Citrus Sinensis ID: 035952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MLGKKMASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHccccccccHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccEEEEEEEHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHcccccccccHHHHHHc
Coil and Loop (DISEMBL)
MLGKKMASFKKLAKKVKVmsggdknqphkqCLLEEYEDmasmattptGFFAVYVGeeqerfvvptgflshpLFKMLLEKSYnefgfeqkdrlvvpcsvSTFQEIVSAVEcsnkrfdfgnLVEELI
Flexible Loop (DISEMBL)
mlgkkmasfkKLAKkvkvmsggdknqphKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSavecsnkrfdfgnlveeli
Low Complexity Region (SEG)
MLGkkmasfkklakkvkvmsGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI
Disordered region (IsUnstruct)
******************************CLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLV****
Disordered Region (DISOPRED)
***********************************************GFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAV**********NLVEELI
Disordered Region (DISEMBL)
MLGKKMASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI
Disordered Region (DISPRO)
MLGKKMASFKKLAKKVKVMSGGDKNQP**************MATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGKKMASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.64	0.869	0.382	3e-10
P33081	82	Auxin-induced protein 15A	no	no	0.528	0.804	0.432	1e-09
P33082	82	Auxin-induced protein X15	no	no	0.552	0.841	0.371	7e-09
P33083	90	Auxin-induced protein 6B	no	no	0.472	0.655	0.45	7e-09
P33080	92	Auxin-induced protein X10	no	no	0.488	0.663	0.354	1e-06
P33079	93	Auxin-induced protein 10A	no	no	0.488	0.655	0.354	3e-06

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 29  KQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQ 88
           ++ L    E  + +   P G+ AVYVGE  +RFV+P   L+ PLF+ LL ++  EFG++ 
Sbjct: 9   RKTLSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDH 68

Query: 89  K-DRLVVPCSVSTFQEIVSAV 108
               L +PCS   FQ I S +
Sbjct: 69  PMGGLTIPCSEDLFQHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 43  ATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSVSTF 101
           A  P G+ AVYVGE+ +RFV+P  +L+ P F+ LL ++  EFG++     L +PCS   F
Sbjct: 15  ADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVF 74

Query: 102 QEIVSAV 108
           Q I S +
Sbjct: 75  QCITSCL 81

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 40  ASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSV 98
           ++    P G+ AVYVGE+ +RFV+P  +++ P F+ LL ++  EFG++     L +PCS 
Sbjct: 12  SNAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSE 71

Query: 99  STFQEIVSAV 108
             FQ I   +
Sbjct: 72  EVFQRITCCL 81

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 48  GFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKD-RLVVPCSVSTFQEIVS 106
           G+ AVYVGE+  RFV+P  +L+ P F+ LL ++  EFG+   +  L +PCS   FQ I S
Sbjct: 28  GYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITS 87

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 46  PTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSVSTFQEI 104
           P G+  VYVG++  RF++P  +L+ P F+ LL ++  EFG++     L +PC    F  +
Sbjct: 26  PKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTV 85

Query: 105 VS 106
            S
Sbjct: 86  TS 87

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 46  PTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSVSTFQEI 104
           P G+ AVYVG++  RF +P  +L+ P F+ LL ++  EFG++     L +PC    F  +
Sbjct: 27  PKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNV 86

Query: 105 VS 106
            +
Sbjct: 87  TA 88

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255578961	129	calmodulin binding protein, putative [Ri	1.0	0.968	0.713	4e-43
225440847	125	PREDICTED: indole-3-acetic acid-induced	1.0	1.0	0.72	1e-42
224091969	124	SAUR family protein [Populus trichocarpa	0.992	1.0	0.68	1e-42
356570857	127	PREDICTED: indole-3-acetic acid-induced	1.0	0.984	0.637	5e-41
356537111	128	PREDICTED: auxin-induced protein 15A-lik	0.992	0.968	0.629	1e-40
147774808	120	hypothetical protein VITISV_014692 [Viti	0.96	1.0	0.708	8e-40
356498750	128	PREDICTED: auxin-induced protein 15A-lik	0.992	0.968	0.622	1e-39
357511119	130	Auxin-induced protein 6B [Medicago trunc	0.992	0.953	0.595	6e-36
356505388	124	PREDICTED: indole-3-acetic acid-induced	0.856	0.862	0.588	3e-32
87240821	140	Auxin responsive SAUR protein [Medicago	0.888	0.792	0.601	1e-31

>gi|255578961|ref|XP_002530333.1| calmodulin binding protein, putative [Ricinus communis] gi|223530137|gb|EEF32049.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 108/129 (83%), Gaps = 4/129 (3%)

Query: 1   MLGKKMASFKKLAKKVKVMSGGDKNQPHKQ-CLLEEYEDMA--SMATTPTGFFAVYVGEE 57
           MLGKKM SFKKLAKKVKV+  G+  +  +Q CLL  YED +  S +TTPTGFFA+YVGEE
Sbjct: 1   MLGKKMVSFKKLAKKVKVIGKGNGCEASQQECLLGGYEDESCLSTSTTPTGFFALYVGEE 60

Query: 58  QERFVVPTGFLSHPLFKMLLEKSYNEF-GFEQKDRLVVPCSVSTFQEIVSAVECSNKRFD 116
           +ERFVVPT FL+HPLFKMLLEKS++E  GFEQK+RLVVPCSVSTFQE+V+A+ C N RFD
Sbjct: 61  RERFVVPTSFLNHPLFKMLLEKSFDELNGFEQKNRLVVPCSVSTFQEVVNAIGCCNGRFD 120

Query: 117 FGNLVEELI 125
           FG+LVEE I
Sbjct: 121 FGDLVEEFI 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440847|ref|XP_002282286.1| PREDICTED: indole-3-acetic acid-induced protein ARG7 [Vitis vinifera] gi|297740132|emb|CBI30314.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 106/125 (84%)

Query: 1   MLGKKMASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQER 60
           MLGKKM S KKL KKVKV+ GGD+   H +CLL +YE+ +   TTPTG FAVYVGEE++R
Sbjct: 1   MLGKKMGSVKKLVKKVKVIGGGDREPSHHECLLRDYEEGSPSGTTPTGSFAVYVGEERQR 60

Query: 61  FVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNL 120
           FVVPT FLSHPLFKMLLEK+YNEFGF+Q++ LVVPCSVSTFQE+V+AVEC N +FDFGNL
Sbjct: 61  FVVPTSFLSHPLFKMLLEKAYNEFGFDQRNGLVVPCSVSTFQEVVNAVECCNGKFDFGNL 120

Query: 121 VEELI 125
           VEE +
Sbjct: 121 VEEFV 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091969|ref|XP_002309421.1| SAUR family protein [Populus trichocarpa] gi|222855397|gb|EEE92944.1| SAUR family protein [Populus trichocarpa]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 103/125 (82%), Gaps = 1/125 (0%)

Query: 1   MLGKKMASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQER 60
           MLGKK+ SFKKLAKKVK +S  +  Q   +CLL ++ +     TTPTGFFA+YVGE++ER
Sbjct: 1   MLGKKIVSFKKLAKKVKDISRNECKQSQHECLLRDH-NFDDGVTTPTGFFAIYVGEDRER 59

Query: 61  FVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNL 120
           FVVPT  LSHPLFKMLLEKSYN FGF+Q++RLVVPC+VSTFQE+++AVEC N RFDFGNL
Sbjct: 60  FVVPTSCLSHPLFKMLLEKSYNVFGFDQRNRLVVPCNVSTFQEVLNAVECCNGRFDFGNL 119

Query: 121 VEELI 125
           VEE +
Sbjct: 120 VEEFL 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570857|ref|XP_003553600.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Glycine max]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 103/127 (81%), Gaps = 2/127 (1%)

Query: 1   MLGKKMASFKKLAKKVKVMSGGDKNQ--PHKQCLLEEYEDMASMATTPTGFFAVYVGEEQ 58
           MLGKKM  FKKLAKKVK + G D +    H +CLL+EYE+  ++ T PTGFFA+YVGEE+
Sbjct: 1   MLGKKMVLFKKLAKKVKGVRGIDPDPYPAHHECLLKEYEEECAINTPPTGFFALYVGEER 60

Query: 59  ERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFG 118
           +R+VVPT +LSHPLFKMLLEK+YNEFGF Q++ LVVPCSVSTFQE+V+A+EC+N +FD G
Sbjct: 61  QRYVVPTRYLSHPLFKMLLEKAYNEFGFSQRNGLVVPCSVSTFQEVVNAIECNNDKFDLG 120

Query: 119 NLVEELI 125
            +  E +
Sbjct: 121 KIFAEFV 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537111|ref|XP_003537074.1| PREDICTED: auxin-induced protein 15A-like [Glycine max]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 105/127 (82%), Gaps = 3/127 (2%)

Query: 1   MLGKKMASFKKLAKKVKVMSGGD-KNQPHKQCLLEEYEDM--ASMATTPTGFFAVYVGEE 57
           MLGKKM S KKLAK+VK + G D  + P+++CLL+ YE+   +  +TTPTGFFA+YVGEE
Sbjct: 1   MLGKKMVSLKKLAKRVKGVGGADHSDPPYQECLLKGYEEGKESPSSTTPTGFFALYVGEE 60

Query: 58  QERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDF 117
           ++R+VVPT +LSHPLFKMLLEK+YNEFGF Q++ LVVPCSVSTFQE+V+A+EC+N +FD 
Sbjct: 61  RQRYVVPTSYLSHPLFKMLLEKAYNEFGFAQRNGLVVPCSVSTFQEVVNAIECNNGKFDL 120

Query: 118 GNLVEEL 124
           G + E+ 
Sbjct: 121 GKIFEDF 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774808|emb|CAN71368.1| hypothetical protein VITISV_014692 [Vitis vinifera]

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 101/120 (84%)

Query: 6   MASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPT 65
           M S KKL KKVKV+ GGD+   H +CLL +YE+ +   TTPTG FAVYVGEE++RFVVPT
Sbjct: 1   MGSVKKLVKKVKVIGGGDREPSHHECLLRDYEEGSPSGTTPTGSFAVYVGEERQRFVVPT 60

Query: 66  GFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI 125
            FLSHPLFKMLLEK+YNEFGF+Q++ LVVPCSVSTFQE+V+AVEC N +FDFGNLVEE +
Sbjct: 61  SFLSHPLFKMLLEKAYNEFGFDQRNGLVVPCSVSTFQEVVNAVECCNGKFDFGNLVEEFV 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498750|ref|XP_003518212.1| PREDICTED: auxin-induced protein 15A-like [Glycine max]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 103/127 (81%), Gaps = 3/127 (2%)

Query: 1   MLGKKMASFKKLAKKVKVMSGGD-KNQPHKQCLLEEYED--MASMATTPTGFFAVYVGEE 57
           MLGKKM S KKLAK+VK + G D  + P+++CLL+ YE+   +  + TPTGFFA+YVGEE
Sbjct: 1   MLGKKMVSLKKLAKRVKGVGGADHSDPPYQECLLKGYEEDKESPSSPTPTGFFALYVGEE 60

Query: 58  QERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDF 117
           ++R+VVPT +LSHPLFKMLLEK+YNEFGF Q++ LVVPCSVSTFQE+V+A+EC+N  FD 
Sbjct: 61  RQRYVVPTSYLSHPLFKMLLEKAYNEFGFAQRNGLVVPCSVSTFQEVVNAIECNNGNFDL 120

Query: 118 GNLVEEL 124
           G + E+ 
Sbjct: 121 GKIFEDF 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511119|ref|XP_003625848.1| Auxin-induced protein 6B [Medicago truncatula] gi|355500863|gb|AES82066.1| Auxin-induced protein 6B [Medicago truncatula]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 101/131 (77%), Gaps = 7/131 (5%)

Query: 1   MLGKKMASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTP------TGFFAVYV 54
           MLGKK+ S KKLAKKVKV+   D +  H + LL+EY++     TT       +G FA+YV
Sbjct: 1   MLGKKIVSIKKLAKKVKVIGRVDSDPAHFK-LLKEYKEEEKNPTTKKVGSKKSGVFALYV 59

Query: 55  GEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKR 114
           G+E++R+VVPT FLSHPLFKMLLEK+YNEFGFEQ++ LVVPCSVS F E+V+A+EC+N +
Sbjct: 60  GDERQRYVVPTQFLSHPLFKMLLEKAYNEFGFEQRNGLVVPCSVSAFHEVVNAIECNNCK 119

Query: 115 FDFGNLVEELI 125
           FD GN+ +ELI
Sbjct: 120 FDMGNIFDELI 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505388|ref|XP_003521473.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Glycine max]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 84/107 (78%)

Query: 19  MSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLE 78
           + G D +    +CLL+EYE+  +  T P GFFAVYVGEE++R+VVPT +LSHPLFKMLLE
Sbjct: 18  VGGIDPDPVRHECLLKEYEEECATNTPPIGFFAVYVGEERQRYVVPTRYLSHPLFKMLLE 77

Query: 79  KSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI 125
           K+Y+EFGF Q++ LV+PCSVSTFQE+V+A+EC+N +FD G    E +
Sbjct: 78  KAYDEFGFSQRNGLVIPCSVSTFQEVVNAIECNNDKFDLGKFFAEFV 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87240821|gb|ABD32679.1| Auxin responsive SAUR protein [Medicago truncatula]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/118 (60%), Positives = 91/118 (77%), Gaps = 7/118 (5%)

Query: 1   MLGKKMASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTP------TGFFAVYV 54
           MLGKK+ S KKLAKKVKV+   D +  H + LL+EY++     TT       +G FA+YV
Sbjct: 1   MLGKKIVSIKKLAKKVKVIGRVDSDPAHFK-LLKEYKEEEKNPTTKKVGSKKSGVFALYV 59

Query: 55  GEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECSN 112
           G+E++R+VVPT FLSHPLFKMLLEK+YNEFGFEQ++ LVVPCSVS F E+V+A+EC+N
Sbjct: 60  GDERQRYVVPTQFLSHPLFKMLLEKAYNEFGFEQRNGLVVPCSVSAFHEVVNAIECNN 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2049490	135	AT2G36210 "AT2G36210" [Arabido	0.84	0.777	0.560	1.9e-26
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.512	0.4	0.515	2.6e-15
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.512	0.336	0.531	5.4e-15
TAIR|locus:2134598	122	AT4G00880 "AT4G00880" [Arabido	0.616	0.631	0.443	3.4e-13
TAIR|locus:2133757	103	AT4G09530 "AT4G09530" [Arabido	0.576	0.699	0.468	4.4e-13
TAIR|locus:2155016	99	AT5G66260 "AT5G66260" [Arabido	0.504	0.636	0.460	9.1e-13
TAIR|locus:2080983	106	AT3G51200 "AT3G51200" [Arabido	0.488	0.575	0.475	1.5e-12
TAIR|locus:4515103510	89	AT4G38825 "AT4G38825" [Arabido	0.568	0.797	0.452	2.4e-12
TAIR|locus:2032915	147	SAUR41 "AT1G16510" [Arabidopsi	0.656	0.557	0.416	3.1e-12
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.584	0.701	0.397	3.9e-12

TAIR|locus:2049490 AT2G36210 "AT2G36210" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 60/107 (56%), Positives = 81/107 (75%)

Query:    21 GGDKNQPHKQCLLEEYEDMASMAT-TPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEK 79
             GG ++  ++  L+ E ++ A MA+ TPTG FAVYVGEE+ + VVPT +L+HPLF+MLL+K
Sbjct:    29 GGSESTYNESLLMNEADEAAMMASKTPTGTFAVYVGEERVKRVVPTSYLNHPLFRMLLDK 88

Query:    80 SYNEF-GFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI 125
             S++EF  FEQK  LVVPCS+S FQ++V+AVE  N  FDFG  VEE +
Sbjct:    89 SHDEFLCFEQKVMLVVPCSLSVFQDVVNAVESCNGNFDFGEFVEEFL 135

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:    46 PTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIV 105
             P G+ AVYVG E  RF++PT FLSH LFK+LLEK+  E+GF+    L +PC V TF+ ++
Sbjct:    80 PKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETFKYLL 139

Query:   106 SAVE 109
               +E
Sbjct:   140 KCIE 143

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 34/64 (53%), Positives = 45/64 (70%)

Query:    46 PTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIV 105
             P G  AVYVG E  RF++PT +LSH LFK+LLEK+  EFGF+Q   L +PC V TF+ ++
Sbjct:    80 PKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYLL 139

Query:   106 SAVE 109
               +E
Sbjct:   140 KCME 143

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2134598 AT4G00880 "AT4G00880" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 35/79 (44%), Positives = 49/79 (62%)

Query:    46 PTGFFAVYVG--EEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQE 103
             P G  AV VG  EEQERFV+P  + +HPLF  LL+++  EFGF QK  + +PC V  F+ 
Sbjct:    29 PKGCLAVKVGQGEEQERFVIPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIPCHVEEFRY 88

Query:   104 IVSAVECSNKRFDFGNLVE 122
             +   ++  N RF   NL++
Sbjct:    89 VQGLIDRENTRFLGTNLLD 107

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2133757 AT4G09530 "AT4G09530" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 37/79 (46%), Positives = 52/79 (65%)

Query:    34 EEYEDMA---SMATTPTGFFAVYVGEEQ--ERFVVPTGFLSHPLFKMLLEKSYNEFGFEQ 88
             EE ED     S + TP G F VYVG ++  ERFV+PT FL  P F+ LL+ +  EFG+ +
Sbjct:    14 EEEEDTGESRSSSRTPRGHFVVYVGTKKKLERFVIPTTFLKSPSFQKLLDNAAEEFGYAE 73

Query:    89 --KDRLVVPCSVSTFQEIV 105
               +D++V+PC VSTF+ +V
Sbjct:    74 AHRDKIVLPCDVSTFRSLV 92

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2155016 AT5G66260 "AT5G66260" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query:    46 PTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIV 105
             P G F VYVG  + R V+P  FL+HP+F+MLL++S  EFGF Q + L +PC    F+ ++
Sbjct:    35 PKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSEEEFGFFQDNGLTIPCDEHFFRALI 94

Query:   106 SAV 108
             S++
Sbjct:    95 SSI 97

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2080983 AT3G51200 "AT3G51200" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query:    48 GFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSA 107
             G+FAVYVG  ++R V+P   L+HP FKM+L+KS  EFGF Q+  L +PC  +TF  ++ +
Sbjct:    43 GYFAVYVGHFRDRHVIPITSLNHPTFKMMLQKSEEEFGFRQESGLTIPCDQNTFLTLLDS 102

Query:   108 V 108
             +
Sbjct:   103 I 103

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:4515103510 AT4G38825 "AT4G38825" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query:    36 YEDMASMATTPTGFFAVYVGEEQ-ERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLV 93
             ++  +  A+TP GF AVYVGE Q +R++VP  +L+ P F+ LL KS  EFGF+     L 
Sbjct:    14 FQGRSMAASTPKGFLAVYVGESQMKRYIVPVSYLNQPSFQALLSKSEQEFGFDHPMGGLT 73

Query:    94 VPCSVSTFQEIVS 106
             +PC V TF  + S
Sbjct:    74 IPCPVDTFITVTS 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032915 SAUR41 "AT1G16510" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 35/84 (41%), Positives = 46/84 (54%)

Query:    44 TTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQE 103
             T P G   VYVGEE ERFVV    ++HP+F  LL +S  E+G+ QK  L +PC V  F+ 
Sbjct:    53 TVPAGHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFER 112

Query:   104 IVSAVECSNKRF--DFGNLVEELI 125
             +V  +         D  NLV  L+
Sbjct:   113 VVETLRLGGFEGSGDLENLVASLL 136

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 29/73 (39%), Positives = 43/73 (58%)

Query:    36 YEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVP 95
             Y++       P G F VYVGE++ R++VP  FL+HP FK LL+++  EFGF     L +P
Sbjct:    31 YDEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDMGLTIP 90

Query:    96 CSVSTFQEIVSAV 108
             C    F+ + S +
Sbjct:    91 CEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR33 SAUR family protein (124 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	9e-31
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	4e-16
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	3e-11
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	3e-10

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  105 bits (263), Expect = 9e-31
 Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 6   MASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMAT-TPTGFFAVYVGEEQERFVVP 64
           MAS  K A   K      K                S +   P G FAVYVGEE  RFVVP
Sbjct: 1   MASRLKKASSAK------KWILSAASGRSRGSSSKSSSADVPKGHFAVYVGEETRRFVVP 54

Query: 65  TGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVE 109
             +L+HPLF+ LL+++  EFGF+Q   L +PC V  F+ ++  +E
Sbjct: 55  ISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 67.9 bits (166), Expect = 4e-16
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 29  KQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQ 88
           KQ     Y++       P G F VYVGE + R++VP  FL+HP F+ LL+++  EFGF+ 
Sbjct: 28  KQG----YDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDH 83

Query: 89  KDRLVVPCSVSTFQEIVS 106
              L +PC    F+ + S
Sbjct: 84  DMGLTIPCEEVVFRSLTS 101

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 55.5 bits (133), Expect = 3e-11
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 40  ASMATTPTGFFAVYVGE----EQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVV 94
           +S    P G  AVYVGE    E++RFVVP  FL+HP FK  L ++  EFGF      L +
Sbjct: 30  SSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTI 89

Query: 95  PCSVSTFQEIVSA 107
           PC    F +++++
Sbjct: 90  PCREEVFLDLIAS 102

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 53.2 bits (127), Expect = 3e-10
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 46  PTGFFAVYVGE--EQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSVSTFQ 102
           P G  AVYVGE  E++RFVVP  +L+HPLF+  L ++  E GF      L +PC   +F 
Sbjct: 40  PKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFL 99

Query: 103 EIVSA 107
            ++++
Sbjct: 100 HLITS 104

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	94.48
PRK02899	197	adaptor protein; Provisional	82.27

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.4e-39  Score=230.64  Aligned_cols=93  Identities=33%  Similarity=0.712  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHhhhhcCCCCCCcchhhhhhhhhhcccCCCCCCceEEEEEccCceeEEEeccCCCcHHHHHHHHHHhhhc
Q 035952            5 KMASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEF   84 (125)
Q Consensus         5 ~~~~l~ki~kkw~~~~~~~~~~~~~~~l~~~~~~~~~~~~vpkG~~~VyVG~~~~RfvVp~~~L~~P~F~~LL~~aeeEf   84 (125)
                      +++++++|+|||+++++...           ++++..+.+||+||||||||++++||+||++|||||+|++||++|||||
T Consensus        11 ~~~~~kq~l~r~~s~~~~~~-----------~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090         11 QTAMLKQILKRCSSLGKKQG-----------YDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             HHHHHHHHHHHHHHhcccCC-----------cccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            58999999999999977542           1223356789999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEecCCHHHHHHHHHHH
Q 035952           85 GFEQKDRLVVPCSVSTFQEIVSAV  108 (125)
Q Consensus        85 G~~~~G~L~iPC~~~~F~~vl~~l  108 (125)
                      ||+++|+|+|||+++.|++++|+|
T Consensus        80 Gf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         80 GFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCCcEEEeCCHHHHHHHHHHh
Confidence            999999999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=9.7e-36  Score=211.16  Aligned_cols=68  Identities=50%  Similarity=0.968  Sum_probs=66.0

Q ss_pred             CCCCCCceEEEEEccCceeEEEeccCCCcHHHHHHHHHHhhhcCCCCCCceEecCCHHHHHHHHHHHH
Q 035952           42 MATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVE  109 (125)
Q Consensus        42 ~~~vpkG~~~VyVG~~~~RfvVp~~~L~~P~F~~LL~~aeeEfG~~~~G~L~iPC~~~~F~~vl~~l~  109 (125)
                      ...+|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+|+
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=7.5e-34  Score=203.02  Aligned_cols=89  Identities=36%  Similarity=0.716  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhhhhcCCCCCCcchhhhhhhhhhcccCCCCCCceEEEEEcc----CceeEEEeccCCCcHHHHHHHHHHh
Q 035952            6 MASFKKLAKKVKVMSGGDKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGE----EQERFVVPTGFLSHPLFKMLLEKSY   81 (125)
Q Consensus         6 ~~~l~ki~kkw~~~~~~~~~~~~~~~l~~~~~~~~~~~~vpkG~~~VyVG~----~~~RfvVp~~~L~~P~F~~LL~~ae   81 (125)
                      .+.+|+|+|++. ++...+.++            +.+.+||+||||||||+    +++||+||++|||||.|++||++||
T Consensus         9 ~~~~k~~~~~~~-~~~~~~~~~------------~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~Ae   75 (105)
T PLN03220          9 SNATKQILKLNS-LANRNRTSS------------SSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAE   75 (105)
T ss_pred             HHHHHHHHHHHh-hcccccccc------------cccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHH
Confidence            356789999987 555432221            24568999999999997    5899999999999999999999999


Q ss_pred             hhcCCCC-CCceEecCCHHHHHHHHHH
Q 035952           82 NEFGFEQ-KDRLVVPCSVSTFQEIVSA  107 (125)
Q Consensus        82 eEfG~~~-~G~L~iPC~~~~F~~vl~~  107 (125)
                      |||||+| +|+|+|||+++.|++++..
T Consensus        76 EEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         76 EEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             HHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            9999999 5999999999999999864

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=2.2e-32  Score=196.32  Aligned_cols=69  Identities=39%  Similarity=0.829  Sum_probs=63.9

Q ss_pred             ccCCCCCCceEEEEEcc--CceeEEEeccCCCcHHHHHHHHHHhhhcCCCC-CCceEecCCHHHHHHHHHHH
Q 035952           40 ASMATTPTGFFAVYVGE--EQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQ-KDRLVVPCSVSTFQEIVSAV  108 (125)
Q Consensus        40 ~~~~~vpkG~~~VyVG~--~~~RfvVp~~~L~~P~F~~LL~~aeeEfG~~~-~G~L~iPC~~~~F~~vl~~l  108 (125)
                      +.+..||+||+|||||+  |++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|+++++.-
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            35678999999999997  58999999999999999999999999999998 59999999999999999753

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=94.48  E-value=0.074  Score=35.75  Aligned_cols=72  Identities=15%  Similarity=0.175  Sum_probs=49.0

Q ss_pred             EEEEccCceeEEEeccCCC-c--HHHHHHHHHHhhhcCCCCCCceEecCCHHHHHHHHHHHHcC-CC----CCChHHHHH
Q 035952           51 AVYVGEEQERFVVPTGFLS-H--PLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAVECS-NK----RFDFGNLVE  122 (125)
Q Consensus        51 ~VyVG~~~~RfvVp~~~L~-~--P~F~~LL~~aeeEfG~~~~G~L~iPC~~~~F~~vl~~l~~~-~~----~~~~~~~~~  122 (125)
                      ..-||  +++|.++.+-|. +  ..|..++........-..+|.+-|-++...|++||..++++ .-    ...++.+.+
T Consensus         2 ~lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~   79 (94)
T PF02214_consen    2 RLNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLE   79 (94)
T ss_dssp             EEEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred             EEEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence            34566  789999977776 4  47888887542222223468999999999999999999995 21    125666666


Q ss_pred             hh
Q 035952          123 EL  124 (125)
Q Consensus       123 ~~  124 (125)
                      |+
T Consensus        80 Ea   81 (94)
T PF02214_consen   80 EA   81 (94)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=82.27  E-value=1.3  Score=34.63  Aligned_cols=25  Identities=32%  Similarity=0.721  Sum_probs=21.6

Q ss_pred             cHHHHHHHHHHhhhcCCCCCCceEe
Q 035952           70 HPLFKMLLEKSYNEFGFEQKDRLVV   94 (125)
Q Consensus        70 ~P~F~~LL~~aeeEfG~~~~G~L~i   94 (125)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4577888999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	84.86
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	84.66
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	84.6
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	82.64

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=84.86  E-value=5.6  Score=26.66  Aligned_cols=75  Identities=12%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             CceEEEEEccCceeEEEeccCCC-cH--HHHHHHHHHhhhcC--CCCCCceEecCCHHHHHHHHHHHHcCCCC----CCh
Q 035952           47 TGFFAVYVGEEQERFVVPTGFLS-HP--LFKMLLEKSYNEFG--FEQKDRLVVPCSVSTFQEIVSAVECSNKR----FDF  117 (125)
Q Consensus        47 kG~~~VyVG~~~~RfvVp~~~L~-~P--~F~~LL~~aeeEfG--~~~~G~L~iPC~~~~F~~vl~~l~~~~~~----~~~  117 (125)
                      ...+.+.||  +.+|.+..+-|. +|  .|..+.... .++.  .+.+|.+-|.++...|++||..++.+.-.    +..
T Consensus         5 ~~~v~LNVG--G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~~   81 (107)
T 3drz_A            5 SKWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAE   81 (107)
T ss_dssp             CCEEEEEET--TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSCH
T ss_pred             CCEEEEEEC--CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCCH
Confidence            347788898  789999866553 44  566664321 1222  33568999999999999999999987532    244


Q ss_pred             HHHHHhh
Q 035952          118 GNLVEEL  124 (125)
Q Consensus       118 ~~~~~~~  124 (125)
                      .++.+|.
T Consensus        82 ~~l~~Ea   88 (107)
T 3drz_A           82 EGVLEEA   88 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5566653

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=84.66  E-value=3  Score=26.86  Aligned_cols=67  Identities=10%  Similarity=0.196  Sum_probs=46.4

Q ss_pred             EEEEEcc--CceeEEEeccCC--CcHHHHHHHHHHhhhcCCCCCCceEec-CCHHHHHHHHHHHHcCCCCCChHHH
Q 035952           50 FAVYVGE--EQERFVVPTGFL--SHPLFKMLLEKSYNEFGFEQKDRLVVP-CSVSTFQEIVSAVECSNKRFDFGNL  120 (125)
Q Consensus        50 ~~VyVG~--~~~RfvVp~~~L--~~P~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~F~~vl~~l~~~~~~~~~~~~  120 (125)
                      +.+.||+  +.++|-++-..|  ..|.|++++...-.|-   . ..+.+| .+...|+.++..+-.+.-..+.+++
T Consensus        11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~   82 (109)
T 2vkp_A           11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDEIDLEADTV   82 (109)
T ss_dssp             EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTH
T ss_pred             EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHH
Confidence            3455663  358898887777  5899999997653332   2 678997 7999999999999988766544433

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=84.60  E-value=1.9  Score=30.94  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=52.0

Q ss_pred             CCCceEEEEEccCceeEEEeccCC-CcHHHHHHHHHHhhhcCCC-CCCceEecCCHHHHHHHHHHHHcCCCC----CChH
Q 035952           45 TPTGFFAVYVGEEQERFVVPTGFL-SHPLFKMLLEKSYNEFGFE-QKDRLVVPCSVSTFQEIVSAVECSNKR----FDFG  118 (125)
Q Consensus        45 vpkG~~~VyVG~~~~RfvVp~~~L-~~P~F~~LL~~aeeEfG~~-~~G~L~iPC~~~~F~~vl~~l~~~~~~----~~~~  118 (125)
                      .....+.+.||  +.||.+..+-| ++|.  .+|..+....-+. .+|.+-|-.+...|++||..++++.-.    +.+.
T Consensus        32 ~~~~~V~LNVG--G~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~~p~~~~~~  107 (140)
T 2nz0_B           32 RQDELIVLNVS--GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECIS  107 (140)
T ss_dssp             TCCCEEEEEET--TEEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBCCCTTSCHH
T ss_pred             CCCCEEEEEEC--CEEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcCCCCCcCHH
Confidence            35668888998  78898886544 3332  2333333332333 358999999999999999999987632    3577


Q ss_pred             HHHHhh
Q 035952          119 NLVEEL  124 (125)
Q Consensus       119 ~~~~~~  124 (125)
                      .+.+|+
T Consensus       108 ~l~eEa  113 (140)
T 2nz0_B          108 AYDDEL  113 (140)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777774

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=82.64  E-value=1.7  Score=30.49  Aligned_cols=75  Identities=17%  Similarity=0.176  Sum_probs=51.0

Q ss_pred             CCceEEEEEccCceeEEEeccCC-CcHHHHHHHHHHhhhcCCC-CCCceEecCCHHHHHHHHHHHHcCCCC----CChHH
Q 035952           46 PTGFFAVYVGEEQERFVVPTGFL-SHPLFKMLLEKSYNEFGFE-QKDRLVVPCSVSTFQEIVSAVECSNKR----FDFGN  119 (125)
Q Consensus        46 pkG~~~VyVG~~~~RfvVp~~~L-~~P~F~~LL~~aeeEfG~~-~~G~L~iPC~~~~F~~vl~~l~~~~~~----~~~~~  119 (125)
                      ....+.+.||  +.||.+..+-| ++|.  .+|..++...-+. .+|.+-|..+...|++||..++++.-.    ..+..
T Consensus        11 ~~~~V~LNVG--G~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~p~~~~~~~   86 (124)
T 1s1g_A           11 QDELIVLNVS--GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISA   86 (124)
T ss_dssp             -CCEEEEEET--TEEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBCCCTTSCHHH
T ss_pred             CCCEEEEEeC--CEEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCCCCCCcCHHH
Confidence            4567888998  78899886554 2332  2333333332233 358999999999999999999987632    35677


Q ss_pred             HHHhh
Q 035952          120 LVEEL  124 (125)
Q Consensus       120 ~~~~~  124 (125)
                      +.+|+
T Consensus        87 l~~Ea   91 (124)
T 1s1g_A           87 YDDEL   91 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	82.72

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.72  E-value=0.25  Score=32.09  Aligned_cols=71  Identities=21%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             EEEEEccCceeEEEeccCC-CcHHHHHHHHHHhh-hcCCCCCCceEecCCHHHHHHHHHHHHcCCC---C-CChHHHHHh
Q 035952           50 FAVYVGEEQERFVVPTGFL-SHPLFKMLLEKSYN-EFGFEQKDRLVVPCSVSTFQEIVSAVECSNK---R-FDFGNLVEE  123 (125)
Q Consensus        50 ~~VyVG~~~~RfvVp~~~L-~~P~F~~LL~~aee-EfG~~~~G~L~iPC~~~~F~~vl~~l~~~~~---~-~~~~~~~~~  123 (125)
                      +...||  +.+|.+..+-| ++|..  +|..... .+--+.+|.+-|-.+...|++||..++++.-   . ...+.+.+|
T Consensus         2 I~LNVG--G~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~E   77 (105)
T d1nn7a_           2 IVLNVS--GTRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEE   77 (105)
T ss_dssp             EEEEET--TEEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred             EEEEEC--CEEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCccccCCCccHHHHHHH
Confidence            456787  78888886655 34421  1122222 2222346899999999999999999998762   1 356666665


Q ss_pred             h
Q 035952          124 L  124 (125)
Q Consensus       124 ~  124 (125)
                      +
T Consensus        78 a   78 (105)
T d1nn7a_          78 L   78 (105)
T ss_dssp             H
T ss_pred             H
Confidence            3