Citrus Sinensis ID: 035950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MKTEKRKVLEQRYSYRSSQEQLPCKVGLSFHSQLPNVEGEGSFKLNPGSCNASGFICSSNFAMPNSVFYAAENCMDFSQDLDNFDLQSSVKVHLQYNQNPSLPKKQPHQDAYRNSPASVFSFMQDPAEEEASLNERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEGKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSNNLEKQYTLFSSVTRLSVSATVS
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEHEHHEEccccccccccccccccEEEcccccccccccccEEcccccccccccEccccccccccccccHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKTEKRKVLEQRYSYrssqeqlpckvglsfhsqlpnvegegsfklnpgscnasgficssnfampnsvFYAAEncmdfsqdldnfdlqsSVKVHLQynqnpslpkkqphqdayrnspasvfsfmqdpaeEEASLnerqkcvsfseyqkhqqtpntmtshsktRIRWTQHLHNRFVECVEflggaekatpkGILKLMDIDGLTIFHVKSHLQKYRtarhipegkskrerttDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQqlkpnkslvdsnnlekQYTLFSSVTRlsvsatvs
Flexible Loop (DISEMBL)
mktekrkvleqrysyrssqeqlpcKVGLSFHSQLPNVEGEGSFKLNPGSCNASGFICSSNFAMPNSVFYAAENCMDFSQDLDNFDLQSSVKVHLQYNQNpslpkkqphqdAYRNSPASVFSFMQDPAEEEASLNERQKCVSfseyqkhqqtpntmtshsKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKyrtarhipegkskrerttdLNAIVrldsesgmQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSNNLEkqytlfssvtrlsvsatvs
Low Complexity Region (SEG)
MKTEKRKVLEQRYSYRSSQEQLPCKVGLSFHSQLPNVEGEGSFKLNPGSCNASGFICSSNFAMPNSVFYAAENCMDFSQDLDNFDLQSSVKVHLQYNQNPSLPKKQPHQDAYRNSPASVFSFMQDPAEEEASLNERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEGKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSNNLEKQYTLFSSVTRLSVSATVS
Disordered region (IsUnstruct)
*************************VGLSF************FKLNPGSCNASGFICSSNFAMPNSVFYAAENCMDFSQDLDNFDLQSSVKVHL*******************************************************************RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTA*****************AIVRL*****MQLVETLKLQLDVQKRLHD***********************************************************
Disordered Region (DISOPRED)
************************KVGL***************************************************************************************************************************************RWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT**********************************************************************************************************
Disordered Region (DISEMBL)
********LEQR*********LPCKVGLSFHSQLPNVEGEGSFKLNPGSCNASGFICSSNFAMPNSVFYAAENCMDFSQDLDNFDLQSSVKVHLQYNQNPS************NSPASVFSFMQDP*********RQKCVSFSE*****************RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEGKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSNNLEKQYTLFSSVTRLSVSATVS
Disordered Region (DISPRO)
**TEKRKVLEQRYSYRSSQEQLPCKVGLSFHSQLPNVEGEGSFKLNPGSCNASGFICSSNFAMPNSVFYAAENCMDFSQDLDNFDLQSSVKV*******************************************************************KTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHI***********************GMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPN*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTEKRKVLEQRYSYRSSQEQLPCKVGLSFHSQLPNVEGEGSFKLNPGSCNASGFICSSNFAMPNSVFYAAENCMDFSQDLDNFDLQSSVKVHLQYNQNPSLPKKQPHQDAYRNSPASVFSFMQDPAEEEASLNERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEGKSKRERTTDLNAIVRLDSESGMQLxxxxxxxxxxxxxxxxxxxxxRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSNNLEKQYTLFSSVTRLSVSATVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.496	0.384	0.484	2e-37
Q9SAK5	358	Myb family transcription	no	no	0.481	0.430	0.409	1e-26
Q0J235	532	Probable transcription fa	no	no	0.171	0.103	0.636	3e-15
Q93WJ9	403	Transcription repressor K	no	no	0.171	0.136	0.636	4e-15
Q9C616	388	Probable transcription fa	no	no	0.171	0.141	0.636	4e-15
Q700D9	255	Putative Myb family trans	no	no	0.190	0.239	0.606	5e-14
Q941I2	322	Probable transcription fa	no	no	0.171	0.170	0.6	6e-14
Q9FJV5	276	Probable transcription fa	no	no	0.187	0.217	0.55	2e-13
O49397	552	Two-component response re	no	no	0.184	0.106	0.516	3e-10
Q9FGT7	635	Two-component response re	no	no	0.193	0.097	0.531	3e-09

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 118/165 (71%), Gaps = 6/165 (3%)

Query: 130 EASLNERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPK 189
           + + N++Q+ VS SE Q   +  ++  + SK R+RWT  LH  FVE V  LGG+E+ATPK
Sbjct: 202 DITANQQQQMVS-SEDQLSGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPK 260

Query: 190 GILKLMDIDGLTIFHVKSHLQKYRTARHIPE-----GKSKRERTTDLNAIVRLDSESGMQ 244
            +LKL++  GLTI+HVKSHLQKYRTAR+ PE     G+ + ++ T +  I  LD ++ ++
Sbjct: 261 AVLKLLNNPGLTIYHVKSHLQKYRTARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVE 320

Query: 245 LVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLK 289
           + + L+LQ++VQKRLH+QLE+QR+LQLQIE+QG+ L  M ++Q K
Sbjct: 321 ITQALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQK 365

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 12/166 (7%)

Query: 126 PAEEEASLNERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFLGGAEK 185
           P+    S   R  CV          +   +T+  K R+RWT  LH RFV+ V  LGG +K
Sbjct: 7   PSSMNGSYENRAMCV-------QGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 59

Query: 186 ATPKGILKLMDIDGLTIFHVKSHLQKYRTAR--HIPEGK-SKRE--RTTDLNAIVRLDSE 240
           ATPK I+++M + GLT++H+KSHLQK+R  +  H   G  S +E  R + ++    + S 
Sbjct: 60  ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASS 119

Query: 241 SGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQ 286
           SGM      ++Q++VQ+RLH+QLEVQR+LQL+IE QGK +  +L++
Sbjct: 120 SGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILER 165

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 42/55 (76%)

Query: 162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTAR 216
           R+RWT  LH RFV  VE LGG E+ATPK +L+LMD+  LT+ HVKSHLQ YRT +
Sbjct: 326 RMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 380

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 42/55 (76%)

Query: 162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTAR 216
           R+RWT  LH RFV  VE LGG E+ATPK +L+LMD+  LT+ HVKSHLQ YRT +
Sbjct: 221 RMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 42/55 (76%)

Query: 162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTAR 216
           R+RWT  LH RFV  VE LGG E+ATPK +L+LMD+  LT+ HVKSHLQ YRT +
Sbjct: 215 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 269

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 43/61 (70%)

Query: 162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEG 221
           R+RWT  LH  FV  V+ LGG  KATPK +LK+MD+ GLTI HVKSHLQ YR +R    G
Sbjct: 25  RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLG 84

Query: 222 K 222
           K
Sbjct: 85  K 85

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 41/55 (74%)

Query: 162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTAR 216
           R+RWT  LH  FV  V+ LGG E+ATPK +L+LMD+  LT+ HVKSHLQ YRT +
Sbjct: 166 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK 220

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEG 221
           R+RWT  LH  FV  V+ LGG E+ATPK +L+LM++  LT+ HVKSHLQ YRT +   +G
Sbjct: 107 RMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKG 166

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 156 TSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTA 215
           T+  K R+ WT  LHN+F+  V+ LG  E+A PK IL LM++D LT  +V SHLQK+R A
Sbjct: 179 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 237

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 160 KTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT-ARHI 218
           K R+ W+Q LH +FV  V+ LG  +KA PK IL LM I+GLT  +V SHLQKYR   + I
Sbjct: 194 KPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLKKI 252

Query: 219 PEGK 222
            EG+
Sbjct: 253 DEGQ 256

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
225441411	377	PREDICTED: uncharacterized protein LOC10	0.934	0.793	0.398	3e-47
224088208	411	predicted protein [Populus trichocarpa]	0.446	0.347	0.652	3e-47
255579001	424	transcription factor, putative [Ricinus	0.446	0.337	0.625	3e-47
297741227	352	unnamed protein product [Vitis vinifera]	0.853	0.775	0.431	1e-46
147864062	378	hypothetical protein VITISV_031368 [Viti	0.934	0.791	0.4	4e-46
297739850	293	unnamed protein product [Vitis vinifera]	0.503	0.549	0.565	4e-46
449457343	400	PREDICTED: uncharacterized protein LOC10	0.425	0.34	0.649	1e-45
225450333	290	PREDICTED: uncharacterized protein LOC10	0.812	0.896	0.437	1e-45
359359031	432	putative Myb-like DNA-binding domain-con	0.443	0.328	0.616	2e-45
359359082	419	putative Myb-like DNA-binding domain-con	0.443	0.338	0.616	2e-45

>gi|225441411|ref|XP_002278675.1| PREDICTED: uncharacterized protein LOC100265807 [Vitis vinifera]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 177/349 (50%), Gaps = 50/349 (14%)

Query: 13  YSYRSSQEQLPCKVGLSFHSQLPNVEGEGSFKLNPGSCNASGFICSSNFAMPNSVFYAAE 72
           +  RSSQ      +G+   SQ P     GS     G    S  I S  F  P S FYA E
Sbjct: 26  FGPRSSQFLGAWNMGIC--SQQPLATDGGSQLQTLGPAKPSSTIMS-RFDSPASAFYATE 82

Query: 73  NCMDFSQ--------------------DLDNFDLQSSVKVHLQYNQNPSLPKKQPHQDAY 112
             M FSQ                     LDNF    SV  +     +P+   +   Q   
Sbjct: 83  RFMGFSQYDHQASNPLLYSQSSTSCDSKLDNF----SVDSNSTPPADPNFQFRNTFQSVM 138

Query: 113 RNS---------PASVFSFMQD----PAEEEASLNERQKCVSFSEYQKHQQTPNTMTS-- 157
           R S         P+  F   QD         + L ++ +C   S        P    S  
Sbjct: 139 RASSENPNTIQCPSIPFDGNQDIRVCSYLYGSPLAQQAQCARSSSSGGVSVAPANPVSPI 198

Query: 158 -HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTAR 216
            HSK RIRWT  LH RFVECV  LGGAEKATPK ILKLMD +GLTIFHVKSHLQKYR A+
Sbjct: 199 LHSKARIRWTPDLHERFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRIAK 258

Query: 217 HIPE-GKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEE 275
           ++PE  + K E+    N +  LD+++GMQ  E L++QLDVQ+RLH+QLE+QRNLQL+IEE
Sbjct: 259 YMPESAEGKSEKRASTNDLPHLDNKTGMQFKEALQMQLDVQRRLHEQLEIQRNLQLRIEE 318

Query: 276 QGKQLTQMLDQQLKPNKSLVDSN------NLEKQYTLFSSVTRLSVSAT 318
           QG+QL  M +QQ + N+S ++++      +LE   T    V  LS   +
Sbjct: 319 QGRQLKMMFEQQQQTNRSFMEADEDLDIMSLEDPSTSLDQVENLSAQGS 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088208|ref|XP_002308371.1| predicted protein [Populus trichocarpa] gi|222854347|gb|EEE91894.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 114/144 (79%), Gaps = 1/144 (0%)

Query: 159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHI 218
           SKTRIRWTQ LH +FVECV  LGGAEKATPK IL LMD DGLTIFHVKSHLQKYR A+++
Sbjct: 235 SKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILNLMDSDGLTIFHVKSHLQKYRIAKYM 294

Query: 219 PE-GKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQG 277
           PE  + K E+   +N + +LD ++G Q+ E L+LQLDVQ+RLH+QLE+QRNLQL+IEEQG
Sbjct: 295 PEPSEGKAEKRNSINDVSQLDIKTGFQIREALQLQLDVQRRLHEQLEIQRNLQLRIEEQG 354

Query: 278 KQLTQMLDQQLKPNKSLVDSNNLE 301
           KQL  M DQQ K   SL++  NL+
Sbjct: 355 KQLKMMFDQQQKTTNSLLNKQNLD 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579001|ref|XP_002530352.1| transcription factor, putative [Ricinus communis] gi|223530099|gb|EEF32013.1| transcription factor, putative [Ricinus communis]

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/144 (62%), Positives = 118/144 (81%), Gaps = 1/144 (0%)

Query: 159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHI 218
           SKTRIRWTQ LH +FVECV  LGGA+KATPK ILKLMD DGLTIFHVKSHLQKYR A+++
Sbjct: 248 SKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRIAKYM 307

Query: 219 PE-GKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQG 277
           P+  + K E+ T +N + ++D ++G+Q+ E L+LQLDVQ+RLH+QLE+Q+NLQL+IEEQG
Sbjct: 308 PDSSEGKAEKRTSINDVSQMDPKTGLQITEALQLQLDVQRRLHEQLEIQKNLQLRIEEQG 367

Query: 278 KQLTQMLDQQLKPNKSLVDSNNLE 301
           +QL +M DQQ + N +L  + NL+
Sbjct: 368 RQLKRMFDQQQRTNNNLFRNQNLD 391

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741227|emb|CBI32178.3| unnamed protein product [Vitis vinifera]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/308 (43%), Positives = 174/308 (56%), Gaps = 35/308 (11%)

Query: 13  YSYRSSQEQLPCKVGLSFH-SQLPNVEGEGSFK--LNPGSCNASGFICSSNFAMPN-SVF 68
           YS +    + P K+G  F   QLP  EG GS +  +N GS   +    + +F  P  S F
Sbjct: 50  YSGKGIFSRQPWKMGFCFQPDQLPASEG-GSTQQIINLGSTPTT---IAGHFGCPAASAF 105

Query: 69  YAAENCMDFSQDLDNFDLQS------SVKVHLQYNQN------PSLPKKQPHQDAYRNSP 116
           YA E  M F  + D++   S      S K     +Q+      PS   +   +  YRNS 
Sbjct: 106 YATEFYMGFP-ECDSYPADSVTSSYPSSKFDPAGSQSKDTQNLPSCENQNSTRTPYRNSQ 164

Query: 117 ASVFSFMQDPAEEEASL-----NERQKCVSFSEYQKHQQTPN-----TMTSHSKTRIRWT 166
                F++   E+         N+ Q+    S +Q  +Q  N     T  + +KTRIRWT
Sbjct: 165 VCDILFIKSDVEDAQPYRILRENQNQRIEPSSRFQLRRQPANPSHNTTSFASNKTRIRWT 224

Query: 167 QHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEGKSKR- 225
           Q LH RFVE V  LGGAEKATPKGILKLM  +GLTIFHVKSHLQKYR ARH P    +  
Sbjct: 225 QDLHKRFVESVNCLGGAEKATPKGILKLMGSEGLTIFHVKSHLQKYRIARHQPGSTEENS 284

Query: 226 ERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLD 285
           E+ T  + I + D E+G+++ E L+LQL+VQ+ LH+QLE+QRNLQLQIEEQGKQL +MLD
Sbjct: 285 EKRTCADVITKFDPETGLRIAEGLRLQLEVQRHLHEQLEIQRNLQLQIEEQGKQLKKMLD 344

Query: 286 ---QQLKP 290
               Q++P
Sbjct: 345 SNRDQIRP 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864062|emb|CAN83224.1| hypothetical protein VITISV_031368 [Vitis vinifera]

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 140/350 (40%), Positives = 177/350 (50%), Gaps = 51/350 (14%)

Query: 13  YSYRSSQEQLPCKVGLSFHSQLPNVEGEGSFKLNPGSCNASGFICSSNFAMPNSVFYAAE 72
           +  RSSQ      +G+   SQ P     GS     G    S  I S  F  P S FYA E
Sbjct: 26  FGPRSSQFLGAWNMGIC--SQQPLATDGGSQLQTLGPAKPSSTIMS-RFDSPASAFYATE 82

Query: 73  NCMDFSQ--------------------DLDNFDLQSSVKVHLQYNQNPSLPKKQPHQDAY 112
             M FSQ                     LDNF    SV  +     +P+   +   Q   
Sbjct: 83  RFMGFSQYDHQASNPLLYSQSSTSCDSKLDNF----SVDSNSTPPADPNFQFRNTFQSVX 138

Query: 113 RNS---------PASVFSFMQD----PAEEEASLNERQKCVSFSEYQKHQQTPNTMTS-- 157
           R S         P+  F   QD         + L ++ +C   S        P    S  
Sbjct: 139 RASSENPNTIQCPSIPFDGNQDIRVCXYLYGSPLAQQAQCARSSSSGGVSVAPANPVSPX 198

Query: 158 -HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTAR 216
            HSK RIRWT  LH RFVECV  LGGAEKATPK ILKLMD +GLTIFHVKSHLQKYR A+
Sbjct: 199 LHSKARIRWTPDLHERFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRIAK 258

Query: 217 HIPE-GKSKRERTTDLNAIVRLDSE-SGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIE 274
           ++PE  + K E+    N +  LD++ SGMQ  E L++QLDVQ+RLH+QLE+QRNLQL+IE
Sbjct: 259 YMPESAEGKSEKRASTNDLPHLDNKTSGMQFKEALQMQLDVQRRLHEQLEIQRNLQLRIE 318

Query: 275 EQGKQLTQMLDQQLKPNKSLVDSN------NLEKQYTLFSSVTRLSVSAT 318
           EQG+QL  M +QQ + N+S ++++      +LE   T    V  LS   +
Sbjct: 319 EQGRQLKMMFEQQQQTNRSFMEADEDLDIMSLEDPSTSLDQVENLSAQGS 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739850|emb|CBI30032.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 121/168 (72%), Gaps = 7/168 (4%)

Query: 158 HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARH 217
           HSK RIRWT  LH RFVECV  LGGAEKATPK ILKLMD +GLTIFHVKSHLQKYR A++
Sbjct: 116 HSKARIRWTPDLHERFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRIAKY 175

Query: 218 IPE-GKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQ 276
           +PE  + K E+    N +  LD+++GMQ  E L++QLDVQ+RLH+QLE+QRNLQL+IEEQ
Sbjct: 176 MPESAEGKSEKRASTNDLPHLDNKTGMQFKEALQMQLDVQRRLHEQLEIQRNLQLRIEEQ 235

Query: 277 GKQLTQMLDQQLKPNKSLVDSN------NLEKQYTLFSSVTRLSVSAT 318
           G+QL  M +QQ + N+S ++++      +LE   T    V  LS   +
Sbjct: 236 GRQLKMMFEQQQQTNRSFMEADEDLDIMSLEDPSTSLDQVENLSAQGS 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457343|ref|XP_004146408.1| PREDICTED: uncharacterized protein LOC101221638 [Cucumis sativus] gi|449480907|ref|XP_004156027.1| PREDICTED: uncharacterized protein LOC101229353 [Cucumis sativus]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 109/137 (79%), Gaps = 1/137 (0%)

Query: 159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHI 218
           +KTRIRWTQ LH +FV+CV  LGGAEKATPK ILKLMD +GLTIFHVKSHLQKYR A+++
Sbjct: 215 TKTRIRWTQDLHEKFVDCVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRIAKYM 274

Query: 219 PEGKSKR-ERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQG 277
           PE   +R +R   +N +  LD+++ MQ+ + L+LQLDVQ+RLHDQLE+QR LQLQIEEQG
Sbjct: 275 PESAERRCDRRNCMNEVTELDAKTAMQIKDALQLQLDVQRRLHDQLEIQRKLQLQIEEQG 334

Query: 278 KQLTQMLDQQLKPNKSL 294
           KQL  M DQQ + NK  
Sbjct: 335 KQLKMMFDQQQETNKCF 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450333|ref|XP_002268475.1| PREDICTED: uncharacterized protein LOC100242570 [Vitis vinifera]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/295 (43%), Positives = 168/295 (56%), Gaps = 35/295 (11%)

Query: 26  VGLSFH-SQLPNVEGEGSFK--LNPGSCNASGFICSSNFAMPN-SVFYAAENCMDFSQDL 81
           +G  F   QLP  EG GS +  +N GS   +    + +F  P  S FYA E  M F  + 
Sbjct: 1   MGFCFQPDQLPASEG-GSTQQIINLGSTPTT---IAGHFGCPAASAFYATEFYMGFP-EC 55

Query: 82  DNFDLQS------SVKVHLQYNQN------PSLPKKQPHQDAYRNSPASVFSFMQDPAEE 129
           D++   S      S K     +Q+      PS   +   +  YRNS      F++   E+
Sbjct: 56  DSYPADSVTSSYPSSKFDPAGSQSKDTQNLPSCENQNSTRTPYRNSQVCDILFIKSDVED 115

Query: 130 EASL-----NERQKCVSFSEYQKHQQTPN-----TMTSHSKTRIRWTQHLHNRFVECVEF 179
                    N+ Q+    S +Q  +Q  N     T  + +KTRIRWTQ LH RFVE V  
Sbjct: 116 AQPYRILRENQNQRIEPSSRFQLRRQPANPSHNTTSFASNKTRIRWTQDLHKRFVESVNC 175

Query: 180 LGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEGKSKR-ERTTDLNAIVRLD 238
           LGGAEKATPKGILKLM  +GLTIFHVKSHLQKYR ARH P    +  E+ T  + I + D
Sbjct: 176 LGGAEKATPKGILKLMGSEGLTIFHVKSHLQKYRIARHQPGSTEENSEKRTCADVITKFD 235

Query: 239 SESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLD---QQLKP 290
            E+G+++ E L+LQL+VQ+ LH+QLE+QRNLQLQIEEQGKQL +MLD    Q++P
Sbjct: 236 PETGLRIAEGLRLQLEVQRHLHEQLEIQRNLQLQIEEQGKQLKKMLDSNRDQIRP 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359359031|gb|AEV40938.1| putative Myb-like DNA-binding domain-containing protein [Oryza punctata]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 119/146 (81%), Gaps = 4/146 (2%)

Query: 159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHI 218
           SKTRIRWTQ LH RFV+CV  LGGA+KATPKGILKLM+ DGLTI+H+KSHLQKYR A+++
Sbjct: 249 SKTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRIAKYM 308

Query: 219 P---EGKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEE 275
           P   EGK + +R T  N +  LD ++GMQ+ E L++QLDVQ+RLH+QLE+QRNLQL+IEE
Sbjct: 309 PASSEGKQQEKRATG-NDMQNLDPKTGMQITEALRVQLDVQRRLHEQLEIQRNLQLRIEE 367

Query: 276 QGKQLTQMLDQQLKPNKSLVDSNNLE 301
           QGK+L +M + QLK ++S+++   L+
Sbjct: 368 QGKRLQKMFEDQLKASRSVMEPQELD 393

Source: Oryza punctata

Species: Oryza punctata

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359359082|gb|AEV40988.1| putative Myb-like DNA-binding domain-containing protein [Oryza minuta]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 119/146 (81%), Gaps = 4/146 (2%)

Query: 159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHI 218
           SKTRIRWTQ LH RFV+CV  LGGA+KATPKGILKLM+ DGLTI+H+KSHLQKYR A+++
Sbjct: 250 SKTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRIAKYM 309

Query: 219 P---EGKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEE 275
           P   EGK + +R T  N +  LD ++GMQ+ E L++QLDVQ+RLH+QLE+QRNLQL+IEE
Sbjct: 310 PASSEGKQQEKRATG-NDMQNLDPKTGMQITEALRVQLDVQRRLHEQLEIQRNLQLRIEE 368

Query: 276 QGKQLTQMLDQQLKPNKSLVDSNNLE 301
           QGK+L +M + QLK ++S+++   L+
Sbjct: 369 QGKRLQKMFEDQLKASRSVMEPQELD 394

Source: Oryza minuta

Species: Oryza minuta

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.562	0.48	0.524	5.7e-43
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.568	0.440	0.455	1.9e-37
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.421	0.330	0.557	6.3e-37
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.418	0.468	0.55	1e-36
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.621	0.501	0.421	4e-35
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.540	0.391	0.453	5.1e-35
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.512	0.365	0.446	9.8e-32
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.412	0.368	0.459	7.3e-27
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.481	0.655	0.341	3e-21
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.365	0.392	0.411	3.9e-21

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 97/185 (52%), Positives = 126/185 (68%)

Query:   112 YRNSPASVFSFMQDPAEEEASLNERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHN 171
             Y NS  +  +F     + + S        SFS +      PN +   +KTRIRWTQ LH 
Sbjct:   148 YSNSNVTHLNFTSSQHQPKQSHPRFSSPPSFSIHGG-SMAPNCV---NKTRIRWTQDLHE 203

Query:   172 RFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPEGKS-KRERTTD 230
             +FVECV  LGGA+KATPK ILK MD DGLTIFHVKSHLQKYR A+++PE +  K E+   
Sbjct:   204 KFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMPESQEGKFEKRAC 263

Query:   231 LNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKP 290
                + +LD+ +G+Q+ E L+LQLDVQ+ LH+QLE+QRNLQL+IEEQGKQL  M++QQ K 
Sbjct:   264 AKELSQLDTRTGVQIKEALQLQLDVQRHLHEQLEIQRNLQLRIEEQGKQLKMMMEQQQKN 323

Query:   291 NKSLV 295
              +SL+
Sbjct:   324 KESLL 328

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 88/193 (45%), Positives = 130/193 (67%)

Query:   110 DAYRNSPASVFS--FMQDPAEEEASLNERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQ 167
             D+  ++P S     F+  P   + + N++Q+ VS SE Q   +  ++  + SK R+RWT 
Sbjct:   181 DSSSHNPNSEIPTPFLDVP-RLDITANQQQQMVS-SEDQLSGRNSSSSVATSKQRMRWTP 238

Query:   168 HLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPE-----GK 222
              LH  FVE V  LGG+E+ATPK +LKL++  GLTI+HVKSHLQKYRTAR+ PE     G+
Sbjct:   239 ELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKPETSEVTGE 298

Query:   223 SKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQ 282
              + ++ T +  I  LD ++ +++ + L+LQ++VQKRLH+QLE+QR+LQLQIE+QG+ L  
Sbjct:   299 PQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQM 358

Query:   283 MLDQQLK--PNKS 293
             M ++Q K   NKS
Sbjct:   359 MFEKQQKIQDNKS 371

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 77/138 (55%), Positives = 100/138 (72%)

Query:   153 NTMTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY 212
             N+     K R+RWT  LH  FVE V  LGG+E+ATPKG+LK+M ++GLTI+HVKSHLQKY
Sbjct:   218 NSNNGTGKARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKY 277

Query:   213 RTARHIPEGK---SKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNL 269
             RTAR+ PE     S   + T L  I  LD + G+ + E L+LQ++VQK+LH+QLE+QRNL
Sbjct:   278 RTARYRPEPSETGSPERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEIQRNL 337

Query:   270 QLQIEEQGKQLTQMLDQQ 287
             QL+IEEQGK L  M ++Q
Sbjct:   338 QLRIEEQGKYLQMMFEKQ 355

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 77/140 (55%), Positives = 106/140 (75%)

Query:   152 PNTMTSH-SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQ 210
             PN+  SH SK R+RWT  LH RFV+ V  LGG ++ATPKG+L++M + GLTI+HVKSHLQ
Sbjct:     8 PNS--SHASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ 65

Query:   211 KYRTARHIPEGKSKRERTTDLNA---IVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQR 267
             KYR A+++P+  S+ ++T    +   +  LD  SGMQ+ E LKLQ++VQKRLH+QLEVQR
Sbjct:    66 KYRLAKYLPDSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEVQR 125

Query:   268 NLQLQIEEQGKQLTQMLDQQ 287
              LQL+IE QGK L +++++Q
Sbjct:   126 QLQLRIEAQGKYLKKIIEEQ 145

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 89/211 (42%), Positives = 126/211 (59%)

Query:    82 DNFDLQSSV--KVHLQYNQNPSLPKKQPHQDAYRNSPASVFSFMQDPAEEEASLNERQKC 139
             D   L SS+   + L  N N +   +QP   +    P +V   +Q P+     L    + 
Sbjct:   157 DEDPLMSSILGDLLLDTNFNSASKVQQPSMQSQIQQPQAV---LQQPSSC-VELRPLDRT 212

Query:   140 VSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDG 199
             VS +    +    N   + +K R+RWT  LH  FV+ V  LGG+ +ATPKG+LK M ++G
Sbjct:   213 VSSNS--NNNSNSNNAAAAAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEG 270

Query:   200 LTIFHVKSHLQKYRTARHIP---EGKSKRERTTDLNAIVRLDSESGMQLVETLKLQLDVQ 256
             LTIFHVKSHLQKYRTA++IP   EG S   R T L  I   D++ G+ + ETL++Q++ Q
Sbjct:   271 LTIFHVKSHLQKYRTAKYIPVPSEG-SPEARLTPLEQITSDDTKRGIDITETLRIQMEHQ 329

Query:   257 KRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQ 287
             K+LH+QLE  R +QL+IEEQGK L  M+++Q
Sbjct:   330 KKLHEQLESLRTMQLRIEEQGKALLMMIEKQ 360

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 82/181 (45%), Positives = 116/181 (64%)

Query:   125 DPAEEEASL-NERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFLGGA 183
             D A +E    N+ Q   S   +       ++MTS  K R+RWT  LH  FVE +  LGG+
Sbjct:   204 DIARQEIVFRNQHQVDPSMEPFNAKSPPASSMTS--KQRMRWTPELHEAFVEAINQLGGS 261

Query:   184 EKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPE-GKSKRE----RTTDLNAIVRLD 238
             E+ATPK +LKL++  GLT++HVKSHLQKYRTAR+ PE  K   E        +  I  LD
Sbjct:   262 ERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYKPELSKDTEEPLVKNLKTIEDIKSLD 321

Query:   239 SESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSN 298
              ++ +++ E L+LQ+ VQK+LH+QLE+QR+LQLQIEEQG+ L  M+++Q K  ++  DS 
Sbjct:   322 LKTSIEITEALRLQMKVQKQLHEQLEIQRSLQLQIEEQGRYLQMMIEKQQKMQENKKDST 381

Query:   299 N 299
             +
Sbjct:   382 S 382

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 79/177 (44%), Positives = 113/177 (63%)

Query:   133 LNERQKCV----SFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATP 188
             L+  Q CV    S      H  +P +  ++ K+R+RWT  LH  FV+ V  L G EKATP
Sbjct:   212 LSPSQSCVPGAMSVDVVSSHP-SPGS-AANQKSRMRWTPELHESFVKAVIKLEGPEKATP 269

Query:   189 KGILKLMDIDGLTIFHVKSHLQKYRTARHIPEGKS-KRERTTDLNAIVRLDSES------ 241
             K + KLM+++GLTI+HVKSHLQKYR A+++PE K  KR   ++   +    SE+      
Sbjct:   270 KAVKKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKG 329

Query:   242 GMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSN 298
              +QL E L++Q++VQK+LH+QLEVQR LQL+IEE  K L +ML++Q K  + +  S+
Sbjct:   330 AIQLTEALRMQMEVQKQLHEQLEVQRVLQLRIEEHAKYLEKMLEEQRKTGRWISSSS 386

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 63/137 (45%), Positives = 94/137 (68%)

Query:   155 MTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT 214
             +T+  K R+RWT  LH RFV+ V  LGG +KATPK I+++M + GLT++H+KSHLQK+R 
Sbjct:    29 LTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88

Query:   215 AR--HIPEGK-SKRE--RTTDLNAIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNL 269
              +  H   G  S +E  R + ++    + S SGM      ++Q++VQ+RLH+QLEVQR+L
Sbjct:    89 GKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHL 148

Query:   270 QLQIEEQGKQLTQMLDQ 286
             QL+IE QGK +  +L++
Sbjct:   149 QLRIEAQGKYMQSILER 165

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 58/170 (34%), Positives = 98/170 (57%)

Query:   155 MTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT 214
             +T+  K R+RWT  LH RFV+ V  LGG EKATPK I+++M + GLT++H+KSHLQK+R 
Sbjct:    18 LTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77

Query:   215 AR--HIPEGKSKRERTTDLNAIVRLD-------SESGMQLVETL-KLQLDVQKRLHDQLE 264
              +  H    ++      D N    LD       + S + +   + ++Q++VQ+R+ +++ 
Sbjct:    78 GKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNEMQMEVQRRIEEEVV 137

Query:   265 VQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSNNLEKQY-TLFSSVTRL 313
             ++R +  +I  QGK +  ML++  +  ++     +L K Y TLF   T +
Sbjct:   138 IERQVNQRIAAQGKYMESMLEKACETQEA-----SLTKDYSTLFFDRTNI 182

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 56/136 (41%), Positives = 81/136 (59%)

Query:   155 MTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT 214
             +T+  K R+RWT  LH RFV+ V  LGG +KATPK I++ M + GLT++H+KSHLQK+R 
Sbjct:    36 LTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 95

Query:   215 ARHIPEGKSKRERTTDLNAI-------------VRL---DSESGMQLVETLKLQLDVQKR 258
              R    GK   E + D + +             +R+   +   G Q+ E L+ Q++VQ+R
Sbjct:    96 GRQA--GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRR 153

Query:   259 LHDQLEV-QRNLQLQI 273
             LHDQLE  Q   +LQ+
Sbjct:   154 LHDQLEYGQVQRRLQL 169

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025363001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (377 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	4e-20
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	7e-16
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	1e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-04

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 82.1 bits (203), Expect = 4e-20
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 160 KTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT 214
           K R+ WT+ LH+RF++ V+ LGG + ATPK IL+LM +DGLT   V SHLQKYR 
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 70.0 bits (172), Expect = 7e-16
 Identities = 28/48 (58%), Positives = 41/48 (85%)

Query: 242 GMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLK 289
           GMQ+ E L+LQ++VQ+RLH+QLEVQR+LQ++IE QGK L ++L++  K
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQK 48

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 61.7 bits (149), Expect = 1e-10
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 132 SLNERQKCVSFSEYQKHQQTPNTMTSHS----KTRIRWTQHLHNRFVECVEFLGGAEKAT 187
           S ++  +C S  + + +Q +P +  + +    K ++ WT  LH RFV  VE LG  EKA 
Sbjct: 204 SASDSGECSSV-DRKDNQASPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQLG-VEKAF 261

Query: 188 PKGILKLMDIDGLTIFHVKSHLQKYRTAR 216
           P  IL+LM +  LT  ++ SHLQKYR+ R
Sbjct: 262 PSRILELMGVQCLTRHNIASHLQKYRSHR 290

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYR 213
           R  WT       +E V+  G         I K +   G T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHG---NGNWSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.91
PLN03162	526	golden-2 like transcription factor; Provisional	99.9
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.86
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.31
smart00426	68	TEA TEA domain.	91.24
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	90.37

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.91  E-value=1.1e-24  Score=160.49  Aligned_cols=51  Identities=55%  Similarity=0.857  Sum_probs=48.9

Q ss_pred             ccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 035950          242 GMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNK  292 (320)
Q Consensus       242 ~~qi~eaL~~QmEvQkrLhEQLEVQR~LQlRIEaQGKyLq~iLekaq~~~~  292 (320)
                      |++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999999999863

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.90  E-value=3.2e-24  Score=209.51  Aligned_cols=65  Identities=46%  Similarity=0.725  Sum_probs=60.2

Q ss_pred             CCCCCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhccCCCC
Q 035950          155 MTSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPE  220 (320)
Q Consensus       155 ~~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~~~  220 (320)
                      ....+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++...
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~  294 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA  294 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence            345789999999999999999999998 79999999999999999999999999999999987543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.86  E-value=3.1e-22  Score=149.42  Aligned_cols=56  Identities=57%  Similarity=0.897  Sum_probs=54.4

Q ss_pred             CCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhc
Q 035950          160 KTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTA  215 (320)
Q Consensus       160 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~  215 (320)
                      |+|++||+|+|++|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.31  E-value=0.00048  Score=48.60  Aligned_cols=48  Identities=29%  Similarity=0.367  Sum_probs=41.2

Q ss_pred             ceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhh
Q 035950          162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYR  213 (320)
Q Consensus       162 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR  213 (320)
                      |..||+|=+.+|++||.++|. +  .-+.|.+.|+ .|-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992 2  6888999998 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=91.24  E-value=0.21  Score=39.57  Aligned_cols=46  Identities=24%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCcchh-hhhhh--c------------CCCCC--cHHHHHHhhhh
Q 035950          164 RWTQHLHNRFVECVEFLGGAEKATPK-GILKL--M------------DIDGL--TIFHVKSHLQK  211 (320)
Q Consensus       164 rWT~ELH~rFV~AV~qLGG~~kAtPK-~IL~l--M------------~v~gL--T~~hVkSHLQK  211 (320)
                      .|.++|-..|++|+...-  ...+-| .+...  |            ...|.  |..+|.||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998874  333333 22211  1            12444  77899999985

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=90.37  E-value=0.2  Score=37.65  Aligned_cols=39  Identities=36%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 035950          257 KRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVD  296 (320)
Q Consensus       257 krLhEQLEVQR~LQlRIEaQGKyLq~iLekaq~~~~s~~~  296 (320)
                      .-|+.|+||||.|.=.+|.| |-||.-+|.+.+-+.+.++
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~~ile   44 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQSILE   44 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHH
Confidence            56889999999999999998 6688778877776655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	320
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		7e-10

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 156 TSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTA 215
           T+  K R+ WT  LHN+F+  V+ LG  E+A PK IL LM++D LT  +V SHLQK+R A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	3e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 84.6 bits (209), Expect = 3e-21
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 156 TSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTA 215
           T+  K R+ WT  LHN+F+  V+ LG  E+A PK IL LM++D LT  +V SHLQK+R A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 216 RH 217
             
Sbjct: 60  LK 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 9e-07
 Identities = 47/355 (13%), Positives = 99/355 (27%), Gaps = 137/355 (38%)

Query: 37  VEG-EGSFK--LNPGSCNASGFICSSNFAMPNSVFY-------AAENCMDFSQDL----- 81
           ++G  GS K  +    C +    C     M   +F+       + E  ++  Q L     
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQC----KMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 82  DNFDLQSSVKVHLQYNQNP------SLPKKQPHQDAY----------------------- 112
            N+  +S    +++   +        L K +P+++                         
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 113 --RNSPASVFSFMQDPAEEEASLNERQKCVS-------FSEY--QKHQQTPNTMTSHSKT 161
             R     V  F+        SL+     ++         +Y   + Q  P  + + +  
Sbjct: 271 TTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 162 RI------------RWTQHLH------NRFVE-CVEFLGGAEKATPKGILKLMDIDGLTI 202
           R+             W    H         +E  +  L       P    K+ D   L++
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL------EPAEYRKMFD--RLSV 380

Query: 203 F--HVKSHLQKYRTARHIPEGKSKRERTTDLNAIVRL----DSESGMQLVETLKLQLDVQ 256
           F                IP              +  +         M +V  L     V+
Sbjct: 381 FPPSAH-----------IPT-----------ILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 257 KR-------LHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDSNNLEKQY 304
           K+       +         + L+++ + +    +       ++S+VD  N+ K +
Sbjct: 419 KQPKESTISIPS-------IYLELKVKLENEYAL-------HRSIVDHYNIPKTF 459

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 60/280 (21%)

Query: 76  DFSQDLDNFDLQSSVKVHLQYNQ-NPSLPKKQPHQDAYRNSPASVFSFMQDPAEEEASLN 134
            F  + D  D+Q   K  L   + +  +  K       R     +F  +    EE     
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-----LFWTLLSKQEEMVQ-- 80

Query: 135 ERQKCVSFSEYQKHQQTPNTMTSHSKTRIRWTQHLHNRFVECVEFL-GGAEKATPKGILK 193
                  F E +  +     + S  KT  R    +   ++E  + L    +      + +
Sbjct: 81  ------KFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 194 LMDIDGLTIFHVKSHLQKYRTARHIP------EGKS----------KRERTTD-----LN 232
           L     L     +  L + R A+++        GK+          K +   D     LN
Sbjct: 134 LQPYLKL-----RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 233 AIVRLDSESGMQLVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPNK 292
                  E+ +++++ L  Q+D       + +   N++L+I     +L ++L  +   N 
Sbjct: 189 LKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 293 SLV-----DSNNLE------KQYTLFSSVTR-LSVSATVS 320
            LV     ++          K   L    TR   V+  +S
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCK--ILL--TTRFKQVTDFLS 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	89.11
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	88.54
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	88.51
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	88.18
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	83.22

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=9.9e-30  Score=193.42  Aligned_cols=61  Identities=49%  Similarity=0.804  Sum_probs=57.7

Q ss_pred             CCCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhccCC
Q 035950          157 SHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHI  218 (320)
Q Consensus       157 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~  218 (320)
                      +.+|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..++
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            5689999999999999999999999 799999999999999999999999999999997543

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=89.11  E-value=0.32  Score=38.57  Aligned_cols=57  Identities=21%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             CCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhh---c-C-----------C--CCCcHHHHHHhhhhhhhccC
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKL---M-D-----------I--DGLTIFHVKSHLQKYRTARH  217 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~l---M-~-----------v--~gLT~~hVkSHLQKYRl~~~  217 (320)
                      ++..-.|.++|-..|++|+...- + --+-|-+|..   | |           .  +-=|+.+|.||||.-|..+.
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp-~-~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~   76 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYP-P-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS   76 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSC-S-SSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcC-C-CCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence            45667899999999999999875 1 1122333311   1 1           0  33477899999999776543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=88.54  E-value=0.62  Score=35.79  Aligned_cols=48  Identities=13%  Similarity=0.146  Sum_probs=39.0

Q ss_pred             CCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      ...+-.||+|=+.+|++||...|+-.    +.|-+.|  ++=|..+++.|-++|
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W----~~IA~~v--~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDW----NKVSEHV--GSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCH----HHHHHHH--SSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCH----HHHHHHc--CCCCHHHHHHHHHHh
Confidence            34466899999999999999999433    5566665  489999999999987

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.51  E-value=0.84  Score=33.80  Aligned_cols=54  Identities=19%  Similarity=0.186  Sum_probs=40.6

Q ss_pred             CCceecChHHHHHHHHHHHHhCCCCCcch---hhhhhhcCCCCCcHHHHHHhhhhhhhcc
Q 035950          160 KTRIRWTQHLHNRFVECVEFLGGAEKATP---KGILKLMDIDGLTIFHVKSHLQKYRTAR  216 (320)
Q Consensus       160 K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVkSHLQKYRl~~  216 (320)
                      ..+-.||+|=+++|++||..+| .+...|   +.|-+.|  +|=|..+|+.|-++|-...
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            3445799999999999999998 333222   3444454  7899999999999997643

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=88.18  E-value=1.2  Score=32.98  Aligned_cols=52  Identities=27%  Similarity=0.366  Sum_probs=41.1

Q ss_pred             CCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhcc
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTAR  216 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~  216 (320)
                      ...+-.||+|=++.|+++|..+|-    .=+.|-+.  ++|=|-.+|+.|.++|-..+
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            345668999999999999999993    33556555  47999999999999885543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=83.22  E-value=1.6  Score=31.19  Aligned_cols=50  Identities=24%  Similarity=0.239  Sum_probs=38.9

Q ss_pred             CCCceecChHHHHHHHHHHHHhC-CCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhh
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLG-GAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT  214 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl  214 (320)
                      .-.+-.||+|=..++++||..+| +-.    +.|-+.|  +|=|-.+++.|-++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGFGNW----QDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCTTCH----HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCcH----HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            34556799999999999999999 332    4455555  68899999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	320
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	3e-19

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.0 bits (192), Expect = 3e-19
 Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 156 TSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYR 213
           T+  K R+ WT  LHN+F+  V+ LG  E+A PK IL LM++D LT  +V SHLQK+R
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFR 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	90.96
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	86.87

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=3.8e-27  Score=177.16  Aligned_cols=60  Identities=50%  Similarity=0.810  Sum_probs=56.8

Q ss_pred             CCCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhccC
Q 035950          157 SHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARH  217 (320)
Q Consensus       157 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~  217 (320)
                      ..+|+|++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999985 8999999999999999999999999999999754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.099  Score=36.23  Aligned_cols=48  Identities=25%  Similarity=0.370  Sum_probs=38.6

Q ss_pred             ceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhc
Q 035950          162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTA  215 (320)
Q Consensus       162 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~  215 (320)
                      ..+||+|=+..|++||...|.-    =..|-+.|  +|=|..+|++|.++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRR----WTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSC----HHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcch----HHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999943    33455554  588999999999988654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.55  Score=31.00  Aligned_cols=44  Identities=23%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          164 RWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       164 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      .||+|=+.++++||.+.| .  .-=+.|-+.|+  |=|..+++.|-.+|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999998 1  12344555554  66999999998886