Citrus Sinensis ID: 035957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MSSIFWKHFHLCFSSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTSFLIKNFNSLYDQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIESSDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLLSSQDSDSRQRR
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHEccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mssifwkhfhlcfsslkclpsitpsppspsklqdqdnnpssptstSFLIKNFNslydqssdfstsksltpstddyfssdteadtvsppdfttifasqrfffsspgrsnsiiessdinksethhdqetplnggvavkkyspdpyqdFRCSMQEMIEARNLTDVMANCDFLHELLLCYltlnpkhtHKFIISAFADILISLLssqdsdsrqrr
Flexible Loop (DISEMBL)
MSSIFWKHFHLCFSSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTSFLIKNFNSLYDQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIESSdinksethhdqetplnggvavkkySPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLlssqdsdsrqrr
Low Complexity Region (SEG)
MSSIFWKHFHLCFSSLKCLpsitpsppspsKLQDQDNNPSSPTSTSFLIKNFNSLYDQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIESSDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFAdilisllssqdsdsrqrr
Disordered region (IsUnstruct)
*****************************************************************************************FTTIFASQRFFF*****************************************YQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLL***********
Disordered Region (DISOPRED)
****FW*HFHLCF**********************************************************************************************************************GVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILI**************
Disordered Region (DISEMBL)
MSSIFWKHFHLCFSSLKCLPSIT*********************TSFLIKNFNSLYDQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIES**************PLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLLS**********
Disordered Region (DISPRO)
*SSIFWKHFHLCFSSL*****************************SFL*K***SLYD***********************************************************************LNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLLSS*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSIFWKHFHLCFSSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTSFLIKNFNSLYDQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIESSDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLLSSQDSDSRQRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
147772925	428	hypothetical protein VITISV_037456 [Viti	0.952	0.469	0.625	3e-61
225432682	223	PREDICTED: uncharacterized protein LOC10	0.952	0.901	0.625	5e-61
224102069	211	predicted protein [Populus trichocarpa]	0.919	0.919	0.602	2e-48
224108035	218	predicted protein [Populus trichocarpa]	0.886	0.857	0.593	2e-47
255552171	230	conserved hypothetical protein [Ricinus	0.933	0.856	0.547	5e-45
297737058	224	unnamed protein product [Vitis vinifera]	0.786	0.741	0.538	8e-43
224085487	246	predicted protein [Populus trichocarpa]	0.900	0.772	0.426	6e-37
224062454	256	predicted protein [Populus trichocarpa]	0.924	0.761	0.394	8e-33
34015078	615	ethylene receptor [Litchi chinensis]	0.710	0.243	0.508	1e-32
255559394	211	conserved hypothetical protein [Ricinus	0.829	0.829	0.413	3e-32

>gi|147772925|emb|CAN67178.1| hypothetical protein VITISV_037456 [Vitis vinifera]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/216 (62%), Positives = 162/216 (75%), Gaps = 15/216 (6%)

Query: 1   MSSIFWKHFHLCFSSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTSF------LIKNFNS 54
           MSSI WK+F+LC S LKC P+  PS P PSK  D + +PSS +S+S       LIKNFNS
Sbjct: 1   MSSIIWKNFNLCLSKLKCFPTTLPSSP-PSK-HDHNRHPSSSSSSSISSTSSILIKNFNS 58

Query: 55  LYDQSSDFSTSKSLTPSTDDYFS-SDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIES 113
           LYD +SD STSKSLT +TDD+ S S+   D+ SPPDF T+FASQRFFFSSPGRSNSI E+
Sbjct: 59  LYDLTSD-STSKSLTRTTDDFLSTSEDSVDSESPPDFATVFASQRFFFSSPGRSNSIFEA 117

Query: 114 SDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELL 173
           S     E+  + +  +NGGVAV  YSP+PY+DFR SMQEM EAR L DV A+ D+LHELL
Sbjct: 118 S-----ESPPESDAIVNGGVAVHTYSPNPYEDFRRSMQEMAEARELRDVAADWDYLHELL 172

Query: 174 LCYLTLNPKHTHKFIISAFADILISLLSSQDSDSRQ 209
           LCYLTLNPKHTHKFII AFAD+++ L+SS  SD R+
Sbjct: 173 LCYLTLNPKHTHKFIIRAFADLIVCLMSSTASDGRR 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432682|ref|XP_002278578.1| PREDICTED: uncharacterized protein LOC100261343 [Vitis vinifera]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/216 (62%), Positives = 163/216 (75%), Gaps = 15/216 (6%)

Query: 1   MSSIFWKHFHLCFSSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTS------FLIKNFNS 54
           MSSI WK+F+LC S LKC P+  PS P PSK  D + +PSS +S+S       LIKNFNS
Sbjct: 1   MSSIIWKNFNLCLSKLKCFPTTLPSSP-PSK-HDHNRHPSSSSSSSISSTSSVLIKNFNS 58

Query: 55  LYDQSSDFSTSKSLTPSTDDYFS-SDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIES 113
           LYD +SD STSKSLT +TDD+ S S+   D+ SPPDF T+FASQRFFFSSPGRSNSI E+
Sbjct: 59  LYDLTSD-STSKSLTRTTDDFLSTSEDSVDSESPPDFATVFASQRFFFSSPGRSNSIFEA 117

Query: 114 SDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELL 173
           S     E+  + ++ +NGGVAV  YSP+PY+DFR SMQEM EAR L DV A+ D+LHELL
Sbjct: 118 S-----ESPPESDSIVNGGVAVHTYSPNPYEDFRRSMQEMAEARELRDVAADWDYLHELL 172

Query: 174 LCYLTLNPKHTHKFIISAFADILISLLSSQDSDSRQ 209
           LCYLTLNPKHTHKFII AFAD+++ L+SS  SD R+
Sbjct: 173 LCYLTLNPKHTHKFIIRAFADLIVCLMSSTASDGRR 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102069|ref|XP_002312533.1| predicted protein [Populus trichocarpa] gi|222852353|gb|EEE89900.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/219 (60%), Positives = 158/219 (72%), Gaps = 25/219 (11%)

Query: 1   MSSIFWKHFHLCFSSLKCLPSITPSP-PSPS-KLQD-QDNNPSSPT----STSFLIKNFN 53
           M  IFWK+       LKCLP+I PS  P PS +LQ+ +D  PSS T    +TS +I+NFN
Sbjct: 1   MPPIFWKNI------LKCLPTIIPSSHPLPSDQLQEYRDPLPSSTTLISPTTSIIIQNFN 54

Query: 54  SLYDQSSDFSTSKSL-TPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIE 112
           S YD SS   TSKSL TPST+ + SS +++DT S  DF TI ASQR FFSSPGRSNSIIE
Sbjct: 55  SPYDLSSA-PTSKSLSTPSTNSFSSSYSDSDTESNLDFATILASQRLFFSSPGRSNSIIE 113

Query: 113 SSDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHEL 172
           S          + +TP++GGVA+KKYSPDPY DF+ SMQEMIEAR L DV A  D+LHEL
Sbjct: 114 SLP--------EPQTPVSGGVAIKKYSPDPYTDFKHSMQEMIEARELRDVRAKWDYLHEL 165

Query: 173 LLCYLTLNPKHTHKFIISAFADILISLLS--SQDSDSRQ 209
           L CYL LNPKHTHKFIISAFADI++ LLS  SQ+SD+++
Sbjct: 166 LSCYLKLNPKHTHKFIISAFADIVVCLLSSPSQESDTQR 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108035|ref|XP_002314697.1| predicted protein [Populus trichocarpa] gi|222863737|gb|EEF00868.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 148/209 (70%), Gaps = 22/209 (10%)

Query: 1   MSSIFWKHFHLCFSSLKCLPSITPSP-PSPSKLQDQDN------NPSSPTSTSFLIKNFN 53
           M +IFWK+       LKCLP+ITPS  P PS+LQ+  +        ++PT TS +IKNFN
Sbjct: 1   MPTIFWKNI------LKCLPTITPSSHPLPSELQEHSDPLLSSATAAAPT-TSVMIKNFN 53

Query: 54  SLYDQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIES 113
           SLYD SS  ++    TPST+   SS ++ DT S PDF TI ASQRFF SSPGRSNSIIES
Sbjct: 54  SLYDLSSASTSKSLSTPSTNSSSSSYSDPDTDSTPDFATIIASQRFFSSSPGRSNSIIES 113

Query: 114 SDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELL 173
                 E H    TP++GGVA+KKYS DPY DF+ SMQEMIEAR + DV AN D+LHEL+
Sbjct: 114 ----MQELH----TPVSGGVAIKKYSLDPYIDFKNSMQEMIEAREIRDVRANWDYLHELI 165

Query: 174 LCYLTLNPKHTHKFIISAFADILISLLSS 202
            CYL LNPK+THKFIISAFADI++ LLSS
Sbjct: 166 SCYLKLNPKNTHKFIISAFADIIVCLLSS 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552171|ref|XP_002517130.1| conserved hypothetical protein [Ricinus communis] gi|223543765|gb|EEF45293.1| conserved hypothetical protein [Ricinus communis]

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/219 (54%), Positives = 143/219 (65%), Gaps = 22/219 (10%)

Query: 1   MSSIFWKHFHLCFSSLKCLPSITPSPPSPSKLQDQDN------------NPSSPTSTSFL 48
           MS  FWK+       LKCLP+ T S  + +  Q+  +              +  ++ S +
Sbjct: 1   MSIFFWKNL------LKCLPTTTASSNALNSEQEHTHLLPPPTVSTTTTIATDSSTASIM 54

Query: 49  IKNFNSLYDQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSN 108
           IKN NSLYD SS  ++    TPST  + SS + +D  SPPDF  IFASQRFFFSSPGRSN
Sbjct: 55  IKNVNSLYDLSSASTSKSLSTPSTYSFSSSSSGSDVDSPPDFAAIFASQRFFFSSPGRSN 114

Query: 109 SIIESSDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDF 168
           SIIES +   +E     +TPLNGGVAVKKYSPDPY DFR SM EMIEAR   DV A+ D+
Sbjct: 115 SIIESPETPSAEP----QTPLNGGVAVKKYSPDPYADFRQSMLEMIEARKPRDVKADWDY 170

Query: 169 LHELLLCYLTLNPKHTHKFIISAFADILISLLSSQDSDS 207
           LHELL CYL LNPK THKFIISAFADI+I LL+S  S+S
Sbjct: 171 LHELLSCYLNLNPKQTHKFIISAFADIVICLLTSSSSES 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737058|emb|CBI26259.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 134/208 (64%), Gaps = 42/208 (20%)

Query: 9   FHLCFSSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTS------FLIKNFNSLYDQSSDF 62
           F+LC S LKC P+  PS P PSK  D + +PSS +S+S       LIKNFNSLYD +SD 
Sbjct: 37  FNLCLSKLKCFPTTLPSSP-PSK-HDHNRHPSSSSSSSISSTSSVLIKNFNSLYDLTSD- 93

Query: 63  STSKSLTPSTDDYFS-SDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIESSDINKSET 121
           STSKSLT +TDD+ S S+   D+ SPPDF T              S+SI+          
Sbjct: 94  STSKSLTRTTDDFLSTSEDSVDSESPPDFAT--------------SDSIV---------- 129

Query: 122 HHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNP 181
                   NGGVAV  YSP+PY+DFR SMQEM EAR L DV A+ D+LHELLLCYLTLNP
Sbjct: 130 --------NGGVAVHTYSPNPYEDFRRSMQEMAEARELRDVAADWDYLHELLLCYLTLNP 181

Query: 182 KHTHKFIISAFADILISLLSSQDSDSRQ 209
           KHTHKFII AFAD+++ L+SS  SD R+
Sbjct: 182 KHTHKFIIRAFADLIVCLMSSTASDGRR 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085487|ref|XP_002307592.1| predicted protein [Populus trichocarpa] gi|222857041|gb|EEE94588.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/251 (42%), Positives = 138/251 (54%), Gaps = 61/251 (24%)

Query: 1   MSSIFWKHFHLCFSSLKCLPSITPSPP---SPSKLQDQDNNPSSPTSTSFLIKNFNSLYD 57
           M+    ++ +LCF+ ++      P PP   SP+ L   D++     S +FLIKN+NSLYD
Sbjct: 1   MAGTIGRNLNLCFTKIR-----RPLPPHDQSPTTLLTPDDH-----SHTFLIKNYNSLYD 50

Query: 58  QSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIES---- 113
            + D ++S + +            + + S PDF T+ ASQRFFFSSPGRSNSIIES    
Sbjct: 51  PTIDSASSSTSS-----------SSSSSSEPDFATVCASQRFFFSSPGRSNSIIESTPSI 99

Query: 114 --------------SDINKSETHHDQETPL-------------------NGGVAVKKYSP 140
                         SD N   T+   +  L                      VAV  YSP
Sbjct: 100 VTSSDSSDNLVAPQSDSNGLTTNPSNDKSLLVDSCNNSTHPQLLKSPTVKDSVAVPTYSP 159

Query: 141 DPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLL 200
           DPY DFR SMQEM+EAR+L DV AN ++LHELL CYL LNPK +HKFI+ AFAD+L+SLL
Sbjct: 160 DPYMDFRRSMQEMVEARDLVDVNANWEYLHELLSCYLDLNPKSSHKFIVGAFADLLVSLL 219

Query: 201 SSQDSDSRQRR 211
           SSQ  +   RR
Sbjct: 220 SSQMPEDAGRR 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062454|ref|XP_002300836.1| predicted protein [Populus trichocarpa] gi|222842562|gb|EEE80109.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/256 (39%), Positives = 136/256 (53%), Gaps = 61/256 (23%)

Query: 1   MSSIFWKHFHLCFSSLKCLPSITPSPPSPSKLQDQDNNPSSPTSTS--FLIKNFNSLYDQ 58
           M+    ++ +LCF + K    + P    PS       NP +P   S  FL KN+NSLYD 
Sbjct: 1   MAGTAGRNLNLCFIN-KIKRPLPPDHQPPS-------NPLTPDDHSHPFLFKNYNSLYDH 52

Query: 59  SSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIESS---- 114
           + D +++ + T  +    SS+        PDF +++ASQRFFFSSPG SNSIIES+    
Sbjct: 53  TIDSASASTSTSISSSSSSSE--------PDFASVYASQRFFFSSPGSSNSIIESTPSIV 104

Query: 115 --------------------------------DINKSETHHDQETP-------LNGGVAV 135
                                             N S   HDQ+ P       +   +AV
Sbjct: 105 TSTESSDNLVAPQPDSNGLIINHSTGKSLLLDGCNNSHPLHDQQPPQLLKSPTVKDSMAV 164

Query: 136 KKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADI 195
             YS DPY DFR SMQEM++AR+L DV AN ++LHELL  YL+LNPK THKFI+ AFAD+
Sbjct: 165 STYSHDPYMDFRRSMQEMVDARDLVDVKANWEYLHELLSSYLSLNPKSTHKFIVGAFADL 224

Query: 196 LISLLSSQDSDSRQRR 211
           L+SLLS++ ++   RR
Sbjct: 225 LVSLLSTEMTEDGGRR 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34015078|gb|AAQ56281.1| ethylene receptor [Litchi chinensis]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/179 (50%), Positives = 103/179 (57%), Gaps = 29/179 (16%)

Query: 35  QDNNPSSPTSTSFLIKNFNSLYD--QSSDFS-TSKSLTPSTDDYFSSDTEADTVSPPDFT 91
           Q  +P   TS S LIKNFNSLYD   S+ F  TSKSL  +     +   E D+ S PDF 
Sbjct: 61  QGADPVESTSESILIKNFNSLYDYNNSTTFDPTSKSLILTQSSSSTLSYEPDSDSEPDFA 120

Query: 92  TIFASQRFFFSSPGRSNSIIESS---------DINKSETHHDQETPLNG----------- 131
           T+ ASQRFFF+SPG SNSIIESS         D + S   H     LN            
Sbjct: 121 TVVASQRFFFTSPGSSNSIIESSPSIATLESSDTSVSMISHGVNQSLNNFSDRSLLKSWK 180

Query: 132 ------GVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHT 184
                  VAV  YSPDPY DFR SMQEM+EAR+L DV +N D+LHELLLCYL LNPK T
Sbjct: 181 SPSVKDSVAVPTYSPDPYLDFRQSMQEMVEARDLVDVRSNLDYLHELLLCYLALNPKTT 239

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559394|ref|XP_002520717.1| conserved hypothetical protein [Ricinus communis] gi|223540102|gb|EEF41679.1| conserved hypothetical protein [Ricinus communis]

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/244 (41%), Positives = 124/244 (50%), Gaps = 69/244 (28%)

Query: 1   MSSIFWKHFHLCFSSLKC-LPSITPSPPSPSKLQDQDNNPSSPTSTSFLIKNFNSLYDQS 59
           M     K+ HLCF+ +K  L S +PS                 TS   +I N+NSL++  
Sbjct: 1   MPVTLGKNLHLCFTKIKNPLESESPS-----------------TSHPLVINNYNSLFESK 43

Query: 60  SDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIES--SDIN 117
           S   +S S  P                  DF T+FASQRFFFSSPG SNSIIES  S + 
Sbjct: 44  SPPRSSSSSEP------------------DFATVFASQRFFFSSPGHSNSIIESTPSIVT 85

Query: 118 KSETHHD---------QETPLNGG----------------------VAVKKYSPDPYQDF 146
            +E+ +            TPL+                        VAV  YSPDPY DF
Sbjct: 86  PTESSNSLVSLKCNATAATPLSDSSTTNQSNRSSLESLTPPTIKDSVAVPTYSPDPYLDF 145

Query: 147 RCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLLSSQDSD 206
           R SMQEM+EAR+  DV  N D+LHELLLCYL LNPK THKFI+ AFAD+L+SLL+S  S 
Sbjct: 146 RRSMQEMVEARDFVDVKENWDYLHELLLCYLALNPKSTHKFIVRAFADLLVSLLASPSST 205

Query: 207 SRQR 210
            +  
Sbjct: 206 QKAE 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2201011	226	OFP12 "ovate family protein 12	0.658	0.615	0.482	2.2e-27
TAIR|locus:2130399	182	OFP11 "AT4G14860" [Arabidopsis	0.701	0.813	0.396	1.7e-20
TAIR|locus:2045472	244	OFP16 "ovate family protein 16	0.696	0.602	0.376	7.9e-14
TAIR|locus:2079969	282	OFP18 "ovate family protein 18	0.706	0.528	0.301	7.2e-12
TAIR|locus:2039290	261	OFP15 "ovate family protein 15	0.502	0.406	0.352	1.4e-11
TAIR|locus:2046308	315	OFP7 "ovate family protein 7"	0.611	0.409	0.326	4.2e-11
TAIR|locus:2016344	294	OFP14 "ovate family protein 14	0.421	0.302	0.402	5.3e-11
TAIR|locus:2175453	260	OFP13 "ovate family protein 13	0.592	0.480	0.330	7e-11
TAIR|locus:2064382	320	OFP2 "ovate family protein 2"	0.260	0.171	0.559	1.5e-10
TAIR|locus:504955854	159	OFP6 "ovate family protein 6"	0.464	0.616	0.392	6.6e-10

TAIR|locus:2201011 OFP12 "ovate family protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 70/145 (48%), Positives = 89/145 (61%)

Query:    52 FNSLYDQSSDFSTSKSLTPSTDDY-FSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSI 110
             F +    +++ S+S +    +D+Y F+ D   D   PPD T + AS+RFFFSSPG SNSI
Sbjct:    71 FTASTSTAANSSSSSASYDDSDNYGFAPD---DDSPPPDLTAVLASRRFFFSSPGCSNSI 127

Query:   111 IESSDINKSETHHDQETPLNGGVAVKKY--SPDPYQDFRCSMQEMIEARNLTDVMANCDF 168
              +S D+   + +      L GG AVK Y  SPDPY DFR SMQEMI+A      +   +F
Sbjct:   128 TDSPDLRCRDNYDTATRLLTGGTAVKHYVQSPDPYNDFRRSMQEMIDAVTNAGDLRRYEF 187

Query:   169 LHELLLCYLTLNPKHTHKFIISAFA 193
             LHELLL YL+LN   THKFII AFA
Sbjct:   188 LHELLLSYLSLNAADTHKFIIRAFA 212

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2130399 OFP11 "AT4G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 65/164 (39%), Positives = 93/164 (56%)

Query:    45 TSFLIKNFNSLYDQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTTIFAS--QRFFFS 102
             ++FL K  +  +  S   S S   +P      ++ +     +P  F   F S   +   S
Sbjct:     2 SNFLRKKLHLCFSSSGGLSPSIPSSPIIVSNHNAQSHPHH-TPSIFINNFNSLYDQLSVS 60

Query:   103 SP-GRSNSIIESSDI---NKSETHHDQETP------LNGGVAVKKY--SPDPYQDFRCSM 150
             SP  R +S    + +   N+ E   + ET       L+GG A+ K+  SPDPY+DF  SM
Sbjct:    61 SPLHRRHSSENPAGVFSTNRREEEEEDETTTSVSKLLSGGTAIMKHIESPDPYRDFGRSM 120

Query:   151 QEMIEARNLT-DVMANCDFLHELLLCYLTLNPKHTHKFIISAFA 193
             +EM+EAR+LT DV+A+ ++LHELL CYL LNPKHTH+FI+SAFA
Sbjct:   121 REMVEARDLTRDVVADREYLHELLFCYLYLNPKHTHRFIVSAFA 164

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2045472 OFP16 "ovate family protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 64/170 (37%), Positives = 86/170 (50%)

Query:    39 PSSPTSTSFLIKNFNSLYDQSSDFSTSKSLT-PSTDDYFSSD--TEADTVSPPDFTTIFA 95
             PSS T+T+    + +S     SD S   S    S   +FSS   + A T SP        
Sbjct:    69 PSSSTTTTPAATSSSSTSSYESDISPDVSAAFASRRFFFSSPGRSNAITDSPEP-----R 123

Query:    96 SQRFFFSSPGRSNSIIESSDINKSETHHDQETP-----LNGGVAVKKY--SPDPYQDFRC 148
             S+ F   S    ++ I S+   K + + +  T      ++GG AV ++  SPDP  DFR 
Sbjct:   124 SREF---SDNYDDATITSTKKKKKKVYDNSVTTTTTRLISGGTAVTQHVDSPDPLTDFRR 180

Query:   149 SMQEMIEAR----NLT-DVMANCDFLHELLLCYLTLNPKHTHKFIISAFA 193
             SMQEMI+A      L+ D     DFL ELLL YL+LNP  THKF+I AF+
Sbjct:   181 SMQEMIDAAIDAGELSRDPNDGYDFLDELLLTYLSLNPADTHKFVIRAFS 230

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2079969 OFP18 "ovate family protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 50/166 (30%), Positives = 83/166 (50%)

Query:    35 QDNNPSSPTSTSFLIKNFNSLYDQSSDFSTSKSLTPSTDDYFS-SDTEADTVSPPDFTTI 93
             Q N  +  +  SF++     +Y+       S S +PS+  Y S S T     +PP+  +I
Sbjct:    37 QQNLKTISSKASFIVNKPKDVYEPEPP-PRSFSSSPSSSSYSSFSSTSHAIENPPEIESI 95

Query:    94 F-------ASQRFFFSSPGRSNSIIESSDINKSETHHDQETPLNGGVAVKKYSPDPYQDF 146
                     +S+R  F   G SNSI+E +   K + H ++E   +G + +   S DPY DF
Sbjct:    96 ENVIKGLKSSKRLIFERRGTSNSILEEA--TKRDDHEEEE---DGLMLLSLESNDPYTDF 150

Query:   147 RCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAF 192
             + SM++M+E   L     +   L +LL  +L +N K +H++I +AF
Sbjct:   151 KNSMEKMVEVHVLHHDWIS---LEKLLFWFLKVNVKASHRYIFAAF 193

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2039290 OFP15 "ovate family protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 43/122 (35%), Positives = 65/122 (53%)

Query:    79 DTEADTVSPPDFTT--------IFASQRFFFSSPGRSNSIIESSDINKSETHHDQETPLN 130
             D E D + PP+ T         + +S+R  F S G +NSI+E +   + E   D+E    
Sbjct:    53 DDELDLLDPPEITDSVENVIKGLRSSERLIFESKGETNSILEEATSKREE--EDEE---E 107

Query:   131 GGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIIS 190
             G +     S DPY DF+ SM+EM+EA  L     +   L +LLL +L +N K +H++I +
Sbjct:   108 GFMLFSLESDDPYSDFKRSMEEMVEAHALHHDWKS---LEKLLLQFLKVNAKTSHRYIFA 164

Query:   191 AF 192
             AF
Sbjct:   165 AF 166

GO:0009507 "chloroplast" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2046308 OFP7 "ovate family protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
 Identities = 45/138 (32%), Positives = 68/138 (49%)

Query:    57 DQSSDFSTSKSLTPSTDDYFSSDTEADTVSPPDFTT-IFASQRFFFSSPGRSNSIIESSD 115
             D+ S   +S +L+P   +Y SS+    T  P          +    SSP  S + + SS 
Sbjct:   155 DRESLLPSSTNLSP---EYSSSELPRVTRRPRQLLKKAVIEEESESSSPPPSPARL-SSF 210

Query:   116 INKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLC 175
             + +          +  GVAV K S DPY+DF+ SM EMI  + + +V      L +LL C
Sbjct:   211 VQRLMPCTMAAAVMVEGVAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAE----LEQLLSC 266

Query:   176 YLTLNPKHTHKFIISAFA 193
             +L+LN K  H+ I+ AF+
Sbjct:   267 FLSLNAKRHHRAIVRAFS 284

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2016344 OFP14 "ovate family protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 37/92 (40%), Positives = 57/92 (61%)

Query:   102 SSPGRSNSIIESSDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEAR-NLT 160
             SS GR  S+  +S  ++ ++      P N  +AV +Y+ +P +DFR SM EM+E++  + 
Sbjct:   164 SSEGRP-SMETTSTSSERQSRSTLVLPENC-IAVLRYTDEPQEDFRQSMVEMMESKLGMR 221

Query:   161 DVMANCDFLHELLLCYLTLNPKHTHKFIISAF 192
             +   + D + ELL CYL LN K +HKFI+SAF
Sbjct:   222 ESEVDWDLMEELLFCYLDLNDKKSHKFILSAF 253

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2175453 OFP13 "ovate family protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 46/139 (33%), Positives = 71/139 (51%)

Query:    64 TSKSLTPSTDDYFSSDTEADTVSPPDFTTIFASQRFFFSSPGRSNSIIES------SDIN 117
             T+ S T S       D +A+++       +  S+R FF  PG ++SI+E       SD+ 
Sbjct:    71 TNSSETASHSTESDQDLDAESLEMV-VRGVVRSERLFFD-PGVTSSILEEIEEKSKSDLK 128

Query:   118 KSET---HHDQETPLNG-GVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELL 173
               ET     D+ TP+    VAV   S DPY DFR SM+EM+ +    ++  + + L  +L
Sbjct:   129 SKETVAVGEDRSTPIEEISVAVAMESEDPYGDFRRSMEEMVTSHG--ELAKDWESLESML 186

Query:   174 LCYLTLNPKHTHKFIISAF 192
               YL +N + +H  I+SAF
Sbjct:   187 AWYLRMNGRKSHGVIVSAF 205

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2064382 OFP2 "ovate family protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 33/59 (55%), Positives = 37/59 (62%)

Query:   134 AVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAF 192
             AV K S DP +DFR SM EMIE  N   + A+ D L +LL CYLTLNPK  H  II  F
Sbjct:   255 AVMKRSVDPKKDFRESMIEMIEENN---IRASKD-LEDLLACYLTLNPKEYHDLIIHVF 309

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048513 "organ development" evidence=RCA

TAIR|locus:504955854 OFP6 "ovate family protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 42/107 (39%), Positives = 55/107 (51%)

Query:    88 PDFTTIFASQRFFFSSPGRSNSIIESSDINKSETHHDQETPL-NGGVAVKKYSPDPYQDF 146
             P F +IF    FF   P R +S       + S       TPL    VAV+K S DPY DF
Sbjct:    26 PTFASIF---NFFSKKPKRPSSTYRHCHSSISSAT-PSSTPLATASVAVEKDSDDPYLDF 81

Query:   147 RCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFA 193
             R SM +MI    L + + + D L ELL C+L+LN  + H  I+ AF+
Sbjct:    82 RQSMLQMI----LENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFS 124

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019999001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (223 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
TIGR01568	66	TIGR01568, A_thal_3678, uncharacterized plant-spec	4e-29
pfam04844	60	pfam04844, Ovate, Transcriptional repressor, ovate	7e-27

>gnl|CDD|130631 TIGR01568, A_thal_3678, uncharacterized plant-specific domain TIGR01568

 Score =  103 bits (258), Expect = 4e-29
 Identities = 42/69 (60%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 133 VAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAF 192
           VAV K S DPY+DFR SM+EMIE R L    A+   L ELL CYL LNPK +H+FI+ AF
Sbjct: 1   VAVAKESDDPYEDFRRSMEEMIEERELE---ADWKELEELLACYLDLNPKKSHRFIVRAF 57

Query: 193 ADILISLLS 201
            DIL +LLS
Sbjct: 58  VDILSALLS 66

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence. Length = 66

>gnl|CDD|191110 pfam04844, Ovate, Transcriptional repressor, ovate

 Score = 96.9 bits (242), Expect = 7e-27
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 139 SPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILIS 198
           S DPY+DFR SM EMI    + D     D L ELL CYL+LN K  H+ I++AFAD+ ++
Sbjct: 1   SSDPYEDFRRSMVEMIVENGIRDW----DDLEELLACYLSLNAKEHHRAIVAAFADVWVA 56

Query: 199 LLSS 202
           L + 
Sbjct: 57  LFAP 60

This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
TIGR01568	66	A_thal_3678 uncharacterized plant-specific domain	100.0
PF04844	59	Ovate: Transcriptional repressor, ovate; InterPro:	99.98

>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568

Probab=100.00  E-value=6e-36  Score=218.61  Aligned_cols=66  Identities=64%  Similarity=0.975  Sum_probs=63.2

Q ss_pred             EEEEeeCCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHcc
Q 035957          133 VAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLLS  201 (211)
Q Consensus       133 vAVvk~S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~~L~s  201 (211)
                      |||+|+|.|||.|||+||+|||+++|+.   .+|++|||||+|||+||+++||++|++||+|||++|++
T Consensus         1 vAv~k~S~DPy~DFr~SM~EMI~~~~i~---~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl~~~L~~   66 (66)
T TIGR01568         1 VAVAKESDDPYEDFRRSMEEMIEERELE---ADWKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS   66 (66)
T ss_pred             CeeeeCCCChHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhC
Confidence            6999999999999999999999999986   47999999999999999999999999999999999974

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.

>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length

Probab=99.98  E-value=9.4e-33  Score=197.85  Aligned_cols=59  Identities=54%  Similarity=0.914  Sum_probs=56.9

Q ss_pred             CCChHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHcc
Q 035957          139 SPDPYQDFRCSMQEMIEARNLTDVMANCDFLHELLLCYLTLNPKHTHKFIISAFADILISLLS  201 (211)
Q Consensus       139 S~DPy~DFR~SM~EMI~a~~i~~~~~dwd~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~~L~s  201 (211)
                      |.|||+|||+||+|||+++|++    +|++|||||+|||+||+++||++||+||+|||++|++
T Consensus         1 S~DP~~DFr~SM~EMI~~~~i~----~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv~~~l~s   59 (59)
T PF04844_consen    1 SSDPYEDFRESMVEMIEENGIR----DWDDLEELLACYLSLNSPEHHKFIVEAFVDVWVELFS   59 (59)
T ss_pred             CCCHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHhC
Confidence            7899999999999999999997    6999999999999999999999999999999999975

At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 42/159 (26%)

Query: 56  YDQSSDFSTSKSLTPSTDDYF--------SSDTEADTVSPPDFTTIFASQRFFFSSPGRS 107
           Y+    F +   + P  D YF         +    + ++   F  +F   RF        
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT--LFRMVFLDFRFL------E 504

Query: 108 NSIIESSDINKSETHHDQETPLNGGVAVKKYSPDPYQDFRCSMQEMIEARNLTDVMANCD 167
             I   S            T  N   ++     +  Q  +     + +         N  
Sbjct: 505 QKIRHDS------------TAWNASGSI----LNTLQQLKFYKPYICD---------NDP 539

Query: 168 FLHELLLCYLTLNPKHTHKFIISAFADIL-ISLLSSQDS 205
               L+   L   PK     I S + D+L I+L++  ++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00