.|++++|.+...+|..
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence            5666777777777777777633 33 667777777777777776655543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.29  E-value=4.4e-12  Score=131.62  Aligned_cols=179  Identities=38%  Similarity=0.564  Sum_probs=115.0

Q ss_pred             CCcEEEccCCcccccCchhhcCCC-CCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLV-NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV  379 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  379 (581)
                      .++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|++. .++......+.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            5677777777776 4444455553 6777777777776 44455667777777777777776 44444446677777777


Q ss_pred             cCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcc
Q 035922          380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG  459 (581)
Q Consensus       380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  459 (581)
                      ++|++. .+|........|+++.+++|.+. ..+..+..+..+ ..+.+.+|++. .++..++.+++++.|++++|+++ 
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-  268 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-  268 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc-cccccCCceee-eccchhccccccceecccccccc-
Confidence            777776 44554444555777777777544 455556666666 56667777666 33556666677777777777776 


Q ss_pred             ccCccccCCCCCcEEECCCCcCcccCccc
Q 035922          460 EIPISLGSCTSLEKLLMQGNKFYGPIPSS  488 (581)
Q Consensus       460 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  488 (581)
                      .++. ++.+.+++.|++++|.+....|..
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccc-ccccCccCEEeccCccccccchhh
Confidence            4443 666777777777777776555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=5.7e-12  Score=116.96  Aligned_cols=128  Identities=27%  Similarity=0.305  Sum_probs=56.3

Q ss_pred             CCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEEC
Q 035922          397 SLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM  476 (581)
Q Consensus       397 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  476 (581)
                      .|+++|+++|.|+ .+..++.-.+.+ +.|++|.|.+. .+. .+..+++|+.||||+|.++ .+..+-..+-+.++|.|
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccce-eEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            3445555555544 444444444444 44555555544 221 2444445555555555444 22222233444444555


Q ss_pred             CCCcCcccCcccccCCCCCCEEECCCCccccccc-hhhhcCCCCCEEECcCCCCCC
Q 035922          477 QGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIP-KFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       477 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      ++|.+...  ..++.+-+|..||+++|+|...-. ..++++|.|+++.+.+|++.+
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            55544311  233444444555555554432111 234444555555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=2.7e-12  Score=121.90  Aligned_cols=228  Identities=21%  Similarity=0.213  Sum_probs=139.7

Q ss_pred             CCcEEEccCCccccc----CchhhcCCCCCCEEEeecC---cCcccccc-------cccCCCCCCeEeccCCcccccCCc
Q 035922          301 TLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNN---KLSGTIPS-------AIGDLQNLRMLGMSGNRFSGNIPL  366 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n---~l~~~~~~-------~l~~l~~L~~L~Ls~n~l~~~~~~  366 (581)
                      +++.+++++|.+...    +...+.+.++|+..++++-   +....+|+       ++..+++|++++||.|-+.-..+.
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            677777777776533    3334555667777776653   11222332       334566777777777766543333


Q ss_pred             c----CCCCCCCcEEeecCcccCCCC-------------cccccCCCCCcEEECCCCccccc----CCcchhcccCCcce
Q 035922          367 S----VGNLKMLIQLEVSENFLQGTI-------------PSSLCQCKSLIGINFSKNNLSGT----IPPQLFGLSSLSIS  425 (581)
Q Consensus       367 ~----~~~l~~L~~L~L~~n~l~~~~-------------p~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~~  425 (581)
                      .    +..+..|++|+|.+|.+...-             ......-+.|+++...+|++...    +...+...+.+ ..
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l-ee  189 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL-EE  189 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc-ce
Confidence            2    244677777777777654211             11233456788888887776421    22344455566 77


Q ss_pred             eEcCCCccccc----CCccccCCCCCCeeeccCCcCcc----ccCccccCCCCCcEEECCCCcCcccCcccc-----cCC
Q 035922          426 LDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSG----EIPISLGSCTSLEKLLMQGNKFYGPIPSSL-----RSL  492 (581)
Q Consensus       426 L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l  492 (581)
                      +.++.|.|...    +...+..+++|+.|||++|.++.    .+...+..++.|+.|++++|.+...-...|     ...
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA  269 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence            77777776422    23456678888888888887763    234456677788888888888764433222     235


Q ss_pred             CCCCEEECCCCccccc----cchhhhcCCCCCEEECcCCCC
Q 035922          493 RGLSVWDFAQNNLSGE----IPKFLAGFKLLENVNLSYNDL  529 (581)
Q Consensus       493 ~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~ls~N~l  529 (581)
                      +.|++|++.+|.++..    +...+...+.|+.|+|++|.+
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            7888888888887642    333455677888888888887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.15  E-value=1.9e-11  Score=135.55  Aligned_cols=132  Identities=29%  Similarity=0.366  Sum_probs=99.5

Q ss_pred             cCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCC--CCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922           92 GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNS--IGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI  169 (581)
Q Consensus        92 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (581)
                      .+....|...+.+|.+. .++.. ...+.|++|-+.+|.  +.....+.|..++.|++|||++|.--+.+|..++.+.+|
T Consensus       520 ~~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             cchhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            34456677887777765 23332 234578888888885  553444557788889999999887777888888888999


Q ss_pred             CEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCcc
Q 035922          170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNM  226 (581)
Q Consensus       170 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  226 (581)
                      |+|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+++|++|.+....
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999888888 888888888888888888877656666666778888888776654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=2.1e-11  Score=113.17  Aligned_cols=130  Identities=24%  Similarity=0.197  Sum_probs=92.7

Q ss_pred             hhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCC
Q 035922          416 LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGL  495 (581)
Q Consensus       416 ~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  495 (581)
                      +..+..+ +.+|||+|.|+ .+.++..-.|.++.|++|+|.+. .+. .+..+++|+.||||+|.++ .+..+-..+-++
T Consensus       280 ~dTWq~L-telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  280 ADTWQEL-TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             cchHhhh-hhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            3334455 77888888887 66667777788888888888886 333 3777888888888888887 444455567788


Q ss_pred             CEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCC-CCCccccCCcCcccccCCC
Q 035922          496 SVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARY-VPTEGVIKNSSATSVMGNS  552 (581)
Q Consensus       496 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~-ip~~~~~~~l~~l~~~gN~  552 (581)
                      +.|.++.|.+...  ..+..+-+|..||+++|++.... +-..+.++.|+.+.+.+||
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            8888888877532  45677778888888888876431 2234667778888888888

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=3.4e-11  Score=114.48  Aligned_cols=97  Identities=23%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             hccCCCCCCEEEccCCCCCCC----CcccCcCCCCCCEEEccCCcCccc----CCcccCCCCCCCEEECCCCcccccCCc
Q 035922          114 EIGRLRRLRGLTLNNNSIGGE----IPATMSRCSNIILMDLSVNQLLGN----IPPEFGSLSKIKDLRSFMNNLTGSIPS  185 (581)
Q Consensus       114 ~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~  185 (581)
                      .+..+..+..++|++|.|...    +...+.+.++|+..++|+ .++|.    +|+.+.                 .+-+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~-----------------~l~~   86 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALK-----------------MLSK   86 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHH-----------------HHHH
Confidence            345566677777777766532    223344555666666653 22221    221110                 0011


Q ss_pred             cCcCCCCCcEEEccCCCCCCcCCC----ccCCCCcccccccCCccCC
Q 035922          186 SLGNLSSIIRLSLTYNNIARSIPD----TLGYLENLSFLSLGGNMLS  228 (581)
Q Consensus       186 ~l~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~l~~n~l~  228 (581)
                      .+-.+++|++++||.|-+.-..+.    .+..+..|++|.|.+|.+.
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            233445566666666655333222    2344566666666666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=4.7e-11  Score=116.56  Aligned_cols=204  Identities=25%  Similarity=0.200  Sum_probs=104.7

Q ss_pred             CCcEEEccCCcccccCc-hhhcCCCCCCEEEeecCcCcc--cccccccCCCCCCeEeccCCcccccCCccC-CCCCCCcE
Q 035922          301 TLASLFLDNNKIFGSIP-PGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQ  376 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~  376 (581)
                      +|+.+.|.++....... .....|++++.|||+.|-+..  .+......+++|+.|+++.|++........ ..++.|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            55556666555442111 244556667777777665542  222334466677777777776653222111 23566666


Q ss_pred             EeecCcccCCC-CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC--ccccCCCCCCeeecc
Q 035922          377 LEVSENFLQGT-IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP--IEVGNLKNLGVLDIS  453 (581)
Q Consensus       377 L~L~~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls  453 (581)
                      |.++.|.++.. +-..+..+|+|+.|++..|...+.-.....-+..+ +.|||++|++- ..+  ...+.++.|+.|+++
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L-~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL-QELDLSNNNLI-DFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH-hhccccCCccc-ccccccccccccchhhhhcc
Confidence            77776666532 22233456666777776664322222223333444 56666666654 222  334556666666666


Q ss_pred             CCcCccc-cCcc-----ccCCCCCcEEECCCCcCccc-CcccccCCCCCCEEECCCCccc
Q 035922          454 GNLLSGE-IPIS-----LGSCTSLEKLLMQGNKFYGP-IPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       454 ~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      .|.+... .|..     ...+++|+.|+++.|++... .-..+..+++|+.|.+-.|.+.
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            6666531 1222     23456666666666666421 0123344455555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3e-11  Score=117.89  Aligned_cols=209  Identities=22%  Similarity=0.201  Sum_probs=141.5

Q ss_pred             cCCCCCCEEEeecCcCccccc--ccccCCCCCCeEeccCCcccccC--CccCCCCCCCcEEeecCcccCCCCccc-ccCC
Q 035922          321 GKLVNLRRLYVWNNKLSGTIP--SAIGDLQNLRMLGMSGNRFSGNI--PLSVGNLKMLIQLEVSENFLQGTIPSS-LCQC  395 (581)
Q Consensus       321 ~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l  395 (581)
                      .++.+|+.+.|.++... ..+  .....|++++.||++.|-++...  -.....+++|+.|+++.|++....... -..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            56788999999988776 233  35668899999999999877422  223456899999999999876332211 1246


Q ss_pred             CCCcEEECCCCcccc-cCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcccc-CccccCCCCCcE
Q 035922          396 KSLIGINFSKNNLSG-TIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI-PISLGSCTSLEK  473 (581)
Q Consensus       396 ~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~  473 (581)
                      +.|+.|.++.|.++. .+-.....++++ ..|++..|.....-......+..|++|||++|++-... -...+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            788889999988862 233444567777 78888888533233334445678888888888875221 135667888888


Q ss_pred             EECCCCcCccc-Cccc-----ccCCCCCCEEECCCCccccccc--hhhhcCCCCCEEECcCCCCCCC
Q 035922          474 LLMQGNKFYGP-IPSS-----LRSLRGLSVWDFAQNNLSGEIP--KFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       474 L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      |+++.+.+... .|+.     ....++|+.|++++|++.. ++  ..+..+++|+.|.+-.|.+...
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence            88888887643 2332     3456788888888888853 22  2355567777777777877643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=1.8e-10  Score=102.87  Aligned_cols=103  Identities=24%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             ceeEcCCCcccccCCcccc-CCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccc-cCCCCCCEEECC
Q 035922          424 ISLDLSRNHFTGSLPIEVG-NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSL-RSLRGLSVWDFA  501 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ls  501 (581)
                      ++|+|.+|.|+ .+. .++ .+.+|+.|++++|.|+ .++ .+..++.|++|++++|+++. +.+.+ ..+++|+.|+++
T Consensus        22 ~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   22 RELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence            56666666666 232 333 3566666666666666 332 35566666666666666663 33333 346666666666


Q ss_pred             CCccccccc-hhhhcCCCCCEEECcCCCCCC
Q 035922          502 QNNLSGEIP-KFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       502 ~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      +|+|...-. ..+..+++|++|++.+|+++.
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            666643211 345566666666666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=2.7e-10  Score=101.69  Aligned_cols=125  Identities=29%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             CCCCCcEEECCCCcccccCCcchh-cccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccc-cCCCCC
Q 035922          394 QCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL-GSCTSL  471 (581)
Q Consensus       394 ~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L  471 (581)
                      ++.++++|++.+|.|. .+. .+. .+.++ +.|++++|.|+ .++ .+..++.|++|++++|+|+ .+...+ ..+++|
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L-~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKL-EVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT---EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             cccccccccccccccc-ccc-chhhhhcCC-CEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            4445666666666665 222 233 34555 66777777766 333 4566777777777777777 344334 357777


Q ss_pred             cEEECCCCcCcccC-cccccCCCCCCEEECCCCcccccc---chhhhcCCCCCEEEC
Q 035922          472 EKLLMQGNKFYGPI-PSSLRSLRGLSVWDFAQNNLSGEI---PKFLAGFKLLENVNL  524 (581)
Q Consensus       472 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~---p~~l~~l~~L~~L~l  524 (581)
                      ++|++++|++...- -..+..+++|+.|++.+|.++..-   .-.+..+|+|+.||-
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            77777777775321 235667788888888888776431   123567788888774

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=5.5e-10  Score=124.15  Aligned_cols=129  Identities=27%  Similarity=0.318  Sum_probs=99.0

Q ss_pred             CCCCCcEEECCCCC--CCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCC
Q 035922           93 NLSFLRRLHLDNNN--FTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIK  170 (581)
Q Consensus        93 ~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (581)
                      ..+.|++|-+..|.  +....++.|..++.|++|||++|.=-+.+|..++.+-+||+|+++++.+. .+|..++++..|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            34478899888886  55455566888999999999988766799999999999999999999998 8899999999999


Q ss_pred             EEECCCCcccccCCccCcCCCCCcEEEccCCCC--CCcCCCccCCCCccccccc
Q 035922          171 DLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI--ARSIPDTLGYLENLSFLSL  222 (581)
Q Consensus       171 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l--~~~~p~~l~~l~~L~~L~l  222 (581)
                      +|++..+.....+|.....+.+|++|.+.....  +...-..+..+.+|+.+..
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999998886656677777799999999866542  2222233344455554444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.92  E-value=1.6e-10  Score=120.21  Aligned_cols=243  Identities=25%  Similarity=0.241  Sum_probs=159.0

Q ss_pred             CCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccc
Q 035922          263 LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPS  342 (581)
Q Consensus       263 l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  342 (581)
                      +..++.+.+..|.+.+.            -..+..+ .++..|++.+|.+..... .+..+++|++|++++|.++...  
T Consensus        71 l~~l~~l~l~~n~i~~~------------~~~l~~~-~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--  134 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKI------------LNHLSKL-KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--  134 (414)
T ss_pred             hHhHHhhccchhhhhhh------------hcccccc-cceeeeeccccchhhccc-chhhhhcchheecccccccccc--
Confidence            66666666666655541            1112222 378888888888875422 2667888888888888887543  


Q ss_pred             cccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCc-ccccCCCCCcEEECCCCcccccCCcchhcccC
Q 035922          343 AIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIP-SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSS  421 (581)
Q Consensus       343 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~  421 (581)
                      .+..++.|+.|++++|.++..  ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+..  ...+..+..
T Consensus       135 ~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~  209 (414)
T KOG0531|consen  135 GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKK  209 (414)
T ss_pred             chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHH
Confidence            356677788888888888732  245557888888888888875433 2 4677788888888888752  223333444


Q ss_pred             CcceeEcCCCcccccCCccccCCCC--CCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEE
Q 035922          422 LSISLDLSRNHFTGSLPIEVGNLKN--LGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD  499 (581)
Q Consensus       422 L~~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  499 (581)
                      + ..+++..|.++..-+  +..+..  |+.+++++|++. .++..+..+..+..|++.+|++...  ..+...+.+..+.
T Consensus       210 l-~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~  283 (414)
T KOG0531|consen  210 L-VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELW  283 (414)
T ss_pred             H-HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhc
Confidence            4 455777777763221  222233  788888888887 4446677788888888888888643  2345566677777


Q ss_pred             CCCCcccc---ccchh-hhcCCCCCEEECcCCCCCCC
Q 035922          500 FAQNNLSG---EIPKF-LAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       500 ls~n~l~~---~~p~~-l~~l~~L~~L~ls~N~l~~~  532 (581)
                      ...|.+..   ..... ....+.++.+.+.+|.....
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  284 LNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             cCcchhcchhhhhccccccccccccccccccCccccc
Confidence            77777652   12221 45667788888888888765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.6e-09  Score=79.45  Aligned_cols=61  Identities=31%  Similarity=0.435  Sum_probs=40.3

Q ss_pred             CCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCC
Q 035922          469 TSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL  529 (581)
Q Consensus       469 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l  529 (581)
                      ++|++|++++|++....++.|..+++|+.|++++|.+....|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566666666666655555666667777777777777666666667777777777776654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=4.8e-10  Score=116.68  Aligned_cols=239  Identities=26%  Similarity=0.288  Sum_probs=171.0

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      .++.+.+..|.+.. +-..+..+++|+.|++.+|++.+. ...+..+++|++|++++|.|+...  .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence            67777788888774 223477789999999999999844 333677899999999999998543  35567779999999


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcc-hhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ-LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG  459 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  459 (581)
                      +|.+...  ..+..++.|+.+++++|.+...-+ . ...+.++ ..+++.+|.+..  ...+..+..+..+++..|.++.
T Consensus       149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l-~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISL-EELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             cCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccch-HHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence            9998843  346668899999999999883333 2 4667777 788999998872  2234445566667888888873


Q ss_pred             ccCccccCCCC--CcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCC--CC
Q 035922          460 EIPISLGSCTS--LEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARY--VP  535 (581)
Q Consensus       460 ~~p~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~--ip  535 (581)
                      .-+  +..+..  |+.+++++|++. .+++.+..+..+..|++++|++...  ..+...+.+..+...+|.+....  ..
T Consensus       223 ~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (414)
T KOG0531|consen  223 LEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ  297 (414)
T ss_pred             ccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence            222  223333  889999999997 4446677888999999999988754  33566677788888888776221  11


Q ss_pred             C--ccccCCcCcccccCCCCC
Q 035922          536 T--EGVIKNSSATSVMGNSKL  554 (581)
Q Consensus       536 ~--~~~~~~l~~l~~~gN~~l  554 (581)
                      .  .....+++...+.+||.-
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  298 EYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             cccccccccccccccccCccc
Confidence            1  345566777778887733

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4.3e-09  Score=77.19  Aligned_cols=61  Identities=33%  Similarity=0.427  Sum_probs=45.5

Q ss_pred             CCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcc
Q 035922          445 KNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNL  505 (581)
Q Consensus       445 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l  505 (581)
                      ++|++|++++|+++...+..|..+++|++|++++|.+....|+.|.++++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677777777777755556777778888888888887766667777888888888887764

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.75  E-value=5.1e-10  Score=115.68  Aligned_cols=197  Identities=21%  Similarity=0.221  Sum_probs=132.3

Q ss_pred             CCCCeEeccCCcccccC-CccCCCCCCCcEEeecCcccCCCCcccccCC-CCCcEEECCCCccc----------ccCCcc
Q 035922          348 QNLRMLGMSGNRFSGNI-PLSVGNLKMLIQLEVSENFLQGTIPSSLCQC-KSLIGINFSKNNLS----------GTIPPQ  415 (581)
Q Consensus       348 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ls~n~l~----------~~~p~~  415 (581)
                      ++++.|.+-.-.-.+.. |-.+..+.+|++|.+.+|.+...  ..+..+ ..|+.|-.. |.+.          |.+-..
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence            44444444433322222 66678889999999999987631  111111 133333222 2111          111111


Q ss_pred             hhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcc-cccCCCC
Q 035922          416 LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPS-SLRSLRG  494 (581)
Q Consensus       416 ~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~  494 (581)
                      + ....| ...+.+.|.+. .+..++.-++.|+.|||++|+++...  .+..|+.|+.|||+.|.+. .+|. ....+ .
T Consensus       161 ~-~Wn~L-~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~  233 (1096)
T KOG1859|consen  161 P-VWNKL-ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-K  233 (1096)
T ss_pred             h-hhhhH-hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-h
Confidence            1 12344 57888999988 67777888899999999999997332  7889999999999999998 4453 23344 4


Q ss_pred             CCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCC-CCCccccCCcCcccccCCCCCcc
Q 035922          495 LSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARY-VPTEGVIKNSSATSVMGNSKLCG  556 (581)
Q Consensus       495 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~-ip~~~~~~~l~~l~~~gN~~lcg  556 (581)
                      |+.|.+++|.++..  -.+.+|.+|+.||++||-|.+.. +-....+..|..+.++|||.-|.
T Consensus       234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            99999999999754  45789999999999999888641 11235677888999999997774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.52  E-value=4e-09  Score=109.19  Aligned_cols=180  Identities=29%  Similarity=0.293  Sum_probs=126.9

Q ss_pred             cccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccC----------CCCcccccCCCCCcEEECCCCcccc
Q 035922          341 PSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ----------GTIPSSLCQCKSLIGINFSKNNLSG  410 (581)
Q Consensus       341 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~ls~n~l~~  410 (581)
                      |-.+..+.+|+.|.+.++.+.. .-.-..--..|++|...+ .++          |.+-..+ .-..|...++++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence            5567788999999999998873 111111112344443321 111          1111100 0125778889999987 


Q ss_pred             cCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCc-cccCCCCCcEEECCCCcCcccCcccc
Q 035922          411 TIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSL  489 (581)
Q Consensus       411 ~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l  489 (581)
                      .+...+.-++.+ +.|||++|+++.. . .+..++.|+.|||++|++. .+|. ....|. |+.|.+++|.++..  ..+
T Consensus       178 ~mD~SLqll~al-e~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi  250 (1096)
T KOG1859|consen  178 LMDESLQLLPAL-ESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGI  250 (1096)
T ss_pred             hHHHHHHHHHHh-hhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhH
Confidence            667777777788 8999999999843 2 6788999999999999998 5554 233455 99999999999743  357


Q ss_pred             cCCCCCCEEECCCCccccccc-hhhhcCCCCCEEECcCCCCCC
Q 035922          490 RSLRGLSVWDFAQNNLSGEIP-KFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       490 ~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      .++.+|+.||+++|-+.+.-. +.+..|..|+.|+|.+|++-.
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            899999999999998876322 346678899999999999864

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=9.6e-09  Score=95.81  Aligned_cols=158  Identities=18%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             CCcEEEccCCCCCCc-CCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccc-cCcccCChhhhcCCCCCcee
Q 035922          192 SIIRLSLTYNNIARS-IPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN-RMQGNIPLDFGFTLPNLQHF  269 (581)
Q Consensus       192 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L  269 (581)
                      .|+++||+...|+.. +...++.+.+|+.|.+.++++.+.+...+.+..+|+.++++.+ .++...-..+...+..|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            456666665555422 1123445566666666666666666666666666666666543 23322222233334444444


Q ss_pred             eccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCc---ccccCchhhcCCCCCCEEEeecC-cCccccccccc
Q 035922          270 GIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK---IFGSIPPGIGKLVNLRRLYVWNN-KLSGTIPSAIG  345 (581)
Q Consensus       270 ~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~~~~l~  345 (581)
                      +++.+.+..          ..+...+.+..++|+.|+++++.   ....+..-...+++|..|||++| .++......|.
T Consensus       266 NlsWc~l~~----------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  266 NLSWCFLFT----------EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             CchHhhccc----------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            444332210          01111122233466666666543   11112222345566666666655 33333333444


Q ss_pred             CCCCCCeEeccCCc
Q 035922          346 DLQNLRMLGMSGNR  359 (581)
Q Consensus       346 ~l~~L~~L~Ls~n~  359 (581)
                      +++.|++|.++.|.
T Consensus       336 kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCY  349 (419)
T ss_pred             hcchheeeehhhhc
Confidence            55555555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=9.1e-09  Score=95.96  Aligned_cols=58  Identities=26%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             CCcEEEccCCccccc-CchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922          301 TLASLFLDNNKIFGS-IPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN  358 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  358 (581)
                      .|+++||++..++.. +...+..|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            466666665555421 2223445555556666555555555555555555555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=4.5e-08  Score=80.97  Aligned_cols=59  Identities=22%  Similarity=0.333  Sum_probs=27.5

Q ss_pred             CCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922          446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      .++.|++++|.++ .+|..+..++.|+.|+++.|++. ..|..+..+.++-.||.-.|.+.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            4444444444444 44444444455555555555444 33333344444445555444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=1.2e-07  Score=88.69  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=40.0

Q ss_pred             CCCCCCEEEccCCcCcc--cCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcC-CCccCCCCcc
Q 035922          141 RCSNIILMDLSVNQLLG--NIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSI-PDTLGYLENL  217 (581)
Q Consensus       141 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L  217 (581)
                      .++.++.+||.+|.++.  .+-..+.++|.|++|+++.|.+...|-..-....+|++|-|.+..+.-.- ...+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34556666666666552  22223455666666666666555332211123345555555555443211 1223344455


Q ss_pred             cccccCCc
Q 035922          218 SFLSLGGN  225 (581)
Q Consensus       218 ~~L~l~~n  225 (581)
                      ++|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=7e-07  Score=82.52  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=17.6

Q ss_pred             CCCCcEEECCCCCCCCCCch----hccCCCCCCEEEccC
Q 035922           94 LSFLRRLHLDNNNFTHAIPP----EIGRLRRLRGLTLNN  128 (581)
Q Consensus        94 l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~  128 (581)
                      +..+..++||+|.|...-.+    .+.+-++|+..+++.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            44556666666666533222    233445555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=1.9e-07  Score=77.30  Aligned_cols=83  Identities=23%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             CCCCeEeccCCcccccCCccC-CCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCccee
Q 035922          348 QNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISL  426 (581)
Q Consensus       348 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L  426 (581)
                      ..|+..+|++|.+. .+|..| ..++.++.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|.-+..+.++ ..|
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l-~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL-DML  128 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH-HHh
Confidence            33444444444444 222222 22334444444444444 34444555555555555555554 444444444444 445


Q ss_pred             EcCCCccc
Q 035922          427 DLSRNHFT  434 (581)
Q Consensus       427 ~Ls~n~l~  434 (581)
                      +..+|.+.
T Consensus       129 ds~~na~~  136 (177)
T KOG4579|consen  129 DSPENARA  136 (177)
T ss_pred             cCCCCccc
Confidence            55555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.03  E-value=2.1e-05  Score=79.22  Aligned_cols=57  Identities=19%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             hcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922          320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN  382 (581)
Q Consensus       320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  382 (581)
                      +..+.+++.|++++|.++ .+|. +  .++|+.|.++++.-...+|..+  .++|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            344567777777777666 4441 1  2357777776643323444433  245666666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=1.7e-06  Score=81.15  Aligned_cols=84  Identities=26%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             CCCCCEEEeecCcCcc--cccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCC-CcccccCCCCCc
Q 035922          323 LVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT-IPSSLCQCKSLI  399 (581)
Q Consensus       323 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~  399 (581)
                      ++.++.+||.+|.++.  .+...+.++|.|+.|+++.|.+...+...-....+|+.|.+.+..+.-. ....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4555666666665542  2223344556666666666655533322112344555555555443311 112333445555


Q ss_pred             EEECCCC
Q 035922          400 GINFSKN  406 (581)
Q Consensus       400 ~L~ls~n  406 (581)
                      +|.++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            5555555

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.98  E-value=8.6e-06  Score=54.53  Aligned_cols=37  Identities=51%  Similarity=0.921  Sum_probs=28.3

Q ss_pred             HhHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCccccCC
Q 035922           44 ETDREALLEFKSKITVDPFGVLGSWNES--SHFCKWHES   80 (581)
Q Consensus        44 ~~~~~~ll~~k~~~~~~~~~~l~~w~~~--~~~c~w~~~   80 (581)
                      ++|++||++||+++..+|.+.+.+|+..  .++|.|.|.
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV   40 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGV   40 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTE
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccE
Confidence            5799999999999976777899999887  799999873

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=2.1e-06  Score=79.46  Aligned_cols=89  Identities=17%  Similarity=0.312  Sum_probs=50.8

Q ss_pred             hccCCCCCCEEEccCCCCCCCCc----ccCcCCCCCCEEEccCCcCccc----CC-------cccCCCCCCCEEECCCCc
Q 035922          114 EIGRLRRLRGLTLNNNSIGGEIP----ATMSRCSNIILMDLSVNQLLGN----IP-------PEFGSLSKIKDLRSFMNN  178 (581)
Q Consensus       114 ~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~----~p-------~~l~~l~~L~~L~L~~n~  178 (581)
                      .+..+..+..++||+|.|...-.    ..+.+-.+|++.+++.-. +|.    ++       ..+-+|++|+..+|++|.
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            34457788888888888864322    234455677777776422 221    11       233456666666666666


Q ss_pred             ccccCCcc----CcCCCCCcEEEccCCCC
Q 035922          179 LTGSIPSS----LGNLSSIIRLSLTYNNI  203 (581)
Q Consensus       179 l~~~~p~~----l~~l~~L~~L~l~~n~l  203 (581)
                      +....|+.    +++-+.|++|.+++|.+
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            66555443    34445566666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=1.2e-05  Score=53.97  Aligned_cols=36  Identities=33%  Similarity=0.528  Sum_probs=15.4

Q ss_pred             CCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCc
Q 035922          120 RLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL  156 (581)
Q Consensus       120 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  156 (581)
                      +|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 33333444444444444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.85  E-value=6.7e-05  Score=75.62  Aligned_cols=52  Identities=21%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN  358 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  358 (581)
                      .++.|++++|.++ .+|.   -..+|+.|.++++.--..+|..+.  ++|++|++++|
T Consensus        53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            5666666666554 3331   123466666665422224443331  35666666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.82  E-value=2.3e-05  Score=52.56  Aligned_cols=36  Identities=31%  Similarity=0.525  Sum_probs=18.2

Q ss_pred             CCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922          494 GLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG  530 (581)
Q Consensus       494 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  530 (581)
                      +|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33444555555555555555554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.53  E-value=0.00015  Score=64.57  Aligned_cols=101  Identities=18%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             cEEECCCCCCCCCCchhcc-CCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922           98 RRLHLDNNNFTHAIPPEIG-RLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM  176 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  176 (581)
                      +.++|.+..+...  +.++ -+.+...+||++|.+.. + +.|..+++|.+|.|++|+|+.+-|.--..+++|+.|.+.+
T Consensus        22 ~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccch--hhccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            5555655554311  1121 13455667777776652 2 3456666677777777777655444334455666666666


Q ss_pred             CcccccCC--ccCcCCCCCcEEEccCCCC
Q 035922          177 NNLTGSIP--SSLGNLSSIIRLSLTYNNI  203 (581)
Q Consensus       177 n~l~~~~p--~~l~~l~~L~~L~l~~n~l  203 (581)
                      |.+.. +-  .-+..+++|++|.+-+|..
T Consensus        98 Nsi~~-l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   98 NSIQE-LGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             cchhh-hhhcchhccCCccceeeecCCch
Confidence            66541 11  1133444455554444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.49  E-value=0.00017  Score=64.33  Aligned_cols=122  Identities=19%  Similarity=0.163  Sum_probs=85.2

Q ss_pred             ceeEcCCCcccccCCcccc-CCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCC
Q 035922          424 ISLDLSRNHFTGSLPIEVG-NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQ  502 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  502 (581)
                      +.+++.+.++. .+.. ++ -......+||++|.+. .+ ..|.+++.|.+|.|++|+|+.+-|.--.-+++|+.|.+.+
T Consensus        22 ~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            46677776655 1211 11 2346678999999886 22 3577888999999999999977776556678899999999


Q ss_pred             Cccccccc-hhhhcCCCCCEEECcCCCCCCCCCC----CccccCCcCcccccC
Q 035922          503 NNLSGEIP-KFLAGFKLLENVNLSYNDLGARYVP----TEGVIKNSSATSVMG  550 (581)
Q Consensus       503 n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~ip----~~~~~~~l~~l~~~g  550 (581)
                      |+|...-. +-+..+|.|++|.+-+|+.+.. --    ..-.+++++.+||.+
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhh
Confidence            98864211 3477889999999999988764 11    113467788888775

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=3.9e-05  Score=83.77  Aligned_cols=134  Identities=17%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             CCCcEEECCCCCCC-CCCchhcc-CCCCCCEEEccCCCCCCC-CcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922           95 SFLRRLHLDNNNFT-HAIPPEIG-RLRRLRGLTLNNNSIGGE-IPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD  171 (581)
Q Consensus        95 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (581)
                      .+|++||+++...- ..-|..++ .||.|+.|.+++-.+... .-....++++|+.||+|+++++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46777888775432 12222333 477888888877665422 223345677888888888777633  56777777777


Q ss_pred             EECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcC--C----CccCCCCcccccccCCccCCCC
Q 035922          172 LRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSI--P----DTLGYLENLSFLSLGGNMLSGT  230 (581)
Q Consensus       172 L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~--p----~~l~~l~~L~~L~l~~n~l~~~  230 (581)
                      |.+.+=.+.. ..-..+.++++|++||+|........  .    +.-..+|+|+.||.+++.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            7776655542 22234667778888888766543221  1    1112356666666666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=2.2e-05  Score=85.76  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=46.5

Q ss_pred             CCCCEEEccCCCC-CCCCcccCc-CCCCCCEEEccCCcCcc-cCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcE
Q 035922          119 RRLRGLTLNNNSI-GGEIPATMS-RCSNIILMDLSVNQLLG-NIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR  195 (581)
Q Consensus       119 ~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  195 (581)
                      .+|++||+++... ....|..++ .+|+|+.|.+++-.+.. ..-....++++|..||+++++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            3555566655422 222222222 25555555555544321 1112234455555555555555422  34455555555


Q ss_pred             EEccCCCCCC-cCCCccCCCCcccccccCCcc
Q 035922          196 LSLTYNNIAR-SIPDTLGYLENLSFLSLGGNM  226 (581)
Q Consensus       196 L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~  226 (581)
                      |.+.+=.+.. ..-..+.+|++|+.||+|...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            5554443322 111123345555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.14  E-value=0.0002  Score=66.61  Aligned_cols=92  Identities=21%  Similarity=0.313  Sum_probs=52.6

Q ss_pred             cCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCC--CCCCCCcccCcCCCCCCEEEccCCcCccc-CCccc
Q 035922           87 ISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNN--SIGGEIPATMSRCSNIILMDLSVNQLLGN-IPPEF  163 (581)
Q Consensus        87 i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l  163 (581)
                      +......+..|+.|++.+..++..  ..+..+++|+.|.++.|  .+++.++-....+++|++|++++|++... --..+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            333344455666666666665522  23456677788888877  55555555555667777777777776520 00123


Q ss_pred             CCCCCCCEEECCCCccc
Q 035922          164 GSLSKIKDLRSFMNNLT  180 (581)
Q Consensus       164 ~~l~~L~~L~L~~n~l~  180 (581)
                      ..+.+|..|++.+|..+
T Consensus       113 ~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhcchhhhhcccCCcc
Confidence            44555566666665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.10  E-value=0.0018  Score=55.20  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=43.7

Q ss_pred             cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922           90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI  169 (581)
Q Consensus        90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (581)
                      .+.+.++|+.+.+.. .+...-...|.++++|+.+++..+ +......+|..+++|+.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555666666653 344344445666666666666553 4433344555665666666654 3332333345556666


Q ss_pred             CEEECCCCcccccCCccCcCCCCCcEEEcc
Q 035922          170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLT  199 (581)
Q Consensus       170 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  199 (581)
                      +.+++..+ +...-...+.++ +|+.+.+.
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            66665443 332223334444 55555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.04  E-value=3.6e-05  Score=75.77  Aligned_cols=236  Identities=18%  Similarity=0.107  Sum_probs=129.0

Q ss_pred             hhhhcccCCcEEEccCCc-ccccCch-hhcCCCCCCEEEeecC-cCcccc-cccccCCCCCCeEeccCCccccc--CCcc
Q 035922          294 CISNFSTTLASLFLDNNK-IFGSIPP-GIGKLVNLRRLYVWNN-KLSGTI-PSAIGDLQNLRMLGMSGNRFSGN--IPLS  367 (581)
Q Consensus       294 ~~~~~~~~L~~L~L~~n~-l~~~~p~-~l~~l~~L~~L~L~~n-~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~--~~~~  367 (581)
                      .+..+.++|++|++..|. ++...-. ....+++|++|+++++ ++++.- -....++..++.+.+.+|.-.+.  +-..
T Consensus       184 sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~  263 (483)
T KOG4341|consen  184 SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA  263 (483)
T ss_pred             HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH
Confidence            344444567777776643 3322212 2346788888888887 344321 12234566677776666532110  0001


Q ss_pred             CCCCCCCcEEeecCcc-cCCCCc-ccccCCCCCcEEECCCCcccccC-Ccchh-cccCCcceeEcCCCcc-cccCCccc-
Q 035922          368 VGNLKMLIQLEVSENF-LQGTIP-SSLCQCKSLIGINFSKNNLSGTI-PPQLF-GLSSLSISLDLSRNHF-TGSLPIEV-  441 (581)
Q Consensus       368 ~~~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~-p~~~~-~l~~L~~~L~Ls~n~l-~~~~p~~l-  441 (581)
                      -+.+..+..+++..|. ++...- ..-..+..|++++.+++.-.+.. -..++ +..++ +.+-++.++. +..-...+ 
T Consensus       264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L-~~l~l~~c~~fsd~~ft~l~  342 (483)
T KOG4341|consen  264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL-QVLELSGCQQFSDRGFTMLG  342 (483)
T ss_pred             hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce-EEEeccccchhhhhhhhhhh
Confidence            1234455666665553 332211 11124667788887776542222 12222 33455 7777777753 21111122 


Q ss_pred             cCCCCCCeeeccCCcCc--cccCccccCCCCCcEEECCCCcCcccC-----cccccCCCCCCEEECCCCccc-cccchhh
Q 035922          442 GNLKNLGVLDISGNLLS--GEIPISLGSCTSLEKLLMQGNKFYGPI-----PSSLRSLRGLSVWDFAQNNLS-GEIPKFL  513 (581)
Q Consensus       442 ~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~ls~n~l~-~~~p~~l  513 (581)
                      .+.+.|+.+++..+...  +.+...=.+++.|+.|.+++|......     ...-..+..|+.+.++++... ...-+.+
T Consensus       343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l  422 (483)
T KOG4341|consen  343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL  422 (483)
T ss_pred             cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence            35678888888887543  112222247888999999888653221     122245677888899888754 3444567


Q ss_pred             hcCCCCCEEECcCCCCC
Q 035922          514 AGFKLLENVNLSYNDLG  530 (581)
Q Consensus       514 ~~l~~L~~L~ls~N~l~  530 (581)
                      ..++.|+.+++-+++-.
T Consensus       423 ~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  423 SICRNLERIELIDCQDV  439 (483)
T ss_pred             hhCcccceeeeechhhh
Confidence            78888888888877543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.95  E-value=0.0023  Score=54.53  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             hccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCC
Q 035922          114 EIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSI  193 (581)
Q Consensus       114 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  193 (581)
                      .|.++++|+.+.+.. .+...-..+|..+++|+.+++..+ +.......|.++++++.+.+.+ .+.......+..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            466667777777764 455444556667767777777664 4434444566666677776654 3332233345556666


Q ss_pred             cEEEccCCCCCCcCCCccCCCCcccccccCC
Q 035922          194 IRLSLTYNNIARSIPDTLGYLENLSFLSLGG  224 (581)
Q Consensus       194 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  224 (581)
                      +.+++..+ +.......|.+. +|+.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            66666543 333333444444 555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.00042  Score=64.49  Aligned_cols=91  Identities=16%  Similarity=0.172  Sum_probs=54.0

Q ss_pred             CchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCC--cCcccCCcccCCCCCCCEEECCCCcccccCCcc--
Q 035922          111 IPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVN--QLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSS--  186 (581)
Q Consensus       111 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--  186 (581)
                      +..-...+..|+.|++.+..++..  ..+-.+++|++|.+|.|  ++.+-++--...+++|+++++++|++.-  ++.  
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence            333344556666666666666522  24556777888888887  5554444444555777777777777652  222  


Q ss_pred             -CcCCCCCcEEEccCCCCCC
Q 035922          187 -LGNLSSIIRLSLTYNNIAR  205 (581)
Q Consensus       187 -l~~l~~L~~L~l~~n~l~~  205 (581)
                       +..+.+|..|++.+|..+.
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcchhhhhcccCCccc
Confidence             3445556666666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.09  E-value=0.00022  Score=70.38  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=15.4

Q ss_pred             CCcEEECCCCCCCCC--CchhccCCCCCCEEEccCC
Q 035922           96 FLRRLHLDNNNFTHA--IPPEIGRLRRLRGLTLNNN  129 (581)
Q Consensus        96 ~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n  129 (581)
                      .|+.|.+.++.-.+.  +-..-.+++++++|++.++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc  174 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC  174 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcc
Confidence            455555555432221  1112234555555555555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.00021  Score=66.81  Aligned_cols=100  Identities=19%  Similarity=0.207  Sum_probs=62.9

Q ss_pred             CCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCC-cccCCCCCCCEE
Q 035922           94 LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIP-PEFGSLSKIKDL  172 (581)
Q Consensus        94 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L  172 (581)
                      +.+.+.|+.-+++++++  ....+++.|++|.||-|+|+..  ..+..|++|++|+|..|.|...-. ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44556677777777643  2345778888888888888743  346777888888888887753211 235677777777


Q ss_pred             ECCCCcccccCCcc-----CcCCCCCcEEE
Q 035922          173 RSFMNNLTGSIPSS-----LGNLSSIIRLS  197 (581)
Q Consensus       173 ~L~~n~l~~~~p~~-----l~~l~~L~~L~  197 (581)
                      .|..|.-.|.-+..     +.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77777655544322     33455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.00031  Score=65.63  Aligned_cols=21  Identities=33%  Similarity=0.274  Sum_probs=10.8

Q ss_pred             cCCCCcccccccCCccCCCCC
Q 035922          211 LGYLENLSFLSLGGNMLSGTI  231 (581)
Q Consensus       211 l~~l~~L~~L~l~~n~l~~~~  231 (581)
                      +.++++|+.|.|..|.-.|.-
T Consensus        84 LknlpsLr~LWL~ENPCc~~a  104 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEA  104 (388)
T ss_pred             HhcCchhhhHhhccCCccccc
Confidence            345555555555555544433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.44  E-value=0.002  Score=68.66  Aligned_cols=63  Identities=21%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             CCCCCCeEeccCCc-ccccCCccCC-CCCCCcEEeecCcc-cCCC-CcccccCCCCCcEEECCCCcc
Q 035922          346 DLQNLRMLGMSGNR-FSGNIPLSVG-NLKMLIQLEVSENF-LQGT-IPSSLCQCKSLIGINFSKNNL  408 (581)
Q Consensus       346 ~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~ls~n~l  408 (581)
                      .+++|+.|+++++. ++...-..+. .+++|+.|.+.+|. ++.. +-.....++.|++|++++|..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            44555566665555 3322111122 25556666555554 3322 111223355566666665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.40  E-value=0.0001  Score=77.13  Aligned_cols=36  Identities=28%  Similarity=0.275  Sum_probs=17.2

Q ss_pred             CcEEEccCCcccccCc----hhhcCCCCCCEEEeecCcCc
Q 035922          302 LASLFLDNNKIFGSIP----PGIGKLVNLRRLYVWNNKLS  337 (581)
Q Consensus       302 L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~  337 (581)
                      +..+.+.+|.+.....    ..+...+.|+.|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            5556666665553321    22333445555555555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.27  E-value=0.0091  Score=33.21  Aligned_cols=18  Identities=39%  Similarity=0.619  Sum_probs=8.7

Q ss_pred             CCEEECCCCccccccchhh
Q 035922          495 LSVWDFAQNNLSGEIPKFL  513 (581)
Q Consensus       495 L~~L~ls~n~l~~~~p~~l  513 (581)
                      |+.||+++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555554 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.24  E-value=0.0088  Score=33.26  Aligned_cols=12  Identities=42%  Similarity=0.493  Sum_probs=5.6

Q ss_pred             CCEEEccCCcCc
Q 035922          145 IILMDLSVNQLL  156 (581)
Q Consensus       145 L~~L~Ls~n~l~  156 (581)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.63  E-value=0.0047  Score=65.81  Aligned_cols=131  Identities=23%  Similarity=0.131  Sum_probs=75.5

Q ss_pred             CCCCCCEEEeecCcCccc--ccccccCCCCCCeEeccCC-cccccC----CccCCCCCCCcEEeecCcc-cCCCCccccc
Q 035922          322 KLVNLRRLYVWNNKLSGT--IPSAIGDLQNLRMLGMSGN-RFSGNI----PLSVGNLKMLIQLEVSENF-LQGTIPSSLC  393 (581)
Q Consensus       322 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~  393 (581)
                      .++.|+.+.+..+.-...  +-.....++.|+.|+++++ ......    ......+++|+.++++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            357777777776633222  2234456778888888763 211111    1233457899999999988 5544333333


Q ss_pred             C-CCCCcEEECCCCc-ccccCC-cchhcccCCcceeEcCCCccccc--CCccccCCCCCCeeecc
Q 035922          394 Q-CKSLIGINFSKNN-LSGTIP-PQLFGLSSLSISLDLSRNHFTGS--LPIEVGNLKNLGVLDIS  453 (581)
Q Consensus       394 ~-l~~L~~L~ls~n~-l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls  453 (581)
                      . |++|++|.+.+|. ++..-- .....++.| ++|+++.+.....  +.....++++++.|.+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L-~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSL-RELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcc-cEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            3 8899999988777 443322 233445667 8899998865311  22223345555554433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.10  E-value=0.00032  Score=73.39  Aligned_cols=181  Identities=24%  Similarity=0.245  Sum_probs=105.6

Q ss_pred             cCCcEEEccCCcccccCch----hhcCC-CCCCEEEeecCcCccc----ccccccCCCCCCeEeccCCcccc----cCCc
Q 035922          300 TTLASLFLDNNKIFGSIPP----GIGKL-VNLRRLYVWNNKLSGT----IPSAIGDLQNLRMLGMSGNRFSG----NIPL  366 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~----~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~~~  366 (581)
                      ..|..|++++|.+.+.--.    .+... ..+++|++..|.+++.    +...+...+.++.++++.|.+..    .++.
T Consensus       115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~  194 (478)
T KOG4308|consen  115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ  194 (478)
T ss_pred             ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence            4789999999998743222    22232 5677888888887643    45566678899999999998742    1122


Q ss_pred             c----CCCCCCCcEEeecCcccCCC----CcccccCCCC-CcEEECCCCccccc----CCcchhcc-cCCcceeEcCCCc
Q 035922          367 S----VGNLKMLIQLEVSENFLQGT----IPSSLCQCKS-LIGINFSKNNLSGT----IPPQLFGL-SSLSISLDLSRNH  432 (581)
Q Consensus       367 ~----~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~-L~~L~ls~n~l~~~----~p~~~~~l-~~L~~~L~Ls~n~  432 (581)
                      .    +....++++|.+++|.++..    +...+...+. +.++++..|.+.+.    +...+..+ ..+ +.++++.|.
T Consensus       195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l-~~l~l~~ns  273 (478)
T KOG4308|consen  195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL-RVLDLSRNS  273 (478)
T ss_pred             hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh-hhhhhhcCC
Confidence            2    22456778888888776622    1122333444 56677777776533    12223333 334 567777777


Q ss_pred             cccc----CCccccCCCCCCeeeccCCcCccccC----ccccCCCCCcEEECCCCcC
Q 035922          433 FTGS----LPIEVGNLKNLGVLDISGNLLSGEIP----ISLGSCTSLEKLLMQGNKF  481 (581)
Q Consensus       433 l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l  481 (581)
                      |+..    +...+..++.++++.++.|.+...-.    ..+.....+..+.+.++..
T Consensus       274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~  330 (478)
T KOG4308|consen  274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK  330 (478)
T ss_pred             ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence            7643    33344556677777777777653221    1222334444555554443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.59  E-value=0.0021  Score=58.72  Aligned_cols=86  Identities=20%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             ccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCc
Q 035922          115 IGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSII  194 (581)
Q Consensus       115 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  194 (581)
                      +....+...||++.|++. ..-..|+.++.|..||++.|.+. -.|..++....++++++..|..+ ..|.+++..++++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            334444455555555443 22333444445555555555444 34444555555555555544444 4454555555555


Q ss_pred             EEEccCCCC
Q 035922          195 RLSLTYNNI  203 (581)
Q Consensus       195 ~L~l~~n~l  203 (581)
                      ++++-.|.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            554444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.65  E-value=0.0063  Score=55.67  Aligned_cols=79  Identities=20%  Similarity=0.162  Sum_probs=34.0

Q ss_pred             ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922          424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN  503 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n  503 (581)
                      +.||++.|++. ..-..+..++.+..||++.|++. ..|..++....++.+++..|..+ ..|.++...+.++.+++-.|
T Consensus        45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence            34444444443 22223333344444444444444 44444444444444444444443 33444444444444444444


Q ss_pred             cc
Q 035922          504 NL  505 (581)
Q Consensus       504 ~l  505 (581)
                      .+
T Consensus       122 ~~  123 (326)
T KOG0473|consen  122 EF  123 (326)
T ss_pred             cc
Confidence            43

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.33  E-value=0.19  Score=25.85  Aligned_cols=10  Identities=40%  Similarity=0.531  Sum_probs=3.2

Q ss_pred             CCEEEccCCc
Q 035922          145 IILMDLSVNQ  154 (581)
Q Consensus       145 L~~L~Ls~n~  154 (581)
                      |++|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3344444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.35  E-value=0.52  Score=27.19  Aligned_cols=13  Identities=38%  Similarity=0.534  Sum_probs=5.8

Q ss_pred             CCCEEECCCCccc
Q 035922          494 GLSVWDFAQNNLS  506 (581)
Q Consensus       494 ~L~~L~ls~n~l~  506 (581)
                      +|+.|+|++|++.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.35  E-value=0.52  Score=27.19  Aligned_cols=13  Identities=38%  Similarity=0.534  Sum_probs=5.8

Q ss_pred             CCCEEECCCCccc
Q 035922          494 GLSVWDFAQNNLS  506 (581)
Q Consensus       494 ~L~~L~ls~n~l~  506 (581)
                      +|+.|+|++|++.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.26  E-value=0.25  Score=27.91  Aligned_cols=16  Identities=25%  Similarity=0.501  Sum_probs=7.0

Q ss_pred             CCCCEEECCCCccccc
Q 035922          493 RGLSVWDFAQNNLSGE  508 (581)
Q Consensus       493 ~~L~~L~ls~n~l~~~  508 (581)
                      ++|+.|++++|.+++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3455555555555443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.07  E-value=0.12  Score=46.72  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=34.4

Q ss_pred             CeeeccCCcCccccCccccCCCCCcEEECCCCcCccc-Cccccc-CCCCCCEEECCCC-ccccccchhhhcCCCCCEEEC
Q 035922          448 GVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGP-IPSSLR-SLRGLSVWDFAQN-NLSGEIPKFLAGFKLLENVNL  524 (581)
Q Consensus       448 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~-~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L~l  524 (581)
                      +.+|-++..|..+--+.+..+++++.|.+.+|.-.+. --+-++ -.++|+.|+++.| +|+..--..+..+++|+.|.+
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            3444444444433333444444444444444432211 001111 2345666666655 344433344555555555555


Q ss_pred             cC
Q 035922          525 SY  526 (581)
Q Consensus       525 s~  526 (581)
                      .+
T Consensus       184 ~~  185 (221)
T KOG3864|consen  184 YD  185 (221)
T ss_pred             cC
Confidence            43

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.00  E-value=0.83  Score=26.30  Aligned_cols=13  Identities=46%  Similarity=0.721  Sum_probs=5.3

Q ss_pred             CCCEEEccCCCCC
Q 035922          120 RLRGLTLNNNSIG  132 (581)
Q Consensus       120 ~L~~L~Ls~n~l~  132 (581)
                      +|++|+|++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.00  E-value=0.83  Score=26.30  Aligned_cols=13  Identities=46%  Similarity=0.721  Sum_probs=5.3

Q ss_pred             CCCEEEccCCCCC
Q 035922          120 RLRGLTLNNNSIG  132 (581)
Q Consensus       120 ~L~~L~Ls~n~l~  132 (581)
                      +|++|+|++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.00  E-value=0.14  Score=46.18  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCc
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK  335 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  335 (581)
                      .++.++-++..+...--..+..++.++.|.+.+|.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            45566666666555444445555666666665553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	581
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-43
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-26
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-12
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-43
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-26
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-23
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  171 bits (434), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 157/541 (29%), Positives = 236/541 (43%), Gaps = 70/541 (12%)
Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMS- 140
           KL+G  S  I   + L+ L++ +N F   IPP                   GEIP  +S 
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 141 RCSNIILMDLSVNQLLGNIPPEFG----------------------SLSKIKDLRSF--- 175
            C  +  +DLS N   G +PP FG                      +L K++ L+     
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 176 MNNLTGSIPSSLGNLS-SIIRLSLTYNNIARSI-PDTLGYLEN-LSFLSLGGNMLSGTIP 232
            N  +G +P SL NLS S++ L L+ NN +  I P+     +N L  L L  N  +G IP
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 233 SSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIP 292
            ++ N S + +  +  N + G IP   G +L  L+   +  N              G IP
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLN-----------MLEGEIP 456
Query: 293 ECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
           + +  +  TL +L LD N + G IP G+    NL  + + NN+L+G IP  IG L+NL +
Sbjct: 457 QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF--------- 403
           L +S N FSGNIP  +G+ + LI L+++ N   GTIP+++ +    I  NF         
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 404 ----SKNNLSGT--------IPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLD 451
                K    G         I  +                 + G       N  ++  LD
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 452 ISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK 511
           +S N+LSG IP  +GS   L  L +  N   G IP  +  LRGL++ D + N L G IP+
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 512 FLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNS 571
            ++   +L  ++LS N+L    +P  G  +       + N  LCG       PRC  +N+
Sbjct: 696 AMSALTMLTEIDLSNNNLSGP-IPEMGQFETFPPAKFLNNPGLCG----YPLPRCDPSNA 750
Query: 572 S 572
Sbjct: 751 D 751

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 44/360 (12%)
Query: 196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI 255
           L ++ NN +  IP  LG    L  L + GN LSG    +I   + +   ++  N+  G I
Sbjct: 202 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 256 PLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGS 315
           P      L +LQ+  +  N FT           G IP+ +S    TL  L L  N  +G+
Sbjct: 261 P---PLPLKSLQYLSLAENKFT-----------GEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 316 IPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKM- 373
           +PP  G    L  L + +N  SG +P   +  ++ L++L +S N FSG +P S+ NL   
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 374 LIQLEVSEN---------------------FLQ-----GTIPSSLCQCKSLIGINFSKNN 407
           L+ L++S N                     +LQ     G IP +L  C  L+ ++ S N 
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 408 LSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGS 467
           LSGTIP                 N   G +P E+  +K L  L +  N L+GEIP  L +
Sbjct: 427 LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 468 CTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYN 527
           CT+L  + +  N+  G IP  +  L  L++   + N+ SG IP  L   + L  ++L+ N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 306 FLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGN--RFS 361
           FL N+ I GS+  G     +L  L +  N LSG  T  +++G    L+ L +S N   F 
Sbjct: 80  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 362 GNIPLSVGNLKM--LIQLEVSENFLQGT--IPSSLCQ-CKSLIGINFSKNNLSGTIPPQX 416
           G +    G LK+  L  L++S N + G   +   L   C  L  +  S N +SG +    
Sbjct: 139 GKVS---GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---D 192
Query: 417 XXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
                         N+F+  +P  +G+   L  LDISGN LSG+   ++ +CT L+ L +
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 477 QGNKFYGPIPS-SLRSLRGLSVWDFAQNNLSGEIPKFLAG 515
             N+F GPIP   L+SL+ LS+   A+N  +GEIP FL+G
Sbjct: 252 SSNQFVGPIPPLPLKSLQYLSL---AENKFTGEIPDFLSG 288

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  171 bits (434), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 157/541 (29%), Positives = 236/541 (43%), Gaps = 70/541 (12%)
Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMS- 140
           KL+G  S  I   + L+ L++ +N F   IPP                   GEIP  +S 
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 141 RCSNIILMDLSVNQLLGNIPPEFG----------------------SLSKIKDLRSF--- 175
            C  +  +DLS N   G +PP FG                      +L K++ L+     
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 176 MNNLTGSIPSSLGNLS-SIIRLSLTYNNIARSI-PDTLGYLEN-LSFLSLGGNMLSGTIP 232
            N  +G +P SL NLS S++ L L+ NN +  I P+     +N L  L L  N  +G IP
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 233 SSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIP 292
            ++ N S + +  +  N + G IP   G +L  L+   +  N              G IP
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLN-----------MLEGEIP 459
Query: 293 ECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
           + +  +  TL +L LD N + G IP G+    NL  + + NN+L+G IP  IG L+NL +
Sbjct: 460 QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF--------- 403
           L +S N FSGNIP  +G+ + LI L+++ N   GTIP+++ +    I  NF         
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 404 ----SKNNLSGT--------IPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLD 451
                K    G         I  +                 + G       N  ++  LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 452 ISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK 511
           +S N+LSG IP  +GS   L  L +  N   G IP  +  LRGL++ D + N L G IP+
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 512 FLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNS 571
            ++   +L  ++LS N+L    +P  G  +       + N  LCG       PRC  +N+
Sbjct: 699 AMSALTMLTEIDLSNNNLSGP-IPEMGQFETFPPAKFLNNPGLCG----YPLPRCDPSNA 753
Query: 572 S 572
Sbjct: 754 D 754

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 44/360 (12%)
Query: 196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI 255
           L ++ NN +  IP  LG    L  L + GN LSG    +I   + +   ++  N+  G I
Sbjct: 205 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 256 PLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGS 315
           P      L +LQ+  +  N FT           G IP+ +S    TL  L L  N  +G+
Sbjct: 264 P---PLPLKSLQYLSLAENKFT-----------GEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 316 IPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKM- 373
           +PP  G    L  L + +N  SG +P   +  ++ L++L +S N FSG +P S+ NL   
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 374 LIQLEVSEN---------------------FLQ-----GTIPSSLCQCKSLIGINFSKNN 407
           L+ L++S N                     +LQ     G IP +L  C  L+ ++ S N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 408 LSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGS 467
           LSGTIP                 N   G +P E+  +K L  L +  N L+GEIP  L +
Sbjct: 430 LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 468 CTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYN 527
           CT+L  + +  N+  G IP  +  L  L++   + N+ SG IP  L   + L  ++L+ N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 306 FLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGN--RFS 361
           FL N+ I GS+  G     +L  L +  N LSG  T  +++G    L+ L +S N   F 
Sbjct: 83  FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 362 GNIPLSVGNLKM--LIQLEVSENFLQGT--IPSSLCQ-CKSLIGINFSKNNLSGTIPPQX 416
           G +    G LK+  L  L++S N + G   +   L   C  L  +  S N +SG +    
Sbjct: 142 GKV---SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---D 195
Query: 417 XXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
                         N+F+  +P  +G+   L  LDISGN LSG+   ++ +CT L+ L +
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 477 QGNKFYGPIPS-SLRSLRGLSVWDFAQNNLSGEIPKFLAG 515
             N+F GPIP   L+SL+ LS+   A+N  +GEIP FL+G
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSL---AENKFTGEIPDFLSG 291

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 14/256 (5%)
Query: 316 IPPGIGKLVNLRRLYVWN-NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML 374
           IP  +  L  L  LY+   N L G IP AI  L  L  L ++    SG IP  +  +K L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFT 434
           + L+ S N L GT+P S+    +L+GI F  N +SG IP                RN  T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 435 GSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF---YGPIPSSLRS 491
           G +P    NL NL  +D+S N+L G+  +  GS  + +K+ +  N      G +  S ++
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KN 245
Query: 492 LRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGN 551
           L GL   D   N + G +P+ L   K L ++N+S+N+L    +P  G ++    ++   N
Sbjct: 246 LNGL---DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANN 301
Query: 552 SKLCGGIPKLQFPRCT 567
             LCG       P CT
Sbjct: 302 KCLCGS----PLPACT 313

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
           + YL N+ +L+LGGN L     S++   +++T   +  N++Q  +P      L NL+   
Sbjct: 59  IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115
Query: 271 IVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRL 329
           +V N                +P+ + +  T L  L+L +N++  S+P G+  KL NL RL
Sbjct: 116 LVENQLQS------------LPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRL 162
Query: 330 YVWNNKLSGTIPSAIGD-LQNLRMLGMSGNRF 360
            + NN+L  ++P  + D L  L+ L ++ N+ 
Sbjct: 163 DLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 150/369 (40%), Gaps = 68/369 (18%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
           N+  ++ S NQL    P    +L+K+ D+   MNN   +  + L NL+++  L+L +NN 
Sbjct: 64  NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 118
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
              I D L  L NL+ L L  N +S    S++   +S+   S   N++    PL     L
Sbjct: 119 ITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPL---ANL 172
Query: 264 PNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323
             L+   I  N  ++                     T L SL   NN+I    P GI  L
Sbjct: 173 TTLERLDISSNKVSDISVLAKL--------------TNLESLIATNNQISDITPLGI--L 216
Query: 324 VNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
            NL  L +  N+L   GT+ S    L NL  L ++ N+ S   PLS   L  L +L++  
Sbjct: 217 TNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
           N +    P  L    +L  +  ++N L    P                           +
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP---------------------------I 301
Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
            NLKNL  L +  N +S   P+S  S T L++L    NK      SSL +L  ++     
Sbjct: 302 SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAG 357
Query: 502 QNNLSGEIP 510
            N +S   P
Sbjct: 358 HNQISDLTP 366

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 150/369 (40%), Gaps = 68/369 (18%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
           N+  ++ S NQL    P    +L+K+ D+   MNN   +  + L NL+++  L+L +NN 
Sbjct: 64  NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 118
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
              I D L  L NL+ L L  N +S    S++   +S+   S   N++    PL     L
Sbjct: 119 ITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPL---ANL 172
Query: 264 PNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323
             L+   I  N  ++                     T L SL   NN+I    P GI  L
Sbjct: 173 TTLERLDISSNKVSDISVLAKL--------------TNLESLIATNNQISDITPLGI--L 216
Query: 324 VNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
            NL  L +  N+L   GT+ S    L NL  L ++ N+ S   PLS   L  L +L++  
Sbjct: 217 TNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
           N +    P  L    +L  +  ++N L    P                           +
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP---------------------------I 301
Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
            NLKNL  L +  N +S   P+S  S T L++L    NK      SSL +L  ++     
Sbjct: 302 SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 357
Query: 502 QNNLSGEIP 510
            N +S   P
Sbjct: 358 HNQISDLTP 366

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 150/369 (40%), Gaps = 68/369 (18%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
           N+  ++ S NQL    P    +L+K+ D+   MNN   +  + L NL+++  L+L +NN 
Sbjct: 64  NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 118
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
              I D L  L NL+ L L  N +S    S++   +S+   +   N++    PL     L
Sbjct: 119 ITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPL---ANL 172
Query: 264 PNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323
             L+   I  N  ++                     T L SL   NN+I    P GI  L
Sbjct: 173 TTLERLDISSNKVSDISVLAKL--------------TNLESLIATNNQISDITPLGI--L 216
Query: 324 VNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
            NL  L +  N+L   GT+ S    L NL  L ++ N+ S   PLS   L  L +L++  
Sbjct: 217 TNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
           N +    P  L    +L  +  ++N L    P                           +
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP---------------------------I 301
Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
            NLKNL  L +  N +S   P+S  S T L++L    NK      SSL +L  ++     
Sbjct: 302 SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 357
Query: 502 QNNLSGEIP 510
            N +S   P
Sbjct: 358 HNQISDLTP 366

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	581
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-122
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-120
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-112
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  376 bits (967), Expect = e-122
 Identities = 152/517 (29%), Positives = 233/517 (45%), Gaps = 34/517 (6%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMS 140
           +  G I P    L  L+ L L  N FT  IP  + G    L GL L+ N   G +P    
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 141 RCSNIILMDLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLS-SIIRLSL 198
            CS +  + LS N   G +P +    +  +K L    N  +G +P SL NLS S++ L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 199 TYNNIARSIPDTLG--YLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP 256
           + NN +  I   L       L  L L  N  +G IP ++ N S + +  +  N + G IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 257 LDFGFTLPNLQHFGIVFNNFT-------------ELLLLNDNNFGGLIPECISNFSTTLA 303
              G +L  L+   +  N                E L+L+ N+  G IP  +SN  T L 
Sbjct: 436 SSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLN 493

Query: 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN 363
            + L NN++ G IP  IG+L NL  L + NN  SG IP+ +GD ++L  L ++ N F+G 
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

Query: 364 IPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKN--NLSGTIPPQLFGLSS 421
           IP ++         +++ NF+ G     +         + + N     G    QL  LS+
Sbjct: 554 IPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 422 LSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF 481
            +   +++   + G       N  ++  LD+S N+LSG IP  +GS   L  L +  N  
Sbjct: 610 RNP-CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 482 YGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIK 541
            G IP  +  LRGL++ D + N L G IP+ ++   +L  ++LS N+L    +P  G  +
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP-IPEMGQFE 727

Query: 542 NSSATSVMGNSKLCGGIPKLQFPRCTKNNSSNQKISR 578
                  + N  LCG       PRC  +N+      +
Sbjct: 728 TFPPAKFLNNPGLCG----YPLPRCDPSNADGYAHHQ 760

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  373 bits (959), Expect = e-120
 Identities = 141/531 (26%), Positives = 236/531 (44%), Gaps = 46/531 (8%)

Query: 37  AARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWH---------ESLKLA--- 84
           A+       +   L+ FK  +  D   +L  W+ + + C +           S+ L+   
Sbjct: 4   ASPSQSLYREIHQLISFKDVLP-DK-NLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKP 61

Query: 85  -----GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATM 139
                 ++S  + +L+ L  L L N++   ++         L  L L+ NS+ G +    
Sbjct: 62  LNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 140 S--RCSNIILMDLSVNQLLGNIP-PEFGSLSKIKDLRSFMNNLTGSIPSSL---GNLSSI 193
           S   CS +  +++S N L           L+ ++ L    N+++G+             +
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 194 IRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG 253
             L+++ N I+  +   +    NL FL +  N  S  IP  + + S++    +  N++ G
Sbjct: 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237

Query: 254 NIPLDFGFTLPNLQHFGIVFNNFT-----------ELLLLNDNNFGGLIPECISNFSTTL 302
           +       T   L+   I  N F            + L L +N F G IP+ +S    TL
Sbjct: 238 DFSRAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRMLGMSGNRFS 361
             L L  N  +G++PP  G    L  L + +N  SG +P   +  ++ L++L +S N FS
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 362 GNIPLSVGNLKM-LIQLEVSENFLQGTIPSSLCQC--KSLIGINFSKNNLSGTIPPQLFG 418
           G +P S+ NL   L+ L++S N   G I  +LCQ    +L  +    N  +G IPP L  
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 419 LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478
            S L   L LS N+ +G++P  +G+L  L  L +  N+L GEIP  L    +LE L++  
Sbjct: 417 CSELVS-LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
           N   G IPS L +   L+    + N L+GEIPK++   + L  + LS N  
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  350 bits (900), Expect = e-112
 Identities = 124/454 (27%), Positives = 199/454 (43%), Gaps = 26/454 (5%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
             +  I P++G+ S L+ L +  N  +      I     L+ L +++N   G IP     
Sbjct: 211 NFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LP 267

Query: 142 CSNIILMDLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
             ++  + L+ N+  G IP    G+   +  L    N+  G++P   G+ S +  L+L+ 
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 201 NNIARSIP-DTLGYLENLSFLSLGGNMLSGTIPSSIFN-RSSITTFSVVLNRMQGNIPLD 258
           NN +  +P DTL  +  L  L L  N  SG +P S+ N  +S+ T  +  N   G I  +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 259 FG-FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIP 317
                   LQ            L L +N F G IP  +SN S  L SL L  N + G+IP
Sbjct: 388 LCQNPKNTLQE-----------LYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIP 435

Query: 318 PGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377
             +G L  LR L +W N L G IP  +  ++ L  L +  N  +G IP  + N   L  +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSL 437
            +S N L G IP  + + ++L  +  S N+ SG IP +L    SL   LDL+ N F G++
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW-LDLNTNLFNGTI 554

Query: 438 PIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN--KFYGPIPSSLRSLRGL 495
           P  +          I+ N ++G+  + + +    ++    GN  +F G     L  L   
Sbjct: 555 PAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 496 SVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
           +  +       G           +  +++SYN L
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (273), Expect = 5e-25
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 1/176 (0%)

Query: 50  LLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTH 109
                + I    +  + +             L+  G  S  +  LS     ++ +  +  
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 110 AIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI 169
              P       +  L ++ N + G IP  +     + +++L  N + G+IP E G L  +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

Query: 170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGN 225
             L    N L G IP ++  L+ +  + L+ NN++  IP+  G  E         N
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNN 737

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  272 bits (699), Expect = 1e-87
 Identities = 86/288 (29%), Positives = 138/288 (47%), Gaps = 13/288 (4%)

Query: 284 DNNFGGLIPECISNFSTTLASLFLDNNKIFGS--IPPGIGKLVNLRRLYVWN-NKLSGTI 340
           +  + G++ +  +  +  + +L L    +     IP  +  L  L  LY+   N L G I
Sbjct: 35  NRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 341 PSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIG 400
           P AI  L  L  L ++    SG IP  +  +K L+ L+ S N L GT+P S+    +L+G
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 401 INFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460
           I F  N +SG IP      S L  S+ +SRN  TG +P    NL NL  +D+S N+L G+
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212

Query: 461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLE 520
             +  GS  + +K+ +  N     +   +   + L+  D   N + G +P+ L   K L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 521 NVNLSYNDL-GARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCT 567
           ++N+S+N+L G   +P  G ++    ++   N  LCG       P CT
Sbjct: 272 SLNVSFNNLCGE--IPQGGNLQRFDVSAYANNKCLCGSPL----PACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  222 bits (569), Expect = 3e-68
 Identities = 89/349 (25%), Positives = 141/349 (40%), Gaps = 66/349 (18%)

Query: 43  NETDREALLEFKSKITVDPFGVLGSWNESSHFC--KWH------------------ESLK 82
           N  D++ALL+ K  +       L SW  ++  C   W                     L 
Sbjct: 4   NPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 83  LAGS--ISPYIGNLSFLRRLHL-DNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATM 139
           L     I   + NL +L  L++   NN    IPP I +L +L  L + + ++ G IP  +
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 140 SRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR-LSL 198
           S+   ++ +D S N L G +PP   SL  +  +    N ++G+IP S G+ S +   +++
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLD 258
           + N +   IP T   L NL+F+ L  NML G       +                     
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS--------------------- 219

Query: 259 FGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP 318
                 N Q            + L  N+    + + +   S  L  L L NN+I+G++P 
Sbjct: 220 ----DKNTQK-----------IHLAKNSLAFDLGK-VGL-SKNLNGLDLRNNRIYGTLPQ 262

Query: 319 GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLS 367
           G+ +L  L  L V  N L G IP   G+LQ   +   + N+     PL 
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (380), Expect = 4e-41
 Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 10/198 (5%)

Query: 340 IPSAIGDLQNLR----MLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT--IPSSLC 393
           I   +G+   L             + G +  +      +  L++S   L     IPSSL 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 394 QCKSLIGINFSK-NNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI 452
               L  +     NNL G IPP +  L+ L   L ++  + +G++P  +  +K L  LD 
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY-LYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVW-DFAQNNLSGEIPK 511
           S N LSG +P S+ S  +L  +   GN+  G IP S  S   L      ++N L+G+IP 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 512 FLAGFKLLENVNLSYNDL 529
             A    L  V+LS N L
Sbjct: 193 TFANLN-LAFVDLSRNML 209

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  234 bits (600), Expect = 5e-69
 Identities = 80/466 (17%), Positives = 153/466 (32%), Gaps = 27/466 (5%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
           +L    +      S L  L +  N  +   P    +L  L+ L L +N +      T + 
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
           C+N+  + L  N +       F     +  L    N L+ +   +   L ++  L L+ N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 202 NIARSIPDTLGYLEN--LSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDF 259
            I     + L    N  L  L L  N +    P        +    +   ++  ++    
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 260 GFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFS-TTLASLFLDNNKIFGSIPP 318
              L N              L L+++               T L  L L  N +      
Sbjct: 216 CLELANTS---------IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 319 GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI---------PLSVG 369
               L  L   ++  N +      ++  L N+R L +  +    +I           S  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 370 NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP--QLFGLSSLSI-SL 426
            LK L  L + +N + G   +      +L  ++ S +  S           L+   +  L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 427 DLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPIS-LGSCTSLEKLLMQGNKFYGPI 485
           +L++N  +         L +L VLD+  N +  E+         ++ ++ +  NK+    
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 486 PSSLRSLRGLSVWDFAQNNLSG--EIPKFLAGFKLLENVNLSYNDL 529
            +S   +  L      +  L      P      + L  ++LS N++
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (553), Expect = 3e-62
 Identities = 74/469 (15%), Positives = 157/469 (33%), Gaps = 50/469 (10%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIG---RLRRLRGLTLNNNSIGGEIPAT 138
           ++          +  L  L L+N     ++  ++        +R L+L+N+ +      T
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 139 MS--RCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSS---- 192
               + +N+ ++DLS N L       F  L +++      NN+      SL  L +    
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 193 -----IIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVV 247
                  + S++  ++ +    +  +L+ L  L++  N + G   +      ++   S+ 
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 248 LNRMQGNIPLDFGF---TLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLAS 304
            +        +  F       L             L L  N    +  +  S     L  
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHI-----------LNLTKNKISKIESDAFSWL-GHLEV 409

Query: 305 LFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG- 362
           L L  N+I   +       L N+  +Y+  NK      ++   + +L+ L +        
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 363 -NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSS 421
            + P     L+ L  L++S N +       L   + L  ++   NNL+            
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA------------ 517

Query: 422 LSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF 481
                 L ++   G     +  L +L +L++  N               L+ + +  N  
Sbjct: 518 -----RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 482 YGPIPSSLRSLRGLSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDL 529
                S   +   L   +  +N ++    K F   F+ L  +++ +N  
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  190 bits (486), Expect = 6e-53
 Identities = 85/447 (19%), Positives = 144/447 (32%), Gaps = 85/447 (19%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
                  +   T  +P ++     +  L L +N +     A  +R S +  +D+  N + 
Sbjct: 6   HEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLEN 216
              P     L  +K L    N L+     +    +++  L L  N+I +   +     +N
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 217 LSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNF 276
           L  L L  N LS T   +                            L NLQ         
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQ-------------------------LENLQE-------- 149

Query: 277 TELLLLNDNNFGGLIPECISNFS-TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK 335
              LLL++N    L  E +  F+ ++L  L L +N+I    P     +  L  L++ N +
Sbjct: 150 ---LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 336 LSGTIPSAIGD---LQNLRMLGMSGNRFSGNIPLSVGNLKM--LIQLEVSENFLQGTIPS 390
           L  ++   +       ++R L +S ++ S     +   LK   L  L++S N L      
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL 450
           S      L       NN+       L GL ++   L+L R+                   
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY-LNLKRS---------------FTKQ 310

Query: 451 DISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIP 510
            IS   L      S      LE L                        +   N++ G   
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHL------------------------NMEDNDIPGIKS 346

Query: 511 KFLAGFKLLENVNLSYNDLGARYVPTE 537
               G   L+ ++LS +    R +  E
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNE 373

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  190 bits (484), Expect = 1e-52
 Identities = 87/472 (18%), Positives = 156/472 (33%), Gaps = 46/472 (9%)

Query: 82  KLAGSISPYIG---NLSFLRRLHLDNNNFTHAIPPEIGRLR--RLRGLTLNNNSIGGEIP 136
           +L  S++  +      + +R L L N+  +         L+   L  L L+ N++     
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 137 ATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRS---------FMNNLTGSIPSSL 187
            + +    +    L  N +          L  ++ L            + +L      S 
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 188 GNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS-GTIPSSIF---NRSSITT 243
             L  +  L++  N+I     +    L NL +LSL  +  S  T+ +  F     S +  
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLA 303
            ++  N++       F   L +L+            L L  N  G  +          + 
Sbjct: 386 LNLTKNKISKIESDAFS-WLGHLEV-----------LDLGLNEIGQELTGQEWRGLENIF 433

Query: 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFS 361
            ++L  NK           + +L+RL +    L    + PS    L+NL +L +S N  +
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 362 GNIPLSVGNLKMLIQLEVSENFLQ--------GTIPSSLCQCKSLIGINFSKNNLSGTIP 413
                 +  L+ L  L++  N L         G     L     L  +N   N       
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 414 PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLG-SCTSLE 472
                L  L I +DL  N+          N  +L  L++  NL++       G +  +L 
Sbjct: 554 EVFKDLFELKI-IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612

Query: 473 KLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEI----PKFLAGFKLLE 520
           +L M+ N F     S    +  ++        LS       P    GF +  
Sbjct: 613 ELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRL 664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 80  SLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSI-------- 131
           +LK   S       L  L  L L NNN  +     +  L +L  L L +N++        
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 132 GGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIK--DLRSFMNNLTGSIPSSLGN 189
            G     +   S++ +++L  N         F  L ++K  DL    NNL     S   N
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL--NNLNTLPASVFNN 582

Query: 190 LSSIIRLSLTYNNIARSIPDTLGY-LENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVL 248
             S+  L+L  N I        G    NL+ L +  N    T  S  +  + I      +
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642

Query: 249 NRMQGNI 255
             +  + 
Sbjct: 643 PELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  231 bits (592), Expect = 3e-68
 Identities = 77/483 (15%), Positives = 139/483 (28%), Gaps = 84/483 (17%)

Query: 80  SLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATM 139
           S     SI           ++   +NN T  +   + RL +LR   + N+    E     
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI--- 223

Query: 140 SRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLT 199
             C      +    Q       ++ +L  + D+  +       +P+ L  L  +  +++ 
Sbjct: 224 --CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 200 YNNIAR--------SIPDTLGYLENLSFLSLGGNML-SGTIPSSIFNRSSITTFSVVLNR 250
            N                     E +  + +G N L +  + +S+               
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK------------- 328

Query: 251 MQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNN 310
                       +  L             L    N   G +P    +    LASL L  N
Sbjct: 329 ------------MKKLGM-----------LECLYNQLEGKLPA-FGSE-IKLASLNLAYN 363

Query: 311 KIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSA--IGDLQNLRMLGMSGNRFSG----- 362
           +I   IP    G    +  L   +NKL   IP+      +  +  +  S N         
Sbjct: 364 QI-TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 363 --NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG-------TIP 413
              +  +      +  + +S N +             L  IN   N L+           
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 414 PQLFGLSSLSISLDLSRNHFTGSLP-IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLE 472
                   L+ S+DL  N  T          L  L  +D+S N  S   P    + ++L+
Sbjct: 482 ENFKNTYLLT-SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539

Query: 473 KL------LMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSY 526
                     QGN+     P  +     L+      N++     K       +  +++  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKD 596

Query: 527 NDL 529
           N  
Sbjct: 597 NPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  230 bits (588), Expect = 1e-67
 Identities = 67/526 (12%), Positives = 142/526 (26%), Gaps = 88/526 (16%)

Query: 41  AGNETDREALLEFKS-------KITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGN 93
           A    D  AL E                     +WN +     W     ++      + +
Sbjct: 26  AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVS------LNS 79

Query: 94  LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGG----EIPATMSRCSNIILMD 149
              +  L L+    +  +P  IG+L  L  L L ++          P  +S   +     
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 150 LSVNQLLGNIPPEFG--SLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSI 207
                              S +       +    SI  S        ++    NNI   +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FV 198

Query: 208 PDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQ 267
              +  L  L    +G +          +                               
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWE------------------------------ 228

Query: 268 HFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLR 327
                                        N    L  + + N      +P  +  L  ++
Sbjct: 229 -----------NENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 328 RLYVWNNKL--------SGTIPSAIGDLQNLRMLGMSGNRF-SGNIPLSVGNLKMLIQLE 378
            + V  N+              +     + ++++ +  N   +  +  S+  +K L  LE
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG-SL 437
              N L+G +P+       L  +N + N ++  IP    G +    +L  + N       
Sbjct: 337 CLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 438 PIEVGNLKNLGVLDISGNLLSG-------EIPISLGSCTSLEKLLMQGNKFYGPIPSSLR 490
             +  ++  +  +D S N +          +  +     ++  + +  N+          
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 491 SLRGLSVWDFAQNNLSG-------EIPKFLAGFKLLENVNLSYNDL 529
           +   LS  +   N L+        +  +      LL +++L +N L
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  227 bits (581), Expect = 1e-66
 Identities = 64/450 (14%), Positives = 144/450 (32%), Gaps = 51/450 (11%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
            +S  +  L+ LR+ ++ N+ F      E                             ++
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDL 251

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLT--------GSIPSSLGNLSSIIRLS 197
             +++     L  +P    +L +++ +    N               +       I  + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 198 LTYNNIAR-SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP 256
           + YNN+    +  +L  ++ L  L    N L G +P+   +   + + ++  N++   IP
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IP 369

Query: 257 LDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKI---- 312
            +F      +++           L    N    +     +   + ++++    N+I    
Sbjct: 370 ANFCGFTEQVEN-----------LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 313 ---FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG------- 362
              F  + P   K +N+  + + NN++S            L  + + GN  +        
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 363 NIPLSVGNLKMLIQLEVSENFLQGTIPS-SLCQCKSLIGINFSKNNLSGTIPPQLFGLSS 421
           +   +  N  +L  +++  N L              L+GI+ S N+ S   P Q    S+
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537

Query: 422 L-----SISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
           L         D   N      P  +    +L  L I  N +     ++     ++  L +
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK---VNEKITPNISVLDI 594

Query: 477 QGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506
           + N       S +       ++    +   
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  218 bits (557), Expect = 2e-63
 Identities = 96/474 (20%), Positives = 150/474 (31%), Gaps = 32/474 (6%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
            L    S    +   L+ L L               L  L  L L  N I        S 
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTY 200
            S++  +      L        G L  +K+L    N +    +P    NL+++  L L+ 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 201 NNIARSIPDTLGYLENLSF----LSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP 256
           N I       L  L  +      L L  N ++  I    F    +   ++  N    N+ 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 257 LDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSI 316
                 L  L+   +V   F     L   +   L   C         +     +     I
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY---LDYYLDDI 274

Query: 317 PPGIGKLVNLRRLYVWNNKLSGTIPSAI-GDLQNLRMLGMSGNRF--------------- 360
                 L N+    + +  +      +     Q+L ++     +F               
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 361 -SGNIPLSVGNLKMLIQLEVSENFL--QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF 417
             G    S  +L  L  L++S N L  +G    S     SL  ++ S N +  T+     
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 418 GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
           GL  L   LD   ++        V  +L+NL  LDIS               +SLE L M
Sbjct: 394 GLEQLEH-LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 477 QGNKFYGPI-PSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            GN F     P     LR L+  D +Q  L    P        L+ +N+S+N+ 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  208 bits (532), Expect = 6e-60
 Identities = 98/479 (20%), Positives = 174/479 (36%), Gaps = 41/479 (8%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSI-GGEIPATMS 140
            +          LS L++L     N        IG L+ L+ L + +N I   ++P   S
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 141 RCSNIILMDLSVNQLLGNIPPEFGSLSKIK----DLRSFMNNLTGSIPSSLGNLSSIIRL 196
             +N+  +DLS N++      +   L ++      L   +N +    P +   +  + +L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKL 205

Query: 197 SLTYNNIARSIPDTLGY-LENLSFLSLGGNMLSGTIPSSIFNRSSITTFS---------V 246
           +L  N  + ++  T    L  L    L             F++S++              
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 247 VLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL-----------LLLNDNNFGGLIPECI 295
            L+    +I   F   L N+  F +V      +           L L +  FG      +
Sbjct: 266 YLDYYLDDIIDLFNC-LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRML 353
            +         L      G        L +L  L +  N LS  G    +     +L+ L
Sbjct: 325 KSLKR------LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 354 GMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS-LCQCKSLIGINFSKNNLSGTI 412
            +S N     +  +   L+ L  L+   + L+     S     ++LI ++ S  +     
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 413 PPQLFGLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSL 471
                GLSSL + L ++ N F  +   ++   L+NL  LD+S   L    P +  S +SL
Sbjct: 438 NGIFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 472 EKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAG-FKLLENVNLSYNDL 529
           + L M  N F+       + L  L V D++ N++     + L      L  +NL+ ND 
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  203 bits (518), Expect = 7e-58
 Identities = 84/450 (18%), Positives = 133/450 (29%), Gaps = 39/450 (8%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
            + L L  N   H           L+ L L+   I           S++  + L+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLE 215
                 F  LS ++ L +   NL       +G+L ++  L++ +N I    +P+    L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 216 NLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVL----NRMQGNIPLDFGFTLPNLQHFGI 271
           NL  L L  N +     + +     +   ++ L    N M    P    F    L     
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLHK--- 204

Query: 272 VFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSI---PPGIGKLVNLRR 328
                   L L +N     + +        L    L   +              L  L  
Sbjct: 205 --------LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 329 LYVWNNKLS------GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382
           L +   +L+        I      L N+    +           S         LE+   
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNC 314

Query: 383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNH--FTGSLPIE 440
                    L   K L     +  +  G        L SL   LDLSRN   F G     
Sbjct: 315 KFGQFPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEF-LDLSRNGLSFKGCCSQS 368

Query: 441 VGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSS-LRSLRGLSVWD 499
                +L  LD+S N +   +  +      LE L  Q +        S   SLR L   D
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 500 FAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            +  +          G   LE + ++ N  
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  201 bits (513), Expect = 3e-57
 Identities = 88/495 (17%), Positives = 161/495 (32%), Gaps = 56/495 (11%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHA-IPPEIGRLRRLRGLTLNNNSIGGEIPATMS 140
            LA   +  IG+L  L+ L++ +N      +P     L  L  L L++N I       + 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 141 RCSNIILM----DLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIR 195
               + L+    DLS+N +   I P      ++  L    N  + ++    +  L+ +  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 196 LSLTYN------NIARSIPDTLGYLENLSFLSLGGNMLS---GTIPSSIFNRSSITTFSV 246
             L         N+ +     L  L NL+        L      I       +++++FS+
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 247 VLNRMQGNIPLDFGFTLPNL-----QHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTT 301
           V   ++      + F   +L     +           L  L   +  G       +   +
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PS 348

Query: 302 LASLFLDNNKI--FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
           L  L L  N +   G          +L+ L +  N +  T+ S    L+ L  L    + 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 360 FSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFG 418
                  SV  +L+ LI L++S    +           SL  +  + N+      P +F 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 419 -LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ 477
            L +L+  LDLS+       P    +L +L VL++S N              SL+ L   
Sbjct: 468 ELRNLTF-LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 478 GNKFYGPIPSSLRS---------------------------LRGLSVWDFAQNNLSGEIP 510
            N         L+                            ++           +    P
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

Query: 511 KFLAGFKLLENVNLS 525
               G  +L ++N++
Sbjct: 587 SDKQGMPVL-SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (433), Expect = 5e-46
 Identities = 82/419 (19%), Positives = 133/419 (31%), Gaps = 45/419 (10%)

Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
            +   +DLS N L       F S  +++ L      +      +  +LS +  L LT N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 203 IARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFT 262
           I          L +L  L      L+      I +  ++   +V  N +Q     ++   
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 263 LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFS---TTLASLFLDNNKIFGSIPPG 319
           L NL+H           L L+ N    +    +           SL L  N +   I PG
Sbjct: 148 LTNLEH-----------LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPG 195

Query: 320 IGKLVNLRRLYVWNNKLSGTIPS-AIGDLQNLRMLGMSGNRFSGNIPLSV---GNLKMLI 375
             K + L +L + NN  S  +    I  L  L +  +    F     L       L+ L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 376 QLEVSEN------FLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSIS--- 425
            L + E       +    I        ++   +     +         FG   L +    
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 426 ------------LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS--GEIPISLGSCTSL 471
                         L+     G       +L +L  LD+S N LS  G    S    TSL
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 472 EKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDL 529
           + L +  N     + S+   L  L   DF  +NL            + L  +++S+   
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (402), Expect = 7e-42
 Identities = 68/397 (17%), Positives = 128/397 (32%), Gaps = 31/397 (7%)

Query: 80  SLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSI------GG 133
           SL +  +    +  L   R +  +  N  +    +   L  L  LT+    +        
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 134 EIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSI 193
           +I    +  +N+    L    +      +F      + L              L +L   
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--- 327

Query: 194 IRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRSSITTFSVVLNRM 251
               LT+ +       +   L +L FL L  N LS  G    S F  +S+    +  N +
Sbjct: 328 --KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 252 QGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK 311
              +  +F   L  L+H           L    +N   +    +      L  L + +  
Sbjct: 386 IT-MSSNF-LGLEQLEH-----------LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 312 IFGSIPPGIGKLVNLRRLYVWNNKLSGTI-PSAIGDLQNLRMLGMSGNRFSGNIPLSVGN 370
              +       L +L  L +  N       P    +L+NL  L +S  +     P +  +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 371 LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSR 430
           L  L  L +S N              SL  +++S N++  +   +L    S    L+L++
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 431 NHFTGSLPIE--VGNLKNLGVLDISGNLLSGEIPISL 465
           N F  +   +  +  +K+   L +    +    P   
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (329), Expect = 2e-32
 Identities = 55/320 (17%), Positives = 102/320 (31%), Gaps = 43/320 (13%)

Query: 79  ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIG--GEIP 136
           + L+L          L       L   +           L  L  L L+ N +   G   
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 137 ATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSS-LGNLSSIIR 195
            +    +++  +DLS N ++  +   F  L +++ L    +NL      S   +L ++I 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI 255
           L +++ +   +       L +L  L + GN         IF                   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT------------------ 467

Query: 256 PLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGS 315
                  L NL             L L+      L P   ++  ++L  L + +N  F  
Sbjct: 468 ------ELRNLTF-----------LDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSL 509

Query: 316 IPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDL-QNLRMLGMSGNRFSGNIPLS--VGNLK 372
                  L +L+ L    N +  +    +     +L  L ++ N F+        +  +K
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 373 MLIQLEVSENFLQGTIPSSL 392
              QL V    ++   PS  
Sbjct: 570 DQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (329), Expect = 3e-32
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 11/243 (4%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355
            N   +  +L L  N +             L+ L +   ++      A   L +L  L +
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ 415
           +GN        +   L  L +L   E  L       +   K+L  +N + N +     P+
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 416 LFG-LSSLSISLDLSRNHFTGSLPIEVGNLKNLGV----LDISGNLLSGEIPISLGSCTS 470
            F  L++L   LDLS N        ++  L  + +    LD+S N ++  I         
Sbjct: 144 YFSNLTNLEH-LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIR 201

Query: 471 LEKLLMQGNKFYGPIPS-SLRSLRGLSVWDFAQNNLSGEI---PKFLAGFKLLENVNLSY 526
           L KL ++ N     +    ++ L GL V          E        +  + L N+ +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 527 NDL 529
             L
Sbjct: 262 FRL 264

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  220 bits (563), Expect = 1e-62
 Identities = 80/535 (14%), Positives = 168/535 (31%), Gaps = 74/535 (13%)

Query: 38  ARVAGNETDREALLEFKSKI----------TVDPFGVLGSWNESSHFCKWHESLKLAGSI 87
              A    D +AL      +          T++      +WN +     W +   +    
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVD--- 318

Query: 88  SPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIIL 147
              + N   +  L L        +P  IG+L  L+ L+   +S                +
Sbjct: 319 ---LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 148 MDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIA--- 204
            +   +++  +    F    +  +L   + +     P  +  +    R+SL    I    
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLT 434

Query: 205 ---RSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
                I   +  L  L  +    +  +    +  +  ++         +   N  L +  
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-----YAKQYENEELSWS- 488

Query: 262 TLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKI--------- 312
            L +L             + L +      +P+ + +    L SL +  N+          
Sbjct: 489 NLKDLTD-----------VELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLKAD 536

Query: 313 FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSA-IGDLQNLRMLGMSGNRFSGNIPLSVGNL 371
           +  +         ++  Y+  N L     SA +  +  L +L    N+   ++  + G  
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594

Query: 372 KMLIQLEVSENFLQGTIPSSLCQ-CKSLIGINFSKNNLSGTIPPQLF--GLSSLSISLDL 428
             L  L++  N ++  IP   C     + G+ FS N L   IP       +  +  S+D 
Sbjct: 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG-SVDF 651

Query: 429 SRNHFTG-----SLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF-- 481
           S N         S  ++     N   + +S N +         + + +  +++  N    
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 482 -----YGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL--LENVNLSYNDL 529
                  P   + ++   L+  D   N L+  +        L  L N+++SYN  
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  207 bits (527), Expect = 9e-58
 Identities = 70/455 (15%), Positives = 137/455 (30%), Gaps = 64/455 (14%)

Query: 89  PYIGNLSFLRRLHL------DNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRC 142
           P +  +    R+ L      +  N    I   I RL +L+ +   N+    +        
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----A 466

Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
            +    +    +   N    + +L  + D+  +       +P  L +L  +  L++  N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 203 IA---------RSIPDTLGYLENLSFLSLGGNMLSGTIPS-SIFNRSSITTFSVVLNRMQ 252
                        + D       +    +G N L     S S+     +     V N+++
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 253 GNIPLDFGFTLPNLQHFGIVFNNFTEL-------------LLLNDNNFGGLIPECISNFS 299
            ++   FG T   L    + +N   E+             L  + N    +     +   
Sbjct: 587 -HLE-AFG-TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 300 TTLASLFLDNNKIFGSIPPGIG------KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRML 353
             + S+    NKI GS    I       K +N   + +  N++             +  +
Sbjct: 644 YVMGSVDFSYNKI-GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 354 GMSGNRFS-------GNIPLSVGNLKMLIQLEVSENFLQGTIPSSL--CQCKSLIGINFS 404
            +S N  +            +  N  +L  +++  N L  ++           L  ++ S
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761

Query: 405 KNNLSGTIPPQLFGLSSL-----SISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459
            N  S + P Q    S L         D   N      P  +    +L  L I  N +  
Sbjct: 762 YNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR- 819

Query: 460 EIPISLGSCTSLEKLLMQGNKF-YGPIPSSLRSLR 493
           ++   L     L  L +  N      + S    + 
Sbjct: 820 KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  182 bits (464), Expect = 2e-49
 Identities = 61/367 (16%), Positives = 115/367 (31%), Gaps = 31/367 (8%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
           +         L N   +  LSL        +PD +G L  L  LS G +  + +      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECIS 296
              +        +R++ +    F      L       ++  +  +  +     +  +   
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLN-----LSDLLQDAINRNPEMKPIKKDSRI 423

Query: 297 NFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356
           +   T   +    N+I   I   I +L  L+ +Y  N+  +    +   +  N       
Sbjct: 424 SLKDT--QIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS-----D 475

Query: 357 GNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG------ 410
             +   N  LS  NLK L  +E+        +P  L     L  +N + N          
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 411 ---TIPPQLFGLSSLSISLDLSRNHFTGSLPIEV--GNLKNLGVLDISGNLLSGEIPISL 465
               +         + I   +  N+     P       +  LG+LD   N +   +  + 
Sbjct: 536 DWTRLADDEDTGPKIQI-FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591

Query: 466 GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL--LENVN 523
           G+   L  L +  N+              +    F+ N L   IP       +  + +V+
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650

Query: 524 LSYNDLG 530
            SYN +G
Sbjct: 651 FSYNKIG 657

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (548), Expect = 3e-62
 Identities = 83/473 (17%), Positives = 156/473 (32%), Gaps = 29/473 (6%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
            L    +     L  L  L L                 RL  L L  N +       +S 
Sbjct: 44  VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
              +  +      +         +   ++ L    N+++            +  L    N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 202 NIARSIPDTLGYLENLS--FLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDF 259
            I     + +  L+  +   L+L GN ++  I    F+ +   + +    +    I    
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 260 GF-TLPNLQHFGIVFNNFTEL---------------LLLNDNNFGGLIPECISNFSTTLA 303
              T+ +L        +  ++               + L  + F  +       F + L 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF-SGLQ 281

Query: 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN 363
            L L    +   +P G+  L  L++L +  NK       +  +  +L  L + GN     
Sbjct: 282 ELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 364 I-PLSVGNLKMLIQLEVSENFLQ--GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLS 420
           +    + NL+ L +L++S + ++        L     L  +N S N              
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 421 SLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479
            L + LDL+              NL  L VL++S +LL            +L+ L +QGN
Sbjct: 401 QLEL-LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 480 KFYGPI---PSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            F        +SL++L  L +   +  +LS          K++ +V+LS+N L
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  191 bits (488), Expect = 9e-54
 Identities = 89/460 (19%), Positives = 163/460 (35%), Gaps = 28/460 (6%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
            ++      + N   L  L+L +N+ +    P+     +L+ L   NN+I       MS 
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 142 CSNIILMDLSVNQL-LGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGN--LSSIIRLSL 198
                 + L++N   +  I P     +  + L          I   L N  + S+   + 
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 199 TYNNIARSIPDTLGYLENLS--FLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP 256
              +     P     L  +S   ++L  +       ++    S +    +    +   +P
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294

Query: 257 LDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSI 316
                 L  L+            L+L+ N F  L     SNF  +L  L +  N     +
Sbjct: 295 SGL-VGLSTLKK-----------LVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLEL 341

Query: 317 PPG-IGKLVNLRRLYVWNNKL--SGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKM 373
             G +  L NLR L + ++ +  S      + +L +L+ L +S N        +      
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 374 LIQLEVSENFLQGTIP-SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNH 432
           L  L+++   L+     S       L  +N S + L  +      GL +L   L+L  NH
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH-LNLQGNH 460

Query: 433 FTGSLPIEVG---NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSL 489
           F      +      L  L +L +S   LS     +  S   +  + +  N+       +L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 490 RSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
             L+G+ + + A N++S  +P  L        +NL  N L
Sbjct: 521 SHLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (438), Expect = 8e-47
 Identities = 76/438 (17%), Positives = 137/438 (31%), Gaps = 37/438 (8%)

Query: 91  IGNLSFLRRLHLD-NNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCS--NIIL 147
           + +L     L L+ N N    I P        + L          I   +   +  ++ L
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 148 MDLSVNQLLGNIPPEFGSLSK--IKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
                       P  F  L +  ++ +    +       ++    S +  L LT  ++  
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-S 291

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN 265
            +P  L  L  L  L L  N        S  N  S+T  S+  N  +  +       L N
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 266 LQHFGIVFNNFTEL---------------LLLNDNNFGGLIPECISNFSTTLASLFLDNN 310
           L+   +  ++                   L L+ N    L  E        L  L L   
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFT 410

Query: 311 KIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVG 369
           ++           L  L+ L + ++ L  +       L  L+ L + GN F         
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 370 NLKMLIQLEV---SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISL 426
           +L+ L +LE+   S   L      +    K +  ++ S N L+ +    L  L  +   L
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY--L 528

Query: 427 DLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIP 486
           +L+ NH +  LP  +  L     +++  N L               +   +  +      
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN-----IYFLEWYKENMQKLEDTE 583

Query: 487 ----SSLRSLRGLSVWDF 500
                +   LRG+ + D 
Sbjct: 584 DTLCENPPLLRGVRLSDV 601

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  165 bits (421), Expect = 2e-44
 Identities = 74/410 (18%), Positives = 136/410 (33%), Gaps = 29/410 (7%)

Query: 141 RCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
           +  N    +     L   IP    + ++  +     N L     ++   L ++  L LT 
Sbjct: 11  KEVNKTY-NCENLGL-NEIPGTLPNSTECLEFSF--NVLPTIQNTTFSRLINLTFLDLTR 66

Query: 201 NNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG 260
             I     DT      L  L L  N L     +++    ++     +   +     +   
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 261 FTLPNLQHFGIVFNNFTEL-------------LLLNDNNFGGLIPECISNF-STTLASLF 306
                L+   +  N+ + +             L   +N    L  E +S+    T  SL 
Sbjct: 127 N-QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 307 LDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIG--DLQNLRMLGMSGNRFSGNI 364
           L+ N I   I PG       + L     +    I   +    +Q+L +            
Sbjct: 186 LNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 365 PLSVGNLKM--LIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSL 422
           P     L    +  + + +++      ++      L  ++ +  +LS  +P  L GLS+L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303

Query: 423 SISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI-PISLGSCTSLEKLLMQGNKF 481
              L LS N F     I   N  +L  L I GN    E+    L +  +L +L +  +  
Sbjct: 304 K-KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 482 Y--GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
                    LR+L  L   + + N       +       LE ++L++  L
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (454), Expect = 5e-49
 Identities = 99/477 (20%), Positives = 158/477 (33%), Gaps = 39/477 (8%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGG-EIPATMS 140
            +          L+ L  L              IG+L  L+ L + +N I   ++PA  S
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 141 RCSNIILMDLSVNQLLGNIPPEFGSLSKIKD----LRSFMNNLTGSIPSSLGNLSSIIRL 196
             +N++ +DLS N +      +   L +       L   +N +   I         +  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

Query: 197 SLTYNNIARSIPDTLGY-LENLSFLSLGGNMLSGTIPSSIFNRS--------SITTFSVV 247
           +L  N  + +I  T    L  L    L            IF  S        +I  F + 
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 248 LNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL-----------LLLNDNNFGGLIPECIS 296
                 +  + F   L N+    +   +   L           L +            + 
Sbjct: 270 YTNDFSDDIVKFH-CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 297 NFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQ--NLRMLG 354
                L SL L  NK   SI      L +L  L +  N LS +   +  DL   +LR L 
Sbjct: 329 F----LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 355 MSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIP-SSLCQCKSLIGINFSKNNLSGTIP 413
           +S N     +  +   L+ L  L+   + L+     S+    + L+ ++ S  N      
Sbjct: 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 414 PQLFGLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLE 472
               GL+SL+  L ++ N F  +    V  N  NL  LD+S   L         +   L+
Sbjct: 442 GIFLGLTSLNT-LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 473 KLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            L M  N       S    L  LS  D + N +           K L   NL+ N +
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  177 bits (451), Expect = 1e-48
 Identities = 94/478 (19%), Positives = 155/478 (32%), Gaps = 41/478 (8%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
            L    S    N S L+ L L               L  L  L L  N I    P + S 
Sbjct: 43  PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTY 200
            +++  +     +L        G L  +K L    N +    +P+   NL++++ + L+Y
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 201 NNIARSIPDTLGYLENLSF----LSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP 256
           N I     + L +L         L +  N +   I    F    +   ++  N    NI 
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 257 LDFGFTLPNLQHFGIVFNNFTEL---------------------LLLNDNNFGGLIPECI 295
                 L  L    ++   F +                        L   N         
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355
              +  ++++ L    I       + K    + L +   +L    P+   DL  L+ L +
Sbjct: 282 HCLA-NVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTL 335

Query: 356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSL--CQCKSLIGINFSKNNLSGTIP 413
           + N+ S  I      L  L  L++S N L  +   S       SL  ++ S N     + 
Sbjct: 336 TMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS 392

Query: 414 PQLFGLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLE 472
               GL  L   LD   +            +L+ L  LDIS      +        TSL 
Sbjct: 393 ANFMGLEELQH-LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 473 KLLMQGNKFYGPIPSS-LRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            L M GN F     S+   +   L+  D ++  L             L+ +N+S+N+L
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (424), Expect = 6e-45
 Identities = 78/448 (17%), Positives = 148/448 (33%), Gaps = 27/448 (6%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHA-IPPEIGRLRRLRGLTLNNNSIGGEIPATMS 140
           KLA   S  IG L  L++L++ +N      +P     L  L  + L+ N I       + 
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 141 RCSNIILM----DLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIR 195
                  +    D+S+N +   I  +     K+ +L    N  + +I    L NL+ +  
Sbjct: 175 FLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 196 LSLTYN------NIARSIPDTLGYLENLSF--LSLGGNMLSGTIPSSIFNRSSITTFSVV 247
             L         N+    P  +  L +++     L                ++++  S+ 
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 248 LNRMQGNIPLDFGFTLPNL-----QHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTL 302
              ++    +   F   +L     Q       +   L  L      G I         +L
Sbjct: 294 GVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL-PSL 352

Query: 303 ASLFLDNNKI--FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
           + L L  N +   G          +LR L +  N     + +    L+ L+ L    +  
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTL 411

Query: 361 SGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-G 418
                 S   +L+ L+ L++S    +           SL  +  + N+        +F  
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 419 LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478
            ++L+  LDLS+             L  L +L++S N L            SL  L    
Sbjct: 472 TTNLTF-LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLS 506
           N+            + L+ ++   N+++
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  150 bits (380), Expect = 7e-39
 Identities = 64/446 (14%), Positives = 122/446 (27%), Gaps = 77/446 (17%)

Query: 95  SFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQ 154
           S  + + L  N               L+ L L+   I                       
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA---------------- 75

Query: 155 LLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYL 214
                   +  L  + +L    N +    P S   L+S+  L      +A      +G L
Sbjct: 76  --------WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127

Query: 215 ENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFN 274
             L  L++  N +      + F+                         L NL H  + +N
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFS------------------------NLTNLVHVDLSYN 163

Query: 275 NFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNN 334
                  +  N+   L             SL +  N I   I     + + L  L +  N
Sbjct: 164 YIQT---ITVNDLQFL-----RENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGN 214

Query: 335 KLSGTIPS-AIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML--------IQLEVSENFLQ 385
             S  I    + +L  L +  +    F     L +    ++         +  ++     
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLK 445
                      ++  ++ +  ++       +        SL + R            +L 
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQ-SLSIIRCQLKQ---FPTLDLP 328

Query: 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLS--VWDFAQN 503
            L  L ++ N  S  I     +  SL  L +  N        S   L   S    D + N
Sbjct: 329 FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 504 NLSGEIPKFLAGFKLLENVNLSYNDL 529
                +     G + L++++  ++ L
Sbjct: 387 GAI-IMSANFMGLEELQHLDFQHSTL 411

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  109 bits (274), Expect = 2e-25
 Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 14/244 (5%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355
            +  ++  ++ L  N +             L+ L +   ++      A   L +L  L +
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ 415
           +GN      P S   L  L  L   E  L       + Q  +L  +N + N +     P 
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 416 LF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLG----VLDISGNLLSGEIPISLGSCTS 470
            F  L++L   +DLS N+       ++  L+        LD+S N +   I         
Sbjct: 148 YFSNLTNLVH-VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205

Query: 471 LEKLLMQGNKFYGPIP-------SSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVN 523
           L +L ++GN     I        + L   R +      + NL    P  + G   +    
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 524 LSYN 527
               
Sbjct: 266 FRLT 269

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  162 bits (412), Expect = 4e-44
 Identities = 98/448 (21%), Positives = 177/448 (39%), Gaps = 47/448 (10%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
              L+   +  L   N T  +      L ++  L  +   I  +    +   +N+  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
           S NQ L +I P   +L+K+ D+    N +    P  L NL+++  L+L  N I  +  D 
Sbjct: 76  SNNQ-LTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI--TDIDP 129

Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
           L  L NL+ L L  N +S    S++   +S+   S   N++    PL     L  L+   
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS-FGNQVTDLKPLA---NLTTLERLD 183

Query: 271 IVFNNFTEL-----------LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
           I  N  +++           L+  +N    + P  +    T L  L L+ N++       
Sbjct: 184 ISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGIL-TNLDELSLNGNQL--KDIGT 238

Query: 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
           +  L NL  L + NN++S   P  +  L  L  L +  N+ S   PL+   L  L  LE+
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLEL 294

Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI 439
           +EN L+   P  +   K+L  +    NN+S   P  +  L+ L   L    N  +     
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ-RLFFYNNKVSD--VS 347

Query: 440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499
            + NL N+  L    N +S   P+   + T + +L +    +     +   ++   +   
Sbjct: 348 SLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405

Query: 500 FAQNNLSGEIPKFLAGFKLLENVNLSYN 527
                L    P  ++        ++++N
Sbjct: 406 NVTGALI--APATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (380), Expect = 1e-39
 Identities = 86/451 (19%), Positives = 156/451 (34%), Gaps = 48/451 (10%)

Query: 89  PYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILM 148
               +L  +  L  D           +  L  L  +  +NN +    P  +   + ++ +
Sbjct: 40  VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDI 95

Query: 149 DLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
            ++ NQ+         +L+ +  L  F N +T   P  L NL+++ RL L+ N I  S  
Sbjct: 96  LMNNNQI--ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDI 149

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQH 268
             L  L +L  LS G  +        + N +++    +  N++     L     L NL+ 
Sbjct: 150 SALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISVLA---KLTNLES 203

Query: 269 FGIVFNNFTEL-----------LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIP 317
                N  +++           L LN N    +    +++  T L  L L NN+I  S  
Sbjct: 204 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASL-TNLTDLDLANNQI--SNL 258

Query: 318 PGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377
             +  L  L  L +  N++S   P  +  L  L  L ++ N+     P+   NLK L  L
Sbjct: 259 APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYL 314

Query: 378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSL 437
            +  N +    P  +     L  + F  N +S      L  L++++  L    N  +   
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNIN-WLSAGHNQISDLT 369

Query: 438 PIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIP-SSLRSLRGLS 496
           P+   NL  +  L ++    +        + +    +         P   S   S     
Sbjct: 370 PL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

Query: 497 VWDFAQNNLSGEIPKFLAGFKLLENVNLSYN 527
           +      NL     +    F     +     
Sbjct: 428 I----TWNLPSYTNEVSYTFSQPVTIGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (345), Expect = 5e-35
 Identities = 93/399 (23%), Positives = 155/399 (38%), Gaps = 50/399 (12%)

Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
           S  I  D  +NQ+         +L++         N+T ++     +L  +  L      
Sbjct: 5   SATITQDTPINQI-----FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG 57

Query: 203 IARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFT 262
           I     D + YL NL+ ++   N L+   P  + N + +    +  N++    PL     
Sbjct: 58  I--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA---N 110

Query: 263 LPNLQHFGIVFNNFTEL-----------LLLNDNNFGGLIPECISNFSTTLASLFLDNNK 311
           L NL    +  N  T++           L L+ N    +    +S   T+L  L   N  
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA--LSGL-TSLQQLSFGNQV 167

Query: 312 IFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNL 371
              +    +  L  L RL + +NK+S    S +  L NL  L  + N+ S   PL  G L
Sbjct: 168 ---TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL--GIL 220

Query: 372 KMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRN 431
             L +L ++ N L      +L    +L  ++ + N +S   P  L GL+ L+  L L  N
Sbjct: 221 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE-LKLGAN 275

Query: 432 HFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIP-SSLR 490
             +   P+    L  L  L+++ N L    PI   +  +L  L +  N      P SSL 
Sbjct: 276 QISNISPL--AGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISPVSSLT 331

Query: 491 SLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            L+ L    F  N +S      LA    +  ++  +N +
Sbjct: 332 KLQRL---FFYNNKVSD--VSSLANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 1e-19
 Identities = 65/309 (21%), Positives = 108/309 (34%), Gaps = 54/309 (17%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
           + NL+ L RL + +N  +      + +L  L  L   NN I    P  +   +N+  + L
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
           + NQL         SL+ + DL    N ++   P  L  L+ +  L L  N I+   P  
Sbjct: 229 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 282

Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
           L  L  L+ L L  N L    P  I N  ++T  ++  N +    P+    +L  LQ   
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLF 337

Query: 271 IVFNNFTEL-----------LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
              N  +++           L    N    L P  ++N  T +  L L++     + P  
Sbjct: 338 FYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANL-TRITQLGLNDQAWT-NAPVN 393

Query: 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN--------------------- 358
               V++              P+ I D  +     ++ N                     
Sbjct: 394 YKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKG 452

Query: 359 --RFSGNIP 365
              FSG + 
Sbjct: 453 TTTFSGTVT 461

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  149 bits (379), Expect = 8e-41
 Identities = 62/390 (15%), Positives = 124/390 (31%), Gaps = 72/390 (18%)

Query: 85  GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSN 144
           GS   +  + S    L+   +         + + +R      N               SN
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SN 56

Query: 145 IILMDLSVNQLLGNIPPEFGSLSKIK----DLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
              ++    + L          ++      +LRS    L    P     LS +  +++  
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRS--VPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 201 NNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG 260
             +   +PDT+     L  L+L  N L   +P+SI +                       
Sbjct: 114 AGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIAS----------------------- 148

Query: 261 FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320
             L  L+            L +        +PE +++                       
Sbjct: 149 --LNRLRE-----------LSIRACPELTELPEPLASTD----------------ASGEH 179

Query: 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380
             LVNL+ L +    +  ++P++I +LQNL+ L +  +  S  +  ++ +L  L +L++ 
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237

Query: 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIE 440
                   P        L  +     +   T+P  +  L+ L   LDL        LP  
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK-LDLRGCVNLSRLPSL 296

Query: 441 VGNLKNLGVLDISGNLLSG---EIPISLGS 467
           +  L    ++ +  +L +      P++  +
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (369), Expect = 2e-39
 Identities = 63/356 (17%), Positives = 118/356 (33%), Gaps = 40/356 (11%)

Query: 65  LGSWNESSHFCKWHESLKLAGS--ISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLR 122
           +GS +   H     E+L   GS  + PY   LS  +R +  + N  H            +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-SAWRQANSNNPQ 59

Query: 123 GLTLNNNSIGGEIPATMSRCSNIILM--DLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLT 180
             T    ++       +   +    +  +L    L    P +   LS ++ +      L 
Sbjct: 60  IETRTGRALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 181 GSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSS 240
             +P ++   + +  L+L  N + R++P ++  L  L  LS+        +P  + +  +
Sbjct: 118 -ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFST 300
                                 L NLQ   + +     L            P  I+N   
Sbjct: 176 SGEHQ----------------GLVNLQSLRLEWTGIRSL------------PASIANL-Q 206

Query: 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
            L SL + N+ +  ++ P I  L  L  L +         P   G    L+ L +     
Sbjct: 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 361 SGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQL 416
              +PL +  L  L +L++        +PS + Q  +   I     +L   +    
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  144 bits (366), Expect = 7e-39
 Identities = 60/333 (18%), Positives = 107/333 (32%), Gaps = 56/333 (16%)

Query: 158 NIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYL--E 215
            + P    LS+ +   +   N          N ++    + T   + ++  D L      
Sbjct: 24  ALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRAL-KATADLLEDATQP 81

Query: 216 NLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN 275
               L L    L    P   F                          L +LQH  I    
Sbjct: 82  GRVALELRSVPLP-QFPDQAFR-------------------------LSHLQHMTIDAAG 115

Query: 276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK 335
             EL            P+ +  F   L +L L  N +  ++P  I  L  LR L +    
Sbjct: 116 LMEL------------PDTMQQF-AGLETLTLARNPL-RALPASIASLNRLRELSIRACP 161

Query: 336 LSGTIPSAIG---------DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQG 386
               +P  +           L NL+ L +       ++P S+ NL+ L  L++  + L  
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219

Query: 387 TIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKN 446
            +  ++     L  ++          PP   G + L   L L       +LP+++  L  
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK-RLILKDCSNLLTLPLDIHRLTQ 278

Query: 447 LGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479
           L  LD+ G +    +P  +    +   +L+  +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  144 bits (365), Expect = 8e-39
 Identities = 55/342 (16%), Positives = 109/342 (31%), Gaps = 32/342 (9%)

Query: 181 GSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSS 240
           GS      + S    L    +   R   D L   +            +        N ++
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57

Query: 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFST 300
               +     ++    L    T P      +      +             P+      +
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF------------PDQAFRL-S 104

Query: 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
            L  + +D   +   +P  + +   L  L +  N L   +P++I  L  LR L +     
Sbjct: 105 HLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162

Query: 361 SGNIPLSVGN---------LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGT 411
              +P  + +         L  L  L +    ++ ++P+S+   ++L  +    + LS  
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220

Query: 412 IPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSL 471
           + P +  L  L   LDL       + P   G    L  L +        +P+ +   T L
Sbjct: 221 LGPAIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 472 EKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFL 513
           EKL ++G      +PS +  L    +      +L  ++ +  
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIIL-VPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 24/138 (17%), Positives = 35/138 (25%), Gaps = 10/138 (7%)

Query: 394 QCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDIS 453
                  + F  +         L          D +R H          N  N  +   +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYN-ADRNRWHSAWRQA----NSNNPQIETRT 64

Query: 454 GNLLSGEIPISLGSCTS--LEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK 511
           G  L       L   T      L ++        P     L  L         L  E+P 
Sbjct: 65  GRALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 512 FLAGFKLLENVNLSYNDL 529
            +  F  LE + L+ N L
Sbjct: 122 TMQQFAGLETLTLARNPL 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  150 bits (381), Expect = 9e-41
 Identities = 80/368 (21%), Positives = 154/368 (41%), Gaps = 39/368 (10%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
             +L+   R  L   + T  +      L  +  L +    +   I   +   +N+  ++L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNL 73

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
           + NQ + +I P   +L K+ +L    N +T    S+L NL+++  L L  +NI+   P  
Sbjct: 74  NGNQ-ITDISP-LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP-- 127

Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
           L  L  +  L+LG N    +  S + N + +   +V  ++++   P+     L +L    
Sbjct: 128 LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSLS 183

Query: 271 IVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY 330
           + +N   ++     +    L         T+L       N+I  +    +  +  L  L 
Sbjct: 184 LNYNQIEDI-----SPLASL---------TSLHYFTAYVNQI--TDITPVANMTRLNSLK 227

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
           + NNK++   P  + +L  L  L +  N+ S +I  +V +L  L  L V  N +  +  S
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQI--SDIS 281

Query: 391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL 450
            L     L  +  + N L       + GL++L+ +L LS+NH T   P+   +L  +   
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT-TLFLSQNHITDIRPL--ASLSKMDSA 338

Query: 451 DISGNLLS 458
           D +  ++ 
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (368), Expect = 4e-39
 Identities = 78/365 (21%), Positives = 143/365 (39%), Gaps = 39/365 (10%)

Query: 165 SLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGG 224
            L++         ++T  +      L SI +L +    +  SI   + YL NL +L+L G
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNLNG 75

Query: 225 NMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLND 284
           N ++   P  + N   +T   +  N++     L     L NL+            L LN+
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKITDISALQ---NLTNLRE-----------LYLNE 119

Query: 285 NNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAI 344
           +N   + P  ++N  T + SL L  N    S    +  +  L  L V  +K+    P  I
Sbjct: 120 DNISDISP--LANL-TKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--I 173

Query: 345 GDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFS 404
            +L +L  L ++ N+     PL   +L  L       N +    P  +     L  +   
Sbjct: 174 ANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229

Query: 405 KNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPIS 464
            N ++   P  L  LS L+  L++  N  +      V +L  L +L++  N +S      
Sbjct: 230 NNKITDLSP--LANLSQLT-WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISV 282

Query: 465 LGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNL 524
           L + + L  L +  N+        +  L  L+    +QN+++   P  LA    +++ + 
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340

Query: 525 SYNDL 529
           +   +
Sbjct: 341 ANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (357), Expect = 2e-37
 Identities = 73/411 (17%), Positives = 128/411 (31%), Gaps = 67/411 (16%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
              L           P     L       L   S+   +        +I  + ++  ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLEN 216
                    L+ ++ L    N +T   P  L NL  +  L +  N I  +    L  L N
Sbjct: 57  -ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 217 LSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNF 276
           L  L L  + +S   P +                            L  +    +  N+ 
Sbjct: 112 LRELYLNEDNISDISPLA---------------------------NLTKMYSLNLGANHN 144

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKL 336
              L    +    +         T L  L +  +K+       I  L +L  L +  N++
Sbjct: 145 LSDL----SPLSNM---------TGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQI 189

Query: 337 SGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCK 396
                S +  L +L       N+ +   P+   N+  L  L++  N +    P  L    
Sbjct: 190 ED--ISPLASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSP--LANLS 243

Query: 397 SLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL 456
            L  +    N +S      +  L+ L   L++  N  +    +   NL  L  L ++ N 
Sbjct: 244 QLTWLEIGTNQISD--INAVKDLTKLK-MLNVGSNQISDISVL--NNLSQLNSLFLNNNQ 298

Query: 457 LSGEIPISLGSCTSLEKLLMQGNKFYGPIP-SSLRSLRGLSVWDFAQNNLS 506
           L  E    +G  T+L  L +  N      P +SL  +      DFA   + 
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA---DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (318), Expect = 4e-32
 Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 32/297 (10%)

Query: 89  PYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILM 148
             + NL  L  L++  N  T      +  L  LR L LN ++I    P  ++  + +  +
Sbjct: 82  SPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137

Query: 149 DLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
           +L  N  L ++ P   +++ +  L    + +    P  + NL+ +  LSL YN I    P
Sbjct: 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQH 268
             L  L +L + +   N ++   P  + N + + +  +  N++    PL     L  L  
Sbjct: 195 --LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA---NLSQLTW 247

Query: 269 FGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRR 328
             I  N  +++     N    L         T L  L + +N+I  S    +  L  L  
Sbjct: 248 LEIGTNQISDI-----NAVKDL---------TKLKMLNVGSNQI--SDISVLNNLSQLNS 291

Query: 329 LYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ 385
           L++ NN+L       IG L NL  L +S N  +   PL+  +L  +   + +   ++
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (378), Expect = 6e-39
 Identities = 94/488 (19%), Positives = 153/488 (31%), Gaps = 56/488 (11%)

Query: 92  GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLS 151
            +   L+ L L               L  L  L L  N I        S  S++  +   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 152 VNQLLGNIPPEFGSLSKIKDLRSFMNNLT-GSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
              L        G L  +K+L    N +    +P    NL+++  L L+ N I       
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 211 LGYLENLSF----LSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNL 266
           L  L  +      L L  N ++  I    F    +   ++  N    N+       L  L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 267 QHFGIVFNNFTEL------------------LLLNDNNFGGLIPECISNFSTTLASLF-- 306
           +   +V   F                     +      +     + I +    L ++   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 307 -LDNNKIFGSIPPGIG--------------------KLVNLRRLYVWNNKLSGTIPSAIG 345
            L +  I   +                         KL +L+RL   +NK          
Sbjct: 288 SLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-- 344

Query: 346 DLQNLRMLGMSGNR--FSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF 403
           DL +L  L +S N   F G    S      L  L++S N +  T+ S+    + L  ++F
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 404 SKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI- 461
             +NL       +F  L +L   LD+S  H   +       L +L VL ++GN       
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 462 PISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLEN 521
           P       +L  L +   +     P++  SL  L V + A N L             L+ 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 522 VNLSYNDL 529
           + L  N  
Sbjct: 523 IWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (339), Expect = 1e-33
 Identities = 92/443 (20%), Positives = 158/443 (35%), Gaps = 38/443 (8%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIG-GEIPATMSRCSNIILMDLS 151
            LS L++L     N        IG L+ L+ L + +N I   ++P   S  +N+  +DLS
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 152 VNQLLGNIPPEFGSLSKIKDLR---SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
            N++      +   L ++  L        N    I         + +L+L  N  + ++ 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 209 DT-LGYLENLSFLSLGGNMLSG-----TIPSSIFNR---SSITTFSVVLNRMQGNIPLDF 259
            T +  L  L    L                S        +I  F +       +  +D 
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 260 GFTLPNLQHFGIVFNNFTEL-----------LLLNDNNFGGLIPECISNFSTTLASLFLD 308
              L N+  F +V      +           L L +  FG      + +    L  L   
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS----LKRLTFT 333

Query: 309 NNKIFGSIPPGIGKLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPL 366
           +NK  G+    +  L +L  L +  N LS  G    +     +L+ L +S N     +  
Sbjct: 334 SNKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS 390

Query: 367 SVGNLKMLIQLEVSENFLQGTIPSS-LCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSI 424
           +   L+ L  L+   + L+     S     ++LI ++ S  +        +F GLSSL +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEV 449

Query: 425 SLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG 483
            L ++ N F  +   ++   L+NL  LD+S   L    P +  S +SL+ L M  N+   
Sbjct: 450 -LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 484 PIPSSLRSLRGLSVWDFAQNNLS 506
                   L  L       N   
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (328), Expect = 3e-32
 Identities = 87/468 (18%), Positives = 145/468 (30%), Gaps = 50/468 (10%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
            + L L  N   H           L+ L L+   I           S++  + L+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLE 215
                 F  LS ++ L +   NL       +G+L ++  L++ +N I    +P+    L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 216 NLSFLSLGGNMLSG---------------------------TIPSSIFNRSSITTFSVVL 248
           NL  L L  N +                              I    F    +   ++  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 249 NRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLD 308
           N    N+       L  L+   +V   F     L   +   L   C    + T+    L 
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC----NLTIEEFRLA 265

Query: 309 NNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD--LQNLRMLGMSGNRFSGNIP 365
               +      +   L N+    + +  +   +     +   Q+L ++     +F     
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTL-- 322

Query: 366 LSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS--GTIPPQLFGLSSLS 423
                LK L +L  + N        S     SL  ++ S+N LS  G      FG +SL 
Sbjct: 323 ----KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPIS-LGSCTSLEKLLMQGNKFY 482
             LDLS N    ++      L+ L  LD   + L      S   S  +L  L +      
Sbjct: 377 -YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 483 GPIPSSLRSLRGLSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDL 529
                    L  L V   A N+             + L  ++LS   L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  118 bits (298), Expect = 2e-28
 Identities = 78/400 (19%), Positives = 128/400 (32%), Gaps = 32/400 (8%)

Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
            +   +DLS N L       F S  +++ L      +      +  +LS +  L LT N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 203 IARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF- 261
           I          L +L  L      L+      I +  ++   +V  N +Q +  L   F 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFS 146

Query: 262 TLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIG 321
            L NL+H  +  N       +   +   L             SL L  N +   I PG  
Sbjct: 147 NLTNLEHLDLSSNKIQS---IYCTDLRVL-----HQMPLLNLSLDLSLNPM-NFIQPGAF 197

Query: 322 KLVNLRRLYVWNNKLSGTIPS-AIGDLQNLRMLGMSGNRFSGN---IPLSVGNLKMLIQL 377
           K + L +L + NN  S  +    I  L  L +  +    F             L+ L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 378 EVSENFLQG------TIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRN 431
            + E  L         I        ++   +     +   +    +        L+L   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG--WQHLELVNC 314

Query: 432 HFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK--FYGPIPSSL 489
            F          LK+L  L  + N        S     SLE L +  N   F G    S 
Sbjct: 315 KFGQ---FPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 490 RSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
                L   D + N +   +     G + LE+++  +++L
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 46/243 (18%), Positives = 81/243 (33%), Gaps = 11/243 (4%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355
            N   +  +L L  N +             L+ L +   ++      A   L +L  L +
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ 415
           +GN        +   L  L +L   E  L       +   K+L  +N + N +     P+
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 416 LF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGV----LDISGNLLSGEIPISLGSCTS 470
            F  L++L   LDLS N        ++  L  + +    LD+S N ++  I         
Sbjct: 144 YFSNLTNLEH-LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 471 LEKLLMQGNKFYGPIP----SSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSY 526
           L KL ++ N     +       L  L    +      N         +  + L N+ +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 527 NDL 529
             L
Sbjct: 262 FRL 264

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.1 bits (229), Expect = 7e-20
 Identities = 50/283 (17%), Positives = 94/283 (33%), Gaps = 49/283 (17%)

Query: 89  PYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILM 148
                    + L L N  F    P    +L+ L+ LT  +N  G    + +    ++  +
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFL 352

Query: 149 DLSVNQL--LGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARS 206
           DLS N L   G         + +K L    N +  ++ S+   L  +  L   ++N+ + 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQ 410

Query: 207 IPD--TLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP 264
           + +      L NL +L +          + IFN                         L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG------------------------LS 445

Query: 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKL 323
           +L+            L +  N+F       I      L  L L   ++   + P     L
Sbjct: 446 SLEV-----------LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSL 493

Query: 324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPL 366
            +L+ L + +N+L          L +L+ + +  N +  + P 
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 60/340 (17%), Positives = 102/340 (30%), Gaps = 34/340 (10%)

Query: 91  IGNLSFLRRLHL------DNNNFTHAIPPEIGRLRRLRGLTLNNNSI---GGEIPATMSR 141
           I  L+ L    L      +  N        +  L  L         +     +I    + 
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
            +N+    L    +      +F      + L              L +L     L+ T N
Sbjct: 281 LTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR---LTFTSN 335

Query: 202 NIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRSSITTFSVVLNRMQGNIPLDF 259
               +    +  L +L FL L  N LS  G    S F  +S+    +  N +   +  +F
Sbjct: 336 KG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 392

Query: 260 GFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
              L  L+H           L    +N   +    +      L  L + +         G
Sbjct: 393 -LGLEQLEH-----------LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNG 439

Query: 320 I-GKLVNLRRLYVWNNKLSGTIPS-AIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377
           I   L +L  L +  N            +L+NL  L +S  +     P +  +L  L  L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF 417
            ++ N L+        +  SL  I    N    + P   +
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 2/153 (1%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSN 144
           ++S     L  L  L   ++N        +   LR L  L +++           +  S+
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 145 IILMDLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
           + ++ ++ N    N  P+ F  L  +  L      L    P++  +LSS+  L++  N +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
                     L +L  + L  N    + P   +
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (358), Expect = 1e-35
 Identities = 88/472 (18%), Positives = 162/472 (34%), Gaps = 36/472 (7%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLS 151
            L  L+ L L +      I  E    L  LR L L ++ I    P       ++  + L 
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105

Query: 152 VNQLLGNIPPE--FGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIP 208
              L   +  +  F +L  +  L    N +    +  S G L+S+  +  + N I     
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

Query: 209 DTLGYLE--NLSFLSLGGNMLSGTIPSSIFNRS------SITTFSVVLNRMQGNIPLDFG 260
             L  L+   LSF SL  N L   +               +    V  N    +I  +F 
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225

Query: 261 FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISN-FSTTLASLFLDNNKIFGSIPPG 319
             +   Q F ++  +         +N         +    +++  L L +  +F S+   
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSR 284

Query: 320 I-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE 378
           +   L +L+ L +  NK++     A   L NL++L +S N        +   L  +  ++
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 379 VSENFLQGTIPSSLCQCKSLIGINFSKN--------------NLSGTIPPQLFGLSSLSI 424
           + +N +      +    + L  ++   N               LSG     L  ++  + 
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404

Query: 425 SLDLSRNHFTG-SLPIEVGNLKNLGVLDISGNLLSG-EIPISLGSCTSLEKLLMQGNKFY 482
            + LS N      +   +  + +L +L ++ N  S      +     SLE+L +  N   
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 483 GPIPSSL-----RSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
               + L       L  L V     N L+   P   +    L  ++L+ N L
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  127 bits (321), Expect = 6e-31
 Identities = 75/377 (19%), Positives = 138/377 (36%), Gaps = 40/377 (10%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
            NLT  +P     L++  RL L++N I      +  +LE L  L LG      TI    F
Sbjct: 14  CNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 237 NR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECI 295
               ++    +  +++   +  D    L +L    + F   ++ +L  D  F  L     
Sbjct: 70  RNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVL-KDGYFRNL----- 122

Query: 296 SNFSTTLASLFLDNNKIFG-SIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQ--NLRM 352
                 L  L L  N+I    + P  GKL +L+ +   +N++       +  LQ   L  
Sbjct: 123 ----KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 353 LGMSGNRFSGNIPLSV------------------GNLKMLIQLEVSENFLQGTIPSSLCQ 394
             ++ N     + +                    GN   +       N +  +   SL  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 395 CKSLIGINFSKNNLSGTIPPQLF-GLSSLSI-SLDLSRNHFTGSLPIEVGNLKNLGVLDI 452
              ++G  F  +N+        F GL+  S+  LDLS              LK+L VL++
Sbjct: 239 AHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF 512
           + N ++     +     +L+ L +  N       S+   L  ++  D  +N+++    + 
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 513 LAGFKLLENVNLSYNDL 529
               + L+ ++L  N L
Sbjct: 358 FKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (314), Expect = 5e-30
 Identities = 85/473 (17%), Positives = 171/473 (36%), Gaps = 64/473 (13%)

Query: 90  YIGNLSFLRRLHLDNNNFTH-AIPPEIGRLRRLRGLTLNNNSIGGEIPATMS--RCSNII 146
           Y  NL  L RL L  N      + P  G+L  L+ +  ++N I       +   +   + 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 147 LMDLSVNQLLGNIPPEF-GSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
              L+ N L   +  ++   ++  +++   + +++G       N  ++       N I++
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISK 230

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIF---NRSSITTFSVVLNRMQGNIPLDFGFT 262
           S   +L    ++     G + +      + F    RSS+    +    +  ++      T
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFET 288

Query: 263 LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-G 321
           L +L+   + +N   ++    D  F GL           L  L L  N + G +      
Sbjct: 289 LKDLKVLNLAYNKINKI---ADEAFYGL---------DNLQVLNLSYNLL-GELYSSNFY 335

Query: 322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF--------------SGNIPLS 367
            L  +  + +  N ++         L+ L+ L +  N                SGN  ++
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395

Query: 368 VGNLKM-LIQLEVSENFLQG-TIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS 425
           +  + +    + +SEN L+   I   L +   L  +  ++N  S     Q    +     
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 426 LDLSRNHFTGSLPIEV-----GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK 480
           L L  N    +   E+       L +L VL ++ N L+   P      T+L  L +  N+
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 481 F----YGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
                +  +P++L  L      D ++N L    P     F  L  +++++N  
Sbjct: 516 LTVLSHNDLPANLEIL------DISRNQLLAPNPDV---FVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.1 bits (247), Expect = 8e-22
 Identities = 71/398 (17%), Positives = 138/398 (34%), Gaps = 27/398 (6%)

Query: 83  LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRR--LRGLTLNNNSIGGEIPATMS 140
           ++ S +  +     +       +N           L R  +R L L++  +         
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 141 RCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
              ++ +++L+ N++       F  L  ++ L    N L     S+   L  +  + L  
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 201 NNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG 260
           N+IA     T  +LE L  L L  N L+     +I    SI    +  N++     ++  
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 261 FTLPNLQHFGI-------VFNNFTEL--LLLNDNNFGGLIPECISNFSTTLASLFLDNNK 311
             L +L    +              L  L+LN N F     +   + + +L  LFL  N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 312 IFGSIPPGI-----GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPL 366
           +  +    +       L +L+ LY+ +N L+   P     L  LR L ++ NR +  +  
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSH 521

Query: 367 SVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISL 426
           +      L  L++S N L    P       SL  ++ + N          F ++ L+ + 
Sbjct: 522 ND-LPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTF-INWLNHTN 576

Query: 427 DLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPIS 464
                       +   +   + +  +S      E  + 
Sbjct: 577 VTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLK 614

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 19/206 (9%)

Query: 79  ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGG-EIPA 137
           ++L L  +    I  +  +  + L  N     +P        +    L+ N +   +I  
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVT-LPKINLTANLIH---LSENRLENLDILY 420

Query: 138 TMSRCSNIILMDLSVNQLLGNIPPE--FGSLSKIKDLRSFMNNLTGSIPSSL-----GNL 190
            + R  ++ ++ L+ N+   +   +        ++ L    N L  +  + L       L
Sbjct: 421 FLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 191 SSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNR 250
           S +  L L +N +    P    +L  L  LSL  N L+  +  +    +++    +  N+
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQ 537

Query: 251 MQGNIPLDFGFTLPNLQHFGIVFNNF 276
           +    P        +L    I  N F
Sbjct: 538 LLAPNP----DVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 29/145 (20%)

Query: 393 CQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI 452
           C     I   +   NL+  +P     L++    L LS N+           L+ L +L++
Sbjct: 2   CSFDGRI-AFYRFCNLT-QVPQ---VLNTTER-LLLSFNYIRTVTASSFPFLEQLQLLEL 55

Query: 453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF 512
                   I                          + R+L  L + D   + +    P  
Sbjct: 56  GSQYTPLTID-----------------------KEAFRNLPNLRILDLGSSKIYFLHPDA 92

Query: 513 LAGFKLLENVNLSYNDLGARYVPTE 537
             G   L  + L +  L    +   
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDG 117

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (351), Expect = 2e-35
 Identities = 77/479 (16%), Positives = 155/479 (32%), Gaps = 55/479 (11%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMD 149
           +   + L+ L L ++     I  +    L  L  L L++N +     +     S++  ++
Sbjct: 46  LRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 150 LSVNQLLG-NIPPEFGSLSKIKDLR-SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSI 207
           L  N      +   F +L+ ++ LR   +   +         L+S+  L +   ++    
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 208 PDTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFT---- 262
             +L  + ++  L+L  +  +  +     +  SS+    +    +               
Sbjct: 165 SQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 263 --------------------------LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECIS 296
                                     +  L            L   N +    ++ E   
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES-DVVSELGK 282

Query: 297 NFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356
             + T+  L +    +F  +      L  ++R+ V N+K+     S    L++L  L +S
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 357 GNRFSGNI---PLSVGNLKMLIQLEVSENFLQ--GTIPSSLCQCKSLIGINFSKNNLSGT 411
            N             G    L  L +S+N L+        L   K+L  ++ S+N     
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-P 401

Query: 412 IPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSL 471
           +P        +   L+LS         ++    + L VLD+S N L     + L     L
Sbjct: 402 MPDSCQWPEKMRF-LNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSLFL---PRL 453

Query: 472 EKLLMQGNKFYG-PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
           ++L +  NK    P  S    L  +     ++N L             L+ + L  N  
Sbjct: 454 QELYISRNKLKTLPDASLFPVLLVM---KISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  124 bits (314), Expect = 1e-30
 Identities = 89/477 (18%), Positives = 175/477 (36%), Gaps = 53/477 (11%)

Query: 92  GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLS 151
           G  + ++ L L  N  T+    ++     L+ L L ++ I            ++  +DLS
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 152 VNQLLGNIPPE-FGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIP- 208
            N  L ++    FG LS +K L    N      + S   NL+++  L +        I  
Sbjct: 83  DNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQH 268
                L +L+ L +    L      S+ +   I   ++ L+     +   F   L ++++
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200

Query: 269 FGIVFNNFTEL------------LLLNDNNFGGLIPECISNFSTTLASLFLDNNKI---- 312
             +   N                 +      G ++ +   N    L    L+ +++    
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 313 -----FGSIPPGIG---------KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
                 G   P            + V +RRL++    L   + +    L+ ++ + +  +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 359 RFSGNIPLSVG-NLKMLIQLEVSENFLQGTI---PSSLCQCKSLIGINFSKNNLSG-TIP 413
           +    +P S   +LK L  L++SEN +        +      SL  +  S+N+L      
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 414 PQLF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLE 472
            ++   L +L+ SLD+SRN F   +P      + +  L++S   +     +      +LE
Sbjct: 380 GEILLTLKNLT-SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLE 434

Query: 473 KLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            L +  N         L  L+ L     ++N L   +P   + F +L  + +S N L
Sbjct: 435 VLDVSNNNL-DSFSLFLPRLQEL---YISRNKLK-TLPDA-SLFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (306), Expect = 1e-29
 Identities = 67/427 (15%), Positives = 132/427 (30%), Gaps = 38/427 (8%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPE-IGRLRRLRGLTLNNNSIGGEIPATMSRCSN 144
            ++    NL+ L+ L + N      I       L  L  L +   S+      ++    +
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173

Query: 145 IILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIA 204
           I  + L +++    +      LS ++ L     NL     S L        +       +
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 205 RSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP 264
               ++   L  L    L  + +        F+  ++             +         
Sbjct: 234 VLTDESFNELLKLLRYILELSEVE-------FDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGK-L 323
            ++            L +        +    S     +  + ++N+K+F  +P    + L
Sbjct: 287 TIRR-----------LHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LVPCSFSQHL 333

Query: 324 VNLRRLYVWNNKLSGTI---PSAIGDLQNLRMLGMSGNRFS--GNIPLSVGNLKMLIQLE 378
            +L  L +  N +        +  G   +L+ L +S N           +  LK L  L+
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP 438
           +S N     +P S    + +  +N S   +   +   +    +L + LD+S N+   S  
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEV-LDVSNNNLD-SFS 447

Query: 439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVW 498
           +    L  L  L IS N L   +P        L  + +  N+           L  L   
Sbjct: 448 L---FLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

Query: 499 DFAQNNL 505
               N  
Sbjct: 503 WLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (275), Expect = 1e-25
 Identities = 63/375 (16%), Positives = 132/375 (35%), Gaps = 38/375 (10%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
            + T SIPS L   +++  L L++N I       L    NL  L L  + ++ TI    F
Sbjct: 15  RSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAF 70

Query: 237 NR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECI 295
               S+    +  N +  ++   +   L +L++  ++ N +  L +   + F  L     
Sbjct: 71  YSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGV--TSLFPNL----- 122

Query: 296 SNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
               T L +L + N + F  I       L +L  L +    L      ++  ++++  L 
Sbjct: 123 ----TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 355 MSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG---- 410
           +  +  +  + +    L  +  LE+ +  L     S L   +    +       S     
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 411 ------TIPPQLFGLSSLSIS-------LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLL 457
                  +   +  LS +           D + +       +       +  L I    L
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 458 SGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK---FLA 514
             ++         ++++ ++ +K +    S  + L+ L   D ++N +  E  K      
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 515 GFKLLENVNLSYNDL 529
            +  L+ + LS N L
Sbjct: 359 AWPSLQTLVLSQNHL 373

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  136 bits (345), Expect = 4e-35
 Identities = 87/465 (18%), Positives = 168/465 (36%), Gaps = 81/465 (17%)

Query: 87  ISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNII 146
           I+P   + +FL+     ++N T  +P E   ++         +      P          
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGE----- 56

Query: 147 LMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARS 206
             +++V++L   +  +   L    +L +    L+ S+P    +L S   L  + N++   
Sbjct: 57  QREMAVSRLRDCLDRQAHEL----ELNN--LGLS-SLPELPPHLES---LVASCNSL-TE 105

Query: 207 IPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNL 266
           +P+    L++L   +     LS   P        +    V  N+++  +P +       L
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQN-SSFL 155

Query: 267 QHFGIVFNNFTEL---------LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIP 317
           +   +  N+  +L         +   +N    L PE + N    L +++ DNN +   +P
Sbjct: 156 KIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL-PE-LQNL-PFLTAIYADNNSL-KKLP 211

Query: 318 PGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377
                  +L  +   NN L       + +L  L  +    N     +P    +L+    L
Sbjct: 212 DLPL---SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---AL 262

Query: 378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLS-------------I 424
            V +N+L   +P        L       + LS  +PP L+ L++ S              
Sbjct: 263 NVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLE 320

Query: 425 SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGP 484
            L++S N     LP     L+    L  S N L+ E+P    +   L    ++ N     
Sbjct: 321 ELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQLH---VEYNPLRE- 371

Query: 485 IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            P    S+  L +     N+   E+P+       L+ +++  N L
Sbjct: 372 FPDIPESVEDLRM-----NSHLAEVPELPQN---LKQLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (315), Expect = 5e-31
 Identities = 85/430 (19%), Positives = 141/430 (32%), Gaps = 70/430 (16%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
           S+     +L     L    N+ T  +P     L+ L     N  ++    P        +
Sbjct: 85  SLPELPPHL---ESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPP-------LL 133

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
             + +S NQL     PE  + S +K +    N+L   +P    +L     ++   N +  
Sbjct: 134 EYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQL-E 186

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN 265
            +P+ L  L  L+ +    N L   +P    +   + +     N ++     +    LP 
Sbjct: 187 ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE--ELPELQ-NLPF 238

Query: 266 LQHFGIVFNNFTEL---------LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSI 316
           L       N    L         L + DN    L PE   +    L  L +  N     +
Sbjct: 239 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL-PELPQS----LTFLDVSENIF-SGL 292

Query: 317 PPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQ 376
                   NL  L   +N++     S      +L  L +S N+    +P     L+ LI 
Sbjct: 293 SELPP---NLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI- 343

Query: 377 LEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS 436
              S N L   +P      K L   +   N L    P     +  L ++  L+       
Sbjct: 344 --ASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRMNSHLA------E 390

Query: 437 LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLS 496
           +P    NLK    L +  N L  E P    S   +E L M   +   P   +  +   L 
Sbjct: 391 VPELPQNLK---QLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLE 443

Query: 497 VWDFAQNNLS 506
              F  ++  
Sbjct: 444 DDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  123 bits (310), Expect = 2e-30
 Identities = 77/421 (18%), Positives = 139/421 (33%), Gaps = 82/421 (19%)

Query: 79  ESLKLAG----SISPYIGNLSFLRRLHLDNNNFTHAIP---------------PEIGRLR 119
           ESL  +      +     +L  L   + +    +   P               PE+    
Sbjct: 94  ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS 153

Query: 120 RLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNL 179
            L+ + ++NNS+  ++P       ++  +    NQL     PE  +L  +  + +  N+L
Sbjct: 154 FLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSL 207

Query: 180 TGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRS 239
              +P    +L     +    N +       L  L  L+ +    N+L  T+P    +  
Sbjct: 208 K-KLPDLPLSLE---SIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE 260

Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFS 299
           ++      L              LP L        + T L +    N    + E   N  
Sbjct: 261 ALNVRDNYLT------------DLPEL------PQSLTFLDVSE--NIFSGLSELPPN-- 298

Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
             L  L   +N+I  S+        +L  L V NNKL   +P+    L+ L     S N 
Sbjct: 299 --LYYLNASSNEI-RSLC---DLPPSLEELNVSNNKLI-ELPALPPRLERLIA---SFNH 348

Query: 360 FSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGL 419
            +  +P    NLK   QL V  N L+   P      + L       N+    +P     L
Sbjct: 349 LA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDL-----RMNSHLAEVPELPQNL 398

Query: 420 SSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479
             L     +  N      P    ++++L    ++   +      +  +   LE  + + +
Sbjct: 399 KQL----HVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHH 450

Query: 480 K 480
            
Sbjct: 451 H 451

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (345), Expect = 7e-35
 Identities = 69/415 (16%), Positives = 129/415 (31%), Gaps = 32/415 (7%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
           +I     N +  +   + +++   A+         ++ L L+ N +     A ++  + +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
            L++LS N L      +  SLS ++ L    N +       L    SI  L    NNI  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-S 112

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN 265
            +       +    + L  N ++         RS +    + LN +      +   +   
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 266 LQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN 325
           L+H           L L  N    +  +        L +L L +NK+   + P       
Sbjct: 171 LEH-----------LNLQYNFIYDVKGQV---VFAKLKTLDLSSNKL-AFMGPEFQSAAG 215

Query: 326 LRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ 385
           +  + + NNKL   I  A+   QNL    + GN F     L     K      V++  ++
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

Query: 386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS----LDLSRNHFTGSLPIEV 441
                +  +C      ++          P    L +L       L    +     L  E 
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECER 332

Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLS 496
            N      +D         I        +   L  +       + +  R+   L 
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (304), Expect = 1e-29
 Identities = 57/366 (15%), Positives = 116/366 (31%), Gaps = 55/366 (15%)

Query: 163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL 222
             + ++ K  +   ++L  ++ S   +  ++  L L+ N +++     L     L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 223 GGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLL 282
             N+L                                  +L  L+   +  N   ELL+ 
Sbjct: 66  SSNVL-----------YETLDLE----------------SLSTLRTLDLNNNYVQELLVG 98

Query: 283 NDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPS 342
                             ++ +L   NN I   +    G+    + +Y+ NNK++     
Sbjct: 99  -----------------PSIETLHAANNNI-SRVSCSRGQ--GKKNIYLANNKITMLRDL 138

Query: 343 AIGDLQNLRMLGMSGNRFSG-NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGI 401
             G    ++ L +  N     N      +   L  L +  NF+   +   +     L  +
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTL 196

Query: 402 NFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS-GE 460
           + S N L+  + P+    + ++  + L  N     +   +   +NL   D+ GN    G 
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVT-WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 461 IPISLGSCTSLEKLLMQGNKF-YGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLL 519
           +         ++ +  Q  K   G                +   +L       L   K  
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313

Query: 520 ENVNLS 525
           E+  LS
Sbjct: 314 EHALLS 319

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 419 LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478
            +   I   ++ +    +L     +  N+  LD+SGN LS      L   T LE L +  
Sbjct: 9   GNRYKI-EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 479 NKFYGPIP-SSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
           N  Y  +   SL +LR L   D   N +       L     +E ++ + N++
Sbjct: 68  NVLYETLDLESLSTLRTL---DLNNNYVQE-----LLVGPSIETLHAANNNI 111

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  137 bits (346), Expect = 2e-34
 Identities = 83/355 (23%), Positives = 139/355 (39%), Gaps = 58/355 (16%)

Query: 141 RCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
             +   ++++  + L   +P    +   I  L    NNLT S+P+    L +   L ++ 
Sbjct: 38  LNNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPPELRT---LEVSG 90

Query: 201 NNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG 260
           N +  S+P     L  LS  S     L           S +    +  N++         
Sbjct: 91  NQL-TSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-------- 134

Query: 261 FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320
            +LP L           EL +   +N    +P   S     L  L+  NN++  S+P   
Sbjct: 135 -SLPVL------PPGLQELSV--SDNQLASLPALPSE----LCKLWAYNNQL-TSLPMLP 180

Query: 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380
                L+ L V +N+L+ ++P+   +L  L       NR + ++P     LK   +L VS
Sbjct: 181 S---GLQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLPALPSGLK---ELIVS 229

Query: 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIE 440
            N L  ++P    + K L     S N L+ ++P    GL    +SL + RN  T  LP  
Sbjct: 230 GNRLT-SLPVLPSELKEL---MVSGNRLT-SLPMLPSGL----LSLSVYRNQLT-RLPES 279

Query: 441 VGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGL 495
           + +L +   +++ GN LS     +L   TS         +F     S+ R  R L
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (294), Expect = 7e-28
 Identities = 64/347 (18%), Positives = 118/347 (34%), Gaps = 54/347 (15%)

Query: 94  LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVN 153
            + +  L + +NN T  +P     LR    L ++ N +   +P        + +    + 
Sbjct: 60  PAHITTLVIPDNNLTS-LPALPPELRT---LEVSGNQL-TSLPVLPPGLLELSIFSNPLT 114

Query: 154 QLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGY 213
            L     P     S +  L  F N LT S+P     L     LS++ N +  S+P     
Sbjct: 115 HL-----PA--LPSGLCKLWIFGNQLT-SLPVLPPGLQE---LSVSDNQL-ASLPALPSE 162

Query: 214 LENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVF 273
           L     L    N L+ ++P      S +   SV  N++  ++P         L       
Sbjct: 163 LCK---LWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPS----ELYKLWAYN 210

Query: 274 NNFTEL---------LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLV 324
           N  T L         L+++ N    L P   S     L  L +  N++  S+P       
Sbjct: 211 NRLTSLPALPSGLKELIVSGNRLTSL-PVLPSE----LKELMVSGNRL-TSLPMLPS--- 261

Query: 325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL 384
            L  L V+ N+L+  +P ++  L +   + + GN  S     ++  +             
Sbjct: 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

Query: 385 QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRN 431
                S+  + ++L          +  + P   G  + +    +   
Sbjct: 321 DMAGASAPRETRALH------LAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 20/137 (14%)

Query: 393 CQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI 452
           C       +N  ++ L+ T+P  L   + ++ +L +  N+ T SLP     L+    L++
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHIT-TLVIPDNNLT-SLPALPPELRT---LEV 88

Query: 453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF 512
           SGN L+  +P+       L             +P+    L  L ++    N L+  +P  
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLWIFG---NQLT-SLPVL 139

Query: 513 LAGFKLLENVNLSYNDL 529
             G   L+ +++S N L
Sbjct: 140 PPG---LQELSVSDNQL 153

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 23/149 (15%), Positives = 35/149 (23%), Gaps = 29/149 (19%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
           S+      L     L +  N  T  +P  +  L     + L  N +      T+     I
Sbjct: 255 SLPMLPSGL---LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL---SERTLQALREI 307

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
                    ++                    +    S P     L       L       
Sbjct: 308 TSAPGYSGPII------------------RFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 206 SIP----DTLGYLENLSFLSLGGNMLSGT 230
             P       G  +N    SL  + LS T
Sbjct: 350 PAPADRWHMFGQEDNADAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVW 498
           +         VL++  + L+  +P  L     +  L++  N     +P+    LR L V 
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL-TSLPALPPELRTLEVS 89

Query: 499 DFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
               N L+  +P    G   L   +     L
Sbjct: 90  G---NQLT-SLPVLPPGLLELSIFSNPLTHL 116

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (311), Expect = 2e-31
 Identities = 61/348 (17%), Positives = 113/348 (32%), Gaps = 33/348 (9%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
           +I     N +  +   + +++   A+         ++ L L+ N +     A ++  + +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
            L++LS N L      +  SLS ++ L    N +       L    SI  L    NNI  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-S 112

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN 265
            +       +    + L  N ++         RS +    + LN +      +   +   
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 266 LQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN 325
           L+H           L L  N    +  +        L +L L +NK+   + P       
Sbjct: 171 LEH-----------LNLQYNFIYDVKGQV---VFAKLKTLDLSSNKL-AFMGPEFQSAAG 215

Query: 326 LRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ 385
           +  + + NNKL   I  A+   QNL    + GN F     L     K      V++  ++
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK 273

Query: 386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF 433
                +  +C                  P  F        + L  +H 
Sbjct: 274 KLTGQNEEECTVP--TLGHYGAYCCEDLPAPFADR----LIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (310), Expect = 2e-31
 Identities = 53/348 (15%), Positives = 113/348 (32%), Gaps = 62/348 (17%)

Query: 159 IPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLS 218
           I     + ++ K  +   ++L  ++ S   +  ++  L L+ N +++     L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 219 FLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTE 278
            L+L  N+L                                  +L  L+   +  N   E
Sbjct: 62  LLNLSSNVL-----------YETLDLE----------------SLSTLRTLDLNNNYVQE 94

Query: 279 LLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG 338
           LL+                   ++ +L   NN I   +    G+    + +Y+ NNK++ 
Sbjct: 95  LLVG-----------------PSIETLHAANNNI-SRVSCSRGQ--GKKNIYLANNKITM 134

Query: 339 TIPSAIGDLQNLRMLGMSGNRFSG-NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKS 397
                 G    ++ L +  N     N      +   L  L +  NF+   +   +     
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAK 192

Query: 398 LIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLL 457
           L  ++ S N L+  + P+    + ++  + L  N     +   +   +NL   D+ GN  
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQSAAGVT-WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

Query: 458 SGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNL 505
                     C +L     +  +       +++ L G +  +     L
Sbjct: 250 ---------HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 2e-26
 Identities = 53/361 (14%), Positives = 110/361 (30%), Gaps = 56/361 (15%)

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN 265
           +I +            +  + L     +S+                             N
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQS------------------------AWN 35

Query: 266 LQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN 325
           ++            L L+ N    +    ++ F T L  L L +N +       +  L  
Sbjct: 36  VKE-----------LDLSGNPLSQISAADLAPF-TKLELLNLSSNVL--YETLDLESLST 81

Query: 326 LRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ 385
           LR L + NN +       +    ++  L  + N  S    +S    +    + ++ N + 
Sbjct: 82  LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKIT 133

Query: 386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLK 445
                       +  ++   N +      +L   S     L+L  N     +  +V    
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFA 191

Query: 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNL 505
            L  LD+S N L+  +     S   +  + ++ NK    I  +LR  + L  +D   N  
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249

Query: 506 S-GEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFP 564
             G +  F +  + ++ V         + +  +   + +  T     +  C  +P     
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTV----KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

Query: 565 R 565
           R
Sbjct: 306 R 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 5e-31
 Identities = 65/368 (17%), Positives = 126/368 (34%), Gaps = 36/368 (9%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSV 152
                  +H+D          E   L   + +T  N+++     A +     + L++L+ 
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78

Query: 153 NQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTL 211
            Q +  I    F     I+ L    N +    P    N+  +  L L  N+++       
Sbjct: 79  LQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 212 GYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
                L+ LS+  N L   I    F   +S+    +  NR+  ++ L     +P+L H  
Sbjct: 138 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHAN 192

Query: 271 IVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY 330
           + +N  + L +                    +  L   +N I   +   +   V L  L 
Sbjct: 193 VSYNLLSTLAIP-----------------IAVEELDASHNSI-NVVRGPV--NVELTILK 232

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
           + +N L  T  + + +   L  + +S N     +      ++ L +L +S N L   +  
Sbjct: 233 LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL 450
                 +L  ++ S N+L   +         L  +L L  N       +++     L  L
Sbjct: 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLDHNSIV---TLKLSTHHTLKNL 344

Query: 451 DISGNLLS 458
            +S N   
Sbjct: 345 TLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (298), Expect = 3e-29
 Identities = 61/381 (16%), Positives = 132/381 (34%), Gaps = 36/381 (9%)

Query: 103 DNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE 162
                   I   +        + ++  +            +N  ++    +  +  +P  
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAA 63

Query: 163 -FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLS 221
              S  +++ L      +      +     +I +L + +N I    P     +  L+ L 
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 222 LGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELL 280
           L  N LS ++P  IF+    +TT S+  N ++  I  D      +LQ+           L
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN-----------L 170

Query: 281 LLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTI 340
            L+ N    +    I +    L    +  N +       +   + +  L   +N ++  +
Sbjct: 171 QLSSNRLTHVDLSLIPS----LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VV 220

Query: 341 PSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIG 400
                    L +L +  N  + +    + N   L+++++S N L+  +     + + L  
Sbjct: 221 RG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

Query: 401 INFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460
           +  S N L   +      + +L + LDLS NH    +         L  L +  N +   
Sbjct: 277 LYISNNRLV-ALNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-- 331

Query: 461 IPISLGSCTSLEKLLMQGNKF 481
             + L +  +L+ L +  N +
Sbjct: 332 -TLKLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 6e-29
 Identities = 64/391 (16%), Positives = 131/391 (33%), Gaps = 62/391 (15%)

Query: 143 SNIILMDLSVNQLLGNIP--PEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
            + +  D+ ++    ++    E  +L+  K +    + +     + L +   +  L+L  
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78

Query: 201 NNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG 260
             I         Y   +  L +G N +   +P  +F                        
Sbjct: 79  LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQN---------------------- 115

Query: 261 FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320
             +P L    +  N+ +    L    F              L +L + NN +   I    
Sbjct: 116 --VPLLTVLVLERNDLSS---LPRGIFHNT---------PKLTTLSMSNNNL-ERIEDDT 160

Query: 321 -GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
                +L+ L + +N+L+  +   +  + +L    +S N  S     ++     + +L+ 
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212

Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI 439
           S N +   +   +     L  +    NNL  T    L     L + +DLS N     +  
Sbjct: 213 SHNSIN-VVRGPVNV--ELTILKLQHNNL--TDTAWLLNYPGL-VEVDLSYNELE-KIMY 265

Query: 440 EV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVW 498
                ++ L  L IS N L   + +      +L+ L +  N     +  +      L   
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENL 323

Query: 499 DFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
               N++   +   L+    L+N+ LS+ND 
Sbjct: 324 YLDHNSIV-TLK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (292), Expect = 2e-28
 Identities = 67/372 (18%), Positives = 123/372 (33%), Gaps = 55/372 (14%)

Query: 159 IPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLS 218
           I           D+   M             L++   ++   + + +     L     + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 219 FLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTE 278
            L+L    +   I +  F                             +Q   + FN    
Sbjct: 73  LLNLNDLQIE-EIDTYAFAY------------------------AHTIQKLYMGFNAIRY 107

Query: 279 LLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLS 337
              L  + F  +           L  L L+ N +  S+P GI      L  L + NN L 
Sbjct: 108 ---LPPHVFQNV---------PLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE 154

Query: 338 GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKS 397
                      +L+ L +S NR +    + +  +  L    VS N L     S+L    +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 398 LIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLL 457
           +  ++ S N+++  +   +     L+  L L  N+ T      + N   L  +D+S N L
Sbjct: 207 VEELDASHNSIN-VVRGPVN--VELT-ILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNEL 260

Query: 458 SGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK 517
              +         LE+L +  N+    +    + +  L V D + N+L   + +    F 
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 518 LLENVNLSYNDL 529
            LEN+ L +N +
Sbjct: 319 RLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 48/292 (16%), Positives = 95/292 (32%), Gaps = 59/292 (20%)

Query: 92  GNLSFLRRLHLDNNNFTHAIPPEIGR-LRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
            N   L  L + NNN    I  +  +    L+ L L++N +   +    S   ++   ++
Sbjct: 138 HNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL-THVDL--SLIPSLFHANV 193

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
           S N L             +++L +  N++   +   +     +  L L +NN+       
Sbjct: 194 SYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAW 243

Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
           L     L  + L  N L   I    F +                        +  L+   
Sbjct: 244 LLNYPGLVEVDLSYNELE-KIMYHPFVK------------------------MQRLERLY 278

Query: 271 IVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY 330
           I  N    L    +     +          TL  L L +N +   +     +   L  LY
Sbjct: 279 ISNNRLVAL----NLYGQPI---------PTLKVLDLSHNHL-LHVERNQPQFDRLENLY 324

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382
           + +N +  T+   +     L+ L +S N +  N   ++   + + +  V + 
Sbjct: 325 LDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 38/224 (16%), Positives = 80/224 (35%), Gaps = 13/224 (5%)

Query: 308 DNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLS 367
                +  I   +        +++               L N +++    +         
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 368 VGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISL 426
           + + + +  L +++  ++     +     ++  +    N +   +PP +F  +  L   L
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLL-TVL 122

Query: 427 DLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPI 485
            L RN  + SLP  +  N   L  L +S N L      +  + TSL+ L +  N+     
Sbjct: 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 486 PSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            S + SL      + + N LS      LA    +E ++ S+N +
Sbjct: 182 LSLIPSLFHA---NVSYNLLS-----TLAIPIAVEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
           +     +  L   +N+    +   +     L  L L +N++  +    +     ++ +DL
Sbjct: 201 LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNL-TDTAW-LLNYPGLVEVDL 255

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD 209
           S N+ L  I    F  + +++ L    N L  ++      + ++  L L++N++   +  
Sbjct: 256 SYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVER 312

Query: 210 TLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
                + L  L L  N +  T+  S  + 
Sbjct: 313 NQPQFDRLENLYLDHNSIV-TLKLSTHHT 340

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 24/151 (15%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 89  PYIGNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIIL 147
            ++ N   L  + L  N     I      +++RL  L ++NN +   +         + +
Sbjct: 242 AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKV 299

Query: 148 MDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSI 207
           +DLS N LL ++        ++++L    N++  ++   L    ++  L+L++N+   + 
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN- 354

Query: 208 PDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
                   N++  ++        I   + + 
Sbjct: 355 -SLRALFRNVARPAVDDADQHCKIDYQLEHG 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  122 bits (308), Expect = 1e-29
 Identities = 65/368 (17%), Positives = 125/368 (33%), Gaps = 36/368 (9%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSV 152
                  +H+D          E   L   + +T  N+++     A +     + L++L+ 
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84

Query: 153 NQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTL 211
            Q +  I    F     I+ L    N +    P    N+  +  L L  N+++       
Sbjct: 85  LQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143

Query: 212 GYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
                L+ LS+  N L   I    F   +S+    +  NR+  ++ L     +P+L H  
Sbjct: 144 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHAN 198

Query: 271 IVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY 330
           + +N  + L                      +  L   +N I   +   +   V L  L 
Sbjct: 199 VSYNLLSTL-----------------AIPIAVEELDASHNSI-NVVRGPV--NVELTILK 238

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
           + +N L  T  + + +   L  + +S N     +      ++ L +L +S N L   +  
Sbjct: 239 LQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 295

Query: 391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL 450
                 +L  ++ S N+L   +         L  +L L  N       +++     L  L
Sbjct: 296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLDHNSIV---TLKLSTHHTLKNL 350

Query: 451 DISGNLLS 458
            +S N   
Sbjct: 351 TLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (293), Expect = 8e-28
 Identities = 64/391 (16%), Positives = 130/391 (33%), Gaps = 62/391 (15%)

Query: 143 SNIILMDLSVNQLLGNIP--PEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTY 200
            + +  D+ ++    ++    E  +L+  K +    + +     + L +   +  L+L  
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84

Query: 201 NNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG 260
             I         Y   +  L +G N +   +P  +F                        
Sbjct: 85  LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQN---------------------- 121

Query: 261 FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320
             +P L    +  N+ +    L    F              L +L + NN +   I    
Sbjct: 122 --VPLLTVLVLERNDLSS---LPRGIFHNT---------PKLTTLSMSNNNL-ERIEDDT 166

Query: 321 -GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
                +L+ L + +N+L+  +   +  + +L    +S N  S     ++     + +L+ 
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 218

Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI 439
           S N +   +   +     L  +    NNL  T    L     L   +DLS N     +  
Sbjct: 219 SHNSIN-VVRGPVNV--ELTILKLQHNNL--TDTAWLLNYPGLV-EVDLSYNELE-KIMY 271

Query: 440 EV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVW 498
                ++ L  L IS N L   + +      +L+ L +  N     +  +      L   
Sbjct: 272 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENL 329

Query: 499 DFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
               N++   +   L+    L+N+ LS+ND 
Sbjct: 330 YLDHNSIV-TLK--LSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  114 bits (287), Expect = 5e-27
 Identities = 65/396 (16%), Positives = 143/396 (36%), Gaps = 37/396 (9%)

Query: 111 IPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE-FGSLSKI 169
           I   +        + ++  +            +N  ++    +  +  +P     S  ++
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQV 77

Query: 170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSG 229
           + L      +      +     +I +L + +N I    P     +  L+ L L  N LS 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 136

Query: 230 TIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFG 288
           ++P  IF+    +TT S+  N ++  I  D      +LQ+           L L+ N   
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN-----------LQLSSNRLT 184

Query: 289 GLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQ 348
            +    I +    L    +  N +       +   + +  L   +N ++  +   +    
Sbjct: 185 HVDLSLIPS----LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NV 232

Query: 349 NLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNL 408
            L +L +  N  + +    + N   L+++++S N L+  +     + + L  +  S N L
Sbjct: 233 ELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 409 SGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSC 468
              +      + +L + LDLS NH    +         L  L +  N +     + L + 
Sbjct: 291 V-ALNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTH 344

Query: 469 TSLEKLLMQGNKF-YGPIPSSLRSLRGLSVWDFAQN 503
            +L+ L +  N +    + +  R++   +V D  Q+
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.4 bits (198), Expect = 5e-16
 Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 58/280 (20%)

Query: 86  SISPYI-GNLSFLRRLHLDNNNFTHAIPPEIGR-LRRLRGLTLNNNSIGGEIPATMSRCS 143
           S+   I  N   L  L + NNN    I  +  +    L+ L L++N +   +    S   
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL-THVDL--SLIP 192

Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
           ++   ++S N L             +++L +  N++   +   +     +  L L +NN+
Sbjct: 193 SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 244

Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
                  L     L  + L  N L   I    F +                        +
Sbjct: 245 TD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVK------------------------M 277

Query: 264 PNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323
             L+   I  N    L    +     +          TL  L L +N +   +     + 
Sbjct: 278 QRLERLYISNNRLVAL----NLYGQPI---------PTLKVLDLSHNHL-LHVERNQPQF 323

Query: 324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN 363
             L  LY+ +N +  T+   +     L+ L +S N +  N
Sbjct: 324 DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 24/151 (15%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 89  PYIGNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIIL 147
            ++ N   L  + L  N     I      +++RL  L ++NN +   +         + +
Sbjct: 248 AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKV 305

Query: 148 MDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSI 207
           +DLS N LL ++        ++++L    N++  ++   L    ++  L+L++N+   + 
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN- 360

Query: 208 PDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
                   N++  ++        I   + + 
Sbjct: 361 -SLRALFRNVARPAVDDADQHCKIDYQLEHG 390

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  115 bits (289), Expect = 2e-27
 Identities = 60/347 (17%), Positives = 103/347 (29%), Gaps = 72/347 (20%)

Query: 174 SFMNNLTG---SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGT 230
           SF N ++G      S+              N     + + L  +   S L L    LS +
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-S 73

Query: 231 IPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGL 290
           +P ++                            P +    I  N    L           
Sbjct: 74  LPDNLP---------------------------PQITVLEITQNALISL----------- 95

Query: 291 IPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNL 350
            PE  ++    L  L   +N++  ++P       +L+ L V NN+L+  +P        L
Sbjct: 96  -PELPAS----LEYLDACDNRL-STLPELPA---SLKHLDVDNNQLT-MLPELPA---LL 142

Query: 351 RMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410
             +    N+ +  +P    +L+    L V  N L   +P      ++L   + S N L  
Sbjct: 143 EYINADNNQLT-MLPELPTSLE---VLSVRNNQLT-FLPELPESLEAL---DVSTNLLE- 193

Query: 411 TIPPQLFGLSSLS---ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGS 467
           ++P             I      N  T  +P  + +L     + +  N LS  I  SL  
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 468 CTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLA 514
            T+          F           R L   D             ++
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPL--ADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (260), Expect = 1e-23
 Identities = 42/339 (12%), Positives = 95/339 (28%), Gaps = 70/339 (20%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
                                + N    ++  E   + +   L LN  ++   +P  +  
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAV-SLLKEC-LINQFSELQLNRLNL-SSLPDNL-- 78

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
              I +++++ N  L ++P    SL     L +  N L+ ++P    +L     L +  N
Sbjct: 79  PPQITVLEITQNA-LISLPELPASLEY---LDACDNRLS-TLPELPASLK---HLDVDNN 130

Query: 202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
            +   +P+       L +++   N L+  +P                             
Sbjct: 131 QL-TMLPELPA---LLEYINADNNQLT-MLPELP-------------------------- 159

Query: 262 TLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIG 321
              +L+            L + +N    L PE   +    L +L +  N +  S+P    
Sbjct: 160 --TSLEV-----------LSVRNNQLTFL-PELPES----LEALDVSTNLL-ESLPAVPV 200

Query: 322 KLVNLRR----LYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377
           +  +            N+++  IP  I  L     + +  N  S +      + +     
Sbjct: 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPD 258

Query: 378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQL 416
                    ++             +             +
Sbjct: 259 YHGPRIYF-SMSDGQQNTLHRPLADAVTAWFPENKQSDV 296

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (259), Expect = 1e-23
 Identities = 57/280 (20%), Positives = 93/280 (33%), Gaps = 41/280 (14%)

Query: 254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIF 313
               D+       +           L   N N    L+ EC+       + L L+   + 
Sbjct: 24  GTYADYFSAWDKWEKQA--------LPGENRNEAVSLLKECLI---NQFSELQLNRLNL- 71

Query: 314 GSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKM 373
            S+P  +     +  L +  N L  ++P     L+ L       NR S  +P    +LK 
Sbjct: 72  SSLPDNLPP--QITVLEITQNALI-SLPELPASLEYLDA---CDNRLS-TLPELPASLK- 123

Query: 374 LIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF 433
              L+V  N L   +P      + +   N   N L+  +P     L  L     +  N  
Sbjct: 124 --HLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELPTSLEVL----SVRNNQL 172

Query: 434 TGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLL----MQGNKFYGPIPSSL 489
           T  LP    +L+    LD+S NLL   +P         E+       + N+    IP ++
Sbjct: 173 T-FLPELPESLE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENI 226

Query: 490 RSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            SL          N LS  I + L+      + +      
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 7/109 (6%)

Query: 86  SISPYIGNLSFLRR----LHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
           S+                     N  TH IP  I  L     + L +N +   I  ++S+
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNL 190
            +              ++     +        +       +  S +  +
Sbjct: 253 QTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (284), Expect = 5e-27
 Identities = 77/354 (21%), Positives = 132/354 (37%), Gaps = 40/354 (11%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
           +   L  L L+ N  +  + P     L  LR L L +N +   IP  + +  SN+  +D+
Sbjct: 54  SFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDI 111

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIP 208
           S N+ +  +    F  L  +K L    N+L   I   +   L+S+ +L+L   N+     
Sbjct: 112 SENK-IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPT 169

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQ 267
           + L +L  L  L L    ++  I    F R   +    +        +  +      NL 
Sbjct: 170 EALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLT 227

Query: 268 HFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNL 326
              I   N T    +       L           L  L L  N I  +I   +  +L+ L
Sbjct: 228 SLSITHCNLTA---VPYLAVRHL---------VYLRFLNLSYNPI-STIEGSMLHELLRL 274

Query: 327 RRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQ 385
           + + +   +L+   P A   L  LR+L +SGN+ +  +  SV  ++  L  L +  N L 
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

Query: 386 GTIPSSLCQC------KSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF 433
                  C C      +    +NF++   +   P  + G         L  N+F
Sbjct: 334 -------CDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYF 380

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (283), Expect = 8e-27
 Identities = 75/367 (20%), Positives = 121/367 (32%), Gaps = 68/367 (18%)

Query: 95  SFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQ 154
           +  R L L  N        E      L  L LN N +    P   +   N+  + L  N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 155 LLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGY 213
           L   IP   F  LS +  L    N +   +     +L ++  L +  N++          
Sbjct: 92  L-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 214 LENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVF 273
           L +L  L+L    L+ +IP+   +                         L  L    +  
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSH------------------------LHGLIVLRLRH 185

Query: 274 NNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN 333
            N   +    D +F  L           L  L + +     ++ P     +NL  L + +
Sbjct: 186 LNINAI---RDYSFKRL---------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC 393
             L+     A+  L  LR L +S N  S  I                         S L 
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIE-----------------------GSMLH 269

Query: 394 QCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLD 451
           +   L  I      L+  + P  F GL+ L + L++S N  T +L   V  ++ NL  L 
Sbjct: 270 ELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRV-LNVSGNQLT-TLEESVFHSVGNLETLI 326

Query: 452 ISGNLLS 458
           +  N L+
Sbjct: 327 LDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 4e-17
 Identities = 50/239 (20%), Positives = 85/239 (35%), Gaps = 35/239 (14%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
               T    L L  N+I  ++         +L  L +  N +S   P A  +L NLR LG
Sbjct: 28  EGIPTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 355 MSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP 413
           +  NR    IPL V   L  L +L++SEN +                           + 
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-------------------------ILL 120

Query: 414 PQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPI-SLGSCTS 470
             +F  L +L  SL++  N     +       L +L  L +    L+  IP  +L     
Sbjct: 121 DYMFQDLYNL-KSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHG 177

Query: 471 LEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
           L  L ++          S + L  L V + +       +         L ++++++ +L
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (269), Expect = 6e-25
 Identities = 78/410 (19%), Positives = 140/410 (34%), Gaps = 36/410 (8%)

Query: 92  GNLSFLRRLHLDNNNFTH-AIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
                L+ L L  N F    I  E G + +L+ L L+   +       ++  +   ++ +
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR----- 205
                      +   L         +   T      + ++S     +L  +NI       
Sbjct: 147 LGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 206 ------SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFN---RSSITTFSVVLNRMQGNIP 256
                 SI   L     LS L+L     +      I      +++  FS+   ++QG   
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ-- 262

Query: 257 LDFGFTLPNLQHFGIVFNNFTELLLLN-DNNFGGLIPECISNFSTTLASLFLDNNKIFGS 315
                   + + F     +   L +    ++  G     I    + +       +     
Sbjct: 263 -------LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 316 IPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVG---NLK 372
                 K+     L   NN L+ T+    G L  L  L +  N+    +         +K
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK 374

Query: 373 MLIQLEVSENFLQGTIPSSLCQC-KSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRN 431
            L QL++S+N +        C   KSL+ +N S N L+ TI   L     + + LDL  N
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKV-LDLHSN 431

Query: 432 HFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF 481
               S+P +V  L+ L  L+++ N L           TSL+K+ +  N +
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (254), Expect = 5e-23
 Identities = 78/443 (17%), Positives = 144/443 (32%), Gaps = 19/443 (4%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
              L++  N  +     +I  L +LR L +++N I     +       +  +DLS N+ L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-L 81

Query: 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSS--LGNLSSIIRLSLTYNNIARSIPDTLGYL 214
             I         +K L    N    ++P     GN+S +  L L+  ++ +S    + +L
Sbjct: 82  VKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 215 ENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVL--NRMQGNIPLDFGFTLPNLQHFGIV 272
                L + G               +  +  +V   N+    I      T+ NL+   I 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 273 FNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNN--KIFGSIPPGIGKLVNLRRLY 330
                       +    L      +  T        N+  +I   +        ++  + 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
           +           +   L+ L +  +  + F             +     + +  +     
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVG---NLKNL 447
              +    + ++FS N L+ T+      L+ L   L L  N     L         +K+L
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELET-LILQMNQLK-ELSKIAEMTTQMKSL 376

Query: 448 GVLDISGN-LLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506
             LDIS N +   E         SL  L M  N     I   L     + V D   N + 
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

Query: 507 GEIPKFLAGFKLLENVNLSYNDL 529
             IPK +   + L+ +N++ N L
Sbjct: 435 -SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 53/298 (17%), Positives = 102/298 (34%), Gaps = 27/298 (9%)

Query: 74  FCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRL---RRLRGLTLNNNS 130
                       SI   +     L  L L+N   T      I +L     +   +++N  
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 131 IGGEIPATMSRCSNIILMDLSVNQLLGN---IPPE--FGSLSKIKDLRSFMNNLTGSIPS 185
           + G++       S   L  LS++Q++ +    P    +   S +      ++        
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 186 SLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIP--SSIFNR-SSIT 242
               +S  + L  + N +  ++ +  G+L  L  L L  N L   +   + +  +  S+ 
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQ 377

Query: 243 TFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTL 302
              +  N +  +          +L             L ++ N     I  C       +
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLS-----------LNMSSNILTDTIFRC---LPPRI 423

Query: 303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
             L L +NKI  SIP  + KL  L+ L V +N+L          L +L+ + +  N +
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 37/245 (15%), Positives = 78/245 (31%), Gaps = 18/245 (7%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
            + S     L +  N I   +    I  L  LR L + +N++     S     Q L  L 
Sbjct: 17  KDLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75

Query: 355 MSGNRFSGNIPLSVGNLKMLIQLEVSENFLQG-TIPSSLCQCKSLIGINFSKNNLSGTIP 413
           +S N+      +S      L  L++S N      I         L  +  S  +L  +  
Sbjct: 76  LSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 414 PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLE- 472
             +  L+   + L L   +       +   L++     +     + +    +   +    
Sbjct: 133 LPIAHLNISKVLLVLGETY---GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 473 --------KLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNL 524
                   K +++ NK    +    +      + +   NN+      F+   +L+ +  +
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 525 SYNDL 529
            Y  +
Sbjct: 250 WYFSI 254

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (256), Expect = 2e-23
 Identities = 77/439 (17%), Positives = 130/439 (29%), Gaps = 79/439 (17%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
              L+ L  L   N++ T      I +L  L  L   +N+I   +   +S+ +N+  +  
Sbjct: 38  EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLAC 92

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
             N+ L N+      L+K+  L    N LT      +     +  L+   N +   I   
Sbjct: 93  DSNK-LTNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTL-TEID-- 143

Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
           + +   L+ L    N     +  +                               L    
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVT---------------------------PQTQLTTLD 176

Query: 271 IVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY 330
             FN  TEL      +               L  L  D N I   +   + + + L  L 
Sbjct: 177 CSFNKITEL------DVSQN---------KLLNRLNCDTNNIT-KLD--LNQNIQLTFLD 218

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
             +NKL+  I   +  L  L     S N  +    L V  L  L  L   +  L   I  
Sbjct: 219 CSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EID- 270

Query: 391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL 450
            L     LI            +   +   + L   LD      T    +++     L  L
Sbjct: 271 -LTHNTQLIYFQAEGCRKIKELD--VTHNTQLY-LLDCQAAGIT---ELDLSQNPKLVYL 323

Query: 451 DISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIP 510
            ++   L+    + +   T L+ L            SS+  +  L+    A+        
Sbjct: 324 YLNNTELTE---LDVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPK 378

Query: 511 KFLAGFKLLENVNLSYNDL 529
           + L    L   V+    D 
Sbjct: 379 ETLTNNSLTIAVSPDLLDQ 397

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 59/409 (14%), Positives = 126/409 (30%), Gaps = 55/409 (13%)

Query: 121 LRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLT 180
                     +      +  + + +  +D   + +          L+ +  L    NN+T
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT 77

Query: 181 GSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSS 240
            ++   L   +++  L+   N +  ++   +  L  L++L+   N L+  +  S      
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-KLDVSQN--PL 128

Query: 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFST 300
           +T  +   N +     +D       L       N     L +                 T
Sbjct: 129 LTYLNCARNTLT---EIDVS-HNTQLTELDCHLNKKITKLDVTPQ--------------T 170

Query: 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
            L +L    NKI   +   + +   L RL    N ++  +   +     L  L  S N+ 
Sbjct: 171 QLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL 224

Query: 361 SGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLS 420
           +    + V  L  L   + S N L   +  S      L  ++  + +L   I      L+
Sbjct: 225 TE---IDVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EID-----LT 272

Query: 421 SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK 480
             +  +            ++V +   L +LD     ++    + L     L  L +   +
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTE 329

Query: 481 FYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
                 S    L+ LS  +    ++  +    +     L N   +    
Sbjct: 330 LTELDVSHNTKLKSLSCVN---AHIQ-DFS-SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 46/326 (14%), Positives = 92/326 (28%), Gaps = 43/326 (13%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
           + + + L  L    N        ++    +L  L  + N I  E+   +S+   +  ++ 
Sbjct: 144 VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNC 198

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
             N +      +     ++  L    N LT  I   +  L+ +     + N +   +  +
Sbjct: 199 DTNNITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL-TELDVS 251

Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
              L  L+ L      L   I  +   +             +    LD       L    
Sbjct: 252 T--LSKLTTLHCIQTDLL-EIDLTHNTQLI----YFQAEGCRKIKELDVT-HNTQLYLLD 303

Query: 271 IVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY 330
                 TEL      +               L  L+L+N ++   +   +     L+ L 
Sbjct: 304 CQAAGITEL------DLSQN---------PKLVYLYLNNTEL-TELD--VSHNTKLKSLS 345

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQG---T 387
             N  +     S +G +  L     +  +       ++ N  + I +        G    
Sbjct: 346 CVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

Query: 388 IPSSLCQCKSLIGINFSKNNLSGTIP 413
           I               +  NLS   P
Sbjct: 404 IEPGDGGVYDQATNTITWENLSTDNP 429

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (256), Expect = 2e-23
 Identities = 86/396 (21%), Positives = 150/396 (37%), Gaps = 31/396 (7%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPA-TMSRCSNIILMDLSVNQL 155
           +  + L  N+          RL+ L+ L +   + G  I   T    S++I++ L  NQ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 156 LGNIPPE-FGSLSKIKDLRSFMNNLTGSI--PSSLGNLSSIIRLSLTYNNIARSIPDTL- 211
           L  +    F  L+ ++ L     NL G++   +    L+S+  L L  NNI +  P +  
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 212 GYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGI 271
             +     L L  N +  +I            F+  L R+      D        +  G 
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFT--LLRLSSITLQDMNEYWLGWEKCGN 207

Query: 272 VFNNFT-ELLLLNDNNFGGLIPECISN--FSTTLASLFLDNNKIFGSIPPGIGKLVNLRR 328
            F N +   L L+ N F   + +   +    T + SL L N+   GS         +   
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-TNFKDPDN 266

Query: 329 LYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGT 387
                 + S            ++   +S ++    +  SV  +   L QL +++N +   
Sbjct: 267 FTFKGLEAS-----------GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLK 445
             ++      L+ +N S+N L  +I  ++F  L  L + LDLS NH   +L  +    L 
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEV-LDLSYNHIR-ALGDQSFLGLP 371

Query: 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF 481
           NL  L +  N L           TSL+K+ +  N +
Sbjct: 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 3e-22
 Identities = 71/383 (18%), Positives = 139/383 (36%), Gaps = 49/383 (12%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
            L  L+ L ++       I       L  L  L L+ N    ++     +  +N+ ++ L
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTL 110

Query: 151 SVNQLLGNIPPE--FGSLSKIKDLRSFMNNLTGSIPSSL-GNLSSIIRLSLTYNNIARSI 207
           +   L G +     F  L+ ++ L    NN+    P+S   N+     L LT+N +    
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 208 PDTLG----------YLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPL 257
            + L            L +++   +    L      + F  +SITT  +  N  + ++  
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 258 DFGFTLPNLQ-HFGIVFNNFTELLLLNDNNFGGLIPE-CISNFSTTLASLFLDNNKIFGS 315
            F   +   +    I+ N++         NF            ++ + +  L  +KIF +
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-A 289

Query: 316 IPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML 374
           +   +     +L +L +  N+++    +A   L +L  L +S N       +     + L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS---IDSRMFENL 346

Query: 375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHF 433
            +LEV                     ++ S N++   +  Q F GL +L   L L  N  
Sbjct: 347 DKLEV---------------------LDLSYNHIR-ALGDQSFLGLPNLK-ELALDTNQL 383

Query: 434 TGSLPIEV-GNLKNLGVLDISGN 455
             S+P  +   L +L  + +  N
Sbjct: 384 K-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.0 bits (221), Expect = 5e-19
 Identities = 65/381 (17%), Positives = 116/381 (30%), Gaps = 49/381 (12%)

Query: 191 SSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLN 249
           + +  + L+ N+IA     +   L++L FL +        I ++ F   SS+    +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 250 RMQGNIPLDFGFTLPNLQHFGI-------------VFNNFTEL--LLLNDNNFGGLIPEC 294
           +    +       L NL+   +              F   T L  L+L DNN   + P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 295 ISNFSTTLASLFLDNNKIFGSIPPGI---GKLVNLRRLYVWNNKL--------SGTIPSA 343
                     L L  NK+  SI        +  +   L + +  L               
Sbjct: 149 FFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 344 IGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCK------- 396
                ++  L +SGN F  ++     +     +++         + SS            
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 397 --------SLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKN 446
                    +   + SK+ +   +   +F   + L   L L++N     +       L +
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQ-LTLAQNEIN-KIDDNAFWGLTH 324

Query: 447 LGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506
           L  L++S N L         +   LE L +  N        S   L  L       N L 
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

Query: 507 GEIPKFLAGFKLLENVNLSYN 527
                       L+ + L  N
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTN 405

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 64/346 (18%), Positives = 107/346 (30%), Gaps = 81/346 (23%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
              L L NN  T     +   L+ L  L L NN I                         
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI------------------------- 88

Query: 157 GNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLE 215
             I P  F  L K++ L    N L   +P  +    ++  L +  N I +        L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 216 NLSFLSLGGNML-SGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFN 274
            +  + LG N L S  I +  F                          +  L +  I   
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQG------------------------MKKLSYIRIADT 181

Query: 275 NFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWN 333
           N T    +                  +L  L LD NKI   +       L NL +L +  
Sbjct: 182 NITT---IPQGLP------------PSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSF 225

Query: 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC 393
           N +S     ++ +  +LR L ++ N+    +P  + + K +  + +  N +     +  C
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 394 Q------CKSLIGINFSKNNLSGT-IPPQLF-GLSSLSISLDLSRN 431
                    S  G++   N +    I P  F  +   + ++ L   
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA-AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 66/238 (27%), Positives = 95/238 (39%), Gaps = 14/238 (5%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
            +     A L L NNKI   I  G    L NL  L + NNK+S   P A   L  L  L 
Sbjct: 48  KDLPPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106

Query: 355 MSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNL-SGTIP 413
           +S N+      L     K L +L V EN +     S       +I +    N L S  I 
Sbjct: 107 LSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 414 PQLF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIP-ISLGSCTSL 471
              F G+  LS  + ++  + T    I  G   +L  L + GN ++ ++   SL    +L
Sbjct: 164 NGAFQGMKKLSY-IRIADTNITT---IPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNL 218

Query: 472 EKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            KL +  N        SL +   L       N L  ++P  LA  K ++ V L  N++
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 23/270 (8%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
           T LL L +N    +      N    L +L L NNKI   I PG    LV L RLY+  N+
Sbjct: 54  TALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQ 111

Query: 336 LSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTI--PSSL 392
           L   +P  +   + L+ L +  N  +  +  SV   L  +I +E+  N L+ +     + 
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 393 CQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLD 451
              K L  I  +  N++ TIP  L    SL+  L L  N  T  +       L NL  L 
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLT-ELHLDGNKIT-KVDAASLKGLNNLAKLG 222

Query: 452 ISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG---- 507
           +S N +S     SL +   L +L +  NK    +P  L   + + V     NN+S     
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 508 --EIPKFLAGFKLLENVNLSYNDLGARYVP 535
               P +         V+L  N +    + 
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 61/339 (17%), Positives = 110/339 (32%), Gaps = 59/339 (17%)

Query: 153 NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLG 212
           +  L  +P +    + + DL+   N +T        NL ++  L L  N I++  P    
Sbjct: 40  DLGLEKVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97

Query: 213 YLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIV 272
            L  L  L L  N L   +P  +                              LQ   + 
Sbjct: 98  PLVKLERLYLSKNQLK-ELPEKMP---------------------------KTLQELRVH 129

Query: 273 FNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKI-FGSIPPGI-GKLVNLRRLY 330
            N  T+   +  + F GL           +  + L  N +    I  G    +  L  + 
Sbjct: 130 ENEITK---VRKSVFNGL---------NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIP 389
           + +  ++ TIP   G   +L  L + GN+ +  +  +    L  L +L +S N +     
Sbjct: 178 IADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 390 SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG------SLPIEVGN 443
            SL     L  ++ + N L   +P  L     +   + L  N+ +         P     
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ-VVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 444 LKNLGVLDISGN-LLSGEIPISLGSC-TSLEKLLMQGNK 480
             +   + +  N +   EI  S   C      + +   K
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 9e-18
 Identities = 46/281 (16%), Positives = 100/281 (35%), Gaps = 38/281 (13%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEIGR-LRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLS 151
           NL  L  L L NN  +  I P     L +L  L L+ N +  E+P  M +   +  + + 
Sbjct: 74  NLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQL-KELPEKMPK--TLQELRVH 129

Query: 152 VNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSI--PSSLGNLSSIIRLSLTYNNIARSIP 208
            N+ +  +    F  L+++  +    N L  S     +   +  +  + +   NI  +IP
Sbjct: 130 ENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIP 187

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQ 267
             L    +L+ L L GN ++  + ++     +++    +  N +   +        P+L+
Sbjct: 188 QGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLR 243

Query: 268 HFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG-------I 320
              +  N   ++                      +  ++L NN I  +I           
Sbjct: 244 ELHLNNNKLVKV----PGGLADH---------KYIQVVYLHNNNI-SAIGSNDFCPPGYN 289

Query: 321 GKLVNLRRLYVWNNKLSGTI--PSAIGDLQNLRMLGMSGNR 359
            K  +   + +++N +      PS    +     + +   +
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 92  GNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
           G    L  LHLD N  T  +       L  L  L L+ NSI      +++   ++  + L
Sbjct: 189 GLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSS-------LGNLSSIIRLSLTYNNI 203
           + N+L+  +P        I+ +    NN++ +I S+           +S   +SL  N +
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 204 ARSI--PDTLGYLENLSFLSLGGN 225
                 P T   +   + + LG  
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 9e-21
 Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 8/235 (3%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
               +    L L  N I   I       L +L  L +  N +      A   L +L  L 
Sbjct: 71  QGIPSNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 355 MSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP 413
           +  N  +  IP      L  L +L +  N ++     +  +  SL+ ++  +      I 
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 414 PQLF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLE 472
              F GL +L   L+L   +    +P  +  L  L  L++SGN      P S    +SL+
Sbjct: 189 EGAFEGLFNLK-YLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 473 KLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYN 527
           KL +  ++      ++   L  L   + A NNLS          + L  ++L +N
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 62/291 (21%), Positives = 106/291 (36%), Gaps = 51/291 (17%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
             ++       +  +P  I      R L L  N+I                         
Sbjct: 56  FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQ------------------------ 88

Query: 157 GNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP-DTLGYL 214
             I  + F  L  ++ L+   N++      +   L+S+  L L  N +   IP     YL
Sbjct: 89  -MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYL 146

Query: 215 ENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVF 273
             L  L L  N +  +IPS  FNR  S+    +   +    I       L NL++  +  
Sbjct: 147 SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 274 NNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVW 332
            N  ++      N   L           L  L +  N     I PG    L +L++L+V 
Sbjct: 206 CNIKDM-----PNLTPL---------VGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVM 250

Query: 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSEN 382
           N+++S    +A   L +L  L ++ N  S ++P  +   L+ L++L +  N
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 48/247 (19%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
           +L  L  L L  N+    I       L  L  L L +N +   IP+      S +  + L
Sbjct: 97  HLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWL 154

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLR-SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
             N  + +IP   F  +  +  L    +  L      +   L ++  L+L   NI + +P
Sbjct: 155 RNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMP 212

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQH 268
             L  L  L  L + GN     I    F+                         L +L+ 
Sbjct: 213 -NLTPLVGLEELEMSGNHFP-EIRPGSFHG------------------------LSSLKK 246

Query: 269 FGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLR 327
             ++ +  +    +  N F GL          +L  L L +N +  S+P  +   L  L 
Sbjct: 247 LWVMNSQVSL---IERNAFDGL---------ASLVELNLAHNNL-SSLPHDLFTPLRYLV 293

Query: 328 RLYVWNN 334
            L++ +N
Sbjct: 294 ELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 21/199 (10%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
            L+ L  L L +N  T  IP      L +LR L L NN I   IP+   +R  +++ +DL
Sbjct: 121 GLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDL 178

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD 209
              + L  I    F  L  +K L   M N+   +P +L  L  +  L ++ N+     P 
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPG 236

Query: 210 TLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQH 268
           +   L +L  L +  + +S  I  + F+  +S+   ++  N +  ++P D    L  L  
Sbjct: 237 SFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVE 294

Query: 269 FGIVFNNFTELLLLNDNNF 287
                      L L+ N +
Sbjct: 295 -----------LHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 42/208 (20%), Positives = 73/208 (35%), Gaps = 11/208 (5%)

Query: 325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL 384
              ++      LS  +P  I    N R L +  N        +  +L  L  L++  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 385 QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEV-G 442
           +     +     SL  +    N L+  IP   F  LS L   L L  N    S+P     
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLR-ELWLRNNPIE-SIPSYAFN 168

Query: 443 NLKNLGVLDISG-NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
            + +L  LD+     L      +     +L+ L +        +P+ L  L GL   + +
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMS 226

Query: 502 QNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            N+     P    G   L+ + +  + +
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 89  PYIGNLSFLRRLHLDNNNFTHAIPPE-IGRLRRLRGLTLNNNSIGGEIPATMSRCSNIIL 147
           P +  L  L  L +  N+F   I P     L  L+ L + N+ +           ++++ 
Sbjct: 212 PNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 148 MDLSVNQLLGNIPPE-FGSLSKIKDLR 173
           ++L+ N  L ++P + F  L  + +L 
Sbjct: 271 LNLAHNN-LSSLPHDLFTPLRYLVELH 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.8 bits (231), Expect = 9e-21
 Identities = 61/269 (22%), Positives = 100/269 (37%), Gaps = 22/269 (8%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
           T LL L +N+   L  +        L +L L NNKI   I       L  L++LY+  N 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNH 113

Query: 336 LSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT-IPSSLCQ 394
           L   IP  +    +L  L +  NR           L+ +  +E+  N L+ +        
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 395 CKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDIS 453
              L  +  S+  L+  IP  L    +L+  L L  N    ++ +E       L  L + 
Sbjct: 171 GLKLNYLRISEAKLT-GIPKDLP--ETLN-ELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225

Query: 454 GNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIP--- 510
            N +      SL    +L +L +  NK    +P+ L  L+ L V     NN++ ++    
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

Query: 511 ----KFLAGFKLLENVNLSYNDLGARYVP 535
                F         ++L  N +    V 
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 66/340 (19%), Positives = 115/340 (33%), Gaps = 70/340 (20%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
              L L NN+ +     +   L+ L  L L NN I                         
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI------------------------- 90

Query: 157 GNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLE 215
             I  + F  L K++ L    N+L   IP +L   SS++ L +  N I +        L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 216 NLSFLSLGGNML-SGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFN 274
           N++ + +GGN L +       F+   +    +   ++   IP D       L    +  N
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD---LPETLNELHLDHN 203

Query: 275 NFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWN 333
                  +   +             + L  L L +N+I   I  G    L  LR L++ N
Sbjct: 204 KIQA---IELEDLLRY---------SKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDN 250

Query: 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC 393
           NKLS  +P+ + DL+ L+++ +  N  +                +V  N           
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT----------------KVGVNDFCPV--GFGV 291

Query: 394 QCKSLIGINFSKNNLS-GTIPPQLF-GLSSLSISLDLSRN 431
           +     GI+   N +    + P  F  ++    ++     
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRL-AIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 8e-17
 Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 43/271 (15%)

Query: 93  NLSFLRRLHLDNNNFTH-----------------------AIPPEIGRLRRLRGLTLNNN 129
            L  L  L L NN  +                         IPP +     L  L +++N
Sbjct: 76  GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDN 133

Query: 130 SIGGEIPATMSRCSNIILMDLSVNQL-LGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLG 188
            I        S   N+  +++  N L      P      K+  LR     LT  IP  L 
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL- 191

Query: 189 NLSSIIRLSLTYNNIARSIPD-TLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSV 246
              ++  L L +N I ++I    L     L  L LG N +   I +   +   ++    +
Sbjct: 192 -PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHL 248

Query: 247 VLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLF 306
             N++   +P      L  LQ   +  NN T+   +  N+F  +              + 
Sbjct: 249 DNNKLS-RVPAGL-PDLKLLQVVYLHTNNITK---VGVNDFCPVGFG---VKRAYYNGIS 300

Query: 307 LDNNKI-FGSIPPGI-GKLVNLRRLYVWNNK 335
           L NN + +  + P     + +   +   N K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 92  GNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
                L  LHLD+N     I  E   R  +L  L L +N I      ++S    +  + L
Sbjct: 190 DLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSS-------LGNLSSIIRLSLTYNNI 203
             N+ L  +P     L  ++ +    NN+T  +  +           +    +SL  N +
Sbjct: 249 DNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 204 ARSI--PDTLGYLENLSFLSLGGN 225
                 P T   + +   +  G  
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNY 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 62/285 (21%), Positives = 101/285 (35%), Gaps = 49/285 (17%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
             LT S+P+ +   SS  RL L  N +          L  L+ LSL  N LS        
Sbjct: 17  KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-------- 65

Query: 237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECIS 296
                                   F   +L++  + FN    +     +NF GL      
Sbjct: 66  ---------------FKGCCSQSDFGTTSLKYLDLSFNGVITM----SSNFLGL------ 100

Query: 297 NFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355
                L  L   ++ +       +   L NL  L + +             L +L +L M
Sbjct: 101 ---EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 356 SGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQC-KSLIGINFSKNNLSGTIP 413
           +GN F  N    +   L+ L  L++S+  L+  +  +      SL  +N S NN   ++ 
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLD 215

Query: 414 PQLF-GLSSLSISLDLSRNHFTGSLPIEV--GNLKNLGVLDISGN 455
              +  L+SL   LD S NH   +   +       +L  L+++ N
Sbjct: 216 TFPYKCLNSLQ-VLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 12/227 (5%)

Query: 309 NNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV 368
           N+K   S+P GI    +  RL + +NKL          L  L  L +S N  S       
Sbjct: 15  NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCS 71

Query: 369 G---NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSI 424
                   L  L++S N +  T+ S+    + L  ++F  +NL       +F  L +L I
Sbjct: 72  QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-I 129

Query: 425 SLDLSRNHFTGSLPIEV-GNLKNLGVLDISGN-LLSGEIPISLGSCTSLEKLLMQGNKFY 482
            LD+S  H        +   L +L VL ++GN      +P       +L  L +   +  
Sbjct: 130 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 483 GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
              P++  SL  L V + + NN              L+ ++ S N +
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 48/270 (17%), Positives = 96/270 (35%), Gaps = 43/270 (15%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSI--GGEIPATMSRCSNIILMDLSVNQ 154
             RL L++N           +L +L  L+L++N +   G    +    +++  +DLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 155 LLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSL-GNLSSIIRLSLTYNNIARSIPDTLGY 213
           ++  +   F  L +++ L    +NL      S+  +L ++I L +++ +   +       
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 214 LENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVF 273
           L +L  L + GN         IF                          L NL    +  
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTE------------------------LRNLTFLDLSQ 184

Query: 274 NNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVW 332
               +   L+   F  L         ++L  L + +N    S+       L +L+ L   
Sbjct: 185 CQLEQ---LSPTAFNSL---------SSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYS 231

Query: 333 NNKLSGTIPSAIGDLQ-NLRMLGMSGNRFS 361
            N +  +    +     +L  L ++ N F+
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 21/226 (9%)

Query: 93  NLSFLRRLHLDNNNFT--HAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
            L+ L +L L +N  +              L+ L L+ N +   + +       +  +D 
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDF 108

Query: 151 SVNQLLGNIPPE--FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSI- 207
             +  L  +     F SL  +  L     +   +       LSS+  L +  N+   +  
Sbjct: 109 QHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 208 PDTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNL 266
           PD    L NL+FL L    L   +  + FN  SS+   ++  N    ++       L +L
Sbjct: 168 PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSL 225

Query: 267 QHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKI 312
           Q            L  + N+      + + +F ++LA L L  N  
Sbjct: 226 QV-----------LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSN 144
           ++S     L  L  L   ++N        +   LR L  L +++           +  S+
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 145 IILMDLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
           + ++ ++ N    N  P+ F  L  +  L      L    P++  +LSS+  L++++NN 
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
                     L +L  L    N +  T      
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 28/139 (20%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLS 151
            LS L  L +  N+F     P+I   LR L  L L+   +                    
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-------------------- 187

Query: 152 VNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
                  + P  F SLS ++ L    NN           L+S+  L  + N+I  S    
Sbjct: 188 -----EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 211 LGYL-ENLSFLSLGGNMLS 228
           L +   +L+FL+L  N  +
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.2 bits (229), Expect = 7e-20
 Identities = 67/406 (16%), Positives = 139/406 (34%), Gaps = 30/406 (7%)

Query: 92  GNLSFLRRLHLDNNNFTH-AIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
             ++ LR L L  N+F    +  E G L +L  L L+           ++      ++  
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI-----AR 205
            V+  +     E   +     L    +  +        +++++  L L+   +      R
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPS-----SIFNRSSITTFSVVLNRMQGNIPL-DF 259
            +          + L++    +  T          F    +   ++    +   I   +F
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 260 GFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
            ++   L+   I        L   +  +              +  L + +      + P 
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFA-------EMNIKMLSISDTPFIHMVCPP 350

Query: 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS--GNIPLSVGNLKMLIQL 377
                +   L    N  + ++      L+ L+ L +  N       + L   N+  L  L
Sbjct: 351 S--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408

Query: 378 EVSENFLQGTIPSSLCQC-KSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS 436
           +VS N L        C   +S++ +N S N L+G++   L     + + LDL  N    S
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKV-LDLHNNRIM-S 464

Query: 437 LPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKF 481
           +P +V +L+ L  L+++ N L   +P       TSL+ + +  N +
Sbjct: 465 IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.2 bits (208), Expect = 3e-17
 Identities = 81/447 (18%), Positives = 158/447 (35%), Gaps = 29/447 (6%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPA-TMSRCSNIILMDLSVNQL 155
            + L L  N+ +    P+I  L  LR L L++N I   +         ++  +D+S N+ 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNR- 111

Query: 156 LGNIPPEFGSLSKIKDLRSFMNNLTGSIPSS--LGNLSSIIRLSLTYNNIARSIPDTLGY 213
           L NI      ++ ++ L    N+    +P     GNL+ +  L L+     +     + +
Sbjct: 112 LQNIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 214 LE-NLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGI 271
           L  +   L L    + G    S+    +++       N +           L +LQ   I
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 272 VFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYV 331
             N+     L+   +     P  ++     + + +  + K+F            +  L +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-----WPRPVEYLNI 283

Query: 332 WNNKLSGTIPSAIGD-----LQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQG 386
           +N  ++  I           L++L +  +    F  +          +    +S +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 387 TIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVG---N 443
                     S   +NF++N  + ++      L  L   L L RN    +         N
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT-LILQRNGLK-NFFKVALMTKN 401

Query: 444 LKNLGVLDISGNLL-SGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQ 502
           + +L  LD+S N L S     +     S+  L +  N   G +   L     + V D   
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHN 459

Query: 503 NNLSGEIPKFLAGFKLLENVNLSYNDL 529
           N +   IPK +   + L+ +N++ N L
Sbjct: 460 NRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.4 bits (180), Expect = 8e-14
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 29/287 (10%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRL---RRLRGLTLNNNSIGGEIPATMSRC 142
           +    +     L  + L +   T     ++ +    R +  L + N +I   I       
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 143 SN-----IILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLS 197
           S      +++  +     L +    +   +++      +++          + SS   L+
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 198 LTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG--NI 255
            T N    S+      L+ L  L L  N L            ++++   +   +    + 
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 256 PLDFGFTLP-NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFG 314
             D       ++             L L+ N   G +  C+      +  L L NN+I  
Sbjct: 419 AYDRTCAWAESILV-----------LNLSSNMLTGSVFRCL---PPKVKVLDLHNNRI-M 463

Query: 315 SIPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRMLGMSGNRF 360
           SIP  +  L  L+ L V +N+L  ++P      L +L+ + +  N +
Sbjct: 464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 61/384 (15%), Positives = 121/384 (31%), Gaps = 40/384 (10%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
            NLT  +P           LSL+ N+I+      + +L  L  L L  N +  ++   +F
Sbjct: 41  RNLT-HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVF 96

Query: 237 NR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL--------------LL 281
                +    V  NR+Q NI       + +L+H  + FN+F  L              L 
Sbjct: 97  LFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152

Query: 282 LNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIP 341
           L+   F  L    +++   +   L L +  I         ++ N   L++  +  S    
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHI-KGGETESLQIPNTTVLHLVFHPNSLFSV 211

Query: 342 SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS----------S 391
                +  L  L +S  + +      +      +    +   +                 
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

Query: 392 LCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS----LDLSRNHFTGSLPIEVGNLKNL 447
               + +  +N     ++  I  + F  S  ++       +    F  S          +
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 448 GVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS- 506
            +  +S +       +   S +S   L    N F   +     +L+ L      +N L  
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391

Query: 507 -GEIPKFLAGFKLLENVNLSYNDL 529
             ++         LE +++S N L
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSL 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 36/175 (20%)

Query: 56  KITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEI 115
             T   F                               L  L+ L L  N          
Sbjct: 364 VFTDSVFQG--------------------------CSTLKRLQTLILQRNGLK-NFFKVA 396

Query: 116 GRLRRLRGLTLNNNSIG----GEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD 171
              + +  L   + S+          T +   +I++++LS N L G++        K+ D
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD 456

Query: 172 LRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD-TLGYLENLSFLSLGGN 225
           L +  N +  SIP  + +L ++  L++  N + +S+PD     L +L ++ L  N
Sbjct: 457 LHN--NRIM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 65/310 (20%), Positives = 105/310 (33%), Gaps = 51/310 (16%)

Query: 156 LGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLE 215
           L +IP   G    +K L    N +T    S L    ++  L LT N I     D+   L 
Sbjct: 43  LNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100

Query: 216 NLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN 275
           +L  L L  N LS  + SS F                          L +L         
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKP------------------------LSSLTF------- 128

Query: 276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNN 334
               L L  N +  L    + +  T L  L + N   F  I       L  L  L +  +
Sbjct: 129 ----LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 335 KLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT------- 387
            L    P ++  +QN+  L +   +    + + V     +  LE+ +  L          
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 388 -IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV-GNLK 445
              +SL +  +   +  +  +L   +   L  +S L   L+ SRN    S+P  +   L 
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLL-ELEFSRNQLK-SVPDGIFDRLT 301

Query: 446 NLGVLDISGN 455
           +L  + +  N
Sbjct: 302 SLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 6e-19
 Identities = 50/263 (19%), Positives = 89/263 (33%), Gaps = 17/263 (6%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
            + L L++N    +    +      L +L L +N I  +I       L +L  L +  N 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNY 111

Query: 336 LSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPS-SLC 393
           LS    S    L +L  L + GN +      S+  +L  L  L V        I      
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 394 QCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI 452
               L  +    ++L  +  P+    + ++S  L L        L I V    ++  L++
Sbjct: 172 GLTFLEELEIDASDLQ-SYEPKSLKSIQNVS-HLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 453 SGNLLSG----EIPI----SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNN 504
               L      E+      SL    +   + +     +  +   L  + GL   +F++N 
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 505 LSGEIPKFLAGFKLLENVNLSYN 527
           L             L+ + L  N
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 42/273 (15%), Positives = 92/273 (33%), Gaps = 38/273 (13%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
               L+ L L +N     I  +    L  L  L L+ N +   + ++     S++  ++L
Sbjct: 74  RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131

Query: 151 SVNQLLGNIPPE--FGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSI 207
             N     +     F  L+K++ LR    +    I       L+ +  L +  +++    
Sbjct: 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 208 PDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQ 267
           P +L  ++N+S L L        +     + +S                         L+
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS-------------------SVECLELR 230

Query: 268 HFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLR 327
              +   +F+EL     N+              T  ++ + +  +F  +   + ++  L 
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKK---------FTFRNVKITDESLF-QVMKLLNQISGLL 280

Query: 328 RLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
            L    N+L          L +L+ + +  N +
Sbjct: 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.5 bits (204), Expect = 3e-17
 Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 16/246 (6%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
           S  +  + SL L NN+I   I      + VNL+ L + +N ++     +   L +L  L 
Sbjct: 48  SGLTEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106

Query: 355 MSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSL-CQCKSLIGINFSKNNLSGTI 412
           +S N  S N+  S    L  L  L +  N  +    +SL      L  +     +    I
Sbjct: 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 413 PPQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTS 470
             + F GL+ L   L++  +    S   +   +++N+  L +        + I +   +S
Sbjct: 166 QRKDFAGLTFLE-ELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 471 LEKLLMQGNKFYGPIPSSLRSLRGLSVWD-------FAQNNLSGEIPKFLAGFKLLENVN 523
           +E L ++         S L +    S+            +    ++ K L     L  + 
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283

Query: 524 LSYNDL 529
            S N L
Sbjct: 284 FSRNQL 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 59/290 (20%), Positives = 104/290 (35%), Gaps = 49/290 (16%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
             ++     N    +P  I      R L L+ N I      +     ++ ++ LS N + 
Sbjct: 45  FSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI- 100

Query: 157 GNIPPE-FGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIPDTLGYL 214
             I    F  L+ +  L  F N LT +IP+ +   LS +  L L  N I          +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 215 ENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFN 274
            +L  L LG       I    F                          L NL++  +   
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEG------------------------LSNLRYLNLAMC 195

Query: 275 NFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWN 333
           N  E+      N   L           L  L L  N +  +I PG    L++L++L++  
Sbjct: 196 NLREI-----PNLTPL---------IKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQ 240

Query: 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSEN 382
           +++     +A  +LQ+L  + ++ N  +  +P  +   L  L ++ +  N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 68/307 (22%), Positives = 110/307 (35%), Gaps = 74/307 (24%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
            NL   +P  +   ++   L+L  N I     ++  +L +L  L L  N +  TI    F
Sbjct: 53  KNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAF 108

Query: 237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECIS 296
           N                         L NL    +  N  T +    +  F  L      
Sbjct: 109 NG------------------------LANLNTLELFDNRLTTI---PNGAFVYL------ 135

Query: 297 NFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVW-NNKLSGTIPSAIGDLQNLRMLG 354
              + L  L+L NN I  SIP     ++ +LRRL +    +LS     A   L NLR L 
Sbjct: 136 ---SKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 355 MSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP 414
           ++           + NL  LI+L+                      ++ S N+LS  I P
Sbjct: 192 LAMCNLR-----EIPNLTPLIKLDE---------------------LDLSGNHLS-AIRP 224

Query: 415 QLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLE 472
             F GL  L   L + ++     +      NL++L  ++++ N L+            LE
Sbjct: 225 GSFQGLMHLQ-KLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 473 KLLMQGN 479
           ++ +  N
Sbjct: 283 RIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 44/269 (16%)

Query: 143 SNIILMDLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
           +N  L++L  NQ+   I    F  L  ++ L+   N++      +   L+++  L L  N
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 202 NIARSIP-DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG 260
            +  +IP     YL  L  L L  N +  +IPS  FNR                      
Sbjct: 123 RL-TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR---------------------- 158

Query: 261 FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320
             +P+L+   +       L  +++  F GL         + L  L L    +     P +
Sbjct: 159 --IPSLRRLDLGELK--RLSYISEGAFEGL---------SNLRYLNLAMCNL--REIPNL 203

Query: 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEV 379
             L+ L  L +  N LS   P +   L +L+ L M  ++    I  +   NL+ L+++ +
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINL 262

Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNL 408
           + N L             L  I+   N  
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 48/247 (19%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPA-TMSRCSNIILMDL 150
           +L  L  L L  N+    I       L  L  L L +N +   IP       S +  + L
Sbjct: 86  HLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWL 143

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLR-SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
             N  + +IP   F  +  ++ L    +  L+     +   LS++  L+L   N+ R IP
Sbjct: 144 RNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIP 201

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQH 268
             L  L  L  L L GN LS  I    F                          L +LQ 
Sbjct: 202 -NLTPLIKLDELDLSGNHLS-AIRPGSFQG------------------------LMHLQK 235

Query: 269 FGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLR 327
             ++ +       +  N F  L          +L  + L +N +   +P  +   L +L 
Sbjct: 236 LWMIQSQIQV---IERNAFDNL---------QSLVEINLAHNNL-TLLPHDLFTPLHHLE 282

Query: 328 RLYVWNN 334
           R+++ +N
Sbjct: 283 RIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 55/237 (23%), Positives = 88/237 (37%), Gaps = 32/237 (13%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
              ST    L L  N+I   I       L +L  L +  N +      A   L NL  L 
Sbjct: 60  DGISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 355 MSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP 413
           +  NR +  IP      L  L +L +  N ++     +  +  SL  ++  +      I 
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 414 PQLF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLE 472
              F GLS+L   L+L+  +    +P  +  L  L  LD+SGN LS   P S      L+
Sbjct: 178 EGAFEGLSNLR-YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 473 KLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
           KL M  ++        ++ +                        + L  +NL++N+L
Sbjct: 235 KLWMIQSQ--------IQVIE----------------RNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 10/188 (5%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
            L+ L  L L +N  T  IP      L +L+ L L NN I   IP+   +R  ++  +DL
Sbjct: 110 GLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDL 167

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD 209
              + L  I    F  LS ++ L   M NL   IP +L  L  +  L L+ N+++   P 
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPG 225

Query: 210 TLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQH 268
           +   L +L  L +  + +   I  + F+   S+   ++  N +   +P D    L +L+ 
Sbjct: 226 SFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLER 283

Query: 269 FGIVFNNF 276
             +  N +
Sbjct: 284 IHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 89  PYIGNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIIL 147
           P +  L  L  L L  N+ +  I P     L  L+ L +  + I            +++ 
Sbjct: 201 PNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 148 MDLSVNQLLGNIPPE-FGSLSKIKDLR 173
           ++L+ N  L  +P + F  L  ++ + 
Sbjct: 260 INLAHNN-LTLLPHDLFTPLHHLERIH 285

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.9 bits (203), Expect = 4e-18
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 8/161 (4%)

Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
            +L  + L N  +   +  GI    N++ L + N   +    + I  L NL  L + G  
Sbjct: 44  NSLTYITLANINV-TDLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99

Query: 360 FSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGL 419
            + +   ++  L  L  L++S +    +I + +     +  I+ S N     I P L  L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTL 158

Query: 420 SSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460
             L  SL++  +       IE  +   L  L      + G+
Sbjct: 159 PELK-SLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 91  IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDL 150
           I     ++ L ++N + T+  P  I  L  L  L +    +  +    +S  +++ L+D+
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
           S +    +I  +  +L K+  +    N     I   L  L  +  L++ ++ +       
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG-- 176

Query: 211 LGYLENLSFLSLGGNMLSG 229
           +     L+ L      + G
Sbjct: 177 IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 9e-12
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 47/222 (21%)

Query: 189 NLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVL 248
              + +   L  ++ A     T   + +L++++L    ++            +T      
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-----------DLTGIE--- 63

Query: 249 NRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLD 308
                           N++   I   + T       N   GL         + L  L + 
Sbjct: 64  -------------YAHNIKDLTINNIHATNY-----NPISGL---------SNLERLRIM 96

Query: 309 NNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV 368
              +     P +  L +L  L + ++    +I + I  L  +  + +S N    +I   +
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL 155

Query: 369 GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410
             L  L  L +  + +       +     L  +      + G
Sbjct: 156 KTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 6/159 (3%)

Query: 322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
                +         S T       + +L  + ++    +    +       +  L ++ 
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINN 75

Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV 441
                T  + +    +L  +     +++    P L GL+SL+  LD+S +    S+  ++
Sbjct: 76  I--HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT-LLDISHSAHDDSILTKI 132

Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK 480
             L  +  +D+S N    +I   L +   L+ L +Q + 
Sbjct: 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
           + +P I  LS L RL +   + T    P +  L  L  L +++++    I   ++    +
Sbjct: 80  NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIA 204
             +DLS N  + +I P   +L ++K L    + +       + +   + +L      I 
Sbjct: 139 NSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 79  ESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPAT 138
             L  + + +     ++ L  + L N N T      I     ++ LT+NN       P  
Sbjct: 28  GLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP-- 83

Query: 139 MSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSL 198
           +S  SN+  + +    +  +  P    L+ +  L    +    SI + +  L  +  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 199 TYNNIARSIPDTLGYLENLSFLSLGGNMLS 228
           +YN     I   L  L  L  L++  + + 
Sbjct: 144 SYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 11/187 (5%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSV 152
                    L  ++          ++  L  +TL N ++       +    NI  + ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 153 NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLG 212
                N  P    LS ++ LR    ++T     +L  L+S+  L ++++    SI   + 
Sbjct: 76  IHA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 213 YLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIV 272
            L  ++ + L  N     I   +     + + ++  + +     ++     P L      
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAF 189

Query: 273 FNNFTEL 279
                  
Sbjct: 190 SQTIGGK 196

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 8e-18
 Identities = 42/217 (19%), Positives = 66/217 (30%), Gaps = 17/217 (7%)

Query: 280 LLLNDNNFGGLIPECISNFS-TTLASLFLDNNKI--FGSIPPGIGKLV--NLRRLYVWNN 334
           L L +    G  P  +   +   L  L L N       +    + + +   L+ L +   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 335 KLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLS----VGNLKMLIQLEVSENFLQ---GT 387
                    +     L  L +S N   G   L           L  L +    ++   G 
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNL 447
             +       L G++ S N+L            S   SL+LS         +  G    L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKL 276

Query: 448 GVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGP 484
            VLD+S N L    P        +  L ++GN F   
Sbjct: 277 SVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 49/282 (17%), Positives = 84/282 (29%), Gaps = 23/282 (8%)

Query: 92  GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR---CSNIILM 148
           G  S    L   +         +I +   L+ LT+    I   I     R    S +  +
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 149 DLSVNQLLGNIPPEFGSLSKIK----DLRSFMNNLTGSIPSSLGNLS--SIIRLSLTYNN 202
            L   ++ G  PP     +       +LR+       +  + L       +  LS+   +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 203 IARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFT 262
                 + +     LS L L  N   G                 VL  ++          
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA-LRNAGMETPSGV 219

Query: 263 LPNLQHFGIVFNNFTELLLLN--DNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320
              L           +L  L+   N+          ++ + L SL L    +   +P G+
Sbjct: 220 CSAL------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL 272

Query: 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG 362
                L  L +  N+L    PS   +L  +  L + GN F  
Sbjct: 273 PA--KLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 47/276 (17%), Positives = 83/276 (30%), Gaps = 30/276 (10%)

Query: 274 NNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN---LRRLY 330
            +   LL   D          I   S +L  L +   +I   I  G  +++    L+ L 
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIK-SLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 331 VWNNKLSGTIPSAIGDLQ--NLRMLGMSGNRFSGNIP----LSVGNLKMLIQLEVSENFL 384
           + N +++GT P  + +    +L +L +    ++        L       L  L +++   
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 385 QGTIPSSLCQCKSLIGINFSKNNLSGTIP----PQLFGLSSLSISLDLSRNHFT---GSL 437
                  +    +L  ++ S N   G              +L   L L         G  
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-VLALRNAGMETPSGVC 220

Query: 438 PIEVGNLKNLGVLDISGNLLSGEIPISLGS-CTSLEKLLMQGNKFY---GPIPSSLRSLR 493
                    L  LD+S N L            + L  L +           +P+ L  L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL- 279

Query: 494 GLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
                D + N L    P        + N++L  N  
Sbjct: 280 -----DLSYNRLD-RNPSPD-ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 7e-12
 Identities = 46/246 (18%), Positives = 80/246 (32%), Gaps = 26/246 (10%)

Query: 293 ECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY-VWNNKLSGTIPSAIGDLQNLR 351
            C  NFS          N +  +     G   +L  L    + +      + I    +L+
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLK 71

Query: 352 MLGMSGNRFSGNIP---LSVGNLKMLIQLEVSENFLQGTIPSSLCQC--KSLIGINFSKN 406
            L +   R    I    L V  +  L +L +    + GT P  L +     L  +N    
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 407 NLSG--TIPPQLFGLSSLSI-SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPI 463
           + +       +L       +  L +++ H       +V     L  LD+S N   GE  +
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 464 SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVN 523
               C                 P    +L+ L++ +      SG      A    L+ ++
Sbjct: 192 ISALC-----------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 524 LSYNDL 529
           LS+N L
Sbjct: 235 LSHNSL 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.0 bits (207), Expect = 4e-17
 Identities = 58/286 (20%), Positives = 104/286 (36%), Gaps = 34/286 (11%)

Query: 263 LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGK 322
           L ++       ++   +             + I      +  LFL+ NK+   I P +  
Sbjct: 42  LNSIDQIIANNSDIKSV-------------QGIQYL-PNVTKLFLNGNKL-TDIKP-LTN 85

Query: 323 LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382
           L NL  L++  NK+   + S++ DL+ L+ L +  N  S    L   +L  L  L +  N
Sbjct: 86  LKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNN 141

Query: 383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVG 442
             + T  + L +   L  ++   N +S  I P L GL+ L  +L LS+NH +    +   
Sbjct: 142 --KITDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQ-NLYLSKNHISDLRALA-- 194

Query: 443 NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQ 502
            LKNL VL++       +      +      +         P   S          D+ +
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG-------DYEK 247

Query: 503 NNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSV 548
            N+   +P+F      +    ++     AR+            T  
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 5e-14
 Identities = 63/342 (18%), Positives = 117/342 (34%), Gaps = 57/342 (16%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
            I P     +   + +L   + T A+      L  +  +  NN+ I   +   +    N+
Sbjct: 13  QIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQG-IQYLPNV 67

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
             + L+ N+L  +I P   +L  +  L    N +   + SSL +L  +  LSL +N I  
Sbjct: 68  TKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGI-S 122

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN 265
            I   L +L  L  L LG N +           + IT  S                 L  
Sbjct: 123 DING-LVHLPQLESLYLGNNKI-----------TDITVLS----------------RLTK 154

Query: 266 LQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN 325
           L    +  N  +++               ++   T L +L+L  N I  S    +  L N
Sbjct: 155 LDTLSLEDNQISDI-------------VPLAGL-TKLQNLYLSKNHI--SDLRALAGLKN 198

Query: 326 LRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ 385
           L  L +++ +      +   +L     +  +         +S  +     +  V  +  +
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS--DDGDYEKPNVKWHLPE 256

Query: 386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLD 427
            T   S       + I  +K    G +   L  + ++S  +D
Sbjct: 257 FTNEVSF-IFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVD 297

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 6e-14
 Identities = 56/318 (17%), Positives = 102/318 (32%), Gaps = 59/318 (18%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
           +      +       P             L   S+   +    +  ++I  +  + + + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI- 55

Query: 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLEN 216
            ++      L  +  L    N LT  I   L NL ++  L L  N I + +  +L  L+ 
Sbjct: 56  KSVQG-IQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKI-KDL-SSLKDLKK 110

Query: 217 LSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNF 276
           L  LSL  N +S            I                     LP L+         
Sbjct: 111 LKSLSLEHNGIS-----------DINGLV----------------HLPQLES-------- 135

Query: 277 TELLLLNDNNFGGLIPECISNFS--TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNN 334
              L L +N         I+  S  T L +L L++N+I   I P +  L  L+ LY+  N
Sbjct: 136 ---LYLGNNKI-----TDITVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKN 185

Query: 335 KLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQ 394
            +  +   A+  L+NL +L +              NL +   ++ ++  L      S   
Sbjct: 186 HI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

Query: 395 CKSLIGINFSKNNLSGTI 412
                 + +     +  +
Sbjct: 244 DYEKPNVKWHLPEFTNEV 261

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 42/258 (16%)

Query: 153 NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLG 212
            Q L  +P    + S+   L    N ++    +S     ++  L L  N +AR       
Sbjct: 20  QQGLQAVPVGIPAASQRIFLHG--NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 213 YLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIV 272
            L  L  L L  N    ++  + F+                         L  L    + 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHG------------------------LGRLHTLHLD 113

Query: 273 FNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYV 331
                E   L    F GL           L  L+L +N +  ++P      L NL  L++
Sbjct: 114 RCGLQE---LGPGLFRGL---------AALQYLYLQDNAL-QALPDDTFRDLGNLTHLFL 160

Query: 332 WNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPS 390
             N++S     A   L +L  L +  NR + ++      +L  L+ L +  N L      
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 391 SLCQCKSLIGINFSKNNL 408
           +L   ++L  +  + N  
Sbjct: 220 ALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 44/242 (18%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
            +R+ L  N  +H         R L  L L++N +     A  +  + +  +DLS N  L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 157 GNIPPE-FGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIPD-TLGY 213
            ++ P  F  L ++  L      L   +       L+++  L L  N + +++PD T   
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRD 151

Query: 214 LENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVF 273
           L NL+ L L GN +S ++P   F                          L +L       
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRG------------------------LHSLDR----- 181

Query: 274 NNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVW 332
                 LLL+ N    + P    +    L +L+L  N +  ++P      L  L+ L + 
Sbjct: 182 ------LLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNL-SALPTEALAPLRALQYLRLN 233

Query: 333 NN 334
           +N
Sbjct: 234 DN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 21/200 (10%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
               L  L L +N     I       L  L  L L++N+    +          +  + L
Sbjct: 54  ACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIP 208
                L  + P  F  L+ ++ L    N L  ++P  +  +L ++  L L  N I+    
Sbjct: 113 DRCG-LQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPE 170

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQ 267
                L +L  L L  N ++  +    F     + T  +  N +   +P +    L  LQ
Sbjct: 171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQ 228

Query: 268 HFGIVFNNFTELLLLNDNNF 287
           +           L LNDN +
Sbjct: 229 Y-----------LRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 46/225 (20%), Positives = 79/225 (35%), Gaps = 34/225 (15%)

Query: 309 NNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV 368
             +   ++P GI      +R+++  N++S    ++    +NL +L +  N  +  I  + 
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAA 75

Query: 369 -GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISL 426
              L +L QL                        + S N    ++ P  F GL  L  +L
Sbjct: 76  FTGLALLEQL------------------------DLSDNAQLRSVDPATFHGLGRLH-TL 110

Query: 427 DLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGP 484
            L R      L   +   L  L  L +  N L   +P  +     +L  L + GN+    
Sbjct: 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 485 IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
              + R L  L      QN ++   P        L  + L  N+L
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 49/291 (16%), Positives = 101/291 (34%), Gaps = 56/291 (19%)

Query: 185 SSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTF 244
                L++ I+++   +N+      T   L+ ++ LS  G  ++           +I   
Sbjct: 13  FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-----------TIEGV 59

Query: 245 SVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLAS 304
                             L NL    +  N  T+L               + N  T +  
Sbjct: 60  Q----------------YLNNLIGLELKDNQITDL-------------APLKNL-TKITE 89

Query: 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI 364
           L L  N +       I  L +++ L + + +++   P  +  L NL++L +  N+ +   
Sbjct: 90  LELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS 145

Query: 365 PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSI 424
           PL+   L  L  L +    +  +  + L     L  +    N +S  I P L  L +L  
Sbjct: 146 PLA--GLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISP-LASLPNLI- 198

Query: 425 SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLL 475
            + L  N  +   P+   N  NL ++ ++   ++ +      +      + 
Sbjct: 199 EVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 56/294 (19%), Positives = 116/294 (39%), Gaps = 34/294 (11%)

Query: 165 SLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGG 224
           +L+    + +  +N+T     +  +L  I  LS     +  +I   + YL NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKD 72

Query: 225 NMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLND 284
           N +  T  + + N + IT   +  N ++    +     L +++   +     T++     
Sbjct: 73  NQI--TDLAPLKNLTKITELELSGNPLKNVSAIA---GLQSIKTLDLTSTQITDV----- 122

Query: 285 NNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAI 344
               GL         + L  L+LD N+I  +    +  L NL+ L + N ++S    + +
Sbjct: 123 TPLAGL---------SNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDL--TPL 169

Query: 345 GDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFS 404
            +L  L  L    N+ S   PL+  +L  LI++ +  N +  +  S L    +L  +  +
Sbjct: 170 ANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLT 225

Query: 405 KNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS 458
              ++      +F  ++L +   +         P  + +       +++ NL S
Sbjct: 226 NQTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 60/285 (21%), Positives = 108/285 (37%), Gaps = 55/285 (19%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSV 152
            L+   ++    +N T  +      L  +  L+     +   I   +   +N+I ++L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKD 72

Query: 153 NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLG 212
           NQ + ++ P   +L+KI +L    N L     S++  L SI  L LT   I  +    L 
Sbjct: 73  NQ-ITDLAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQI--TDVTPLA 126

Query: 213 YLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIV 272
            L NL  L L  N +           ++I+  +                 L NLQ+  I 
Sbjct: 127 GLSNLQVLYLDLNQI-----------TNISPLA----------------GLTNLQYLSIG 159

Query: 273 FNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW 332
               ++L          L         + L +L  D+NKI   I P +  L NL  +++ 
Sbjct: 160 NAQVSDL-----TPLANL---------SKLTTLKADDNKI-SDISP-LASLPNLIEVHLK 203

Query: 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377
           NN++S    S + +  NL ++ ++    +        NL +   +
Sbjct: 204 NNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
            L N  ++    + ++ T+     DL  +  L   G   +  I   V  L  LI LE+ +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV 441
           N +  T  + L     +  +  S N L   +   + GL S+  +LDL+    T   P+  
Sbjct: 73  NQI--TDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSI-KTLDLTSTQITDVTPLA- 126

Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
             L NL VL +  N ++  I   L   T+L+ L +   +      + L +L  L+     
Sbjct: 127 -GLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKAD 181

Query: 502 QNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            N +S +I   LA    L  V+L  N +
Sbjct: 182 DNKIS-DIS-PLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 11/143 (7%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
           ++S  I  L  ++ L L +   T   P  +  L  L+ L L+ N I   I   ++  +N+
Sbjct: 99  NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI-TNISP-LAGLTNL 153

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
             + +   Q + ++ P   +LSK+  L++  N ++  I S L +L ++I + L  N I+ 
Sbjct: 154 QYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKIS-DI-SPLASLPNLIEVHLKNNQISD 209

Query: 206 SIPDTLGYLENLSFLSLGGNMLS 228
             P  L    NL  ++L    ++
Sbjct: 210 VSP--LANTSNLFIVTLTNQTIT 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 19/215 (8%)

Query: 149 DLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSL-GNLSSIIRLSLTYNNIARS 206
           DLS N L  ++    F S  +++ L      +  +I      +LS +  L LT N I +S
Sbjct: 34  DLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QS 90

Query: 207 IP-DTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFT-L 263
           +       L +L  L      L+ ++ +       ++   +V  N +Q +  L   F+ L
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNL 148

Query: 264 PNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323
            NL+H  +  N    +      +   L             SL L  N +   I PG  K 
Sbjct: 149 TNLEHLDLSSNKIQSI---YCTDLRVL-----HQMPLLNLSLDLSLNPM-NFIQPGAFKE 199

Query: 324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
           + L+ L +  N+L          L +L+ + +  N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 22/215 (10%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
           T+ L L+ N    L      +F   L  L L   +I  +I  G    L +L  L +  N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87

Query: 336 LSGTIPSAI-GDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIP---- 389
           +  ++       L +L+ L       + ++     G+LK L +L V+ N +Q +      
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEY 144

Query: 390 -SSLCQCKSLIGINFSKNNLSGTIPPQLF----GLSSLSISLDLSRNHFTGSLPIEVGNL 444
            S+L   + L   + S N +  +I          +  L++SLDLS N     +       
Sbjct: 145 FSNLTNLEHL---DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 445 KNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479
             L  L +  N L           TSL+K+ +  N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 19/229 (8%)

Query: 309 NNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV 368
               F  IP  +    + + L +  N L      +      L++L +S       I    
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA 71

Query: 369 -GNLKMLIQLEVSENFLQGTIPSSL-CQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSIS 425
             +L  L  L ++ N +Q ++         SL  +   + NL+ ++       L +L   
Sbjct: 72  YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKE- 128

Query: 426 LDLSRNHFTGSLPIEVG---NLKNLGVLDISGNLLSGEIPISLGSCTSLE----KLLMQG 478
           L+++ N    S  +      NL NL  LD+S N +       L     +      L +  
Sbjct: 129 LNVAHNLIQ-SFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYN 527
           N      P + + +R L       N L             L+ + L  N
Sbjct: 187 NPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 86  SISPYI-GNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCS 143
           S+  +  G+L  L+ L++ +N       PE    L  L  L L++N I       +    
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 144 NIILM----DLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLT 199
            + L+    DLS+N  +  I P      ++K+L    N L          L+S+ ++ L 
Sbjct: 174 QMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

Query: 200 YN 201
            N
Sbjct: 233 TN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 48/263 (18%), Positives = 70/263 (26%), Gaps = 91/263 (34%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
              LHL  N         +    RL  L L+   +  ++                     
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV------------------- 72

Query: 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLEN 216
                  G+L  +  L    N L  S+P     L ++  L +++N +       L  L  
Sbjct: 73  ------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 217 LSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNF 276
           L  L L GN L  T+P  +                            P L+         
Sbjct: 126 LQELYLKGNELK-TLPPGLLTP------------------------TPKLEK-------- 152

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
                                       L L NN +   +P G+   L NL  L +  N 
Sbjct: 153 ----------------------------LSLANNNL-TELPAGLLNGLENLDTLLLQENS 183

Query: 336 LSGTIPSAIGDLQNLRMLGMSGN 358
           L  TIP        L    + GN
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSV 152
             + L +L+LD    T       G L  L  L L++N +   +P        + ++D+S 
Sbjct: 53  PYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSF 109

Query: 153 NQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSL-GNLSSIIRLSLTYNNIARSIPD- 209
           N+ L ++P      L ++++L    N L  ++P  L      + +LSL  NN+   +P  
Sbjct: 110 NR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAG 166

Query: 210 TLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITT 243
            L  LENL  L L  N L  TIP   F    +  
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 45/222 (20%), Positives = 76/222 (34%), Gaps = 33/222 (14%)

Query: 216 NLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN 275
           +   ++     L+  +P  +      T   +  N +              L    +    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAE 66

Query: 276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK 335
            T+L        G L           L +L L +N++  S+P     L  L  L V  N+
Sbjct: 67  LTKL-----QVDGTL---------PVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR 111

Query: 336 LSGTIPSAIGD-LQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPS--- 390
           L+ ++P      L  L+ L + GN     +P  +      L +L ++ N L   +P+   
Sbjct: 112 LT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168

Query: 391 -SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRN 431
             L    +L      +N+L  TIP   FG   L     L  N
Sbjct: 169 NGLENLDTL---LLQENSLY-TIPKGFFGSHLLP-FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 89  PYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATM-SRCSNIIL 147
              G L  L  L L +N    ++P     L  L  L ++ N +   +P         +  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQE 128

Query: 148 MDLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSL-GNLSSIIRLSLTYNNIAR 205
           + L  N+L   +PP       K++ L    NNLT  +P+ L   L ++  L L  N++  
Sbjct: 129 LYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-Y 185

Query: 206 SIPDTLGYLENLSFLSLGGN 225
           +IP        L F  L GN
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 20/208 (9%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
             LT +IPS++   +   +L L  N ++         L  L  L L  N L  T+P+ IF
Sbjct: 26  KKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIF 81

Query: 237 NR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECI 295
               ++ T  V  N++Q  +P+     L NL    +  N    L       F  L     
Sbjct: 82  KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL---PPRVFDSL----- 132

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
               T L  L L  N++  S+P G+  KL +L+ L ++NN+L      A   L  L+ L 
Sbjct: 133 ----TKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 355 MSGNRFSGNIPLSVGNLKMLIQLEVSEN 382
           +  N+       +  +L+ L  L++ EN
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 19/193 (9%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAI-GDLQNLRML 353
           SN       L L +NK+  S+P     +L  LR LY+ +NKL  T+P+ I  +L+NL  L
Sbjct: 33  SNIPADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90

Query: 354 GMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPS----SLCQCKSLIGINFSKNNL 408
            ++ N+    +P+ V   L  L +L +  N L+ ++P     SL +   L   +   N L
Sbjct: 91  WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL---SLGYNEL 145

Query: 409 SGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLG 466
             ++P  +F  L+SL   L L  N     +P      L  L  L +  N L      +  
Sbjct: 146 Q-SLPKGVFDKLTSLK-ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 467 SCTSLEKLLMQGN 479
           S   L+ L +Q N
Sbjct: 203 SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
            L+ LR L+L++N     +P  I   L+ L  L + +N +   +P  +  +  N+  + L
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRL 116

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSL-GNLSSIIRLSLTYNNIARSIP 208
             NQ L ++PP  F SL+K+  L    N L  S+P  +   L+S+  L L  N + + +P
Sbjct: 117 DRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL-KRVP 173

Query: 209 D-TLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
           +     L  L  L L  N L   +P   F+ 
Sbjct: 174 EGAFDKLTELKTLKLDNNQLK-RVPEGAFDS 203

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 69/242 (28%)

Query: 97  LRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQL 155
            ++L L +N  +  +P +   RL +LR L LN+N +   +PA +                
Sbjct: 39  TKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKL-QTLPAGI---------------- 80

Query: 156 LGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSL-GNLSSIIRLSLTYNNIARSIPDTL-GY 213
                  F  L  ++ L    N L  ++P  +   L ++  L L  N + +S+P  +   
Sbjct: 81  -------FKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDS 131

Query: 214 LENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVF 273
           L  L++LSLG N L  ++P  +F++                        L +L+      
Sbjct: 132 LTKLTYLSLGYNELQ-SLPKGVFDK------------------------LTSLKE----- 161

Query: 274 NNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVW 332
                 L L +N     +PE   +  T L +L LDNN++   +P G    L  L+ L + 
Sbjct: 162 ------LRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQ 213

Query: 333 NN 334
            N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
            L  L  L LD N    ++PP +   L +L  L+L  N +   +P  +  + +++  + L
Sbjct: 107 QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRL 164

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
             NQ L  +P   F  L+++K L+   N L      +  +L  +  L L  N
Sbjct: 165 YNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 33/211 (15%), Positives = 81/211 (38%), Gaps = 15/211 (7%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
           T+ L L + +   +     SN    ++ +++  +     +       L  +  + + N +
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 336 LSGTIPS-AIGDLQNLRMLGMSGNRFSGNIP--LSVGNLKMLIQLEVSENFLQGTIPSSL 392
               I   A+ +L  L+ LG+         P    V +  +   LE+++N    +IP + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 393 CQ--CKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV--GNLKNLG 448
            Q  C   + +    N  + ++    F  + L  ++ L++N +   +  +   G      
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL-DAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 449 VLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479
           +LD+S   ++    +       L++L+ +  
Sbjct: 209 LLDVSQTSVTA---LPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 8/150 (5%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILM--D 149
           NLS +  + + N      I P+    L  L+ L + N  +    P      S  I    +
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILE 136

Query: 150 LSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
           ++ N  + +IP   F  L          NN   S+     N + +  + L  N     I 
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 209 DTL--GYLENLSFLSLGGNMLSGTIPSSIF 236
                G     S L +    ++  +PS   
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVT-ALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 42/225 (18%), Positives = 68/225 (30%), Gaps = 26/225 (11%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
            ++   IPS   +      L L   ++          L N+S + +  ++    + S  F
Sbjct: 21  KDIQ-RIPSLPPSTQ---TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 237 NR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL--------------LL 281
              S +T   +   R    I  D    LP L+  GI                      L 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136

Query: 282 LNDNNFGGLIPE-CISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTI 340
           + DN +   IP            +L L NN    S+         L  +Y+  NK    I
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 341 PSAI--GDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENF 383
                 G      +L +S    +    L    L+ L +L     +
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTA---LPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 37/246 (15%), Positives = 76/246 (30%), Gaps = 49/246 (19%)

Query: 97  LRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPA-TMSRCSNIILMDLSVNQ 154
            + L L   +    IP      L  +  + ++ +    ++ + +    S +  +++   +
Sbjct: 33  TQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 155 LLGNIPPE-FGSLSKIKDLRSFMNNLTGSIP--SSLGNLSSIIRLSLTYNNIARSIP-DT 210
            L  I P+    L  +K L  F   L    P  + + +      L +T N    SIP + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 211 LGYLENLSF-LSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHF 269
              L N +  L L  N  + ++    FN + +                            
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA-------------------------- 183

Query: 270 GIVFNNFTELLLLNDNNFGGLIPE-CISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLR 327
                     + LN N +  +I +       +  + L +    +  ++P      L  L 
Sbjct: 184 ----------VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELI 232

Query: 328 RLYVWN 333
               W 
Sbjct: 233 ARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 45/220 (20%), Positives = 72/220 (32%), Gaps = 25/220 (11%)

Query: 143 SNIILMDLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTY 200
            +   + L    L   IP   F +L  I  +   ++     + S S  NLS +  + +  
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 201 NNIARSIP-DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVL--NRMQGNIPL 257
                 I  D L  L  L FL +    L    P      S+   F + +  N    +IP+
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 258 DFGFTLPN-LQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSI 316
           +    L N      +  N FT +       F G            L +++L+ NK    I
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSV---QGYAFNGT----------KLDAVYLNKNKYLTVI 195

Query: 317 PPGI--GKLVNLRRLYVWNNKLSGTIPSAI-GDLQNLRML 353
                 G       L V    ++  +PS     L+ L   
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 13/162 (8%)

Query: 374 LIQLEVSENFLQGTIPS-SLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRN 431
              L++ E  L+ TIPS +     ++  I  S +     +    F  LS ++  +++   
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH-IEIRNT 90

Query: 432 HFTGSLPIEV-GNLKNLGVLDISGNLLSGEIP--ISLGSCTSLEKLLMQGNKFYGPIPS- 487
                +  +    L  L  L I    L    P    + S      L +  N +   IP  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 488 SLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL--LENVNLSYN 527
           + + L   ++     NN    +  +   F    L+ V L+ N
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYA--FNGTKLDAVYLNKN 189

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 28/167 (16%), Positives = 47/167 (28%), Gaps = 28/167 (16%)

Query: 389 PSSLCQC--------------------KSLIGINFSKNNLSGTIPPQLF-GLSSLSISLD 427
            S  C+C                     S   +   + +L  TIP   F  L ++S  + 
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISR-IY 61

Query: 428 LSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPIS-LGSCTSLEKLLMQGNKFYG-P 484
           +S +     L      NL  +  ++I        I    L     L+ L +        P
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 485 IPSSLRSLRGLSVWDFAQNNLSGEIPK--FLAGFKLLENVNLSYNDL 529
             + + S     + +   N     IP   F         + L  N  
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 27/212 (12%)

Query: 263 LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGK 322
           L ++       ++   +             + I      +  LFL+ NK+   I P +  
Sbjct: 45  LNSIDQIIANNSDIKSV-------------QGIQYL-PNVTKLFLNGNKL-TDIKP-LAN 88

Query: 323 LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382
           L NL  L++  NK+     S++ DL+ L+ L +  N  S    L   +L  L  L +  N
Sbjct: 89  LKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNN 144

Query: 383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVG 442
            +  T  + L +   L  ++   N +S  I P L GL+ L  +L LS+NH +    +   
Sbjct: 145 KI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKL-QNLYLSKNHISDLRALA-- 197

Query: 443 NLKNLGVLDISGNLLSGEIPISLGSCTSLEKL 474
            LKNL VL++       +      +      +
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 50/255 (19%), Positives = 100/255 (39%), Gaps = 22/255 (8%)

Query: 275 NFTEL--LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW 332
            F E     L   +    +    +    ++  +  +N+ I  S+  GI  L N+ +L++ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLN 76

Query: 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSL 392
            NKL+      + +L+NL  L +  N+      L   +LK L  L +  N +  +  + L
Sbjct: 77  GNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGI--SDINGL 130

Query: 393 CQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI 452
                L  +    N ++  I   L  L+ L   L L  N  +  +P+    L  L  L +
Sbjct: 131 VHLPQLESLYLGNNKIT-DITV-LSRLTKLDT-LSLEDNQISDIVPLA--GLTKLQNLYL 185

Query: 453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF 512
           S N +S ++  +L    +L+ L +   +      +   +L   +       +L    P+ 
Sbjct: 186 SKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEI 241

Query: 513 LAGFKLLENVNLSYN 527
           ++     E  N+ ++
Sbjct: 242 ISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 51/280 (18%), Positives = 92/280 (32%), Gaps = 54/280 (19%)

Query: 185 SSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTF 244
            S    +  I+ +L   ++  ++      L ++  +    + +            S+   
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----------SVQGI 64

Query: 245 SVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLAS 304
                             LPN+    +  N  T++          L           L  
Sbjct: 65  Q----------------YLPNVTKLFLNGNKLTDI-----KPLANL---------KNLGW 94

Query: 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI 364
           LFLD NK+       +  L  L+ L + +N +S  I + +  L  L  L +  N+ +   
Sbjct: 95  LFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDIT 150

Query: 365 PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSI 424
            LS   L  L  L + +N +  +    L     L  +  SKN++S  +   L GL +L +
Sbjct: 151 VLS--RLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDV 204

Query: 425 SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPIS 464
            L+L              NL     +  +   L     IS
Sbjct: 205 -LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 49/259 (18%), Positives = 95/259 (36%), Gaps = 31/259 (11%)

Query: 124 LTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSI 183
                  I           +  I  +L    +   +      L+ I  + +  +++  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV 61

Query: 184 PSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITT 243
              +  L ++ +L L  N +   I   L  L+NL +L L  N +     SS+ +   + +
Sbjct: 62  -QGIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116

Query: 244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLA 303
            S+  N +     L     LP L+   +  N  T++          L         T L 
Sbjct: 117 LSLEHNGISDINGLV---HLPQLESLYLGNNKITDI-----TVLSRL---------TKLD 159

Query: 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN 363
           +L L++N+I  S    +  L  L+ LY+  N +S     A+  L+NL +L +        
Sbjct: 160 TLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 215

Query: 364 IPLSVGNLKMLIQLEVSEN 382
                 NL +   ++ ++ 
Sbjct: 216 PINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 370 NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLS--ISLD 427
                I+  + +  +   +     +  S+  I  + +++       + G+  L     L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----SVQGIQYLPNVTKLF 74

Query: 428 LSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPS 487
           L+ N  T   P+   NLKNLG L +  N +  ++  SL     L+ L ++ N       +
Sbjct: 75  LNGNKLTDIKPLA--NLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS--DIN 128

Query: 488 SLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
            L  L  L       N ++      L+    L+ ++L  N +
Sbjct: 129 GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI 168

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 49/268 (18%), Positives = 85/268 (31%), Gaps = 47/268 (17%)

Query: 97  LRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQL 155
              L          I          L  + ++ N +   I A +                
Sbjct: 32  AIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADV---------------- 74

Query: 156 LGNIPPEFGSLSKIKDLR-SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD-TLGY 213
                  F +L K+ ++R    NNL    P +  NL ++  L ++   I + +PD    +
Sbjct: 75  -------FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIH 126

Query: 214 LENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQ-GNIPLDFGFTLPNLQHFGIV 272
                 L +  N+   TI  + F   S  +  + LN+     I     F    L      
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQLD----- 180

Query: 273 FNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYV 331
                EL L ++NN   L  +      +    L +   +I  S+P      L  LR    
Sbjct: 181 -----ELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRI-HSLPSYGLENLKKLRARST 233

Query: 332 WNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
           +N K    +P+ +  L  L    ++   
Sbjct: 234 YNLK---KLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 42/230 (18%), Positives = 68/230 (29%), Gaps = 23/230 (10%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
           + +T  IPS L    + I L      +            +L  + +  N +   I + +F
Sbjct: 19  SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 237 NR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL-------------LLL 282
           +    +    +        I  +    LPNLQ+  I       L             L +
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 283 NDNNFGGLIPE-CISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW-NNKLSGTI 340
            DN     I        S     L+L+ N I   I         L  L +  NN L    
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 341 PSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
                      +L +S  R      L    L+ L +L     +    +P+
Sbjct: 195 NDVFHGASGPVILDISRTRIH---SLPSYGLENLKKLRARSTYNLKKLPT 241

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 8/150 (5%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPA-TMSRCSNIILMDL 150
           NL  L  + ++  N    I PE    L  L+ L ++N  I   +P          +L+D+
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI 135

Query: 151 SVNQLLGNIPPE-FGSLS-KIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
             N  +  I    F  LS +   L    N +   I +S  N + +  L+L+ NN    +P
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 209 -DTLGYLENLSFLSLGGNMLSGTIPSSIFN 237
            D          L +    +  ++PS    
Sbjct: 195 NDVFHGASGPVILDISRTRIH-SLPSYGLE 223

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 44/232 (18%), Positives = 70/232 (30%), Gaps = 36/232 (15%)

Query: 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN 363
                 +K+   IP  +    N   L     KL      A     +L  + +S N     
Sbjct: 13  VFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 364 IPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSS 421
           I   V  NL  L ++ + +                        NNL   I P+ F  L +
Sbjct: 70  IEADVFSNLPKLHEIRIEKA-----------------------NNLL-YINPEAFQNLPN 105

Query: 422 LSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISL--GSCTSLEKLLMQG 478
           L   L +S       LP     +     +LDI  N+    I  +   G       L +  
Sbjct: 106 LQ-YLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF-LAGFKLLENVNLSYNDL 529
           N       S+    +   +     NNL  E+P     G      +++S   +
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSR--CSNIILMD 149
           NL  L+ L + N    H +P        +   L + +N     I            +++ 
Sbjct: 102 NLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 150 LSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
           L+ N +   I    F      +   S  NNL           S  + L ++   I     
Sbjct: 161 LNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 209 DTLGYLENLSFLSLGGN 225
             L  L+ L   S    
Sbjct: 220 YGLENLKKLRARSTYNL 236

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 7e-11
 Identities = 48/269 (17%), Positives = 83/269 (30%), Gaps = 14/269 (5%)

Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNF 298
                 S V         L+        +      ++  E +LL D           S  
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR---DSAT 347

Query: 299 STTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
              L    L   K    +   +     L+ L   N     TI   I  ++ L  L     
Sbjct: 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKE 403

Query: 359 RFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFG 418
                  L   +      L+   +           +   +  ++ +  +L  T+   L  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQ 461

Query: 419 LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478
           L  ++  LDLS N    +LP  +  L+ L VL  S N L   +   + +   L++LL+  
Sbjct: 462 LLLVT-HLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 517

Query: 479 NKFYG-PIPSSLRSLRGLSVWDFAQNNLS 506
           N+         L S   L + +   N+L 
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 49/347 (14%), Positives = 97/347 (27%), Gaps = 57/347 (16%)

Query: 43  NETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHL 102
            E            +      +L   +E+    +W       G   P    L  L    L
Sbjct: 253 EEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT---PDGRNRPSHVWLCDLPAASL 309

Query: 103 DNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE 162
           ++    H            +   L  +          +    +   +LSV +    +  E
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKST-VLQSE 367

Query: 163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL 222
             S  ++++L           P +   L +II L    + +     +TL Y   L  +  
Sbjct: 368 LESCKELQELE----------PENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDP 416

Query: 223 GGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLL 282
                   + S     +S+                                     +L L
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKM----------------------------EYADVRVLHL 448

Query: 283 NDNNFGGLIPECISNFS--TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTI 340
              +        + +      +  L L +N++  ++PP +  L  L  L   +N L   +
Sbjct: 449 AHKDL-----TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 341 PSAIGDLQNLRMLGMSGNRFSGNIP--LSVGNLKMLIQLEVSENFLQ 385
              + +L  L+ L +  NR          + +   L+ L +  N L 
Sbjct: 502 DG-VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 18/172 (10%)

Query: 48  EALLEFKSKITVDPFGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNF 107
           E L  F +   VDP       ++         S+             + +R LHL + + 
Sbjct: 403 ETLQYFSTLKAVDPMR-AAYLDDLRSKFLLENSVL--------KMEYADVRVLHLAHKDL 453

Query: 108 THAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLS 167
           T      + +L  +  L L++N +   +P  ++    + ++  S N L  N+     +L 
Sbjct: 454 TV--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLP 508

Query: 168 KIKDLRSFMNNLTGSIPS--SLGNLSSIIRLSLTYNNIARSIPDTLGYLENL 217
           ++++L    NN      +   L +   ++ L+L  N++ +        L  +
Sbjct: 509 RLQEL-LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 558

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 25/204 (12%)

Query: 275 NFTEL--LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW 332
                    L   +   L         + + +   DN+ I      G+    NL+ L++ 
Sbjct: 17  GLANAVKQNLGKQSVTDL--VSQKEL-SGVQNFNGDNSNI--QSLAGMQFFTNLKELHLS 71

Query: 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSL 392
           +N++S  + S + DL  L  L ++ NR      +    L    +L +  N L      SL
Sbjct: 72  HNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNEL--RDTDSL 124

Query: 393 CQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI 452
              K+L  ++   N L  +I   L  LS L + LDL  N  T +  +    LK +  +D+
Sbjct: 125 IHLKNLEILSIRNNKLK-SIVM-LGFLSKLEV-LDLHGNEITNTGGLT--RLKKVNWIDL 179

Query: 453 SGNLLSGEIPISLGSCTSLEKLLM 476
           +G                  +L +
Sbjct: 180 TGQ------KCVNEPVKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 20/226 (8%)

Query: 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI 364
                  I   + P    L N  +  +    +  T   +  +L  ++      +      
Sbjct: 2   SIQRPTPI-NQVFP-DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLA 57

Query: 365 PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSI 424
            +       L +L +S N  Q +  S L     L  ++ ++N L       L G+ S  +
Sbjct: 58  GMQ--FFTNLKELHLSHN--QISDLSPLKDLTKLEELSVNRNRLK-----NLNGIPSACL 108

Query: 425 -SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG 483
             L L  N    +  +   +LKNL +L I  N L   I   LG  + LE L + GN+   
Sbjct: 109 SRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITN 164

Query: 484 PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
                L  L+ ++  D        E  K+     +   V       
Sbjct: 165 --TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 50/198 (25%)

Query: 185 SSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTF 244
            S   LS +   +   +NI +S+   + +  NL  L L  N +           S ++  
Sbjct: 35  VSQKELSGVQNFNGDNSNI-QSL-AGMQFFTNLKELHLSHNQI-----------SDLSPL 81

Query: 245 SVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLAS 304
                             L  L+   +  N    L  +                S  L+ 
Sbjct: 82  K----------------DLTKLEELSVNRNRLKNLNGIP---------------SACLSR 110

Query: 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI 364
           LFLDNN++       +  L NL  L + NNKL  +I   +G L  L +L + GN  +   
Sbjct: 111 LFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTG 166

Query: 365 PLSVGNLKMLIQLEVSEN 382
            L+   LK +  ++++  
Sbjct: 167 GLT--RLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 48/238 (20%), Positives = 86/238 (36%), Gaps = 29/238 (12%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
            + P    L+   + +L   + T  +      L  ++    +N++I  +  A M   +N+
Sbjct: 11  QVFP-DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNL 65

Query: 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
             + LS NQ + ++ P    L+K+++L    N L          LS    L L  N +  
Sbjct: 66  KELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSR---LFLDNNEL-- 118

Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN 265
              D+L +L+NL  LS+  N L  +I   +   S +    +  N +     L     L  
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGGLT---RLKK 173

Query: 266 LQHFGIVFN--------NFTELLLLN--DNNFGGLI-PECISNFSTTLASLFLDNNKI 312
           +    +              EL + N   +  G  I P  ISN   +     +     
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISN-GGSYVDGCVLWELP 230

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
           T  L LN+N F  L    I      L  +   NNKI   I  G       +  + + +N+
Sbjct: 34  TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNR 92

Query: 336 LSGTIPSAIGD-LQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIP 389
           L   +   +   L++L+ L +  NR +  +       L  +  L + +N +  T+ 
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 98  RRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
             L L+NN FT      I  +L +LR +  +NN I           S +  + L+ N+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 157 GNIPPE-FGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIPD-TLGY 213
            N+  + F  L  +K L    N +T  + + S   LSS+  LSL  N I  ++       
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDT 151

Query: 214 LENLSFLSLGGN 225
           L +LS L+L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query: 111 IPPEIGRLRRLRGLTLNNNSIGG-EIPATMSRCSNIILMDLSVNQLLGNIPPE-FGSLSK 168
           IP     LR      LNNN     E      +   +  ++ S N++  +I    F   S 
Sbjct: 30  IPQYTAELR------LNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASG 82

Query: 169 IKDLRSFMNNLTGSIPSSL-GNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNML 227
           + ++    N L  ++   +   L S+  L L  N I     D+   L ++  LSL  N +
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 228 SGTIPSSIFNR-SSITT 243
           + T+    F+   S++T
Sbjct: 142 T-TVAPGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 14/145 (9%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
            +     A L L+NN+       GI  KL  LR++   NNK++     A      +  + 
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 355 MSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPS----SLCQCKSLIGINFSKNNLS 409
           ++ NR   N+   +   L+ L  L +  N +   + +     L   + L   +   N ++
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLL---SLYDNQIT 142

Query: 410 GTIPPQLF-GLSSLSISLDLSRNHF 433
            T+ P  F  L SLS +L+L  N F
Sbjct: 143 -TVAPGAFDTLHSLS-TLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
            L  LR+++  NN  T  I          +  + L +N +   +   M     ++  + L
Sbjct: 55  KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL-ENVQHKMFKGLESLKTLML 112

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIP-SSLGNLSSIIRLSLTYNN 202
             N+ +  +  + F  LS ++ L  + N +T ++   +   L S+  L+L   N
Sbjct: 113 RSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNL-LAN 163

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 21/168 (12%)

Query: 195 RLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQG 253
           +L L    +A     T   L  L++L+L  N L  T+ + +F+  + + T  +  N++  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96

Query: 254 NIPLDFGFTLPNLQHFGIVFNNFTEL--LLLNDNNFGGLIPECISNFSTTLASLFLDNNK 311
                   +LP       VF++ T+L  L L  N    L P  + +  T L  L L+ N+
Sbjct: 97  --------SLPLG-----VFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQ 142

Query: 312 IFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
           +  SIP G   KL NL+ L +  N+L      A   L  L+ + + GN
Sbjct: 143 L-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 14/154 (9%)

Query: 98  RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG 157
            +L L +             L +L  L L+ N +           + +  + L+ NQ L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LA 96

Query: 158 NIPPE-FGSLSKIKDLRSFMNNLTGSIPS----SLGNLSSIIRLSLTYNNIARSIPD-TL 211
           ++P   F  L+++  L    N L  S+PS     L  L     L L  N + +SIP    
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK---ELRLNTNQL-QSIPAGAF 151

Query: 212 GYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTF 244
             L NL  LSL  N L  ++P   F+R   + T 
Sbjct: 152 DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 43/183 (23%), Positives = 69/183 (37%), Gaps = 36/183 (19%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLG 354
           S        L L +  +          L  L  L +  N+L  T+ + + D L  L  LG
Sbjct: 31  SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89

Query: 355 MSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP 413
           ++ N+ + ++PL V  +L  L +L +  N L+                         ++P
Sbjct: 90  LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-------------------------SLP 123

Query: 414 PQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSL 471
             +F  L+ L   L L+ N    S+P      L NL  L +S N L     +  G+   L
Sbjct: 124 SGVFDRLTKLKE-LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS---VPHGAFDRL 178

Query: 472 EKL 474
            KL
Sbjct: 179 GKL 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 13/142 (9%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
            L+ L  L L +N+    I  E    +  LR L L++N +   +   + S    + ++ L
Sbjct: 62  RLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLL 119

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIP----SSLGNLSSIIRLSLTYNNIAR 205
             N  +  +    F  +++++ L    N ++   P         L  ++ L L+ N + +
Sbjct: 120 YNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177

Query: 206 SIPDTLGYLENLS--FLSLGGN 225
                L  L       L L  N
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 24/168 (14%)

Query: 230 TIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFT-LPNLQHFGIVFNNFTELLLLNDNNFG 288
            +P S+   S      +  N +   +  ++  T L NL    +  N+   +   +   F 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFI---SSEAFV 85

Query: 289 GLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDL 347
            +           L  L L +N +  ++   +   L  L  L ++NN +     +A  D+
Sbjct: 86  PV---------PNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 348 QNLRMLGMSGNRFSGNIP----LSVGNLKMLIQLEVSENFLQGTIPSS 391
             L+ L +S N+ S   P         L  L+ L++S N L+  +P +
Sbjct: 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 49/206 (23%)

Query: 134 EIPATMSRCSNIILMDLSVNQLLGNIPPE--FGSLSKIKDLRSFMNNLTGSIPS-SLGNL 190
            +P ++   S   L+DLS N L   +  E     L+ +  L    N+L   I S +   +
Sbjct: 32  NVPQSLP--SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 191 SSIIRLSLTYNNIARSIP-DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN 249
            ++  L L+ N++  ++       L+ L  L L  N +   +  + F             
Sbjct: 88  PNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFED----------- 134

Query: 250 RMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFS--TTLASLFL 307
                        +  LQ            L L+ N       E I + +    L  L L
Sbjct: 135 -------------MAQLQK-----------LYLSQNQISRFPVELIKDGNKLPKLMLLDL 170

Query: 308 DNNKIFGSIPPG-IGKLVNLRRLYVW 332
            +NK+   +P   + KL    +  ++
Sbjct: 171 SSNKL-KKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 41/211 (19%), Positives = 64/211 (30%), Gaps = 63/211 (29%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI--GKLVNLRRLYVWNNKLSGTIPS-AIGDLQNLRM 352
            +  +  A L L +N +   +       +L NL  L + +N L+  I S A   + NLR 
Sbjct: 35  QSLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRY 92

Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTI 412
           L                                                + S N+L  T+
Sbjct: 93  L------------------------------------------------DLSSNHLH-TL 103

Query: 413 PPQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGEIP----ISLG 466
              LF  L +L + L L  NH    +      ++  L  L +S N +S   P        
Sbjct: 104 DEFLFSDLQALEV-LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160

Query: 467 SCTSLEKLLMQGNKFYGPIPSSLRSLRGLSV 497
               L  L +  NK      + L+ L     
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 11/136 (8%)

Query: 401 INFSKNNLSGTIPPQLF--GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLL 457
           ++ S NNLS  +  +     L++L  SL LS NH    +  E    + NL  LD+S N L
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLH-SLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100

Query: 458 SGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK--FLAG 515
                       +LE LL+  N       ++   +  L     +QN +S   P      G
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDG 159

Query: 516 FKL--LENVNLSYNDL 529
            KL  L  ++LS N L
Sbjct: 160 NKLPKLMLLDLSSNKL 175

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 98  RRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPA-TMSRCSNIILMDLSVNQL 155
             + L+ N     IPP      ++LR + L+NN I  E+         ++  + L  N+ 
Sbjct: 35  TEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK- 91

Query: 156 LGNIPPE-FGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIPDTLGY 213
           +  +P   F  L  ++ L    N +   +   +  +L ++  LSL  N +      T   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 214 LENLSFLSLGGN 225
           L  +  + L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 35/165 (21%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRML 353
           +N   T+  + L+ N I   IPPG       LRR+ + NN++S  +       L++L  L
Sbjct: 28  TNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL 85

Query: 354 GMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTI 412
            + GN+ +  +P S+   L  L  L ++ N +                           +
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-------------------------CL 119

Query: 413 PPQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNLKNLGVLDISGN 455
               F  L +L+  L L  N    ++       L+ +  + ++ N
Sbjct: 120 RVDAFQDLHNLN-LLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 69/202 (34%)

Query: 158 NIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL 217
           N+P        I ++R   N +    P +      + R+ L+ N I+   PD    L +L
Sbjct: 29  NLPET------ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 218 SFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT 277
           + L L GN ++  +P S+F                          L +LQ          
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEG------------------------LFSLQL--------- 108

Query: 278 ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKL 336
                                      L L+ NKI   +       L NL  L +++NKL
Sbjct: 109 ---------------------------LLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 337 SGTIPSAIGDLQNLRMLGMSGN 358
                     L+ ++ + ++ N
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 272 VFNNFTELLLLN-DNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRL 329
            F+ + +L  ++  NN    +         +L SL L  NKI   +P  +   L +L+ L
Sbjct: 51  AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL 109

Query: 330 YVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382
            +  NK++     A  DL NL +L +  N+       +   L+ +  + +++N
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 31/167 (18%)

Query: 315 SIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML 374
            IP  +     +  + +  N +    P A    + LR + +S N+ S    L+    + L
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE---LAPDAFQGL 79

Query: 375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHF 433
             L                       +    N ++  +P  LF GL SL + L L+ N  
Sbjct: 80  RSLNS---------------------LVLYGNKIT-ELPKSLFEGLFSLQL-LLLNANKI 116

Query: 434 TGSLPIEV-GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479
              L ++   +L NL +L +  N L      +     +++ + +  N
Sbjct: 117 N-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 93  NLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDL 150
               LRR+ L NN  +  + P+    LR L  L L  N I  E+P ++     ++ L+ L
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLL 111

Query: 151 SVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
           + N+ +  +  + F  L  +  L  + N L      +   L +I  + L  N
Sbjct: 112 NANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
           T  LLLNDN  G +  + +      L  L L  N++   I P       +++ L +  NK
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENK 89

Query: 336 LSGTIPSAIGD-LQNLRMLGMSGN 358
           +   I + +   L  L+ L +  N
Sbjct: 90  IK-EISNKMFLGLHQLKTLNLYDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRML 353
            +       L L++N++      G+ G+L +L +L +  N+L+  I     +   +++ L
Sbjct: 25  RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQEL 83

Query: 354 GMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIP 389
            +  N+    I   +   L  L  L + +N +   + 
Sbjct: 84  QLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVM 118

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 50/321 (15%), Positives = 103/321 (32%), Gaps = 54/321 (16%)

Query: 187 LGNLSSIIRLSLTYNNI----ARSIPDTLGYLENLSFLSLGGNMLSGT----IPSSIFNR 238
           +   S I   SL  + I     +S+   L   +++  + L GN +       +  +I ++
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL--LLLNDNNFGGLIPECIS 296
             +       + +      D       L+          +L  + L+DN FG    E + 
Sbjct: 60  KDLE--IAEFSDIFTGRVKDEI--PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 297 NF---STTLASLFLDNNKI-------------FGSIPPGIGKLVNLRRLYVWNNKLSG-- 338
           +F    T L  L+L NN +               ++         LR +    N+L    
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 339 --TIPSAIGDLQNLRMLGMSGNRF-----SGNIPLSVGNLKMLIQLEVSENFLQGT---- 387
                      + L  + M  N          +   +   + L  L++ +N         
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 388 IPSSLCQCKSLIGINFSKNNLSGT----IPPQLFGLSSLSI-SLDLSRNHFT--GSLPIE 440
           +  +L    +L  +  +   LS      +      L ++ + +L L  N         ++
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 441 ---VGNLKNLGVLDISGNLLS 458
                 + +L  L+++GN  S
Sbjct: 296 TVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 51/339 (15%), Positives = 99/339 (29%), Gaps = 87/339 (25%)

Query: 183 IPSSLGNLSSIIRLSLTYNNI----ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
           + + L    S+  + L+ N I    AR + + +   ++L                     
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF------------ 71

Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL--LLLNDNNFGGLIPECIS 296
                      R++  IP         L+          +L  + L+DN FG    E + 
Sbjct: 72  ---------TGRVKDEIP-------EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 297 NF---STTLASLFLDNNKI-------------FGSIPPGIGKLVNLRRLYVWNNKLSG-- 338
           +F    T L  L+L NN +               ++         LR +    N+L    
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 339 --TIPSAIGDLQNLRMLGMSGNRF-----SGNIPLSVGNLKMLIQLEVSENFLQGT---- 387
                      + L  + M  N          +   +   + L  L++ +N         
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNL 447
           +  +L    +L  +  +   LS        G +++  +     N               L
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSAR------GAAAVVDAFSKLEN-------------IGL 276

Query: 448 GVLDISGNLLSGEIPISLGS-----CTSLEKLLMQGNKF 481
             L +  N +  +   +L +        L  L + GN+F
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 48/341 (14%), Positives = 104/341 (30%), Gaps = 73/341 (21%)

Query: 91  IGNLSFLRRLHLDNNNFT----HAIPPEIGRLRRLRGLTLNNNSIGGE----IPATMSRC 142
           +   S +    L  +  T     ++   +     ++ + L+ N+IG E    +   ++  
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
            ++ + + S                    ++  +      +  +L     +  + L+ N 
Sbjct: 60  KDLEIAEFSDIF--------------TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105

Query: 203 I----ARSIPDTLGYLENLSFLSLGGNMLS-------------GTIPSSIFNRSSITTFS 245
                   + D L     L  L L  N L                +     N   + +  
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165

Query: 246 VVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEL--LLLNDNNFG-----GLIPECISNF 298
              NR++     +       ++ +   F +   L  + +  N         L+ E ++  
Sbjct: 166 CGRNRLE-----NGS-----MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY- 214

Query: 299 STTLASLFLDNNKI----FGSIPPGIGKLVNLRRLYVWNNKLSGT----IPSAIGDLQN- 349
              L  L L +N        ++   +    NLR L + +  LS      +  A   L+N 
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 350 -LRMLGMSGNRFS--GNIPLS---VGNLKMLIQLEVSENFL 384
            L+ L +  N         L       +  L+ LE++ N  
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 59/292 (20%)

Query: 295 ISNFSTTLASLFLDNNKI----FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGD---- 346
           ++ FS  +    L  + I      S+   + +  +++ + +  N +       + +    
Sbjct: 1   MARFS--IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS 58

Query: 347 ---LQNLRMLGMSGNRFSGNIPLSVGNL-------KMLIQLEVSENFLQGT----IPSSL 392
              L+      +   R    IP ++  L         L  + +S+N    T    +   L
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 393 CQCKSLIGINFSKNNLS-------------GTIPPQLFGLSSLSISLDLSRNHFTG---- 435
            +   L  +    N L                +  +      L  S+   RN        
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR-SIICGRNRLENGSMK 177

Query: 436 SLPIEVGNLKNLGVLDISGNLLSGE-----IPISLGSCTSLEKLLMQGNKFYGP-----I 485
                  + + L  + +  N +  E     +   L  C  L+ L +Q N F        +
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSAL 236

Query: 486 PSSLRSLRGLSVWDFAQNNLSGEIPKFLA------GFKLLENVNLSYNDLGA 531
             +L+S   L         LS      +           L+ + L YN++  
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 36/183 (19%)

Query: 79  ESLKLAGSISPYIGNLSFLRRLHLDNNNFT----HAIPPEIGRLRRLRGLTLNNNSIGGE 134
           E  +    +   +     L  + L +N F       +   + +   L  L L+NN +G +
Sbjct: 78  EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137

Query: 135 -------------IPATMSRCSNIILMDLSVNQL-------LGNIPPEFGSLSKIKDLRS 174
                        +         +  +    N+L              F S   +  ++ 
Sbjct: 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT---FQSHRLLHTVKM 194

Query: 175 FMNNLT-----GSIPSSLGNLSSIIRLSLTYNNI----ARSIPDTLGYLENLSFLSLGGN 225
             N +        +   L     +  L L  N      + ++   L    NL  L L   
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 226 MLS 228
           +LS
Sbjct: 255 LLS 257

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 61/442 (13%), Positives = 139/442 (31%), Gaps = 93/442 (21%)

Query: 97  LRRLHLDNNNFTHAIPPEIGR-LRRLRGLTLNNNSIGGE----IPATMSRCSNIILMDLS 151
           ++ L +     + A   E+   L++ + + L++  +       I + +     +  ++L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 152 VNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI----ARSI 207
            N+L          + +   L++    +               +LSL    +       +
Sbjct: 65  SNEL---GDVGVHCVLQG--LQTPSCKIQ--------------KLSLQNCCLTGAGCGVL 105

Query: 208 PDTLGYLENLSFLSLGGNMLSGTIPSSIF-----NRSSITTFSVVLNRMQGNIPLDFGFT 262
             TL  L  L  L L  N+L       +       +  +    +    +           
Sbjct: 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 263 L---PNLQHFGIVFNNFTELLLLNDNNFGG----LIPECISNFSTTLASLFLDNNKI--- 312
           L   P+ +            L +++N+       ++ + + +    L +L L++  +   
Sbjct: 166 LRAKPDFKE-----------LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214

Query: 313 -FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGD-----LQNLRMLGMSGNRFS----G 362
               +   +    +LR L + +NKL     + +          LR L +     +    G
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274

Query: 363 NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQ-----CKSLIGINFSKNNLSGTIPPQLF 417
           ++   +   + L +L ++ N L       LC+        L  +     + +        
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------ 328

Query: 418 GLSSLS---------ISLDLSRNHFT--GSLPIEVG---NLKNLGVLDISGNLLSGE--- 460
             S  S         + L +S N     G   +  G       L VL ++   +S     
Sbjct: 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388

Query: 461 -IPISLGSCTSLEKLLMQGNKF 481
            +  +L +  SL +L +  N  
Sbjct: 389 SLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 57/373 (15%), Positives = 120/373 (32%), Gaps = 53/373 (14%)

Query: 84  AGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRL-----RRLRGLTLNNNSIGGE---- 134
              IS  +     L  L+L +N         + +       +++ L+L N  + G     
Sbjct: 45  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 135 IPATMSRCSNIILMDLSVNQLLGNIPPEFGSL-----SKIKDLRSFMNNLT----GSIPS 185
           + +T+     +  + LS N L                 +++ L+    +L+      + S
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 186 SLGNLSSIIRLSLTYNNI----ARSIPDTLGYLE-NLSFLSLGGNMLSGTIPSSIFNRSS 240
            L        L+++ N+I     R +   L      L  L L    ++      +    +
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFS- 299
                  L  +  N   D G     L    +  ++    L + +        +   +   
Sbjct: 225 SKASLRELA-LGSNKLGDVGMAE--LCPGLLHPSSRLRTLWIWECGIT---AKGCGDLCR 278

Query: 300 -----TTLASLFLDNNKIFGSIPPGIGKLV-----NLRRLYVWNNKLSGT----IPSAIG 345
                 +L  L L  N++       + + +      L  L+V +   +        S + 
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338

Query: 346 DLQNLRMLGMSGNRF--SGNIPLSVG---NLKMLIQLEVSENFLQ----GTIPSSLCQCK 396
             + L  L +S NR   +G   L  G      +L  L +++  +      ++ ++L    
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398

Query: 397 SLIGINFSKNNLS 409
           SL  ++ S N L 
Sbjct: 399 SLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 51/341 (14%), Positives = 111/341 (32%), Gaps = 65/341 (19%)

Query: 84  AGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRR-----LRGLTLNNNSIGGE---- 134
            G +S  +  L  L+ LHL +N    A    +          L  L L   S+       
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 135 IPATMSRCSNIILMDLSVNQL-------LGNIPPEFGSLSKIKDLRSFMNNLT----GSI 183
           + + +    +   + +S N +       L     +  S  +++ L+     +T      +
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD--SPCQLEALKLESCGVTSDNCRDL 219

Query: 184 PSSLGNLSSIIRLSLTYNNI----ARSIPDTLGY-LENLSFLSLGGNMLS----GTIPSS 234
              + + +S+  L+L  N +       +   L +    L  L +    ++    G +   
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 235 IFNRSSITTFSVVLNRMQ--GNIPLDFGFTLPN--LQHFGIVFNNFTEL----------- 279
           +  + S+   S+  N +   G   L      P   L+   +   +FT             
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 280 ------LLLNDNNFGG----LIPECISNFSTTLASLFLDNNKI----FGSIPPGIGKLVN 325
                 L +++N         + + +    + L  L+L +  +      S+   +    +
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 326 LRRLYVWNNKLSGTIPSAIGD-LQN----LRMLGMSGNRFS 361
           LR L + NN L       + + ++     L  L +    +S
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 7e-08
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 2/101 (1%)

Query: 153 NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIPDTL 211
                +          + +L          +    L  L  +  L++  + +    PD  
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 212 GYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQ 252
            +   LS L+L  N L  ++        S+    +  N + 
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 309 NNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPS-AIGDLQNLRMLGMSGNRFSGNIPLS 367
                      +    NL  LY+ N +    +    +  L  LR L +  +      P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 368 VGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNL 408
                 L +L +S N L+ ++     Q  SL  +  S N L
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 300 TTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
             L  L+++N +    +    +  L  LR L +  + L    P A      L  L +S N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 359 RFSGNIPLSVGNLKMLIQLEVSENFLQ 385
                   +V  L  L +L +S N L 
Sbjct: 91  ALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPE-IGRLRRLRGLTLNNNSIGGEIPATMSRCSN 144
               ++     L  L+++N      +    +  L  LR LT+  + +    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 145 IILMDLSVNQLLGNIPPEFGSLS 167
           +  ++LS N L          LS
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 387 TIPSSLCQCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEV-GNL 444
                L   ++L  +          +  +   GL  L  +L + ++     +  +     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSGLR-FVAPDAFHFT 79

Query: 445 KNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF 481
             L  L++S N L   +        SL++L++ GN  
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 9e-04
 Identities = 19/136 (13%), Positives = 33/136 (24%), Gaps = 39/136 (28%)

Query: 176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD-TLGYLENLSFLSLGGNMLSGTIPSS 234
             +        L    ++  L +      + +    L  L  L  L++  + L   +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 235 IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPEC 294
            F+                          P L             L L+ N    L  + 
Sbjct: 75  AFHF------------------------TPRLSR-----------LNLSFNALESLSWKT 99

Query: 295 ISNFSTTLASLFLDNN 310
           +   S  L  L L  N
Sbjct: 100 VQGLS--LQELVLSGN 113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 90/588 (15%), Positives = 167/588 (28%), Gaps = 195/588 (33%)

Query: 27  QFVPKSHGARAARVAGNETDREALLEFKS--KITVDPFGVLG---SWNESSHFCKWHESL 81
           Q   K + +R          R+ALLE +    + +   GVLG   +W             
Sbjct: 124 QVFAKYNVSRLQPY---LKLRQALLELRPAKNVLI--DGVLGSGKTW------------- 165

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
            +A  +      LS+  +  +D   F                L L N             
Sbjct: 166 -VALDVC-----LSYKVQCKMDFKIFW---------------LNLKN-----------CN 193

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
               +L  L   +LL  I P + S S              +I   + ++ + +R  L   
Sbjct: 194 SPETVLEML--QKLLYQIDPNWTSRSDHSS----------NIKLRIHSIQAELRRLLKSK 241

Query: 202 NIARS--IPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLD 258
                  +   +   +  +  +L   +L  T    + +  S+ TT  + L+         
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM----- 296

Query: 259 FGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFG-SIP 317
              T   ++           LLL     +    P+ +     T     L    I   SI 
Sbjct: 297 -TLTPDEVK----------SLLL----KYLDCRPQDLPREVLTTNPRRL---SIIAESIR 338

Query: 318 PGIGKLVNLRRLYVWNNKLSGTIPSAIGDL------QNLRMLGMSGNRF--SGNIPLSVG 369
            G+    N +  +V  +KL+  I S++  L      +    L +    F  S +IP  + 
Sbjct: 339 DGLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTIL- 391

Query: 370 NLKML---IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSL-SIS 425
            L ++   +        +            SL+     K     TI        S+ SI 
Sbjct: 392 -LSLIWFDVIKSDVMVVVN------KLHKYSLV----EKQPKESTI--------SIPSIY 432

Query: 426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPI 485
           L+L               L+N                       +L + ++     Y   
Sbjct: 433 LELKV------------KLENE---------------------YALHRSIVD---HY--- 453

Query: 486 PSSLRSLRGLSVWDFAQNNLSGEIPKFLA----------GFKLLENVNLSYNDLGARYVP 535
                  +     D     L       +              L   V L +  L  +   
Sbjct: 454 ----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--- 506

Query: 536 TEGVIKNSSATSVMGNSKLCGGIPKLQF--PRCTKNNSSNQKISRGLK 581
               I++ S T+   +  +   + +L+F  P    N+   +++   + 
Sbjct: 507 ----IRHDS-TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 43/177 (24%), Positives = 61/177 (34%), Gaps = 40/177 (22%)

Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSI 241
           S+P+  G  ++   L L  N I +  P     L NL  L LG N L   +P  +F+    
Sbjct: 33  SVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDS--- 86

Query: 242 TTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTT 301
                                L  L             L L  N    L P  + +    
Sbjct: 87  ---------------------LTQLTV-----------LDLGTNQLTVL-PSAVFDRLVH 113

Query: 302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
           L  LF+  NK    +P GI +L +L  L +  N+L      A   L +L    + GN
Sbjct: 114 LKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 98  RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG 157
           + L+L +N  T   P     L  L+ L L +N +G          + + ++DL  NQL  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 158 NIPPE-FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD-TLGYLE 215
            +P   F  L  +K+L    N LT  +P  +  L+ +  L+L   N  +SIP      L 
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL-DQNQLKSIPHGAFDRLS 159

Query: 216 NLSFLSLGGN 225
           +L+   L GN
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRML 353
           +   T    L+L +N+I   + PG+   L+NL+ LY+ +N+L   +P  + D L  L +L
Sbjct: 36  AGIPTNAQILYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVL 93

Query: 354 GMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTI 412
            +  N+ +  +P +V   L  L +L +  N L   +P  + +   L  +   +N L  +I
Sbjct: 94  DLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SI 150

Query: 413 PPQLF-GLSSLS 423
           P   F  LSSL+
Sbjct: 151 PHGAFDRLSSLT 162

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 118 LRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQL--LGNIPPEFGSLSKIKDLRSF 175
             R R L L    I   I    +       +D S N++  L   P     L ++K L   
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVN 72

Query: 176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLENLSFLSLGGN 225
            N +          L  +  L LT N++      D L  L++L++L +  N
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 13/131 (9%)

Query: 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS--G 362
           + L    I  +        V  R L +   K+   I +    L     +  S N      
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 363 NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS--GTIPPQLFGLS 420
             P     L+ L  L V+ N +             L  +  + N+L   G + P L  L 
Sbjct: 59  GFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLK 113

Query: 421 SLSISLDLSRN 431
           SL+  L + RN
Sbjct: 114 SLT-YLCILRN 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLV 324
           +L+          EL+L N  +  G I    + F   L  L L N  +  S+   + KL 
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGL-ISVS-NLPKLP 71

Query: 325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
            L++L +  N++ G +      L NL  L +SGN+       ++  LK L  L+ 
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKS 124

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 92  GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIG-GEIPATMSRCSNIILMDL 150
             +   RR+HL+  N              +R L L+N     G+I    +   N+  + L
Sbjct: 6   SGMDMKRRIHLELRN---------RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL 56

Query: 151 SVNQL--LGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SI 207
               L  + N+P     L K+K L    N + G +      L ++  L+L+ N +   S 
Sbjct: 57  INVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 208 PDTLGYLENLSFLSLGGN 225
            + L  LE L  L L   
Sbjct: 113 LEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 301 TLASLFLDNNKI-FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
            +  L LDN K   G I     + VNL  L + N  L  ++ S +  L  L+ L +S NR
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENR 82

Query: 360 FSGNIPLSVGNLKMLIQLEVSENFLQ--GTIPSSLCQCKSLIGINFSKN 406
             G + +    L  L  L +S N L+   T+   L + + L  ++    
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 43/179 (24%)

Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSI 241
           S+P+  G  +    L L  N++          L +L+ L LGGN L  ++P+ +FN+   
Sbjct: 21  SVPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNK--- 74

Query: 242 TTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTT 301
                                L +L +  +  N    L            P  + +  T 
Sbjct: 75  ---------------------LTSLTYLNLSTNQLQSL------------PNGVFDKLTQ 101

Query: 302 LASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSGN 358
           L  L L+ N++  S+P G+  KL  L+ L ++ N+L  ++P  + D L +L+ + +  N
Sbjct: 102 LKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRML 353
           +   T    L+L+NN+I   + PG+   LVNL++LY  +NKL+  IP+ + D L  L  L
Sbjct: 29  AGIPTDKQRLWLNNNQI-TKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQL 86

Query: 354 GMSGN 358
            ++ N
Sbjct: 87  DLNDN 91

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRML 353
           +   TT   L+L +N+I   + PG+  +L  L RL + NN+L+  +P+ + D L  L  L
Sbjct: 26  TGIPTTTQVLYLYDNQI-TKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQL 83

Query: 354 GMSGN 358
            ++ N
Sbjct: 84  SLNDN 88

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 44/166 (26%)

Query: 194 IRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG 253
           + L      I + +  TL  L+    L+L  N +             I++ S        
Sbjct: 28  VELHGMIPPIEK-MDATLSTLKACKHLALSTNNI-----------EKISSLS-------- 67

Query: 254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIF 313
                    + NL+   +  N   ++             E +   + TL  L++  N+I 
Sbjct: 68  --------GMENLRILSLGRNLIKKI-------------ENLDAVADTLEELWISYNQI- 105

Query: 314 GSIPPGIGKLVNLRRLYVWNNKLSG-TIPSAIGDLQNLRMLGMSGN 358
            +   GI KLVNLR LY+ NNK++       +  L  L  L ++GN
Sbjct: 106 -ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 13/150 (8%)

Query: 270 GIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRL 329
            +V     ++ L         +   +S        L L  N I   I   +  + NLR L
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNI-EKIS-SLSGMENLRIL 75

Query: 330 YVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV---SENFLQG 386
            +  N +   I +       L  L +S N+ +     S+  ++ L+ L V   S N +  
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIA-----SLSGIEKLVNLRVLYMSNNKITN 129

Query: 387 -TIPSSLCQCKSLIGINFSKNNLSGTIPPQ 415
                 L     L  +  + N L       
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 363 NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSL 422
            +  ++  LK    L +S N ++  I SSL   ++L  ++  +N +      ++  L ++
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-----KIENLDAV 91

Query: 423 SIS---LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPIS-LGSCTSLEKLLMQG 478
           + +   L +S N       IE   L NL VL +S N ++    I  L +   LE LL+ G
Sbjct: 92  ADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 479 NKFY 482
           N  Y
Sbjct: 150 NPLY 153

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLV 324
           +L+      ++  EL+L N  +  G +      F   L  L   N  +  SI   + KL 
Sbjct: 8   HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGL-TSIA-NLPKLN 64

Query: 325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
            L++L + +N++SG +        NL  L +SGN+       ++  LK L  L+ 
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKS 117

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 31/145 (21%)

Query: 290 LIPECISNFSTTLASLFLDNNKI-FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQ 348
           +  E  +   + +  L LDN++   G +     +   L  L   N  L+         + 
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--------SIA 58

Query: 349 NLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNL 408
           NL                    L  L +LE+S+N + G +     +C +L  +N S N +
Sbjct: 59  NLP------------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 409 S--GTIPPQLFGLSSLSISLDLSRN 431
               TI P L  L +L  SLDL   
Sbjct: 101 KDLSTIEP-LKKLENLK-SLDLFNC 123

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 98  RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG 157
             L+LD N FT  +P E+   + L  + L+NN I      + S  + ++ + LS N+ L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LR 91

Query: 158 NIPPE-FGSLSKIKDLRSFMNNLTGSIP-SSLGNLSSIIRLSLTYNN 202
            IPP  F  L  ++ L    N+++  +P  +  +LS++  L++   N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAI-GAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 272 VFNNFTEL--LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRR 328
             +N+  L  + L++N    L  +  SN  T L +L L  N++   IPP     L +LR 
Sbjct: 49  ELSNYKHLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSYNRL-RCIPPRTFDGLKSLRL 106

Query: 329 LYVWNNKLSGTIP-SAIGDLQNLRMLGMSGN 358
           L +  N +S  +P  A  DL  L  L +  N
Sbjct: 107 LSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLG 354
                 +  L+LD N+    +P  +    +L  + + NN++S T+ +     +  L  L 
Sbjct: 27  KGIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLI 84

Query: 355 MSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIP 389
           +S NR    IP      LK L  L +  N +   +P
Sbjct: 85  LSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVP 118

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNK 335
              L L  N    L P  + +  T L  L L  N+I  S+P G+  KL  L  LY+  NK
Sbjct: 30  ATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK 87

Query: 336 LSGTIPSAIGD-LQNLRMLGMSGN 358
           L  ++P+ + D L  L+ L +  N
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALDTN 110

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 17/162 (10%)

Query: 323 LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVG--NLKMLIQLEV- 379
           L  +  L     K +  +        NL+ L +       ++   +   +L  L +L + 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 380 --SENFLQGTIPSSLC------QCKSLIGINFSKNNLSGTIPPQLFGLSSLS--ISLDLS 429
              E++      +         +  +L  +          +         L    ++D+S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 430 RNHFTGS----LPIEVGNLKNLGVLDISGNLLSGEIPISLGS 467
               T      L   V  +K+L  +++  N LS E+   L  
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	581
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.95
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.71

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.6e-72  Score=625.30  Aligned_cols=519  Identities=30%  Similarity=0.487  Sum_probs=386.3

Q ss_pred             cCCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCC--------------CCcccc---cC--------------
Q 035922           40 VAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHES--------------LKLAGS---IS--------------   88 (581)
Q Consensus        40 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c~w~~~--------------~~~~g~---i~--------------   88 (581)
                      +++.++|++||++||+++. ||. .+++|..+++||.|.|.              ..+.|.   +|              
T Consensus         7 ~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             ccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            3346789999999999996 887 89999988899999982              223444   33              


Q ss_pred             ---------ccccCCCCCcEEECCCCCCCCCCch--hccCCCCCCEEEccCCCCCCCCcccC-cCCCCCCEEEccC----
Q 035922           89 ---------PYIGNLSFLRRLHLDNNNFTHAIPP--EIGRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDLSV----  152 (581)
Q Consensus        89 ---------~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~----  152 (581)
                               +.++++++|++|+|++|.+++.+|.  .++++++|++|+|++|.+.+.+|..+ .++++|++|++++    
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  164 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS  164 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence                     4677778888888888888877777  77777777777777776665555443 3333333333333    


Q ss_pred             ---------------------------------------------CcCcccCCcccCCCCCCCEEECCCCcccccCCccC
Q 035922          153 ---------------------------------------------NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSL  187 (581)
Q Consensus       153 ---------------------------------------------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  187 (581)
                                                                   |.+++.+|. ++++++|++|++++|.+++.+|..+
T Consensus       165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l  243 (768)
T 3rgz_A          165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI  243 (768)
T ss_dssp             EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred             CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH
Confidence                                                         333333333 4455555555555555555445445


Q ss_pred             cCCCCCcEEEccCCCCCC----------------------cCCCccCCC-CcccccccCCccCCCCCCccccCCCCccEE
Q 035922          188 GNLSSIIRLSLTYNNIAR----------------------SIPDTLGYL-ENLSFLSLGGNMLSGTIPSSIFNRSSITTF  244 (581)
Q Consensus       188 ~~l~~L~~L~l~~n~l~~----------------------~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  244 (581)
                      +++++|++|++++|.+++                      .+|..+... ++|++|++++|++++.+|..+.++++|++|
T Consensus       244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  323 (768)
T 3rgz_A          244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL  323 (768)
T ss_dssp             TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred             hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence            554444444444444432                      333333332 555555555555555555555566666666


Q ss_pred             EcccccCcccCChhhhcCCCCCceeeccccCcc----------------------------------------eeEeccC
Q 035922          245 SVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT----------------------------------------ELLLLND  284 (581)
Q Consensus       245 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~----------------------------------------~~l~l~~  284 (581)
                      ++++|.+.+.+|......+++|++|++++|.+.                                        +.+++++
T Consensus       324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~  403 (768)
T 3rgz_A          324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN  403 (768)
T ss_dssp             ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred             ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence            666666665555553333555555555555432                                        3344455


Q ss_pred             CcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccC
Q 035922          285 NNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI  364 (581)
Q Consensus       285 n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  364 (581)
                      |.+++.+|..+..+. +|++|++++|.+++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|.+++.+
T Consensus       404 n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  482 (768)
T 3rgz_A          404 NGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI  482 (768)
T ss_dssp             SEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence            555555666666654 7777777777777777777777788888888888887778888888888888888888888888


Q ss_pred             CccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccc---
Q 035922          365 PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV---  441 (581)
Q Consensus       365 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l---  441 (581)
                      |..+..+++|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+..++++ +.|++++|+++|.+|..+   
T Consensus       483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTT
T ss_pred             CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcc
Confidence            8888888889999999999888888888889999999999999988899999999998 899999998887777543   


Q ss_pred             -------------------------------------------------------------------cCCCCCCeeeccC
Q 035922          442 -------------------------------------------------------------------GNLKNLGVLDISG  454 (581)
Q Consensus       442 -------------------------------------------------------------------~~l~~L~~L~Ls~  454 (581)
                                                                                         ..+++|++||+++
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~  641 (768)
T 3rgz_A          562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY  641 (768)
T ss_dssp             TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred             cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence                                                                               2356789999999


Q ss_pred             CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCC
Q 035922          455 NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYV  534 (581)
Q Consensus       455 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~i  534 (581)
                      |+++|.+|..++.+++|+.|+|++|+++|.+|+.++.+++|+.||+++|+++|.+|..+..+++|++||+++|+++|. |
T Consensus       642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~-i  720 (768)
T 3rgz_A          642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP-I  720 (768)
T ss_dssp             SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE-C
T ss_pred             CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             CCccccCCcCcccccCCCCCccCCCCCCCCCCCC
Q 035922          535 PTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTK  568 (581)
Q Consensus       535 p~~~~~~~l~~l~~~gN~~lcg~~~~~~~~~c~~  568 (581)
                      |+.++|.++...+|.|||++||.+    .++|..
T Consensus       721 P~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~  750 (768)
T 3rgz_A          721 PEMGQFETFPPAKFLNNPGLCGYP----LPRCDP  750 (768)
T ss_dssp             CSSSSGGGSCGGGGCSCTEEESTT----SCCCCS
T ss_pred             CCchhhccCCHHHhcCCchhcCCC----CcCCCC
Confidence            999999999999999999999964    247874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.1e-59  Score=521.57  Aligned_cols=480  Identities=30%  Similarity=0.441  Sum_probs=348.4

Q ss_pred             CCccccC---CCCcccccCccccCCCCCcEEECCCCCCCCC--------------------------CchhccCCCCCCE
Q 035922           73 HFCKWHE---SLKLAGSISPYIGNLSFLRRLHLDNNNFTHA--------------------------IPPEIGRLRRLRG  123 (581)
Q Consensus        73 ~~c~w~~---~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~--------------------------~p~~l~~l~~L~~  123 (581)
                      ..-+|..   .+.+.|....    -.+++.|+|+++.+.|.                          +|+.++++++|++
T Consensus        29 ~l~~W~~~~~~C~w~gv~C~----~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~  104 (768)
T 3rgz_A           29 LLPDWSSNKNPCTFDGVTCR----DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS  104 (768)
T ss_dssp             SSTTCCTTSCGGGSTTEEEE----TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCE
T ss_pred             cccCCCCCCCCcCCcceEEC----CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCE
Confidence            3457853   4567776543    24566777776666654                          3357888999999


Q ss_pred             EEccCCCCCCCCcc--cCcCCCCCCEEEccCCcCcccCCccc-CCCCCCCEEECCCCcccccCCcc--------------
Q 035922          124 LTLNNNSIGGEIPA--TMSRCSNIILMDLSVNQLLGNIPPEF-GSLSKIKDLRSFMNNLTGSIPSS--------------  186 (581)
Q Consensus       124 L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~--------------  186 (581)
                      |+|++|.++|.+|.  .++++++|++|++++|.+.+.+|..+ .++++|++|++++|++++..|..              
T Consensus       105 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~  184 (768)
T 3rgz_A          105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA  184 (768)
T ss_dssp             EECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE
T ss_pred             EECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEE
Confidence            99999999988888  89999999999999999987777654 55566666666555554333221              


Q ss_pred             -----------CcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCc---
Q 035922          187 -----------LGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQ---  252 (581)
Q Consensus       187 -----------l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~---  252 (581)
                                 +..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+..+++|++|++++|.+.   
T Consensus       185 Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  263 (768)
T 3rgz_A          185 ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI  263 (768)
T ss_dssp             CCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESC
T ss_pred             CCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCcc
Confidence                       13445555555555555554443 555555555555555555444444444433333333333332   


Q ss_pred             -------------------ccCChhhhcC------------------------CCCCceeeccccCcc------------
Q 035922          253 -------------------GNIPLDFGFT------------------------LPNLQHFGIVFNNFT------------  277 (581)
Q Consensus       253 -------------------~~~~~~~~~~------------------------l~~L~~L~l~~n~~~------------  277 (581)
                                         +.+|..+...                        +++|++|++++|.+.            
T Consensus       264 ~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~  343 (768)
T 3rgz_A          264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR  343 (768)
T ss_dssp             CCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred             CccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence                               2333333222                        444444444444432            


Q ss_pred             --eeEeccCCcCcccCchhhhhcccC--------------------------CcEEEccCCcccccCchhhcCCCCCCEE
Q 035922          278 --ELLLLNDNNFGGLIPECISNFSTT--------------------------LASLFLDNNKIFGSIPPGIGKLVNLRRL  329 (581)
Q Consensus       278 --~~l~l~~n~l~~~~p~~~~~~~~~--------------------------L~~L~L~~n~l~~~~p~~l~~l~~L~~L  329 (581)
                        +.+++++|.+++.+|..+..+.++                          |++|++++|.+++.+|..+..+++|++|
T Consensus       344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  423 (768)
T 3rgz_A          344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL  423 (768)
T ss_dssp             TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred             CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence              456677777776677666554323                          4444444444555566666777777777


Q ss_pred             EeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccc
Q 035922          330 YVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS  409 (581)
Q Consensus       330 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  409 (581)
                      ++++|++++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++.
T Consensus       424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT  503 (768)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence            77777777777777777777888888888877777877888888888888888888888888888888899999999888


Q ss_pred             ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccc------------------------
Q 035922          410 GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL------------------------  465 (581)
Q Consensus       410 ~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l------------------------  465 (581)
                      +.+|.++..++++ ++|++++|+++|.+|..+..+++|++|++++|+++|.+|..+                        
T Consensus       504 ~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (768)
T 3rgz_A          504 GEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG  582 (768)
T ss_dssp             SCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred             CcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence            8888888888888 889999999988899889999999999999998887776543                        


Q ss_pred             ----------------------------------------------cCCCCCcEEECCCCcCcccCcccccCCCCCCEEE
Q 035922          466 ----------------------------------------------GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD  499 (581)
Q Consensus       466 ----------------------------------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  499 (581)
                                                                    +.+++|+.|++++|+++|.+|..++.++.|+.|+
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  662 (768)
T 3rgz_A          583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN  662 (768)
T ss_dssp             CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence                                                          3357789999999999999999999999999999


Q ss_pred             CCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccCCCC
Q 035922          500 FAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGGIPK  560 (581)
Q Consensus       500 ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~~~~  560 (581)
                      +++|.++|.+|..+..+++|++||+++|+++|. +|. .+.++.|+.+++++|+ +.|.+|.
T Consensus       663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~ls~N~-l~g~iP~  722 (768)
T 3rgz_A          663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTMLTEIDLSNNN-LSGPIPE  722 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC-CCGGGGGCCCCSEEECCSSE-EEEECCS
T ss_pred             CcCCccCCCCChHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECcCCc-ccccCCC
Confidence            999999999999999999999999999999999 886 4788999999999997 8888875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.8e-54  Score=474.19  Aligned_cols=455  Identities=20%  Similarity=0.167  Sum_probs=343.8

Q ss_pred             CCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECC
Q 035922           96 FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF  175 (581)
Q Consensus        96 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  175 (581)
                      ++++|++++|.+++..|..|.++++|++|+|++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            57888888888887777788888888888888888887778888888888888888888887778788888888888888


Q ss_pred             CCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCcc--EEEcccccCcc
Q 035922          176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT--TFSVVLNRMQG  253 (581)
Q Consensus       176 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~--~L~l~~n~l~~  253 (581)
                      +|++++..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+  ++++++|.+.+
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            8888866667788888888888888888764434444588888888888888866677777777777  77888887776


Q ss_pred             cCChhhhcCCCCCce----------------------------------------------------eeccccCcc----
Q 035922          254 NIPLDFGFTLPNLQH----------------------------------------------------FGIVFNNFT----  277 (581)
Q Consensus       254 ~~~~~~~~~l~~L~~----------------------------------------------------L~l~~n~~~----  277 (581)
                      ..|..+.  ..+|+.                                                    +++++|.+.    
T Consensus       194 ~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          194 IEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             ECTTTTT--TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             cChhHhh--hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            6554432  233333                                                    444333332    


Q ss_pred             ---------eeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccc-cccCC
Q 035922          278 ---------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPS-AIGDL  347 (581)
Q Consensus       278 ---------~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l  347 (581)
                               +.+++++|.++ .+|+.+..+. +|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             HHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence                     34445555444 3455454443 566666666666555555556666666666666665544433 36666


Q ss_pred             CCCCeEeccCCcccccC--CccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcc-hhcccCCcc
Q 035922          348 QNLRMLGMSGNRFSGNI--PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ-LFGLSSLSI  424 (581)
Q Consensus       348 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~  424 (581)
                      ++|++|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+.. +..++++ +
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~  428 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-K  428 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-C
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-C
Confidence            77777777777766544  556777777888888888777777777888888888888888887665544 6778888 8


Q ss_pred             eeEcCCCcccccCCccccCCCCCCeeeccCCcCccc---cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECC
Q 035922          425 SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE---IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA  501 (581)
Q Consensus       425 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  501 (581)
                      .|++++|.+++..|..+..+++|++|++++|++++.   .+..+..+++|++|++++|++.+..|..|..+++|+.|+++
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  508 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS  508 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence            888888888887888888899999999999998762   23568889999999999999998889999999999999999


Q ss_pred             CCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922          502 QNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       502 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      +|++++.+|+.+..++.| +|++++|++++. .|. ...+++++.+++.|||+.|..
T Consensus       509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          509 HNRLTSSSIEALSHLKGI-YLNLASNHISII-LPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             SSCCCGGGGGGGTTCCSC-EEECCSSCCCCC-CGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             CCccCcCChhHhCccccc-EEECcCCccccc-CHhhcccCCCCCEEeCCCCCccccC
Confidence            999999999999999999 999999999986 665 367889999999999999854

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.5e-55  Score=479.44  Aligned_cols=479  Identities=19%  Similarity=0.232  Sum_probs=373.7

Q ss_pred             CCHhHHHHHHHHHhcCCCCCCCC-------CCCCCCCCCCccc---cCCCCcccccCccccCCCCCcEEECCCCCCCCCC
Q 035922           42 GNETDREALLEFKSKITVDPFGV-------LGSWNESSHFCKW---HESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAI  111 (581)
Q Consensus        42 ~~~~~~~~ll~~k~~~~~~~~~~-------l~~w~~~~~~c~w---~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~  111 (581)
                      ....|+.||.++++++..+.+..       ..+|+.+.++|.|   .|..+-         .-.+++.|+|+++.+.|.+
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~---------~~~~V~~L~L~~~~l~g~l   97 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN---------SNGRVTGLSLEGFGASGRV   97 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEEC---------TTCCEEEEECTTSCCEEEE
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEc---------CCCCEEEEEecCcccCCcC
Confidence            33569999999999986555543       3489988899999   653221         0157899999999999999


Q ss_pred             chhccCCCCCCEEEccCCCC------CC------CCcccCcCCCCCCEEEccCCcCcccCCcccCC--------------
Q 035922          112 PPEIGRLRRLRGLTLNNNSI------GG------EIPATMSRCSNIILMDLSVNQLLGNIPPEFGS--------------  165 (581)
Q Consensus       112 p~~l~~l~~L~~L~Ls~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--------------  165 (581)
                      |++++++++|++|+|++|.+      .+      .+|...  +.+|+ +++++|.+.+.+|..+..              
T Consensus        98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A           98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred             ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence            99999999999999999976      22      233322  44556 677777666666655441              


Q ss_pred             -----CCCCCEEECC--CCcccccCCccCcCCCCCcEEEccCCCCCCc-----------------CCCccC--CCCcccc
Q 035922          166 -----LSKIKDLRSF--MNNLTGSIPSSLGNLSSIIRLSLTYNNIARS-----------------IPDTLG--YLENLSF  219 (581)
Q Consensus       166 -----l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~  219 (581)
                           ...++.+.+.  .|++++ +|..++++++|++|++++|.+++.                 +|+.++  ++++|++
T Consensus       175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~  253 (636)
T 4eco_A          175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD  253 (636)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred             cccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCE
Confidence                 1223333332  467777 888888888888888888888875                 788888  8888888


Q ss_pred             cccCCccCCCCCCccccCCCCccEEEccccc-Ccc-cCChhhhc-----CCCCCceeeccccCcceeEeccCCcCcccCc
Q 035922          220 LSLGGNMLSGTIPSSIFNRSSITTFSVVLNR-MQG-NIPLDFGF-----TLPNLQHFGIVFNNFTELLLLNDNNFGGLIP  292 (581)
Q Consensus       220 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~-----~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p  292 (581)
                      |++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..     .+++|+.|++++|.           ++ .+|
T Consensus       254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-----------l~-~ip  321 (636)
T 4eco_A          254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-----------LK-TFP  321 (636)
T ss_dssp             EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-----------CS-SCC
T ss_pred             EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-----------CC-ccC
Confidence            8888888888888888888888888888887 887 77777654     12777766655544           44 567


Q ss_pred             h--hhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCC-CCeEeccCCcccccCCccCC
Q 035922          293 E--CISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQN-LRMLGMSGNRFSGNIPLSVG  369 (581)
Q Consensus       293 ~--~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~  369 (581)
                      .  .+..+. +|++|++++|.++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+.
T Consensus       322 ~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~  397 (636)
T 4eco_A          322 VETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD  397 (636)
T ss_dssp             CHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred             chhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence            7  677775 89999999999988888 7888889999999999888 77888888888 999999999988 7787776


Q ss_pred             CCC--CCcEEeecCcccCCCCccccc-------CCCCCcEEECCCCcccccCCcchhc-ccCCcceeEcCCCcccccCCc
Q 035922          370 NLK--MLIQLEVSENFLQGTIPSSLC-------QCKSLIGINFSKNNLSGTIPPQLFG-LSSLSISLDLSRNHFTGSLPI  439 (581)
Q Consensus       370 ~l~--~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~~L~Ls~n~l~~~~p~  439 (581)
                      ...  +|++|++++|.+++.+|..+.       .+++|++|++++|++. .+|..++. ++.+ +.|++++|+++ .+|.
T Consensus       398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L-~~L~Ls~N~l~-~i~~  474 (636)
T 4eco_A          398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL-SSINLMGNMLT-EIPK  474 (636)
T ss_dssp             TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC-SEEECCSSCCS-BCCS
T ss_pred             hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC-CEEECCCCCCC-CcCH
Confidence            654  899999999999888888887       7788999999999988 67766554 7888 88999999988 5665


Q ss_pred             cccC--------CCCCCeeeccCCcCccccCcccc--CCCCCcEEECCCCcCcccCcccccCCCCCCEEEC------CCC
Q 035922          440 EVGN--------LKNLGVLDISGNLLSGEIPISLG--SCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDF------AQN  503 (581)
Q Consensus       440 ~l~~--------l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l------s~n  503 (581)
                      .+..        +++|++|++++|+++ .+|..+.  .+++|+.|+|++|++.+ +|..+..+++|+.|++      ++|
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N  552 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN  552 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred             HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence            4332        238999999999998 7888776  88999999999999986 8888888999999999      457


Q ss_pred             ccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922          504 NLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       504 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      ++.+.+|..+..+++|++|++++|++ +. +|.. .+++|+.+++++||..|-.
T Consensus       553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~-ip~~-~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          553 RTLREWPEGITLCPSLTQLQIGSNDI-RK-VNEK-ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSCC-CB-CCSC-CCTTCCEEECCSCTTCEEE
T ss_pred             cccccChHHHhcCCCCCEEECCCCcC-Cc-cCHh-HhCcCCEEECcCCCCcccc
Confidence            78888898899999999999999999 55 7764 4478999999999888743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-52  Score=464.47  Aligned_cols=472  Identities=22%  Similarity=0.224  Sum_probs=320.3

Q ss_pred             cccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcc
Q 035922           83 LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE  162 (581)
Q Consensus        83 ~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  162 (581)
                      +.+..+..++++++|++|++++|.+++..|..|+++++|++|++++|.+++..+.+|+++++|++|++++|.+++..|..
T Consensus        37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~  116 (680)
T 1ziw_A           37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP  116 (680)
T ss_dssp             CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCT
T ss_pred             CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhH
Confidence            33434445777777777777777777777777777777777777777777554456777777777777777777666667


Q ss_pred             cCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccC--CCCcccccccCCccCCCCCCccccCC--
Q 035922          163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLG--YLENLSFLSLGGNMLSGTIPSSIFNR--  238 (581)
Q Consensus       163 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~l~~n~l~~~~p~~l~~l--  238 (581)
                      |+++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+  
T Consensus       117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  196 (680)
T 1ziw_A          117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR  196 (680)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSE
T ss_pred             ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhh
Confidence            77777777777777777777677777777777777777777665554433  34667777777776665555443322  


Q ss_pred             -------------------------CCccEEEcccccCcccCChhhhcCC--CCCceeeccccCcc-------------e
Q 035922          239 -------------------------SSITTFSVVLNRMQGNIPLDFGFTL--PNLQHFGIVFNNFT-------------E  278 (581)
Q Consensus       239 -------------------------~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~~~-------------~  278 (581)
                                               ++|+.|++++|.+.+..+..+.. +  ++|+.|++++|.+.             +
T Consensus       197 L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  275 (680)
T 1ziw_A          197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE  275 (680)
T ss_dssp             ECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCccccc
Confidence                                     22333444444444333333222 2  22444444444332             3


Q ss_pred             eEeccCCcCcccCchhh---------------------------------hhcccCCcEEEccCCcccccCchhhcCCCC
Q 035922          279 LLLLNDNNFGGLIPECI---------------------------------SNFSTTLASLFLDNNKIFGSIPPGIGKLVN  325 (581)
Q Consensus       279 ~l~l~~n~l~~~~p~~~---------------------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~  325 (581)
                      .+++++|.+.+..|..+                                 ..+ ++|++|++++|.+.+..+..+..+++
T Consensus       276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~  354 (680)
T 1ziw_A          276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLIN  354 (680)
T ss_dssp             EEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTT
T ss_pred             EeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHhccccC
Confidence            34444444444333322                                 222 25666666666666655555555555


Q ss_pred             CCEEEeecC----------------------------cCcccccccccCCCCCCeEeccCCcccccCC-ccCCCCCCCcE
Q 035922          326 LRRLYVWNN----------------------------KLSGTIPSAIGDLQNLRMLGMSGNRFSGNIP-LSVGNLKMLIQ  376 (581)
Q Consensus       326 L~~L~L~~n----------------------------~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~  376 (581)
                      |++|++++|                            ++++..|.++..+++|++|++++|.+++.++ ..+.++++|++
T Consensus       355 L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~  434 (680)
T 1ziw_A          355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE  434 (680)
T ss_dssp             CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCE
T ss_pred             CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccE
Confidence            555555443                            3444445555566666666666666655444 45556666666


Q ss_pred             EeecCcccCCCCcccccCCCCCcEEECCCCccc--ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccC
Q 035922          377 LEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS--GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISG  454 (581)
Q Consensus       377 L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  454 (581)
                      |++++|++.+..+..+..+++|++|++++|.+.  +.+|..+..++++ +.|++++|++++..+..+..+++|++|++++
T Consensus       435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~  513 (680)
T 1ziw_A          435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEKLEILDLQH  513 (680)
T ss_dssp             EECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhccccccCEEeCCC
Confidence            666666666555666666667777777776664  4677888888888 8999999999977777788999999999999


Q ss_pred             CcCccccC--------ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcC
Q 035922          455 NLLSGEIP--------ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSY  526 (581)
Q Consensus       455 n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~  526 (581)
                      |++++..+        ..+..+++|+.|++++|++....+..|..+++|+.|++++|++++..+..|..+++|++|++++
T Consensus       514 N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~  593 (680)
T 1ziw_A          514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK  593 (680)
T ss_dssp             SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence            99885322        2378899999999999999855555789999999999999999987777889999999999999


Q ss_pred             CCCCCCCCCC-cc-ccCCcCcccccCCCCCccCC
Q 035922          527 NDLGARYVPT-EG-VIKNSSATSVMGNSKLCGGI  558 (581)
Q Consensus       527 N~l~~~~ip~-~~-~~~~l~~l~~~gN~~lcg~~  558 (581)
                      |++++. .|. .+ .+++++.+++.|||+.|++.
T Consensus       594 N~l~~~-~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          594 NLITSV-EKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             SCCCBC-CHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CcCCcc-ChhHhcccccccCEEEccCCCcccCCc
Confidence            999986 443 23 68899999999999999763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1e-52  Score=460.17  Aligned_cols=462  Identities=19%  Similarity=0.190  Sum_probs=319.8

Q ss_pred             cccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccC
Q 035922           85 GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFG  164 (581)
Q Consensus        85 g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  164 (581)
                      +..+..++++++|++|++++|.+++..|..|.++++|++|+|++|.+++..|.+|+++++|++|++++|.+++..+..++
T Consensus        46 ~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  125 (606)
T 3vq2_A           46 ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG  125 (606)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred             EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC
Confidence            33344555666666666666666655555566666666666666666655556666666666666666666555545566


Q ss_pred             CCCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccc----ccccCCccCCCCCCccccCCC
Q 035922          165 SLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLS----FLSLGGNMLSGTIPSSIFNRS  239 (581)
Q Consensus       165 ~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~l~~n~l~~~~p~~l~~l~  239 (581)
                      ++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+    +|++++|.++ .++...+...
T Consensus       126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~  204 (606)
T 3vq2_A          126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI  204 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC
T ss_pred             CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc
Confidence            66666666666666554 3455566666666666666666555555555554443    4666666665 3333333334


Q ss_pred             CccEEEcccccCcccCChhhhcCCCCCceeeccccCcc---------------------eeEec-cCCcCcccCch----
Q 035922          240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT---------------------ELLLL-NDNNFGGLIPE----  293 (581)
Q Consensus       240 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~---------------------~~l~l-~~n~l~~~~p~----  293 (581)
                      +|+.+++++|.+.+.........++.++.+++..+.+.                     +.+++ ..+.+.+.+|.    
T Consensus       205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l  284 (606)
T 3vq2_A          205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL  284 (606)
T ss_dssp             EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred             eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence            66666666665553332222233444444443221111                     11112 33344444433    


Q ss_pred             -----------------hhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEecc
Q 035922          294 -----------------CISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS  356 (581)
Q Consensus       294 -----------------~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  356 (581)
                                       .+..+. +|++|++++|.+ +.+|. + .+++|++|++++|+..+..  .+..+++|++|+++
T Consensus       285 ~~L~~L~l~~~~~~~l~~l~~~~-~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls  358 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLS  358 (606)
T ss_dssp             TTCSEEEEESCCCCCCCCCCTTC-CCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECC
T ss_pred             CCCCEEEecCccchhhhhccccc-cCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECc
Confidence                             233332 556666666665 35553 3 5666666666666444333  45677888888888


Q ss_pred             CCccccc--CCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeEcCCCcc
Q 035922          357 GNRFSGN--IPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLDLSRNHF  433 (581)
Q Consensus       357 ~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l  433 (581)
                      +|.+++.  ++..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..++++ +.|++++|.+
T Consensus       359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l  436 (606)
T 3vq2_A          359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNT  436 (606)
T ss_dssp             SSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCC
T ss_pred             CCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCC
Confidence            8888765  36777888899999999998875 56788899999999999999997777 678889999 8999999999


Q ss_pred             cccCCccccCCCCCCeeeccCCcCcc-ccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchh
Q 035922          434 TGSLPIEVGNLKNLGVLDISGNLLSG-EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF  512 (581)
Q Consensus       434 ~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~  512 (581)
                      ++..|..+.++++|++|++++|++++ .+|..++.+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..
T Consensus       437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  516 (606)
T 3vq2_A          437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH  516 (606)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred             CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence            99899999999999999999999997 47889999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCEEECcCCCCCCCCCCC-ccccC-CcCcccccCCCCCccC
Q 035922          513 LAGFKLLENVNLSYNDLGARYVPT-EGVIK-NSSATSVMGNSKLCGG  557 (581)
Q Consensus       513 l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~-~l~~l~~~gN~~lcg~  557 (581)
                      +..+++|++|++++|+++.  +|. ...+. +++.+++.|||+.|+.
T Consensus       517 ~~~l~~L~~L~l~~N~l~~--~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          517 YNQLYSLSTLDCSFNRIET--SKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             TTTCTTCCEEECTTSCCCC--EESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             ccCCCcCCEEECCCCcCcc--cCHhHhhhcccCcEEEccCCCcccCC
Confidence            9999999999999999985  665 45554 6999999999999965

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5e-52  Score=454.75  Aligned_cols=451  Identities=19%  Similarity=0.161  Sum_probs=401.2

Q ss_pred             CCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCC
Q 035922           81 LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIP  160 (581)
Q Consensus        81 ~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  160 (581)
                      ..+.+..|..++++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+
T Consensus        43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~  122 (606)
T 3t6q_A           43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF  122 (606)
T ss_dssp             CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG
T ss_pred             CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc
Confidence            34555567789999999999999999999889999999999999999999998889999999999999999999998778


Q ss_pred             cccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccc--ccccCCccCCCCCCccccCC
Q 035922          161 PEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLS--FLSLGGNMLSGTIPSSIFNR  238 (581)
Q Consensus       161 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~--~L~l~~n~l~~~~p~~l~~l  238 (581)
                      ..++++++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|+  +|++++|.+++..|..+...
T Consensus       123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~  202 (606)
T 3t6q_A          123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA  202 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred             chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence            8899999999999999999974444555699999999999999988888899999999  89999999986655543221


Q ss_pred             ---------------------------------------------------CCccEEEcccccCcccCChhhhcCCCCCc
Q 035922          239 ---------------------------------------------------SSITTFSVVLNRMQGNIPLDFGFTLPNLQ  267 (581)
Q Consensus       239 ---------------------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  267 (581)
                                                                         .+++.+++++|.+.+..+..+. .+++|+
T Consensus       203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~  281 (606)
T 3t6q_A          203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQ  281 (606)
T ss_dssp             EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT-TCTTCS
T ss_pred             cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc-cccCCC
Confidence                                                               1577788888888765554444 489999


Q ss_pred             eeeccccCcc------------eeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCch-hhcCCCCCCEEEeecC
Q 035922          268 HFGIVFNNFT------------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP-GIGKLVNLRRLYVWNN  334 (581)
Q Consensus       268 ~L~l~~n~~~------------~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n  334 (581)
                      +|++++|.++            +.+++++|.+.+..|..+..++ +|++|++++|.+.+.+|. .+..+++|++|++++|
T Consensus       282 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             EEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             EEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            9999999876            6799999999998888888886 999999999999877665 4899999999999999


Q ss_pred             cCcccc--cccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccc-ccCCCCCcEEECCCCccccc
Q 035922          335 KLSGTI--PSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS-LCQCKSLIGINFSKNNLSGT  411 (581)
Q Consensus       335 ~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~~~  411 (581)
                      ++++..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|.. +..+++|++|++++|.+.+.
T Consensus       361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  440 (606)
T 3t6q_A          361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS  440 (606)
T ss_dssp             CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred             ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence            998765  778999999999999999999888999999999999999999999876654 88999999999999999988


Q ss_pred             CCcchhcccCCcceeEcCCCccccc---CCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCccc
Q 035922          412 IPPQLFGLSSLSISLDLSRNHFTGS---LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSS  488 (581)
Q Consensus       412 ~p~~~~~l~~L~~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  488 (581)
                      .|..+..++++ +.|++++|++++.   .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|+.
T Consensus       441 ~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  519 (606)
T 3t6q_A          441 SEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA  519 (606)
T ss_dssp             CTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred             CHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence            89999999999 8999999999863   3356889999999999999999888999999999999999999999999999


Q ss_pred             ccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922          489 LRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT  536 (581)
Q Consensus       489 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~  536 (581)
                      +..++.| .|++++|.+++.+|..+..+++|++|++++|++.+. .+.
T Consensus       520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~-c~~  565 (606)
T 3t6q_A          520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT-CSN  565 (606)
T ss_dssp             GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS-GGG
T ss_pred             hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc-CCc
Confidence            9999999 999999999999999999999999999999999986 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.6e-50  Score=445.98  Aligned_cols=461  Identities=18%  Similarity=0.196  Sum_probs=311.9

Q ss_pred             ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922           86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS  165 (581)
Q Consensus        86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  165 (581)
                      .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+++++++|++|++++|.+++..+..|++
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence            3555443  68999999999999888888999999999999999999999999999999999999999999766667999


Q ss_pred             CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCcccc--CCCCccE
Q 035922          166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF--NRSSITT  243 (581)
Q Consensus       166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~  243 (581)
                      +++|++|++++|++++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.  .+++|++
T Consensus        96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  175 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK  175 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred             CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence            99999999999999977778899999999999999999999899999999999999999999976666543  5689999


Q ss_pred             EEcccccCcccCChhhhcCCCCCceeeccccCcc----------------eeEeccCCcCcccCchhhhhcc-cCCcEEE
Q 035922          244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT----------------ELLLLNDNNFGGLIPECISNFS-TTLASLF  306 (581)
Q Consensus       244 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~----------------~~l~l~~n~l~~~~p~~~~~~~-~~L~~L~  306 (581)
                      |++++|.+.+..+..+.. +++|+.+++..+.+.                +.+++++|.+.+..|..+..+. ++|++|+
T Consensus       176 L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          176 LELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD  254 (680)
T ss_dssp             EECTTCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred             EECCCCcccccChhhhhh-hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence            999999999877766654 777777777665442                5677777777777777666654 2477777


Q ss_pred             ccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEec-------------------------------
Q 035922          307 LDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM-------------------------------  355 (581)
Q Consensus       307 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-------------------------------  355 (581)
                      +++|.+++..|..++.+++|++|++++|++++..|..+..+++|++|++                               
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L  334 (680)
T 1ziw_A          255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL  334 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred             CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence            7777777666667777777777777777776665555555555555554                               


Q ss_pred             --cCCcccccCCccCCCCCCCcEEeecCcc----------------------------cCCCCcccccCCCCCcEEECCC
Q 035922          356 --SGNRFSGNIPLSVGNLKMLIQLEVSENF----------------------------LQGTIPSSLCQCKSLIGINFSK  405 (581)
Q Consensus       356 --s~n~l~~~~~~~~~~l~~L~~L~L~~n~----------------------------l~~~~p~~l~~l~~L~~L~ls~  405 (581)
                        ++|.+++..+..|.++++|++|++++|.                            +++..|..+..+++|++|++++
T Consensus       335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  414 (680)
T 1ziw_A          335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL  414 (680)
T ss_dssp             ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence              4555544444444444444444443332                            2222223333333334444444


Q ss_pred             CcccccCC-cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc--cccCccccCCCCCcEEECCCCcCc
Q 035922          406 NNLSGTIP-PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS--GEIPISLGSCTSLEKLLMQGNKFY  482 (581)
Q Consensus       406 n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~  482 (581)
                      |++.+.+| ..+..++.+ +.|++++|++++..+..+..+++|++|++++|.+.  +.+|..+..+++|+.|++++|+++
T Consensus       415 N~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~  493 (680)
T 1ziw_A          415 NEIGQELTGQEWRGLENI-FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA  493 (680)
T ss_dssp             SCCEEECCSGGGTTCTTC-CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred             CcCccccCcccccCcccc-cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence            43333332 233333333 33444444443333333444444444444444443  344555556666666666666666


Q ss_pred             ccCcccccCCCCCCEEECCCCccccccc--------hhhhcCCCCCEEECcCCCCCCCCCCC--ccccCCcCcccccCCC
Q 035922          483 GPIPSSLRSLRGLSVWDFAQNNLSGEIP--------KFLAGFKLLENVNLSYNDLGARYVPT--EGVIKNSSATSVMGNS  552 (581)
Q Consensus       483 ~~~p~~l~~l~~L~~L~ls~n~l~~~~p--------~~l~~l~~L~~L~ls~N~l~~~~ip~--~~~~~~l~~l~~~gN~  552 (581)
                      +..+..|..+++|+.|++++|.+++..+        ..+.++++|++|++++|+++.  +|.  ...+++|+.+++++|.
T Consensus       494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC--CCHHHcccccCcceeECCCCC
Confidence            5555556666666666666666654321        125556666666666666653  443  3455666666666664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.7e-51  Score=446.36  Aligned_cols=455  Identities=19%  Similarity=0.160  Sum_probs=387.6

Q ss_pred             ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922           86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS  165 (581)
Q Consensus        86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  165 (581)
                      .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..|++
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence            3454443  78999999999999888889999999999999999999888999999999999999999999888999999


Q ss_pred             CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCC-cCCCccCCCCcccccccCCccCCCCCCccccCCCCcc--
Q 035922          166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT--  242 (581)
Q Consensus       166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~--  242 (581)
                      +++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..|..+..+.+|+  
T Consensus       103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~  182 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV  182 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred             cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence            9999999999999997777889999999999999999986 5799999999999999999999987787777766654  


Q ss_pred             --EEEcccccCcccCChhhhcCCCCCceeeccccCcc--------------eeEeccCCcCcc---------cCchhh--
Q 035922          243 --TFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT--------------ELLLLNDNNFGG---------LIPECI--  295 (581)
Q Consensus       243 --~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~--------------~~l~l~~n~l~~---------~~p~~~--  295 (581)
                        ++++++|.+.+..+..+ . ..+|+.|++++|.+.              +.+.+..+.+.+         ..+..+  
T Consensus       183 l~~L~l~~n~l~~~~~~~~-~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~  260 (606)
T 3vq2_A          183 NLSLDMSLNPIDFIQDQAF-Q-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD  260 (606)
T ss_dssp             CCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred             cceeeccCCCcceeCcccc-c-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence              89999999986544443 3 348999999998764              233332222211         111111  


Q ss_pred             ------------------hh--cccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEec
Q 035922          296 ------------------SN--FSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM  355 (581)
Q Consensus       296 ------------------~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  355 (581)
                                        ..  ..++|+.|++++|.+. .+| .+..+++|++|++++|++ +.+| .+ .+++|++|++
T Consensus       261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l  335 (606)
T 3vq2_A          261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL  335 (606)
T ss_dssp             SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred             ccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence                              11  0147888888888886 455 688888999999999999 5777 45 8899999999


Q ss_pred             cCCcccccCCccCCCCCCCcEEeecCcccCCC--CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcc
Q 035922          356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT--IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF  433 (581)
Q Consensus       356 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l  433 (581)
                      ++|...+..  .+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+. .+|..+..++++ +.|++++|++
T Consensus       336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~l~~n~l  411 (606)
T 3vq2_A          336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL-QHLDFQHSTL  411 (606)
T ss_dssp             ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTC-CEEECTTSEE
T ss_pred             cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCC-CeeECCCCcc
Confidence            999665444  567899999999999998866  4788899999999999999998 577889999999 8999999999


Q ss_pred             cccCC-ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc-cCcccccCCCCCCEEECCCCccccccch
Q 035922          434 TGSLP-IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG-PIPSSLRSLRGLSVWDFAQNNLSGEIPK  511 (581)
Q Consensus       434 ~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~ls~n~l~~~~p~  511 (581)
                      .+..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++.+ .+|..++.+++|+.|++++|.+++.+|.
T Consensus       412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence            98777 688999999999999999999999999999999999999999998 4788999999999999999999999999


Q ss_pred             hhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCC
Q 035922          512 FLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKL  554 (581)
Q Consensus       512 ~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~l  554 (581)
                      .+..+++|++|++++|++++. +|. .+.+++|+.+++++|..-
T Consensus       492 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTSCCC
T ss_pred             hhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCCcCc
Confidence            999999999999999999987 665 467889999999999843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-52  Score=465.73  Aligned_cols=480  Identities=19%  Similarity=0.191  Sum_probs=367.7

Q ss_pred             cCCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCC-----CC--ccccCCC------CcccccCccccCCCCCcEEECCCCC
Q 035922           40 VAGNETDREALLEFKSKITVDPFGVLGSWNESS-----HF--CKWHESL------KLAGSISPYIGNLSFLRRLHLDNNN  106 (581)
Q Consensus        40 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~-----~~--c~w~~~~------~~~g~i~~~~~~l~~L~~L~Ls~n~  106 (581)
                      +++..+|++||++||+++. +|     +|+...     ++  |.|.-..      ...|.....   -.+++.|+|+++.
T Consensus       264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~---~~~V~~L~Ls~~~  334 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN---NGRVTGLSLAGFG  334 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT---TSCEEEEECTTTC
T ss_pred             cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC---CCCEEEEECccCC
Confidence            3345679999999999994 55     776543     55  9992211      012222111   2578999999999


Q ss_pred             CCCCCchhccCCCCCCEEEc-cCCCCCCCCcccC----------------------------------------------
Q 035922          107 FTHAIPPEIGRLRRLRGLTL-NNNSIGGEIPATM----------------------------------------------  139 (581)
Q Consensus       107 l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~l----------------------------------------------  139 (581)
                      +.|.+|+.|++|++|++|+| ++|.++|..|...                                              
T Consensus       335 L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~  414 (876)
T 4ecn_A          335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM  414 (876)
T ss_dssp             CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred             CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence            99999999999999999999 8887765532210                                              


Q ss_pred             -----cCCCCCCEEEccC--CcCcccCCcccCCCCCCCEEECCCCcccc-----------------cCCccCc--CCCCC
Q 035922          140 -----SRCSNIILMDLSV--NQLLGNIPPEFGSLSKIKDLRSFMNNLTG-----------------SIPSSLG--NLSSI  193 (581)
Q Consensus       140 -----~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L  193 (581)
                           .....++.+.+..  |.+++ +|..++++++|++|++++|++++                 .+|..++  ++++|
T Consensus       415 ~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L  493 (876)
T 4ecn_A          415 KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL  493 (876)
T ss_dssp             CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence                 1122333444443  78887 88899999999999999999998                 3899988  99999


Q ss_pred             cEEEccCCCCCCcCCCccCCCCcccccccCCcc-CCC-CCCccccCCC-------CccEEEcccccCcccCCh--hhhcC
Q 035922          194 IRLSLTYNNIARSIPDTLGYLENLSFLSLGGNM-LSG-TIPSSIFNRS-------SITTFSVVLNRMQGNIPL--DFGFT  262 (581)
Q Consensus       194 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~~~--~~~~~  262 (581)
                      ++|++++|.+.+.+|..++++++|++|++++|+ ++| .+|..+++++       +|+.|++++|.+. .+|.  .+.. 
T Consensus       494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~-  571 (876)
T 4ecn_A          494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK-  571 (876)
T ss_dssp             CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT-
T ss_pred             CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc-
Confidence            999999999999999999999999999999998 888 7888766555       9999999999998 7877  5554 


Q ss_pred             CCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCC-CCEEEeecCcCccccc
Q 035922          263 LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN-LRRLYVWNNKLSGTIP  341 (581)
Q Consensus       263 l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~  341 (581)
                      +++|+.|++++|.+.            .+| .+..+. +|+.|++++|.+. .+|..+..+++ |++|++++|+++ .+|
T Consensus       572 L~~L~~L~Ls~N~l~------------~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          572 MVKLGLLDCVHNKVR------------HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             CTTCCEEECTTSCCC------------BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             CCCCCEEECCCCCcc------------cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence            888888777666543            345 445554 8899999999988 78888888888 999999999888 678


Q ss_pred             ccccCCCC--CCeEeccCCcccccCCccC---C--CCCCCcEEeecCcccCCCCcccc-cCCCCCcEEECCCCcccccCC
Q 035922          342 SAIGDLQN--LRMLGMSGNRFSGNIPLSV---G--NLKMLIQLEVSENFLQGTIPSSL-CQCKSLIGINFSKNNLSGTIP  413 (581)
Q Consensus       342 ~~l~~l~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ls~n~l~~~~p  413 (581)
                      ..+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.++ .+|..+ ..+++|++|++++|++. .+|
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip  713 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP  713 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence            77766654  8999999999887665332   2  3458889999999888 455544 47888999999999888 777


Q ss_pred             cchhccc--------CCcceeEcCCCcccccCCcccc--CCCCCCeeeccCCcCccccCccccCCCCCcEEECCC-----
Q 035922          414 PQLFGLS--------SLSISLDLSRNHFTGSLPIEVG--NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG-----  478 (581)
Q Consensus       414 ~~~~~l~--------~L~~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-----  478 (581)
                      ..++...        +| +.|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++     
T Consensus       714 ~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          714 ENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             TTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred             hHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence            7665433        67 88999999888 7888876  88899999999999986 788888899999998876     


Q ss_pred             -CcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCc
Q 035922          479 -NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLC  555 (581)
Q Consensus       479 -n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lc  555 (581)
                       |++.+.+|..+..+++|+.|++++|.+ +.+|..+.  ++|+.||+++|++..................+.+|+..+
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence             778888888888899999999999988 67787655  689999999998876411111112234455666666544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-51  Score=464.60  Aligned_cols=461  Identities=21%  Similarity=0.176  Sum_probs=291.1

Q ss_pred             ccccCccccCCCCCcEEECCCCCCCCCC-chhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcc
Q 035922           84 AGSISPYIGNLSFLRRLHLDNNNFTHAI-PPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE  162 (581)
Q Consensus        84 ~g~i~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  162 (581)
                      .+..+..+.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++.+|..
T Consensus        37 ~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~  116 (844)
T 3j0a_A           37 RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD  116 (844)
T ss_dssp             CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred             CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccC
Confidence            3344455555555566666555443333 445555556666666655555555555555556666666655555444433


Q ss_pred             --cCCCCCCCEEECCCCcccccCC-ccCcCCCCCcEEEccCCCCCCcCCCccCCC--CcccccccCCccCCCCCCccccC
Q 035922          163 --FGSLSKIKDLRSFMNNLTGSIP-SSLGNLSSIIRLSLTYNNIARSIPDTLGYL--ENLSFLSLGGNMLSGTIPSSIFN  237 (581)
Q Consensus       163 --l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~p~~l~~  237 (581)
                        ++++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+  ++|+.|++++|.+.+..|..+..
T Consensus       117 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~  196 (844)
T 3j0a_A          117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK  196 (844)
T ss_dssp             CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred             ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh
Confidence              5555556666666555554433 345555566666666555555555555544  55555666666555555554444


Q ss_pred             CCC------ccEEEcccccCcccCChhhhcCC--CCCceeecccc------------------------CcceeEeccCC
Q 035922          238 RSS------ITTFSVVLNRMQGNIPLDFGFTL--PNLQHFGIVFN------------------------NFTELLLLNDN  285 (581)
Q Consensus       238 l~~------L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n------------------------~~~~~l~l~~n  285 (581)
                      +.+      |+.|++++|.+.+..+..+...+  .+++.+.+..+                        .-.+.+++++|
T Consensus       197 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n  276 (844)
T 3j0a_A          197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG  276 (844)
T ss_dssp             SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC
T ss_pred             cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC
Confidence            433      66666666655555554443321  23333333211                        01244566666


Q ss_pred             cCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCC
Q 035922          286 NFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIP  365 (581)
Q Consensus       286 ~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  365 (581)
                      .+.+..|..+..+. +|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus       277 ~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          277 FVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             CCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred             cccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence            66665555555554 66666666666666666666666666666666666665556666666666666666666665555


Q ss_pred             ccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCc----------------------chhcccCCc
Q 035922          366 LSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP----------------------QLFGLSSLS  423 (581)
Q Consensus       366 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~----------------------~~~~l~~L~  423 (581)
                      ..|..+++|++|++++|.+++. +    .+++|++|++++|++. .+|.                      .+..++++ 
T Consensus       356 ~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-  428 (844)
T 3j0a_A          356 QTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHL-  428 (844)
T ss_dssp             SCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC-
T ss_pred             hhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCcc-
Confidence            5566666666666666666532 1    1333444444444333 2221                      23466777 


Q ss_pred             ceeEcCCCcccccCCc-cccCCCCCCeeeccCCcCc-----cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCE
Q 035922          424 ISLDLSRNHFTGSLPI-EVGNLKNLGVLDISGNLLS-----GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSV  497 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  497 (581)
                      +.|++++|++++..+. .+..+++|+.|++++|.++     +..+..|..+++|+.|+|++|++++..|..|..+++|+.
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  508 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG  508 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence            7888888888754332 3456788889999998886     344567889999999999999999988999999999999


Q ss_pred             EECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922          498 WDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       498 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      |++++|++++..|..+.  ++|++|++++|++++. +|.  .+.+++.+++.|||+.|.+
T Consensus       509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~-~~~--~~~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP-NPD--VFVSLSVLDITHNKFICEC  563 (844)
T ss_dssp             EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC-CSC--CCSSCCEEEEEEECCCCSS
T ss_pred             eECCCCCCCccChhhhh--ccccEEECCCCcCCCC-Chh--HhCCcCEEEecCCCccccc
Confidence            99999999987777666  8999999999999997 664  4778999999999999954

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-50  Score=435.69  Aligned_cols=450  Identities=21%  Similarity=0.194  Sum_probs=376.1

Q ss_pred             CCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEEC
Q 035922           95 SFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRS  174 (581)
Q Consensus        95 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  174 (581)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            46788888888888777778888888888888888888777778888888888888888888777788888888888888


Q ss_pred             CCCcccccCCccCcCCCCCcEEEccCCCCCC-cCCCccCCCCcccccccCCccCCCCCCccccCCCCc----cEEEcccc
Q 035922          175 FMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSI----TTFSVVLN  249 (581)
Q Consensus       175 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L----~~L~l~~n  249 (581)
                      ++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..+..+++|    +.++++.|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            8888886555568888888888888888876 467888888888888888888886666777777777    78888888


Q ss_pred             cCcccCChhhhcCCCCCceeeccccCcc----------------------------------------------eeEecc
Q 035922          250 RMQGNIPLDFGFTLPNLQHFGIVFNNFT----------------------------------------------ELLLLN  283 (581)
Q Consensus       250 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~----------------------------------------------~~l~l~  283 (581)
                      .+.+..+..+..  .+|+.+++.+|...                                              +.+++.
T Consensus       188 ~l~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          188 PMNFIQPGAFKE--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             CCCEECTTTTTT--CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CceecCHHHhcc--CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            887666554432  36777777665211                                              223334


Q ss_pred             CC-cCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccc
Q 035922          284 DN-NFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG  362 (581)
Q Consensus       284 ~n-~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  362 (581)
                      .+ .+.+.+|+.+..+. +|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+.+
T Consensus       266 ~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             ETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred             cchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence            44 55666777777775 9999999999998 578888888 9999999999998 5665  478999999999999887


Q ss_pred             cCCccCCCCCCCcEEeecCcccCCCC--cccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC-c
Q 035922          363 NIPLSVGNLKMLIQLEVSENFLQGTI--PSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP-I  439 (581)
Q Consensus       363 ~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p-~  439 (581)
                      ..+.  ..+++|++|++++|.+++..  |..+..+++|++|++++|.+.+ ++..+..++++ +.|++++|.+++..+ .
T Consensus       340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L-~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL-EHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTC-CEEECTTSEEESCTTSC
T ss_pred             cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCC-CEEEccCCccccccchh
Confidence            6654  67899999999999998654  6778899999999999999984 45558899999 899999999997666 5


Q ss_pred             cccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCc-ccCcccccCCCCCCEEECCCCccccccchhhhcCCC
Q 035922          440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY-GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL  518 (581)
Q Consensus       440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  518 (581)
                      .+.++++|++|++++|++++..|..+..+++|++|++++|++. +.+|..+..+++|+.|++++|++++..|..+..+++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            6889999999999999999889999999999999999999998 578999999999999999999999988999999999


Q ss_pred             CCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922          519 LENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       519 L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      |++|++++|++++. .|. ...+++|+.+++.+||+.|..
T Consensus       496 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          496 LQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             CCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCcccCCC
Confidence            99999999999986 554 477899999999999988864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-49  Score=428.96  Aligned_cols=468  Identities=19%  Similarity=0.177  Sum_probs=371.8

Q ss_pred             CccccCCCCc----ccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEE
Q 035922           74 FCKWHESLKL----AGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMD  149 (581)
Q Consensus        74 ~c~w~~~~~~----~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  149 (581)
                      .|.|.+.+..    ...+|+.+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|.+|+.+++|++|+
T Consensus         3 ~C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            3 SCDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            3666653322    235666553  7899999999999988899999999999999999999988889999999999999


Q ss_pred             ccCCcCcccCCcccCCCCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCC-CccCCCCcccccccCCccC
Q 035922          150 LSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIP-DTLGYLENLSFLSLGGNML  227 (581)
Q Consensus       150 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l  227 (581)
                      +++|.+++..|..++++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|++
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            99999998888889999999999999999986 467789999999999999999545554 6899999999999999999


Q ss_pred             CCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcce----------------eEeccCCcCcccC
Q 035922          228 SGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTE----------------LLLLNDNNFGGLI  291 (581)
Q Consensus       228 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~----------------~l~l~~n~l~~~~  291 (581)
                      ++..|..+..+++|++|+++.|.+. .++..+...+++|+.|++++|.+..                .+++++|.+++..
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            9999999999999999999999875 5566665569999999999887753                3555555555544


Q ss_pred             chhhhh---cccCCcEEEccCCcccccC------chhhcCCCCCCEEEeecCcCccc-----ccccccCCCCCCeEeccC
Q 035922          292 PECISN---FSTTLASLFLDNNKIFGSI------PPGIGKLVNLRRLYVWNNKLSGT-----IPSAIGDLQNLRMLGMSG  357 (581)
Q Consensus       292 p~~~~~---~~~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~  357 (581)
                      +..+..   ..++|+.+++++|.+.+..      ...+..+++|+.|++.++.+...     ++..+...++|++|++++
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence            433321   1136677777777665421      12234566677777777655421     112223456789999999


Q ss_pred             CcccccCCccC-CCCCCCcEEeecCcccCCCCc---ccccCCCCCcEEECCCCcccccCC--cchhcccCCcceeEcCCC
Q 035922          358 NRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIP---SSLCQCKSLIGINFSKNNLSGTIP--PQLFGLSSLSISLDLSRN  431 (581)
Q Consensus       358 n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~~L~Ls~n  431 (581)
                      |.+. .+|..+ ..+++|++|++++|++++.+|   ..+..+++|++|++++|++++..+  ..+..++++ ++|++++|
T Consensus       320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N  397 (549)
T 2z81_A          320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRN  397 (549)
T ss_dssp             SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTTC
T ss_pred             Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCCC
Confidence            9887 666665 468999999999999987664   346788999999999999974322  457788888 89999999


Q ss_pred             cccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccch
Q 035922          432 HFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK  511 (581)
Q Consensus       432 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~  511 (581)
                      +++ .+|..+..+++|++|++++|+++ .+|..+  .++|++|++++|++++.+    ..+++|+.|++++|+++ .+|.
T Consensus       398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~  468 (549)
T 2z81_A          398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD  468 (549)
T ss_dssp             CCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC
T ss_pred             CCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC
Confidence            998 68888888999999999999988 455443  368999999999998643    57889999999999998 6676


Q ss_pred             hhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922          512 FLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       512 ~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~  557 (581)
                       ...+++|++|++++|++++. +|. .+.+++|+.+++++||+.|..
T Consensus       469 -~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          469 -ASLFPVLLVMKISRNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             -GGGCTTCCEEECCSSCCCCC-CTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             -cccCccCCEEecCCCccCCc-CHHHHhcCcccCEEEecCCCccCCC
Confidence             46789999999999999986 665 578889999999999988864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-48  Score=423.87  Aligned_cols=464  Identities=21%  Similarity=0.196  Sum_probs=382.0

Q ss_pred             CcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCc
Q 035922           82 KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPP  161 (581)
Q Consensus        82 ~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  161 (581)
                      .+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|.+|+.+++|++|++++|.+++..+.
T Consensus        39 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  118 (570)
T 2z63_A           39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF  118 (570)
T ss_dssp             CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred             ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc
Confidence            34455566889999999999999999988888999999999999999999988889999999999999999999976666


Q ss_pred             ccCCCCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcc----cccccCCccCCCCCCcccc
Q 035922          162 EFGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL----SFLSLGGNMLSGTIPSSIF  236 (581)
Q Consensus       162 ~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L----~~L~l~~n~l~~~~p~~l~  236 (581)
                      .++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++|    +++++++|.+++..|..+.
T Consensus       119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~  198 (570)
T 2z63_A          119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (570)
T ss_dssp             SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred             cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence            79999999999999999987 579999999999999999999998888888888888    8899999999966666555


Q ss_pred             CCCCccEEEcccccCcccCChhhhcCCC--------------------------------CCceeecccc----------
Q 035922          237 NRSSITTFSVVLNRMQGNIPLDFGFTLP--------------------------------NLQHFGIVFN----------  274 (581)
Q Consensus       237 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~--------------------------------~L~~L~l~~n----------  274 (581)
                      .. +|+.+++++|.............++                                .++.+++..+          
T Consensus       199 ~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~  277 (570)
T 2z63_A          199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL  277 (570)
T ss_dssp             TC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT
T ss_pred             cC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh
Confidence            44 7999988876322110000000011                                1122222222          


Q ss_pred             ----CcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCC
Q 035922          275 ----NFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNL  350 (581)
Q Consensus       275 ----~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  350 (581)
                          .-.+.+++++|.+. .+|..+...  +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|
T Consensus       278 ~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L  349 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSL  349 (570)
T ss_dssp             TGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred             hcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCC
Confidence                11144555666655 467777665  8999999999998 5665  5789999999999998876654  688999


Q ss_pred             CeEeccCCcccccC--CccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeE
Q 035922          351 RMLGMSGNRFSGNI--PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLD  427 (581)
Q Consensus       351 ~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~  427 (581)
                      ++|++++|.+++..  +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..++++ ++|+
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~  427 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLD  427 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEE
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCC-CEEe
Confidence            99999999998654  6678899999999999999986544 49999999999999999987666 467889999 8999


Q ss_pred             cCCCcccccCCccccCCCCCCeeeccCCcCc-cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922          428 LSRNHFTGSLPIEVGNLKNLGVLDISGNLLS-GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       428 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      +++|.+++..|..+..+++|++|++++|+++ +.+|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.++
T Consensus       428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            9999999999999999999999999999998 679999999999999999999999988999999999999999999999


Q ss_pred             cccchhhhcCCCCCEEECcCCCCCCCCCCCcccc-CCc--CcccccCCCCCccCC
Q 035922          507 GEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVI-KNS--SATSVMGNSKLCGGI  558 (581)
Q Consensus       507 ~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~-~~l--~~l~~~gN~~lcg~~  558 (581)
                      +..|..+..+++|++|++++|++++. +|....+ .-+  ....+.+.+ .|..+
T Consensus       508 ~~~~~~~~~l~~L~~L~l~~N~~~~~-~~~~~~~~~wl~~~~~~~~~~~-~C~~~  560 (570)
T 2z63_A          508 SVPDGIFDRLTSLQKIWLHTNPWDCS-CPRIDYLSRWLNKNSQKEQGSA-KCSGS  560 (570)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC-TTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred             CCCHHHhhcccCCcEEEecCCcccCC-CcchHHHHHHHHhccccCCCch-hhCCC
Confidence            98888899999999999999999998 8865433 111  123455555 77543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=434.30  Aligned_cols=456  Identities=20%  Similarity=0.228  Sum_probs=382.5

Q ss_pred             CCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCC-cccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922           93 NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEI-PATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD  171 (581)
Q Consensus        93 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (581)
                      -.+++++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|.+.+..|..|+++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            4578999999999999989999999999999999999766666 789999999999999999999999999999999999


Q ss_pred             EECCCCcccccCCcc--CcCCCCCcEEEccCCCCCCcCC-CccCCCCcccccccCCccCCCCCCccccCC--CCccEEEc
Q 035922          172 LRSFMNNLTGSIPSS--LGNLSSIIRLSLTYNNIARSIP-DTLGYLENLSFLSLGGNMLSGTIPSSIFNR--SSITTFSV  246 (581)
Q Consensus       172 L~L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l  246 (581)
                      |++++|.+++.+|..  +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+  ++|+.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            999999999877765  9999999999999999988765 579999999999999999998888888877  89999999


Q ss_pred             ccccCcccCChhhhcCCC------CCceeeccccCcc----------------eeEecc---------CCcCcccCchhh
Q 035922          247 VLNRMQGNIPLDFGFTLP------NLQHFGIVFNNFT----------------ELLLLN---------DNNFGGLIPECI  295 (581)
Q Consensus       247 ~~n~l~~~~~~~~~~~l~------~L~~L~l~~n~~~----------------~~l~l~---------~n~l~~~~p~~~  295 (581)
                      +.|.+.+..+..+.. ++      .|+.|++++|.+.                ..+.+.         .+.+.+..+..+
T Consensus       182 ~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          182 AANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             CCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence            999999888776544 33      3889998888553                122222         122222222233


Q ss_pred             hhc-ccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCC
Q 035922          296 SNF-STTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML  374 (581)
Q Consensus       296 ~~~-~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  374 (581)
                      ..+ .++|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV  340 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred             hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence            322 2489999999999998889999999999999999999998889999999999999999999998889999999999


Q ss_pred             cEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCc---------------
Q 035922          375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI---------------  439 (581)
Q Consensus       375 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~---------------  439 (581)
                      +.|++++|.+.+..+..+..+++|++|++++|.+. .++.    ++++ +.|++++|+++ .+|.               
T Consensus       341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~----~~~L-~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l  413 (844)
T 3j0a_A          341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF----IPSI-PDIFLSGNKLV-TLPKINLTANLIHLSENRL  413 (844)
T ss_dssp             CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS----CCSC-SEEEEESCCCC-CCCCCCTTCCEEECCSCCC
T ss_pred             CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC----CCCc-chhccCCCCcc-cccccccccceeecccCcc
Confidence            99999999999888888999999999999999998 3332    4445 55666655554 2222               


Q ss_pred             -------cccCCCCCCeeeccCCcCccccCc-cccCCCCCcEEECCCCcCc-----ccCcccccCCCCCCEEECCCCccc
Q 035922          440 -------EVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFY-----GPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       440 -------~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                             .+.++++|++|++++|++++..+. .+..+++|+.|++++|.+.     +..+..|..+++|+.|++++|.++
T Consensus       414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  493 (844)
T 3j0a_A          414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN  493 (844)
T ss_dssp             CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred             ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence                   244788999999999999854433 3566899999999999987     445567889999999999999999


Q ss_pred             cccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCC
Q 035922          507 GEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIP  559 (581)
Q Consensus       507 ~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~  559 (581)
                      +.+|..+..+++|++|++++|++++.  |.....++|+.+++++|. +.+.+|
T Consensus       494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~~~L~~L~Ls~N~-l~~~~~  543 (844)
T 3j0a_A          494 SLPPGVFSHLTALRGLSLNSNRLTVL--SHNDLPANLEILDISRNQ-LLAPNP  543 (844)
T ss_dssp             TCCTTSSSSCCSCSEEEEESCCCSSC--CCCCCCSCCCEEEEEEEC-CCCCCS
T ss_pred             ccChhHccchhhhheeECCCCCCCcc--ChhhhhccccEEECCCCc-CCCCCh
Confidence            99999999999999999999999984  444444899999999997 555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.1e-50  Score=437.34  Aligned_cols=425  Identities=18%  Similarity=0.227  Sum_probs=334.6

Q ss_pred             CCCcccccCccccCCCCCcEEECCCCCC------CC------CCchhccCCCCCCEEEccCCCCCCCCcccCcCC-----
Q 035922           80 SLKLAGSISPYIGNLSFLRRLHLDNNNF------TH------AIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRC-----  142 (581)
Q Consensus        80 ~~~~~g~i~~~~~~l~~L~~L~Ls~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-----  142 (581)
                      ..++.|.+|+.++++++|++|+|++|.+      .+      .+|...  +..|+ ++++++.+.+.+|..++.+     
T Consensus        90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~  166 (636)
T 4eco_A           90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCI  166 (636)
T ss_dssp             TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHh
Confidence            5678999999999999999999999976      22      334333  44555 6666666666655554411     


Q ss_pred             --------------CCCCEEEcc--CCcCcccCCcccCCCCCCCEEECCCCccccc-----------------CCccCc-
Q 035922          143 --------------SNIILMDLS--VNQLLGNIPPEFGSLSKIKDLRSFMNNLTGS-----------------IPSSLG-  188 (581)
Q Consensus       143 --------------~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~-  188 (581)
                                    ..++.+.+.  +|.+++ +|..++++++|++|++++|.+++.                 +|..++ 
T Consensus       167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~  245 (636)
T 4eco_A          167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW  245 (636)
T ss_dssp             HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred             hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence                          112222222  466666 677777777777777777777764                 777777 


Q ss_pred             -CCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCcc-CCC-CCCccccCC------CCccEEEcccccCcccCCh--
Q 035922          189 -NLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNM-LSG-TIPSSIFNR------SSITTFSVVLNRMQGNIPL--  257 (581)
Q Consensus       189 -~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~~~--  257 (581)
                       ++++|++|++++|.+.+.+|..++++++|++|++++|+ ++| .+|..++.+      ++|++|++++|.+. .+|.  
T Consensus       246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~  324 (636)
T 4eco_A          246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET  324 (636)
T ss_dssp             GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred             cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence             77777777777777777777777777777777777777 776 677766665      77777777777777 6666  


Q ss_pred             hhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCC-CCEEEeecCcC
Q 035922          258 DFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN-LRRLYVWNNKL  336 (581)
Q Consensus       258 ~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l  336 (581)
                      .+.. +++|+.|++++           |.++|.+| .+..+. +|++|++++|.++ .+|..+..+++ |++|++++|++
T Consensus       325 ~l~~-l~~L~~L~L~~-----------N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          325 SLQK-MKKLGMLECLY-----------NQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             HHTT-CTTCCEEECCS-----------CCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred             hhcc-CCCCCEEeCcC-----------CcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence            4443 67776655544           34455566 555554 8999999999998 78888999999 99999999999


Q ss_pred             cccccccccCCC--CCCeEeccCCcccccCCccCC-------CCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCc
Q 035922          337 SGTIPSAIGDLQ--NLRMLGMSGNRFSGNIPLSVG-------NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN  407 (581)
Q Consensus       337 ~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~  407 (581)
                      + .+|..+..++  +|++|++++|.+++..|..+.       .+++|++|++++|.++...+..+..+++|++|++++|+
T Consensus       390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred             c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence            9 7888777654  899999999999998888888       78899999999999995444445669999999999999


Q ss_pred             ccccCCcchhccc--------CCcceeEcCCCcccccCCcccc--CCCCCCeeeccCCcCccccCccccCCCCCcEEEC-
Q 035922          408 LSGTIPPQLFGLS--------SLSISLDLSRNHFTGSLPIEVG--NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM-  476 (581)
Q Consensus       408 l~~~~p~~~~~l~--------~L~~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-  476 (581)
                      +. .+|..++...        ++ +.|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|+.|++ 
T Consensus       469 l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          469 LT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             CS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             CC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            99 7887665533        77 89999999999 7888887  99999999999999996 8999999999999999 


Q ss_pred             -----CCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922          477 -----QGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       477 -----s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                           ++|++.+.+|..+..+++|+.|++++|.+ +.+|..+.  ++|++|++++|++...
T Consensus       545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence                 56888899999999999999999999999 67888765  8999999999988753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2e-47  Score=410.46  Aligned_cols=448  Identities=20%  Similarity=0.173  Sum_probs=372.4

Q ss_pred             ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922           86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS  165 (581)
Q Consensus        86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  165 (581)
                      .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..  .
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~   88 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P   88 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence            4666555  89999999999999888889999999999999999999888899999999999999999998 46655  8


Q ss_pred             CCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcc--cccccCCccC--CCCCCccccCCC-
Q 035922          166 LSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL--SFLSLGGNML--SGTIPSSIFNRS-  239 (581)
Q Consensus       166 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~l~-  239 (581)
                      +++|++|++++|++++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..+. 
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~  165 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT  165 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc
Confidence            9999999999999987 578899999999999999999976   356677777  9999999999  778888887765 


Q ss_pred             CccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchh
Q 035922          240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG  319 (581)
Q Consensus       240 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~  319 (581)
                      ....++++.|.+.+.++......+++|+.+++++|...    .....+.+.+| .+..+. +|+.|++++|.+.+..+..
T Consensus       166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~~-~l~~l~-~L~~L~l~~~~l~~~~~~~  239 (520)
T 2z7x_B          166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED----NKCSYFLSILA-KLQTNP-KLSNLTLNNIETTWNSFIR  239 (520)
T ss_dssp             EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST----TTTHHHHHHHH-GGGGCT-TCCEEEEEEEEEEHHHHHH
T ss_pred             ceEEEEeccCcchhhhhhhhhhcccceeeccccccccc----cccceeecchh-hhcccc-chhhccccccccCHHHHHH
Confidence            45567788888888888777667888888888776411    00011334444 556665 8999999999887653322


Q ss_pred             hc---CCCCCCEEEeecCcCcccccccc-----cCCCCCCeEeccCCcccccCC-ccCCCC---CCCcEEeecCcccCCC
Q 035922          320 IG---KLVNLRRLYVWNNKLSGTIPSAI-----GDLQNLRMLGMSGNRFSGNIP-LSVGNL---KMLIQLEVSENFLQGT  387 (581)
Q Consensus       320 l~---~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~  387 (581)
                      +.   ..++|++|++++|+++|.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+...
T Consensus       240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~  317 (520)
T 2z7x_B          240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM  317 (520)
T ss_dssp             HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred             HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc
Confidence            21   24689999999999999999888     8999999999999998  455 344333   6799999999998754


Q ss_pred             CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc--cCCccccCCCCCCeeeccCCcCccccCcc-
Q 035922          388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG--SLPIEVGNLKNLGVLDISGNLLSGEIPIS-  464 (581)
Q Consensus       388 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-  464 (581)
                      .  ....+++|++|++++|++.+.+|..+..++++ +.|++++|++++  .+|..+..+++|++|++++|++++.+|.. 
T Consensus       318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             c--chhhCCcccEEEeECCccChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence            2  12688999999999999998899999999999 899999999996  56778999999999999999999757754 


Q ss_pred             ccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC--ccccCC
Q 035922          465 LGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT--EGVIKN  542 (581)
Q Consensus       465 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~--~~~~~~  542 (581)
                      +..+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++  +|.  ...+++
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~  469 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS--VPDGIFDRLTS  469 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTT
T ss_pred             hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc--cCHHHhccCCc
Confidence            88899999999999999988887664  79999999999999 788888899999999999999985  665  467888


Q ss_pred             cCcccccCCCCCccC
Q 035922          543 SSATSVMGNSKLCGG  557 (581)
Q Consensus       543 l~~l~~~gN~~lcg~  557 (581)
                      |+.+++++||+.|..
T Consensus       470 L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          470 LQKIWLHTNPWDCSC  484 (520)
T ss_dssp             CCEEECCSSCBCCCH
T ss_pred             ccEEECcCCCCcccC
Confidence            999999999998853

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.2e-47  Score=405.66  Aligned_cols=427  Identities=22%  Similarity=0.231  Sum_probs=360.5

Q ss_pred             CcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcc-cCC
Q 035922           82 KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG-NIP  160 (581)
Q Consensus        82 ~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p  160 (581)
                      .+.+..|..+.++++|++|+|++|.+++..|+.|+++++|++|+|++|.++ .+|..  .+++|++|++++|.+++ .+|
T Consensus        32 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p  108 (520)
T 2z7x_B           32 YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPIC  108 (520)
T ss_dssp             CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCC
T ss_pred             cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccch
Confidence            345555568999999999999999999888999999999999999999999 67766  89999999999999997 578


Q ss_pred             cccCCCCCCCEEECCCCcccccCCccCcCCCCC--cEEEccCCCC--CCcCCCccCCCC-cccccccCCccCCCCCCc-c
Q 035922          161 PEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSI--IRLSLTYNNI--ARSIPDTLGYLE-NLSFLSLGGNMLSGTIPS-S  234 (581)
Q Consensus       161 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~-~  234 (581)
                      ..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.++. .
T Consensus       109 ~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~  185 (520)
T 2z7x_B          109 KEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS  185 (520)
T ss_dssp             GGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC
T ss_pred             hhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhh
Confidence            999999999999999999986   356777788  9999999999  888888887776 345678899998877765 4


Q ss_pred             ccCCCCccEEEccccc-------CcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEc
Q 035922          235 IFNRSSITTFSVVLNR-------MQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFL  307 (581)
Q Consensus       235 l~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L  307 (581)
                      +..+++|+.+++++|.       +.+.++ .+. .+++|+.|++..|.+..      +.+.+..+ ... . ++|++|++
T Consensus       186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~l~~------~~~~~~~~-~~~-~-~~L~~L~l  254 (520)
T 2z7x_B          186 VKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ-TNPKLSNLTLNNIETTW------NSFIRILQ-LVW-H-TTVWYFSI  254 (520)
T ss_dssp             CTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG-GCTTCCEEEEEEEEEEH------HHHHHHHH-HHH-T-SSCSEEEE
T ss_pred             hhcccceeeccccccccccccceeecchh-hhc-cccchhhccccccccCH------HHHHHHHH-Hhh-h-CcccEEEe
Confidence            6688999999999987       666555 444 38999999887765431      12222111 111 1 48999999


Q ss_pred             cCCcccccCchhh-----cCCCCCCEEEeecCcCccccc-ccccCC---CCCCeEeccCCcccccCCccCCCCCCCcEEe
Q 035922          308 DNNKIFGSIPPGI-----GKLVNLRRLYVWNNKLSGTIP-SAIGDL---QNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE  378 (581)
Q Consensus       308 ~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  378 (581)
                      ++|.+++.+|..+     +.+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|+
T Consensus       255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~  330 (520)
T 2z7x_B          255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD  330 (520)
T ss_dssp             EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred             ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence            9999999999988     8999999999999998  455 444444   67999999999987432  126889999999


Q ss_pred             ecCcccCCCCcccccCCCCCcEEECCCCcccc--cCCcchhcccCCcceeEcCCCcccccCCcc-ccCCCCCCeeeccCC
Q 035922          379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSG--TIPPQLFGLSSLSISLDLSRNHFTGSLPIE-VGNLKNLGVLDISGN  455 (581)
Q Consensus       379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n  455 (581)
                      +++|++++.+|..+..+++|++|++++|++.+  .+|..+..++++ +.|++++|++++.+|.. +..+++|++|++++|
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N  409 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN  409 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence            99999999899999999999999999999986  667888999999 89999999999867764 788999999999999


Q ss_pred             cCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccch-hhhcCCCCCEEECcCCCCCCCCC
Q 035922          456 LLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYV  534 (581)
Q Consensus       456 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~~i  534 (581)
                      ++++.+|..+.  ++|+.|++++|++. .+|..+..+++|+.|++++|+++. +|. .+..+++|++|++++|++++. .
T Consensus       410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~-c  484 (520)
T 2z7x_B          410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS-C  484 (520)
T ss_dssp             CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC-H
T ss_pred             CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc-C
Confidence            99988887664  79999999999998 788888899999999999999995 555 499999999999999999986 5


Q ss_pred             C
Q 035922          535 P  535 (581)
Q Consensus       535 p  535 (581)
                      +
T Consensus       485 ~  485 (520)
T 2z7x_B          485 P  485 (520)
T ss_dssp             H
T ss_pred             C
Confidence            5

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.3e-47  Score=423.22  Aligned_cols=425  Identities=19%  Similarity=0.255  Sum_probs=347.3

Q ss_pred             CCCcccccCccccCCCCCcEEEC-CCCCCCCCCchhc-------------------------------------------
Q 035922           80 SLKLAGSISPYIGNLSFLRRLHL-DNNNFTHAIPPEI-------------------------------------------  115 (581)
Q Consensus        80 ~~~~~g~i~~~~~~l~~L~~L~L-s~n~l~~~~p~~l-------------------------------------------  115 (581)
                      ..++.|.+|+.++++++|++|+| ++|.++|..|...                                           
T Consensus       332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence            46688999999999999999999 8887665522110                                           


Q ss_pred             --------cCCCCCCEEEccC--CCCCCCCcccCcCCCCCCEEEccCCcCcc-----------------cCCcccC--CC
Q 035922          116 --------GRLRRLRGLTLNN--NSIGGEIPATMSRCSNIILMDLSVNQLLG-----------------NIPPEFG--SL  166 (581)
Q Consensus       116 --------~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l  166 (581)
                              .....++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .+|+.++  ++
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L  490 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL  490 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred             ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence                    1122333333433  77776 88899999999999999999988                 3888887  99


Q ss_pred             CCCCEEECCCCcccccCCccCcCCCCCcEEEccCCC-CCC-cCCCccCCCC-------cccccccCCccCCCCCCc--cc
Q 035922          167 SKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN-IAR-SIPDTLGYLE-------NLSFLSLGGNMLSGTIPS--SI  235 (581)
Q Consensus       167 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~p~--~l  235 (581)
                      ++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++       +|++|++++|+++ .+|.  .+
T Consensus       491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l  569 (876)
T 4ecn_A          491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL  569 (876)
T ss_dssp             TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred             CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence            999999999999999999999999999999999998 887 7777665554       9999999999999 8888  89


Q ss_pred             cCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccC-CcEEEccCCcccc
Q 035922          236 FNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTT-LASLFLDNNKIFG  314 (581)
Q Consensus       236 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~-L~~L~L~~n~l~~  314 (581)
                      .++++|+.|++++|.+. .+| .+. .+++|+.|++++|.           ++ .+|..+..+. + |+.|++++|.++ 
T Consensus       570 ~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~-----------l~-~lp~~l~~l~-~~L~~L~Ls~N~L~-  632 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQ-----------IE-EIPEDFCAFT-DQVEGLGFSHNKLK-  632 (876)
T ss_dssp             TTCTTCCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSC-----------CS-CCCTTSCEEC-TTCCEEECCSSCCC-
T ss_pred             hcCCCCCEEECCCCCcc-cch-hhc-CCCcceEEECcCCc-----------cc-cchHHHhhcc-ccCCEEECcCCCCC-
Confidence            99999999999999988 777 433 37777776665554           44 5777777776 6 999999999998 


Q ss_pred             cCchhhcCCCC--CCEEEeecCcCccccccc---cc--CCCCCCeEeccCCcccccCCccC-CCCCCCcEEeecCcccCC
Q 035922          315 SIPPGIGKLVN--LRRLYVWNNKLSGTIPSA---IG--DLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQG  386 (581)
Q Consensus       315 ~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~  386 (581)
                      .+|..+..++.  |+.|++++|++++.+|..   +.  .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|+++ 
T Consensus       633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-  710 (876)
T 4ecn_A          633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-  710 (876)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred             cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence            77887776654  999999999998766532   22  3458999999999998 566554 47899999999999998 


Q ss_pred             CCcccccCC--------CCCcEEECCCCcccccCCcchh--cccCCcceeEcCCCcccccCCccccCCCCCCeeeccC--
Q 035922          387 TIPSSLCQC--------KSLIGINFSKNNLSGTIPPQLF--GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISG--  454 (581)
Q Consensus       387 ~~p~~l~~l--------~~L~~L~ls~n~l~~~~p~~~~--~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~--  454 (581)
                      .+|..+...        ++|++|++++|++. .+|..+.  .+++| +.|++++|++++ +|..+..+++|+.|+|++  
T Consensus       711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred             ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence            666554432        38999999999999 8898887  89999 899999999996 898999999999999976  


Q ss_pred             ----CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922          455 ----NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG  530 (581)
Q Consensus       455 ----n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  530 (581)
                          |++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.||+++|++....+..+.....+..+.+.+|++.
T Consensus       788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence                888889999999999999999999999 68898765  69999999999998777777766667778888888765


Q ss_pred             C
Q 035922          531 A  531 (581)
Q Consensus       531 ~  531 (581)
                      .
T Consensus       865 ~  865 (876)
T 4ecn_A          865 D  865 (876)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.4e-46  Score=404.87  Aligned_cols=441  Identities=18%  Similarity=0.186  Sum_probs=371.3

Q ss_pred             CCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcc-cC
Q 035922           81 LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG-NI  159 (581)
Q Consensus        81 ~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~  159 (581)
                      ..+.+..|..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..
T Consensus        36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  115 (549)
T 2z81_A           36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV  115 (549)
T ss_dssp             SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred             CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence            34556667789999999999999999999888999999999999999999998888889999999999999999986 46


Q ss_pred             CcccCCCCCCCEEECCCCcccccCC-ccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccc-cC
Q 035922          160 PPEFGSLSKIKDLRSFMNNLTGSIP-SSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSI-FN  237 (581)
Q Consensus       160 p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~  237 (581)
                      |..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++.+++|++|++++|.+. .+|..+ ..
T Consensus       116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~  194 (549)
T 2z81_A          116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADI  194 (549)
T ss_dssp             SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHS
T ss_pred             hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhh
Confidence            7789999999999999999555665 67999999999999999999999999999999999999999986 555544 46


Q ss_pred             CCCccEEEcccccCcccC--ChhhhcCCCCCceeeccccCcc-----------------eeEeccCCcCcccC------c
Q 035922          238 RSSITTFSVVLNRMQGNI--PLDFGFTLPNLQHFGIVFNNFT-----------------ELLLLNDNNFGGLI------P  292 (581)
Q Consensus       238 l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~~~-----------------~~l~l~~n~l~~~~------p  292 (581)
                      +++|++|++++|.+.+..  +..+...+++|+.|++.+|.+.                 +.+++++|.+.+..      .
T Consensus       195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  274 (549)
T 2z81_A          195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES  274 (549)
T ss_dssp             TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTT
T ss_pred             cccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccch
Confidence            899999999999998742  3333445788999998887654                 55777777766531      1


Q ss_pred             hhhhhcccCCcEEEccCCccccc-----CchhhcCCCCCCEEEeecCcCcccccccc-cCCCCCCeEeccCCcccccCC-
Q 035922          293 ECISNFSTTLASLFLDNNKIFGS-----IPPGIGKLVNLRRLYVWNNKLSGTIPSAI-GDLQNLRMLGMSGNRFSGNIP-  365 (581)
Q Consensus       293 ~~~~~~~~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~-  365 (581)
                      ..+..+ ++++.|++.++.+...     ++......++|++|++++|+++ .+|..+ ..+++|++|++++|.+++.+| 
T Consensus       275 ~~~~~l-~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~  352 (549)
T 2z81_A          275 DVVSEL-GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK  352 (549)
T ss_dssp             TCCCCC-TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH
T ss_pred             hhhhhh-cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc
Confidence            122333 3899999999876532     2333445678999999999998 667665 579999999999999998664 


Q ss_pred             --ccCCCCCCCcEEeecCcccCCCCc--ccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccc
Q 035922          366 --LSVGNLKMLIQLEVSENFLQGTIP--SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV  441 (581)
Q Consensus       366 --~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l  441 (581)
                        ..++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..++++ ++|++++|+++ .+|..+
T Consensus       353 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~-~l~~~~  429 (549)
T 2z81_A          353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIR-VVKTCI  429 (549)
T ss_dssp             HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCS-CCCTTS
T ss_pred             chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcc-cccchh
Confidence              347889999999999999986532  45888999999999999999 789999899999 89999999998 455544


Q ss_pred             cCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCE
Q 035922          442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLEN  521 (581)
Q Consensus       442 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  521 (581)
                        .++|++|++++|++++.+    ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|+.+..+++|++
T Consensus       430 --~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  501 (549)
T 2z81_A          430 --PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK  501 (549)
T ss_dssp             --CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred             --cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence              368999999999998643    57899999999999998 6776 578999999999999999999999999999999


Q ss_pred             EECcCCCCCCCCCCC
Q 035922          522 VNLSYNDLGARYVPT  536 (581)
Q Consensus       522 L~ls~N~l~~~~ip~  536 (581)
                      |++++|++.+. +|.
T Consensus       502 L~l~~N~~~~~-~~~  515 (549)
T 2z81_A          502 IWLHTNPWDCS-CPR  515 (549)
T ss_dssp             EECCSSCBCCC-HHH
T ss_pred             EEecCCCccCC-Ccc
Confidence            99999999988 774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.6e-45  Score=401.58  Aligned_cols=460  Identities=20%  Similarity=0.165  Sum_probs=342.9

Q ss_pred             ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922           86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS  165 (581)
Q Consensus        86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  165 (581)
                      .||+.+.  +++++|||++|.|++..+.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.+
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            3554442  47899999999999888889999999999999999999887889999999999999999999887888999


Q ss_pred             CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCC-cCCCccCCCCcccccccCCccCCCCCCccccCCCC----
Q 035922          166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSS----  240 (581)
Q Consensus       166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~----  240 (581)
                      +++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..+.+    
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~  202 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL  202 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence            9999999999999997777789999999999999999976 46788899999999999999999777766654433    


Q ss_pred             ccEEEcccccCcccCChhhhcCCCCCceeeccccCcc-------------------------------------------
Q 035922          241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT-------------------------------------------  277 (581)
Q Consensus       241 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-------------------------------------------  277 (581)
                      ...++++.|.+....+..+.  ...++.+++..|...                                           
T Consensus       203 ~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  280 (635)
T 4g8a_A          203 NLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN  280 (635)
T ss_dssp             CCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred             hhhhhcccCcccccCccccc--chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence            33566666666533222111  122233333322111                                           


Q ss_pred             -eeEeccCCc---CcccCchhhhhcc---------------------cCCcEEEccCCcccccCchhhcCCCCCCEEEee
Q 035922          278 -ELLLLNDNN---FGGLIPECISNFS---------------------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW  332 (581)
Q Consensus       278 -~~l~l~~n~---l~~~~p~~~~~~~---------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  332 (581)
                       ....+..+.   ....++..+....                     ..++.|++.+|.+.+..+   ..++.|+.+++.
T Consensus       281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~  357 (635)
T 4g8a_A          281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFT  357 (635)
T ss_dssp             SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEE
T ss_pred             hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhhcccc
Confidence             000000000   0001111111111                     234444444444432221   123445555555


Q ss_pred             cCcCcccccccccCCCCCCeEeccCCcccc--cCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccc
Q 035922          333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSG--NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG  410 (581)
Q Consensus       333 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  410 (581)
                      +|.....  .....+++|+.+++++|.+..  ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++++....
T Consensus       358 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~  434 (635)
T 4g8a_A          358 SNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ  434 (635)
T ss_dssp             SCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEES
T ss_pred             cccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccc
Confidence            5544422  123457788888888887653  344455667788888888887664 34567788999999999988775


Q ss_pred             cCC-cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcC-ccccCccccCCCCCcEEECCCCcCcccCccc
Q 035922          411 TIP-PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLL-SGEIPISLGSCTSLEKLLMQGNKFYGPIPSS  488 (581)
Q Consensus       411 ~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  488 (581)
                      ..+ ..+..+..+ +.++++.|.+.+..+..+..++.++.|++++|.+ .+..|..+..+++|++|+|++|++.+..|..
T Consensus       435 ~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  513 (635)
T 4g8a_A          435 MSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  513 (635)
T ss_dssp             TTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence            554 356677788 8999999999988898999999999999999975 4467888999999999999999999999999


Q ss_pred             ccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-cccc-CCcCcccccCCCCCccC
Q 035922          489 LRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVI-KNSSATSVMGNSKLCGG  557 (581)
Q Consensus       489 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~-~~l~~l~~~gN~~lcg~  557 (581)
                      |+++++|+.|+|++|++++..|..|..+++|++|++++|++++. .|. ...+ .+|+.++++|||+.|.+
T Consensus       514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC-CSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC-CHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999999999999999999999999999999999999997 664 3444 68999999999999964

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.9e-44  Score=385.82  Aligned_cols=443  Identities=19%  Similarity=0.173  Sum_probs=338.8

Q ss_pred             cCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCC
Q 035922           87 ISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSL  166 (581)
Q Consensus        87 i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  166 (581)
                      +|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|.+++..|.+|+.+++|++|++++|.++ .+|..  .+
T Consensus        46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l  120 (562)
T 3a79_B           46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM  120 (562)
T ss_dssp             CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred             CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence            555443  78888888888888777788888888888888888888777888888888888888888888 45555  78


Q ss_pred             CCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcc--cccccCCccC--CCCCCccccCCC-C
Q 035922          167 SKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL--SFLSLGGNML--SGTIPSSIFNRS-S  240 (581)
Q Consensus       167 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~l~-~  240 (581)
                      ++|++|++++|++++ .+|..++++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+..+. .
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~  197 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT  197 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence            888888888888886 3467888888888888888888753   34445555  8888888888  777777776654 2


Q ss_pred             ccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccccc----C
Q 035922          241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGS----I  316 (581)
Q Consensus       241 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~  316 (581)
                      ...++++.|.+.+.++......+++|+.+++++|...-      ..+.+. ...+.... .|+.++++++.+.+.    +
T Consensus       198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~------~~l~~~-~~~l~~l~-~L~~L~L~~~~l~~~~~~~~  269 (562)
T 3a79_B          198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC------QRLMTF-LSELTRGP-TLLNVTLQHIETTWKCSVKL  269 (562)
T ss_dssp             EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH------HHHHHH-HHHHHSCS-SCEEEEEEEEEECHHHHHHH
T ss_pred             eEEEEecCccchhhhhhhcccccceEEEeccccccccc------chHHHH-HHHHhccC-cceEEEecCCcCcHHHHHHH
Confidence            22557777887777776666567777777776654110      001111 12344443 788888877766543    2


Q ss_pred             chhhcCCCCCCEEEeecCcCcccccccc-----cCCCCCCeEeccCCcccccCCc-cCCC---CCCCcEEeecCcccCCC
Q 035922          317 PPGIGKLVNLRRLYVWNNKLSGTIPSAI-----GDLQNLRMLGMSGNRFSGNIPL-SVGN---LKMLIQLEVSENFLQGT  387 (581)
Q Consensus       317 p~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~-~~~~---l~~L~~L~L~~n~l~~~  387 (581)
                      +..+ ..++|++|++++|+++|.+|..+     ..++.|+.++++.+.+  .+|. .+..   ..+|++|++++|.+...
T Consensus       270 ~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~  346 (562)
T 3a79_B          270 FQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM  346 (562)
T ss_dssp             HHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred             HHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc
Confidence            2222 34589999999999988888777     6666666667766665  3342 2211   25799999999987643


Q ss_pred             CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc--cCCccccCCCCCCeeeccCCcCccccCc-c
Q 035922          388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG--SLPIEVGNLKNLGVLDISGNLLSGEIPI-S  464 (581)
Q Consensus       388 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~  464 (581)
                      .  ....+++|++|++++|++.+.+|..+..++++ +.|++++|++++  .+|..+.++++|++|++++|++++.+|. .
T Consensus       347 ~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          347 V--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             C--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred             c--CccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence            2  12678999999999999998899999999999 899999999996  3456788999999999999999975665 4


Q ss_pred             ccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC--ccccCC
Q 035922          465 LGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT--EGVIKN  542 (581)
Q Consensus       465 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~--~~~~~~  542 (581)
                      +..+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++  +|.  ...+++
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~  498 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS--VPDGVFDRLTS  498 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCTT
T ss_pred             hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCCC
Confidence            78899999999999999988776654  79999999999998 677777799999999999999995  665  567888


Q ss_pred             cCcccccCCCCCcc
Q 035922          543 SSATSVMGNSKLCG  556 (581)
Q Consensus       543 l~~l~~~gN~~lcg  556 (581)
                      |+.+++++||+.|.
T Consensus       499 L~~L~l~~N~~~c~  512 (562)
T 3a79_B          499 LQYIWLHDNPWDCT  512 (562)
T ss_dssp             CCCEECCSCCBCCC
T ss_pred             CCEEEecCCCcCCC
Confidence            99999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.9e-44  Score=386.25  Aligned_cols=428  Identities=19%  Similarity=0.173  Sum_probs=345.9

Q ss_pred             CCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcc-cC
Q 035922           81 LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG-NI  159 (581)
Q Consensus        81 ~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~  159 (581)
                      ..+.+..+..+.++++|++|+|++|.+++..|+.|.++++|++|+|++|.++ .+|..  .+++|++|++++|.+++ .+
T Consensus        62 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~  138 (562)
T 3a79_B           62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPV  138 (562)
T ss_dssp             SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCC
T ss_pred             CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCc
Confidence            3455555678999999999999999999988999999999999999999999 67766  89999999999999987 45


Q ss_pred             CcccCCCCCCCEEECCCCcccccCCccCcCCCCC--cEEEccCCCC--CCcCCCccCCCC--cccccccCCccCCCCCCc
Q 035922          160 PPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSI--IRLSLTYNNI--ARSIPDTLGYLE--NLSFLSLGGNMLSGTIPS  233 (581)
Q Consensus       160 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p~  233 (581)
                      |..++++++|++|++++|++++.   .+..+++|  ++|++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++.
T Consensus       139 p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~  214 (562)
T 3a79_B          139 CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVN  214 (562)
T ss_dssp             CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCE
T ss_pred             hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhh
Confidence            68999999999999999999864   34555555  9999999999  888888887765  33 568889998876665


Q ss_pred             c-ccCCCCccEEEcccccC-----cccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEc
Q 035922          234 S-IFNRSSITTFSVVLNRM-----QGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFL  307 (581)
Q Consensus       234 ~-l~~l~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L  307 (581)
                      . +..+++|+.+++++|..     .+.+ ..+ ..+++++.+++..+.+      .++.+.+.. +.+. . ++|++|++
T Consensus       215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l-~~l~~L~~L~L~~~~l------~~~~~~~~~-~~~~-~-~~L~~L~l  283 (562)
T 3a79_B          215 MSVNALGHLQLSNIKLNDENCQRLMTFL-SEL-TRGPTLLNVTLQHIET------TWKCSVKLF-QFFW-P-RPVEYLNI  283 (562)
T ss_dssp             EEESSEEEEEEEEEECCSTTHHHHHHHH-HHH-HSCSSCEEEEEEEEEE------CHHHHHHHH-HHHT-T-SSEEEEEE
T ss_pred             hcccccceEEEecccccccccchHHHHH-HHH-hccCcceEEEecCCcC------cHHHHHHHH-Hhhh-c-ccccEEEE
Confidence            3 55778999999998852     1111 222 2478888888766543      233333222 2222 1 38999999


Q ss_pred             cCCcccccCchhh-----cCCCCCCEEEeecCcCccccc-cccc---CCCCCCeEeccCCcccccCCccCCCCCCCcEEe
Q 035922          308 DNNKIFGSIPPGI-----GKLVNLRRLYVWNNKLSGTIP-SAIG---DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE  378 (581)
Q Consensus       308 ~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  378 (581)
                      ++|.+++.+|..+     ..++.|+.++++.+.+  .+| ..+.   ...+|++|++++|.+....  ....+++|++|+
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  359 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN  359 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred             eccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence            9999999999877     6677777777777766  334 2222   2267999999999986322  126789999999


Q ss_pred             ecCcccCCCCcccccCCCCCcEEECCCCcccc--cCCcchhcccCCcceeEcCCCcccccCCc-cccCCCCCCeeeccCC
Q 035922          379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSG--TIPPQLFGLSSLSISLDLSRNHFTGSLPI-EVGNLKNLGVLDISGN  455 (581)
Q Consensus       379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n  455 (581)
                      +++|.+++.+|..+..+++|++|++++|++.+  .+|..+..++++ +.|++++|++++.+|. .+..+++|++|++++|
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            99999999899999999999999999999985  345678899999 8999999999985665 4788999999999999


Q ss_pred             cCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchh-hhcCCCCCEEECcCCCCCCCCC
Q 035922          456 LLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF-LAGFKLLENVNLSYNDLGARYV  534 (581)
Q Consensus       456 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~i  534 (581)
                      ++++.+|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|.. +..+++|++|++++|++.+. .
T Consensus       439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~-c  513 (562)
T 3a79_B          439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT-C  513 (562)
T ss_dssp             CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCC-H
T ss_pred             CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCC-c
Confidence            99988877654  79999999999998 688777799999999999999995 5555 99999999999999999987 6


Q ss_pred             CC
Q 035922          535 PT  536 (581)
Q Consensus       535 p~  536 (581)
                      |.
T Consensus       514 ~~  515 (562)
T 3a79_B          514 PG  515 (562)
T ss_dssp             HH
T ss_pred             ch
Confidence            64

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.3e-43  Score=372.43  Aligned_cols=375  Identities=18%  Similarity=0.169  Sum_probs=269.7

Q ss_pred             CCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCC-cccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEE
Q 035922           95 SFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEI-PATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR  173 (581)
Q Consensus        95 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  173 (581)
                      ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            67788888888888777778888888888888888876544 45678888888888888888877777888888888888


Q ss_pred             CCCCcccccCCcc--CcCCCCCcEEEccCCCCCCcCCCc-cCCCCcccccccCCccCCCCCCccccCC--CCccEEEccc
Q 035922          174 SFMNNLTGSIPSS--LGNLSSIIRLSLTYNNIARSIPDT-LGYLENLSFLSLGGNMLSGTIPSSIFNR--SSITTFSVVL  248 (581)
Q Consensus       174 L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l~~  248 (581)
                      +++|++++.+|..  +..+++|++|++++|.+++..|.. +.++++|++|++++|++++..+..+..+  .+++.++++.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            8888887655544  777888888888888887776655 6777788888888887776666555443  3444444444


Q ss_pred             ccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCE
Q 035922          249 NRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRR  328 (581)
Q Consensus       249 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  328 (581)
                      |.+.+..+..+..                                                     .....+..+++|++
T Consensus       190 n~l~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~L~~  216 (455)
T 3v47_A          190 ITLQDMNEYWLGW-----------------------------------------------------EKCGNPFKNTSITT  216 (455)
T ss_dssp             CBCTTCSTTCTTH-----------------------------------------------------HHHCCTTTTCEEEE
T ss_pred             Ccccccchhhccc-----------------------------------------------------cccccccccceeee
Confidence            4433211110000                                                     00001223455666


Q ss_pred             EEeecCcCcccccccccCC---CCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccccc--CCCCCcEEEC
Q 035922          329 LYVWNNKLSGTIPSAIGDL---QNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC--QCKSLIGINF  403 (581)
Q Consensus       329 L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~l  403 (581)
                      |++++|++++..|..+...   ++|+.|++++|...+....              .+.+.+..+..+.  ..++|++|++
T Consensus       217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l  282 (455)
T 3v47_A          217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDL  282 (455)
T ss_dssp             EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred             EecCCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEe
Confidence            6666666665555544332   5666677766655432110              1111111111111  2467888888


Q ss_pred             CCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc
Q 035922          404 SKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG  483 (581)
Q Consensus       404 s~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  483 (581)
                      ++|.+.+..|..+..++++ +.|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++.+
T Consensus       283 ~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          283 SKSKIFALLKSVFSHFTDL-EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA  361 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred             cCccccccchhhcccCCCC-CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence            8888887778888888888 888888888887778888889999999999999987778888999999999999999998


Q ss_pred             cCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCcc
Q 035922          484 PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEG  538 (581)
Q Consensus       484 ~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~  538 (581)
                      ..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++++. +|...
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~  415 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CPRID  415 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-TTTTH
T ss_pred             cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC-CCcch
Confidence            8888999999999999999999987777789999999999999999988 88543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.2e-42  Score=375.70  Aligned_cols=441  Identities=23%  Similarity=0.224  Sum_probs=358.1

Q ss_pred             cccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcc
Q 035922           83 LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE  162 (581)
Q Consensus        83 ~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  162 (581)
                      +.+..+.+|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+.+|.++++|++|++++|.+++..+..
T Consensus        64 i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  143 (635)
T 4g8a_A           64 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP  143 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred             CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh
Confidence            44444457999999999999999999888889999999999999999999777788999999999999999999877778


Q ss_pred             cCCCCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccc----ccccCCccCCCCCCccccC
Q 035922          163 FGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLS----FLSLGGNMLSGTIPSSIFN  237 (581)
Q Consensus       163 l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~l~~n~l~~~~p~~l~~  237 (581)
                      |+++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..+.+++    .++++.|.++ .++.....
T Consensus       144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~  222 (635)
T 4g8a_A          144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK  222 (635)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT
T ss_pred             hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc
Confidence            9999999999999999976 4688899999999999999999988888777665544    5678888887 34444444


Q ss_pred             CCCccEEEcccccCcccCChhh---------------------------------------------------------h
Q 035922          238 RSSITTFSVVLNRMQGNIPLDF---------------------------------------------------------G  260 (581)
Q Consensus       238 l~~L~~L~l~~n~l~~~~~~~~---------------------------------------------------------~  260 (581)
                      ...+..+++..|.....++...                                                         .
T Consensus       223 ~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~  302 (635)
T 4g8a_A          223 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF  302 (635)
T ss_dssp             TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT
T ss_pred             chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh
Confidence            4445555555443221111110                                                         1


Q ss_pred             cCCCCCceeeccccCcc-----------eeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEE
Q 035922          261 FTLPNLQHFGIVFNNFT-----------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRL  329 (581)
Q Consensus       261 ~~l~~L~~L~l~~n~~~-----------~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  329 (581)
                      ..+.+++.+.+..+.+.           +.+++.+|.+.+..+..+    ..|+.+++..|.+....  ....+++|+.+
T Consensus       303 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~~n~~~~~~--~~~~l~~L~~L  376 (635)
T 4g8a_A          303 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNAF--SEVDLPSLEFL  376 (635)
T ss_dssp             GGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBC----TTCCEEEEESCCSCCBC--CCCBCTTCCEE
T ss_pred             hhhcccccccccccccccccccccchhhhhhhcccccccCcCcccc----hhhhhcccccccCCCCc--ccccccccccc
Confidence            11234444444444332           456666666655443322    37899999999876443  34578999999


Q ss_pred             EeecCcCc--ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCc-ccccCCCCCcEEECCCC
Q 035922          330 YVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIP-SSLCQCKSLIGINFSKN  406 (581)
Q Consensus       330 ~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~n  406 (581)
                      ++++|.+.  +..+..+..+.+|+++++..+.... .+..+..+++|+.+++..|......+ ..+..+++++.++++.|
T Consensus       377 ~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n  455 (635)
T 4g8a_A          377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  455 (635)
T ss_dssp             ECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred             hhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            99999886  3456667788999999999998874 55678889999999999987765544 56788999999999999


Q ss_pred             cccccCCcchhcccCCcceeEcCCCccc-ccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccC
Q 035922          407 NLSGTIPPQLFGLSSLSISLDLSRNHFT-GSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPI  485 (581)
Q Consensus       407 ~l~~~~p~~~~~l~~L~~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  485 (581)
                      .+.+..+..+..++.+ +.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus       456 ~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  534 (635)
T 4g8a_A          456 HTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  534 (635)
T ss_dssp             CCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             ccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence            9998888888889999 89999999854 457888999999999999999999989999999999999999999999988


Q ss_pred             cccccCCCCCCEEECCCCccccccchhhhcC-CCCCEEECcCCCCCCC
Q 035922          486 PSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF-KLLENVNLSYNDLGAR  532 (581)
Q Consensus       486 p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~  532 (581)
                      |..|+.+++|++||+++|++++..|+.+..+ ++|++|++++|++...
T Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999999999999999999999998 6899999999999865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.7e-42  Score=359.93  Aligned_cols=389  Identities=17%  Similarity=0.148  Sum_probs=293.2

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccC-CcccCCCCCCCEEECCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNI-PPEFGSLSKIKDLRSFM  176 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~  176 (581)
                      +.++.++++++ .+|. +  .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45677777777 4565 3  378999999999999888899999999999999999987544 56789999999999999


Q ss_pred             CcccccCCccCcCCCCCcEEEccCCCCCCcCCCc--cCCCCcccccccCCccCCCCCCcc-ccCCCCccEEEcccccCcc
Q 035922          177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT--LGYLENLSFLSLGGNMLSGTIPSS-IFNRSSITTFSVVLNRMQG  253 (581)
Q Consensus       177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~  253 (581)
                      |++++..|..++++++|++|++++|.+++..+..  +..+++|++|++++|++++..|.. +.++++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            9999888888999999999999999998755433  788888888888888888665654 5555655555555555544


Q ss_pred             cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhc-ccCCcEEEccCCcccccCchhhcCCCCCCEEEee
Q 035922          254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNF-STTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW  332 (581)
Q Consensus       254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~-~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  332 (581)
                      ..+..+..                                    + ...++.|++++|.+.+..+..++           
T Consensus       169 ~~~~~l~~------------------------------------l~~~~L~~L~l~~n~l~~~~~~~~~-----------  201 (455)
T 3v47_A          169 ICEEDLLN------------------------------------FQGKHFTLLRLSSITLQDMNEYWLG-----------  201 (455)
T ss_dssp             CCTTTSGG------------------------------------GTTCEEEEEECTTCBCTTCSTTCTT-----------
T ss_pred             cChhhhhc------------------------------------cccccccccccccCcccccchhhcc-----------
Confidence            33322211                                    0 01344444444444432211110           


Q ss_pred             cCcCcccccccccCCCCCCeEeccCCcccccCCccCCC---CCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccc
Q 035922          333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGN---LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS  409 (581)
Q Consensus       333 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  409 (581)
                           ......+..+++|++|++++|.+++..|..+..   .++|+.|++++|...+...              ..+.+.
T Consensus       202 -----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~  262 (455)
T 3v47_A          202 -----WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFK  262 (455)
T ss_dssp             -----HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSC
T ss_pred             -----ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhc
Confidence                 011122345678888888888887766665543   3778888888877654321              112222


Q ss_pred             ccCCcchhc--ccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcc
Q 035922          410 GTIPPQLFG--LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPS  487 (581)
Q Consensus       410 ~~~p~~~~~--l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  487 (581)
                      +..+..+..  .+.+ +.|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++++|.+.+..|.
T Consensus       263 ~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          263 DPDNFTFKGLEASGV-KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             CCCTTTTGGGTTSCC-CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred             cCcccccccccccCc-eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence            122222222  3567 8999999999999999999999999999999999988899999999999999999999988899


Q ss_pred             cccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccCC
Q 035922          488 SLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGGI  558 (581)
Q Consensus       488 ~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~~  558 (581)
                      .+..+++|+.|++++|++++..|..+..+++|++|++++|++++. .+. ...+++|+.+++++||..|...
T Consensus       342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC-CHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999999999999899999999999999999999975 333 4678899999999999888653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.7e-41  Score=352.01  Aligned_cols=394  Identities=22%  Similarity=0.298  Sum_probs=247.1

Q ss_pred             cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCC-------------CEEEccCCcCc
Q 035922           90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI-------------ILMDLSVNQLL  156 (581)
Q Consensus        90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~  156 (581)
                      .-.+.++|++|++++|.+ +.+|++++++++|++|++++|.+.|.+|..++++++|             ++|++++|.++
T Consensus         6 ~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~   84 (454)
T 1jl5_A            6 RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS   84 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred             cccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence            334567888888888888 6888888888889999998888888888888887764             88888888887


Q ss_pred             ccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCcccc
Q 035922          157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF  236 (581)
Q Consensus       157 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~  236 (581)
                      + +|..   .++|++|++++|.+++ +|..   +++|++|++++|.+++ ++..   .++|++|++++|++++ +| .+.
T Consensus        85 ~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~  150 (454)
T 1jl5_A           85 S-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQ  150 (454)
T ss_dssp             C-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCT
T ss_pred             c-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccC
Confidence            5 3432   3688888888888886 6653   3788888888888865 2321   1688888888888884 77 588


Q ss_pred             CCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccC
Q 035922          237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSI  316 (581)
Q Consensus       237 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~  316 (581)
                      ++++|++|++++|.+.+ +|..    .++|++|++++|.+.           + +| .+..+. +|++|++++|.+++ +
T Consensus       151 ~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~-----------~-l~-~~~~l~-~L~~L~l~~N~l~~-l  210 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLE-----------E-LP-ELQNLP-FLTAIYADNNSLKK-L  210 (454)
T ss_dssp             TCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-----------S-CC-CCTTCT-TCCEEECCSSCCSS-C
T ss_pred             CCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCC-----------c-Cc-cccCCC-CCCEEECCCCcCCc-C
Confidence            88888888888888875 4432    346777666655543           3 33 345554 88888888888875 4


Q ss_pred             chhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCC
Q 035922          317 PPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCK  396 (581)
Q Consensus       317 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  396 (581)
                      |..   .++|++|++++|+++ .+| .+..+++|++|++++|.+++ +|..   +++|+.|++++|++++ +|..   ++
T Consensus       211 ~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~  277 (454)
T 1jl5_A          211 PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQ  277 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cC
Confidence            432   258888899888888 566 37888888899998888874 4432   4788888888888885 4543   47


Q ss_pred             CCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCC-CCCCeeeccCCcCccccCccccCCCCCcEEE
Q 035922          397 SLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNL-KNLGVLDISGNLLSGEIPISLGSCTSLEKLL  475 (581)
Q Consensus       397 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  475 (581)
                      +|++|++++|++.+ +|..   .+++ +.|++++|++++ ++    .+ ++|++|++++|++++ +|..   +++|++|+
T Consensus       278 ~L~~L~ls~N~l~~-l~~~---~~~L-~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~  343 (454)
T 1jl5_A          278 SLTFLDVSENIFSG-LSEL---PPNL-YYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLI  343 (454)
T ss_dssp             TCCEEECCSSCCSE-ESCC---CTTC-CEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             cCCEEECcCCccCc-ccCc---CCcC-CEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence            88888998888875 2221   1455 788888888884 22    23 588889999988885 6653   57888899


Q ss_pred             CCCCcCcccCcccccCCCCCCEEECCCCcccc--ccchhhhcC-------------CCCCEEECcCCCCCC--CCCCCcc
Q 035922          476 MQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG--EIPKFLAGF-------------KLLENVNLSYNDLGA--RYVPTEG  538 (581)
Q Consensus       476 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~l~~l-------------~~L~~L~ls~N~l~~--~~ip~~~  538 (581)
                      +++|+++ .+|.   .+++|+.|++++|++++  .+|.++..+             ++|++|++++|++++  . +|   
T Consensus       344 L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~-iP---  415 (454)
T 1jl5_A          344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD-IP---  415 (454)
T ss_dssp             CCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred             CCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc-ch---
Confidence            9998887 4665   47888899999998888  778887777             889999999999987  4 55   


Q ss_pred             ccCCcCcccccCCCCCc
Q 035922          539 VIKNSSATSVMGNSKLC  555 (581)
Q Consensus       539 ~~~~l~~l~~~gN~~lc  555 (581)
                        .+++.+.+.+|...|
T Consensus       416 --~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          416 --ESVEDLRMNSERVVD  430 (454)
T ss_dssp             -----------------
T ss_pred             --hhHhheeCcCcccCC
Confidence              457777788776444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.2e-40  Score=331.24  Aligned_cols=188  Identities=24%  Similarity=0.472  Sum_probs=152.8

Q ss_pred             CCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc--ccCCCCcccccCccccCCCCCcEEECCCCCCCC--CCchhcc
Q 035922           41 AGNETDREALLEFKSKITVDPFGVLGSWNESSHFCK--WHESLKLAGSISPYIGNLSFLRRLHLDNNNFTH--AIPPEIG  116 (581)
Q Consensus        41 ~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c~--w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~  116 (581)
                      .|.++|++||++||+++. +|. .+.+|..+.+||.  |.|..+-.      -....++++|+|++|.+++  .+|..+.
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~------~~~~~~l~~L~L~~~~l~~~~~~~~~l~   73 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDT------DTQTYRVNNLDLSGLNLPKPYPIPSSLA   73 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECC------SSSCCCEEEEEEECCCCSSCEECCGGGG
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCC------CCCCceEEEEECCCCCccCCcccChhHh
Confidence            488999999999999994 665 7899988889998  99743321      1112578999999999998  8899999


Q ss_pred             CCCCCCEEEccC-CCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcE
Q 035922          117 RLRRLRGLTLNN-NSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR  195 (581)
Q Consensus       117 ~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  195 (581)
                      ++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            999999999995 8898899999999999999999999998888888888999999999999888888888888888888


Q ss_pred             EEccCCCCCCcCCCccCCCC-cccccccCCccCCCCCCcccc
Q 035922          196 LSLTYNNIARSIPDTLGYLE-NLSFLSLGGNMLSGTIPSSIF  236 (581)
Q Consensus       196 L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~  236 (581)
                      |++++|.+++.+|..+..++ +|++|++++|++++.+|..+.
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~  195 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence            88888888777777776665 666666666666554444433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.6e-39  Score=339.39  Aligned_cols=379  Identities=24%  Similarity=0.316  Sum_probs=272.9

Q ss_pred             cccCccccCCCCCcEEECCCCCCCCCCchhccCCCCC-------------CEEEccCCCCCCCCcccCcCCCCCCEEEcc
Q 035922           85 GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRL-------------RGLTLNNNSIGGEIPATMSRCSNIILMDLS  151 (581)
Q Consensus        85 g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  151 (581)
                      |.+|+.++++++|++|++++|.+.+.+|..++++++|             ++|++++|.+++ +|..   .++|++|+++
T Consensus        24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~   99 (454)
T 1jl5_A           24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVAS   99 (454)
T ss_dssp             ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECC
T ss_pred             hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEcc
Confidence            7899999999999999999999999999999998865             999999999985 4542   4789999999


Q ss_pred             CCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCC
Q 035922          152 VNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTI  231 (581)
Q Consensus       152 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  231 (581)
                      +|.+++ +|..   +++|++|++++|++++ +|..   .++|++|++++|++++ +| .++++++|++|++++|++++ +
T Consensus       100 ~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l  168 (454)
T 1jl5_A          100 CNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-L  168 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-C
T ss_pred             CCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-c
Confidence            999997 6643   4789999999999984 4432   2799999999999987 67 59999999999999999994 6


Q ss_pred             CccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCc
Q 035922          232 PSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK  311 (581)
Q Consensus       232 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~  311 (581)
                      |...   .+|++|++++|.+.+ +| .+. .+++|+.|++++|.+..            +|..    .++|++|++++|.
T Consensus       169 p~~~---~~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~------------l~~~----~~~L~~L~l~~n~  226 (454)
T 1jl5_A          169 PDLP---PSLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKK------------LPDL----PLSLESIVAGNNI  226 (454)
T ss_dssp             CCCC---TTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSS------------CCCC----CTTCCEEECCSSC
T ss_pred             CCCc---ccccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCc------------CCCC----cCcccEEECcCCc
Confidence            7654   589999999999987 55 343 48999888887776542            2222    1389999999999


Q ss_pred             ccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccc
Q 035922          312 IFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS  391 (581)
Q Consensus       312 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  391 (581)
                      ++ .+|. ++.+++|++|++++|++++ +|.   .+++|++|++++|.+++ +|..   .++|++|++++|++++. |. 
T Consensus       227 l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-  294 (454)
T 1jl5_A          227 LE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-  294 (454)
T ss_dssp             CS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-
T ss_pred             CC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-
Confidence            98 6774 8899999999999999985 554   24799999999999985 5543   47899999999999862 22 


Q ss_pred             ccCCCCCcEEECCCCcccccCCcchhcc-cCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCC
Q 035922          392 LCQCKSLIGINFSKNNLSGTIPPQLFGL-SSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTS  470 (581)
Q Consensus       392 l~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  470 (581)
                        -.++|++|++++|++.+ ++    .+ +++ +.|++++|++++ +|..   +++|++|++++|+++ .+|.   .+++
T Consensus       295 --~~~~L~~L~l~~N~l~~-i~----~~~~~L-~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~  358 (454)
T 1jl5_A          295 --LPPNLYYLNASSNEIRS-LC----DLPPSL-EELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQN  358 (454)
T ss_dssp             --CCTTCCEEECCSSCCSE-EC----CCCTTC-CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred             --cCCcCCEEECcCCcCCc-cc----CCcCcC-CEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhh
Confidence              13689999999999984 33    23 356 899999999995 6654   589999999999999 5776   4789


Q ss_pred             CcEEECCCCcCcc--cCcccccCC-------------CCCCEEECCCCcccc--ccchhhhcCCCCCEEECcCCCCCCCC
Q 035922          471 LEKLLMQGNKFYG--PIPSSLRSL-------------RGLSVWDFAQNNLSG--EIPKFLAGFKLLENVNLSYNDLGARY  533 (581)
Q Consensus       471 L~~L~Ls~n~l~~--~~p~~l~~l-------------~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~  533 (581)
                      |++|++++|++.+  .+|.++..+             ++|+.||+++|.+++  .+|.      +++.|.+.+|.+.+. 
T Consensus       359 L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~-  431 (454)
T 1jl5_A          359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP-  431 (454)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------------------
T ss_pred             ccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc-
Confidence            9999999999998  788888887             899999999999997  6664      466778899998876 


Q ss_pred             CC
Q 035922          534 VP  535 (581)
Q Consensus       534 ip  535 (581)
                      +|
T Consensus       432 ~~  433 (454)
T 1jl5_A          432 YE  433 (454)
T ss_dssp             --
T ss_pred             cc
Confidence            55

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2e-38  Score=333.04  Aligned_cols=358  Identities=19%  Similarity=0.194  Sum_probs=254.7

Q ss_pred             CccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCC
Q 035922           88 SPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLS  167 (581)
Q Consensus        88 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  167 (581)
                      +..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++.++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~  106 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT  106 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred             ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence            34567889999999999999964 5 689999999999999999964 4  89999999999999999874 3  89999


Q ss_pred             CCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcc
Q 035922          168 KIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVV  247 (581)
Q Consensus       168 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~  247 (581)
                      +|++|++++|++++ +|  ++.+++|++|++++|.+++.   .++.+++|++|++++|+..+.+  .+..+++|++|+++
T Consensus       107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS  178 (457)
T ss_dssp             TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence            99999999999996 44  89999999999999999874   3888999999999999766566  46778888999988


Q ss_pred             cccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCC
Q 035922          248 LNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLR  327 (581)
Q Consensus       248 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  327 (581)
                      +|.+++ +|  +. .+++|+.|++++|.++..              .+..+ ++|++|++++|++++ +|  +..+++|+
T Consensus       179 ~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~--------------~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~  236 (457)
T 3bz5_A          179 FNKITE-LD--VS-QNKLLNRLNCDTNNITKL--------------DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLT  236 (457)
T ss_dssp             SSCCCC-CC--CT-TCTTCCEEECCSSCCSCC--------------CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             CCccce-ec--cc-cCCCCCEEECcCCcCCee--------------ccccC-CCCCEEECcCCcccc-cC--ccccCCCC
Confidence            888876 33  22 356666665555544321              12222 266666666666665 34  55666666


Q ss_pred             EEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCc
Q 035922          328 RLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN  407 (581)
Q Consensus       328 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~  407 (581)
                      +|++++|++++..   +..+++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|++|++++|.
T Consensus       237 ~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          237 YFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT  297 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred             EEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence            6666666666432   334555555555443              34556666666666655  3566777777777777


Q ss_pred             ccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcc
Q 035922          408 LSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPS  487 (581)
Q Consensus       408 l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  487 (581)
                      ..+.+|..   ...+ +.|++++             +++|++|++++|++++ ++  ++.+++|+.|++++|++.+    
T Consensus       298 ~l~~l~~~---~~~L-~~L~l~~-------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~----  353 (457)
T 3bz5_A          298 QLYLLDCQ---AAGI-TELDLSQ-------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD----  353 (457)
T ss_dssp             TCCEEECT---TCCC-SCCCCTT-------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB----
T ss_pred             ccceeccC---CCcc-eEechhh-------------cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC----
Confidence            66665542   2233 3343333             3577788888888876 33  7777888888888887774    


Q ss_pred             cccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922          488 SLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT  536 (581)
Q Consensus       488 ~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~  536 (581)
                          ++.|+.|++++|.+.|.     ..+..|+.+++++|+++|. ||.
T Consensus       354 ----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~-ip~  392 (457)
T 3bz5_A          354 ----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIA-VSP  392 (457)
T ss_dssp             ----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEE-CCT
T ss_pred             ----ccccccccccCCcEEec-----ceeeecCccccccCcEEEE-cCh
Confidence                23455567777777765     2345567778888888877 774

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=336.14  Aligned_cols=319  Identities=20%  Similarity=0.203  Sum_probs=200.5

Q ss_pred             CEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCC
Q 035922          122 RGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN  201 (581)
Q Consensus       122 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  201 (581)
                      +.++.+++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            56777777776 5565543  56777777777777766777777777777777777777666777777777777777777


Q ss_pred             CCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEe
Q 035922          202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLL  281 (581)
Q Consensus       202 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~  281 (581)
                      .+++..+..|.++++|++|++++|++++..+..+..+                                           
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-------------------------------------------  127 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-------------------------------------------  127 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-------------------------------------------
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHcccc-------------------------------------------
Confidence            7765555556666666666666666553333222211                                           


Q ss_pred             ccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCccc
Q 035922          282 LNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS  361 (581)
Q Consensus       282 l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  361 (581)
                                        ++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus       128 ------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          128 ------------------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ------------------TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ------------------ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence                              25666666666666666666777777777777777777655566777777777777777777


Q ss_pred             ccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeEcCCCcccccCCcc
Q 035922          362 GNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLDLSRNHFTGSLPIE  440 (581)
Q Consensus       362 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~  440 (581)
                      +..+..|..+++|+.|++++|...+.+|.......+|++|++++|++. .+| ..+..++.| +.|++++|.+++..+..
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL-RFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTC-CEEECCSSCCCEECTTS
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcccc-CeeECCCCcCCccChhh
Confidence            666666777777777777776666555555555556666666666655 333 344455555 55555555555444444


Q ss_pred             ccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922          441 VGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      +..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            555555555555555555555555555555555555555555444444555555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-37  Score=328.33  Aligned_cols=345  Identities=25%  Similarity=0.372  Sum_probs=198.2

Q ss_pred             CCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEE
Q 035922           93 NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDL  172 (581)
Q Consensus        93 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (581)
                      .++++++|+++++.+.. +| .+..+++|++|++++|.+++..+  ++++++|++|++++|.+.+..+  ++++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            46788999999999874 55 47889999999999999985544  8999999999999999986554  8899999999


Q ss_pred             ECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCc
Q 035922          173 RSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQ  252 (581)
Q Consensus       173 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  252 (581)
                      ++++|.+++. +. +.++++|++|++++|.+++. + .+..+++|++|+++ |.+.+. + .+.++++|+.|++++|.+.
T Consensus       118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCC
Confidence            9999998854 33 88889999999999888653 3 47778888888875 444422 1 1445555555555544433


Q ss_pred             ccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEee
Q 035922          253 GNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW  332 (581)
Q Consensus       253 ~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  332 (581)
                      +. +                                     .+..+ ++|++|++++|.+.+..|  ++.+++|++|+++
T Consensus       191 ~~-~-------------------------------------~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  229 (466)
T 1o6v_A          191 DI-S-------------------------------------VLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLN  229 (466)
T ss_dssp             CC-G-------------------------------------GGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred             CC-h-------------------------------------hhccC-CCCCEEEecCCccccccc--ccccCCCCEEECC
Confidence            21 0                                     11111 245555555555554332  4445555555555


Q ss_pred             cCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccC
Q 035922          333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTI  412 (581)
Q Consensus       333 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~  412 (581)
                      +|++++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|++.+..
T Consensus       230 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  303 (466)
T 1o6v_A          230 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS  303 (466)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred             CCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence            5555432  234455555555555555543322  4445555555555555543322  444455555555555444221


Q ss_pred             CcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCC
Q 035922          413 PPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSL  492 (581)
Q Consensus       413 p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  492 (581)
                      +  +..++++ +.|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++.+..|  +..+
T Consensus       304 ~--~~~l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l  374 (466)
T 1o6v_A          304 P--ISNLKNL-TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL  374 (466)
T ss_dssp             G--GGGCTTC-SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred             h--hcCCCCC-CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcC
Confidence            1  3344444 444444444443322  33444444444444444422  233444444444444444443333  3444


Q ss_pred             CCCCEEECCCCccc
Q 035922          493 RGLSVWDFAQNNLS  506 (581)
Q Consensus       493 ~~L~~L~ls~n~l~  506 (581)
                      ++|+.|++++|.++
T Consensus       375 ~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          375 TRITQLGLNDQAWT  388 (466)
T ss_dssp             TTCCEEECCCEEEE
T ss_pred             CCCCEEeccCCccc
Confidence            44444444444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-37  Score=327.87  Aligned_cols=348  Identities=29%  Similarity=0.402  Sum_probs=292.2

Q ss_pred             cCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcE
Q 035922          116 GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR  195 (581)
Q Consensus       116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  195 (581)
                      ..+++++.|+++++.+. .+| .+..+++|++|++++|.+++..+  ++++++|++|++++|.+.+..+  ++++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            34678999999999998 455 48889999999999999986544  8999999999999999986544  899999999


Q ss_pred             EEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccC
Q 035922          196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN  275 (581)
Q Consensus       196 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  275 (581)
                      |++++|.+++..+  +.++++|++|++++|.+++ ++ .+..+++|+.+++. +.+.+.                     
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~---------------------  170 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL---------------------  170 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC---------------------
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc---------------------
Confidence            9999999976543  8889999999999998874 33 36667777777764 222211                     


Q ss_pred             cceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEec
Q 035922          276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM  355 (581)
Q Consensus       276 ~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  355 (581)
                                      + .+..+ ++|++|++++|.+.+.  ..+..+++|++|++++|++++..+  ++.+++|++|++
T Consensus       171 ----------------~-~~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  228 (466)
T 1o6v_A          171 ----------------K-PLANL-TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL  228 (466)
T ss_dssp             ----------------G-GGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred             ----------------h-hhccC-CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEEC
Confidence                            0 12333 3899999999998754  348899999999999999997655  778999999999


Q ss_pred             cCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc
Q 035922          356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG  435 (581)
Q Consensus       356 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~  435 (581)
                      ++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+. +. +..++.+ +.|++++|++++
T Consensus       229 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L-~~L~L~~n~l~~  301 (466)
T 1o6v_A          229 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTAL-TNLELNENQLED  301 (466)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTC-SEEECCSSCCSC
T ss_pred             CCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCcc-CeEEcCCCcccC
Confidence            99999853  467889999999999999997654  88999999999999999854 43 7889999 899999999996


Q ss_pred             cCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhc
Q 035922          436 SLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAG  515 (581)
Q Consensus       436 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~  515 (581)
                      ..+  +..+++|++|++++|++++..|  +..+++|++|++++|++.+.  ..+..+++|+.|++++|++++..|  +..
T Consensus       302 ~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  373 (466)
T 1o6v_A          302 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN  373 (466)
T ss_dssp             CGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             chh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhc
Confidence            544  7899999999999999997665  78999999999999999865  468999999999999999998877  899


Q ss_pred             CCCCCEEECcCCCCCCC
Q 035922          516 FKLLENVNLSYNDLGAR  532 (581)
Q Consensus       516 l~~L~~L~ls~N~l~~~  532 (581)
                      +++|++|++++|++++.
T Consensus       374 l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          374 LTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CTTCCEEECCCEEEECC
T ss_pred             CCCCCEEeccCCcccCC
Confidence            99999999999999983

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.3e-37  Score=322.80  Aligned_cols=356  Identities=17%  Similarity=0.190  Sum_probs=252.5

Q ss_pred             CCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCc
Q 035922          106 NFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPS  185 (581)
Q Consensus       106 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  185 (581)
                      ...+..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|++++. + 
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-  101 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-  101 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence            34445566788999999999999999964 5 689999999999999999974 4  89999999999999999964 4 


Q ss_pred             cCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCC
Q 035922          186 SLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN  265 (581)
Q Consensus       186 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  265 (581)
                       ++++++|++|++++|.+++. +  ++.+++|++|++++|++++ ++  +..+++|++|++++|...+.++  +. .++ 
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~~-~l~-  170 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--VT-PQT-  170 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--CT-TCT-
T ss_pred             -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--cc-cCC-
Confidence             88999999999999999874 3  8899999999999999986 33  6777888888888876554442  11 133 


Q ss_pred             CceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccccccccc
Q 035922          266 LQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIG  345 (581)
Q Consensus       266 L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~  345 (581)
                                                         +|++|++++|++++ +|  +..+++|++|++++|++++.   .+.
T Consensus       171 -----------------------------------~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~  209 (457)
T 3bz5_A          171 -----------------------------------QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLN  209 (457)
T ss_dssp             -----------------------------------TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCT
T ss_pred             -----------------------------------cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccc
Confidence                                               55566666666554 23  55566666666666666643   255


Q ss_pred             CCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcce
Q 035922          346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS  425 (581)
Q Consensus       346 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~  425 (581)
                      .+++|++|++++|++++ +|  +..+++|+.|++++|++++..   +..+++|++|++++|.+               +.
T Consensus       210 ~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L---------------~~  268 (457)
T 3bz5_A          210 QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDL---------------LE  268 (457)
T ss_dssp             TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCC---------------SC
T ss_pred             cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCC---------------CE
Confidence            66666666666666664 33  556666666666666666532   33455555555554432               34


Q ss_pred             eEcCCCcccccCCccccCCCCCCeeeccCCcCccccCc--------cccCCCCCcEEECCCCcCcccCcccccCCCCCCE
Q 035922          426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPI--------SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSV  497 (581)
Q Consensus       426 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  497 (581)
                      |++++|.+.+.+|  ++.+++|+.|++++|...+.+|.        .+..+++|++|++++|++++. +  ++.+++|+.
T Consensus       269 L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~  343 (457)
T 3bz5_A          269 IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS  343 (457)
T ss_dssp             CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE
T ss_pred             EECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcE
Confidence            5555555554444  34455555555555554444432        134457889999999999874 3  888999999


Q ss_pred             EECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCCC
Q 035922          498 WDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPK  560 (581)
Q Consensus       498 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~~  560 (581)
                      |++++|++++        ++.|+.|++++|.+.|.     +.+..+..++++.|. +.|.+|.
T Consensus       344 L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~-l~g~ip~  392 (457)
T 3bz5_A          344 LSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNS-LTIAVSP  392 (457)
T ss_dssp             EECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTB-EEEECCT
T ss_pred             EECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCc-EEEEcCh
Confidence            9999999886        24566778899998875     355678888999886 8887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=322.76  Aligned_cols=320  Identities=20%  Similarity=0.182  Sum_probs=179.2

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN  177 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  177 (581)
                      +.++.++++++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            34555665555 3444332  46677777777776666666777777777777777776666666777777777777777


Q ss_pred             cccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCCh
Q 035922          178 NLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPL  257 (581)
Q Consensus       178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~  257 (581)
                      ++++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.       
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------  163 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-------  163 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-------
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-------
Confidence            7664444456677777777777777766666667777777777777777665444444444444444443333       


Q ss_pred             hhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc
Q 035922          258 DFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS  337 (581)
Q Consensus       258 ~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  337 (581)
                                                                            +++..+..+..+++|+.|++++|.+.
T Consensus       164 ------------------------------------------------------l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          164 ------------------------------------------------------LTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ------------------------------------------------------CSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ------------------------------------------------------CcccChhHhcccCCCcEEeCCCCcCc
Confidence                                                                  33222233444444444444444444


Q ss_pred             ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchh
Q 035922          338 GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF  417 (581)
Q Consensus       338 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~  417 (581)
                      +..+..+..+++|++|++++|...+.++.......+|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            44444444444455555544444444444333334555555555555533333445555555555555555544444455


Q ss_pred             cccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCc
Q 035922          418 GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY  482 (581)
Q Consensus       418 ~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  482 (581)
                      .+++| +.|++++|++++..|..+..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus       270 ~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          270 ELLRL-QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TCTTC-CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccccC-CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            55555 55555555555555555555555555555555555444444555555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.3e-37  Score=334.90  Aligned_cols=337  Identities=20%  Similarity=0.179  Sum_probs=184.2

Q ss_pred             CCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEE
Q 035922           94 LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR  173 (581)
Q Consensus        94 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  173 (581)
                      +++++.++++++.+....+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34555555555555544444455555555555555555555455555555555555555555555554555555555555


Q ss_pred             CCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcc
Q 035922          174 SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG  253 (581)
Q Consensus       174 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  253 (581)
                      +++|.+++..+..++++++|++|++++|.+++..|..|+.+++|++|++++|.+++                        
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------  185 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------------------------  185 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB------------------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC------------------------
Confidence            55555553333334455555555555555544444444444444444444444331                        


Q ss_pred             cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeec
Q 035922          254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN  333 (581)
Q Consensus       254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  333 (581)
                                                                                   . +  ++.+++|+.|++++
T Consensus       186 -------------------------------------------------------------~-~--~~~l~~L~~L~l~~  201 (597)
T 3oja_B          186 -------------------------------------------------------------V-D--LSLIPSLFHANVSY  201 (597)
T ss_dssp             -------------------------------------------------------------C-C--GGGCTTCSEEECCS
T ss_pred             -------------------------------------------------------------c-C--hhhhhhhhhhhccc
Confidence                                                                         1 0  12233344444444


Q ss_pred             CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC
Q 035922          334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP  413 (581)
Q Consensus       334 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  413 (581)
                      |.+++     +...++|+.|++++|.+....+ .+  .++|+.|++++|.+++                          +
T Consensus       202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--------------------------~  247 (597)
T 3oja_B          202 NLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--------------------------T  247 (597)
T ss_dssp             SCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--------------------------C
T ss_pred             Ccccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--------------------------C
Confidence            44432     1122345555555554442211 11  1344444444444443                          1


Q ss_pred             cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCC
Q 035922          414 PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLR  493 (581)
Q Consensus       414 ~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  493 (581)
                      ..+..++.| +.|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.+. .+|..+..++
T Consensus       248 ~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~  324 (597)
T 3oja_B          248 AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD  324 (597)
T ss_dssp             GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred             hhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCC
Confidence            334444445 455555555555555566666666666666666663 4555566777777777777776 5666667777


Q ss_pred             CCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCCC
Q 035922          494 GLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPK  560 (581)
Q Consensus       494 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~~  560 (581)
                      +|+.|++++|.+.+. |  +..+++|++|++++|++.+. . ....+..+....+.+++..|+..+.
T Consensus       325 ~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~-~-~~~~~~~~~~~~~~~~~~~C~~~~~  386 (597)
T 3oja_B          325 RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN-S-LRALFRNVARPAVDDADQHCKIDYQ  386 (597)
T ss_dssp             TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH-H-HHHHTTTCCTTTBCCCCCCCCTTCE
T ss_pred             CCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh-h-HHHHHHHHhhhccccccccCCcchh
Confidence            777777777777644 2  56677788888888887764 2 2345666777778888889986543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-36  Score=314.22  Aligned_cols=334  Identities=20%  Similarity=0.183  Sum_probs=179.3

Q ss_pred             CCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEE
Q 035922           94 LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR  173 (581)
Q Consensus        94 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  173 (581)
                      ++++++|+++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45555555555555543333345555555555555555544444555555555555555555554444455555555555


Q ss_pred             CCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcc
Q 035922          174 SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG  253 (581)
Q Consensus       174 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  253 (581)
                      +++|+++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|+++                         
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------  178 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------------------------  178 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-------------------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-------------------------
Confidence            5555555222222344555555555555544444444444444444444444333                         


Q ss_pred             cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeec
Q 035922          254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN  333 (581)
Q Consensus       254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  333 (581)
                                                                                  +.   .+..+++|++|++++
T Consensus       179 ------------------------------------------------------------~~---~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          179 ------------------------------------------------------------HV---DLSLIPSLFHANVSY  195 (390)
T ss_dssp             ------------------------------------------------------------BC---CGGGCTTCSEEECCS
T ss_pred             ------------------------------------------------------------cc---ccccccccceeeccc
Confidence                                                                        11   022233444444444


Q ss_pred             CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC
Q 035922          334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP  413 (581)
Q Consensus       334 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  413 (581)
                      |.+++     +...++|++|++++|.+... |..  ..++|+.|++++|.+++.                          
T Consensus       196 n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--------------------------  241 (390)
T 3o6n_A          196 NLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--------------------------  241 (390)
T ss_dssp             SCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--------------------------
T ss_pred             ccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--------------------------
Confidence            44432     11223455555555554422 111  123444455544444432                          


Q ss_pred             cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCC
Q 035922          414 PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLR  493 (581)
Q Consensus       414 ~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  493 (581)
                      ..+..++.+ +.|++++|.+++..|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++. .+|..+..++
T Consensus       242 ~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~  318 (390)
T 3o6n_A          242 AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD  318 (390)
T ss_dssp             GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred             HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence            233444444 45555555555555555666666666666666666 34555566677777777777776 4555666777


Q ss_pred             CCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922          494 GLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       494 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      +|+.|++++|.++.. |  +..+++|++|++++|++.+.  .....+..+....+.+++..|+.
T Consensus       319 ~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~--~~~~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          319 RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH--HHHHHTTTCCTTTBCCCCSCCCT
T ss_pred             cCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch--hHHHHHHHHHhhcccccCceecc
Confidence            777777777777643 2  56677788888888887753  22345667777778888888874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.8e-37  Score=308.69  Aligned_cols=254  Identities=31%  Similarity=0.519  Sum_probs=242.6

Q ss_pred             CCcEEEccCCcccc--cCchhhcCCCCCCEEEeec-CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEE
Q 035922          301 TLASLFLDNNKIFG--SIPPGIGKLVNLRRLYVWN-NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL  377 (581)
Q Consensus       301 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  377 (581)
                      ++++|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            79999999999998  8999999999999999995 99999999999999999999999999999999999999999999


Q ss_pred             eecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhccc-CCcceeEcCCCcccccCCccccCCCCCCeeeccCCc
Q 035922          378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLS-SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL  456 (581)
Q Consensus       378 ~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  456 (581)
                      ++++|.+++.+|..+..+++|++|++++|++.+.+|..+..++ .+ +.|++++|++++.+|..+..++ |++|++++|+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            9999999999999999999999999999999999999999998 77 8999999999999999999987 9999999999


Q ss_pred             CccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922          457 LSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT  536 (581)
Q Consensus       457 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~  536 (581)
                      +++..|..+..+++|+.|++++|++.+.+|. +..+++|+.|++++|.+++.+|..+..+++|++|++++|+++|. +|.
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~  286 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQ  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-CCC
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc-CCC
Confidence            9999999999999999999999999977776 88999999999999999999999999999999999999999998 999


Q ss_pred             ccccCCcCcccccCCCCCccCC
Q 035922          537 EGVIKNSSATSVMGNSKLCGGI  558 (581)
Q Consensus       537 ~~~~~~l~~l~~~gN~~lcg~~  558 (581)
                      .+.+++|+.+++.|||++||.+
T Consensus       287 ~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          287 GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEESTT
T ss_pred             CccccccChHHhcCCCCccCCC
Confidence            8899999999999999999964

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-34  Score=297.37  Aligned_cols=313  Identities=19%  Similarity=0.173  Sum_probs=213.6

Q ss_pred             CCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEE
Q 035922          117 RLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRL  196 (581)
Q Consensus       117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  196 (581)
                      .++++++|++++|.++...+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..++++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            35667777777777664333345666666666666666665555555556666666655555554444444445555555


Q ss_pred             EccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCc
Q 035922          197 SLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNF  276 (581)
Q Consensus       197 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  276 (581)
                      ++++|.++...+..|.+++                                                             
T Consensus       123 ~L~~n~l~~l~~~~~~~l~-------------------------------------------------------------  141 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTP-------------------------------------------------------------  141 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCT-------------------------------------------------------------
T ss_pred             ECCCCccCcCCHHHhcCCC-------------------------------------------------------------
Confidence            5544444322111122222                                                             


Q ss_pred             ceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEecc
Q 035922          277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS  356 (581)
Q Consensus       277 ~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  356 (581)
                                              +|++|++++|.+.+..+..+..+++|++|++++|++++.   .+..+++|+.|+++
T Consensus       142 ------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~  194 (390)
T 3o6n_A          142 ------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVS  194 (390)
T ss_dssp             ------------------------TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECC
T ss_pred             ------------------------CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecc
Confidence                                    344444444444444445566677777777777777643   23455666666666


Q ss_pred             CCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCccccc
Q 035922          357 GNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS  436 (581)
Q Consensus       357 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~  436 (581)
                      +|.+++.                             ...++|++|++++|.+. .+|...  .+++ +.|++++|.+++.
T Consensus       195 ~n~l~~~-----------------------------~~~~~L~~L~l~~n~l~-~~~~~~--~~~L-~~L~l~~n~l~~~  241 (390)
T 3o6n_A          195 YNLLSTL-----------------------------AIPIAVEELDASHNSIN-VVRGPV--NVEL-TILKLQHNNLTDT  241 (390)
T ss_dssp             SSCCSEE-----------------------------ECCSSCSEEECCSSCCC-EEECCC--CSSC-CEEECCSSCCCCC
T ss_pred             ccccccc-----------------------------CCCCcceEEECCCCeee-eccccc--cccc-cEEECCCCCCccc
Confidence            6655421                             12234566666666655 223222  3566 8899999999853


Q ss_pred             CCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcC
Q 035922          437 LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF  516 (581)
Q Consensus       437 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l  516 (581)
                        ..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+ +|..+..+++|+.|++++|++. .+|..+..+
T Consensus       242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l  317 (390)
T 3o6n_A          242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  317 (390)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence              578899999999999999998889999999999999999999985 5777788999999999999998 567778999


Q ss_pred             CCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922          517 KLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       517 ~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      ++|++|++++|+++..  | ...+++|+.++++|||+-|..
T Consensus       318 ~~L~~L~L~~N~i~~~--~-~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          318 DRLENLYLDHNSIVTL--K-LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             TTCSEEECCSSCCCCC--C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             CcCCEEECCCCcccee--C-chhhccCCEEEcCCCCccchh
Confidence            9999999999999874  4 567899999999999998853

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.6e-34  Score=288.48  Aligned_cols=307  Identities=22%  Similarity=0.338  Sum_probs=170.1

Q ss_pred             ccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCC
Q 035922           91 IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIK  170 (581)
Q Consensus        91 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  170 (581)
                      +..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++. ++ .+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence            3456677777777777763 33 366677777777777776633 32 6666666666666666553 22 355555555


Q ss_pred             EEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEccccc
Q 035922          171 DLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNR  250 (581)
Q Consensus       171 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  250 (581)
                      +|++++|.+.+ ++. +..+++|++|++++|.....++ .+..+                                    
T Consensus       114 ~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l------------------------------------  154 (347)
T 4fmz_A          114 ELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNM------------------------------------  154 (347)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTC------------------------------------
T ss_pred             EEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhC------------------------------------
Confidence            55555555442 111 3333344444333332211111 01111                                    


Q ss_pred             CcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEE
Q 035922          251 MQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY  330 (581)
Q Consensus       251 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  330 (581)
                                                                       ++|++|++++|.+.+..+  +..+++|++|+
T Consensus       155 -------------------------------------------------~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          155 -------------------------------------------------TGLNYLTVTESKVKDVTP--IANLTDLYSLS  183 (347)
T ss_dssp             -------------------------------------------------TTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred             -------------------------------------------------CCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence                                                             134444444444432221  55566677777


Q ss_pred             eecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccc
Q 035922          331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG  410 (581)
Q Consensus       331 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  410 (581)
                      +++|++.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+           
T Consensus       184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~-----------  246 (347)
T 4fmz_A          184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT-----------  246 (347)
T ss_dssp             CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC-----------
T ss_pred             ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC-----------
Confidence            77776663322  5566666666666666553322  4445555555555555543222  44444444           


Q ss_pred             cCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCccccc
Q 035922          411 TIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLR  490 (581)
Q Consensus       411 ~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  490 (581)
                                    .|++++|.+++ + ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++.+..|+.+.
T Consensus       247 --------------~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          247 --------------WLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             --------------EEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             --------------EEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence                          44444444442 2 2355566677777777776642  3466777777777777777777777777


Q ss_pred             CCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922          491 SLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG  530 (581)
Q Consensus       491 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  530 (581)
                      .+++|+.|++++|.+++..|  +..+++|++|++++|+++
T Consensus       309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            77777777777777776555  677777777777777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-33  Score=307.60  Aligned_cols=311  Identities=19%  Similarity=0.194  Sum_probs=234.7

Q ss_pred             CCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccc
Q 035922          142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLS  221 (581)
Q Consensus       142 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  221 (581)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            57889999999999876666678899999999999999877777888888889998888888887777777777777777


Q ss_pred             cCCccCCCCCCcc-ccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhccc
Q 035922          222 LGGNMLSGTIPSS-IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFST  300 (581)
Q Consensus       222 l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~  300 (581)
                      +++|.++ .+|.. +.++                                                             +
T Consensus       130 L~~n~l~-~l~~~~~~~l-------------------------------------------------------------~  147 (597)
T 3oja_B          130 LERNDLS-SLPRGIFHNT-------------------------------------------------------------P  147 (597)
T ss_dssp             CCSSCCC-CCCTTTTTTC-------------------------------------------------------------T
T ss_pred             eeCCCCC-CCCHHHhccC-------------------------------------------------------------C
Confidence            7777766 22221 1111                                                             2


Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++..   +..+++|+.|++++|                      
T Consensus       148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n----------------------  202 (597)
T 3oja_B          148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN----------------------  202 (597)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS----------------------
T ss_pred             CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC----------------------
Confidence            4555555555555555555566666666666666555321   233444555555544                      


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                        .+++     +...++|++|++++|.+. .++..+  .+.+ +.|++++|.+++  +..+..+++|++|+|++|.+++.
T Consensus       203 --~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~~--~~~L-~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~  269 (597)
T 3oja_B          203 --LLST-----LAIPIAVEELDASHNSIN-VVRGPV--NVEL-TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI  269 (597)
T ss_dssp             --CCSE-----EECCTTCSEEECCSSCCC-EEECSC--CSCC-CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred             --cccc-----ccCCchhheeeccCCccc-cccccc--CCCC-CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence              4432     123345666667666665 233222  2456 899999999996  46789999999999999999999


Q ss_pred             cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCcccc
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVI  540 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~  540 (581)
                      .|..|..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++.  | ...+
T Consensus       270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~--~-~~~~  344 (597)
T 3oja_B          270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--K-LSTH  344 (597)
T ss_dssp             ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC--C-CCTT
T ss_pred             CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc--C-hhhc
Confidence            99999999999999999999986 6777788999999999999998 6788889999999999999999874  4 5578


Q ss_pred             CCcCcccccCCCCCccC
Q 035922          541 KNSSATSVMGNSKLCGG  557 (581)
Q Consensus       541 ~~l~~l~~~gN~~lcg~  557 (581)
                      ++|+.++++|||+-|..
T Consensus       345 ~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          345 HTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCCSEEECCSSCEEHHH
T ss_pred             CCCCEEEeeCCCCCChh
Confidence            89999999999998853

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.1e-33  Score=282.39  Aligned_cols=284  Identities=25%  Similarity=0.346  Sum_probs=177.7

Q ss_pred             cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922           90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI  169 (581)
Q Consensus        90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (581)
                      .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+..+  +..+++|
T Consensus        61 ~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L  134 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTKM  134 (347)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTC
T ss_pred             hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCce
Confidence            478899999999999999854 44 9999999999999999985 44 69999999999999999985433  8999999


Q ss_pred             CEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccc
Q 035922          170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN  249 (581)
Q Consensus       170 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  249 (581)
                      ++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++. +..++          
T Consensus       135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~----------  199 (347)
T 4fmz_A          135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLT----------  199 (347)
T ss_dssp             CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCT----------
T ss_pred             eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCC----------
Confidence            999999997665544 48999999999999999876543  6677777777777776652 211 22222          


Q ss_pred             cCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEE
Q 035922          250 RMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRL  329 (581)
Q Consensus       250 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  329 (581)
                                                                         +|+.|++++|.+.+..+  +..+++|++|
T Consensus       200 ---------------------------------------------------~L~~L~l~~n~l~~~~~--~~~~~~L~~L  226 (347)
T 4fmz_A          200 ---------------------------------------------------SLHYFTAYVNQITDITP--VANMTRLNSL  226 (347)
T ss_dssp             ---------------------------------------------------TCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             ---------------------------------------------------ccceeecccCCCCCCch--hhcCCcCCEE
Confidence                                                               44455555554443322  4555566666


Q ss_pred             EeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccc
Q 035922          330 YVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS  409 (581)
Q Consensus       330 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  409 (581)
                      ++++|++++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.
T Consensus       227 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             EccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence            666666553322  55555566666655555432  2344445555555555544432  22344444444444444444


Q ss_pred             ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCc
Q 035922          410 GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL  456 (581)
Q Consensus       410 ~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  456 (581)
                      +..+..+..++++ +.|++++|++++..|  +..+++|++|++++|.
T Consensus       301 ~~~~~~l~~l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          301 NEDMEVIGGLTNL-TTLFLSQNHITDIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGHHHHHTCTTC-SEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred             CcChhHhhccccC-CEEEccCCccccccC--hhhhhccceeehhhhc
Confidence            3333334444444 344444444432222  3333444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=2.2e-34  Score=289.39  Aligned_cols=190  Identities=17%  Similarity=0.241  Sum_probs=137.2

Q ss_pred             ccCCCHhHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCccccCCCCcccccCccc--cCCCCCcEEECCCCCCCCCCc
Q 035922           39 RVAGNETDREALLEFKSKITVDPFGVLGSW----NESSHFCKWHESLKLAGSISPYI--GNLSFLRRLHLDNNNFTHAIP  112 (581)
Q Consensus        39 ~~~~~~~~~~~ll~~k~~~~~~~~~~l~~w----~~~~~~c~w~~~~~~~g~i~~~~--~~l~~L~~L~Ls~n~l~~~~p  112 (581)
                      ..++..+|++||++||+.+..|+.+..+.|    ....++|.|.|...  ..++..+  ...+++++|+|++|.++ .+|
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~--~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp   97 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL--KATADLLEDATQPGRVALELRSVPLP-QFP   97 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHH--HHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred             ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcch--hhhHHHHhcccccceeEEEccCCCch-hcC
Confidence            344567899999999999877888888899    45668999987321  1111111  24578899999999998 778


Q ss_pred             hhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCC
Q 035922          113 PEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSS  192 (581)
Q Consensus       113 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  192 (581)
                      ..+.++++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|++.+.+|..+...  
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~--  173 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST--  173 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE--
T ss_pred             hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc--
Confidence            88888999999999999998 88888999999999999999998 778888899999999999988888888766540  


Q ss_pred             CcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccc
Q 035922          193 IIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN  249 (581)
Q Consensus       193 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  249 (581)
                                   ..+..+.++++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus       174 -------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          174 -------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             -------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred             -------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence                         01122444556666666666555 45544444444444333333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.5e-36  Score=320.74  Aligned_cols=384  Identities=19%  Similarity=0.126  Sum_probs=205.8

Q ss_pred             CCCcEEECCCCCCCCCCchh-ccCCCCCCEEEccCCCCCC----CCcccCcCCCCCCEEEccCCcCcccCCccc-CCCC-
Q 035922           95 SFLRRLHLDNNNFTHAIPPE-IGRLRRLRGLTLNNNSIGG----EIPATMSRCSNIILMDLSVNQLLGNIPPEF-GSLS-  167 (581)
Q Consensus        95 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~-  167 (581)
                      ++|++|++++++++...... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46788999998887543333 6788899999999998874    346677888889999999988875433332 2344 


Q ss_pred             ---CCCEEECCCCcccc----cCCccCcCCCCCcEEEccCCCCCCcCCCccC-----CCCcccccccCCccCCCCC----
Q 035922          168 ---KIKDLRSFMNNLTG----SIPSSLGNLSSIIRLSLTYNNIARSIPDTLG-----YLENLSFLSLGGNMLSGTI----  231 (581)
Q Consensus       168 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~~----  231 (581)
                         +|++|++++|+++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|++++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888874    4577778888888888888887543332221     2345666666666665422    


Q ss_pred             CccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCc
Q 035922          232 PSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK  311 (581)
Q Consensus       232 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~  311 (581)
                      +..+..+++|++|++++|.+.+..+..+.                                ..+....++|++|++++|.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~--------------------------------~~l~~~~~~L~~L~L~~n~  210 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLC--------------------------------QGLKDSPCQLEALKLESCG  210 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHH--------------------------------HHHHHSCCCCCEEECTTSC
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHH--------------------------------HHHhcCCCCceEEEccCCC
Confidence            22233334444444444333321111111                                0011011245555555554


Q ss_pred             cccc----CchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCC
Q 035922          312 IFGS----IPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT  387 (581)
Q Consensus       312 l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  387 (581)
                      +++.    ++..+..+++|++|++++|++++.....+.                   +..+..+++|++|++++|.++..
T Consensus       211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~  271 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAK  271 (461)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHH
T ss_pred             CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHH
Confidence            4432    233444445555555555544422111000                   11112344444444444444432


Q ss_pred             ----CcccccCCCCCcEEECCCCcccccCCcchhcc-----cCCcceeEcCCCccccc----CCccccCCCCCCeeeccC
Q 035922          388 ----IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGL-----SSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISG  454 (581)
Q Consensus       388 ----~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l-----~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~  454 (581)
                          ++..+..+++|++|++++|.+.+..+..+...     +++ +.|++++|.+++.    ++..+..+++|++|++++
T Consensus       272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  350 (461)
T 1z7x_W          272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN  350 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence                33334445555555555555543322222221     344 5555555555543    334445556666666666


Q ss_pred             CcCccccCccccC-----CCCCcEEECCCCcCcc----cCcccccCCCCCCEEECCCCccccccchhhh-----cCCCCC
Q 035922          455 NLLSGEIPISLGS-----CTSLEKLLMQGNKFYG----PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLA-----GFKLLE  520 (581)
Q Consensus       455 n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~-----~l~~L~  520 (581)
                      |++++..+..+..     .++|++|++++|++++    .+|..+..+++|+.|++++|++++.-...+.     ....|+
T Consensus       351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~  430 (461)
T 1z7x_W          351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE  430 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCC
T ss_pred             CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchh
Confidence            6665443333322     4566666666666664    5556666666666666666666543222221     123466


Q ss_pred             EEECcCCCCC
Q 035922          521 NVNLSYNDLG  530 (581)
Q Consensus       521 ~L~ls~N~l~  530 (581)
                      .|++.++.+.
T Consensus       431 ~L~~~~~~~~  440 (461)
T 1z7x_W          431 QLVLYDIYWS  440 (461)
T ss_dssp             EEECTTCCCC
T ss_pred             heeecccccC
Confidence            6666665554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=8.5e-36  Score=314.98  Aligned_cols=378  Identities=16%  Similarity=0.090  Sum_probs=262.1

Q ss_pred             CCCCEEEccCCCCCCCCccc-CcCCCCCCEEEccCCcCcc----cCCcccCCCCCCCEEECCCCcccccCCccC-cCCC-
Q 035922          119 RRLRGLTLNNNSIGGEIPAT-MSRCSNIILMDLSVNQLLG----NIPPEFGSLSKIKDLRSFMNNLTGSIPSSL-GNLS-  191 (581)
Q Consensus       119 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~-  191 (581)
                      ++|++|++++|.++...... +..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            56788888888887443333 6778888888888888764    345667777888888888887765433322 2233 


Q ss_pred             ---CCcEEEccCCCCCC----cCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCC
Q 035922          192 ---SIIRLSLTYNNIAR----SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP  264 (581)
Q Consensus       192 ---~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  264 (581)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++.                        .+..+..   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~------------------------~~~~l~~---  135 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA------------------------GLQLLCE---  135 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH------------------------HHHHHHH---
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH------------------------HHHHHHH---
Confidence               57777777777653    3355555666666666666655422                        1111111   


Q ss_pred             CCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccccc----CchhhcCCCCCCEEEeecCcCcccc
Q 035922          265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNNKLSGTI  340 (581)
Q Consensus       265 ~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~  340 (581)
                                                   .+....++|++|++++|.+++.    ++..+..+++|++|++++|.+++..
T Consensus       136 -----------------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          136 -----------------------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             -----------------------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             -----------------------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence                                         0000012566677777766653    3455666778888888888776544


Q ss_pred             ccccc-----CCCCCCeEeccCCccccc----CCccCCCCCCCcEEeecCcccCCCC-----cccccCCCCCcEEECCCC
Q 035922          341 PSAIG-----DLQNLRMLGMSGNRFSGN----IPLSVGNLKMLIQLEVSENFLQGTI-----PSSLCQCKSLIGINFSKN  406 (581)
Q Consensus       341 ~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~ls~n  406 (581)
                      +..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            43332     356888888888887753    4555667788888888888876532     233346899999999999


Q ss_pred             ccccc----CCcchhcccCCcceeEcCCCcccccCCccccC-----CCCCCeeeccCCcCccc----cCccccCCCCCcE
Q 035922          407 NLSGT----IPPQLFGLSSLSISLDLSRNHFTGSLPIEVGN-----LKNLGVLDISGNLLSGE----IPISLGSCTSLEK  473 (581)
Q Consensus       407 ~l~~~----~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~  473 (581)
                      .+++.    ++..+..++++ +.|++++|.+++..+..+..     .++|++|++++|.+++.    ++..+..+++|++
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  345 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE  345 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred             CCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence            99854    67778889999 89999999998654444443     36999999999999865    5667788899999


Q ss_pred             EECCCCcCcccCcccccC-----CCCCCEEECCCCcccc----ccchhhhcCCCCCEEECcCCCCCCCCCCCc-----cc
Q 035922          474 LLMQGNKFYGPIPSSLRS-----LRGLSVWDFAQNNLSG----EIPKFLAGFKLLENVNLSYNDLGARYVPTE-----GV  539 (581)
Q Consensus       474 L~Ls~n~l~~~~p~~l~~-----l~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~-----~~  539 (581)
                      |++++|.+.+..+..+..     .++|+.|++++|.+++    .+|..+..+++|++|++++|++++..+...     ..
T Consensus       346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~  425 (461)
T 1z7x_W          346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP  425 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred             EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence            999999998766555543     7899999999999986    788999999999999999999975311111     11


Q ss_pred             cCCcCcccccCCCC
Q 035922          540 IKNSSATSVMGNSK  553 (581)
Q Consensus       540 ~~~l~~l~~~gN~~  553 (581)
                      ..+++.+.+.++.+
T Consensus       426 ~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          426 GCLLEQLVLYDIYW  439 (461)
T ss_dssp             TCCCCEEECTTCCC
T ss_pred             Ccchhheeeccccc
Confidence            23566677766654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.5e-31  Score=269.49  Aligned_cols=204  Identities=18%  Similarity=0.143  Sum_probs=104.3

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcc--cccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEe
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE  378 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  378 (581)
                      +|++|++++|.+++..+..+..+++|++|++++|.++.  ..+..+..+++|++|++++|.++ .+|..+.  ++|++|+
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~  198 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH  198 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence            45555666666555555556666777777777776642  44556666666677777666665 2333322  4555666


Q ss_pred             ecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922          379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS  458 (581)
Q Consensus       379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  458 (581)
                      +++|.+++..|..+..+++|++|++++|.+.+..+..+..++++ +.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC-CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            66655555555555555555555555555554434344444444 44444444444 34444444444444444444444


Q ss_pred             cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc--ccchhhhcCCCCCEEECcCC
Q 035922          459 GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG--EIPKFLAGFKLLENVNLSYN  527 (581)
Q Consensus       459 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~N  527 (581)
                      +..+..|....                  .....+.++.|++++|.+..  ..|..+..++.++.+++++|
T Consensus       277 ~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          277 AIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            33222221110                  00012445555555555532  33455555666666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3.6e-32  Score=274.27  Aligned_cols=294  Identities=22%  Similarity=0.279  Sum_probs=178.4

Q ss_pred             CCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECC
Q 035922           96 FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF  175 (581)
Q Consensus        96 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  175 (581)
                      ++++++++++.++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..++++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4678888888887 5665553  688888888888887767788888888888888888887778888888888888888


Q ss_pred             CCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCC--CCCccccCCCCccEEEcccccCcc
Q 035922          176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSG--TIPSSIFNRSSITTFSVVLNRMQG  253 (581)
Q Consensus       176 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~  253 (581)
                      +|+++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.++.  ..+..+..+ +|+.|++++|.+.+
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            88887 5666555  788888888888876666667788888888888887752  344444433 44444444444332


Q ss_pred             cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeec
Q 035922          254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN  333 (581)
Q Consensus       254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  333 (581)
                       +                                    |..+.   ++|++|++++|.+++..+..+..+++|++|++++
T Consensus       187 -l------------------------------------~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~  226 (332)
T 2ft3_A          187 -I------------------------------------PKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH  226 (332)
T ss_dssp             -C------------------------------------CSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred             -c------------------------------------Ccccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence             1                                    11111   2455555555555544444555555555555555


Q ss_pred             CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC
Q 035922          334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP  413 (581)
Q Consensus       334 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  413 (581)
                      |++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+.....                
T Consensus       227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----------------  289 (332)
T 2ft3_A          227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF----------------  289 (332)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC----------------
T ss_pred             CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc----------------
Confidence            5555444445555555555555555554 44444555555555555555555433333322100                


Q ss_pred             cchhcccCCcceeEcCCCccc--ccCCccccCCCCCCeeeccCCc
Q 035922          414 PQLFGLSSLSISLDLSRNHFT--GSLPIEVGNLKNLGVLDISGNL  456 (581)
Q Consensus       414 ~~~~~l~~L~~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~  456 (581)
                        ......+ +.|++++|.+.  +..|..+..+++|+.+++++|+
T Consensus       290 --~~~~~~l-~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          290 --GVKRAYY-NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             --CSSSCCB-SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             --ccccccc-cceEeecCcccccccCcccccccchhhhhhccccc
Confidence              0001233 45566666554  3445556666666666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1e-31  Score=270.97  Aligned_cols=152  Identities=24%  Similarity=0.315  Sum_probs=77.6

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc--ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEe
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE  378 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  378 (581)
                      +|++|++++|.+.+..+..+..+++|++|++++|.++  +..+..+..+ +|++|++++|.+++ +|..+.  ++|++|+
T Consensus       124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~  199 (332)
T 2ft3_A          124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELH  199 (332)
T ss_dssp             TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCB
T ss_pred             cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEE
Confidence            4555555555555444444556666666666666664  2444555555 66666666666653 333322  4555555


Q ss_pred             ecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922          379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS  458 (581)
Q Consensus       379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  458 (581)
                      +++|.+++..+..+..+++|++|++++|++.+..+..+..++++ +.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL-RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC-CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC-CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            55555555444455555555555555555543333344444444 44444444444 34444444444444444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.6e-31  Score=269.39  Aligned_cols=250  Identities=20%  Similarity=0.273  Sum_probs=174.3

Q ss_pred             CCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECC
Q 035922           96 FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF  175 (581)
Q Consensus        96 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  175 (581)
                      ++++++++++.++ .+|..+.  ++|++|++++|.+++..+..|+++++|++|++++|.+++..|..++.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4577888888877 4565443  678888888888887666678888888888888888887778888888888888888


Q ss_pred             CCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCC--CCCccccCCCCccEEEcccccCcc
Q 035922          176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSG--TIPSSIFNRSSITTFSVVLNRMQG  253 (581)
Q Consensus       176 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~  253 (581)
                      +|+++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.+..
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            88887 5666554  688888888888877666677788888888888887752  444555555555555555554431


Q ss_pred             cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeec
Q 035922          254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN  333 (581)
Q Consensus       254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  333 (581)
                       +|                                    ..+.   ++|++|++++|.+++..+..+..+++|++|++++
T Consensus       186 -l~------------------------------------~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          186 -IP------------------------------------QGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             -CC------------------------------------SSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             -CC------------------------------------cccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence             11                                    1111   2667777777777666666677777777777777


Q ss_pred             CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccc
Q 035922          334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSL  392 (581)
Q Consensus       334 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  392 (581)
                      |++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+
T Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            7776655556666777777777777666 556666666667777777776665444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2.6e-33  Score=305.46  Aligned_cols=408  Identities=13%  Similarity=0.072  Sum_probs=231.8

Q ss_pred             CccccCCCCCcEEECCCCCC---CCCCchhcc------------CCCCCCEEEccCCCCCCCCcccCcC-CC-CCCEEEc
Q 035922           88 SPYIGNLSFLRRLHLDNNNF---THAIPPEIG------------RLRRLRGLTLNNNSIGGEIPATMSR-CS-NIILMDL  150 (581)
Q Consensus        88 ~~~~~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~p~~l~~-l~-~L~~L~L  150 (581)
                      +..+..+++|++|+++++..   .+.+|..++            .+++|++|+|++|.+++..+..+.. ++ +|++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            33456788899999977532   123332222            6888999999888887666666655 33 4888888


Q ss_pred             cCCc-Ccc-cCCcccCCCCCCCEEECCCCccccc----CCccCcCCCCCcEEEccCCCCCC----cCCCccCCCCccccc
Q 035922          151 SVNQ-LLG-NIPPEFGSLSKIKDLRSFMNNLTGS----IPSSLGNLSSIIRLSLTYNNIAR----SIPDTLGYLENLSFL  220 (581)
Q Consensus       151 s~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L  220 (581)
                      ++|. ++. .++.....+++|++|++++|.+++.    ++..+..+++|++|++++|.+++    .++..+.++++|++|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            8876 221 2223334678888888888887655    33345567888888888888763    233344567788888


Q ss_pred             ccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhccc
Q 035922          221 SLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFST  300 (581)
Q Consensus       221 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~  300 (581)
                      ++++|.+. .+|..+..+++|++++++.........                                 ..+..+..+ +
T Consensus       226 ~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~---------------------------------~~~~~l~~~-~  270 (592)
T 3ogk_B          226 KVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMP---------------------------------EKYMNLVFP-R  270 (592)
T ss_dssp             ECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCT---------------------------------TSSSCCCCC-T
T ss_pred             eccCccHH-HHHHHHhhhhHHHhhcccccccccchH---------------------------------HHHHHhhcc-c
Confidence            88888777 366667777777777776422210000                                 001111111 2


Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccccc-ccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV  379 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  379 (581)
                      +|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++
T Consensus       271 ~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          271 KLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             TCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             cccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence            45555555432 22344445555556666666555443222 22445556666666522222222222234555666666


Q ss_pred             cC-----------cccCCC-CcccccCCCCCcEEECCCCcccccCCcchhc-ccCCcceeEcC----CCccccc-----C
Q 035922          380 SE-----------NFLQGT-IPSSLCQCKSLIGINFSKNNLSGTIPPQLFG-LSSLSISLDLS----RNHFTGS-----L  437 (581)
Q Consensus       380 ~~-----------n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~~L~Ls----~n~l~~~-----~  437 (581)
                      ++           +.+++. ++.....+++|++|+++.|.+++..+..+.. +++| +.|+++    .|.+++.     +
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~  428 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGV  428 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHH
T ss_pred             ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHH
Confidence            52           333322 1112234566666666666665555555444 5555 566664    4455532     2


Q ss_pred             CccccCCCCCCeeeccCCc--CccccCcccc-CCCCCcEEECCCCcCccc-CcccccCCCCCCEEECCCCccccc-cchh
Q 035922          438 PIEVGNLKNLGVLDISGNL--LSGEIPISLG-SCTSLEKLLMQGNKFYGP-IPSSLRSLRGLSVWDFAQNNLSGE-IPKF  512 (581)
Q Consensus       438 p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~-~p~~  512 (581)
                      +..+.++++|++|++++|.  +++..+..+. .+++|+.|++++|++++. ++..+..+++|+.|++++|.+++. ++..
T Consensus       429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  508 (592)
T 3ogk_B          429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA  508 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred             HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence            2334556677777776433  5544444443 366777777777776642 344446667777777777776543 3344


Q ss_pred             hhcCCCCCEEECcCCCCCCC
Q 035922          513 LAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       513 l~~l~~L~~L~ls~N~l~~~  532 (581)
                      +..+++|++|++++|+++..
T Consensus       509 ~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          509 VTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHCSSCCEEEEESCBCCTT
T ss_pred             HHhcCccCeeECcCCcCCHH
Confidence            45677777777777776644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=257.04  Aligned_cols=276  Identities=17%  Similarity=0.170  Sum_probs=184.5

Q ss_pred             CCCCCccccCCCCcc----cccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCC
Q 035922           70 ESSHFCKWHESLKLA----GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI  145 (581)
Q Consensus        70 ~~~~~c~w~~~~~~~----g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  145 (581)
                      .....|.|.+.+...    ..+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|
T Consensus        25 ~~~~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           25 QASLSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             --CCEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            344566676532221    24555443  478899999998887666688888999999999998887777888888999


Q ss_pred             CEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCc--cCcCCCCCcEEEccCC-CCCCcCCCccCCCCccccccc
Q 035922          146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPS--SLGNLSSIIRLSLTYN-NIARSIPDTLGYLENLSFLSL  222 (581)
Q Consensus       146 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~l  222 (581)
                      ++|++++|.+++..+..++++++|++|++++|++++ +|.  .+.++++|++|++++| .+.+..+..+.++++|++|++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            999999998886555558888899999999888884 444  6888888999998888 466666677888888888888


Q ss_pred             CCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCC
Q 035922          223 GGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTL  302 (581)
Q Consensus       223 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L  302 (581)
                      ++|++++..|..+..+++|++|++++|.+. .++..+...++                                    +|
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~------------------------------------~L  224 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS------------------------------------SV  224 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTT------------------------------------TE
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcc------------------------------------cc
Confidence            888888777888888888888887777764 33333222233                                    45


Q ss_pred             cEEEccCCcccccCchhh---cCCCCCCEEEeecCcCcc----cccccccCCCCCCeEeccCCcccccCCcc-CCCCCCC
Q 035922          303 ASLFLDNNKIFGSIPPGI---GKLVNLRRLYVWNNKLSG----TIPSAIGDLQNLRMLGMSGNRFSGNIPLS-VGNLKML  374 (581)
Q Consensus       303 ~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L  374 (581)
                      +.|++++|.+++..+..+   ...+.++.++++++.+++    .+|..+..+++|++|++++|.++ .+|.. |..+++|
T Consensus       225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L  303 (353)
T 2z80_A          225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL  303 (353)
T ss_dssp             EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC
Confidence            555555555554332222   234456666666666553    24455555666666666666655 33333 3455555


Q ss_pred             cEEeecCcccCC
Q 035922          375 IQLEVSENFLQG  386 (581)
Q Consensus       375 ~~L~L~~n~l~~  386 (581)
                      ++|++++|++.+
T Consensus       304 ~~L~L~~N~~~~  315 (353)
T 2z80_A          304 QKIWLHTNPWDC  315 (353)
T ss_dssp             CEEECCSSCBCC
T ss_pred             CEEEeeCCCccC
Confidence            555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.6e-29  Score=253.86  Aligned_cols=226  Identities=17%  Similarity=0.257  Sum_probs=199.1

Q ss_pred             cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922          300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV  379 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  379 (581)
                      +.++.|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            47889999999988 67777888999999999999998 78888889999999999999988 77888889999999999


Q ss_pred             cCcccCCCCcccccC---------CCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCee
Q 035922          380 SENFLQGTIPSSLCQ---------CKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL  450 (581)
Q Consensus       380 ~~n~l~~~~p~~l~~---------l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L  450 (581)
                      ++|.+.+.+|..+..         +++|++|++++|++. .+|..+..+++| ++|++++|+++ .+|..+..+++|++|
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~-~l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLS-ALGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCC-cCchhhccCCCCCEE
Confidence            998888888877654         889999999999988 888888888888 89999999998 466678889999999


Q ss_pred             eccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922          451 DISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG  530 (581)
Q Consensus       451 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  530 (581)
                      ++++|++.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.+++..|.+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999988889988999999999999999998899988999999999999999999999999999999999998877665


Q ss_pred             C
Q 035922          531 A  531 (581)
Q Consensus       531 ~  531 (581)
                      .
T Consensus       315 ~  315 (328)
T 4fcg_A          315 Q  315 (328)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2e-29  Score=251.21  Aligned_cols=257  Identities=25%  Similarity=0.258  Sum_probs=218.7

Q ss_pred             cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcc--cccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEE
Q 035922          300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL  377 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  377 (581)
                      +++++|++++|.++...+..+..+++|++|++++|+++.  ..+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            489999999999985555557899999999999999873  33667778999999999999988 466678899999999


Q ss_pred             eecCcccCCCCc-ccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc-cCCccccCCCCCCeeeccCC
Q 035922          378 EVSENFLQGTIP-SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG-SLPIEVGNLKNLGVLDISGN  455 (581)
Q Consensus       378 ~L~~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n  455 (581)
                      ++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..++++ +.|++++|.+++ .+|..+..+++|++|++++|
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            999999986654 578889999999999999998888888889999 899999999986 57888999999999999999


Q ss_pred             cCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC-CCCEEECcCCCCCCCCC
Q 035922          456 LLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK-LLENVNLSYNDLGARYV  534 (581)
Q Consensus       456 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~i  534 (581)
                      ++++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|..+..++ +|++|++++|++++. .
T Consensus       186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~-c  264 (306)
T 2z66_A          186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT-C  264 (306)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS-G
T ss_pred             CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc-c
Confidence            99988888999999999999999999987777899999999999999999999999999885 999999999999875 4


Q ss_pred             CCc---cccCCcCcccccCCCCCccCCC
Q 035922          535 PTE---GVIKNSSATSVMGNSKLCGGIP  559 (581)
Q Consensus       535 p~~---~~~~~l~~l~~~gN~~lcg~~~  559 (581)
                      +..   .-+...+.+.+..+...|..+.
T Consensus       265 ~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          265 EHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             GGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             ChHHHHHHHHhhhhhhccccccccCCch
Confidence            321   2233445566677777886543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.9e-32  Score=296.18  Aligned_cols=405  Identities=12%  Similarity=0.041  Sum_probs=280.5

Q ss_pred             CCchhccCCCCCCEEEccCCCC---CCCCcccCc------------CCCCCCEEEccCCcCcccCCcccCC-CC-CCCEE
Q 035922          110 AIPPEIGRLRRLRGLTLNNNSI---GGEIPATMS------------RCSNIILMDLSVNQLLGNIPPEFGS-LS-KIKDL  172 (581)
Q Consensus       110 ~~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~p~~l~~-l~-~L~~L  172 (581)
                      ..+..+..+++|++|+++++..   .+.+|..++            .+++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            3445567889999999988632   123443333            6788888888888877665555554 33 48888


Q ss_pred             ECCCCc-ccc-cCCccCcCCCCCcEEEccCCCCCCc----CCCccCCCCcccccccCCccCCC----CCCccccCCCCcc
Q 035922          173 RSFMNN-LTG-SIPSSLGNLSSIIRLSLTYNNIARS----IPDTLGYLENLSFLSLGGNMLSG----TIPSSIFNRSSIT  242 (581)
Q Consensus       173 ~L~~n~-l~~-~~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~  242 (581)
                      ++++|. ++. .++....++++|++|++++|.+++.    ++..+..+++|++|++++|.+++    .++..+.++++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            888776 221 1222234677888888888776554    22233456677777777776652    2222333444455


Q ss_pred             EEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccc---ccCchh
Q 035922          243 TFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIF---GSIPPG  319 (581)
Q Consensus       243 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~---~~~p~~  319 (581)
                      +|++++|.+.+                                     +|..+..++ +|++|+++.....   +..+..
T Consensus       224 ~L~L~~~~~~~-------------------------------------l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          224 SVKVGDFEILE-------------------------------------LVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             EEECSSCBGGG-------------------------------------GHHHHHHCT-TCCEEEECBCCCCTTCTTSSSC
T ss_pred             EEeccCccHHH-------------------------------------HHHHHhhhh-HHHhhcccccccccchHHHHHH
Confidence            55544444332                                     334444443 7777777653322   234456


Q ss_pred             hcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCC-ccCCCCCCCcEEeecCcccCCCCcccccCCCCC
Q 035922          320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIP-LSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSL  398 (581)
Q Consensus       320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  398 (581)
                      +..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|
T Consensus       266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred             hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence            77889999999998644 3677888899999999999999765433 335789999999999544333444555678999


Q ss_pred             cEEECCC-----------Cccccc-CCcchhcccCCcceeEcCCCcccccCCccccC-CCCCCeeecc----CCcCccc-
Q 035922          399 IGINFSK-----------NNLSGT-IPPQLFGLSSLSISLDLSRNHFTGSLPIEVGN-LKNLGVLDIS----GNLLSGE-  460 (581)
Q Consensus       399 ~~L~ls~-----------n~l~~~-~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~n~l~~~-  460 (581)
                      ++|++++           +.+++. ++.....+++| ++|+++.|.+++..+..+.. +++|+.|+++    .|.+++. 
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p  423 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL-EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP  423 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC-SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccC-eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence            9999993           566543 23334568888 89999999999877777765 8999999996    6778753 


Q ss_pred             ----cCccccCCCCCcEEECCCCc--CcccCccccc-CCCCCCEEECCCCcccc-ccchhhhcCCCCCEEECcCCCCCCC
Q 035922          461 ----IPISLGSCTSLEKLLMQGNK--FYGPIPSSLR-SLRGLSVWDFAQNNLSG-EIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       461 ----~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                          ++..+..+++|++|++++|.  +++..+..+. .+++|+.|++++|.+++ .++..+.++++|++|++++|++++.
T Consensus       424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence                44457789999999998654  6666555554 48999999999999987 4566678999999999999998754


Q ss_pred             CCCCc-cccCCcCcccccCCCCCc
Q 035922          533 YVPTE-GVIKNSSATSVMGNSKLC  555 (581)
Q Consensus       533 ~ip~~-~~~~~l~~l~~~gN~~lc  555 (581)
                      .++.. ..+++|+.+++++|. +.
T Consensus       504 ~~~~~~~~l~~L~~L~ls~n~-it  526 (592)
T 3ogk_B          504 AIAAAVTKLPSLRYLWVQGYR-AS  526 (592)
T ss_dssp             HHHHHHHHCSSCCEEEEESCB-CC
T ss_pred             HHHHHHHhcCccCeeECcCCc-CC
Confidence            34432 467899999999998 44

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=8.5e-29  Score=243.98  Aligned_cols=252  Identities=21%  Similarity=0.230  Sum_probs=187.8

Q ss_pred             cEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922          303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN  382 (581)
Q Consensus       303 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  382 (581)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56667666666 344433  457777888777777666666777777888888887777666777777788888888887


Q ss_pred             c-cCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcccc
Q 035922          383 F-LQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI  461 (581)
Q Consensus       383 ~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  461 (581)
                      . +....|..+..+++|++|++++|++.+..|..+..+++| ++|++++|++++..+..+..+++|++|++++|++++..
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            6 665556777777888888888888876666777777777 78888888887655666778888888888888888655


Q ss_pred             CccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccC
Q 035922          462 PISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIK  541 (581)
Q Consensus       462 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~  541 (581)
                      +..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++... .+......
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~-~~~~~~~~  248 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWA  248 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS-GGGHHHHH
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC-CCcHHHHH
Confidence            56678888888888888888877788888888888888888888877667788888888888888888765 55444444


Q ss_pred             CcCcccccCCCCCccCCC
Q 035922          542 NSSATSVMGNSKLCGGIP  559 (581)
Q Consensus       542 ~l~~l~~~gN~~lcg~~~  559 (581)
                      .++......|...|..++
T Consensus       249 ~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             HHHHCCSEECCCBEEESG
T ss_pred             HHHhcccccCccccCCch
Confidence            455666677777776443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=4.2e-28  Score=254.22  Aligned_cols=237  Identities=24%  Similarity=0.240  Sum_probs=188.8

Q ss_pred             cCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCC
Q 035922          290 LIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVG  369 (581)
Q Consensus       290 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  369 (581)
                      .+|..+.   ++++.|++++|.+.+..+..+.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|.
T Consensus        57 ~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  133 (440)
T 3zyj_A           57 EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV  133 (440)
T ss_dssp             SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred             cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence            3555544   4788888888888877777888888888888888888877777888888888888888888866666788


Q ss_pred             CCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCc-chhcccCCcceeEcCCCcccccCCccccCCCCCC
Q 035922          370 NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP-QLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLG  448 (581)
Q Consensus       370 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~  448 (581)
                      .+++|++|++++|+++...+..+..+++|++|++++|...+.++. .+..+++| +.|++++|+++ .+| .+..+++|+
T Consensus       134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~-~~~-~~~~l~~L~  210 (440)
T 3zyj_A          134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLR-EIP-NLTPLIKLD  210 (440)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCS-SCC-CCTTCSSCC
T ss_pred             ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCc-ccc-ccCCCcccC
Confidence            888888888888888876666788888888888888554445544 56777788 78888888887 455 477788888


Q ss_pred             eeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCC
Q 035922          449 VLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYND  528 (581)
Q Consensus       449 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~  528 (581)
                      +|+|++|++++..|..|..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|+
T Consensus       211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            88888888887778888888888888888888887777788888888888888888887777777888888888888888


Q ss_pred             CCCC
Q 035922          529 LGAR  532 (581)
Q Consensus       529 l~~~  532 (581)
                      +...
T Consensus       291 ~~Cd  294 (440)
T 3zyj_A          291 WNCN  294 (440)
T ss_dssp             EECS
T ss_pred             ccCC
Confidence            7643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.6e-28  Score=244.70  Aligned_cols=250  Identities=22%  Similarity=0.214  Sum_probs=219.0

Q ss_pred             CcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCccccc--CCccCCCCCCCcEEee
Q 035922          302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN--IPLSVGNLKMLIQLEV  379 (581)
Q Consensus       302 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L  379 (581)
                      -+.++.+++.++ .+|..+  .++|++|++++|+++...+..+..+++|++|++++|.++..  .+..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            457888888887 556544  36899999999999965555689999999999999998733  3566778999999999


Q ss_pred             cCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922          380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS  458 (581)
Q Consensus       380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  458 (581)
                      ++|.+. .+|..+..+++|++|++++|++.+..+ ..+..++++ ++|++++|.+++..+..+..+++|++|++++|.++
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC-CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCC-CEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            999998 467779999999999999999985544 578889999 89999999999888889999999999999999998


Q ss_pred             c-ccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-
Q 035922          459 G-EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-  536 (581)
Q Consensus       459 ~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-  536 (581)
                      + .+|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++. .|. 
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~  242 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQE  242 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC-SSSS
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc-CHHH
Confidence            6 6888999999999999999999988899999999999999999999988888899999999999999999987 664 


Q ss_pred             cccc-CCcCcccccCCCCCccC
Q 035922          537 EGVI-KNSSATSVMGNSKLCGG  557 (581)
Q Consensus       537 ~~~~-~~l~~l~~~gN~~lcg~  557 (581)
                      ...+ .+++.++++||++-|..
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSG
T ss_pred             HHhhhccCCEEEccCCCeeccc
Confidence            4555 58999999999988863

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=5.7e-28  Score=254.11  Aligned_cols=236  Identities=21%  Similarity=0.215  Sum_probs=183.0

Q ss_pred             CchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCC
Q 035922          291 IPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGN  370 (581)
Q Consensus       291 ~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  370 (581)
                      +|..+.   +++++|++++|.+++..+..+.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..
T Consensus        69 iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  145 (452)
T 3zyi_A           69 VPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY  145 (452)
T ss_dssp             CCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred             cCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence            454443   47888888888888777777888888888888888888777778888888888888888888666666778


Q ss_pred             CCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCc-chhcccCCcceeEcCCCcccccCCccccCCCCCCe
Q 035922          371 LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP-QLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGV  449 (581)
Q Consensus       371 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~  449 (581)
                      +++|++|++++|+++...+..+..+++|++|++++|...+.++. .+..+++| +.|++++|++++ +| .+..+++|++
T Consensus       146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~-~~-~~~~l~~L~~  222 (452)
T 3zyi_A          146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKD-MP-NLTPLVGLEE  222 (452)
T ss_dssp             CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSS-CC-CCTTCTTCCE
T ss_pred             cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCcccc-cc-cccccccccE
Confidence            88888888888888866666777888888888888544445544 46677777 788888888874 44 4677788888


Q ss_pred             eeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCC
Q 035922          450 LDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL  529 (581)
Q Consensus       450 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l  529 (581)
                      |+|++|++++..|..|..+++|+.|++++|++.+..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus       223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            88888888877777788888888888888888877777788888888888888888876667777788888888888877


Q ss_pred             CCC
Q 035922          530 GAR  532 (581)
Q Consensus       530 ~~~  532 (581)
                      ...
T Consensus       303 ~Cd  305 (452)
T 3zyi_A          303 NCD  305 (452)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=9e-29  Score=251.61  Aligned_cols=252  Identities=19%  Similarity=0.168  Sum_probs=117.9

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            45555555555544333344555555555555555554444445555555555555555543222224445555555555


Q ss_pred             CcccCCCCc-ccccCCCCCcEEECCCCc-ccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922          381 ENFLQGTIP-SSLCQCKSLIGINFSKNN-LSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS  458 (581)
Q Consensus       381 ~n~l~~~~p-~~l~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  458 (581)
                      +|++++..+ ..+..+++|++|++++|+ +.+..+..+..++++ +.|++++|++++..|..+..+++|++|++++|+++
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL-EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC-CEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            555543222 244445555555555552 332333444444555 45555555555444555555555555555555554


Q ss_pred             cccCccccCCCCCcEEECCCCcCcccCcccc---cCCCCCCEEECCCCcccc----ccchhhhcCCCCCEEECcCCCCCC
Q 035922          459 GEIPISLGSCTSLEKLLMQGNKFYGPIPSSL---RSLRGLSVWDFAQNNLSG----EIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       459 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      ...+..+..+++|+.|++++|.+.+..+..+   .....++.++++++.+.+    .+|..+..+++|++|++++|+++.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            2222222334555555555555544333222   123444455555554443    244445555555555555555542


Q ss_pred             CCCCCc--cccCCcCcccccCCCCCc
Q 035922          532 RYVPTE--GVIKNSSATSVMGNSKLC  555 (581)
Q Consensus       532 ~~ip~~--~~~~~l~~l~~~gN~~lc  555 (581)
                        +|..  +.+++|+.+++.+||+.|
T Consensus       292 --i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          292 --VPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             --CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             --cCHHHHhcCCCCCEEEeeCCCccC
Confidence              3331  344455555555555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=2.5e-28  Score=263.70  Aligned_cols=146  Identities=20%  Similarity=0.265  Sum_probs=100.6

Q ss_pred             CCCCCCCCCCCCCccccCCCCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcC
Q 035922           62 FGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR  141 (581)
Q Consensus        62 ~~~l~~w~~~~~~c~w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  141 (581)
                      ......|....++|.|.+.........  .....++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .
T Consensus         9 ~~~w~~W~~~~~~~~~~~r~~~~~~~~--~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~   79 (622)
T 3g06_A            9 DAVWSAWRRAAPAEESRGRAAVVQKMR--ACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---L   79 (622)
T ss_dssp             -CHHHHHHHTCCGGGHHHHHHHHHHHH--HHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---C
T ss_pred             HHHHHHHHhcCCcchhccccccCcccc--cccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---c
Confidence            345567877778899975221111111  112235899999999998 6777665  79999999999998 5565   5


Q ss_pred             CCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccc
Q 035922          142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLS  221 (581)
Q Consensus       142 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  221 (581)
                      +++|++|++++|.++ .+|.   .+++|++|++++|.+++ +|.   .+++|++|++++|++++ +|..   +++|++|+
T Consensus        80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~  147 (622)
T 3g06_A           80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS  147 (622)
T ss_dssp             CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence            788999999999887 4554   67888888888888874 444   55777788888777754 3432   35666666


Q ss_pred             cCCccCC
Q 035922          222 LGGNMLS  228 (581)
Q Consensus       222 l~~n~l~  228 (581)
                      +++|+++
T Consensus       148 Ls~N~l~  154 (622)
T 3g06_A          148 VSDNQLA  154 (622)
T ss_dssp             CCSSCCS
T ss_pred             CcCCcCC
Confidence            6666665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.9e-27  Score=249.29  Aligned_cols=211  Identities=21%  Similarity=0.182  Sum_probs=161.4

Q ss_pred             chhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCC
Q 035922          292 PECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNL  371 (581)
Q Consensus       292 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  371 (581)
                      +..+.++. +|++|++++|.+.+..+..+..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|..+
T Consensus        81 ~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  159 (440)
T 3zyj_A           81 VNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI  159 (440)
T ss_dssp             TTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred             HHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence            33444443 78888888888877777778888888888888888886666677888888888888888876666677788


Q ss_pred             CCCcEEeecCcc-cCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCee
Q 035922          372 KMLIQLEVSENF-LQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL  450 (581)
Q Consensus       372 ~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L  450 (581)
                      ++|++|++++|. +....+..+..+++|++|++++|++. .+| .+..+++| +.|++++|++++..|..|..+++|++|
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L  236 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKL  236 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC-CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc-CEEECCCCccCccChhhhccCccCCEE
Confidence            888888888754 44333446777888888888888887 555 36677777 788888888887777788888888888


Q ss_pred             eccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922          451 DISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       451 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      ++++|++++..+..|..+++|+.|+|++|++++..++.|..+++|+.|++++|.+.
T Consensus       237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            88888888777777888888888888888888776777788888888888888764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.9e-27  Score=250.06  Aligned_cols=247  Identities=20%  Similarity=0.207  Sum_probs=130.6

Q ss_pred             cEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922          303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN  382 (581)
Q Consensus       303 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  382 (581)
                      ..++.++..++ .+|..+.  +++++|+|++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            34444444444 3343222  45555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCC-cccccCCccccCCCCCCeeeccCCcCcccc
Q 035922          383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRN-HFTGSLPIEVGNLKNLGVLDISGNLLSGEI  461 (581)
Q Consensus       383 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  461 (581)
                      ++++..+..+..+++|++|++++|++.+..+..+..+++| +.|++++| .+....+..+..+++|++|++++|++++ +
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~  211 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M  211 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence            5554444445555555555555555553333345555555 55555553 2332222335555555555555555552 2


Q ss_pred             CccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-cccc
Q 035922          462 PISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVI  540 (581)
Q Consensus       462 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~  540 (581)
                      | .+..+++|+.|++++|++.+..|..|..+++|+.|++++|.+.+..|..|..+++|++|++++|++++. .+. ...+
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l  289 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFTPL  289 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTSSTTC
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc-ChHHhccc
Confidence            3 345555555555555555555555555555555555555555555555555555555555555555543 221 2344


Q ss_pred             CCcCcccccCCCCCcc
Q 035922          541 KNSSATSVMGNSKLCG  556 (581)
Q Consensus       541 ~~l~~l~~~gN~~lcg  556 (581)
                      ++|+.+++.+||+.|.
T Consensus       290 ~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          290 RYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTCCEEECCSSCEECS
T ss_pred             cCCCEEEccCCCcCCC
Confidence            5555555555555553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.2e-27  Score=235.76  Aligned_cols=248  Identities=20%  Similarity=0.189  Sum_probs=211.1

Q ss_pred             cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCc-ccccCCccCCCCCCCcEEe
Q 035922          300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR-FSGNIPLSVGNLKMLIQLE  378 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  378 (581)
                      +++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            489999999999998777889999999999999999998888899999999999999997 7766688899999999999


Q ss_pred             ecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922          379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS  458 (581)
Q Consensus       379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  458 (581)
                      +++|.+++..|..+..+++|++|++++|++.+..+..+..++++ +.|++++|++++..+..+..+++|++|++++|+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            99999998888889999999999999999996666668889999 89999999999766667999999999999999999


Q ss_pred             cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCc-
Q 035922          459 GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE-  537 (581)
Q Consensus       459 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~-  537 (581)
                      +..|..+..+++|+.|++++|++.+..++.+..+++|+.|++++|.+....+.. .-...++.+..+.+.+... .|.. 
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~-~p~~l  268 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCS-LPQRL  268 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEE-ESGGG
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccC-CchHh
Confidence            888999999999999999999999877788999999999999999997654421 1112344455778888877 7753 


Q ss_pred             --cccCCcCcccccC
Q 035922          538 --GVIKNSSATSVMG  550 (581)
Q Consensus       538 --~~~~~l~~l~~~g  550 (581)
                        ..+..++..++.|
T Consensus       269 ~g~~l~~l~~~~l~~  283 (285)
T 1ozn_A          269 AGRDLKRLAANDLQG  283 (285)
T ss_dssp             TTCBGGGSCGGGSCC
T ss_pred             CCcChhhcCHHHhcc
Confidence              2334444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=9.1e-29  Score=246.93  Aligned_cols=232  Identities=20%  Similarity=0.199  Sum_probs=165.5

Q ss_pred             cCchhhhhcccCCcEEEccCCccc-ccCchhhc-------CCCCCCEEEeecCcCcccccccc--cCCCCCCeEeccCCc
Q 035922          290 LIPECISNFSTTLASLFLDNNKIF-GSIPPGIG-------KLVNLRRLYVWNNKLSGTIPSAI--GDLQNLRMLGMSGNR  359 (581)
Q Consensus       290 ~~p~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~  359 (581)
                      .+|..+..   .|+.|++++|.+. ..+|..+.       .+++|++|++++|++++.+|..+  ..+++|++|++++|.
T Consensus        56 ~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~  132 (312)
T 1wwl_A           56 ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS  132 (312)
T ss_dssp             CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred             ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC
Confidence            34554443   3677777777773 34555554       67788888888888887777765  778888888888888


Q ss_pred             ccccCCccCCCC-----CCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccccc--CCcch--hcccCCcceeEcCC
Q 035922          360 FSGNIPLSVGNL-----KMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGT--IPPQL--FGLSSLSISLDLSR  430 (581)
Q Consensus       360 l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~--~p~~~--~~l~~L~~~L~Ls~  430 (581)
                      +++. |..+..+     ++|++|++++|++++..|..+..+++|++|++++|++.+.  ++..+  ..++++ ++|++++
T Consensus       133 l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~L~~  210 (312)
T 1wwl_A          133 WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL-QVLALRN  210 (312)
T ss_dssp             CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC-CEEECTT
T ss_pred             Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC-CEEECCC
Confidence            8765 6666555     7888888888888877777788888888888888887654  23333  667777 7788888


Q ss_pred             Ccccc--cCC-ccccCCCCCCeeeccCCcCccccC-ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922          431 NHFTG--SLP-IEVGNLKNLGVLDISGNLLSGEIP-ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       431 n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      |++++  .++ ..+.++++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+.  ++|+.||+++|+++
T Consensus       211 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred             CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence            87772  222 233466788888888888876664 44556778888888888887 6666655  77888888888887


Q ss_pred             cccchhhhcCCCCCEEECcCCCCCC
Q 035922          507 GEIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       507 ~~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      +. |. +..+++|++|++++|++++
T Consensus       288 ~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          288 RN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CC-hh-HhhCCCCCEEeccCCCCCC
Confidence            65 55 7778888888888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2.6e-28  Score=244.19  Aligned_cols=261  Identities=18%  Similarity=0.118  Sum_probs=205.6

Q ss_pred             eEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922          279 LLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN  358 (581)
Q Consensus       279 ~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  358 (581)
                      ..+++.+.+.......+ ...++|++|++++|.+++..|..+..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        14 i~~ls~~~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           14 IEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EESCCTTTHHHHHHHHH-TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             EeeccccchhhhHHHHh-ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            44555555543333333 333489999999999998877889999999999999999986554  889999999999999


Q ss_pred             cccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC
Q 035922          359 RFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP  438 (581)
Q Consensus       359 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p  438 (581)
                      .+++..     ..++|++|++++|.+++..+.   .+++|++|++++|++.+..+..+..++++ +.|++++|.+++..+
T Consensus        91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           91 YVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNF  161 (317)
T ss_dssp             EEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCEEEG
T ss_pred             cccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCcccH
Confidence            988533     348999999999999866543   36789999999999987777788888889 899999999997777


Q ss_pred             cccc-CCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922          439 IEVG-NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK  517 (581)
Q Consensus       439 ~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~  517 (581)
                      ..+. .+++|++|++++|++++. +. ...+++|++|++++|++.+. |..+..+++|+.|++++|.++ .+|..+..++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            6664 789999999999999854 32 34589999999999999854 445889999999999999998 5788888999


Q ss_pred             CCCEEECcCCCCC-CCCCCC-ccccCCcCcccccCCCCCcc
Q 035922          518 LLENVNLSYNDLG-ARYVPT-EGVIKNSSATSVMGNSKLCG  556 (581)
Q Consensus       518 ~L~~L~ls~N~l~-~~~ip~-~~~~~~l~~l~~~gN~~lcg  556 (581)
                      +|++|++++|++. +. +|. ...++.++.+++.+|+.+.|
T Consensus       238 ~L~~L~l~~N~~~~~~-~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGT-LRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             TCCEEECTTCCCBHHH-HHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEccCCCccCcC-HHHHHhccccceEEECCCchhccC
Confidence            9999999999998 43 554 35566777788875544444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=7.4e-29  Score=247.60  Aligned_cols=243  Identities=19%  Similarity=0.180  Sum_probs=209.2

Q ss_pred             cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc-cccccccc-------CCCCCCeEeccCCcccccCCccC--C
Q 035922          300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS-GTIPSAIG-------DLQNLRMLGMSGNRFSGNIPLSV--G  369 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~--~  369 (581)
                      ++|+.|++++|.+  .+|..+...  |++|++++|+++ ..+|..+.       .+++|++|++++|.+++.+|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            3799999999999  677766654  899999999984 45666555       79999999999999999888876  8


Q ss_pred             CCCCCcEEeecCcccCCCCcccccCC-----CCCcEEECCCCcccccCCcchhcccCCcceeEcCCCccccc--CCccc-
Q 035922          370 NLKMLIQLEVSENFLQGTIPSSLCQC-----KSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS--LPIEV-  441 (581)
Q Consensus       370 ~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~--~p~~l-  441 (581)
                      .+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..+..++++ +.|++++|++.+.  .+..+ 
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL-STLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC-CEEECCSCTTCHHHHHHHHSC
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC-CEEECCCCCcCcchHHHHHHH
Confidence            999999999999999987 7777776     999999999999997777899999999 9999999998865  33444 


Q ss_pred             -cCCCCCCeeeccCCcCcc--ccC-ccccCCCCCcEEECCCCcCcccCc-ccccCCCCCCEEECCCCccccccchhhhcC
Q 035922          442 -GNLKNLGVLDISGNLLSG--EIP-ISLGSCTSLEKLLMQGNKFYGPIP-SSLRSLRGLSVWDFAQNNLSGEIPKFLAGF  516 (581)
Q Consensus       442 -~~l~~L~~L~Ls~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l  516 (581)
                       ..+++|++|++++|++++  .++ ..+..+++|++|++++|++.+.+| ..+..+++|+.|++++|.++ .+|..+.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence             889999999999999983  222 344688999999999999998775 46677899999999999998 7787766  


Q ss_pred             CCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCC
Q 035922          517 KLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSK  553 (581)
Q Consensus       517 ~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~  553 (581)
                      ++|++|++++|++++  +|....+++|+.+++++|+.
T Consensus       274 ~~L~~L~Ls~N~l~~--~p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             SEEEEEECCSSCCCS--CCCTTTSCEEEEEECTTCTT
T ss_pred             CCceEEECCCCCCCC--ChhHhhCCCCCEEeccCCCC
Confidence            899999999999988  57788889999999999984

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=1.2e-27  Score=253.10  Aligned_cols=243  Identities=19%  Similarity=0.122  Sum_probs=208.5

Q ss_pred             cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922          300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV  379 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  379 (581)
                      ++|++|++++|.+++..|..+..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            389999999999998888899999999999999999997665  8899999999999999985432     389999999


Q ss_pred             cCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCcccc-CCCCCCeeeccCCcCc
Q 035922          380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVG-NLKNLGVLDISGNLLS  458 (581)
Q Consensus       380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~  458 (581)
                      ++|.+++..+.   .+++|++|++++|.+.+..|..+..++.| +.|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            99999976554   46889999999999998888899999999 8999999999988888876 7999999999999999


Q ss_pred             cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC-CCCCCC-
Q 035922          459 GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG-ARYVPT-  536 (581)
Q Consensus       459 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~ip~-  536 (581)
                      +..+  +..+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +. +|. 
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~-~~~~  257 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT-LRDF  257 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH-HHHH
T ss_pred             cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc-hHHH
Confidence            6533  4469999999999999997555 58999999999999999995 7888999999999999999998 33 543 


Q ss_pred             ccccCCcCccccc-------CCCCCccCC
Q 035922          537 EGVIKNSSATSVM-------GNSKLCGGI  558 (581)
Q Consensus       537 ~~~~~~l~~l~~~-------gN~~lcg~~  558 (581)
                      ...++.++.+++.       +|+..|+..
T Consensus       258 ~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          258 FSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             HHhCCCCcEEeccccccccCCCcccccCC
Confidence            3445566667775       788888654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=9.8e-26  Score=243.53  Aligned_cols=269  Identities=25%  Similarity=0.346  Sum_probs=147.1

Q ss_pred             CCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEc
Q 035922          119 RRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSL  198 (581)
Q Consensus       119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  198 (581)
                      .++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            46888899888888 6776665  78888888888887 4454   4677778888777776 4554   5567777777


Q ss_pred             cCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcce
Q 035922          199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTE  278 (581)
Q Consensus       199 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  278 (581)
                      ++|.+++. |.   .+++|++|++++|+++ .+|..+   +                                       
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~l---~---------------------------------------  141 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVLP---P---------------------------------------  141 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCCC---T---------------------------------------
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCCC---C---------------------------------------
Confidence            77776542 32   3455555666555554 222211   1                                       


Q ss_pred             eEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922          279 LLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN  358 (581)
Q Consensus       279 ~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  358 (581)
                                            +|++|++++|.+++ +|.   .+++|+.|++++|++++ +|   ..+++|+.|++++|
T Consensus       142 ----------------------~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N  191 (622)
T 3g06_A          142 ----------------------GLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN  191 (622)
T ss_dssp             ----------------------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred             ----------------------CCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC
Confidence                                  34444444444332 121   12334444444444442 22   22334444444444


Q ss_pred             cccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC
Q 035922          359 RFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP  438 (581)
Q Consensus       359 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p  438 (581)
                      .+++ +|.   ..+                        +|+.|++++|.+. .+|..   ++++ +.|++++|++++ +|
T Consensus       192 ~l~~-l~~---~~~------------------------~L~~L~L~~N~l~-~l~~~---~~~L-~~L~Ls~N~L~~-lp  237 (622)
T 3g06_A          192 QLAS-LPT---LPS------------------------ELYKLWAYNNRLT-SLPAL---PSGL-KELIVSGNRLTS-LP  237 (622)
T ss_dssp             CCSC-CCC---CCT------------------------TCCEEECCSSCCS-SCCCC---CTTC-CEEECCSSCCSC-CC
T ss_pred             CCCC-CCC---ccc------------------------hhhEEECcCCccc-ccCCC---CCCC-CEEEccCCccCc-CC
Confidence            4432 221   113                        3334444444333 22321   1233 455555555552 33


Q ss_pred             ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922          439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK  517 (581)
Q Consensus       439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~  517 (581)
                         ..+++|+.|++++|+++ .+|.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++.+|..+..++
T Consensus       238 ---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             ---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence               23456666666666666 4444   4566666677777666 5566666677777777777777666666655444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=6.6e-30  Score=278.71  Aligned_cols=423  Identities=13%  Similarity=0.107  Sum_probs=282.7

Q ss_pred             cccCCCCCcEEECCCCCCCC---CCc------------hhccCCCCCCEEEccCCCCCCCCcccCc-CCCCCCEEEccCC
Q 035922           90 YIGNLSFLRRLHLDNNNFTH---AIP------------PEIGRLRRLRGLTLNNNSIGGEIPATMS-RCSNIILMDLSVN  153 (581)
Q Consensus        90 ~~~~l~~L~~L~Ls~n~l~~---~~p------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n  153 (581)
                      .+.++++|++|+++++....   ..|            .....+++|++|+|++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            35677899999999875221   112            1234688999999999998877666665 6899999999999


Q ss_pred             -cCccc-CCcccCCCCCCCEEECCCCcccccCCccC----cCCCCCcEEEccCCC--CCCc-CCCccCCCCcccccccCC
Q 035922          154 -QLLGN-IPPEFGSLSKIKDLRSFMNNLTGSIPSSL----GNLSSIIRLSLTYNN--IARS-IPDTLGYLENLSFLSLGG  224 (581)
Q Consensus       154 -~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~l~~  224 (581)
                       .++.. ++..+.++++|++|++++|.+++..+..+    ..+++|++|++++|.  ++.. ++..+..+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             45432 44455678999999999999876544443    367799999999886  2211 112234568999999998


Q ss_pred             ccCCCCCCccccCCCCccEEEccccc-------CcccCChhhhcCCCCCceee-ccccCcceeEeccCCcCcccCchhhh
Q 035922          225 NMLSGTIPSSIFNRSSITTFSVVLNR-------MQGNIPLDFGFTLPNLQHFG-IVFNNFTELLLLNDNNFGGLIPECIS  296 (581)
Q Consensus       225 n~l~~~~p~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~-l~~n~~~~~l~l~~n~l~~~~p~~~~  296 (581)
                      |...+.++..+..+++|+++++..+.       +.+ ++..+ ..+++|+.+. +...            ..+.++..+.
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l-~~~~~L~~Ls~~~~~------------~~~~l~~~~~  286 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL-SGCKELRCLSGFWDA------------VPAYLPAVYS  286 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH-HTCTTCCEEECCBTC------------CGGGGGGGHH
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH-hcCCCcccccCCccc------------chhhHHHHHH
Confidence            84333477777888899999865543       222 22233 3477777762 2211            1123344444


Q ss_pred             hcccCCcEEEccCCcccccC-chhhcCCCCCCEEEeecCcCccc-ccccccCCCCCCeEeccC---------CcccccCC
Q 035922          297 NFSTTLASLFLDNNKIFGSI-PPGIGKLVNLRRLYVWNNKLSGT-IPSAIGDLQNLRMLGMSG---------NRFSGNIP  365 (581)
Q Consensus       297 ~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~---------n~l~~~~~  365 (581)
                      .+ ++|++|++++|.+++.. ...+..+++|++|++++| ++.. ++.....+++|++|++++         +.+++...
T Consensus       287 ~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          287 VC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             hh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence            44 48999999999876542 333568899999999988 4422 233334588999998844         34443222


Q ss_pred             ccC-CCCCCCcEEeecCcccCCCCccccc-CCCCCcEEECC--C----Ccccc-----cCCcchhcccCCcceeEcCCCc
Q 035922          366 LSV-GNLKMLIQLEVSENFLQGTIPSSLC-QCKSLIGINFS--K----NNLSG-----TIPPQLFGLSSLSISLDLSRNH  432 (581)
Q Consensus       366 ~~~-~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~ls--~----n~l~~-----~~p~~~~~l~~L~~~L~Ls~n~  432 (581)
                      ..+ ..+++|+.|.+..|.+++..+..+. .+++|++|+++  +    +.+++     .++..+..+++| +.|++++ .
T Consensus       365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~  442 (594)
T 2p1m_B          365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-L  442 (594)
T ss_dssp             HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-S
T ss_pred             HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-c
Confidence            222 2478889998888888765555554 47889999988  3    44441     122235567778 8888877 6


Q ss_pred             ccccCCccccC-CCCCCeeeccCCcCccccCccc-cCCCCCcEEECCCCcCcccCcc-cccCCCCCCEEECCCCcccccc
Q 035922          433 FTGSLPIEVGN-LKNLGVLDISGNLLSGEIPISL-GSCTSLEKLLMQGNKFYGPIPS-SLRSLRGLSVWDFAQNNLSGEI  509 (581)
Q Consensus       433 l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~ls~n~l~~~~  509 (581)
                      +++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|+.|++++|.++...
T Consensus       443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  522 (594)
T 2p1m_B          443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA  522 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred             ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence            66555555554 7888999999888876555555 6688899999999888654443 3455788899999998886544


Q ss_pred             chhh-hcCCCCCEEECcCCCCC
Q 035922          510 PKFL-AGFKLLENVNLSYNDLG  530 (581)
Q Consensus       510 p~~l-~~l~~L~~L~ls~N~l~  530 (581)
                      ...+ ..++.|+...+..+.-.
T Consensus       523 ~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          523 CKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             HHHHHHHCTTEEEEEECSSSCG
T ss_pred             HHHHHHhCCCCEEEEecCCCcc
Confidence            4445 56777777666665443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=2.1e-29  Score=274.69  Aligned_cols=422  Identities=13%  Similarity=0.093  Sum_probs=294.2

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCC---CCcc------------cCcCCCCCCEEEccCCcCcccCCcc
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGG---EIPA------------TMSRCSNIILMDLSVNQLLGNIPPE  162 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~---~~p~------------~l~~l~~L~~L~Ls~n~l~~~~p~~  162 (581)
                      +.++++..... .....+..+++|++|+++++....   ..|.            ....+++|++|++++|.+++..+..
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            34555443322 223356788999999999975321   2221            1346889999999999998776666


Q ss_pred             cC-CCCCCCEEECCCC-ccccc-CCccCcCCCCCcEEEccCCCCCCcCCCcc----CCCCcccccccCCcc--CCC-CCC
Q 035922          163 FG-SLSKIKDLRSFMN-NLTGS-IPSSLGNLSSIIRLSLTYNNIARSIPDTL----GYLENLSFLSLGGNM--LSG-TIP  232 (581)
Q Consensus       163 l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l----~~l~~L~~L~l~~n~--l~~-~~p  232 (581)
                      +. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+    ..+++|++|++++|.  +.. .++
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            65 6899999999999 45532 44445589999999999999876544433    367799999999987  221 112


Q ss_pred             ccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEE-EccCCc
Q 035922          233 SSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASL-FLDNNK  311 (581)
Q Consensus       233 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L-~L~~n~  311 (581)
                      .....+++|++|++++|...+.++..+.. +++|+.|++..+..    ++..+.+.+ ++..+.++. +|+.| .+.+..
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~----~~~~~~~~~-l~~~l~~~~-~L~~Ls~~~~~~  277 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQR-APQLEELGTGGYTA----EVRPDVYSG-LSVALSGCK-ELRCLSGFWDAV  277 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHH-CTTCSEEECSBCCC----CCCHHHHHH-HHHHHHTCT-TCCEEECCBTCC
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhc-CCcceEcccccccC----ccchhhHHH-HHHHHhcCC-CcccccCCcccc
Confidence            22345799999999988433345554444 89999998765532    233334443 334555554 88888 444433


Q ss_pred             ccccCchhhcCCCCCCEEEeecCcCcccc-cccccCCCCCCeEeccCCccccc-CCccCCCCCCCcEEeecC--------
Q 035922          312 IFGSIPPGIGKLVNLRRLYVWNNKLSGTI-PSAIGDLQNLRMLGMSGNRFSGN-IPLSVGNLKMLIQLEVSE--------  381 (581)
Q Consensus       312 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~--------  381 (581)
                      . +.++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +... ++.....+++|++|++.+        
T Consensus       278 ~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~  355 (594)
T 2p1m_B          278 P-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP  355 (594)
T ss_dssp             G-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred             h-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence            2 345665667899999999999977543 333568899999999998 4322 222233588999999944        


Q ss_pred             -cccCCCCccccc-CCCCCcEEECCCCcccccCCcchh-cccCCcceeEcC--C----Ccccc-----cCCccccCCCCC
Q 035922          382 -NFLQGTIPSSLC-QCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLS--R----NHFTG-----SLPIEVGNLKNL  447 (581)
Q Consensus       382 -n~l~~~~p~~l~-~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~~L~Ls--~----n~l~~-----~~p~~l~~l~~L  447 (581)
                       +.+++.....+. .+++|++|.+..|.+++..+..+. .+++| +.|+++  +    +.+++     .++..+..+++|
T Consensus       356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L-~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L  434 (594)
T 2p1m_B          356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM-TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL  434 (594)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC-CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred             CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc-ceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence             344433222232 488999999988998866666555 57888 899999  4    55552     122235678999


Q ss_pred             CeeeccCCcCccccCccccC-CCCCcEEECCCCcCcccCcccc-cCCCCCCEEECCCCccccccch-hhhcCCCCCEEEC
Q 035922          448 GVLDISGNLLSGEIPISLGS-CTSLEKLLMQGNKFYGPIPSSL-RSLRGLSVWDFAQNNLSGEIPK-FLAGFKLLENVNL  524 (581)
Q Consensus       448 ~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~l  524 (581)
                      +.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....+++|++|++
T Consensus       435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM  513 (594)
T ss_dssp             CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred             cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence            9999987 777666666655 8999999999999987665555 6789999999999999765444 4456899999999


Q ss_pred             cCCCCCC
Q 035922          525 SYNDLGA  531 (581)
Q Consensus       525 s~N~l~~  531 (581)
                      ++|+++.
T Consensus       514 ~~~~~~~  520 (594)
T 2p1m_B          514 SSCSVSF  520 (594)
T ss_dssp             ESSCCBH
T ss_pred             eCCCCCH
Confidence            9999853

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.5e-27  Score=234.54  Aligned_cols=242  Identities=19%  Similarity=0.185  Sum_probs=207.6

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +++..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            56777888888776655666778899999999999998888899999999999999999987654  8899999999999


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|.+++..     ..++|++|++++|++.+..+..   ++.+ +.|++++|++++..+..+..+++|++|++++|++++.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSC-EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCC-CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            99998532     3489999999999998655443   5667 8999999999987788899999999999999999987


Q ss_pred             cCccc-cCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-cc
Q 035922          461 IPISL-GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EG  538 (581)
Q Consensus       461 ~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~  538 (581)
                      .+..+ ..+++|++|++++|.+.+. +. ...+++|+.|++++|.+++. |..+..+++|++|++++|++++  +|. ..
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~--l~~~~~  234 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL--IEKALR  234 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE--ECTTCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc--hhhHhh
Confidence            77776 4789999999999999865 43 34699999999999999964 5559999999999999999996  554 56


Q ss_pred             ccCCcCcccccCCCCCccCC
Q 035922          539 VIKNSSATSVMGNSKLCGGI  558 (581)
Q Consensus       539 ~~~~l~~l~~~gN~~lcg~~  558 (581)
                      .+++|+.+++++|+..|+.+
T Consensus       235 ~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          235 FSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             CCTTCCEEECTTCCCBHHHH
T ss_pred             cCCCCCEEEccCCCccCcCH
Confidence            78899999999999998754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=6.4e-27  Score=247.62  Aligned_cols=223  Identities=21%  Similarity=0.204  Sum_probs=194.9

Q ss_pred             CCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEE
Q 035922          322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGI  401 (581)
Q Consensus       322 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  401 (581)
                      .+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..     ..++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            34589999999999998888899999999999999999997665  889999999999999998543     23899999


Q ss_pred             ECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCcccc-CCCCCcEEECCCCc
Q 035922          402 NFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLG-SCTSLEKLLMQGNK  480 (581)
Q Consensus       402 ~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~  480 (581)
                      ++++|.+.+..+..   ++.+ +.|++++|.+++..|..++.+++|++|++++|.+++.+|..+. .+++|+.|+|++|.
T Consensus       105 ~L~~N~l~~~~~~~---l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          105 HAANNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             ECCSSCCCCEEECC---CSSC-EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECcCCcCCCCCccc---cCCC-CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            99999998655543   5677 8999999999998898999999999999999999998888886 79999999999999


Q ss_pred             CcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCC
Q 035922          481 FYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIP  559 (581)
Q Consensus       481 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~  559 (581)
                      +++..+  +..+++|+.|++++|.+++..| .+..+++|+.|++++|.+++. .+....+++|+.+++.||++.|+.+|
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchH
Confidence            997633  4469999999999999997554 589999999999999999974 33456788999999999999987653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.3e-25  Score=218.21  Aligned_cols=227  Identities=19%  Similarity=0.149  Sum_probs=161.8

Q ss_pred             EEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCccc
Q 035922          305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL  384 (581)
Q Consensus       305 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  384 (581)
                      ++..+..+. .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            334444443 3444332  4577777777777655555666777777777777777665555667777777777777777


Q ss_pred             CCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCccccc-CCccccCCCCCCeeeccCCcCccccCc
Q 035922          385 QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS-LPIEVGNLKNLGVLDISGNLLSGEIPI  463 (581)
Q Consensus       385 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~  463 (581)
                      ++..+..+..+++|++|++++|.+.+..+..+..++++ ++|++++|++++. +|..+.++++|++|++++|++++..+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            76666667777777777777777765555466677777 7777777777753 577788888888888888888866666


Q ss_pred             cccCCCCCc----EEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCc
Q 035922          464 SLGSCTSLE----KLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE  537 (581)
Q Consensus       464 ~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~  537 (581)
                      .+..+++|+    .|++++|++.+..+..+.. .+|+.|++++|.+++..+..+..+++|++|++++|++.+. .|..
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~-c~~l  243 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CPRI  243 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC-TTTT
T ss_pred             HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc-CCch
Confidence            777666666    8888999888665555443 4799999999999877667778899999999999999887 6644

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.3e-24  Score=212.89  Aligned_cols=209  Identities=20%  Similarity=0.155  Sum_probs=186.1

Q ss_pred             cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922          300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV  379 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  379 (581)
                      +++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            48999999999999877778999999999999999999777778999999999999999999888888999999999999


Q ss_pred             cCcccCCCCcccccCCCCCcEEECCCCcccc-cCCcchhcccCCcceeEcCCCcccccCCccccCCCCCC----eeeccC
Q 035922          380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSG-TIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLG----VLDISG  454 (581)
Q Consensus       380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~  454 (581)
                      ++|.+.+..+..+..+++|++|++++|++.+ .+|..+..++++ +.|++++|++++..+..+..+++|+    +|++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            9999998777789999999999999999985 368999999999 8999999999987777888777777    899999


Q ss_pred             CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccc
Q 035922          455 NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIP  510 (581)
Q Consensus       455 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  510 (581)
                      |++++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|.+.+..|
T Consensus       187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99995555444 45589999999999997777778999999999999999987544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=2.2e-24  Score=212.48  Aligned_cols=205  Identities=23%  Similarity=0.194  Sum_probs=168.4

Q ss_pred             hcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCc
Q 035922          320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLI  399 (581)
Q Consensus       320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  399 (581)
                      ++++++++++++++++++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            567788999999999888 5565543  688999999999987777888889999999999998885433  26788899


Q ss_pred             EEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCC
Q 035922          400 GINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN  479 (581)
Q Consensus       400 ~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  479 (581)
                      +|++++|++. .+|..+..++++ +.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            9999999888 778888888888 88999999888766677888888999999998888666667788888888999888


Q ss_pred             cCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922          480 KFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       480 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      ++.+..+..|..+++|+.|++++|++. .+|..+...++|+++++++|++...
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            888666666788888888899888887 6777777788888888888888653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=8.7e-24  Score=206.27  Aligned_cols=204  Identities=22%  Similarity=0.207  Sum_probs=113.6

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      ..+.++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|++++|.+++..+..|..          
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~----------   83 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE----------   83 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS----------
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC----------
Confidence            3455555555555 2333222  34555555555555443344455555555555555544333333344          


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                                    +++|++|++++|++.+..+..+..+++| +.|++++|++++..+..+..+++|++|++++|++++.
T Consensus        84 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  148 (270)
T 2o6q_A           84 --------------LKNLETLWVTDNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL  148 (270)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             --------------CCCCCEEECCCCcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence                          4444444444444443223333444455 5555555555544445556666666666666666644


Q ss_pred             cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      .+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus       149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            444566666777777777766655555566677777777777777655555566677777777777776554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.3e-23  Score=205.11  Aligned_cols=204  Identities=18%  Similarity=0.137  Sum_probs=172.1

Q ss_pred             CCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEc
Q 035922          349 NLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDL  428 (581)
Q Consensus       349 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~L  428 (581)
                      ..+.++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|++.+..+..+..++++ ++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L-~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL-ETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC-CEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC-CEEEC
Confidence            4567777777776 4554443  568888888888886666678888899999999998884434445778899 89999


Q ss_pred             CCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccc
Q 035922          429 SRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGE  508 (581)
Q Consensus       429 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~  508 (581)
                      ++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            99999977777789999999999999999988888899999999999999999977777799999999999999999988


Q ss_pred             cchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922          509 IPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       509 ~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      .+..+..+++|++|++++|++++. .+. ...+++|+.+++.+||+.|+.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCCeeCCC
Confidence            778899999999999999999874 332 466889999999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.3e-23  Score=206.93  Aligned_cols=200  Identities=22%  Similarity=0.198  Sum_probs=174.9

Q ss_pred             cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922          300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV  379 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  379 (581)
                      +++++++++++.++ .+|..+.  +++++|++++|++++..+..+..+++|++|++++|.+++..+  ...+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred             CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence            38999999999998 5665553  689999999999998888899999999999999999986443  278899999999


Q ss_pred             cCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcc
Q 035922          380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG  459 (581)
Q Consensus       380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  459 (581)
                      ++|+++ .+|..+..+++|++|++++|++++..+..+..+++| +.|++++|++++..+..|..+++|+.|++++|++++
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            999998 678888899999999999999996666788899999 899999999997777778899999999999999996


Q ss_pred             ccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922          460 EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG  507 (581)
Q Consensus       460 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  507 (581)
                      ..+..+..+++|+.|++++|++. .+|..+..++.|+.+++++|.+..
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            65666788999999999999998 678888888999999999998864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=8.7e-24  Score=206.46  Aligned_cols=203  Identities=20%  Similarity=0.190  Sum_probs=136.4

Q ss_pred             cCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcE
Q 035922          321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIG  400 (581)
Q Consensus       321 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  400 (581)
                      ..+++|+.|++++|.++. + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            445556666666665552 2 235556666666666666553 2 24556666666666666666555555566666666


Q ss_pred             EECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCc
Q 035922          401 INFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK  480 (581)
Q Consensus       401 L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  480 (581)
                      |++++|++.+..+..+..+++| +.|++++|++++..+..+..+++|++|++++|++++..+..++.+++|+.|++++|+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            6666666664444455666666 677777777775555556777788888888888876666667778888888888888


Q ss_pred             CcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922          481 FYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT  536 (581)
Q Consensus       481 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~  536 (581)
                      +.+..|..+..+++|+.|++++|.+.+.       ++.|+.+++++|.++|. +|.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~-ip~  240 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV-VRN  240 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGG-BBC
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCc-ccC
Confidence            8877777777888888888888877654       34677788888888887 775

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=4.1e-24  Score=212.99  Aligned_cols=223  Identities=17%  Similarity=0.169  Sum_probs=148.8

Q ss_pred             CCcEEEccCCccccc----CchhhcCCCCCCEEEeecCcCcccccccc--cCCCCCCeEeccCCcccccCC----ccCCC
Q 035922          301 TLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNNKLSGTIPSAI--GDLQNLRMLGMSGNRFSGNIP----LSVGN  370 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~----~~~~~  370 (581)
                      .++.+.+.++.+...    +.. +..+++|++|++++|++++..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            466677766665422    111 1234568888888888887777776  778888888888888776444    23446


Q ss_pred             CCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccccc--C--CcchhcccCCcceeEcCCCcccccCCc----ccc
Q 035922          371 LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGT--I--PPQLFGLSSLSISLDLSRNHFTGSLPI----EVG  442 (581)
Q Consensus       371 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~--~--p~~~~~l~~L~~~L~Ls~n~l~~~~p~----~l~  442 (581)
                      +++|++|++++|++.+..+..+..+++|++|++++|++.+.  +  +..+..+++| ++|++++|+++ .++.    .+.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI-QNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC-CSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC-CEEECCCCCCC-chHHHHHHHHh
Confidence            77888888888888777777777888888888888876532  2  2223456666 67777777775 2222    235


Q ss_pred             CCCCCCeeeccCCcCccccCccccCC---CCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCC
Q 035922          443 NLKNLGVLDISGNLLSGEIPISLGSC---TSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLL  519 (581)
Q Consensus       443 ~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L  519 (581)
                      .+++|++|++++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.||+++|++++. |. +..+++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            66777777777777776666666655   57777777777777 5565553  6777777777777653 33 5666777


Q ss_pred             CEEECcCCCCCC
Q 035922          520 ENVNLSYNDLGA  531 (581)
Q Consensus       520 ~~L~ls~N~l~~  531 (581)
                      ++|++++|+++.
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            777777777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.1e-24  Score=210.88  Aligned_cols=205  Identities=24%  Similarity=0.236  Sum_probs=141.8

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +|+.|++++|.+.. ++ .+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            67777777777663 22 366677777777777777642  356677777777777777776666666777777777777


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|++++..+..+..+++|++|++++|++.+..+..+..+++| +.|++++|++++..+..+..+++|++|++++|++++.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            777776666666777777777777777775445555667777 6777777777765555567777777777777777766


Q ss_pred             cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK  517 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~  517 (581)
                      .+..+..+++|+.|++++|++.+.       ++.|+.|+++.|.++|.+|.++..++
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            666667777777777777776633       44567777777777777776665443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=3.6e-25  Score=225.65  Aligned_cols=251  Identities=18%  Similarity=0.154  Sum_probs=193.9

Q ss_pred             EeccCCcCcccCchhhhhcccCCcEEEccCCcccccCc----hhhcCCC-CCCEEEeecCcCcccccccccCC-----CC
Q 035922          280 LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIP----PGIGKLV-NLRRLYVWNNKLSGTIPSAIGDL-----QN  349 (581)
Q Consensus       280 l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~  349 (581)
                      ..++.|.+++.+|+.+... ++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4567777777777765554 379999999999987766    6778888 89999999999987767666654     89


Q ss_pred             CCeEeccCCcccccCCccC----CCC-CCCcEEeecCcccCCCCcccc----cC-CCCCcEEECCCCcccccC----Ccc
Q 035922          350 LRMLGMSGNRFSGNIPLSV----GNL-KMLIQLEVSENFLQGTIPSSL----CQ-CKSLIGINFSKNNLSGTI----PPQ  415 (581)
Q Consensus       350 L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~ls~n~l~~~~----p~~  415 (581)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|++.+..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999987665543    344 899999999999987665443    33 469999999999998543    344


Q ss_pred             hhccc-CCcceeEcCCCcccccCCcccc----CC-CCCCeeeccCCcCccc----cCccccC-CCCCcEEECCCCcCccc
Q 035922          416 LFGLS-SLSISLDLSRNHFTGSLPIEVG----NL-KNLGVLDISGNLLSGE----IPISLGS-CTSLEKLLMQGNKFYGP  484 (581)
Q Consensus       416 ~~~l~-~L~~~L~Ls~n~l~~~~p~~l~----~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~n~l~~~  484 (581)
                      +...+ ++ +.|++++|++++..+..+.    .+ ++|++|+|++|++++.    ++..+.. .++|++|+|++|++.+.
T Consensus       162 l~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          162 LAAIPANV-NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHTSCTTC-CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HhcCCccc-cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            45555 77 8999999999877665444    44 5999999999999852    4555655 45999999999999876


Q ss_pred             Cc----ccccCCCCCCEEECCCCccccc-------cchhhhcCCCCCEEECcCCCCCCC
Q 035922          485 IP----SSLRSLRGLSVWDFAQNNLSGE-------IPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       485 ~p----~~l~~l~~L~~L~ls~n~l~~~-------~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      .+    ..+..+++|+.|++++|.+.+.       ++..+..+++|++||+++|++...
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            54    3456779999999999985443       334567788899999999998765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=5.3e-25  Score=226.59  Aligned_cols=240  Identities=17%  Similarity=0.182  Sum_probs=191.2

Q ss_pred             CchhhhhcccCCcEEEccCCcccccCc----hhhcCCCCCCEEEeecC---cCcccccccc-------cCCCCCCeEecc
Q 035922          291 IPECISNFSTTLASLFLDNNKIFGSIP----PGIGKLVNLRRLYVWNN---KLSGTIPSAI-------GDLQNLRMLGMS  356 (581)
Q Consensus       291 ~p~~~~~~~~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~l~~~~~~~l-------~~l~~L~~L~Ls  356 (581)
                      ++..+..+. +|++|++++|.+++..+    ..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+++
T Consensus        24 l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            444555554 78999999998876533    34668899999999986   4455555544       688999999999


Q ss_pred             CCcccc----cCCccCCCCCCCcEEeecCcccCCCCcccc----cCC---------CCCcEEECCCCccc-ccCC---cc
Q 035922          357 GNRFSG----NIPLSVGNLKMLIQLEVSENFLQGTIPSSL----CQC---------KSLIGINFSKNNLS-GTIP---PQ  415 (581)
Q Consensus       357 ~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~ls~n~l~-~~~p---~~  415 (581)
                      +|.+++    .++..+..+++|++|++++|.++...+..+    ..+         ++|++|++++|++. +.++   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            999886    356677888999999999998865433333    333         89999999999987 4455   46


Q ss_pred             hhcccCCcceeEcCCCcccc-----cCCccccCCCCCCeeeccCCcCc----cccCccccCCCCCcEEECCCCcCccc--
Q 035922          416 LFGLSSLSISLDLSRNHFTG-----SLPIEVGNLKNLGVLDISGNLLS----GEIPISLGSCTSLEKLLMQGNKFYGP--  484 (581)
Q Consensus       416 ~~~l~~L~~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~--  484 (581)
                      +..+++| +.|++++|+++.     ..+..+..+++|++|+|++|.++    +.+|..+..+++|+.|+|++|.+.+.  
T Consensus       183 l~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          183 FQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            6678888 899999999883     34447888999999999999996    57888899999999999999999866  


Q ss_pred             --CcccccC--CCCCCEEECCCCcccc----ccchhh-hcCCCCCEEECcCCCCCCC
Q 035922          485 --IPSSLRS--LRGLSVWDFAQNNLSG----EIPKFL-AGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       485 --~p~~l~~--l~~L~~L~ls~n~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~  532 (581)
                        ++..+..  +++|+.|++++|.+++    .+|..+ .++++|++|++++|++++.
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence              5666644  8999999999999998    488877 6789999999999999986

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=209.86  Aligned_cols=224  Identities=17%  Similarity=0.169  Sum_probs=186.6

Q ss_pred             CCCCEEEeecCcCcccccc---cccCCCCCCeEeccCCcccccCCccC--CCCCCCcEEeecCcccCCCCc----ccccC
Q 035922          324 VNLRRLYVWNNKLSGTIPS---AIGDLQNLRMLGMSGNRFSGNIPLSV--GNLKMLIQLEVSENFLQGTIP----SSLCQ  394 (581)
Q Consensus       324 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~  394 (581)
                      ..++.+.+.++.++.....   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4688999998887632111   12245779999999999999999888  889999999999999997655    34457


Q ss_pred             CCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCccccc--C--CccccCCCCCCeeeccCCcCccccCc----ccc
Q 035922          395 CKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS--L--PIEVGNLKNLGVLDISGNLLSGEIPI----SLG  466 (581)
Q Consensus       395 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~--~--p~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~  466 (581)
                      +++|++|++++|++.+..+..+..+++| ++|++++|++.+.  +  +..+..+++|++|++++|+++ .++.    .++
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPAL-TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTC-CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCC-CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            9999999999999997778889999999 9999999998753  2  233478999999999999997 3333    357


Q ss_pred             CCCCCcEEECCCCcCcccCcccccCC---CCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCc
Q 035922          467 SCTSLEKLLMQGNKFYGPIPSSLRSL---RGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNS  543 (581)
Q Consensus       467 ~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l  543 (581)
                      .+++|++|+|++|++.+.+|..+..+   ++|+.|++++|+++ .+|..+.  ++|++|++++|++++  +|....+++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~--~~~~~~l~~L  296 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR--APQPDELPEV  296 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS--CCCTTSCCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC--CchhhhCCCc
Confidence            88999999999999998888877777   69999999999999 6777664  899999999999997  4556778999


Q ss_pred             CcccccCCCCC
Q 035922          544 SATSVMGNSKL  554 (581)
Q Consensus       544 ~~l~~~gN~~l  554 (581)
                      +.+++++|+.-
T Consensus       297 ~~L~L~~N~l~  307 (310)
T 4glp_A          297 DNLTLDGNPFL  307 (310)
T ss_dssp             SCEECSSTTTS
T ss_pred             cEEECcCCCCC
Confidence            99999999853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=4.3e-24  Score=215.46  Aligned_cols=226  Identities=15%  Similarity=0.157  Sum_probs=123.4

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccc-ccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGT-IPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV  379 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  379 (581)
                      .++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            566666666666655444 34556666666666666543 5555566666666666666665555555555666666666


Q ss_pred             cCc-ccCCC-CcccccCCCCCcEEECCCC-ccccc-CCcchhccc-CCcceeEcCCC--ccc-ccCCccccCCCCCCeee
Q 035922          380 SEN-FLQGT-IPSSLCQCKSLIGINFSKN-NLSGT-IPPQLFGLS-SLSISLDLSRN--HFT-GSLPIEVGNLKNLGVLD  451 (581)
Q Consensus       380 ~~n-~l~~~-~p~~l~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~  451 (581)
                      ++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +| ++|++++|  .++ +.++..+.++++|++|+
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            666 44432 4444555666666666666 55533 445555555 55 56666666  333 23444555566666666


Q ss_pred             ccCCc-CccccCccccCCCCCcEEECCCCc-CcccCcccccCCCCCCEEECCCCccccccchhhhcC-CCCCEEECcCCC
Q 035922          452 ISGNL-LSGEIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF-KLLENVNLSYND  528 (581)
Q Consensus       452 Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~ls~N~  528 (581)
                      +++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +...   .+..+ ..++.|++++|+
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence            66665 454555555566666666666663 22111124555666666666665 3221   12222 124444456666


Q ss_pred             CCCC
Q 035922          529 LGAR  532 (581)
Q Consensus       529 l~~~  532 (581)
                      +++.
T Consensus       305 l~~~  308 (336)
T 2ast_B          305 FTTI  308 (336)
T ss_dssp             SCCT
T ss_pred             Cccc
Confidence            6655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=7.9e-25  Score=225.30  Aligned_cols=206  Identities=19%  Similarity=0.200  Sum_probs=139.7

Q ss_pred             cCCCCCCEEEeecCcCcc----cccccccCCCCCCeEeccCCcccccCCccC----CCC---------CCCcEEeecCcc
Q 035922          321 GKLVNLRRLYVWNNKLSG----TIPSAIGDLQNLRMLGMSGNRFSGNIPLSV----GNL---------KMLIQLEVSENF  383 (581)
Q Consensus       321 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~  383 (581)
                      ..+++|++|+|++|++++    .++..+..+++|++|++++|.+++..+..+    ..+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            455666666666666654    345555566666666666666543322222    222         677777777777


Q ss_pred             cC-CCCc---ccccCCCCCcEEECCCCcccc-----cCCcchhcccCCcceeEcCCCccc----ccCCccccCCCCCCee
Q 035922          384 LQ-GTIP---SSLCQCKSLIGINFSKNNLSG-----TIPPQLFGLSSLSISLDLSRNHFT----GSLPIEVGNLKNLGVL  450 (581)
Q Consensus       384 l~-~~~p---~~l~~l~~L~~L~ls~n~l~~-----~~p~~~~~l~~L~~~L~Ls~n~l~----~~~p~~l~~l~~L~~L  450 (581)
                      ++ +.++   ..+..+++|++|++++|++..     ..+..+..+++| +.|++++|.++    +.+|..+..+++|++|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-cEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            76 3333   355567788888888887762     233367777888 78888888885    5677778888899999


Q ss_pred             eccCCcCccc----cCcccc--CCCCCcEEECCCCcCcc----cCcccc-cCCCCCCEEECCCCccccccc--hhh-hcC
Q 035922          451 DISGNLLSGE----IPISLG--SCTSLEKLLMQGNKFYG----PIPSSL-RSLRGLSVWDFAQNNLSGEIP--KFL-AGF  516 (581)
Q Consensus       451 ~Ls~n~l~~~----~p~~l~--~l~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~L~ls~n~l~~~~p--~~l-~~l  516 (581)
                      +|++|++++.    ++..+.  .+++|+.|+|++|.+.+    .+|..+ .++++|+.|++++|.+++..+  ..+ ..+
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l  329 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF  329 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence            9999988765    556663  38899999999999987    477777 668999999999999987664  222 334


Q ss_pred             CCCCEEECcCC
Q 035922          517 KLLENVNLSYN  527 (581)
Q Consensus       517 ~~L~~L~ls~N  527 (581)
                      +.++.+++..+
T Consensus       330 ~~~~~~~l~~~  340 (386)
T 2ca6_A          330 STRGRGELDEL  340 (386)
T ss_dssp             HHHTCCEECCC
T ss_pred             hhcCcchhhhc
Confidence            55554555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.1e-23  Score=212.47  Aligned_cols=250  Identities=15%  Similarity=0.146  Sum_probs=207.7

Q ss_pred             CCcEEEccCCcccccCchhhcCC--CCCCEEEeecCcCcccccccccCCCCCCeEeccCCccccc-CCccCCCCCCCcEE
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKL--VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN-IPLSVGNLKMLIQL  377 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  377 (581)
                      .++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            5889999998876   4556666  8999999999999977665 56799999999999998865 77788899999999


Q ss_pred             eecCcccCCCCcccccCCCCCcEEECCCC-cccc-cCCcchhcccCCcceeEcCCC-ccccc-CCccccCCC-CCCeeec
Q 035922          378 EVSENFLQGTIPSSLCQCKSLIGINFSKN-NLSG-TIPPQLFGLSSLSISLDLSRN-HFTGS-LPIEVGNLK-NLGVLDI  452 (581)
Q Consensus       378 ~L~~n~l~~~~p~~l~~l~~L~~L~ls~n-~l~~-~~p~~~~~l~~L~~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L~L  452 (581)
                      ++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++| ++|++++| .+++. ++..+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-DELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC-CEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC-CEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            99999999888888999999999999999 6775 367778889999 99999999 99864 677788999 9999999


Q ss_pred             cCC--cCc-cccCccccCCCCCcEEECCCCc-CcccCcccccCCCCCCEEECCCCc-cccccchhhhcCCCCCEEECcCC
Q 035922          453 SGN--LLS-GEIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSLRGLSVWDFAQNN-LSGEIPKFLAGFKLLENVNLSYN  527 (581)
Q Consensus       453 s~n--~l~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~n~-l~~~~p~~l~~l~~L~~L~ls~N  527 (581)
                      ++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999  565 4677788899999999999999 777888899999999999999995 33333336889999999999999


Q ss_pred             CCCCCCCCCcccc-CCcCcccccCCCCCccCCCC
Q 035922          528 DLGARYVPTEGVI-KNSSATSVMGNSKLCGGIPK  560 (581)
Q Consensus       528 ~l~~~~ip~~~~~-~~l~~l~~~gN~~lcg~~~~  560 (581)
                       +...   ....+ ..++.+++.+|. +.+..|.
T Consensus       283 -i~~~---~~~~l~~~l~~L~l~~n~-l~~~~~~  311 (336)
T 2ast_B          283 -VPDG---TLQLLKEALPHLQINCSH-FTTIARP  311 (336)
T ss_dssp             -SCTT---CHHHHHHHSTTSEESCCC-SCCTTCS
T ss_pred             -cCHH---HHHHHHhhCcceEEeccc-CccccCC
Confidence             4432   12233 347788888776 6765553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=2.6e-24  Score=219.25  Aligned_cols=259  Identities=14%  Similarity=0.140  Sum_probs=150.1

Q ss_pred             EEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCc----ccCcCCC-CCCEEEccCCcCcccCCcccCCC-----CC
Q 035922           99 RLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIP----ATMSRCS-NIILMDLSVNQLLGNIPPEFGSL-----SK  168 (581)
Q Consensus        99 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~  168 (581)
                      ++++++|.+++.+|+.+...++|++|+|++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45677788877777776666778888888887776555    5666777 77777777777776655555443     67


Q ss_pred             CCEEECCCCcccccCCccC----cCC-CCCcEEEccCCCCCCcCCCccC----C-CCcccccccCCccCCCCCCccccCC
Q 035922          169 IKDLRSFMNNLTGSIPSSL----GNL-SSIIRLSLTYNNIARSIPDTLG----Y-LENLSFLSLGGNMLSGTIPSSIFNR  238 (581)
Q Consensus       169 L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~l~~n~l~~~~p~~l~----~-l~~L~~L~l~~n~l~~~~p~~l~~l  238 (581)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.++          
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----------  151 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG----------  151 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG----------
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC----------
Confidence            7777777777665544432    223 5666666666666544332221    1 124444444444443          


Q ss_pred             CCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCch
Q 035922          239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP  318 (581)
Q Consensus       239 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~  318 (581)
                                    +.....+                                +..+....++|++|++++|.+++..+.
T Consensus       152 --------------~~~~~~l--------------------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~  185 (362)
T 3goz_A          152 --------------IKSSDEL--------------------------------IQILAAIPANVNSLNLRGNNLASKNCA  185 (362)
T ss_dssp             --------------GSCHHHH--------------------------------HHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred             --------------HHHHHHH--------------------------------HHHHhcCCccccEeeecCCCCchhhHH
Confidence                          2211111                                111222223566666666666655443


Q ss_pred             h----hcCC-CCCCEEEeecCcCccc----ccccccC-CCCCCeEeccCCcccccCC----ccCCCCCCCcEEeecCccc
Q 035922          319 G----IGKL-VNLRRLYVWNNKLSGT----IPSAIGD-LQNLRMLGMSGNRFSGNIP----LSVGNLKMLIQLEVSENFL  384 (581)
Q Consensus       319 ~----l~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l  384 (581)
                      .    +..+ ++|++|++++|++++.    ++..+.. .++|++|++++|.+++..+    ..+..+++|++|++++|.+
T Consensus       186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence            3    3334 4777777777776642    3444444 3477777777777764332    2345567777777777774


Q ss_pred             CCCC-------cccccCCCCCcEEECCCCcccccCC
Q 035922          385 QGTI-------PSSLCQCKSLIGINFSKNNLSGTIP  413 (581)
Q Consensus       385 ~~~~-------p~~l~~l~~L~~L~ls~n~l~~~~p  413 (581)
                      .+..       +..+..+++|++|++++|++.+..+
T Consensus       266 ~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          266 KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             cccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            4332       2345566667777777777665433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=6.2e-23  Score=196.41  Aligned_cols=201  Identities=15%  Similarity=0.106  Sum_probs=108.5

Q ss_pred             CCCCEEEeecCcCcccccccccCCCCCCeEeccCCc-ccccCCccCCCCCCCcEEeecC-cccCCCCcccccCCCCCcEE
Q 035922          324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR-FSGNIPLSVGNLKMLIQLEVSE-NFLQGTIPSSLCQCKSLIGI  401 (581)
Q Consensus       324 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L  401 (581)
                      ++|++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            367777777777775555566677777777777775 6654455666667777777776 66665555556666666666


Q ss_pred             ECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCC-cCccccCccccCCCCCc-EEECCCC
Q 035922          402 NFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGN-LLSGEIPISLGSCTSLE-KLLMQGN  479 (581)
Q Consensus       402 ~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~Ls~n  479 (581)
                      ++++|++++ +|. +..++++ +                     .|++|++++| ++++..+..|..+++|+ .|++++|
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L-~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYST-D---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBC-C---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             eCCCCCCcc-ccc-ccccccc-c---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence            666666652 443 4444444 3                     0014455544 44433333444555555 5555555


Q ss_pred             cCcccCcccccCCCCCCEEECCCCc-cccccchhhhcC-CCCCEEECcCCCCCCCCCCCccccCCcCcccccCCC
Q 035922          480 KFYGPIPSSLRSLRGLSVWDFAQNN-LSGEIPKFLAGF-KLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNS  552 (581)
Q Consensus       480 ~l~~~~p~~l~~l~~L~~L~ls~n~-l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~  552 (581)
                      ++....+..+.. ++|+.|++++|+ +++..+..|..+ ++|++|++++|++++  +|.. .+++++.+.+.+++
T Consensus       167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~--l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC--CCCT-TCTTCSEEECTTC-
T ss_pred             CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc--CChh-HhccCceeeccCcc
Confidence            554222222222 455555555552 544444445555 555555555555543  3332 45555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.1e-22  Score=194.65  Aligned_cols=203  Identities=19%  Similarity=0.237  Sum_probs=139.0

Q ss_pred             cCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCc-CcccccccccCCCCCCeEeccC-CcccccCCcc
Q 035922          290 LIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK-LSGTIPSAIGDLQNLRMLGMSG-NRFSGNIPLS  367 (581)
Q Consensus       290 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~  367 (581)
                      .+|. +.   +++++|++++|++++..+..+..+++|++|++++|+ +++..+..|..+++|++|++++ |.+++..+..
T Consensus        25 ~ip~-~~---~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           25 RIPS-LP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             SCCC-CC---TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccCC-CC---CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            4565 33   489999999999998777789999999999999997 8866667899999999999999 9999777788


Q ss_pred             CCCCCCCcEEeecCcccCCCCcccccCCCCCc---EEECCCC-cccccCCcchhcccCCcc-eeEcCCCcccccCCcccc
Q 035922          368 VGNLKMLIQLEVSENFLQGTIPSSLCQCKSLI---GINFSKN-NLSGTIPPQLFGLSSLSI-SLDLSRNHFTGSLPIEVG  442 (581)
Q Consensus       368 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~ls~n-~l~~~~p~~~~~l~~L~~-~L~Ls~n~l~~~~p~~l~  442 (581)
                      |.++++|++|++++|++++ +|. +..+++|+   +|++++| .+.+..+..+..++.+ + .|++++|+++ .+|... 
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-~~~L~l~~n~l~-~i~~~~-  175 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFT-SVQGYA-  175 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-EEEEECCSCCCC-EECTTT-
T ss_pred             hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-eeEEEcCCCCCc-ccCHhh-
Confidence            9999999999999999996 665 77788777   7777777 6653333334445555 4 5555555554 233222 


Q ss_pred             CCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCc-CcccCcccccCC-CCCCEEECCCCccccccchhhhcCCCCC
Q 035922          443 NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSL-RGLSVWDFAQNNLSGEIPKFLAGFKLLE  520 (581)
Q Consensus       443 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~ls~n~l~~~~p~~l~~l~~L~  520 (581)
                                            + ..++|+.|++++|+ +.+..+..|..+ ++|+.|++++|++++ +|..  .+++|+
T Consensus       176 ----------------------~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~  229 (239)
T 2xwt_C          176 ----------------------F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLK  229 (239)
T ss_dssp             ----------------------T-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCS
T ss_pred             ----------------------c-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCc
Confidence                                  2 22455555555553 444334445555 555555555555553 2222  345555


Q ss_pred             EEECcCC
Q 035922          521 NVNLSYN  527 (581)
Q Consensus       521 ~L~ls~N  527 (581)
                      .|+++++
T Consensus       230 ~L~l~~~  236 (239)
T 2xwt_C          230 ELIARNT  236 (239)
T ss_dssp             EEECTTC
T ss_pred             eeeccCc
Confidence            5555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=7.1e-22  Score=190.47  Aligned_cols=159  Identities=18%  Similarity=0.156  Sum_probs=93.4

Q ss_pred             CCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeec
Q 035922          373 MLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI  452 (581)
Q Consensus       373 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  452 (581)
                      +++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++| +.|++++|++++..+..+..+++|++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEECCCCcccccChhHhcccCCCCEEEc
Confidence            44444444444444444444444555555555555544444444445555 55555555555444445556666666666


Q ss_pred             cCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922          453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       453 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      ++|++++..+..+..+++|++|++++|++.+..+..|..+++|+.|++++|++.+..+..+..+++|++|++++|++.+.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66666644444556666677777777766655555666667777777777777666666666677777777777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=4.3e-22  Score=197.99  Aligned_cols=190  Identities=23%  Similarity=0.314  Sum_probs=93.1

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +|++|++++|.+.. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECC
Confidence            55555555555543 23 35555555555555555553222  5555555555555555543 2 234455555555555


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|++++. +. +..+++|++|++++|++.                         +..+  +..+++|++|++++|++++ 
T Consensus       116 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-------------------------~~~~--l~~l~~L~~L~l~~n~l~~-  165 (308)
T 1h6u_A          116 STQITDV-TP-LAGLSNLQVLYLDLNQIT-------------------------NISP--LAGLTNLQYLSIGNAQVSD-  165 (308)
T ss_dssp             TSCCCCC-GG-GTTCTTCCEEECCSSCCC-------------------------CCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred             CCCCCCc-hh-hcCCCCCCEEECCCCccC-------------------------cCcc--ccCCCCccEEEccCCcCCC-
Confidence            5555432 21 444555555555555544                         2211  4444555555555555542 


Q ss_pred             cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      ++. +..+++|+.|++++|++.+..+  +..+++|+.|++++|.+.+..|  +..+++|++|++++|++++
T Consensus       166 ~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            222 4455555555555555543222  4455555555555555543332  4555555555555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.9e-21  Score=187.52  Aligned_cols=159  Identities=17%  Similarity=0.127  Sum_probs=99.7

Q ss_pred             CCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEc
Q 035922          349 NLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDL  428 (581)
Q Consensus       349 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~L  428 (581)
                      +++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++| ++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-DKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-CEEEc
Confidence            44445555555444444444455555555555555554444445555555555555555553334444555555 56666


Q ss_pred             CCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccc
Q 035922          429 SRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGE  508 (581)
Q Consensus       429 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~  508 (581)
                      ++|++++..+..+..+++|++|++++|++++..+..|+.+++|+.|+|++|++.+..+..+..+++|+.|++++|.+...
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66666644444566777777777777777755555677778888888888888766666777888888888888887665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=5.6e-21  Score=189.87  Aligned_cols=206  Identities=20%  Similarity=0.288  Sum_probs=144.5

Q ss_pred             EcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCC
Q 035922          245 SVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLV  324 (581)
Q Consensus       245 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~  324 (581)
                      .+..+.+.+.+...   .+++|+.|++.+|.+..            +| .+..+. +|++|++++|.+.+.. . +..++
T Consensus        25 ~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~------------l~-~~~~l~-~L~~L~L~~n~i~~~~-~-~~~l~   85 (308)
T 1h6u_A           25 AAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT------------IE-GVQYLN-NLIGLELKDNQITDLA-P-LKNLT   85 (308)
T ss_dssp             HTTCSSTTSEECHH---HHHTCCEEECTTSCCCC------------CT-TGGGCT-TCCEEECCSSCCCCCG-G-GTTCC
T ss_pred             HhCCCCcCceecHH---HcCCcCEEEeeCCCccC------------ch-hhhccC-CCCEEEccCCcCCCCh-h-HccCC
Confidence            34455554433322   26778887777766542            22 355554 9999999999998654 4 89999


Q ss_pred             CCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECC
Q 035922          325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFS  404 (581)
Q Consensus       325 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  404 (581)
                      +|++|++++|++++. + .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        86 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~  159 (308)
T 1h6u_A           86 KITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG  159 (308)
T ss_dssp             SCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred             CCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence            999999999999853 3 688999999999999999863 3 38899999999999999986543  7788888888888


Q ss_pred             CCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCc
Q 035922          405 KNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY  482 (581)
Q Consensus       405 ~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  482 (581)
                      +|++.+ ++. +..++++ +.|++++|++++..+  +..+++|++|++++|++++..  .+..+++|+.|++++|+++
T Consensus       160 ~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          160 NAQVSD-LTP-LANLSKL-TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             SSCCCC-CGG-GTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CCcCCC-Chh-hcCCCCC-CEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            888773 333 5566666 666666666663222  555566666666666655332  2455555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=6.2e-21  Score=193.27  Aligned_cols=235  Identities=18%  Similarity=0.154  Sum_probs=132.1

Q ss_pred             cCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccccc-ccccCCCCCCe-EeccCCcc
Q 035922          283 NDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRM-LGMSGNRF  360 (581)
Q Consensus       283 ~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~Ls~n~l  360 (581)
                      +++.++ .+|..+.   +++++|+|++|+++...+..|.++++|++|+|++|++.+.+| .+|.+++++++ +.+.+|++
T Consensus        17 ~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           17 QESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             ESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred             cCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence            333443 3454442   366777777777764444456667777777777776654443 34566666554 44455666


Q ss_pred             cccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCC-CcccccCCcchhcccCCcceeEcCCCcccccCCc
Q 035922          361 SGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSK-NNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI  439 (581)
Q Consensus       361 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~  439 (581)
                      +...|..|..+++|++|++++|++++..+..+....++..+++.+ +++...-+..+..+...++.|++++|+|+ .+|.
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~  171 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN  171 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh
Confidence            655566666677777777777776655555555555666666644 34442222334444432256666666666 3444


Q ss_pred             cccCCCCCCeeeccC-CcCccccC-ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922          440 EVGNLKNLGVLDISG-NLLSGEIP-ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK  517 (581)
Q Consensus       440 ~l~~l~~L~~L~Ls~-n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~  517 (581)
                      ......+|++|++++ |.++ .+| ..|..+++|++|++++|+++. +|.  ..+.+|+.|.+.++.-...+|. +.+++
T Consensus       172 ~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~  246 (350)
T 4ay9_X          172 SAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLPT-LEKLV  246 (350)
T ss_dssp             TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred             hhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCCC-chhCc
Confidence            444455666666654 4444 343 345666666666666666663 332  1234455555555444445553 56666


Q ss_pred             CCCEEECcCC
Q 035922          518 LLENVNLSYN  527 (581)
Q Consensus       518 ~L~~L~ls~N  527 (581)
                      +|+.++++++
T Consensus       247 ~L~~l~l~~~  256 (350)
T 4ay9_X          247 ALMEASLTYP  256 (350)
T ss_dssp             SCCEEECSCH
T ss_pred             ChhhCcCCCC
Confidence            6666666553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=3.5e-20  Score=187.78  Aligned_cols=243  Identities=19%  Similarity=0.213  Sum_probs=185.3

Q ss_pred             cEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCch-hh
Q 035922          242 TTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP-GI  320 (581)
Q Consensus       242 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~-~l  320 (581)
                      ++++.++++++ .+|..+   .+++++|++++|++++           .-+..+.++. +|++|+|++|.+.+.+|. .|
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~-----------i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f   75 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRV-----------IQKGAFSGFG-DLEKIEISQNDVLEVIEADVF   75 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSE-----------ECTTSSTTCT-TCCEEEEECCTTCCEECTTSB
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCC-----------cCHHHHcCCC-CCCEEECcCCCCCCccChhHh
Confidence            67888888887 667655   4578887777766542           2223455554 999999999998776654 57


Q ss_pred             cCCCCCCE-EEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecC-cccCCCCcccccCCC-C
Q 035922          321 GKLVNLRR-LYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE-NFLQGTIPSSLCQCK-S  397 (581)
Q Consensus       321 ~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~  397 (581)
                      .+++++++ +.++.|++++..|..|..+++|++|++++|.+.+..+..+....++..+++.+ +.+....+..+..+. .
T Consensus        76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~  155 (350)
T 4ay9_X           76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE  155 (350)
T ss_dssp             CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence            88888775 66677899987788999999999999999999877666777778888999876 456655555666654 6


Q ss_pred             CcEEECCCCcccccCCcchhcccCCcceeEcCC-CcccccCC-ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEE
Q 035922          398 LIGINFSKNNLSGTIPPQLFGLSSLSISLDLSR-NHFTGSLP-IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLL  475 (581)
Q Consensus       398 L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~-n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  475 (581)
                      +++|++++|+++ .+|...+...++ +.+++++ |.++ .+| ..|..+++|++||+++|+++ .+|..  .+..|+.|.
T Consensus       156 l~~L~L~~N~i~-~i~~~~f~~~~L-~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~  229 (350)
T 4ay9_X          156 SVILWLNKNGIQ-EIHNSAFNGTQL-DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLR  229 (350)
T ss_dssp             CEEEECCSSCCC-EECTTSSTTEEE-EEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEE
T ss_pred             hhhhcccccccc-CCChhhccccch-hHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhh
Confidence            889999999998 677777777788 7899985 5666 555 56789999999999999999 55542  356677777


Q ss_pred             CCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922          476 MQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG  507 (581)
Q Consensus       476 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  507 (581)
                      +.++.-...+|. +..+++|+.++++++.-..
T Consensus       230 ~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~c~  260 (350)
T 4ay9_X          230 ARSTYNLKKLPT-LEKLVALMEASLTYPSHCC  260 (350)
T ss_dssp             CTTCTTCCCCCC-TTTCCSCCEEECSCHHHHH
T ss_pred             hccCCCcCcCCC-chhCcChhhCcCCCCcccc
Confidence            666655557774 7899999999998875443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=3e-20  Score=198.24  Aligned_cols=189  Identities=26%  Similarity=0.310  Sum_probs=144.0

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +++.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            78888888888876 66544  377888888888888 566   456888888888888886 666 554  88888888


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|.+++ +|.   .+++|++|++++|++++ +|.   .+++| +.|++++|++++ +|. +.  ++|+.|+|++|+|+ .
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            888886 555   57888888888888874 665   45666 788888888885 666 55  78888888888888 6


Q ss_pred             cCccccCCCCC-------cEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCC
Q 035922          461 IPISLGSCTSL-------EKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL  518 (581)
Q Consensus       461 ~p~~l~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  518 (581)
                      +|. +..  +|       +.|+|++|+++ .+|..+..+++|+.|++++|.+++.+|..+..++.
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            666 544  66       88888888887 57777777888888888888888888887776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=2.8e-20  Score=173.79  Aligned_cols=157  Identities=20%  Similarity=0.227  Sum_probs=98.9

Q ss_pred             CCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEE
Q 035922           94 LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR  173 (581)
Q Consensus        94 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  173 (581)
                      .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            34667777777777765555666777777777777777755555566777777777777777655555566677777777


Q ss_pred             CCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcc
Q 035922          174 SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG  253 (581)
Q Consensus       174 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  253 (581)
                      +++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.       +++++.++++.|.+.|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCc
Confidence            777777655555566667777777777766655555566666666666666655432       2334444444444444


Q ss_pred             cCCh
Q 035922          254 NIPL  257 (581)
Q Consensus       254 ~~~~  257 (581)
                      .+|.
T Consensus       180 ~ip~  183 (208)
T 2o6s_A          180 VVRN  183 (208)
T ss_dssp             TBBC
T ss_pred             eeec
Confidence            4443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=2.4e-20  Score=174.30  Aligned_cols=180  Identities=19%  Similarity=0.154  Sum_probs=86.3

Q ss_pred             cEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922          303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN  382 (581)
Q Consensus       303 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  382 (581)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34455555444 223222  235555555555555444444455555555555555555433333445555555555555


Q ss_pred             ccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccC
Q 035922          383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIP  462 (581)
Q Consensus       383 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  462 (581)
                      .+++..+..+..+++|++|++++|++.                         +..+..+..+++|++|++++|++++..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQ-------------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCc-------------------------ccCHhHhccCCcCCEEECCCCccceeCH
Confidence            555433333444444444444444444                         3333334444455555555555543333


Q ss_pred             ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922          463 ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK  517 (581)
Q Consensus       463 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~  517 (581)
                      ..+..+++|+.|++++|++.+       .++.|+.|+++.|.++|.+|.+++.++
T Consensus       142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            334455555555555554432       233455555555555555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=5.2e-20  Score=196.39  Aligned_cols=183  Identities=23%  Similarity=0.317  Sum_probs=157.7

Q ss_pred             CCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEEC
Q 035922          324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF  403 (581)
Q Consensus       324 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  403 (581)
                      .+|+.|++++|++++ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            389999999999996 77655  389999999999998 677   457999999999999997 776 655  9999999


Q ss_pred             CCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc
Q 035922          404 SKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG  483 (581)
Q Consensus       404 s~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  483 (581)
                      ++|++++ +|.   .+++| +.|++++|.+++ +|.   .+++|++|++++|++++ +|. +.  ++|+.|+|++|+++ 
T Consensus       128 s~N~l~~-lp~---~l~~L-~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALL-EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCcCCC-CCC---cCccc-cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            9999995 777   57788 899999999995 665   57899999999999996 777 65  99999999999998 


Q ss_pred             cCcccccCCCCC-------CEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922          484 PIPSSLRSLRGL-------SVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT  536 (581)
Q Consensus       484 ~~p~~l~~l~~L-------~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~  536 (581)
                      .+|. +..  +|       +.|++++|.++ .+|..+..+++|++|++++|++++. +|.
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~-~p~  248 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR-IRE  248 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH-HHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc-CHH
Confidence            6776 654  77       99999999998 5788888899999999999999987 663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.4e-19  Score=171.73  Aligned_cols=163  Identities=23%  Similarity=0.262  Sum_probs=119.2

Q ss_pred             CCCCCCCCCccccCC---CCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCC
Q 035922           66 GSWNESSHFCKWHES---LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRC  142 (581)
Q Consensus        66 ~~w~~~~~~c~w~~~---~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  142 (581)
                      ..|..+...|.|.+.   ..-.+.+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l   87 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL   87 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hccCCCCCEEeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence            355567789999761   112234555443  677888888888887777778888888888888888875555667788


Q ss_pred             CCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccccccc
Q 035922          143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL  222 (581)
Q Consensus       143 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l  222 (581)
                      ++|++|+|++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            88888888888887666666777888888888888877 67777777888888888888877666666777777777777


Q ss_pred             CCccCCCCC
Q 035922          223 GGNMLSGTI  231 (581)
Q Consensus       223 ~~n~l~~~~  231 (581)
                      ++|.+.+..
T Consensus       167 ~~N~~~c~c  175 (229)
T 3e6j_A          167 FGNPWDCEC  175 (229)
T ss_dssp             TTSCBCTTB
T ss_pred             eCCCccCCc
Confidence            777776443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=6.2e-20  Score=172.89  Aligned_cols=179  Identities=16%  Similarity=0.158  Sum_probs=128.6

Q ss_pred             cEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeecc
Q 035922          375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDIS  453 (581)
Q Consensus       375 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  453 (581)
                      +.+++++|.++ .+|..+  ...+++|++++|++++..+ ..+..++.+ +.|++++|++++..+..|..+++|++|+|+
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            35666666665 345433  2345677777777775544 345677777 788888888886666678888888888888


Q ss_pred             CCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCC
Q 035922          454 GNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARY  533 (581)
Q Consensus       454 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  533 (581)
                      +|++++..+..|..+++|++|+|++|++.+..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|++.+. 
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~-  168 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN-  168 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS-
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC-
Confidence            8888877777788888888888888888888788888888888888888888888788888888899999999888876 


Q ss_pred             CCCccccCCcCcc-cccCCCCCccCCC
Q 035922          534 VPTEGVIKNSSAT-SVMGNSKLCGGIP  559 (581)
Q Consensus       534 ip~~~~~~~l~~l-~~~gN~~lcg~~~  559 (581)
                      .+......-+... ...+|+ .|+.++
T Consensus       169 c~l~~l~~~~~~~~~~~~~~-~C~~P~  194 (220)
T 2v70_A          169 CYLAWLGEWLRKKRIVTGNP-RCQKPY  194 (220)
T ss_dssp             GGGHHHHHHHHHSCCBCCCC-EEEESG
T ss_pred             CchHHHHHHHHhcCccccCC-ccCCCh
Confidence            5532211111111 234555 786554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=4.5e-19  Score=167.00  Aligned_cols=154  Identities=19%  Similarity=0.252  Sum_probs=124.1

Q ss_pred             cEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccC
Q 035922          375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISG  454 (581)
Q Consensus       375 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  454 (581)
                      +.++++++.++ .+|..+.  +++++|++++|++.+..+..+..++.+ +.|++++|++++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            57788888877 4565443  678888888888886666677788888 7888888888877788888888888888888


Q ss_pred             CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922          455 NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       455 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      |+++...+..|..+++|+.|+|++|++.+..|..|..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            888855555677888888888888888887788888888888888888888877777788888888888888888654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=4.1e-19  Score=174.87  Aligned_cols=189  Identities=25%  Similarity=0.341  Sum_probs=113.5

Q ss_pred             CcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecC
Q 035922          302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE  381 (581)
Q Consensus       302 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  381 (581)
                      +..+.+..+.+.+..+  +..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            3344455555554322  34567788888888877643 3 36677778888888877775433  67777777777777


Q ss_pred             cccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcccc
Q 035922          382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI  461 (581)
Q Consensus       382 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  461 (581)
                      |.+++ ++ .+..+++|++|++++|++.+ + ..+..++.| +.|++++|++++.  ..+..+++|++|++++|++++..
T Consensus       100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~  172 (291)
T 1h6t_A          100 NKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  172 (291)
T ss_dssp             SCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence            77764 22 36667777777777777663 2 345555566 5666666666532  34555566666666666655333


Q ss_pred             CccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922          462 PISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG  507 (581)
Q Consensus       462 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  507 (581)
                      +  +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+..
T Consensus       173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            2  5555566666666665553 23 25555555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=2.7e-19  Score=168.45  Aligned_cols=153  Identities=22%  Similarity=0.279  Sum_probs=120.7

Q ss_pred             CeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCC
Q 035922          351 RMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSR  430 (581)
Q Consensus       351 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~  430 (581)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..+..+++|++|++++|++.+..|..+..+++| ++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-NSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-CEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-CEEECCC
Confidence            56788888777 5565443  678888888888887666678888888888888888887777888888888 7888888


Q ss_pred             CcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922          431 NHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG  507 (581)
Q Consensus       431 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  507 (581)
                      |+++...+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++.+..+..|..+++|+.|++++|.+..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            88885555556778888888888888887777788888888888888888887777778888888888888888754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3.5e-19  Score=181.14  Aligned_cols=178  Identities=21%  Similarity=0.187  Sum_probs=145.0

Q ss_pred             CeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccccc-CCCCCcEEECCCCcccccCCcchhcccCCcceeEcC
Q 035922          351 RMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC-QCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLS  429 (581)
Q Consensus       351 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls  429 (581)
                      +.++++++.++ .+|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|++.+..+..+..+++| ++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEECC
Confidence            57899999887 5666543  4688999999999877777777 88999999999999986666778888888 889999


Q ss_pred             CCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccc---cCCCCCCEEECCCCccc
Q 035922          430 RNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSL---RSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       430 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~ls~n~l~  506 (581)
                      +|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++.+..+..|   ..+++|+.|||++|++.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999987667778888999999999999987778888889999999999999986544445   56888999999999998


Q ss_pred             cccchhhhcCCC--CCEEECcCCCCCCC
Q 035922          507 GEIPKFLAGFKL--LENVNLSYNDLGAR  532 (581)
Q Consensus       507 ~~~p~~l~~l~~--L~~L~ls~N~l~~~  532 (581)
                      +..+..+..++.  ++.|++++|++...
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCC
Confidence            766677888877  48889999888753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=4.5e-19  Score=174.55  Aligned_cols=167  Identities=25%  Similarity=0.382  Sum_probs=75.4

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      .|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence            444555555444422 2 24444455555555554443222  4444455555555554442 11 24444455555555


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|++++.  ..+..+++|++|++++|++.+.  ..+..+++| +.|++++|++++..+  +..+++|++|++++|++++ 
T Consensus       121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-  192 (291)
T 1h6t_A          121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-  192 (291)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred             CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-CEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence            5544432  2344444455555555544422  334444444 445555554443222  4444455555555554442 


Q ss_pred             cCccccCCCCCcEEECCCCcCc
Q 035922          461 IPISLGSCTSLEKLLMQGNKFY  482 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~  482 (581)
                      ++ .+..+++|+.|++++|++.
T Consensus       193 l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          193 LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             Ch-hhccCCCCCEEECcCCccc
Confidence            22 2444445555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.8e-18  Score=162.92  Aligned_cols=157  Identities=21%  Similarity=0.228  Sum_probs=114.1

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCc-ccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIP-ATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM  176 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  176 (581)
                      +++++++|.++ .+|..+.  +.+++|+|++|.+++..| ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46777777776 3555443  345777777777775544 3467777777788777777776666777777788888887


Q ss_pred             CcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCC
Q 035922          177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP  256 (581)
Q Consensus       177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~  256 (581)
                      |++++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            77776666667777778888888887777777777777778888888887776667777777777777777777776554


Q ss_pred             h
Q 035922          257 L  257 (581)
Q Consensus       257 ~  257 (581)
                      .
T Consensus       171 l  171 (220)
T 2v70_A          171 L  171 (220)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=9.4e-19  Score=177.95  Aligned_cols=178  Identities=20%  Similarity=0.114  Sum_probs=154.0

Q ss_pred             CCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCC-CCCCCcEEeecCcccCCCCcccccCCCCCcEEECC
Q 035922          326 LRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVG-NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFS  404 (581)
Q Consensus       326 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  404 (581)
                      -+.+++++++++ .+|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            368999999998 5676553  5689999999999988777787 89999999999999998888889999999999999


Q ss_pred             CCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccc---cCCCCCcEEECCCCcC
Q 035922          405 KNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL---GSCTSLEKLLMQGNKF  481 (581)
Q Consensus       405 ~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l  481 (581)
                      +|++.+..+..+..+++| +.|++++|++++..|..|..+++|+.|+|++|++++..+..+   ..+++|+.|+|++|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            999996666778899999 899999999998888899999999999999999995444444   5799999999999999


Q ss_pred             cccCcccccCCCC--CCEEECCCCcccc
Q 035922          482 YGPIPSSLRSLRG--LSVWDFAQNNLSG  507 (581)
Q Consensus       482 ~~~~p~~l~~l~~--L~~L~ls~n~l~~  507 (581)
                      .+..+..+..++.  ++.|++++|.+..
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccC
Confidence            9776678888887  4899999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=1.1e-18  Score=188.28  Aligned_cols=191  Identities=25%  Similarity=0.334  Sum_probs=135.9

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      .+..+.+..+.+....+  +..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            34555666666664433  4667888888888888874 33 47788888888888888875443  7778888888888


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|.+.+ +| .+..+++|++|++++|++.+ + +.+..++.| +.|+|++|++++.  ..+..+++|+.|+|++|++++.
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            888875 33 57778888888888888773 3 346677777 7777777777743  4567777777777777777755


Q ss_pred             cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccc
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGE  508 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~  508 (581)
                      .|  +..+++|+.|+|++|++.+. | .+..+++|+.|+|++|.+.+.
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             hh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            44  67777777777777777653 3 467777777777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.9e-18  Score=186.35  Aligned_cols=169  Identities=24%  Similarity=0.384  Sum_probs=138.4

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      .|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..+  +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+++
T Consensus        44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            88889999988874 34 47888999999999998886544  7888999999999998874 33 67888999999999


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..++.| +.|+|++|++++..|  +..+++|+.|+|++|++++ 
T Consensus       118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-  189 (605)
T 1m9s_A          118 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-  189 (605)
T ss_dssp             TSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred             CCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC-CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence            9988853  3578888999999999988843  577788888 889999999886555  8888999999999999885 


Q ss_pred             cCccccCCCCCcEEECCCCcCccc
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGP  484 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~  484 (581)
                      ++ .+..+++|+.|+|++|++.+.
T Consensus       190 l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          190 LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             Ch-HHccCCCCCEEEccCCcCcCC
Confidence            33 588889999999999988754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=1.2e-18  Score=160.32  Aligned_cols=156  Identities=19%  Similarity=0.238  Sum_probs=91.3

Q ss_pred             cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCc-cccCCCCCCeeeccCCcCccccCccccCCCCCcEEECC
Q 035922          399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI-EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ  477 (581)
Q Consensus       399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  477 (581)
                      +++++++|++. .+|..+..  .+ +.|++++|++++..+. .+..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            45555555554 45544332  34 5666666666544332 25666666666666666666656666666666666666


Q ss_pred             CCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922          478 GNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       478 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      +|++.+..+..|..+++|+.|++++|++++.+|..+..+++|++|++++|++.+. .+.......++...+.++...|+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~-c~l~~~~~~l~~~~~~~~~~~C~~  165 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN-CHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS-GGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc-CcchHHHHHHHHcCCCCCCCCCCC
Confidence            6666666666666666666666666666666666666666666666666666655 443222222333344455555654


Q ss_pred             CC
Q 035922          558 IP  559 (581)
Q Consensus       558 ~~  559 (581)
                      ++
T Consensus       166 P~  167 (192)
T 1w8a_A          166 PS  167 (192)
T ss_dssp             ST
T ss_pred             Ch
Confidence            43

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=1e-17  Score=158.81  Aligned_cols=156  Identities=21%  Similarity=0.189  Sum_probs=137.8

Q ss_pred             CcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922           97 LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM  176 (581)
Q Consensus        97 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  176 (581)
                      -+.++.+++.++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            367999999887 5666554  8999999999999988899999999999999999999877667789999999999999


Q ss_pred             CcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCC
Q 035922          177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP  256 (581)
Q Consensus       177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~  256 (581)
                      |++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9999777777899999999999999997 678889999999999999999996656678888999999999998886654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.4e-18  Score=159.19  Aligned_cols=134  Identities=16%  Similarity=0.186  Sum_probs=77.4

Q ss_pred             ccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCC
Q 035922          392 LCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSL  471 (581)
Q Consensus       392 l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  471 (581)
                      +..+++|++|++++|.+.  .+..+..++.+ ++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|
T Consensus        62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT--NYNPISGLSNL-ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS--CCGGGTTCTTC-CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             HhcCCCCCEEEccCCCCC--cchhhhcCCCC-CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            333444444444444332  11234444555 555555555555455556666666666666666666566666677777


Q ss_pred             cEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922          472 EKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       472 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      ++|++++|++.+.+| .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++.+
T Consensus       139 ~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          139 NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            777777776223444 46677777777777777764 33 56777777777777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.5e-18  Score=159.03  Aligned_cols=154  Identities=18%  Similarity=0.211  Sum_probs=130.5

Q ss_pred             cCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922           92 GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD  171 (581)
Q Consensus        92 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (581)
                      +++++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            56788999999999998 556 6899999999999999775  3347899999999999999999888889999999999


Q ss_pred             EECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccC
Q 035922          172 LRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRM  251 (581)
Q Consensus       172 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  251 (581)
                      |++++|++++..|..++.+++|++|++++|...+.+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            9999999998888889999999999999998334455 68899999999999999984 44 667778888888887776


Q ss_pred             c
Q 035922          252 Q  252 (581)
Q Consensus       252 ~  252 (581)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            5

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=7.1e-21  Score=204.11  Aligned_cols=187  Identities=19%  Similarity=0.153  Sum_probs=89.0

Q ss_pred             CCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCc-------------ccccCCccCCCCCCCcEEe-ecCcccCCC
Q 035922          322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR-------------FSGNIPLSVGNLKMLIQLE-VSENFLQGT  387 (581)
Q Consensus       322 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~  387 (581)
                      .++.|+.|+|++|+++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+.  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence            3455555555555554 455555555555555554443             2233344444444555444 3333221  


Q ss_pred             CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccC
Q 035922          388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGS  467 (581)
Q Consensus       388 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  467 (581)
                               .|..+.+++|.+.. ++.     ..+ +.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.
T Consensus       424 ---------~L~~l~l~~n~i~~-l~~-----~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLK-MEY-----ADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHH-HHH-----TTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ---------hhhhhhhhcccccc-cCc-----cCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                     11222222222221 110     112 445555555553 343 555555555555555555 44555555


Q ss_pred             CCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccccc-chhhhcCCCCCEEECcCCCCCCC
Q 035922          468 CTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEI-PKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       468 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      +++|+.|+|++|++++ +| .++.+++|+.|++++|.+++.+ |..+..+++|++|++++|++++.
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            5555555555555553 34 4555555555555555555444 55555555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=5.6e-21  Score=204.90  Aligned_cols=201  Identities=19%  Similarity=0.163  Sum_probs=170.3

Q ss_pred             cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCc-------------CcccccccccCCCCCCeEe-ccCCcccccCC
Q 035922          300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK-------------LSGTIPSAIGDLQNLRMLG-MSGNRFSGNIP  365 (581)
Q Consensus       300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~~~~  365 (581)
                      +.|+.|++++|.++ .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+     
T Consensus       349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-----  422 (567)
T 1dce_A          349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-----  422 (567)
T ss_dssp             TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-----
T ss_pred             ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-----
Confidence            48999999999997 789999999999999997764             5567788888899999998 677654     


Q ss_pred             ccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCC
Q 035922          366 LSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLK  445 (581)
Q Consensus       366 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~  445 (581)
                            ..|+.+.+++|.++...+      ..|++|++++|.++ .+|. +..++.| +.|++++|+++ .+|..++.++
T Consensus       423 ------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          423 ------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH-LEQLLLV-THLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             ------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCT
T ss_pred             ------chhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC-ccccccC-cEeecCccccc-ccchhhhcCC
Confidence                  356667778887774322      24899999999998 4776 8999999 89999999999 8899999999


Q ss_pred             CCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccC-cccccCCCCCCEEECCCCccccccch---hhhcCCCCCE
Q 035922          446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPI-PSSLRSLRGLSVWDFAQNNLSGEIPK---FLAGFKLLEN  521 (581)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p~---~l~~l~~L~~  521 (581)
                      +|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|++++|.+++.+|.   .+..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            99999999999995 67 8999999999999999999877 99999999999999999999977653   3455899999


Q ss_pred             EEC
Q 035922          522 VNL  524 (581)
Q Consensus       522 L~l  524 (581)
                      ||+
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=4.5e-19  Score=196.03  Aligned_cols=262  Identities=18%  Similarity=0.113  Sum_probs=125.2

Q ss_pred             CCHhHHHHHHHHHhcCCCCCCCCCCCCCCC-CCCccccCCCCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCC
Q 035922           42 GNETDREALLEFKSKITVDPFGVLGSWNES-SHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRR  120 (581)
Q Consensus        42 ~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~-~~~c~w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  120 (581)
                      ..+.++++++++..+.....+..-..|... ...+.|.+..          ..-++++.|+|.++.+.. .+..+.....
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~s~~~~~~l~L~~n~~~~-~~~~~l~~l~  197 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSA----------VSTPLTPKIELFANGKDE-ANQALLQHKK  197 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCce----------ecCCccceEEeeCCCCCc-chhhHhhcCc
Confidence            345678899999877654444444556433 3445665421          112456788888888774 3433322222


Q ss_pred             CCE-----EEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcE
Q 035922          121 LRG-----LTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR  195 (581)
Q Consensus       121 L~~-----L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  195 (581)
                      |+.     ++++.|.+. ..|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++
T Consensus       198 Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  274 (727)
T 4b8c_D          198 LSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV  274 (727)
T ss_dssp             -------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE
T ss_pred             cCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE
Confidence            222     223334444 55778888899999999999887 67777778899999999999988 88888889999999


Q ss_pred             EEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccC
Q 035922          196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN  275 (581)
Q Consensus       196 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  275 (581)
                      |+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+..+++|+.|++++|.+.+.+|..+...-...         
T Consensus       275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~---------  343 (727)
T 4b8c_D          275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG---------  343 (727)
T ss_dssp             EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH---------
T ss_pred             EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh---------
Confidence            999999987 67888888999999999999887 7888888888999999998888887776654310000         


Q ss_pred             cceeEeccCCcCcccCchhhhhcccCCcEEEccCC--------cccccCchhhcCCCCCCEEEeecCcCc
Q 035922          276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNN--------KIFGSIPPGIGKLVNLRRLYVWNNKLS  337 (581)
Q Consensus       276 ~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~L~~n~l~  337 (581)
                        ..+++.+|.+++.+|.       .|+.|+++.|        .+.+..+..+..+..++...+++|.+.
T Consensus       344 --~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          344 --LIFYLRDNRPEIPLPH-------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --HHHHHHHCCCCCCCCC-------C-----------------------------------------CCC
T ss_pred             --hHHhhccCcccCcCcc-------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence              1134555666666664       4555666655        222222223334444455555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=5.9e-18  Score=163.88  Aligned_cols=170  Identities=21%  Similarity=0.256  Sum_probs=109.5

Q ss_pred             CCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEE
Q 035922          323 LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGIN  402 (581)
Q Consensus       323 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  402 (581)
                      +.+++.++++++.+++. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            44566677777777743 3 4667778888888888776 344 56677777777877777775433  67777777777


Q ss_pred             CCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCc
Q 035922          403 FSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY  482 (581)
Q Consensus       403 ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  482 (581)
                      +++|++.+ +|....  +++ +.|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|+.|++++|++.
T Consensus        92 L~~N~l~~-l~~~~~--~~L-~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           92 VNRNRLKN-LNGIPS--ACL-SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CCSSCCSC-CTTCCC--SSC-CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             CCCCccCC-cCcccc--Ccc-cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            77777763 443222  555 667777776664 22 466666666666666666632 3 4566666666666666666


Q ss_pred             ccCcccccCCCCCCEEECCCCccccc
Q 035922          483 GPIPSSLRSLRGLSVWDFAQNNLSGE  508 (581)
Q Consensus       483 ~~~p~~l~~l~~L~~L~ls~n~l~~~  508 (581)
                      +.  ..+..+++|+.|++++|.+.+.
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccCC
Confidence            44  4456666666666666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=1.4e-18  Score=192.01  Aligned_cols=218  Identities=21%  Similarity=0.201  Sum_probs=105.8

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCC-----EEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCc
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLR-----RLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLI  375 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~-----~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  375 (581)
                      .++.|++.+|.+... +..+.....|.     .+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|+
T Consensus       174 ~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~  250 (727)
T 4b8c_D          174 LTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred             ccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence            466666666666542 22221111121     2222333333 44666777778888888888777 5666666778888


Q ss_pred             EEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCC
Q 035922          376 QLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGN  455 (581)
Q Consensus       376 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  455 (581)
                      +|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++| ++|+|++|.++ .+|..|+.+++|++|+|++|
T Consensus       251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            8888888877 67777777888888888888877 777777777777 77888888776 67777788888888888888


Q ss_pred             cCccccCccccCCCC-CcEEECCCCcCcccCcccccCCCCCCEEECCCC--------ccccccchhhhcCCCCCEEECcC
Q 035922          456 LLSGEIPISLGSCTS-LEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN--------NLSGEIPKFLAGFKLLENVNLSY  526 (581)
Q Consensus       456 ~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n--------~l~~~~p~~l~~l~~L~~L~ls~  526 (581)
                      .+++.+|..+..+.. +..+++++|.+.+.+|..      |+.|++++|        .+.+..+..+..+..++...+++
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~  400 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY  400 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence            888777776654422 223677788887776653      445556666        34444444455666667777777


Q ss_pred             CCCCC
Q 035922          527 NDLGA  531 (581)
Q Consensus       527 N~l~~  531 (581)
                      |-+.+
T Consensus       401 Nil~~  405 (727)
T 4b8c_D          401 NTLCQ  405 (727)
T ss_dssp             -CCCG
T ss_pred             ccccc
Confidence            77753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=8.1e-18  Score=162.93  Aligned_cols=168  Identities=21%  Similarity=0.281  Sum_probs=129.1

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      .++.++++++.+++..  .+..+++|++|++++|+++ .++ .+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            5677778888877443  4677888888888888887 344 57788888888888888875443  7888888888888


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|++++. |. +.. ++|++|++++|++++ ++ .+..+++| +.|++++|++++ ++ .+..+++|++|++++|++++.
T Consensus        94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L-~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNL-EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTC-CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccc-cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence            8888853 33 233 788888888888874 33 57778888 788888888885 34 677888888888888888855


Q ss_pred             cCccccCCCCCcEEECCCCcCccc
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGP  484 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~  484 (581)
                        ..+..+++|+.|++++|++.+.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              5678888888888888888754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.1e-16  Score=147.26  Aligned_cols=132  Identities=23%  Similarity=0.320  Sum_probs=98.7

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcc-cCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPA-TMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM  176 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  176 (581)
                      +++++++++++ .+|..+..  +|++|++++|.+++..+. .++.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56778888775 56655543  788888888888755553 377788888888888888877777788888888888888


Q ss_pred             CcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCC
Q 035922          177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIP  232 (581)
Q Consensus       177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  232 (581)
                      |++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88887777777777888888888888877777777777777777777777765443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=2.3e-17  Score=165.51  Aligned_cols=293  Identities=10%  Similarity=0.041  Sum_probs=152.1

Q ss_pred             cccCcccc--CCCCCcEEECCCCCCCCCCchhccC-CCCCCEEEccCCCCC--CCCcccCcCCCCCCEEEccCCcCcccC
Q 035922           85 GSISPYIG--NLSFLRRLHLDNNNFTHAIPPEIGR-LRRLRGLTLNNNSIG--GEIPATMSRCSNIILMDLSVNQLLGNI  159 (581)
Q Consensus        85 g~i~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~  159 (581)
                      |.++..+.  .+.+++.|.++++ +.......+.. +++|++|||++|++.  ...+.   .++.++.+.+..|.+   .
T Consensus        13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~   85 (329)
T 3sb4_A           13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---P   85 (329)
T ss_dssp             TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---C
T ss_pred             CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---C
Confidence            44444443  3667888888764 22111123333 788999999999887  22222   222345555555532   2


Q ss_pred             CcccCC--------CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccC----
Q 035922          160 PPEFGS--------LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNML----  227 (581)
Q Consensus       160 p~~l~~--------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l----  227 (581)
                      +..|.+        +++|+.|++.+ .++..-+..|.++++|+.+++.+|.+....+..|..+.++..+....+..    
T Consensus        86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~  164 (329)
T 3sb4_A           86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK  164 (329)
T ss_dssp             TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred             HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence            345566        88888888888 77755566788888888888888888777777787777777776655321    


Q ss_pred             CCCCCccccCCCCcc-EEEcccccCcccCChhhhcC---CCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCc
Q 035922          228 SGTIPSSIFNRSSIT-TFSVVLNRMQGNIPLDFGFT---LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLA  303 (581)
Q Consensus       228 ~~~~p~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~---l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~  303 (581)
                      ...-...+.++..|+ .+.+...   +.++..+...   ..+++.+.+.++            +.......+....++|+
T Consensus       165 ~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~------------l~~~~~~~l~~~~~~L~  229 (329)
T 3sb4_A          165 NRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK------------LDNADFKLIRDYMPNLV  229 (329)
T ss_dssp             TTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC------------CCHHHHHHHHHHCTTCC
T ss_pred             ccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeee------------ecHHHHHHHHHhcCCCe
Confidence            111223344444554 3333221   1112211110   122222222111            00000011111123555


Q ss_pred             EEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCC-eEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922          304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLR-MLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN  382 (581)
Q Consensus       304 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  382 (581)
                      .+++++|.++...+..|.++++|+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+..|.+|++|+.+++++|
T Consensus       230 ~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          230 SLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             EEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             EEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence            5555555555444444555555555555554 4434444555555555 555555 444344455555555555555555


Q ss_pred             ccCCCCcccccCCCCCcEEE
Q 035922          383 FLQGTIPSSLCQCKSLIGIN  402 (581)
Q Consensus       383 ~l~~~~p~~l~~l~~L~~L~  402 (581)
                      .++...+..|.++++|+.++
T Consensus       308 ~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          308 KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCCEECTTTTCTTCCCCEEE
T ss_pred             ccCccchhhhcCCcchhhhc
Confidence            55544444555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=5.4e-17  Score=145.88  Aligned_cols=138  Identities=19%  Similarity=0.188  Sum_probs=114.8

Q ss_pred             CCCCCcEEECCCCCCC-CCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922           93 NLSFLRRLHLDNNNFT-HAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD  171 (581)
Q Consensus        93 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (581)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3467899999999997 67888888999999999999999865  78889999999999999998778877888999999


Q ss_pred             EECCCCcccccC-CccCcCCCCCcEEEccCCCCCCcCC---CccCCCCcccccccCCccCCCCCCc
Q 035922          172 LRSFMNNLTGSI-PSSLGNLSSIIRLSLTYNNIARSIP---DTLGYLENLSFLSLGGNMLSGTIPS  233 (581)
Q Consensus       172 L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~~~~p~  233 (581)
                      |++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            999999988532 2678889999999999998876544   47788889999999888876 4444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=2e-16  Score=142.19  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=111.0

Q ss_pred             CCCCcEEECCCCccc-ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcE
Q 035922          395 CKSLIGINFSKNNLS-GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEK  473 (581)
Q Consensus       395 l~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  473 (581)
                      .++|++|++++|.+. +.+|..+..++.+ +.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            467888888888876 6777777788888 7888888888854  67888899999999999998778887878999999


Q ss_pred             EECCCCcCcccC-cccccCCCCCCEEECCCCccccccc---hhhhcCCCCCEEECcCCCCCC
Q 035922          474 LLMQGNKFYGPI-PSSLRSLRGLSVWDFAQNNLSGEIP---KFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       474 L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      |++++|++.+.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            999999998642 2678899999999999999986655   478899999999999998865

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=1.4e-16  Score=146.40  Aligned_cols=129  Identities=23%  Similarity=0.315  Sum_probs=95.8

Q ss_pred             cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCC
Q 035922          399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG  478 (581)
Q Consensus       399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  478 (581)
                      +++++++|++. .+|..+.  +.+ +.|++++|+++ .+|..+.++++|++|++++|++++..+..|..+++|++|+|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45666666666 5565443  345 67777777777 6667777778888888888888766667777888888888888


Q ss_pred             CcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922          479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       479 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      |++.+..|..|..+++|+.|++++|.++...+..|..+++|++|++++|++...
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            888877777788888888888888888766666677888888888888887654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=5.4e-16  Score=142.57  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=116.4

Q ss_pred             ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922          424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN  503 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n  503 (581)
                      +.+++++|.++ .+|..+.  ++|++|++++|+++ .+|..|..+++|+.|++++|++++..+..|..+++|+.|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57999999999 6776654  68999999999998 78899999999999999999999888889999999999999999


Q ss_pred             ccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922          504 NLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       504 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      .+++..|..|..+++|++|++++|++++. .+. ...+++|+.+++.+||+.|..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCCCeecCC
Confidence            99998888999999999999999999974 332 567889999999999998854

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=8.6e-17  Score=141.46  Aligned_cols=128  Identities=17%  Similarity=0.171  Sum_probs=103.9

Q ss_pred             CCCCcEEECCCCCCC-CCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEE
Q 035922           94 LSFLRRLHLDNNNFT-HAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDL  172 (581)
Q Consensus        94 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  172 (581)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467889999999888 67888888899999999999988865  678888899999999998887777777778888888


Q ss_pred             ECCCCccccc-CCccCcCCCCCcEEEccCCCCCCcCC---CccCCCCcccccccC
Q 035922          173 RSFMNNLTGS-IPSSLGNLSSIIRLSLTYNNIARSIP---DTLGYLENLSFLSLG  223 (581)
Q Consensus       173 ~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~  223 (581)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            8888888853 34678888888888888888876554   467778888888775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=2.5e-16  Score=138.50  Aligned_cols=128  Identities=17%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             CCCcEEECCCCccc-ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEE
Q 035922          396 KSLIGINFSKNNLS-GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKL  474 (581)
Q Consensus       396 ~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  474 (581)
                      ++|++|++++|.+. +.+|..+..++.+ +.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEEL-EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTC-CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCC-cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34555555555554 4455545555555 5555555555533  455666667777777777765566666667777777


Q ss_pred             ECCCCcCccc-CcccccCCCCCCEEECCCCccccccc---hhhhcCCCCCEEECcC
Q 035922          475 LMQGNKFYGP-IPSSLRSLRGLSVWDFAQNNLSGEIP---KFLAGFKLLENVNLSY  526 (581)
Q Consensus       475 ~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~  526 (581)
                      ++++|++.+. .+..+..+++|+.|++++|.+++..+   ..+..+++|++||+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7777776653 23566777777777777777765544   4567777777777653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=2.3e-16  Score=158.20  Aligned_cols=202  Identities=11%  Similarity=0.078  Sum_probs=96.9

Q ss_pred             CCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCccc----CCCCcccccCCCCC
Q 035922          323 LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL----QGTIPSSLCQCKSL  398 (581)
Q Consensus       323 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L  398 (581)
                      +++|+.|++.+ .++.....+|.+|++|+.+++++|.+....+..|.++.++..+....+..    .......+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            77777777777 66655566677777777777777777656666677666666665554221    11222334455555


Q ss_pred             c-EEECCCCcccccCCcchh----cccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcE
Q 035922          399 I-GINFSKNNLSGTIPPQLF----GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEK  473 (581)
Q Consensus       399 ~-~L~ls~n~l~~~~p~~~~----~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  473 (581)
                      + .+.+....   .++..+.    ....+ ..+.+.++-...........+++|+.|+|++|+++...+..|.+|++|+.
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGC-SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ceeEEecCCC---cHHHHHhhcccCcccc-ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            5 34433221   1111111    11122 22333322111000000112445555555555555333344555555555


Q ss_pred             EECCCCcCcccCcccccCCCCCC-EEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922          474 LLMQGNKFYGPIPSSLRSLRGLS-VWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       474 L~Ls~n~l~~~~p~~l~~l~~L~-~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      |++.+| +....+.+|.++++|+ .+++.+ .+....+..|.++++|+.+++++|+++.
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            555554 4333334455555555 555554 4443334455555555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=3e-15  Score=135.63  Aligned_cols=131  Identities=18%  Similarity=0.215  Sum_probs=87.2

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN  177 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  177 (581)
                      +.+++++++++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            45666666666 344333  257777777777777655556677777777777777777555555677777777777777


Q ss_pred             cccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCC
Q 035922          178 NLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTI  231 (581)
Q Consensus       178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  231 (581)
                      ++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            777555555667777777777777776555555566777777777777666443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=1.8e-15  Score=137.08  Aligned_cols=133  Identities=20%  Similarity=0.195  Sum_probs=104.0

Q ss_pred             CcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECC
Q 035922          398 LIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ  477 (581)
Q Consensus       398 L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  477 (581)
                      .+.++++++++. .+|..+.  +.+ +.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            456677777766 5554432  455 778888888886556667788888888888888886666667888899999999


Q ss_pred             CCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCC
Q 035922          478 GNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVP  535 (581)
Q Consensus       478 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip  535 (581)
                      +|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+. .|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-HH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc-Cc
Confidence            9988877777788888999999999998876666678888999999999998876 65

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=1.3e-14  Score=131.39  Aligned_cols=133  Identities=14%  Similarity=0.126  Sum_probs=96.5

Q ss_pred             ccCCCCCcEEECCCCcccccCCcchhccc-CCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCC
Q 035922          392 LCQCKSLIGINFSKNNLSGTIPPQLFGLS-SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTS  470 (581)
Q Consensus       392 l~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  470 (581)
                      +..+.+|++|++++|++. .+|. +..+. ++ +.|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L-~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCC-CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            455667777777777776 4443 34444 66 7778888877753  46777888888888888888544444578888


Q ss_pred             CcEEECCCCcCcccCcc--cccCCCCCCEEECCCCccccccchh----hhcCCCCCEEECcCCCCCC
Q 035922          471 LEKLLMQGNKFYGPIPS--SLRSLRGLSVWDFAQNNLSGEIPKF----LAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       471 L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~L~ls~N~l~~  531 (581)
                      |+.|++++|++. .+|.  .+..+++|+.|++++|.+. .+|..    +..+++|++||+++|....
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            888888888885 4555  6788888888888888887 44553    7888888888888887654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=7e-17  Score=149.36  Aligned_cols=133  Identities=23%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             cccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCC
Q 035922          391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTS  470 (581)
Q Consensus       391 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  470 (581)
                      .+..+++|++|++++|++.+ +| .+..++.+ +.|++++|+++ .+|..+..+++|++|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            55566666666666666663 55 66666666 66777777666 556556666777777777777764 44 4667777


Q ss_pred             CcEEECCCCcCcccCc-ccccCCCCCCEEECCCCccccccch----------hhhcCCCCCEEECcCCCCCC
Q 035922          471 LEKLLMQGNKFYGPIP-SSLRSLRGLSVWDFAQNNLSGEIPK----------FLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       471 L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~----------~l~~l~~L~~L~ls~N~l~~  531 (581)
                      |+.|++++|++.+..+ ..+..+++|+.|++++|.+.+.+|.          .+..+++|++||  +|.++.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            7777777777764322 3567777778888888777766554          267788888876  565543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=6.7e-15  Score=133.19  Aligned_cols=134  Identities=15%  Similarity=0.107  Sum_probs=90.3

Q ss_pred             cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922           90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI  169 (581)
Q Consensus        90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (581)
                      .+.++++|++|++++|.++. +|......++|++|++++|.+++.  ..++.+++|++|++++|.+++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            34566778888888888774 444333334788888888887754  567777788888888887775544445777777


Q ss_pred             CEEECCCCcccccCCc--cCcCCCCCcEEEccCCCCCCcCCCc----cCCCCcccccccCCccCC
Q 035922          170 KDLRSFMNNLTGSIPS--SLGNLSSIIRLSLTYNNIARSIPDT----LGYLENLSFLSLGGNMLS  228 (581)
Q Consensus       170 ~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~  228 (581)
                      ++|++++|++. .+|.  .+..+++|++|++++|.++. +|..    +..+++|++|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777775 4554  56677777777777777753 3442    566666666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=1.6e-16  Score=146.97  Aligned_cols=132  Identities=26%  Similarity=0.292  Sum_probs=81.8

Q ss_pred             cCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCC
Q 035922          367 SVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKN  446 (581)
Q Consensus       367 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~  446 (581)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..++++ +.|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L-~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-EELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC-SEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC-CEEECcCCcCCc-CC-ccccCCC
Confidence            44455555555555555553 34 4555556666666666655 555555555666 667777776664 34 4666677


Q ss_pred             CCeeeccCCcCccccC-ccccCCCCCcEEECCCCcCcccCcc----------cccCCCCCCEEECCCCccc
Q 035922          447 LGVLDISGNLLSGEIP-ISLGSCTSLEKLLMQGNKFYGPIPS----------SLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       447 L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~----------~l~~l~~L~~L~ls~n~l~  506 (581)
                      |++|++++|++++..+ ..+..+++|++|++++|++.+.+|.          .+..+++|+.||  +|.++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7777777777763222 3566777777777777777665554          267778888776  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.1e-13  Score=124.39  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=80.8

Q ss_pred             ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922          424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN  503 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n  503 (581)
                      +.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..|..+++|+.|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            46777777777 4665553  67788888888888766777778888888888888887666666778888888888888


Q ss_pred             ccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922          504 NLSGEIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       504 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      ++++..+..|..+++|++|++++|++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            88876666778888888888888888765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.49  E-value=1.8e-12  Score=132.83  Aligned_cols=129  Identities=9%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc-----ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCc
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS-----GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLI  375 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  375 (581)
                      +|+.+.+. +.++..-...|.++++|+.+++.+|.+.     .....+|.+|++|+.+++.+ .++..-...|.+|.+|+
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            44445442 2233333445566666666666665443     23345566666666666663 35444455666666677


Q ss_pred             EEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcc
Q 035922          376 QLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF  433 (581)
Q Consensus       376 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l  433 (581)
                      .+++..+ ++..-+..|.++ +|+.+++.+|......+..+..++.-+..|.+..+.+
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            6666444 443445566666 6777777666665333344444432225566665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=3.4e-12  Score=130.75  Aligned_cols=151  Identities=9%  Similarity=0.074  Sum_probs=103.8

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCccc-----ccCCccCCCCCCCc
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS-----GNIPLSVGNLKMLI  375 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~  375 (581)
                      +|+.+++..+ ++..-..+|.+ .+|+.+.+. +.++.....+|.+|++|+.+++.+|.+.     ...+..|.+|++|+
T Consensus       227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~  303 (401)
T 4fdw_A          227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA  303 (401)
T ss_dssp             TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred             CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence            4444444432 22223344555 678888884 4466556778888889999988887664     34556788888999


Q ss_pred             EEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCC-CCCeeeccC
Q 035922          376 QLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLK-NLGVLDISG  454 (581)
Q Consensus       376 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~  454 (581)
                      .+++.+ .++..-...|.+|.+|+.+++..+ +...-...|.++ +| +.+++++|.+....+..|..++ .++.|++..
T Consensus       304 ~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L-~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          304 RFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI-KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             EECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC-CEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             eEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC-CEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            998884 466556677888888999888655 553444566666 77 7889988887755556676664 678888887


Q ss_pred             CcCc
Q 035922          455 NLLS  458 (581)
Q Consensus       455 n~l~  458 (581)
                      +.+.
T Consensus       380 ~~~~  383 (401)
T 4fdw_A          380 ESVE  383 (401)
T ss_dssp             GGHH
T ss_pred             HHHH
Confidence            7654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=2.1e-13  Score=122.88  Aligned_cols=106  Identities=17%  Similarity=0.199  Sum_probs=84.2

Q ss_pred             ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922          424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN  503 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n  503 (581)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++++..|..|..+++|+.|+|++|++.+..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            46778888776 5666554  77888888888888777778888888888888888888666666788888888888888


Q ss_pred             ccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922          504 NLSGEIPKFLAGFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       504 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  532 (581)
                      ++.+..+..+..+++|++|++++|++...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            88866666688888888888888888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=6.4e-12  Score=129.02  Aligned_cols=327  Identities=10%  Similarity=0.014  Sum_probs=148.0

Q ss_pred             cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922           90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI  169 (581)
Q Consensus        90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (581)
                      +|.++++|+.+.+.. .++..-..+|.++++|+.+++..+ ++..-..+|..+++|+.+.+..+ +.......|.++..+
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            455666666666653 254444455666666666666543 43333445666666666555433 222333445444433


Q ss_pred             CEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccc
Q 035922          170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN  249 (581)
Q Consensus       170 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  249 (581)
                      +.........  .-...|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++..-...+.+            
T Consensus       143 ~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~------------  206 (394)
T 4fs7_A          143 EITIPEGVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE------------  206 (394)
T ss_dssp             EEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT------------
T ss_pred             ccccCccccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcc------------
Confidence            3222222211  223346666666666665432 2233345556666666655443 22111222223            


Q ss_pred             cCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEE
Q 035922          250 RMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRL  329 (581)
Q Consensus       250 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  329 (581)
                                   +..|+.+.+..+...             +.+..... ..|+.+.+.... +..-...+..+..++.+
T Consensus       207 -------------~~~L~~i~~~~~~~~-------------i~~~~~~~-~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~  258 (394)
T 4fs7_A          207 -------------CILLENMEFPNSLYY-------------LGDFALSK-TGVKNIIIPDSF-TELGKSVFYGCTDLESI  258 (394)
T ss_dssp             -------------CTTCCBCCCCTTCCE-------------ECTTTTTT-CCCCEEEECTTC-CEECSSTTTTCSSCCEE
T ss_pred             -------------ccccceeecCCCceE-------------eehhhccc-CCCceEEECCCc-eecccccccccccceeE
Confidence                         333333322211100             00011111 144444443221 11222234455555555


Q ss_pred             EeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccc
Q 035922          330 YVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS  409 (581)
Q Consensus       330 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  409 (581)
                      .+..+... .....|..+..++.+....+.+.   ...|..+.+|+.+.+.++ ++..-...|.+|.+|+.+++      
T Consensus       259 ~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~l------  327 (394)
T 4fs7_A          259 SIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDL------  327 (394)
T ss_dssp             EECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECC------
T ss_pred             EcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEe------
Confidence            55544322 33344455555555555443321   223444555555555433 22222334444555554444      


Q ss_pred             ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccc
Q 035922          410 GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSL  489 (581)
Q Consensus       410 ~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  489 (581)
                                         ..+ ++..-..+|.++.+|+.+++..+ ++..-..+|.+|++|+.+++..+ +. .+..+|
T Consensus       328 -------------------p~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F  384 (394)
T 4fs7_A          328 -------------------PYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDF  384 (394)
T ss_dssp             -------------------CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGB
T ss_pred             -------------------CCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhhee
Confidence                               322 33223345556666666666554 44344456666666666666543 21 233456


Q ss_pred             cCCCCCCE
Q 035922          490 RSLRGLSV  497 (581)
Q Consensus       490 ~~l~~L~~  497 (581)
                      .++++|+.
T Consensus       385 ~~c~~L~~  392 (394)
T 4fs7_A          385 EDTTKFKW  392 (394)
T ss_dssp             CTTCEEEE
T ss_pred             cCCCCCcE
Confidence            66665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=3.7e-12  Score=130.80  Aligned_cols=332  Identities=11%  Similarity=0.023  Sum_probs=157.8

Q ss_pred             CCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcC
Q 035922          110 AIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGN  189 (581)
Q Consensus       110 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  189 (581)
                      +-..+|.++++|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++......|.++.+|+.+.+..+ +...-...|.+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            33456778888888888643 55455567888888888888654 44444556777777777655443 22122233443


Q ss_pred             CCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCcee
Q 035922          190 LSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHF  269 (581)
Q Consensus       190 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  269 (581)
                      +..++........  ......|.++++|+.+.+.++..                          .++...+..+.+|+.+
T Consensus       139 ~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~~--------------------------~I~~~~F~~c~~L~~i  190 (394)
T 4fs7_A          139 CDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSME--------------------------TLHNGLFSGCGKLKSI  190 (394)
T ss_dssp             CCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTCC--------------------------EECTTTTTTCTTCCBC
T ss_pred             ccccccccCcccc--ccchhhhcccCCCcEEecCCccc--------------------------eeccccccCCCCceEE
Confidence            3322222111111  11122344444444443322211                          1122222223333333


Q ss_pred             eccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCC
Q 035922          270 GIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQN  349 (581)
Q Consensus       270 ~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  349 (581)
                      .+                                    ..+ ++..-...+.++..|+.+.+..+...  +........+
T Consensus       191 ~l------------------------------------~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~  231 (394)
T 4fs7_A          191 KL------------------------------------PRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG  231 (394)
T ss_dssp             CC------------------------------------CTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred             Ec------------------------------------CCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence            22                                    221 11111223444444554444433221  1112223345


Q ss_pred             CCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcC
Q 035922          350 LRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLS  429 (581)
Q Consensus       350 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls  429 (581)
                      |+.+.+.... +......|..+..++.+.+..+... .....+..+..++.+....+.+.   ...+..+.++ +.+.+.
T Consensus       232 l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L-~~i~l~  305 (394)
T 4fs7_A          232 VKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSL-TEVKLL  305 (394)
T ss_dssp             CCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTC-CEEEEC
T ss_pred             CceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccc-cccccc
Confidence            5555554322 2122334455555555555544322 23334555555555554433221   1233344444 455554


Q ss_pred             CCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccccc
Q 035922          430 RNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEI  509 (581)
Q Consensus       430 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~  509 (581)
                      .+ ++..-..+|.++.+|+.+++.++ ++..-..+|.+|++|+.+++..+ +...-..+|.++++|+.+++..+ +. .+
T Consensus       306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~  380 (394)
T 4fs7_A          306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QY  380 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GG
T ss_pred             cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Eh
Confidence            43 33233445666777777777543 44344556667777777777655 44444456777777777777544 22 23


Q ss_pred             chhhhcCCCCCEE
Q 035922          510 PKFLAGFKLLENV  522 (581)
Q Consensus       510 p~~l~~l~~L~~L  522 (581)
                      ...|.++++|+.+
T Consensus       381 ~~~F~~c~~L~~I  393 (394)
T 4fs7_A          381 RYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGBCTTCEEEEE
T ss_pred             hheecCCCCCcEE
Confidence            3455666655543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=4.4e-13  Score=120.33  Aligned_cols=106  Identities=22%  Similarity=0.252  Sum_probs=83.0

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN  177 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  177 (581)
                      +++++++|.++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            67888888887 4665553  78888888888888777888888888888888888888766666788888888888888


Q ss_pred             cccccCCccCcCCCCCcEEEccCCCCCCc
Q 035922          178 NLTGSIPSSLGNLSSIIRLSLTYNNIARS  206 (581)
Q Consensus       178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  206 (581)
                      ++++..+..+..+++|++|++++|.++..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            88865555677788888888888877543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=8.3e-13  Score=118.93  Aligned_cols=105  Identities=22%  Similarity=0.241  Sum_probs=79.5

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN  177 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  177 (581)
                      +.++++++.++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67888888886 5666554  78888888888888777778888888888888888888665555677888888888888


Q ss_pred             cccccCCccCcCCCCCcEEEccCCCCCC
Q 035922          178 NLTGSIPSSLGNLSSIIRLSLTYNNIAR  205 (581)
Q Consensus       178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~  205 (581)
                      ++++..+..+..+++|++|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            8775444457777777777777777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=1.3e-13  Score=139.81  Aligned_cols=86  Identities=21%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             CCCCeeeccCCcCcc----ccCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCccccc----cchh
Q 035922          445 KNLGVLDISGNLLSG----EIPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSGE----IPKF  512 (581)
Q Consensus       445 ~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~----~p~~  512 (581)
                      ++|++|+|++|.++.    .++..+..+++|++|+|++|.+.+.    +++.+...++|+.|+|++|.++..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            455555555555542    1223334455555555555555432    233444455555555555555432    2233


Q ss_pred             hhcCCCCCEEECcCCCCC
Q 035922          513 LAGFKLLENVNLSYNDLG  530 (581)
Q Consensus       513 l~~l~~L~~L~ls~N~l~  530 (581)
                      +...+.|++||+++|+++
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            344455555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=8.1e-14  Score=141.42  Aligned_cols=168  Identities=17%  Similarity=0.137  Sum_probs=89.8

Q ss_pred             CCCCCEEEeecCcCccccccccc-----CCCCCCeEeccCCcccccCCccC-CCCCCCcEEeecCcccCCCCcccc----
Q 035922          323 LVNLRRLYVWNNKLSGTIPSAIG-----DLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSL----  392 (581)
Q Consensus       323 l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l----  392 (581)
                      .+.|++|++++|.++......+.     ..++|++|++++|.++......+ ..+++|+.|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35677888888877644333332     22567777777776653222222 123455555555555543222221    


Q ss_pred             -cCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc----cCCccccCCCCCCeeeccCCcCccc----cCc
Q 035922          393 -CQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG----SLPIEVGNLKNLGVLDISGNLLSGE----IPI  463 (581)
Q Consensus       393 -~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~  463 (581)
                       ...++|+                         .|++++|.++.    .++..+..+++|++|+|++|.++..    ++.
T Consensus       151 ~~~~~~L~-------------------------~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          151 LHDQCQIT-------------------------TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HSTTCCCC-------------------------EEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhcCCccc-------------------------eeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence             1233444                         45555554432    1233334556666666666666532    244


Q ss_pred             cccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCccccccchhhhc
Q 035922          464 SLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAG  515 (581)
Q Consensus       464 ~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~  515 (581)
                      .+..+++|++|+|++|.+++.    ++..+...++|+.|||++|.++......+..
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            455566677777777776542    3334445667777777777776554444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=1.3e-11  Score=124.49  Aligned_cols=102  Identities=19%  Similarity=0.174  Sum_probs=54.8

Q ss_pred             EECCCC-cccccCCcchhcccCCcceeEcCC-CcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCC
Q 035922          401 INFSKN-NLSGTIPPQLFGLSSLSISLDLSR-NHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG  478 (581)
Q Consensus       401 L~ls~n-~l~~~~p~~~~~l~~L~~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  478 (581)
                      ++++++ .++ .+|. +..+.+| +.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L-~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCC-SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCe-eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            455555 454 4555 5555555 5555554 555544445555555555555555555555555555555555555555


Q ss_pred             CcCcccCcccccCCCCCCEEECCCCccc
Q 035922          479 NKFYGPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       479 n~l~~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      |+|.+..+..|..++ |+.|++++|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            555544444444443 555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.26  E-value=6.5e-10  Score=114.01  Aligned_cols=129  Identities=10%  Similarity=0.170  Sum_probs=66.2

Q ss_pred             hccCCC-CCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCc---CcccCCcccCCCCCCCEEECCCCcccccCCccCcC
Q 035922          114 EIGRLR-RLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQ---LLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGN  189 (581)
Q Consensus       114 ~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  189 (581)
                      +|.+++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..|.   ++..-..+|..+.+|+.+.+..+ ++..-...+..
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            444443 3666666543 443444556666666666665542   33333445666666666555443 22233344566


Q ss_pred             CCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcc
Q 035922          190 LSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVV  247 (581)
Q Consensus       190 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~  247 (581)
                      +.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++ .+....+....|+.+.+.
T Consensus       136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip  190 (394)
T 4gt6_A          136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIP  190 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEEC
T ss_pred             hcccccccccce-eeeecccceecccccccccccce-ee-EeccccccccceeEEEEC
Confidence            666666666433 22333345566666666666543 22 333333344556666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=2.1e-11  Score=122.84  Aligned_cols=129  Identities=21%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             ceeEcCCC-cccccCCccccCCCCCCeeeccC-CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECC
Q 035922          424 ISLDLSRN-HFTGSLPIEVGNLKNLGVLDISG-NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA  501 (581)
Q Consensus       424 ~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  501 (581)
                      ..++++++ +++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|++.+..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35799998 898 5888 99999999999996 99998777899999999999999999999999999999999999999


Q ss_pred             CCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccC---CcCcccccCCCCCccC
Q 035922          502 QNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIK---NSSATSVMGNSKLCGG  557 (581)
Q Consensus       502 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~---~l~~l~~~gN~~lcg~  557 (581)
                      +|+|++..+..+..++ |++|++++|++... .. ...+.   ......+..+...|..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~-c~-l~~~~~~~~~~~~~l~~~~~~C~~  144 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS-CA-LRWLQRWEEEGLGGVPEQKLQCHG  144 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC-GG-GHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCC-Cc-cHHHHHHHHhCcccccccCCCCCC
Confidence            9999977777777776 99999999999864 32 11111   1223344556667754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.16  E-value=7.2e-09  Score=106.16  Aligned_cols=132  Identities=12%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             ccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCC
Q 035922          390 SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCT  469 (581)
Q Consensus       390 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  469 (581)
                      ..|..+..|+.+.+..+... .-...+..+..| +.+.+. +.++..-..+|.++.+|+.++|..+ ++..-..+|.+|+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L-~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL-QDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC-CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ceeeecccccEEecccccce-ecCccccccccc-ccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            34555566666655443322 223334444555 555554 2333233445666667777776644 4433445666777


Q ss_pred             CCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCC
Q 035922          470 SLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL  529 (581)
Q Consensus       470 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l  529 (581)
                      +|+.+.+..+ +...-..+|.++++|+.+++.++....   ..+.....|+.+.+..|.+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            7777777543 443444567777777777776664321   3455566666666655443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=4e-10  Score=113.31  Aligned_cols=84  Identities=17%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             CCCCCCeeeccCCcCccccCcccc---CCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCccccccchhhhc
Q 035922          443 NLKNLGVLDISGNLLSGEIPISLG---SCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAG  515 (581)
Q Consensus       443 ~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~  515 (581)
                      .+++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            467777777777777643333332   467777777777777653    3334455677777777777776544444443


Q ss_pred             -CCCCCEEECcCCC
Q 035922          516 -FKLLENVNLSYND  528 (581)
Q Consensus       516 -l~~L~~L~ls~N~  528 (581)
                       +  ...++++.++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3456776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.95  E-value=6.4e-10  Score=111.81  Aligned_cols=178  Identities=15%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             cCCCCCCEEEeecCcCc---------ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccc
Q 035922          321 GKLVNLRRLYVWNNKLS---------GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS  391 (581)
Q Consensus       321 ~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  391 (581)
                      ..+++|+.|.+......         +.+...+..+|+|+.|++++|.-. .++. + ..++|+.|++..|.+.......
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            34556666666443221         123344455667777777665211 1222 2 2567777777766655332222


Q ss_pred             cc--CCCCCcEEECCC--Cccccc-----CCcch--hcccCCcceeEcCCCcccccCCcccc---CCCCCCeeeccCCcC
Q 035922          392 LC--QCKSLIGINFSK--NNLSGT-----IPPQL--FGLSSLSISLDLSRNHFTGSLPIEVG---NLKNLGVLDISGNLL  457 (581)
Q Consensus       392 l~--~l~~L~~L~ls~--n~l~~~-----~p~~~--~~l~~L~~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l  457 (581)
                      +.  .+++|+.|+|+.  +...+.     +...+  ..+++| +.|++.+|.+.+..+..+.   .+++|++|+|+.|.+
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~L-r~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL-KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTC-CEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCc-CEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            32  566777776642  111111     11111  235677 7888888877654333332   478899999999988


Q ss_pred             ccc----cCccccCCCCCcEEECCCCcCcccCcccccC-CCCCCEEECCCCc
Q 035922          458 SGE----IPISLGSCTSLEKLLMQGNKFYGPIPSSLRS-LRGLSVWDFAQNN  504 (581)
Q Consensus       458 ~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~ls~n~  504 (581)
                      ++.    ++..+..+++|+.|++++|.++...-..+.. +  ...++++.++
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            763    3445567889999999999887655444543 3  3568888887

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.91  E-value=2.7e-07  Score=93.88  Aligned_cols=67  Identities=7%  Similarity=0.060  Sum_probs=30.2

Q ss_pred             ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCC
Q 035922          424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSL  492 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  492 (581)
                      +.+.+.++.++..-..+|.++.+|+.++|..+ ++..-..+|.+|++|+.+.+..+ ++..-..+|.++
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            34444444443233344555555555555433 33233345555566665555433 332223344444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.86  E-value=4e-07  Score=92.56  Aligned_cols=150  Identities=11%  Similarity=0.097  Sum_probs=66.9

Q ss_pred             CCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcce
Q 035922          346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS  425 (581)
Q Consensus       346 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~  425 (581)
                      ....+..+.+...... .....+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...+..+..+ +.
T Consensus       192 ~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~~  267 (379)
T 4h09_A          192 AAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-KT  267 (379)
T ss_dssp             TTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-CE
T ss_pred             ccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-cc
Confidence            3344444444332221 22334445555555555433 22222334455555555555443 221222233334444 44


Q ss_pred             eEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECC
Q 035922          426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA  501 (581)
Q Consensus       426 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  501 (581)
                      +.+..+ +...-...|.++.+|+.+++.++.++..-..+|.+|++|+.+.|..+ +...-..+|.++++|+.+.+.
T Consensus       268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            444332 22222334555555555555555555333445555555555555433 332333455555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=2.1e-08  Score=90.88  Aligned_cols=89  Identities=17%  Similarity=0.199  Sum_probs=49.2

Q ss_pred             cCCCCCCeeeccCCcCccc----cCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEEC--CCCccccc---
Q 035922          442 GNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDF--AQNNLSGE---  508 (581)
Q Consensus       442 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l--s~n~l~~~---  508 (581)
                      ...++|++|+|++|++...    +...+...++|++|+|++|.+.+.    +.+.+...+.|+.|++  ++|.+...   
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3445555566666555431    223344445666666666666533    3344555566666666  66666543   


Q ss_pred             -cchhhhcCCCCCEEECcCCCCC
Q 035922          509 -IPKFLAGFKLLENVNLSYNDLG  530 (581)
Q Consensus       509 -~p~~l~~l~~L~~L~ls~N~l~  530 (581)
                       +.+.+...+.|++|++++|.+.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence             3344455566777777776653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=4.4e-08  Score=88.71  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=69.8

Q ss_pred             ccCCCCCcEEECCCC-ccccc----CCcchhcccCCcceeEcCCCccccc----CCccccCCCCCCeeeccCCcCccc--
Q 035922          392 LCQCKSLIGINFSKN-NLSGT----IPPQLFGLSSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSGE--  460 (581)
Q Consensus       392 l~~l~~L~~L~ls~n-~l~~~----~p~~~~~l~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~--  460 (581)
                      +...+.|++|++++| .+...    +...+...+++ ++|+|++|.+...    +...+...++|++|+|++|.|+..  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L-~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYV-KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSC-CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCc-CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            344555555555555 44321    22333344455 5666666666432    233344556777888888877642  


Q ss_pred             --cCccccCCCCCcEEEC--CCCcCccc----CcccccCCCCCCEEECCCCccc
Q 035922          461 --IPISLGSCTSLEKLLM--QGNKFYGP----IPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       461 --~p~~l~~l~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                        +...+...++|++|+|  ++|.+...    +.+.+...+.|+.|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              4556667778888888  77888654    3345566688888888888875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=5.1e-08  Score=92.91  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             cCCCCCCeeeccCCcCcc--ccCccccCCCCCcEEECCCCcCcccCcccccCCC--CCCEEECCCCccccccc-------
Q 035922          442 GNLKNLGVLDISGNLLSG--EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLR--GLSVWDFAQNNLSGEIP-------  510 (581)
Q Consensus       442 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~ls~n~l~~~~p-------  510 (581)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++.+.  +.+..+.  +|+.|++++|.+++.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            345566666666666664  3344555666666666666666543  2223333  66666666666665443       


Q ss_pred             hhhhcCCCCCEEE
Q 035922          511 KFLAGFKLLENVN  523 (581)
Q Consensus       511 ~~l~~l~~L~~L~  523 (581)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2355566666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=7.2e-08  Score=91.84  Aligned_cols=101  Identities=21%  Similarity=0.213  Sum_probs=72.5

Q ss_pred             CCCCCe--eeccCCcCc---cccCccccCCCCCcEEECCCCcCcc--cCcccccCCCCCCEEECCCCccccccchhhhcC
Q 035922          444 LKNLGV--LDISGNLLS---GEIPISLGSCTSLEKLLMQGNKFYG--PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF  516 (581)
Q Consensus       444 l~~L~~--L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l  516 (581)
                      .+.|+.  ++++.|+..   +.++....++++|+.|+|++|++.+  .+|..+..+++|+.|+|++|.+.+.  ..+..+
T Consensus       140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l  217 (267)
T 3rw6_A          140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI  217 (267)
T ss_dssp             CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred             CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence            344444  677777433   2222233578999999999999987  4567778999999999999999865  334445


Q ss_pred             C--CCCEEECcCCCCCCCCCCC--------ccccCCcCccc
Q 035922          517 K--LLENVNLSYNDLGARYVPT--------EGVIKNSSATS  547 (581)
Q Consensus       517 ~--~L~~L~ls~N~l~~~~ip~--------~~~~~~l~~l~  547 (581)
                      .  +|++|++++|++.+. +|.        ...+++|+.++
T Consensus       218 ~~l~L~~L~L~~Npl~~~-~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDT-FRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TTSCCSEEECTTSTTGGG-CSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcceEEccCCcCccc-cCcchhHHHHHHHHCcccCeEC
Confidence            4  899999999999987 764        23566666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=7.2e-07  Score=78.77  Aligned_cols=83  Identities=12%  Similarity=0.048  Sum_probs=41.2

Q ss_pred             CCCeeeccCCcCccccCccccCCCCCcEEECCCCc-CcccCcccccCC----CCCCEEECCCCc-cccccchhhhcCCCC
Q 035922          446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSL----RGLSVWDFAQNN-LSGEIPKFLAGFKLL  519 (581)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~ls~n~-l~~~~p~~l~~l~~L  519 (581)
                      .|++||+++|.++..--..+..+++|+.|+|++|. +++..-..+..+    ++|+.|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555544333444555555555555553 443333333332    245566665553 544333445555666


Q ss_pred             CEEECcCCC
Q 035922          520 ENVNLSYND  528 (581)
Q Consensus       520 ~~L~ls~N~  528 (581)
                      ++|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=1.7e-06  Score=76.35  Aligned_cols=83  Identities=8%  Similarity=0.010  Sum_probs=60.4

Q ss_pred             CCcceeEcCCCcccccCCccccCCCCCCeeeccCCc-CccccCccccCC----CCCcEEECCCCc-CcccCcccccCCCC
Q 035922          421 SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL-LSGEIPISLGSC----TSLEKLLMQGNK-FYGPIPSSLRSLRG  494 (581)
Q Consensus       421 ~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~  494 (581)
                      .+ +.||+++|.++..--..+..+++|++|+|++|. ++..--..+..+    ++|++|+|++|. +++.--..+..+++
T Consensus        62 ~L-~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KI-QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CE-EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eE-eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            45 677777777765555556778888888888884 665444445553    478899998885 77655566778899


Q ss_pred             CCEEECCCCc
Q 035922          495 LSVWDFAQNN  504 (581)
Q Consensus       495 L~~L~ls~n~  504 (581)
                      |+.|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999885

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.51  E-value=8.6e-05  Score=66.75  Aligned_cols=89  Identities=13%  Similarity=0.158  Sum_probs=46.6

Q ss_pred             ccCCCCCCeeeccCCcCcc----ccCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCC---cccc--
Q 035922          441 VGNLKNLGVLDISGNLLSG----EIPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQN---NLSG--  507 (581)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n---~l~~--  507 (581)
                      +..-+.|+.|+|++|++..    .+.+.+..-++|+.|+|++|.|.+.    +-+.+..-+.|+.|+|++|   .+..  
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            3344556666666666543    2223334455666666666666532    2233444455666666654   2222  


Q ss_pred             --ccchhhhcCCCCCEEECcCCCC
Q 035922          508 --EIPKFLAGFKLLENVNLSYNDL  529 (581)
Q Consensus       508 --~~p~~l~~l~~L~~L~ls~N~l  529 (581)
                        .+.+.+..-+.|+.|++++|.+
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCcCeEeccCCCc
Confidence              2334555566677777666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.30  E-value=0.00013  Score=65.54  Aligned_cols=112  Identities=13%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             CCCCCcEEECCCC-cccc----cCCcchhcccCCcceeEcCCCccccc----CCccccCCCCCCeeeccCCcCcc----c
Q 035922          394 QCKSLIGINFSKN-NLSG----TIPPQLFGLSSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSG----E  460 (581)
Q Consensus       394 ~l~~L~~L~ls~n-~l~~----~~p~~~~~l~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~  460 (581)
                      .-+.|++|++++| ++..    .+...+.....+ +.|+|++|+|...    +...+..-+.|++|+|++|.|+.    .
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L-~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI-EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC-CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCc-CEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            3445555555553 4431    122333444455 5666666666532    22334445677777777777764    2


Q ss_pred             cCccccCCCCCcEEECCCC---cCcc----cCcccccCCCCCCEEECCCCccc
Q 035922          461 IPISLGSCTSLEKLLMQGN---KFYG----PIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n---~l~~----~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      +.+.+..-+.|++|+|++|   .+..    .+.+.+..-+.|+.|+++.|.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            3344556677888888754   3332    23445566677888888777653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.0015  Score=54.69  Aligned_cols=58  Identities=16%  Similarity=0.190  Sum_probs=47.0

Q ss_pred             cEEECCCCcCc-ccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922          472 EKLLMQGNKFY-GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       472 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|++|+|++|++.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47889999886 35665432  469999999999997777788999999999999998863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.71  E-value=0.003  Score=52.81  Aligned_cols=57  Identities=19%  Similarity=0.317  Sum_probs=46.1

Q ss_pred             CeeeccCCcCc-cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922          448 GVLDISGNLLS-GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       448 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888886 35665432  47999999999999777778899999999999999774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	581
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 96.6 bits (239), Expect = 3e-22
 Identities = 73/389 (18%), Positives = 136/389 (34%), Gaps = 27/389 (6%)

Query: 93  NLSFLRRLHLDNNNFTHAIPP-EIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLS 151
            L+   +  L   N T  +   ++ ++  L+   L   SI G     +   +N+  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 152 VNQLLGNIPPEFGSLSKIKDLR-SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT 210
            NQL    P    +L+K+ D+  +       +  ++L NL+ +   +    +I      T
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
                 LS  ++        + S            +        +      +        
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 271 IVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY 330
           +      E L+  +N    + P       T L  L L+ N++       +  L NL  L 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
           + NN++S   P  +  L  L  L +  N+ S   PL+     +     +  N  Q    S
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDIS 301

Query: 391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL 450
            +   K+L  +    NN+S   P  +  L+ L   L  + N  +      + NL N+  L
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQ-RLFFANNKVSD--VSSLANLTNINWL 356

Query: 451 DISGNLLSGEIPISLGSCTSLEKLLMQGN 479
               N +S   P  L + T + +L +   
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 95.1 bits (235), Expect = 1e-21
 Identities = 75/373 (20%), Positives = 128/373 (34%), Gaps = 43/373 (11%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSS-- 234
            N+T ++  +  +L  +  L      I +SI D + YL NL+ ++   N L+   P    
Sbjct: 32  TNVTDTVSQT--DLDQVTTLQADRLGI-KSI-DGVEYLNNLTQINFSNNQLTDITPLKNL 87

Query: 235 ----IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGL 290
                   ++     +       N+     F         +        L L+ N    +
Sbjct: 88  TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI 147

Query: 291 IPECISNFSTTLASLFLDNNKIFGS----------------IPPGIGKLVNLRRLYVWNN 334
                      L+      +    +                    + KL NL  L   NN
Sbjct: 148 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 207

Query: 335 KLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQ 394
           ++S   P  I    NL  L ++GN+       ++ +L  L  L+++ N +    P  L  
Sbjct: 208 QISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSG 261

Query: 395 CKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISG 454
              L  +    N +S   P     L+ L+   +L  N         + NLKNL  L +  
Sbjct: 262 LTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 455 NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLA 514
           N +S   P+   S T L++L    NK      SSL +L  ++      N +S   P  LA
Sbjct: 317 NNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LA 370

Query: 515 GFKLLENVNLSYN 527
               +  + L+  
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 9e-09
 Identities = 54/262 (20%), Positives = 103/262 (39%), Gaps = 25/262 (9%)

Query: 280 LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGT 339
            +L   N    + +  ++    + +L  D   I      G+  L NL ++   NN+L+  
Sbjct: 27  TVLGKTNVTDTVSQ--TDL-DQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDI 81

Query: 340 IPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIP---------- 389
            P  + +L  L  + M+ N+ +   PL+       + L  ++      +           
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 390 --SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNL 447
             +++    +L G+   +    G     L  L++L+    L  +    S    +  L NL
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 448 GVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG 507
             L  + N +S   P+ +   T+L++L + GN+       +L SL  L+  D A N +S 
Sbjct: 200 ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 508 EIPKFLAGFKLLENVNLSYNDL 529
             P  L+G   L  + L  N +
Sbjct: 256 LAP--LSGLTKLTELKLGANQI 275

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 68  WNESSHFCKWHESLKLAG---SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGL 124
                   K    L L     S    + +L+ L+RL   NN  +      +  L  +  L
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 125 TLNNNSIGGEIPATMSRCSNIILMDLSVN 153
           +  +N I    P  ++  + I  + L+  
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 6e-06
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 67  SWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTL 126
           S           E  +        I NL  L  L L  NN +   P  +  L +L+ L  
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 336

Query: 127 NNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDL 172
            NN +     ++++  +NI  +    NQ+    P    +L++I  L
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 92.5 bits (228), Expect = 3e-21
 Identities = 75/348 (21%), Positives = 125/348 (35%), Gaps = 64/348 (18%)

Query: 43  NETDREALLEFKSKITVDPFGVLGSWNESSHFC--KWH-------------ESLKLAG-- 85
           N  D++ALL+ K  +  +P   L SW  ++  C   W               +L L+G  
Sbjct: 4   NPQDKQALLQIKKDLG-NP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 86  -----SISPYIGNLSFLRRLHLDNN-NFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATM 139
                 I   + NL +L  L++    N    IPP I +L +L  L + + ++ G IP  +
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 140 SRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLT 199
           S+   ++ +D S N L G +PP   SL  +  +    N ++G+IP S G+ S +      
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 200 YNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDF 259
             N                                      +T              +D 
Sbjct: 182 SRN-------------------------------------RLTGKIPPTFANLNLAFVDL 204

Query: 260 GFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319
              +       +  ++     +    N        +         L L NN+I+G++P G
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN-GLDLRNNRIYGTLPQG 263

Query: 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLS 367
           + +L  L  L V  N L G IP   G+LQ   +   + N+     PL 
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 2e-16
 Identities = 64/284 (22%), Positives = 96/284 (33%), Gaps = 21/284 (7%)

Query: 209 DTLGYLENLSFLSLGGNMLSG--TIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNL 266
           DT      ++ L L G  L     IPSS+ N   +    +                L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 267 QHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNL 326
            +  I   N +  +    +    L+    S             N + G++PP I  L NL
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSY------------NALSGTLPPSISSLPNL 151

Query: 327 RRLYVWNNKLSGTIPSAIGDLQNLRM-LGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ 385
             +    N++SG IP + G    L   + +S NR +G IP +  NL +            
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLK 445
                      +        +         L         LDL  N   G+LP  +  LK
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS---KNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY--GPIPS 487
            L  L++S N L GEIP   G+    +      NK     P+P+
Sbjct: 269 FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.1 bits (149), Expect = 4e-11
 Identities = 70/259 (27%), Positives = 103/259 (39%), Gaps = 26/259 (10%)

Query: 296 SNFSTTLASLFLDNNKIFG--SIPPGIGKLVNLRRLYVWNN-KLSGTIPSAIGDLQNLRM 352
              +  + +L L    +     IP  +  L  L  LY+     L G IP AI  L  L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTI 412
           L ++    SG IP  +  +K L+ L+ S N L GT+P S+    +L+GI F  N +SG I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 413 PPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL---------------------- 450
           P      S L  S+ +SRN  TG +P    NL    V                       
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 451 DISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIP 510
                         +G   +L  L ++ N+ YG +P  L  L+ L   + + NNL GEIP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 511 KFLAGFKLLENVNLSYNDL 529
           +     +  +    + N  
Sbjct: 286 Q-GGNLQRFDVSAYANNKC 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.0 bits (214), Expect = 2e-19
 Identities = 57/234 (24%), Positives = 86/234 (36%), Gaps = 6/234 (2%)

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355
            +     A L L NNKI          L NL  L + NNK+S   P A   L  L  L +
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ 415
           S N+           L+ L   E     ++ ++ + L Q   +          SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGA 145

Query: 416 LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLL 475
             G+  LS    ++  + T    I  G   +L  L + GN ++     SL    +L KL 
Sbjct: 146 FQGMKKLSYI-RIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 476 MQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
           +  N        SL +   L       N L  ++P  LA  K ++ V L  N++
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 56/339 (16%), Positives = 105/339 (30%), Gaps = 52/339 (15%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
           LR +   +      +P ++        L L NN I            N+  + L  N++ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLEN 216
              P  F  L K++ L    N L          L  +         + +S+ + L  +  
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 217 LSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNF 276
           +  L       SG    +                            +  L +  I   N 
Sbjct: 129 VE-LGTNPLKSSGIENGAFQG-------------------------MKKLSYIRIADTNI 162

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKL 336
           T +                     +L  L LD NKI       +  L NL +L +  N +
Sbjct: 163 TTIP---------------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 337 SGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC--- 393
           S     ++ +  +LR L ++ N+    +P  + + K +  + +  N +     +  C   
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 394 ---QCKSLIGINFSKNNLS-GTIPPQLFGLSSLSISLDL 428
              +  S  G++   N +    I P  F    +  ++ L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 43/262 (16%), Positives = 87/262 (33%), Gaps = 24/262 (9%)

Query: 82  KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141
           K+         NL  L  L L NN  +   P     L +L  L L+ N +  E+P  M +
Sbjct: 42  KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPK 100

Query: 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201
               + +  +    +        +   + +L +     +G    +   +  +  + +   
Sbjct: 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160

Query: 202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGF 261
           NI  +IP   G   +L+ L L GN ++    +S+   +++    +  N +          
Sbjct: 161 NI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-------- 209

Query: 262 TLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFG------S 315
                        N   L  L+ NN   +           +  ++L NN I         
Sbjct: 210 ------VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 316 IPPGIGKLVNLRRLYVWNNKLS 337
            P    K  +   + +++N + 
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 5/183 (2%)

Query: 68  WNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLN 127
                        +           N   +  L  +    +         +++L  + + 
Sbjct: 99  PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 158

Query: 128 NNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSL 187
           + +I   IP  +    ++  + L  N++          L+ +  L    N+++     SL
Sbjct: 159 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215

Query: 188 GNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVV 247
            N   +  L L  N +   +P  L   + +  + L  N +S  I S+ F      T    
Sbjct: 216 ANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKAS 273

Query: 248 LNR 250
            + 
Sbjct: 274 YSG 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 2e-17
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 20/283 (7%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
             L  ++P  +   ++  R+ L  N I+     +     NL+ L L  N+L+    ++  
Sbjct: 21  QGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECIS 296
             + +    +  N    ++       L  L    +            D      +   + 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL------------DRCGLQELGPGLF 125

Query: 297 NFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356
                L  L+L +N +          L NL  L++  N++S     A   L +L  L + 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 357 GNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQL 416
            NR +   P +  +L  L+ L +  N L      +L   ++L  +  + N          
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--A 243

Query: 417 FGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459
             L +       S +    SLP     L    +  ++ N L G
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 2e-16
 Identities = 51/266 (19%), Positives = 83/266 (31%), Gaps = 7/266 (2%)

Query: 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLV 324
            LQ   +     ++ + L+ N    +                  N           G  +
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL 384
             +     N +L    P+    L  L  L +         P     L  L  L + +N L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 385 QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNL 444
           Q     +     +L  +    N +S        GL SL     L +N      P    +L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRDL 200

Query: 445 KNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG-LSVWDFAQN 503
             L  L +  N LS     +L    +L+ L +  N +        R L   L  +  + +
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSS 258

Query: 504 NLSGEIPKFLAGFKLLENVNLSYNDL 529
            +   +P+ LAG  L     L+ NDL
Sbjct: 259 EVPCSLPQRLAGRDLK---RLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 1e-14
 Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 18/267 (6%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
            +R+ L  N  +H         R L  L L++N +     A  +  + +  +DLS N  L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 157 GNI-PPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLE 215
            ++ P  F  L ++  L      L    P     L+++  L L  N +     DT   L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 216 NLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN 275
           NL+ L L GN +S     +     S+    +  NR+    P  F      +  +      
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY------ 207

Query: 276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK 335
                     N    +P         L  L L++N               L++    +++
Sbjct: 208 -------LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSE 259

Query: 336 LSGTIPSAIGDLQNLRMLGMSGNRFSG 362
           +  ++P     L    +  ++ N   G
Sbjct: 260 VPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 3e-14
 Identities = 55/303 (18%), Positives = 91/303 (30%), Gaps = 43/303 (14%)

Query: 205 RSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP 264
           +++P  +        + L GN +S    +S     ++T   +  N +       F     
Sbjct: 24  QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLV 324
             Q                       +     +    L +L LD   +    P     L 
Sbjct: 82  LEQLDLSDNAQL------------RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL 384
            L+ LY+ +N L         DL NL  L + GNR S     +   L  L +L + +N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 385 QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNL 444
               P +      L+ +    NNLS      L  L +L   L L+ N +           
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ-YLRLNDNPWVCDCRA-RPLW 247

Query: 445 KNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNN 504
             L     S + +   +P                           + L G  +   A N+
Sbjct: 248 AWLQKFRGSSSEVPCSLP---------------------------QRLAGRDLKRLAAND 280

Query: 505 LSG 507
           L G
Sbjct: 281 LQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 9e-12
 Identities = 56/278 (20%), Positives = 98/278 (35%), Gaps = 20/278 (7%)

Query: 134 EIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSI 193
            +P  +   +    + L  N++       F +   +  L    N L     ++   L+ +
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 194 IRLSLTYNNIARSI-PDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQ 252
            +L L+ N   RS+ P T   L  L  L L    L    P      +++    +  N +Q
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 253 GNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKI 312
                 F   L NL H           L L+ N    +          +L  L L  N++
Sbjct: 143 ALPDDTF-RDLGNLTH-----------LFLHGNRISSVPERAFRGL-HSLDRLLLHQNRV 189

Query: 313 FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLK 372
               P     L  L  LY++ N LS     A+  L+ L+ L ++ N +  +         
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWA 248

Query: 373 MLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410
            L +   S + +  ++P  L   + L     + N+L G
Sbjct: 249 WLQKFRGSSSEVPCSLPQRL-AGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 9e-12
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 2/202 (0%)

Query: 68  WNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLN 127
                      ++ +L          L  L  LHLD        P     L  L+ L L 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 128 NNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSL 187
           +N++      T     N+  + L  N++       F  L  +  L    N +    P + 
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 188 GNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVV 247
            +L  ++ L L  NN++    + L  L  L +L L  N       +     + +  F   
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGS 256

Query: 248 LNRMQGNIPLDF-GFTLPNLQH 268
            + +  ++P    G  L  L  
Sbjct: 257 SSEVPCSLPQRLAGRDLKRLAA 278

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 24/210 (11%)

Query: 292 PECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLR 351
           P C  +   +   +  D   +  ++PP + K  +   L++  N L     + +     L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 352 MLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ--------------------GTIPSS 391
            L +     +         +   + L  ++                         ++P  
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 392 LCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLD 451
             +    +   + K N   T+PP L   +     L L+ N+ T      +  L+NL  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 452 ISGNLLSGEIPISLGSCTSLEKLLMQGNKF 481
           +  N L   IP        L    + GN +
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 30/174 (17%), Positives = 44/174 (25%), Gaps = 46/174 (26%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNS-------------------------- 130
              LHL  N         +    RL  L L+                             
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 131 -------------------IGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD 171
                              +       +     +  + L  N+L    P       K++ 
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 172 LRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGN 225
           L    NNLT      L  L ++  L L  N++  +IP        L F  L GN
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 1/62 (1%)

Query: 68  WNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLN 127
                       +  L    +  +  L  L  L L  N+    IP        L    L+
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLH 203

Query: 128 NN 129
            N
Sbjct: 204 GN 205

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 9/205 (4%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGT-IPSSI 235
           +N+T ++  +  +L  I  LS     +  +I   + YL NL  L L  N ++      ++
Sbjct: 29  SNVTDTVTQA--DLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDNQITDLAPLKNL 84

Query: 236 FNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECI 295
              + +      L  +     L    TL               L  L            I
Sbjct: 85  TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI 144

Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355
           S  +      +L       S    +  L  L  L   +NK+S   P  +  L NL  + +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHL 202

Query: 356 SGNRFSGNIPLSVGNLKMLIQLEVS 380
             N+ S   PL+  N   L  + ++
Sbjct: 203 KNNQISDVSPLA--NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 20/205 (9%)

Query: 307 LDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPL 366
              + +  ++      L  +  L  +   ++      +  L NL  L +  N+ +   PL
Sbjct: 26  AGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPL 81

Query: 367 SVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISL 426
                   ++L  +       I          +      +         L  L      +
Sbjct: 82  KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 141

Query: 427 DL-------------SRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEK 473
                          S  +   S    + NL  L  L    N +S   P  L S  +L +
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIE 199

Query: 474 LLMQGNKFYGPIP-SSLRSLRGLSV 497
           + ++ N+     P ++  +L  +++
Sbjct: 200 VHLKNNQISDVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 28/209 (13%), Positives = 61/209 (29%), Gaps = 24/209 (11%)

Query: 280 LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGT 339
           +    +N    + +  ++    + +L      +  +   G+  L NL  L + +N+++  
Sbjct: 24  IAAGKSNVTDTVTQ--ADLDG-ITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDL 78

Query: 340 IPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE--------------NFLQ 385
            P           L  +  +    I        + +                        
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLK 445
             I +             S  N   +    L  LS L+       N  +   P+   +L 
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA-DDNKISDISPL--ASLP 195

Query: 446 NLGVLDISGNLLSGEIPISLGSCTSLEKL 474
           NL  + +  N +S   P  L + ++L  +
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 387 TIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKN 446
           +  + L     L  +    N +S   P  L  L +L I + L  N  +   P+   N  N
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNL-IEVHLKNNQISDVSPL--ANTSN 218

Query: 447 LGVLDIS 453
           L ++ ++
Sbjct: 219 LFIVTLT 225

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 12/239 (5%)

Query: 269 FGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLR 327
            G + +          +     + E  S F   +  + L N+ I  S   GI  +   L+
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 328 RLYVWNNKLSGTIPSAIGDLQNLRML--------GMSGNRFSGNIPLSVGNLKMLIQLEV 379
            L +   +LS  I + +    NL  L             +   +    +  L +    + 
Sbjct: 75  NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134

Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI 439
           +E  +Q  +         L    + KN     +   +    +L                 
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194

Query: 440 EVGNLKNLGVLDISG-NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSV 497
           E   L  L  L +S    +  E  + LG   +L+ L + G    G +     +L  L +
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 40/285 (14%), Positives = 86/285 (30%), Gaps = 34/285 (11%)

Query: 91  IGNLSFLRRLHLD-NNNFTHAIPPEIGRLRRLRGLTLNNNSIGGE-IPATMSRCSNIILM 148
            G L     +      +F      E     R++ + L+N+ I    +   +S+CS     
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK---- 72

Query: 149 DLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIP 208
                               +++L      L+  I ++L   S+++RL+L+  +      
Sbjct: 73  --------------------LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

Query: 209 DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQH 268
                        L  +         +    +  + ++    + G         L  L  
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172

Query: 269 FGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDN-NKIFGSIPPGIGKLVNLR 327
                 +       +D+                L  L L     I       +G++  L+
Sbjct: 173 RCPNLVHLDL----SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228

Query: 328 RLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLK 372
            L V+     GT+      L +L+   ++ + F+     ++GN K
Sbjct: 229 TLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK 270

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 377 LEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG- 435
           L+++   L   +   L   + +I     ++ +   +  + F    +   +DLS +     
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQ-HMDLSNSVIEVS 61

Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIP 486
           +L   +     L  L + G  LS  I  +L   ++L +L + G   +    
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 3/100 (3%)

Query: 425 SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG- 483
           +LDL+  +    +   + +   +       + +   +     S   ++ + +  +     
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVS 61

Query: 484 PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVN 523
            +   L     L         LS  I   LA    L  +N
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 9/183 (4%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
            ++T ++  +   L+SI ++    ++I       + YL N++ L L GN L+   P +  
Sbjct: 34  KSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANL 89

Query: 237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECIS 296
                        +   ++         +L+H GI   N    L   ++ + G       
Sbjct: 90  KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI 149

Query: 297 NFSTTL--ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
              + L         +     I P +  L  L+ LY+  N +S     A+  L+NL +L 
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLE 206

Query: 355 MSG 357
           +  
Sbjct: 207 LFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 41/198 (20%), Positives = 72/198 (36%), Gaps = 26/198 (13%)

Query: 274 NNFTELLL--LNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYV 331
           + F E +   L   +    + +   N   ++  +  +N+ I      GI  L N+ +L++
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFL 75

Query: 332 WNNKLSGTIPSA---------------IGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQ 376
             NKL+   P A                       +  +       N    +  L  L Q
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 377 LEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS 436
           LE            ++    + +     ++N    I P L GL+ L  +L LS+NH +  
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ-NLYLSKNHIS-D 192

Query: 437 LPIEVGNLKNLGVLDISG 454
           L   +  LKNL VL++  
Sbjct: 193 LR-ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 307 LDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPL 366
           L    +  ++     +L ++ ++   N+ +       I  L N+  L ++GN+ +   PL
Sbjct: 31  LKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPL 86

Query: 367 SVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISL 426
           +  NLK L  L + EN ++                     +L       + GL  L    
Sbjct: 87  A--NLKNLGWLFLDENKVK-------DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 427 DLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIP 486
            L   +   +    +  L  L  L +  N +S  +P  L   T L+ L +  N       
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI----- 190

Query: 487 SSLRSLRGLS 496
           S LR+L GL 
Sbjct: 191 SDLRALAGLK 200

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.9 bits (117), Expect = 5e-07
 Identities = 41/311 (13%), Positives = 90/311 (28%), Gaps = 21/311 (6%)

Query: 182 SIPSSLGNLSSIIRLSLTYNNI----ARSIPDTLGYLENLSFLSLGGNM---LSGTIPSS 234
           S+ + L    S+  + L+ N I    AR + + +   ++L            +   IP +
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 235 IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPEC 294
           +            L+ ++ +           L  F         L L N+        + 
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 295 ISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLG 354
                    +    N     SI  G  +L N           S  +   +  +QN     
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 355 MSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGT--- 411
              +     +        + +Q     +     +  +L    +L  +  +   LS     
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 412 -IPPQLFGLSSLSI-SLDLSRNHFTGSLPIEV-----GNLKNLGVLDISGNLLSGEIPIS 464
            +      L ++ + +L L  N         +       + +L  L+++GN  S E  + 
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV- 320

Query: 465 LGSCTSLEKLL 475
                 + ++ 
Sbjct: 321 ---VDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 33/311 (10%), Positives = 80/311 (25%), Gaps = 19/311 (6%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFT----HAIPPEIGRLRRLRGLTLNNNS---IGGEIPAT 138
           S+   +     ++ + L  N         +   I   + L     ++     +  EIP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 139 MSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSL 198
           +      +L    ++ +  +      +  +        +     +      L       +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLD 258
                  ++         L  +  G N L                    +  +Q  I  +
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 259 FGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP 318
               L              +L      + G             L  L L++  +      
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 319 GIG------KLVNLRRLYVWNNKLSGTIPSAIGD-----LQNLRMLGMSGNRFSGNIPLS 367
            +       + + L+ L +  N++       +       + +L  L ++GNRFS      
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDV 320

Query: 368 VGNLKMLIQLE 378
           V  ++ +    
Sbjct: 321 VDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 33/321 (10%), Positives = 96/321 (29%), Gaps = 20/321 (6%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGE----IPATMSRCSNIILMDLSV 152
           L+   +   +   ++   +     ++ + L+ N+IG E    +   ++   ++ + + S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 153 NQ---LLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPD 209
                +   IP     L +       ++ +  S  +        +   L+ +     +  
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 210 TLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHF 269
               L   +   +   +    +     N   + +     NR++     ++  T  + +  
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 270 GIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRL 329
             V      +      +                       +    ++   +    NLR L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 330 YVWNNKLSGTIPSAIGD------LQNLRMLGMSGNRFSGNIPLSV-----GNLKMLIQLE 378
            + +  LS    +A+ D         L+ L +  N    +   ++       +  L+ LE
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 379 VSENFLQGTIPSSLCQCKSLI 399
           ++ N         + + + + 
Sbjct: 309 LNGNRF-SEEDDVVDEIREVF 328

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 56/317 (17%), Positives = 80/317 (25%), Gaps = 37/317 (11%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
             L+ S+P    +L S   L  + N++   +P+    L++L   +     LS   P   +
Sbjct: 48  LGLS-SLPELPPHLES---LVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLEY 102

Query: 237 NRSS--------------ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLL 282
              S                    V N     +P               +        L 
Sbjct: 103 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLP 162

Query: 283 NDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKL------ 336
                              L+   +          P +  L  L  +Y  NN L      
Sbjct: 163 FLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL 222

Query: 337 --SGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQ 394
             S    +   +             F          L  L       N     I S    
Sbjct: 223 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 282

Query: 395 CKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISG 454
             SL  +N S N L   +P     L  L      S NH    +P    NLK    L +  
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPRLERL----IASFNHLA-EVPELPQNLK---QLHVEY 333

Query: 455 NLLSGEIPISLGSCTSL 471
           N L  E P    S   L
Sbjct: 334 NPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 9e-07
 Identities = 48/331 (14%), Positives = 90/331 (27%), Gaps = 20/331 (6%)

Query: 97  LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156
              L L+N   + ++P     L  L     + NS+  E+P       ++++ + ++  L 
Sbjct: 40  AHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 157 GNIP--PEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYL 214
              P     G  +   +    + N +      + N S      L  +    +  +     
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 215 ENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFN 274
                       +     S         +   ++        L     LP L       N
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 275 NFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNN 334
               L  L  +     + +        L       +              N      + N
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN----LYYLN 270

Query: 335 KLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQ 394
             S  I S      +L  L +S N+    +P     L+   +L  S N L   +P     
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQN 325

Query: 395 CKSLIGINFSKNNLSGTIPPQLFGLSSLSIS 425
            K L   +   N L    P     +  L ++
Sbjct: 326 LKQL---HVEYNPLR-EFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 68  WNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLN 127
              S      +     +  I         L  L++ NN     +P    RL RL     +
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---AS 312

Query: 128 NNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIK 170
            N +  E+P       N+  + +  N L    P    S+  ++
Sbjct: 313 FNHL-AEVPELP---QNLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 40/325 (12%), Positives = 81/325 (24%), Gaps = 17/325 (5%)

Query: 195 RLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGN 254
            L L    +  S+P+      +L  L    N L+  +P    +   + +  V  N ++  
Sbjct: 42  ELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQS---LKSLLVDNNNLKAL 93

Query: 255 IPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFG 314
             L        + +  +      +                               N    
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 315 SIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML 374
            +P               N+           +        +       N+P         
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFT 434
             L+   +        ++            ++     +   +F   S         N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 435 GSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG 494
             +        +L  L++S N L  E+P        LE+L+   N     +P   ++L+ 
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL-AEVPELPQNLKQ 328

Query: 495 LSVWDFAQNNLSGEIPKFLAGFKLL 519
           L       N L  E P      + L
Sbjct: 329 L---HVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 59/314 (18%), Positives = 90/314 (28%), Gaps = 17/314 (5%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPA-TMSRCSN 144
           S+     +L     L    N+ T  +P     L+ L     N  ++    P       SN
Sbjct: 52  SLPELPPHL---ESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 107

Query: 145 IILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIA 204
             L  L   Q    +            L+   +        + GN        L      
Sbjct: 108 NQLEKLPELQNSSFLKIIDVD---NNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFL 164

Query: 205 RSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP 264
            +I      L+ L  L L    +                  +       N+        P
Sbjct: 165 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP 224

Query: 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLV 324
           +L+   +  N  T+L  L  +     + E I +  + L       N     I        
Sbjct: 225 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 284

Query: 325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL 384
           +L  L V NNKL   +P+       L  L  S N  +  +P    NLK   QL V  N L
Sbjct: 285 SLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLK---QLHVEYNPL 336

Query: 385 QGTIPSSLCQCKSL 398
           +   P      + L
Sbjct: 337 R-EFPDIPESVEDL 349

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 9/179 (5%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSG--TIPSS 234
            N+T ++  +  +L  +  L      I +SI   + YL NL+ ++   N L+    + + 
Sbjct: 28  TNVTDTVSQT--DLDQVTTLQADRLGI-KSIDG-VEYLNNLTQINFSNNQLTDITPLKNL 83

Query: 235 IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPEC 294
                 +   + + +        +             +        L         I + 
Sbjct: 84  TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI 143

Query: 295 ISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRML 353
            +    T       ++     + P +  L  L RL + +NK+S    S +  L NL  L
Sbjct: 144 SALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 19/188 (10%)

Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
                  L    +  ++      L  +  L      +       +  L NL  +  S N+
Sbjct: 18  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ 73

Query: 360 FSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGL 419
            +   PL      + I +  ++      + +        +  N   +         L  L
Sbjct: 74  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133

Query: 420 SSLSISLDLSRNHFTG-------------SLPIEVGNLKNLGVLDISGNLLSGEIPISLG 466
              S ++                      +    + NL  L  LDIS N +S      L 
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 191

Query: 467 SCTSLEKL 474
             T+LE L
Sbjct: 192 KLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 6/188 (3%)

Query: 189 NLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVL 248
            L+  ++  L   N+  ++  +   L+ ++ L      +       +   +++T  +   
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 71

Query: 249 NRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLD 308
           N++    PL     L ++        + T L  L +     L    I++         L+
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 309 N-NKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLS 367
                  +I              +  +    T    + +L  L  L +S N+ S    L+
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLA 191

Query: 368 -VGNLKML 374
            + NL+ L
Sbjct: 192 KLTNLESL 199

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 5/166 (3%)

Query: 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKL 336
           T  LLLNDN  G +  + +      L  L L  N++ G  P       +++ L +  NK+
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 337 SGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCK 396
                     L  L+ L +  N+ S  +P S  +L  L  L +  +             +
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL-ASNPFNCNCHLAWFAE 149

Query: 397 SLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVG 442
            L   + +        P ++  +       DL  + F  S     G
Sbjct: 150 WLRKKSLNGGAARCGAPSKVRDVQ----IKDLPHSEFKCSSENSEG 191

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 425 SLDLSRNHFTG----SLPIEVGNLKNLGVLDISGNLLSGEIPISLGS-----CTSLEKLL 475
            L L+    +     SL   +    +L  LD+S N L     + L          LE+L+
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 476 MQGNKFYGPIPSSLRSLR 493
           +    +   +   L++L 
Sbjct: 433 LYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 324 VNLRRLYVWNNKLSGT-IPSAIGDLQNLRMLGMSGNRFSG----NIPLSVGNLKMLIQLE 378
           ++++ L +   +LS       +  LQ  +++ +     +     +I  ++     L +L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410
           +  N L       + Q          K +L  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 9/91 (9%)

Query: 401 INFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG----SLPIEVGNLKNLGVLDISGNL 456
           ++     LS     +L  L      + L     T      +   +     L  L++  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 457 LSGEIPISLGS-----CTSLEKLLMQGNKFY 482
           L       +          ++KL +Q     
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 7e-05
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 421 SLSI-SLDLSRNHFTGSLPIEV-GNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKL 474
           SL I SLD+     + +   E+   L+   V+ +    L+      I  +L    +L +L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 475 LMQGNKFYGPIPSSL 489
            ++ N+        +
Sbjct: 61  NLRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 7e-05
 Identities = 9/82 (10%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 97  LRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGE----IPATMSRCSNIILMDLS 151
           ++ L +     + A   E+   L++ + + L++  +       I + +     +  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 152 VNQLLGNIPPEFGSLSKIKDLR 173
            N+L            +    +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCK 85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 9/113 (7%)

Query: 67  SWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFT----HAIPPEIGRLRRLR 122
              E        E   +           S LR L L + + +     ++   +     LR
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400

Query: 123 GLTLNNNSIGGEIPATMSR-----CSNIILMDLSVNQLLGNIPPEFGSLSKIK 170
            L L+NN +G      +          +  + L        +     +L K K
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 293 ECISNFSTTLASLFLDNNKI----FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGD-- 346
           + +    + L  L+L +  +      S+   +    +LR L + NN L       + +  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 347 ---LQNLRMLGMSGNRFSGNIPLSVGNLK 372
                 L  L +    +S  +   +  L+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 443 NLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLMQGNKFYGPIPSSL-RSLR---- 493
               L VL ++   +S      +  +L +  SL +L +  N         L  S+R    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 494 GLSVWDFAQNNLSGEIPKFLAGFK 517
            L          S E+   L   +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 327 RRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQG 386
           R L++ +  L  T+   +  L  +  L +S NR     P ++  L+ L  L+ S+N L+ 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE- 56

Query: 387 TIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG 435
                +     L  +    N L  +   Q        + L+L  N    
Sbjct: 57  -NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 351 RMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410
           R+L ++    +  +   +  L ++  L++S N L+   P+ L   + L  +  S N L  
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 411 TIPPQLFGLSSLSISLDLSRNHFTG-SLPIEVGNLKNLGVLDISGNLLSGEIPIS---LG 466
                          L L  N     +    + +   L +L++ GN L  E  I      
Sbjct: 58  VDGVANL---PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 467 SCTSLEKLL 475
              S+  +L
Sbjct: 115 MLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPI 485
           L L+    T      +  L  +  LD+S N L    P +L +   LE  ++Q +      
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALEN 57

Query: 486 PSSLRSLRGLSVWDFAQNNL-SGEIPKFLAGFKLLENVNLSYNDL 529
              + +L  L       N L      + L     L  +NL  N L
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145
           ++  ++  L  +  L L +N     +PP +  LR L    L  +    E    ++    +
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLE--VLQASDNALENVDGVANLPRL 67

Query: 146 ILMDLSVNQLLGNIPPE-FGSLSKIKDLRSFMNNLTG------SIPSSLGNLSSII 194
             + L  N+L  +   +   S  ++  L    N+L         +   L ++SSI+
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 28/132 (21%)

Query: 98  RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG 157
           R LHL + + T  +   + +L  +  L L++N +    PA  +      L  L  +    
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRC---LEVLQASDNAL 55

Query: 158 NIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL 217
                  +L ++++L    N L  S                            L     L
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAA-----------------------IQPLVSCPRL 92

Query: 218 SFLSLGGNMLSG 229
             L+L GN L  
Sbjct: 93  VLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 29/119 (24%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 377 LEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS 436
           L ++   L  T+   L Q   +  ++ S N L    P     L++L     L  +     
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56

Query: 437 LPIEVGNLKNLGVLDISGNLL-SGEIPISLGSCTSLEKLLMQGNKFYG--PIPSSLRSL 492
               V NL  L  L +  N L        L SC  L  L +QGN       I   L  +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 33/245 (13%), Positives = 72/245 (29%), Gaps = 15/245 (6%)

Query: 98  RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG 157
           R      +  T  IP ++   R    L      +        S   ++  +++S N +L 
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 158 NIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL 217
            I  +  S                       NL  I   +       + +  +   +++L
Sbjct: 68  VIEADVFSNLPKLHEIRIEKA---------NNLLYINPEAFQNLPNLQYLLISNTGIKHL 118

Query: 218 SFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT 277
             +    ++    +             +  +     ++ L          H         
Sbjct: 119 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL 178

Query: 278 ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS 337
           + L L+DNN    +P  + + ++    L +   +I      G+  L  LR    +N K  
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-- 236

Query: 338 GTIPS 342
             +P+
Sbjct: 237 -KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 31/229 (13%), Positives = 55/229 (24%), Gaps = 21/229 (9%)

Query: 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSI- 235
           + +T  IPS L    + I L      +            +L  + +  N +   I + + 
Sbjct: 18  SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 74

Query: 236 --------------FNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLL 281
                          N   I   +         + +             I       L +
Sbjct: 75  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134

Query: 282 LNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIP 341
            ++ N   +        S     L+L+ N I                    NN L     
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 342 SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
                     +L +S  R        + NLK L             +P+
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 6/132 (4%)

Query: 323 LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382
            V  R L +   K+   I +    L     +  S N            L+ L  L V+ N
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNN 73

Query: 383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFT---GSLPI 439
            +             L  +  + N+L                 L + RN  T        
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 440 EVGNLKNLGVLD 451
            +  +  + VLD
Sbjct: 134 VIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 15/137 (10%), Positives = 35/137 (25%), Gaps = 7/137 (5%)

Query: 88  SPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIIL 147
           +    N    R L L        I      L +   +  ++N I             +  
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 148 MDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSI 207
           + ++ N++         +L  + +L    N+L              +       N   + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 208 PD----TLGYLENLSFL 220
                  +  +  +  L
Sbjct: 128 KHYRLYVIYKVPQVRVL 144

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 3/149 (2%)

Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPS-AIGDLQNLRMLGMSGN 358
              + L    +         +    NL  LY+ N +    +    +  L  LR L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 359 RFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFG 418
                 P +      L +L +S N L+ ++     Q  SL  +  S N L  +   +   
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 419 LSSLSISLDLSRNHFTGSLPIEVGNLKNL 447
                    +            + ++ N 
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 3/135 (2%)

Query: 86  SISPYIGNLSFLRRLHLDNNNFTHAIPPEI-GRLRRLRGLTLNNNSIGGEIPATMSRCSN 144
               ++     L  L+++N      +       L  LR LT+  + +    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 145 IILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSI-PSSLGNLSSIIRLSLTYNNI 203
           +  ++LS N L  ++  +      +++L    N L  S     L          +    +
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

Query: 204 ARSIPDTLGYLENLS 218
                  L ++ N S
Sbjct: 141 QCHGQGPLAHMPNAS 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	581
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.09

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.4e-38  Score=316.13  Aligned_cols=294  Identities=26%  Similarity=0.427  Sum_probs=200.5

Q ss_pred             CCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc--ccCCCCcccccCccccCCCCCcEEECCCCCCCC--CCchhccC
Q 035922           42 GNETDREALLEFKSKITVDPFGVLGSWNESSHFCK--WHESLKLAGSISPYIGNLSFLRRLHLDNNNFTH--AIPPEIGR  117 (581)
Q Consensus        42 ~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c~--w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~  117 (581)
                      |.++|++||++||+++. +| ..+.+|..++|||.  |.|..+      ..-..-.++++|+|+++.+++  .+|+.+++
T Consensus         3 c~~~e~~aLl~~k~~~~-~~-~~l~sW~~~~d~C~~~w~gv~C------~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~   74 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLG-NP-TTLSSWLPTTDCCNRTWLGVLC------DTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN   74 (313)
T ss_dssp             SCHHHHHHHHHHHHHTT-CC-GGGTTCCTTSCTTTTCSTTEEE------CCSSSCCCEEEEEEECCCCSSCEECCGGGGG
T ss_pred             CCHHHHHHHHHHHHHCC-CC-CcCCCCCCCCCCCCCcCCCeEE------eCCCCcEEEEEEECCCCCCCCCCCCChHHhc
Confidence            78999999999999996 55 37899998899994  997432      112233578999999999987  47899999


Q ss_pred             CCCCCEEEccC-CCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEE
Q 035922          118 LRRLRGLTLNN-NSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRL  196 (581)
Q Consensus       118 l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  196 (581)
                      +++|++|+|++ |+++|.+|.+|+++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+++++.|+++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            99999999986 78998999999999999999999999998888888889999999999998888888888888888888


Q ss_pred             EccCCCCCCcCCCccCCCCcc-cccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccC
Q 035922          197 SLTYNNIARSIPDTLGYLENL-SFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN  275 (581)
Q Consensus       197 ~l~~n~l~~~~p~~l~~l~~L-~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  275 (581)
                      ++++|.+++.+|+.+..+..+ +.+++++|++++..|..+..+                                     
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-------------------------------------  197 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------------------------------  197 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-------------------------------------
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccc-------------------------------------
Confidence            888888887777777666554 556666666554444433222                                     


Q ss_pred             cceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEec
Q 035922          276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM  355 (581)
Q Consensus       276 ~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  355 (581)
                                               ....++++++...+.+|..+..+++++.+++++|.+.+.++ .+..+++|++|++
T Consensus       198 -------------------------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~L  251 (313)
T d1ogqa_         198 -------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL  251 (313)
T ss_dssp             -------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEEC
T ss_pred             -------------------------ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccC
Confidence                                     22334444444444444444444555555555555443332 3444444555555


Q ss_pred             cCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCc
Q 035922          356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN  407 (581)
Q Consensus       356 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~  407 (581)
                      ++|+++|.+|..++++++|++|+|++|+++|.+|. +..+++|+.+++++|+
T Consensus       252 s~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            55554444444444444444444444444444442 2334444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.4e-34  Score=285.37  Aligned_cols=259  Identities=31%  Similarity=0.526  Sum_probs=241.8

Q ss_pred             CCcEEEccCCcccc--cCchhhcCCCCCCEEEeec-CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEE
Q 035922          301 TLASLFLDNNKIFG--SIPPGIGKLVNLRRLYVWN-NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL  377 (581)
Q Consensus       301 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  377 (581)
                      .++.|+|+++.+.+  .+|..++++++|++|+|++ |+++|.+|..++++++|++|++++|++.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            68999999999987  4789999999999999997 89999999999999999999999999999889889999999999


Q ss_pred             eecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcC
Q 035922          378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLL  457 (581)
Q Consensus       378 ~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  457 (581)
                      ++++|.+.+.+|..+..++.++++++++|.+.+.+|..+..+..+.+.+++++|++++..|..+..+..+ .++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            9999999999999999999999999999999999999999998887899999999999999888877554 799999999


Q ss_pred             ccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCc
Q 035922          458 SGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE  537 (581)
Q Consensus       458 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~  537 (581)
                      .+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|+++|.+|+++.++++|++|+|++|+++|. +|+.
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~-iP~~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQG  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-CCCS
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc-CCCc
Confidence            99999999999999999999999997766 588899999999999999999999999999999999999999998 9998


Q ss_pred             cccCCcCcccccCCCCCccCCCCCCCCCC
Q 035922          538 GVIKNSSATSVMGNSKLCGGIPKLQFPRC  566 (581)
Q Consensus       538 ~~~~~l~~l~~~gN~~lcg~~~~~~~~~c  566 (581)
                      +.+++|+.+++.||+.+||.+    .|.|
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~p----lp~c  312 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGSP----LPAC  312 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTT----SSCC
T ss_pred             ccCCCCCHHHhCCCccccCCC----CCCC
Confidence            889999999999999999963    3556

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=1.9e-28  Score=249.58  Aligned_cols=192  Identities=30%  Similarity=0.450  Sum_probs=129.2

Q ss_pred             hhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCC
Q 035922          319 GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSL  398 (581)
Q Consensus       319 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  398 (581)
                      ....+++++.+++++|.+++..|  +..+++|++|++++|.+++ + ..+..+++|+.+++++|.+++..+  +..+++|
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L  265 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKL  265 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccC
Confidence            34556666777777776665433  3455667777777776653 2 245566777777777777665432  5667777


Q ss_pred             cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCC
Q 035922          399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG  478 (581)
Q Consensus       399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  478 (581)
                      ++|++++|++.+ ++ .+..++.+ +.+++++|++++ + ..+..+++++.|++++|++++..  .+..+++|++|++++
T Consensus       266 ~~L~l~~~~l~~-~~-~~~~~~~l-~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~  338 (384)
T d2omza2         266 TELKLGANQISN-IS-PLAGLTAL-TNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFAN  338 (384)
T ss_dssp             SEEECCSSCCCC-CG-GGTTCTTC-SEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCS
T ss_pred             CEeeccCcccCC-CC-cccccccc-cccccccccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCC
Confidence            777777777763 22 24555666 677777777764 2 24667777888888888887543  367788888888888


Q ss_pred             CcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCC
Q 035922          479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYN  527 (581)
Q Consensus       479 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N  527 (581)
                      |++++ ++ .++++++|+.|++++|++++..|  +.++++|++|++++|
T Consensus       339 n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         339 NKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            88764 44 57778888888888888876554  777888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=3.6e-28  Score=247.48  Aligned_cols=343  Identities=22%  Similarity=0.274  Sum_probs=240.6

Q ss_pred             cCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922           92 GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD  171 (581)
Q Consensus        92 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  171 (581)
                      ..+.+|++|++++++|+..  +.+..+++|++|++++|++++. | .++++++|++|++++|.+.+..  .++++++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--cccccccccc
Confidence            3556789999999988743  4578889999999999988854 3 3888888888888888887542  3778888888


Q ss_pred             EECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccC
Q 035922          172 LRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRM  251 (581)
Q Consensus       172 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  251 (581)
                      |+++++.+++..+  ......+.......|.+....+................     .....+.............+  
T Consensus       115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--  185 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSN--  185 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSS--
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhcccccccccccccc--
Confidence            8888887774332  33445666666666655433221111111111111100     00011111111111111111  


Q ss_pred             cccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEe
Q 035922          252 QGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYV  331 (581)
Q Consensus       252 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  331 (581)
                                                        ..  ........+ ++++.+++++|.+++..|  +..+++|++|++
T Consensus       186 ----------------------------------~~--~~~~~~~~l-~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l  226 (384)
T d2omza2         186 ----------------------------------KV--SDISVLAKL-TNLESLIATNNQISDITP--LGILTNLDELSL  226 (384)
T ss_dssp             ----------------------------------CC--CCCGGGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred             ----------------------------------cc--ccccccccc-cccceeeccCCccCCCCc--ccccCCCCEEEC
Confidence                                              11  112223333 378888999988886544  466788999999


Q ss_pred             ecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccccc
Q 035922          332 WNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGT  411 (581)
Q Consensus       332 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~  411 (581)
                      ++|+++. + ..+..+++|+.+++++|.+++..  .+..+++|++|++++|++++..  .+..++.++.++++.|.+.+ 
T Consensus       227 ~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-  299 (384)
T d2omza2         227 NGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-  299 (384)
T ss_dssp             CSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-
T ss_pred             CCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-
Confidence            9998884 3 35778899999999999988543  3778899999999999988543  37788899999999999874 


Q ss_pred             CCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccC
Q 035922          412 IPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRS  491 (581)
Q Consensus       412 ~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  491 (581)
                       ...+..++.+ +.|++++|++++..  .+..+++|++|++++|++++ ++ .++.+++|++|++++|++++..|  +.+
T Consensus       300 -~~~~~~~~~l-~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         300 -ISPISNLKNL-TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             -CGGGGGCTTC-SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             -ccccchhccc-CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hcc
Confidence             3357778888 89999999999643  37889999999999999984 44 68999999999999999997655  889


Q ss_pred             CCCCCEEECCCC
Q 035922          492 LRGLSVWDFAQN  503 (581)
Q Consensus       492 l~~L~~L~ls~n  503 (581)
                      +++|+.|++++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=7.2e-25  Score=215.66  Aligned_cols=242  Identities=21%  Similarity=0.241  Sum_probs=118.9

Q ss_pred             CCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCC
Q 035922          145 IILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGG  224 (581)
Q Consensus       145 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  224 (581)
                      ++++|.+++.++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            455555555555 3444442  4566666666666533333566666666666666666655555666666666666666


Q ss_pred             ccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcE
Q 035922          225 NMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLAS  304 (581)
Q Consensus       225 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~  304 (581)
                      |+++ .+|....  .                                                             .+..
T Consensus        89 n~l~-~l~~~~~--~-------------------------------------------------------------~l~~  104 (305)
T d1xkua_          89 NQLK-ELPEKMP--K-------------------------------------------------------------TLQE  104 (305)
T ss_dssp             SCCS-BCCSSCC--T-------------------------------------------------------------TCCE
T ss_pred             CccC-cCccchh--h-------------------------------------------------------------hhhh
Confidence            6655 3332211  1                                                             3333


Q ss_pred             EEccCCcccccCchhhcCCCCCCEEEeecCcCc--ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922          305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN  382 (581)
Q Consensus       305 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  382 (581)
                      |++++|.+.+..+..+.....++.++...|...  ...+..+..+++|+++++++|.+. .+|..  .+++|+.|++++|
T Consensus       105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n  181 (305)
T d1xkua_         105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGN  181 (305)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTS
T ss_pred             hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCC
Confidence            444444444333333344444555555444322  222334455555556666555554 22222  2345555555555


Q ss_pred             ccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922          383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS  458 (581)
Q Consensus       383 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  458 (581)
                      ..++..+..+..++.+++|++++|.+.+..+..+..+++| ++|++++|+++ .+|.++..+++|++|+|++|+|+
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L-~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cCCCCChhHhhccccccccccccccccccccccccccccc-eeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            5554444555555555555555555543334444444444 44444444444 33444444444444444444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=5.6e-25  Score=216.43  Aligned_cols=265  Identities=20%  Similarity=0.276  Sum_probs=151.1

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN  177 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  177 (581)
                      +.++-++.+++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus        13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            44555555555 3444442  45666666666666333345666666666666666666555555666666666666666


Q ss_pred             cccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCC--CCCCccccCCCCccEEEcccccCcccC
Q 035922          178 NLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRSSITTFSVVLNRMQGNI  255 (581)
Q Consensus       178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~  255 (581)
                      +++ .+|..+  ...++.|++..|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++..|.+..  
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--  164 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--  164 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--
T ss_pred             ccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc--
Confidence            665 344332  245566666666665444434444444555555444322  1122223333334444333333220  


Q ss_pred             ChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCc
Q 035922          256 PLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK  335 (581)
Q Consensus       256 ~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  335 (581)
                                                         +|..+   .++|++|++++|...+..+..+..++.+++|++++|+
T Consensus       165 -----------------------------------l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~  206 (305)
T d1xkua_         165 -----------------------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS  206 (305)
T ss_dssp             -----------------------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred             -----------------------------------cCccc---CCccCEEECCCCcCCCCChhHhhcccccccccccccc
Confidence                                               11111   1367777777777776666777777777777777777


Q ss_pred             CcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccc------cCCCCCcEEECCCCccc
Q 035922          336 LSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSL------CQCKSLIGINFSKNNLS  409 (581)
Q Consensus       336 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~ls~n~l~  409 (581)
                      +++..+.++.++++|++|++++|+++ .+|..+..+++|++|++++|+++......|      ....+|+.|++++|++.
T Consensus       207 l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            77666677777777777777777776 456677777777777777777764322222      23456666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-25  Score=215.62  Aligned_cols=248  Identities=21%  Similarity=0.236  Sum_probs=171.1

Q ss_pred             EEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec-Cc
Q 035922          304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS-EN  382 (581)
Q Consensus       304 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n  382 (581)
                      .++.++++++ .+|..+.  +++++|+|++|++++..+.+|.++++|++|++++|.+.+..+..+..+..++.+... .+
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4455555555 4454432  456777777777775555567777777777777777776666666667777776654 44


Q ss_pred             ccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccC
Q 035922          383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIP  462 (581)
Q Consensus       383 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  462 (581)
                      .++...+..+.++++|++|++++|.+.+..+..+.....+ +.+++++|++++..+..|..+++|+.|++++|++++..+
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhccc-chhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            5555556667777777777777777765555556666666 677788777776556667777778888888888876667


Q ss_pred             ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCC
Q 035922          463 ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKN  542 (581)
Q Consensus       463 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~  542 (581)
                      ..|..+++|+.+++++|++++..|..|..+++|+.||+++|.+.+..|..+..+++|++|++++|++... .+.......
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~-C~~~~l~~~  249 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAW  249 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS-GGGHHHHHH
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC-ccchHHHHH
Confidence            7777788888888888888777777788888888888888888777777777888888888888887765 443322233


Q ss_pred             cCcccccCCCCCcc
Q 035922          543 SSATSVMGNSKLCG  556 (581)
Q Consensus       543 l~~l~~~gN~~lcg  556 (581)
                      ++......+...|.
T Consensus       250 l~~~~~~~~~~~C~  263 (284)
T d1ozna_         250 LQKFRGSSSEVPCS  263 (284)
T ss_dssp             HHHCCSEECCCBEE
T ss_pred             HHhCcCCCCceEeC
Confidence            44445555555563

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=208.68  Aligned_cols=258  Identities=19%  Similarity=0.194  Sum_probs=210.7

Q ss_pred             cCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEecc-CCcccccCCccC
Q 035922          290 LIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS-GNRFSGNIPLSV  368 (581)
Q Consensus       290 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls-~n~l~~~~~~~~  368 (581)
                      .+|..+.   +++++|+|++|.+++..+..+.++++|++|++++|++.+..+..+..+..++.++.. .+.+....+..|
T Consensus        25 ~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  101 (284)
T d1ozna_          25 AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (284)
T ss_dssp             SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            4455443   488999999999997766789999999999999999998888888889999998875 556766667889


Q ss_pred             CCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCC
Q 035922          369 GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLG  448 (581)
Q Consensus       369 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~  448 (581)
                      .++++|++|++++|.+....+..+..+.+|+.+++++|++++..+..+..++.+ +.|++++|++++..+..|.++++|+
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch-hhcccccCcccccchhhhccccccc
Confidence            999999999999999987777788889999999999999995556667788888 8999999999988888899999999


Q ss_pred             eeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCC
Q 035922          449 VLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYND  528 (581)
Q Consensus       449 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~  528 (581)
                      ++++++|++++..|..|..+++|++|++++|++.+..+..|+.+++|+.|++++|.+...-+.. .-...++.+....++
T Consensus       181 ~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~  259 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSE  259 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECC
T ss_pred             hhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCc
Confidence            9999999999988999999999999999999999988899999999999999999987543321 111234455666777


Q ss_pred             CCCCCCCCccccCCcCcccccCCCCCcc
Q 035922          529 LGARYVPTEGVIKNSSATSVMGNSKLCG  556 (581)
Q Consensus       529 l~~~~ip~~~~~~~l~~l~~~gN~~lcg  556 (581)
                      +... .|.  .+......+++.+. +||
T Consensus       260 ~~C~-~p~--~l~g~~l~~l~~~~-l~g  283 (284)
T d1ozna_         260 VPCS-LPQ--RLAGRDLKRLAAND-LQG  283 (284)
T ss_dssp             CBEE-ESG--GGTTCBGGGSCGGG-SCC
T ss_pred             eEeC-Cch--HHcCCccccCCHHH-CCC
Confidence            7665 553  23334444455553 444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-23  Score=198.53  Aligned_cols=202  Identities=24%  Similarity=0.202  Sum_probs=138.3

Q ss_pred             CCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEE
Q 035922          322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGI  401 (581)
Q Consensus       322 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  401 (581)
                      ....+.+++.++++++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|+++. +| .+..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            3455666777777777 4565543  467778888887776555667777777777777777763 33 34567777777


Q ss_pred             ECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcC
Q 035922          402 NFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF  481 (581)
Q Consensus       402 ~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  481 (581)
                      ++++|++. ..+..+..++.+ +.|++++|.+.+..+..+..+.++++|++++|.++...+..+..++.|+.|++++|++
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccc-cccccccccccc-ccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            77777776 455566667777 6777777777665566666677777777777777655555566677777777777777


Q ss_pred             cccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922          482 YGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       482 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      ++..++.|..+++|+.|||++|+|+ .+|+.+..+++|+.|+|++|++..
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            7666666677777777777777776 566666667777777777776653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=194.48  Aligned_cols=198  Identities=22%  Similarity=0.215  Sum_probs=169.8

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      .+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|..+++|++|++++|.++. ++ .++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence            6777899999988 4676553  579999999999997667789999999999999999984 43 35788999999999


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|++++ .+..+..+++|++|++++|.+.+..+..+..+..+ ..|++++|.++...+..+..++.++.|++++|++++.
T Consensus        86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccc-cccccccccccccccccccccceeecccccccccc-ccccccccccceeccccccccccchhccccccccccc
Confidence            999884 46678889999999999999986667777788888 8999999999976677778899999999999999977


Q ss_pred             cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS  506 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  506 (581)
                      .+..|..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            7788899999999999999998 78888888999999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=1.7e-18  Score=172.78  Aligned_cols=97  Identities=21%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             CCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEEC
Q 035922           95 SFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRS  174 (581)
Q Consensus        95 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  174 (581)
                      .++++|||++++++ .+|+.   .++|++|++++|+|+ .+|+.+   .+|++|++++|.++ .+++.   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            36789999999987 56753   468889999999888 667543   57888888888876 22321   135777777


Q ss_pred             CCCcccccCCccCcCCCCCcEEEccCCCCCC
Q 035922          175 FMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR  205 (581)
Q Consensus       175 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  205 (581)
                      ++|.+. .+|. ++.+++|++|+++++.+..
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             cccccc-cccc-hhhhccceeeccccccccc
Confidence            777776 4453 4667777777777666643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=2.1e-18  Score=172.03  Aligned_cols=314  Identities=24%  Similarity=0.329  Sum_probs=176.2

Q ss_pred             CCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEc
Q 035922          119 RRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSL  198 (581)
Q Consensus       119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  198 (581)
                      .++++|||+++.++ .+|+.   .++|++|++++|+++ .+|+.   +.+|++|++.+|+++ .++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            35777778777776 56643   457777788777777 55644   346777777777766 3332 1  135777777


Q ss_pred             cCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcce
Q 035922          199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTE  278 (581)
Q Consensus       199 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  278 (581)
                      ++|.+.. +|. ++.+++|++|+++++.+. ..+..   ...+..+.+..+.......  +. .++              
T Consensus       106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~-~~~~~---~~~l~~l~~~~~~~~~~~~--l~-~l~--------------  162 (353)
T d1jl5a_         106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEELPE--LQ-NLP--------------  162 (353)
T ss_dssp             CSSCCSS-CCC-CTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCC--CT-TCT--------------
T ss_pred             ccccccc-ccc-hhhhccceeecccccccc-ccccc---cccccchhhcccccccccc--cc-ccc--------------
Confidence            7777753 443 566777777777777766 33332   2344444444333221100  00 011              


Q ss_pred             eEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922          279 LLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN  358 (581)
Q Consensus       279 ~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  358 (581)
                                            .++.+++++|..... +.   .....+.+...++.+. .++ .+..++.|+.+++++|
T Consensus       163 ----------------------~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n  214 (353)
T d1jl5a_         163 ----------------------FLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN  214 (353)
T ss_dssp             ----------------------TCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS
T ss_pred             ----------------------cceeccccccccccc-cc---cccccccccccccccc-ccc-cccccccccccccccc
Confidence                                  444555555444321 11   1122344444444333 222 2345566666666666


Q ss_pred             cccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC
Q 035922          359 RFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP  438 (581)
Q Consensus       359 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p  438 (581)
                      ... .++   ....++..+.+.++.+... +   .....+...++..+.+.+ ++    .++......++..+.+.+. +
T Consensus       215 ~~~-~~~---~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~-l~----~l~~~~~~~~~~~~~~~~~-~  280 (353)
T d1jl5a_         215 LLK-TLP---DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSG-LS----ELPPNLYYLNASSNEIRSL-C  280 (353)
T ss_dssp             CCS-SCC---SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSE-ES----CCCTTCCEEECCSSCCSEE-C
T ss_pred             ccc-ccc---ccccccccccccccccccc-c---cccccccccccccccccc-cc----cccchhcccccccCccccc-c
Confidence            544 222   2234556666666655422 1   123455556665555442 11    1212214566666666532 2


Q ss_pred             ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCC
Q 035922          439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL  518 (581)
Q Consensus       439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  518 (581)
                         ..+++|++|++++|+++ .+|..   +++|+.|+|++|+++ .+|+.   +++|+.|++++|+++ .+|+..   .+
T Consensus       281 ---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~  345 (353)
T d1jl5a_         281 ---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ES  345 (353)
T ss_dssp             ---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TT
T ss_pred             ---ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cc
Confidence               33578888888888888 66643   578888899999887 56643   467888999999887 566532   35


Q ss_pred             CCEEEC
Q 035922          519 LENVNL  524 (581)
Q Consensus       519 L~~L~l  524 (581)
                      |+.|.+
T Consensus       346 L~~L~~  351 (353)
T d1jl5a_         346 VEDLRM  351 (353)
T ss_dssp             CCEEEC
T ss_pred             cCeeEC
Confidence            666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.4e-22  Score=207.44  Aligned_cols=110  Identities=18%  Similarity=0.251  Sum_probs=80.5

Q ss_pred             CCcEEECCCCCCCCCC-chhccCCCCCCEEEccCCCCCC----CCcccCcCCCCCCEEEccCCcCccc----CCcccC-C
Q 035922           96 FLRRLHLDNNNFTHAI-PPEIGRLRRLRGLTLNNNSIGG----EIPATMSRCSNIILMDLSVNQLLGN----IPPEFG-S  165 (581)
Q Consensus        96 ~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~-~  165 (581)
                      +|++||++++++++.. .+.+..++++++|+|++|.++.    .++..+..+++|++|||++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5789999999998632 3446678899999999998873    3445667889999999999988632    223332 2


Q ss_pred             CCCCCEEECCCCccccc----CCccCcCCCCCcEEEccCCCCCC
Q 035922          166 LSKIKDLRSFMNNLTGS----IPSSLGNLSSIIRLSLTYNNIAR  205 (581)
Q Consensus       166 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~  205 (581)
                      ..+|++|++++|+++..    ++..+..+++|++|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            35788888888888743    34567778888888888887753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-21  Score=201.81  Aligned_cols=378  Identities=17%  Similarity=0.151  Sum_probs=193.5

Q ss_pred             CCCEEEccCCCCCCCC-cccCcCCCCCCEEEccCCcCcc----cCCcccCCCCCCCEEECCCCccccc----CCccCc-C
Q 035922          120 RLRGLTLNNNSIGGEI-PATMSRCSNIILMDLSVNQLLG----NIPPEFGSLSKIKDLRSFMNNLTGS----IPSSLG-N  189 (581)
Q Consensus       120 ~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~  189 (581)
                      +|++||+++|++++.. .+.+..++++++|+|++|.++.    .++..+..+++|++|+|++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5889999999998532 3345678899999999998873    3455677889999999999988632    222332 2


Q ss_pred             CCCCcEEEccCCCCCCc----CCCccCCCCcccccccCCccCCCCCCccc----c-CCCCccEEEcccccCcccCChhhh
Q 035922          190 LSSIIRLSLTYNNIARS----IPDTLGYLENLSFLSLGGNMLSGTIPSSI----F-NRSSITTFSVVLNRMQGNIPLDFG  260 (581)
Q Consensus       190 l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~p~~l----~-~l~~L~~L~l~~n~l~~~~~~~~~  260 (581)
                      ..+|++|++++|.++..    ++..+..+++|++|++++|.+...-...+    . ........................
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            35788999998888653    33456677888888888887763211111    1 111222222222211110000000


Q ss_pred             cCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccccc----Cchhh-cCCCCCCEEEeecCc
Q 035922          261 FTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGS----IPPGI-GKLVNLRRLYVWNNK  335 (581)
Q Consensus       261 ~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~p~~l-~~l~~L~~L~L~~n~  335 (581)
                                                      ..+... ..++.++++++.....    ....+ ........+++..+.
T Consensus       163 --------------------------------~~l~~~-~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  209 (460)
T d1z7xw1         163 --------------------------------SVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  209 (460)
T ss_dssp             --------------------------------HHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             --------------------------------cccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence                                            001111 2344444444433211    00001 112234445554444


Q ss_pred             Cccc----ccccccCCCCCCeEeccCCcccc-----cCCccCCCCCCCcEEeecCcccCCC----CcccccCCCCCcEEE
Q 035922          336 LSGT----IPSAIGDLQNLRMLGMSGNRFSG-----NIPLSVGNLKMLIQLEVSENFLQGT----IPSSLCQCKSLIGIN  402 (581)
Q Consensus       336 l~~~----~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~  402 (581)
                      +...    ....+...+.++.+++++|.+..     ...........++.+++++|.+...    ....+...+.++.++
T Consensus       210 ~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~  289 (460)
T d1z7xw1         210 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS  289 (460)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            3311    11222344555555555554432     1112223345556666665554422    112233455566666


Q ss_pred             CCCCcccccCCcch----h-cccCCcceeEcCCCcccccCCc----cccCCCCCCeeeccCCcCccc----cCcccc-CC
Q 035922          403 FSKNNLSGTIPPQL----F-GLSSLSISLDLSRNHFTGSLPI----EVGNLKNLGVLDISGNLLSGE----IPISLG-SC  468 (581)
Q Consensus       403 ls~n~l~~~~p~~~----~-~l~~L~~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~----~p~~l~-~l  468 (581)
                      +++|.+.......+    . ....+ +.+++++|.++.....    .+...++|++|+|++|++++.    ++..+. ..
T Consensus       290 l~~n~i~~~~~~~l~~~l~~~~~~L-~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~  368 (460)
T d1z7xw1         290 LAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG  368 (460)
T ss_dssp             CTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             cccccccccccchhhcccccccccc-ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhccc
Confidence            66666542221111    1 12234 5666666665543222    223345677777777766532    222332 34


Q ss_pred             CCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCccccccchhh----h-cCCCCCEEECcCCCCCC
Q 035922          469 TSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSGEIPKFL----A-GFKLLENVNLSYNDLGA  531 (581)
Q Consensus       469 ~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~p~~l----~-~l~~L~~L~ls~N~l~~  531 (581)
                      +.|++|+|++|.+++.    +++.+..+++|++||+++|+++......+    . ....|+.|++++|.+..
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            5677777777776532    33445556677777777777654333222    1 23357777777766653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2e-18  Score=161.29  Aligned_cols=203  Identities=24%  Similarity=0.309  Sum_probs=120.4

Q ss_pred             EEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCccc
Q 035922          305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL  384 (581)
Q Consensus       305 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  384 (581)
                      ++++.+++++.+  .+..+.+|++|++.+|+++. + ..+..+++|++|++++|.+++..  .+..+++++++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence            344444444332  23445556666666666553 2 23556666666666666655332  255566666666666665


Q ss_pred             CCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCcc
Q 035922          385 QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPIS  464 (581)
Q Consensus       385 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  464 (581)
                      +. ++ .+..+++|++++++++...+.  ..+...+.+ ..+.++++.+....  .+..+++|++|++++|.+.+..  .
T Consensus        98 ~~-i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~  168 (227)
T d1h6ua2          98 KN-VS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNL-QVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--P  168 (227)
T ss_dssp             SC-CG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTC-CEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--G
T ss_pred             cc-cc-ccccccccccccccccccccc--chhccccch-hhhhchhhhhchhh--hhccccccccccccccccccch--h
Confidence            52 22 355666666666666665422  123334444 56666666665322  3556677777777777776322  3


Q ss_pred             ccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcC
Q 035922          465 LGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSY  526 (581)
Q Consensus       465 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~  526 (581)
                      ++++++|++|++++|++.+ ++ .++.+++|+.|++++|++++..|  +.++++|++|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            6677777888887777764 33 36777788888888887775432  67777888877763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.1e-17  Score=156.12  Aligned_cols=185  Identities=20%  Similarity=0.316  Sum_probs=156.1

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +|+.|++.+|.++. ++ .+.++++|++|++++|++++..+  +..+++|+++++++|.++. ++ .+.++++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-cc-cccccccccccccc
Confidence            89999999999985 43 58999999999999999986544  8899999999999999873 33 57889999999999


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|...+..  .+...+.++.+.++++.+...  ..+...+.+ +.|++++|.+++..  .+.++++|++|++++|++++ 
T Consensus       116 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L-~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-  187 (227)
T d1h6ua2         116 STQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNL-QYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-  187 (227)
T ss_dssp             TSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTC-CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred             cccccccc--hhccccchhhhhchhhhhchh--hhhcccccc-ccccccccccccch--hhcccccceecccCCCccCC-
Confidence            99887543  366788999999999988643  346678888 89999999998433  47899999999999999984 


Q ss_pred             cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCC
Q 035922          461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQ  502 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  502 (581)
                      ++ .++++++|++|+|++|++++. + .++++++|+.|++++
T Consensus       188 l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            44 488999999999999999854 4 389999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.2e-18  Score=160.72  Aligned_cols=219  Identities=16%  Similarity=0.105  Sum_probs=135.6

Q ss_pred             cEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccC-CccCCCCCCCcEEeecC
Q 035922          303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI-PLSVGNLKMLIQLEVSE  381 (581)
Q Consensus       303 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~  381 (581)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+...+ +..|.+++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45666666665 4554432  46777777777777444456777777777777777766543 33566677777777654


Q ss_pred             -cccCCCCcccccCCCCCcEEECCCCcccccCCc-chhcccCCcceeEcCCCcccccCCccccCCC-CCCeeeccCCcCc
Q 035922          382 -NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP-QLFGLSSLSISLDLSRNHFTGSLPIEVGNLK-NLGVLDISGNLLS  458 (581)
Q Consensus       382 -n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~  458 (581)
                       |.+....+..+..+++|+++++++|++....+. .+..+..+ ..+..+++.+....+..+..++ .++.|++++|+++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l-~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCE-EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccc-ccccccccccccccccccccccccceeeeccccccc
Confidence             456656666677777777777777777532221 22233444 4555666666644444555443 6777888888877


Q ss_pred             cccCccccCCCCCcEE-ECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcC
Q 035922          459 GEIPISLGSCTSLEKL-LMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSY  526 (581)
Q Consensus       459 ~~~p~~l~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~  526 (581)
                      . ++......++++++ ++++|+++...+..|.++++|+.|++++|+++...+..|.+++.|+++++.+
T Consensus       167 ~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         167 E-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             E-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             c-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            3 44333444555444 4666777644445677788888888888888755455566666666655543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=5.6e-18  Score=153.66  Aligned_cols=175  Identities=17%  Similarity=0.230  Sum_probs=126.7

Q ss_pred             CcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccC-CcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeec
Q 035922          374 LIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTI-PPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI  452 (581)
Q Consensus       374 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  452 (581)
                      .+.++.+++.++ .+|..+  .+++++|+|++|++++.+ +..+..+++| +.|++++|++.+..+..+..+++|++|+|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L-~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceE-eeeeccccccccccccccccccccceeee
Confidence            456788888887 566654  357888888888887544 4455677777 78888888888777778888888888888


Q ss_pred             cCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccch-hhhcCCCCCEEECcCCCCCC
Q 035922          453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       453 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~ls~N~l~~  531 (581)
                      ++|++++..+..|.++++|++|+|++|++++..|+.|..+++|++|+|++|.+....+. ++.  ..++.+.+..|.+..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARC  163 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBB
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEe
Confidence            88888866677788888888888888888877777788888888888888887654322 221  234555667777766


Q ss_pred             CCCCCccccCCcCcccccCCCCCccC
Q 035922          532 RYVPTEGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       532 ~~ip~~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      . .|.  .+..++..++..|...|..
T Consensus       164 ~-~p~--~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         164 G-APS--KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             C-SST--TTTTSBGGGSCTTTCCCCC
T ss_pred             C-CCh--hhcCCEeeecCHhhCcCCC
Confidence            5 553  3566677778888777753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3e-17  Score=150.96  Aligned_cols=179  Identities=23%  Similarity=0.309  Sum_probs=95.2

Q ss_pred             EccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccC
Q 035922          306 FLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ  385 (581)
Q Consensus       306 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  385 (581)
                      .+..+.+++.++.  ..+.+|++|++++|.+++. + .+..+++|++|++++|++++. + .++.+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc
Confidence            3444444443332  2344566666666655532 1 244555566666665555532 1 2344555555555555544


Q ss_pred             CCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccc
Q 035922          386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL  465 (581)
Q Consensus       386 ~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  465 (581)
                      + +| .+..+++|+.|+                         +++|.+. .+ ..+..++.++.+++++|.+++  +..+
T Consensus       104 ~-l~-~l~~l~~L~~L~-------------------------l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~  152 (210)
T d1h6ta2         104 D-LS-SLKDLKKLKSLS-------------------------LEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVL  152 (210)
T ss_dssp             C-GG-GGTTCTTCCEEE-------------------------CTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGG
T ss_pred             c-cc-cccccccccccc-------------------------ccccccc-cc-ccccccccccccccccccccc--cccc
Confidence            2 22 244444444444                         4444443 12 234555666666666666652  2234


Q ss_pred             cCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECc
Q 035922          466 GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLS  525 (581)
Q Consensus       466 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls  525 (581)
                      ..+++|+.+++++|++.+. + .+.++++|+.|++++|+++. +| .+.++++|++|+|+
T Consensus       153 ~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         153 SRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             GGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             ccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            5666677777777766642 2 25667777777777777663 33 36677777777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.4e-17  Score=154.35  Aligned_cols=208  Identities=16%  Similarity=0.064  Sum_probs=152.9

Q ss_pred             cCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccc-cccccCCCCCCeEeccC-CcccccCCcc
Q 035922          290 LIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTI-PSAIGDLQNLRMLGMSG-NRFSGNIPLS  367 (581)
Q Consensus       290 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~-n~l~~~~~~~  367 (581)
                      .+|+.+.   +++++|++++|.++...+..|.++++|++|++++|.+...+ +.+|..+++++++.+.. |.+....+..
T Consensus        22 ~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          22 EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            4555443   38999999999998665667899999999999999887544 45688899999998865 6777777788


Q ss_pred             CCCCCCCcEEeecCcccCCCCcc-cccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCC
Q 035922          368 VGNLKMLIQLEVSENFLQGTIPS-SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKN  446 (581)
Q Consensus       368 ~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~  446 (581)
                      |.++++|+++++++|.+....+. .+..+..+..+...++.+...-+..+..++.....+++++|+++. ++....+..+
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~  177 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQ  177 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCC
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchh
Confidence            89999999999999988754322 233455666667777777744455566665433789999999994 4444445556


Q ss_pred             CCee-eccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECC
Q 035922          447 LGVL-DISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA  501 (581)
Q Consensus       447 L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  501 (581)
                      +.++ ++++|+++...+..|.++++|++|+|++|+++...+..|.+++.|+.+++.
T Consensus       178 l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             hhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            5555 578888884444568999999999999999985555567777777666553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.1e-16  Score=145.92  Aligned_cols=176  Identities=26%  Similarity=0.377  Sum_probs=85.0

Q ss_pred             EccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccC
Q 035922          306 FLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ  385 (581)
Q Consensus       306 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  385 (581)
                      .++.+.+++.++  ...++++++|++++|.++. + +.+..+++|++|++++|++++..+  +.++++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            344444443322  2334556666666665552 2 124445555555555555543221  444555555555554443


Q ss_pred             CCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccc
Q 035922          386 GTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL  465 (581)
Q Consensus       386 ~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l  465 (581)
                      . ++ .+..++.|++|++                         ++|.+...  ..+..+++|+.|++++|++. .++ .+
T Consensus        98 ~-~~-~l~~l~~L~~L~l-------------------------~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l  146 (199)
T d2omxa2          98 D-IT-PLANLTNLTGLTL-------------------------FNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-AL  146 (199)
T ss_dssp             C-CG-GGTTCTTCSEEEC-------------------------CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GG
T ss_pred             c-cc-ccccccccccccc-------------------------cccccccc--cccchhhhhHHhhhhhhhhc-ccc-cc
Confidence            2 11 2344444444444                         44443321  12344555555555555554 222 35


Q ss_pred             cCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEE
Q 035922          466 GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENV  522 (581)
Q Consensus       466 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  522 (581)
                      ..+++|+.|++++|++++. + .++++++|+.|++++|++++ ++ .+.++++|++|
T Consensus       147 ~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            5556666666666665532 2 25566666666666666553 22 35555555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=3.1e-17  Score=148.68  Aligned_cols=155  Identities=19%  Similarity=0.240  Sum_probs=99.2

Q ss_pred             cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccC-CccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECC
Q 035922          399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSL-PIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ  477 (581)
Q Consensus       399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  477 (581)
                      ++++.++++++ .+|..+.  +.+ ++|+|++|+|++.+ +..|.++++|++|++++|.+.+..+..+..+++|++|+|+
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l-~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCC-CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            46667777766 6666543  344 66777777776433 4455667777777777777776666667777777777777


Q ss_pred             CCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922          478 GNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG  557 (581)
Q Consensus       478 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~  557 (581)
                      +|++.+..|+.|.++++|+.|+|++|+|++..|+.|..+++|+++++++|++... .+.......++...+.+|...|+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~-~~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN-CHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS-GGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc-cchHHHhhhhhhhcccCCCeEeCC
Confidence            7777766666677777777777777777766666677777777777777776654 332222233445555666656654


Q ss_pred             C
Q 035922          558 I  558 (581)
Q Consensus       558 ~  558 (581)
                      +
T Consensus       166 p  166 (192)
T d1w8aa_         166 P  166 (192)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.9e-16  Score=145.58  Aligned_cols=161  Identities=25%  Similarity=0.382  Sum_probs=109.1

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +|++|++++|.++.. + .+..+++|++|++++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            899999999999854 3 488999999999999999964 3 36889999999999999984 44 57889999999999


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|.+.. + ..+..++.++++++++|.+++  +..+..++++ +.+++++|++++ ++ .+.++++|++|++++|+++ .
T Consensus       121 ~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L-~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         121 HNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKL-DTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             TSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTC-SEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-B
T ss_pred             cccccc-c-ccccccccccccccccccccc--cccccccccc-cccccccccccc-cc-cccCCCCCCEEECCCCCCC-C
Confidence            998763 2 346777788888887777652  2233444444 455555555542 22 1444444444444444444 2


Q ss_pred             cCccccCCCCCcEEEC
Q 035922          461 IPISLGSCTSLEKLLM  476 (581)
Q Consensus       461 ~p~~l~~l~~L~~L~L  476 (581)
                      ++ .+.++++|+.|+|
T Consensus       193 l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             CG-GGTTCTTCSEEEE
T ss_pred             Ch-hhcCCCCCCEEEc
Confidence            22 2444444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.7e-16  Score=142.26  Aligned_cols=159  Identities=33%  Similarity=0.431  Sum_probs=112.7

Q ss_pred             CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      ++++|++++|.++. + +.++.+++|++|++++|++++..+  +.++++|++|++++|.+.. ++ .+.+++.|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccccc
Confidence            89999999999884 3 358899999999999999986543  8899999999999999874 33 47899999999999


Q ss_pred             CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922          381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE  460 (581)
Q Consensus       381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  460 (581)
                      +|.....  ..+..+++|++|++++|++. .++ .+..++++ +.|++++|++++ ++ .++++++|++|++++|++++ 
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L-~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-  186 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSL-QQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-  186 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTC-SEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccc-cccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-
Confidence            9988754  34677888888888888775 332 35555555 566666666553 22 24555555555555555542 


Q ss_pred             cCccccCCCCCcEE
Q 035922          461 IPISLGSCTSLEKL  474 (581)
Q Consensus       461 ~p~~l~~l~~L~~L  474 (581)
                      ++ .++.+++|++|
T Consensus       187 i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCcC
Confidence            22 24445555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.4e-16  Score=149.45  Aligned_cols=226  Identities=15%  Similarity=0.157  Sum_probs=118.2

Q ss_pred             CcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccc-ccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922          302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGT-IPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS  380 (581)
Q Consensus       302 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  380 (581)
                      +..+.++.......... .....+|++|+++++.+++. +...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            44555554444322222 23345677777777766533 23445667777777777777665555566666777777777


Q ss_pred             Ccc-cCCC-CcccccCCCCCcEEECCCCc-cccc-CCcchhcc-cCCcceeEcCCCc--cccc-CCccccCCCCCCeeec
Q 035922          381 ENF-LQGT-IPSSLCQCKSLIGINFSKNN-LSGT-IPPQLFGL-SSLSISLDLSRNH--FTGS-LPIEVGNLKNLGVLDI  452 (581)
Q Consensus       381 ~n~-l~~~-~p~~l~~l~~L~~L~ls~n~-l~~~-~p~~~~~l-~~L~~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L  452 (581)
                      +|. ++.. +......+++|++|++++|. ++.. +...+... +.+ +.|+++++.  ++.. +.....++++|++|++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhccccccc-chhhhccccccccccccccccccccccccccc
Confidence            653 3321 11223456777777777653 3211 12222222 344 666666542  3221 2222344566666666


Q ss_pred             cCC-cCccccCccccCCCCCcEEECCCC-cCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922          453 SGN-LLSGEIPISLGSCTSLEKLLMQGN-KFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG  530 (581)
Q Consensus       453 s~n-~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  530 (581)
                      ++| .+++.....+..+++|++|++++| .+++.....++++++|+.|++++|--.+.++.....+|+|+   +..++++
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls  259 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFT  259 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSC
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCC
Confidence            664 355555555666666666666664 45544445556666666666666522222333233444443   3455555


Q ss_pred             CC
Q 035922          531 AR  532 (581)
Q Consensus       531 ~~  532 (581)
                      ..
T Consensus       260 ~~  261 (284)
T d2astb2         260 TI  261 (284)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.57  E-value=9.1e-16  Score=152.46  Aligned_cols=231  Identities=16%  Similarity=0.141  Sum_probs=154.7

Q ss_pred             CCcEEEccCCccccc----CchhhcCCCCCCEEEeecCcCccc----------ccccccCCCCCCeEeccCCccccc---
Q 035922          301 TLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNNKLSGT----------IPSAIGDLQNLRMLGMSGNRFSGN---  363 (581)
Q Consensus       301 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----------~~~~l~~l~~L~~L~Ls~n~l~~~---  363 (581)
                      .++.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.++..   
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence            788888888876543    333456678888888887654311          223455678888888888877643   


Q ss_pred             -CCccCCCCCCCcEEeecCcccCCCCc-------------ccccCCCCCcEEECCCCccccc----CCcchhcccCCcce
Q 035922          364 -IPLSVGNLKMLIQLEVSENFLQGTIP-------------SSLCQCKSLIGINFSKNNLSGT----IPPQLFGLSSLSIS  425 (581)
Q Consensus       364 -~~~~~~~l~~L~~L~L~~n~l~~~~p-------------~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~~  425 (581)
                       +...+...++|++|++++|.+.....             ......+.|+.+++++|.+...    +...+.....+ +.
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L-~~  190 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL-HT  190 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC-CE
T ss_pred             chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh-cc
Confidence             22233456788888888887642111             1123466788888888877522    33344566777 78


Q ss_pred             eEcCCCccccc-----CCccccCCCCCCeeeccCCcCccc----cCccccCCCCCcEEECCCCcCcccCcc----cccC-
Q 035922          426 LDLSRNHFTGS-----LPIEVGNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLMQGNKFYGPIPS----SLRS-  491 (581)
Q Consensus       426 L~Ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~-  491 (581)
                      |++++|+++..     +...+..+++|+.|++++|.++..    +...+..++.|++|+|++|.+.+....    .+.. 
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            89999887642     334566788899999999988642    445667888999999999988754322    3332 


Q ss_pred             -CCCCCEEECCCCccccc----cchhhh-cCCCCCEEECcCCCCCCC
Q 035922          492 -LRGLSVWDFAQNNLSGE----IPKFLA-GFKLLENVNLSYNDLGAR  532 (581)
Q Consensus       492 -l~~L~~L~ls~n~l~~~----~p~~l~-~l~~L~~L~ls~N~l~~~  532 (581)
                       .+.|+.||+++|.+...    +...+. +++.|++|++++|++...
T Consensus       271 ~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence             36789999999988653    333343 578899999999988653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.2e-15  Score=145.15  Aligned_cols=244  Identities=14%  Similarity=0.121  Sum_probs=168.7

Q ss_pred             cEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCccccc-CCccCCCCCCCcEEeecC
Q 035922          303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN-IPLSVGNLKMLIQLEVSE  381 (581)
Q Consensus       303 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~  381 (581)
                      +.+|++++.+.......+.. ..+..+.++......... ......+|++|+++++.++.. +...+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            36777776654322222211 235566666655443222 233557899999999988754 344567899999999999


Q ss_pred             cccCCCCcccccCCCCCcEEECCCC-ccccc-CCcchhcccCCcceeEcCCC-ccccc-CCcccc-CCCCCCeeeccCCc
Q 035922          382 NFLQGTIPSSLCQCKSLIGINFSKN-NLSGT-IPPQLFGLSSLSISLDLSRN-HFTGS-LPIEVG-NLKNLGVLDISGNL  456 (581)
Q Consensus       382 n~l~~~~p~~l~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~~L~~~L~Ls~n-~l~~~-~p~~l~-~l~~L~~L~Ls~n~  456 (581)
                      |.+++..+..+..+++|++|++++| .++.. +..-...++.| ++|++++| .++.. +...+. ..++|+.|+++++.
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L-~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC-CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc-cccccccccccccccchhhhcccccccchhhhcccc
Confidence            9998888888999999999999997 45422 22334567888 99999997 44422 222333 34789999999863


Q ss_pred             --Ccc-ccCccccCCCCCcEEECCCCc-CcccCcccccCCCCCCEEECCCC-ccccccchhhhcCCCCCEEECcCCCCCC
Q 035922          457 --LSG-EIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSLRGLSVWDFAQN-NLSGEIPKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       457 --l~~-~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                        ++. .+.....++++|++|++++|. +++.....+..+++|++|++++| .+++.....+..+++|++|+++++ ++.
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d  238 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  238 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCH
Confidence              443 233344678999999999975 77777788999999999999996 677777777899999999999987 332


Q ss_pred             CCCCCccccCCcCcccccCCC
Q 035922          532 RYVPTEGVIKNSSATSVMGNS  552 (581)
Q Consensus       532 ~~ip~~~~~~~l~~l~~~gN~  552 (581)
                      ..++.  ....+..+.+..++
T Consensus       239 ~~l~~--l~~~lp~L~i~~~~  257 (284)
T d2astb2         239 GTLQL--LKEALPHLQINCSH  257 (284)
T ss_dssp             TCHHH--HHHHSTTSEESCCC
T ss_pred             HHHHH--HHHhCccccccCcc
Confidence            21222  12334555565444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=126.01  Aligned_cols=128  Identities=14%  Similarity=0.107  Sum_probs=79.8

Q ss_pred             ccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCC
Q 035922          392 LCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSL  471 (581)
Q Consensus       392 l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  471 (581)
                      +.++.++++|++++|+++ .++..+..++.+ +.|++++|+|+ .++ .+..+++|++|++++|+++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L-~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQF-DAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCC-SEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccC-CEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            445556666666666666 455544556666 66777777666 333 46667777777777777764444445567777


Q ss_pred             cEEECCCCcCcccCc-ccccCCCCCCEEECCCCcccccc---chhhhcCCCCCEEE
Q 035922          472 EKLLMQGNKFYGPIP-SSLRSLRGLSVWDFAQNNLSGEI---PKFLAGFKLLENVN  523 (581)
Q Consensus       472 ~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~---p~~l~~l~~L~~L~  523 (581)
                      +.|++++|++..... ..+..+++|+.|++++|.++...   +..+..+|+|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777777763211 35667777777777777775322   12466677777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.8e-15  Score=128.97  Aligned_cols=127  Identities=15%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922           90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI  169 (581)
Q Consensus        90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  169 (581)
                      .+.+..++++|+|++|+|+. ++..+..+++|++|+|++|.++ .++ .+..+++|++|++++|.++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            34566677778888887774 4555567777788888877777 333 46777777777777777775544445667777


Q ss_pred             CEEECCCCcccccCC--ccCcCCCCCcEEEccCCCCCCcCCC----ccCCCCcccccc
Q 035922          170 KDLRSFMNNLTGSIP--SSLGNLSSIIRLSLTYNNIARSIPD----TLGYLENLSFLS  221 (581)
Q Consensus       170 ~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~  221 (581)
                      ++|++++|+++. ++  ..+..+++|++|++++|.++.. |.    .+..+++|++||
T Consensus        90 ~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~-~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccc-cccccccccccccchhhcCCCccccc-cchHHHHHHHCCCcCeeC
Confidence            777777777763 22  3456666777777777666432 21    244555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=5.6e-14  Score=116.59  Aligned_cols=102  Identities=25%  Similarity=0.255  Sum_probs=61.5

Q ss_pred             eeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCc
Q 035922          425 SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNN  504 (581)
Q Consensus       425 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  504 (581)
                      .|++++|+++ .++ .+.++++|++|++++|+++ .+|..++.+++|+.|++++|++.+ +| .+..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4566666665 333 3566666666666666665 455556666666666666666653 33 35666666666666666


Q ss_pred             ccccc-chhhhcCCCCCEEECcCCCCCC
Q 035922          505 LSGEI-PKFLAGFKLLENVNLSYNDLGA  531 (581)
Q Consensus       505 l~~~~-p~~l~~l~~L~~L~ls~N~l~~  531 (581)
                      +.... ...+..+++|++|++++|++++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            65432 1345666666666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=4e-14  Score=117.52  Aligned_cols=118  Identities=23%  Similarity=0.330  Sum_probs=89.7

Q ss_pred             cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCC
Q 035922          399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG  478 (581)
Q Consensus       399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  478 (581)
                      ++|++++|+++ .++ .+..+..+ ++|++++|+++ .+|..++.+++|++|++++|+++ .+| .+..+++|+.|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L-~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCC-CEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            57888888887 555 47788888 88888888888 67777888888888888888887 444 478888888888888


Q ss_pred             CcCcccC-cccccCCCCCCEEECCCCccccc---cchhhhcCCCCCEE
Q 035922          479 NKFYGPI-PSSLRSLRGLSVWDFAQNNLSGE---IPKFLAGFKLLENV  522 (581)
Q Consensus       479 n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~---~p~~l~~l~~L~~L  522 (581)
                      |++.+.. ...+..+++|+.|++++|.++..   .......+|+|+.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8887443 24678888888888888888642   22334557777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=2.9e-15  Score=148.79  Aligned_cols=237  Identities=16%  Similarity=0.145  Sum_probs=173.4

Q ss_pred             CchhhcCCCCCCEEEeecCcCccc----ccccccCCCCCCeEeccCCccccc----------CCccCCCCCCCcEEeecC
Q 035922          316 IPPGIGKLVNLRRLYVWNNKLSGT----IPSAIGDLQNLRMLGMSGNRFSGN----------IPLSVGNLKMLIQLEVSE  381 (581)
Q Consensus       316 ~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~  381 (581)
                      +...+.....|+.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            445677889999999999988643    334566789999999998754321          122345678999999999


Q ss_pred             cccCCC----CcccccCCCCCcEEECCCCcccccCCcc-------------hhcccCCcceeEcCCCccccc----CCcc
Q 035922          382 NFLQGT----IPSSLCQCKSLIGINFSKNNLSGTIPPQ-------------LFGLSSLSISLDLSRNHFTGS----LPIE  440 (581)
Q Consensus       382 n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~p~~-------------~~~l~~L~~~L~Ls~n~l~~~----~p~~  440 (581)
                      |.+...    +...+..+++|++|++++|.+...-...             ....+.+ +.+++++|+++..    +...
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L-~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC-CEEECCSSCCTGGGHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCccc-ceeecccccccccccccccch
Confidence            998764    3344556889999999999875321111             1234566 7899999988743    3334


Q ss_pred             ccCCCCCCeeeccCCcCccc-----cCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCccccccch
Q 035922          441 VGNLKNLGVLDISGNLLSGE-----IPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSGEIPK  511 (581)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~p~  511 (581)
                      +...+.|++|++++|+++..     +...+..+++|+.|++++|.++..    +...+..+++|+.|++++|.+.+.-..
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            56778999999999998742     345677899999999999998643    445678899999999999999865333


Q ss_pred             ----hhhc--CCCCCEEECcCCCCCCCCCC---Cc--cccCCcCcccccCCCC
Q 035922          512 ----FLAG--FKLLENVNLSYNDLGARYVP---TE--GVIKNSSATSVMGNSK  553 (581)
Q Consensus       512 ----~l~~--l~~L~~L~ls~N~l~~~~ip---~~--~~~~~l~~l~~~gN~~  553 (581)
                          .+..  .+.|++|++++|++......   ..  ...+.|+.+++.||..
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence                3333  36799999999998643111   10  2356799999999985

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-12  Score=110.79  Aligned_cols=105  Identities=21%  Similarity=0.117  Sum_probs=75.8

Q ss_pred             ceeEcCCCcccccCCccccCCCCCCeeeccCC-cCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCC
Q 035922          424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGN-LLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQ  502 (581)
Q Consensus       424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  502 (581)
                      ..++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++...|..|..+++|+.|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            45777777777 56667777778888888665 46655556677788888888888888766677778888888888888


Q ss_pred             CccccccchhhhcCCCCCEEECcCCCCC
Q 035922          503 NNLSGEIPKFLAGFKLLENVNLSYNDLG  530 (581)
Q Consensus       503 n~l~~~~p~~l~~l~~L~~L~ls~N~l~  530 (581)
                      |++....+..+..+ .|++|+|++|++.
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCcccChhhhccc-cccccccCCCccc
Confidence            88875444444443 5778888888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=6.3e-14  Score=126.72  Aligned_cols=127  Identities=24%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             cccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCC
Q 035922          391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTS  470 (581)
Q Consensus       391 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  470 (581)
                      .+..+++|++|++++|+++ .++ .+..+++| +.|++++|+++ .+|.....++.|++|++++|+++. ++ .+..+++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L-~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~  116 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC-CHHHHTTC-CEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHH
T ss_pred             HHhcccccceeECcccCCC-Ccc-cccCCccc-cChhhcccccc-cccccccccccccccccccccccc-cc-ccccccc
Confidence            3444444555555555444 332 24444444 45555555544 333333333445555555555542 22 2445555


Q ss_pred             CcEEECCCCcCcccCc-ccccCCCCCCEEECCCCccccccch----------hhhcCCCCCEEE
Q 035922          471 LEKLLMQGNKFYGPIP-SSLRSLRGLSVWDFAQNNLSGEIPK----------FLAGFKLLENVN  523 (581)
Q Consensus       471 L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~----------~l~~l~~L~~L~  523 (581)
                      |+.|++++|++..... ..+..+++|+.|++++|.+....+.          .+..+|+|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            5555555555543211 2455555666666666655433222          145566666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=6.3e-14  Score=126.70  Aligned_cols=126  Identities=27%  Similarity=0.307  Sum_probs=71.5

Q ss_pred             CCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCC
Q 035922          368 VGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNL  447 (581)
Q Consensus       368 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L  447 (581)
                      +..+++|++|++++|.++. ++ .+..+++|++|++++|+++ .+|.....++.+ +.|++++|+++. ++ .+..+++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L-~~L~l~~N~i~~-l~-~~~~l~~L  117 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-EELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHC-CEEECSEEECCC-HH-HHHHHHHS
T ss_pred             HhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccc-cccccccccccc-cc-cccccccc
Confidence            4444455555555555442 22 2445555555555555554 444444444455 566666666663 32 35566677


Q ss_pred             CeeeccCCcCccccC-ccccCCCCCcEEECCCCcCcccCcc----------cccCCCCCCEEE
Q 035922          448 GVLDISGNLLSGEIP-ISLGSCTSLEKLLMQGNKFYGPIPS----------SLRSLRGLSVWD  499 (581)
Q Consensus       448 ~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~----------~l~~l~~L~~L~  499 (581)
                      +.|++++|+++.... ..+..+++|+.|++++|++....+.          .+..+++|+.||
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777777777663211 3466777777777777776543332          156678888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-11  Score=106.46  Aligned_cols=105  Identities=14%  Similarity=0.076  Sum_probs=74.3

Q ss_pred             cEEECCCCCCCCCCchhccCCCCCCEEEccCC-CCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922           98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNN-SIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM  176 (581)
Q Consensus        98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  176 (581)
                      ..++.+++.+. ..|..+..+++|++|++++| .++...+.+|..+++|++|++++|+++...+..|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            44666766666 45666777778888888655 47755566777788888888888888776677777788888888888


Q ss_pred             CcccccCCccCcCCCCCcEEEccCCCCC
Q 035922          177 NNLTGSIPSSLGNLSSIIRLSLTYNNIA  204 (581)
Q Consensus       177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~  204 (581)
                      |+++ .+|.......+|++|++++|.+.
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCc-ccChhhhccccccccccCCCccc
Confidence            8877 44444444446778888877763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.1e-08  Score=88.39  Aligned_cols=66  Identities=21%  Similarity=0.143  Sum_probs=31.3

Q ss_pred             cCCCCCCeeeccCCcCccc--cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922          442 GNLKNLGVLDISGNLLSGE--IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG  507 (581)
Q Consensus       442 ~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  507 (581)
                      ..+++|++|+|++|+|+..  ++..+..+++|+.|++++|.+....+-.+-....|+.|++++|.+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3455555555555555532  12334445555555555555553222122223345555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.5e-08  Score=85.98  Aligned_cols=82  Identities=27%  Similarity=0.318  Sum_probs=50.2

Q ss_pred             hcccCCcceeEcCCCccccc--CCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcc-------
Q 035922          417 FGLSSLSISLDLSRNHFTGS--LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPS-------  487 (581)
Q Consensus       417 ~~l~~L~~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-------  487 (581)
                      ..++.+ +.|++++|+|+..  ++..+..+++|+.|++++|.++...+-.......|+.|++++|++.....+       
T Consensus        62 ~~~~~L-~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPEL-LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTC-CCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCC-CEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            445666 6677777777642  233456677888888888887743332333445678888888888754332       


Q ss_pred             cccCCCCCCEEE
Q 035922          488 SLRSLRGLSVWD  499 (581)
Q Consensus       488 ~l~~l~~L~~L~  499 (581)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            244566666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.92  E-value=4.6e-06  Score=71.73  Aligned_cols=88  Identities=14%  Similarity=0.130  Sum_probs=48.8

Q ss_pred             ccCCCCCCeeeccCCcCcc----ccCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCcccc-----
Q 035922          441 VGNLKNLGVLDISGNLLSG----EIPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSG-----  507 (581)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~-----  507 (581)
                      +...+.|++|+|++|.+..    .+...+...+.|++|+|++|.+...    +-+.+...+.|+.|++++|.+..     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            3444556666666666542    1222344556666666666666532    22344555667777776665432     


Q ss_pred             --ccchhhhcCCCCCEEECcCCC
Q 035922          508 --EIPKFLAGFKLLENVNLSYND  528 (581)
Q Consensus       508 --~~p~~l~~l~~L~~L~ls~N~  528 (581)
                        .+...+...++|+.|+++++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence              134445556777777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.75  E-value=9.5e-06  Score=69.64  Aligned_cols=87  Identities=14%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             cccCCcceeEcCCCccccc----CCccccCCCCCCeeeccCCcCccc----cCccccCCCCCcEEECCCCcCccc-----
Q 035922          418 GLSSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLMQGNKFYGP-----  484 (581)
Q Consensus       418 ~l~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~-----  484 (581)
                      ..+.+ +.|++++|.+...    +...+...+.|++|+|++|.++..    +...+...++|++|++++|.+...     
T Consensus        42 ~n~~L-~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          42 NSKHI-EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TCSCC-CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hCCcc-ceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            33444 5555555555422    222334456677777777776642    233455667788888877754421     


Q ss_pred             --CcccccCCCCCCEEECCCCcc
Q 035922          485 --IPSSLRSLRGLSVWDFAQNNL  505 (581)
Q Consensus       485 --~p~~l~~l~~L~~L~ls~n~l  505 (581)
                        +.+.+...+.|+.|+++.+..
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhCCCccEeeCcCCCc
Confidence              344555667888888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.40  E-value=4.6e-05  Score=65.15  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             ccCCCCCCeeeccCCcCccc----cCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEEC--CCCcccc---
Q 035922          441 VGNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDF--AQNNLSG---  507 (581)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l--s~n~l~~---  507 (581)
                      +...++|++|++++|.++..    +...+...++++.+++++|.+...    +.+.+...++|+.++|  ++|.+..   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            34455666666666665432    223344556667777776666432    2244555666765444  4455533   


Q ss_pred             -ccchhhhcCCCCCEEECcCCCC
Q 035922          508 -EIPKFLAGFKLLENVNLSYNDL  529 (581)
Q Consensus       508 -~~p~~l~~l~~L~~L~ls~N~l  529 (581)
                       .+...+...+.|+.|++++++.
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCcCEEeCcCCCC
Confidence             3444555667777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.09  E-value=0.00012  Score=62.33  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=49.8

Q ss_pred             cccCCcceeEcCCCccccc----CCccccCCCCCCeeeccCCcCccc----cCccccCCCCCcEEEC--CCCcCcc----
Q 035922          418 GLSSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLM--QGNKFYG----  483 (581)
Q Consensus       418 ~l~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--s~n~l~~----  483 (581)
                      ..+.+ ++|++++|.++..    +...+...++++.+++++|.++..    +...+...++|+.++|  ++|.+..    
T Consensus        44 ~n~~L-~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          44 TNTYV-KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TCCSC-CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             cCCcc-CeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            34444 5555555555432    222334456777777777776532    2345566677776544  4556643    


Q ss_pred             cCcccccCCCCCCEEECCCCcc
Q 035922          484 PIPSSLRSLRGLSVWDFAQNNL  505 (581)
Q Consensus       484 ~~p~~l~~l~~L~~L~ls~n~l  505 (581)
                      .+.+.+...+.|+.|+++.+..
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEeCcCCCC
Confidence            2344566777888888877654