Citrus Sinensis ID: 035967

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSSMLWQEFSF
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHcccccccccccccHHcHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHHHcccEEEEccccc
ccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHcccEEEEccHHHHHccccHHHHHHHHHHHHHHHHHHHcHHccHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccEEEEcHHHHHcccHHHHHHHHHHHHccccEHHHHHHHcccccEccEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccEEccccccccccHHHHHHHHHHccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
klinvavpgtideraintkrllnpwernenhtlcLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLAdlnlkktpqllqLVDDSKDVeelmslppeKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVlapehsnpstlavkNPLQRAKLILEHADRMGCRRYLTAKdivegspnlNLAFVAHIFQHRWVLLETLdklspgivnwkiankppiklpfrkvenCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNlrfhshgkeitdaDILQWANAKVrisgsqshmnsfkdkslaDGIFFLELLSAVQPRAVNWSLVTKGVtgmfssnhTRCAVTLIGNSSMLWQEFSF
klinvavpgtideraintkrllnpweRNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIAnkppiklpfrkVENCNQVVKIGKQLKFSLVNiagndivqGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSSMLWQEFSF
KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSSMLWQEFSF
****VAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAP*******LAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRIS********FKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSSMLWQ****
KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQ**************PPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQL*****************ILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKG*TGMFSSNHTRCAVTLIGNSSMLWQEFSF
KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSSMLWQEFSF
*LINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSSMLWQEFSF
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KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHRWVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVTGMFSSNHTRCAVTLIGNSSMLWQEFSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
Q9FKI0687 Fimbrin-like protein 2 OS no no 0.929 0.515 0.662 1e-155
Q7G188687 Fimbrin-1 OS=Arabidopsis no no 0.929 0.515 0.661 1e-155
Q9FJ70 714 Putative fimbrin-like pro no no 0.923 0.492 0.635 1e-151
P54680610 Fimbrin OS=Dictyostelium yes no 0.908 0.567 0.423 4e-82
O59945614 Fimbrin OS=Schizosaccharo yes no 0.960 0.596 0.384 3e-81
P32599642 Fimbrin OS=Saccharomyces yes no 0.960 0.570 0.384 2e-79
Q3V0K9630 Plastin-1 OS=Mus musculus yes no 0.908 0.549 0.415 3e-78
Q6P698624 Plastin-2 OS=Danio rerio yes no 0.950 0.580 0.390 7e-77
Q63598630 Plastin-3 OS=Rattus norve yes no 0.952 0.576 0.395 1e-76
A6H742630 Plastin-1 OS=Bos taurus G yes no 0.908 0.549 0.405 3e-76
>sp|Q9FKI0|FIMB2_ARATH Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1 Back     alignment and function desciption
 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 269/406 (66%), Positives = 307/406 (75%), Gaps = 52/406 (12%)

Query: 1   KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
           KLINVAVPGTIDERAINTK+ LNPWERNEN TL LNSAKAIGCTVVNIGTQD  EGR +L
Sbjct: 167 KLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGCTVVNIGTQDIAEGRPYL 226

Query: 61  VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
           VLG+ISQIIKIQ+LADLN KKTP L QLVDD++D EELM L PEK+LL+WMNFHLKKAGY
Sbjct: 227 VLGLISQIIKIQMLADLNFKKTPSLFQLVDDTQDAEELMGLAPEKVLLKWMNFHLKKAGY 286

Query: 121 KKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLT 180
           +K VTNFSSD+KDGEAYA LLN LAPEHS    L  K+P +RAK +LE A+++ C+RYL+
Sbjct: 287 EKQVTNFSSDLKDGEAYAYLLNALAPEHSTHVALETKDPTERAKKVLEQAEKLDCKRYLS 346

Query: 181 AKDIVEGSPNLNLAFVAHIFQHR------------------------------------- 203
            KDIV+GS NLNLAFVA IFQHR                                     
Sbjct: 347 PKDIVDGSANLNLAFVAQIFQHRNGLTVDDSKTSFAEMMTDDVETSREERCFRLWINSLG 406

Query: 204 ---------------WVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQL 248
                          WVLLE LDK+SPG VNWK ANKPPIK+PF+KVENCN+V+KIGK+L
Sbjct: 407 TATYVNNVFEDLRNGWVLLEVLDKVSPGSVNWKHANKPPIKMPFKKVENCNEVIKIGKEL 466

Query: 249 KFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAK 308
           +FSLVN+AGNDIVQGNKKL+LA LWQ+MRY +LQLL+NLR HS GKEITDADIL WAN K
Sbjct: 467 RFSLVNVAGNDIVQGNKKLLLAFLWQLMRYTMLQLLRNLRSHSQGKEITDADILNWANRK 526

Query: 309 VRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVT 354
           V+  G  S  +SF+DK+L+ G+FFLELLSAV+PR VNWSLVT G T
Sbjct: 527 VKRGGRTSQADSFRDKNLSSGMFFLELLSAVEPRVVNWSLVTNGET 572
Cross-links actin filaments (F-actin). Stabilizes and prevents F-actin depolymerization mediated by profilin. May regulate actin cytoarchitecture, cell cycle, cell division, cell elongation and cytoplasmic tractus.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7G188|FIMB1_ARATH Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2 Back     alignment and function description
>sp|Q9FJ70|FIMB3_ARATH Putative fimbrin-like protein 3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1 Back     alignment and function description
>sp|P54680|FIMB_DICDI Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 SV=2 Back     alignment and function description
>sp|O59945|FIMB_SCHPO Fimbrin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fim1 PE=1 SV=1 Back     alignment and function description
>sp|P32599|FIMB_YEAST Fimbrin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAC6 PE=1 SV=1 Back     alignment and function description
>sp|Q3V0K9|PLSI_MOUSE Plastin-1 OS=Mus musculus GN=Pls1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P698|PLSL_DANRE Plastin-2 OS=Danio rerio GN=lcp1 PE=2 SV=1 Back     alignment and function description
>sp|Q63598|PLST_RAT Plastin-3 OS=Rattus norvegicus GN=Pls3 PE=2 SV=2 Back     alignment and function description
>sp|A6H742|PLSI_BOVIN Plastin-1 OS=Bos taurus GN=PLS1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
224065468 660 predicted protein [Populus trichocarpa] 0.929 0.536 0.805 0.0
359497563 518 PREDICTED: fimbrin-1-like, partial [Viti 0.929 0.683 0.790 0.0
255572648 660 fimbrin, putative [Ricinus communis] gi| 0.929 0.536 0.788 0.0
147840522 652 hypothetical protein VITISV_022639 [Viti 0.929 0.542 0.805 0.0
357513165 666 Fimbrin [Medicago truncatula] gi|3555208 0.929 0.531 0.775 0.0
356504430 666 PREDICTED: fimbrin-like protein 2-like [ 0.929 0.531 0.781 1e-179
356527290 665 PREDICTED: fimbrin-like protein 2-like [ 0.929 0.532 0.768 1e-179
449465292 666 PREDICTED: fimbrin-like protein 2-like [ 0.929 0.531 0.768 1e-179
449512999 666 PREDICTED: LOW QUALITY PROTEIN: fimbrin- 0.929 0.531 0.768 1e-178
357505051 663 Fimbrin [Medicago truncatula] gi|3554978 0.929 0.533 0.769 1e-177
>gi|224065468|ref|XP_002301825.1| predicted protein [Populus trichocarpa] gi|222843551|gb|EEE81098.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/406 (80%), Positives = 343/406 (84%), Gaps = 52/406 (12%)

Query: 1   KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
           KLINVAV GTIDERAINTKR+LNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL
Sbjct: 168 KLINVAVAGTIDERAINTKRILNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 227

Query: 61  VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
           VLG+ISQIIKIQLLADLNLKKTPQLL+LVDDSKDVEELMSLPPEKILLRWMNF LKKAGY
Sbjct: 228 VLGMISQIIKIQLLADLNLKKTPQLLELVDDSKDVEELMSLPPEKILLRWMNFLLKKAGY 287

Query: 121 KKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLT 180
           KKIVTNFSSD+KD EAYA+LLNVLAPE+SNPSTL VK+PL RAKL+LEHADRMGC+RYLT
Sbjct: 288 KKIVTNFSSDVKDAEAYAHLLNVLAPEYSNPSTLTVKDPLTRAKLVLEHADRMGCKRYLT 347

Query: 181 AKDIVEGSPNLNLAFVAHIFQHR------------------------------------- 203
           AKDIVEGSPNLNLAFVAHIFQHR                                     
Sbjct: 348 AKDIVEGSPNLNLAFVAHIFQHRNGLSTQTKQISFLETLPDDTQISREERAFRFWMNSLG 407

Query: 204 ---------------WVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQL 248
                          W+LLETLDK+SPGIVNWK+ANKPPIKLPFRKVENCNQVVKIGKQL
Sbjct: 408 NSTYIDNVFEDLRNGWLLLETLDKVSPGIVNWKVANKPPIKLPFRKVENCNQVVKIGKQL 467

Query: 249 KFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAK 308
           KFSLVNIAGNDIVQGNKKLILA LWQ+MRYN+LQLLKNLRFHSHGKEITDADILQWAN K
Sbjct: 468 KFSLVNIAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHSHGKEITDADILQWANTK 527

Query: 309 VRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVT 354
           V  SG+QS M SFKDKSL+DGIFFLELLSAVQPRAVNWSLVTKGVT
Sbjct: 528 VSNSGTQSRMKSFKDKSLSDGIFFLELLSAVQPRAVNWSLVTKGVT 573

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359497563|ref|XP_002263475.2| PREDICTED: fimbrin-1-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572648|ref|XP_002527257.1| fimbrin, putative [Ricinus communis] gi|223533350|gb|EEF35101.1| fimbrin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147840522|emb|CAN70564.1| hypothetical protein VITISV_022639 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357513165|ref|XP_003626871.1| Fimbrin [Medicago truncatula] gi|355520893|gb|AET01347.1| Fimbrin [Medicago truncatula] Back     alignment and taxonomy information
>gi|356504430|ref|XP_003520999.1| PREDICTED: fimbrin-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356527290|ref|XP_003532244.1| PREDICTED: fimbrin-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449465292|ref|XP_004150362.1| PREDICTED: fimbrin-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449512999|ref|XP_004164200.1| PREDICTED: LOW QUALITY PROTEIN: fimbrin-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357505051|ref|XP_003622814.1| Fimbrin [Medicago truncatula] gi|355497829|gb|AES79032.1| Fimbrin [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2177291 687 FIM5 "FIMBRIN5" [Arabidopsis t 0.532 0.295 0.768 2.1e-143
TAIR|locus:2166096 654 AT5G48460 [Arabidopsis thalian 0.532 0.310 0.891 1.2e-100
TAIR|locus:2116382 687 FIM1 "fimbrin 1" [Arabidopsis 0.532 0.295 0.773 2.7e-90
TAIR|locus:2173867 714 AT5G55400 [Arabidopsis thalian 0.532 0.284 0.748 2.7e-88
TAIR|locus:2049158 652 AT2G04750 "AT2G04750" [Arabido 0.532 0.311 0.748 7.2e-86
POMBASE|SPBC1778.06c614 fim1 "fimbrin" [Schizosaccharo 0.524 0.325 0.470 2.8e-80
SGD|S000002536642 SAC6 "Fimbrin, actin-bundling 0.524 0.311 0.482 3.2e-79
MGI|MGI:104809630 Pls1 "plastin 1 (I-isoform)" [ 0.519 0.314 0.521 8.4e-79
UNIPROTKB|G4MKI5650 MGG_04478 "Fimbrin" [Magnaport 0.522 0.306 0.5 1.4e-78
RGD|1307142630 Pls1 "plastin 1" [Rattus norve 0.519 0.314 0.511 1.5e-77
TAIR|locus:2177291 FIM5 "FIMBRIN5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 806 (288.8 bits), Expect = 2.1e-143, Sum P(2) = 2.1e-143
 Identities = 156/203 (76%), Positives = 175/203 (86%)

Query:     1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
             KLINVAVPGTIDERAINTK+ LNPWERNEN TL LNSAKAIGCTVVNIGTQD  EGR +L
Sbjct:   167 KLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGCTVVNIGTQDIAEGRPYL 226

Query:    61 VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
             VLG+ISQIIKIQ+LADLN KKTP L QLVDD++D EELM L PEK+LL+WMNFHLKKAGY
Sbjct:   227 VLGLISQIIKIQMLADLNFKKTPSLFQLVDDTQDAEELMGLAPEKVLLKWMNFHLKKAGY 286

Query:   121 KKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLT 180
             +K VTNFSSD+KDGEAYA LLN LAPEHS    L  K+P +RAK +LE A+++ C+RYL+
Sbjct:   287 EKQVTNFSSDLKDGEAYAYLLNALAPEHSTHVALETKDPTERAKKVLEQAEKLDCKRYLS 346

Query:   181 AKDIVEGSPNLNLAFVAHIFQHR 203
              KDIV+GS NLNLAFVA IFQHR
Sbjct:   347 PKDIVDGSANLNLAFVAQIFQHR 369
GO:0003779 "actin binding" evidence=IEA
GO:0009846 "pollen germination" evidence=IMP
GO:0009860 "pollen tube growth" evidence=IMP
GO:0030036 "actin cytoskeleton organization" evidence=IMP
GO:0051015 "actin filament binding" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0030048 "actin filament-based movement" evidence=RCA
GO:0051645 "Golgi localization" evidence=RCA
GO:0051646 "mitochondrion localization" evidence=RCA
GO:0060151 "peroxisome localization" evidence=RCA
TAIR|locus:2166096 AT5G48460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116382 FIM1 "fimbrin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173867 AT5G55400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049158 AT2G04750 "AT2G04750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC1778.06c fim1 "fimbrin" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000002536 SAC6 "Fimbrin, actin-bundling protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:104809 Pls1 "plastin 1 (I-isoform)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G4MKI5 MGG_04478 "Fimbrin" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
RGD|1307142 Pls1 "plastin 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00002565
hypothetical protein (661 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
COG5069612 COG5069, SAC6, Ca2+-binding actin-bundling protein 5e-42
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 5e-19
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 4e-17
smart00033101 smart00033, CH, Calponin homology domain 3e-15
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 4e-11
smart00033101 smart00033, CH, Calponin homology domain 6e-10
smart00033101 smart00033, CH, Calponin homology domain 4e-09
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 3e-08
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 3e-07
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 3e-05
smart00033101 smart00033, CH, Calponin homology domain 0.002
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information 
 Score =  155 bits (392), Expect = 5e-42
 Identities = 115/417 (27%), Positives = 178/417 (42%), Gaps = 80/417 (19%)

Query: 1   KLINVAVPGTIDERAINTKR---LLNPWERNENHTLCLNSAKAIG-CTVVNIGTQDFIEG 56
            LI+ + P T+D   ++ ++    LN ++  EN    +  A+ IG   +VN+   D    
Sbjct: 162 ALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIARLIGVEDIVNVSIPD---E 218

Query: 57  RRHLVLGVISQIIKIQLLA--DLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFH 114
           R  +   V   II+  LL   D+ L +  +LL+  +        + LP E ILLR +N  
Sbjct: 219 RSIMTY-VSWYIIRFGLLEKIDIALHRVYRLLEADETLIQ----LRLPYEIILLRLLNLI 273

Query: 115 LKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMG 174
             K    K V NFS D+ DGE Y +LLN L    S  + L   +    A  IL++A++  
Sbjct: 274 HLKQANWK-VVNFSKDVSDGENYTDLLNQLNALCSR-APLETTDLHSLAGQILQNAEKYD 331

Query: 175 CRRYLTAKDIVEGSPNLNLAFVAHIFQHR------------------------------W 204
           CR+YL       G+P L+LAFVAH+F                                 W
Sbjct: 332 CRKYLPPA----GNPKLDLAFVAHLFNTHPGQEPLEEEEKPEIEEFDAEGEFEARVFTFW 387

Query: 205 VLLETLD----------------------KLSPGIVNWKIANKPPIK----LPFRKVENC 238
           +    +                       KL P  V  K+  K P        F+  EN 
Sbjct: 388 LNSLDVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENE 447

Query: 239 NQVVKIGKQLKFSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITD 298
           N  V +G    FSLV I G +I+ G  +L L L+WQ++R N       L+    G  ++D
Sbjct: 448 NYAVDLGITEGFSLVGIKGLEILDGI-RLKLTLVWQVLRSNTALFNHVLK--KDGCGLSD 504

Query: 299 ADILQWANAKVRISGSQSHMNSFKDKSLA-DGIFFLELLSAVQPRAVNWSLVTKGVT 354
           +D+  W  +       +  + SF D + +  G+F+L++L  +    V++ LVT+G T
Sbjct: 505 SDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSELVDYDLVTRGFT 561

Length = 612
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
KOG0046627 consensus Ca2+-binding actin-bundling protein (fim 100.0
COG5069612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 100.0
KOG0517 2473 consensus Beta-spectrin [Cytoskeleton] 100.0
KOG0517 2473 consensus Beta-spectrin [Cytoskeleton] 100.0
KOG0046627 consensus Ca2+-binding actin-bundling protein (fim 99.97
COG5069 612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 99.95
KOG0035 890 consensus Ca2+-binding actin-bundling protein (act 99.93
KOG0035 890 consensus Ca2+-binding actin-bundling protein (act 99.87
smart00033103 CH Calponin homology domain. Actin binding domains 99.67
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.64
cd00014107 CH Calponin homology domain; actin-binding domain 99.6
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.05
smart00033103 CH Calponin homology domain. Actin binding domains 99.03
cd00014107 CH Calponin homology domain; actin-binding domain 98.75
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 98.33
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 98.32
KOG0518 1113 consensus Actin-binding cytoskeleton protein, fila 98.01
KOG0518 1113 consensus Actin-binding cytoskeleton protein, fila 97.93
KOG3631365 consensus Alpha-parvin and related focal adhesion 97.82
KOG3631365 consensus Alpha-parvin and related focal adhesion 96.99
KOG2046193 consensus Calponin [Cytoskeleton] 96.48
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 96.23
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 95.62
KOG2046193 consensus Calponin [Cytoskeleton] 92.2
KOG0516 1047 consensus Dystonin, GAS (Growth-arrest-specific pr 91.97
KOG0532722 consensus Leucine-rich repeat (LRR) protein, conta 89.19
COG5199178 SCP1 Calponin [Cytoskeleton] 82.52
KOG3000295 consensus Microtubule-binding protein involved in 81.59
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-98  Score=737.19  Aligned_cols=371  Identities=63%  Similarity=1.016  Sum_probs=362.0

Q ss_pred             CcccccCCCCcccccccCCCCCCchHHHhhHHHHHHHHHHcCCeEeccCCCcccCCccchhHHHHHHHHHHHHHHhcccc
Q 035967            1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLK   80 (381)
Q Consensus         1 kl~n~~~p~tid~r~in~~~~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~i~~~   80 (381)
                      ||||.+.|||||||+||+|+++++|+..||+++||++|+.+||.+||||++||.+|.||||||||||||+++++.+|+++
T Consensus       163 KlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l~lnSAkAiGc~VvNIga~Dl~eGrphLVLGLiwQiIkiglladi~l~  242 (627)
T KOG0046|consen  163 KLINLSVPDTIDERAINTKKKLNPFERNENLNLALNSAKAIGCTVVNIGAQDLAEGRPHLVLGLIWQIIKIGLLADINLK  242 (627)
T ss_pred             hhhcccCCCchhhhhhccCCcCChhhhccchhhHHhhcccccceEEecCchhhhcCCceeeHHHHHHHHHHHHhhhcccc
Confidence            89999999999999999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccCCCchhhhhhCCChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHH
Q 035967           81 KTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPL  160 (381)
Q Consensus        81 ~~p~l~~l~~~~e~~~~~~~~s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~  160 (381)
                      .+|+|.++++++|+++++++++||++||||+|+|++++|+.+.++||++|+.||.+|..|++++.|+.++...+...+..
T Consensus       243 ~~p~L~~Ll~d~e~lEelm~L~PEkiLLrW~N~HL~kag~~k~~~nFs~DikD~eaY~~LLnqlap~~~~~~~l~~~d~l  322 (627)
T KOG0046|consen  243 KNPQLVRLLEDGETLEELMRLPPEKILLRWMNYHLKKAGWKKTVTNFSSDIKDSEAYTHLLNQLAPEHCSPAPLQETDDL  322 (627)
T ss_pred             cCHHHHHHHhCCccHHHHhcCCHHHHHHHHHHHHHHhcccceehhhhhhhhccHHHHHHHHHHhccccCCccccccCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhhCCcccccccccccCCCchhHHHHHHHhhhH-------------------------------------
Q 035967          161 QRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHR-------------------------------------  203 (381)
Q Consensus       161 ~na~~a~~~Ae~Lgi~~~L~peDI~~~~~k~il~~va~lf~~~-------------------------------------  203 (381)
                      +||+.+++-|++++|.++++|.|++.|+|+++++|||++|+++                                     
T Consensus       323 ~RA~~vLq~Aekl~Cr~~ltp~dvV~G~~kLNLAFVA~lFn~~pgL~~~~~~~~~e~~~~~~~~~reer~fr~WmNSlgv  402 (627)
T KOG0046|consen  323 ERAELVLQQAEKLDCRRYLTPTDVVAGNPKLNLAFVANLFNTHPGLEKPENEEIAEMMTEDEEESREERTFRLWMNSLGV  402 (627)
T ss_pred             hHHHHHHHHHHhcCCccccCHHHHhcCCchhhHHHHHHhcccCCCCCCccccchhcccchhHhHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999998                                     


Q ss_pred             --------------HHHHHhhcccCCCcccccccCCC--CCCCchhhhhhHHHHHHHhhhcCeeeeecCCCcccCCcchh
Q 035967          204 --------------WVLLETLDKLSPGIVNWKIANKP--PIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKL  267 (381)
Q Consensus       204 --------------~~ll~~~~ki~pg~v~w~~~~~~--p~~~~~~~~eN~n~~~~~~~~~~~~lvni~~~dI~dgn~kl  267 (381)
                                    +||+++||||.||.|+|++++||  |.++.|+++||||||++++++++|++|||+|+||+|||++|
T Consensus       403 ~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~FSLVgi~G~DI~dGNk~L  482 (627)
T KOG0046|consen  403 NPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLKFSLVGIAGQDIVDGNKTL  482 (627)
T ss_pred             cHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhcceeeeccccccccccchHh
Confidence                          89999999999999999999998  55788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCCCCcccc
Q 035967          268 ILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWS  347 (381)
Q Consensus       268 iLgLiW~li~~~~~~~~~~~~~~~~~~~~~~~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~id~~  347 (381)
                      ||||+|||||+|+++++.+++.  +|+++++++++.|+|+++...|+...|.+|.|++.+||++|++||++++|+.|||+
T Consensus       483 tLAlvWQLMR~ytL~vL~~l~~--~~~~~tD~dIv~WaN~klk~~Gk~s~IrSFkD~siS~g~~vLDLidaI~P~~Vn~~  560 (627)
T KOG0046|consen  483 TLALVWQLMRRYTLQVLKSLRS--GGKDITDSDIVNWANRKLKKAGKKSQIRSFKDKSISDGLFVLDLLDAIKPGVVNYS  560 (627)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhcCCccccccccCcccccCcchHHHHhhcCcCccchh
Confidence            9999999999999999998886  46689999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCccchhhhHHHhhhcccccc
Q 035967          348 LVTKGVTGMFSSNHTRCAVTLIGNSS  373 (381)
Q Consensus       348 ~~~~~~~~~~~~~n~~~a~~~a~~~~  373 (381)
                      .|++++|++|++.||+||+++|++=+
T Consensus       561 LV~~G~t~EdK~~NAkYaIS~ARKiG  586 (627)
T KOG0046|consen  561 LVTSGNTDEEKLLNAKYAISVARKLG  586 (627)
T ss_pred             hccCCCChhhhhhcchhhHhHHHhhC
Confidence            99999999999999999999998754

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0517 consensus Beta-spectrin [Cytoskeleton] Back     alignment and domain information
>KOG0517 consensus Beta-spectrin [Cytoskeleton] Back     alignment and domain information
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton] Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton] Back     alignment and domain information
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton] Back     alignment and domain information
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton] Back     alignment and domain information
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton] Back     alignment and domain information
>KOG2046 consensus Calponin [Cytoskeleton] Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>KOG2046 consensus Calponin [Cytoskeleton] Back     alignment and domain information
>KOG0516 consensus Dystonin, GAS (Growth-arrest-specific protein), and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>COG5199 SCP1 Calponin [Cytoskeleton] Back     alignment and domain information
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
1pxy_A506 Crystal Structure Of The Actin-Crosslinking Core Of 1e-155
1rt8_A513 Crystal Structure Of The Actin-Crosslinking Core Of 4e-82
3byh_B231 Model Of Actin-Fimbrin Abd2 Complex Length = 231 5e-59
1aoa_A275 N-Terminal Actin-Crosslinking Domain From Human Fim 3e-52
1aoa_A275 N-Terminal Actin-Crosslinking Domain From Human Fim 3e-04
1qag_A226 Actin Binding Region Of The Dystrophin Homologue Ut 9e-06
1wjo_A124 Solution Structure Of The Forth Ch Domain From Huma 1e-05
1dxx_A246 N-Terminal Actin-Binding Domain Of Human Dystrophin 5e-04
2d85_A124 Solution Structure Of The Fourth Ch Domain From Hum 5e-04
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of Arabidopsis Fimbrin Length = 506 Back     alignment and structure 
Iteration: 1

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 269/405 (66%), Positives = 314/405 (77%), Gaps = 51/405 (12%)
Query: 1   KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
           KLINVAVPGTIDERAINTKR+LNPWERNENHTLCLNSAKA+GC+VVNIGTQD  EGR HL
Sbjct: 51  KLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHL 110
Query: 61  VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
           VLG+ISQ+IKIQLLADLNLKKTPQL++L++DS DVEEL+ LPPEK+LL+WMNFHLKK GY
Sbjct: 111 VLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGY 170
Query: 121 KKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLT 180
           KK V+NFS+D+KD +AYA LLNVLAPEH +P+TL  K+PL+RA+L+L HA+RM C+RYLT
Sbjct: 171 KKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLT 230
Query: 181 AKDIVEGSPNLNLAFVAHIFQHR------------------------------------- 203
           A++IVEGS  LNLAFVA IF  R                                     
Sbjct: 231 AEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGI 290
Query: 204 --------------WVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLK 249
                         W+LLE LDK+SP  VNWK A+KPPIK+PFRKVENCNQV+KIGKQLK
Sbjct: 291 DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLK 350
Query: 250 FSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKV 309
           FSLVN+AGNDIVQGNKKLIL LLWQ+MR+++LQLLK+LR  + GKE+TDADIL WAN KV
Sbjct: 351 FSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKV 410
Query: 310 RISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVT 354
           R  G +  + SFKDKSL+ G+FFL LL AV+PR VNW+LVTKG T
Sbjct: 411 RTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGET 455
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of Schizosaccharomyces Pombe Fimbrin Length = 513 Back     alignment and structure
>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex Length = 231 Back     alignment and structure
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin Length = 275 Back     alignment and structure
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin Length = 275 Back     alignment and structure
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226 Back     alignment and structure
>pdb|1WJO|A Chain A, Solution Structure Of The Forth Ch Domain From Human Plastin 3 T-Isoform Length = 124 Back     alignment and structure
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246 Back     alignment and structure
>pdb|2D85|A Chain A, Solution Structure Of The Fourth Ch Domain From Human L- Plastin Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 1e-110
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 1e-23
1pxy_A 506 Fimbrin-like protein; calponin homology, F-actin-b 1e-18
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 4e-06
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 1e-98
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 4e-25
1rt8_A 513 Fimbrin; filamentous actin binding domain (ABD), c 8e-14
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 2e-06
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 6e-62
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 8e-16
3hoc_A272 Filamin-A; calponin homology domain, actin binding 3e-30
3hoc_A272 Filamin-A; calponin homology domain, actin binding 1e-24
3hoc_A272 Filamin-A; calponin homology domain, actin binding 3e-06
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 3e-27
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 2e-12
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 8e-06
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 2e-26
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 7e-16
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 3e-06
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 5e-23
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 4e-15
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 4e-05
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 3e-16
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 8e-10
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 1e-07
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 3e-15
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 8e-12
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 1e-05
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 4e-15
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 4e-12
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 2e-04
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 1e-11
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 2e-07
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 1e-04
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 4e-09
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 2e-08
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 3e-04
1wyl_A116 NEDD9 interacting protein with calponin homology a 1e-08
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 2e-08
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 4e-07
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 6e-08
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 8e-08
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 1e-07
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 3e-07
1bhd_A118 Utrophin; calponin homology, actin binding, struct 3e-07
2d88_A121 Protein mical-3; all alpha, calponin homology doma 6e-07
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
 Score =  331 bits (850), Expect = e-110
 Identities = 269/405 (66%), Positives = 314/405 (77%), Gaps = 51/405 (12%)

Query: 1   KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
           KLINVAVPGTIDERAINTKR+LNPWERNENHTLCLNSAKA+GC+VVNIGTQD  EGR HL
Sbjct: 51  KLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHL 110

Query: 61  VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
           VLG+ISQ+IKIQLLADLNLKKTPQL++L++DS DVEEL+ LPPEK+LL+WMNFHLKK GY
Sbjct: 111 VLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGY 170

Query: 121 KKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLT 180
           KK V+NFS+D+KD +AYA LLNVLAPEH +P+TL  K+PL+RA+L+L HA+RM C+RYLT
Sbjct: 171 KKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLT 230

Query: 181 AKDIVEGSPNLNLAFVAHIFQHR------------------------------------- 203
           A++IVEGS  LNLAFVA IF  R                                     
Sbjct: 231 AEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGI 290

Query: 204 --------------WVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLK 249
                         W+LLE LDK+SP  VNWK A+KPPIK+PFRKVENCNQV+KIGKQLK
Sbjct: 291 DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLK 350

Query: 250 FSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKV 309
           FSLVN+AGNDIVQGNKKLIL LLWQ+MR+++LQLLK+LR  + GKE+TDADIL WAN KV
Sbjct: 351 FSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKV 410

Query: 310 RISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVT 354
           R  G +  + SFKDKSL+ G+FFL LL AV+PR VNW+LVTKG T
Sbjct: 411 RTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGET 455
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275 Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245 Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Length = 124 Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Length = 124 Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Length = 124 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245 Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245 Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254 Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109 Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128 Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127 Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118 Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 100.0
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 100.0
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 100.0
3hoc_A272 Filamin-A; calponin homology domain, actin binding 100.0
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 100.0
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 100.0
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 100.0
3hoc_A272 Filamin-A; calponin homology domain, actin binding 100.0
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 100.0
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 100.0
4b7l_A 347 Filamin-B; structural protein, FR 1 filamin hinge 100.0
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 100.0
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 100.0
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 100.0
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 100.0
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 100.0
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 100.0
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 100.0
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 100.0
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 100.0
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 100.0
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 100.0
1wyl_A116 NEDD9 interacting protein with calponin homology a 99.93
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 99.93
1bhd_A118 Utrophin; calponin homology, actin binding, struct 99.93
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 99.93
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 99.93
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.92
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 99.92
2d88_A121 Protein mical-3; all alpha, calponin homology doma 99.92
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 99.91
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 99.87
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 99.84
1wyl_A116 NEDD9 interacting protein with calponin homology a 99.77
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 99.75
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.75
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 99.75
2d88_A121 Protein mical-3; all alpha, calponin homology doma 99.75
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 99.75
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 99.74
1bhd_A118 Utrophin; calponin homology, actin binding, struct 99.73
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 99.62
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 98.87
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 98.83
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 98.6
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 98.21
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 98.15
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 98.13
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 98.1
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 98.0
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 98.0
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 97.99
2qjz_A123 Microtubule-associated protein RP/EB family member 97.93
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 97.85
1ujo_A144 Transgelin; CH domain, actin binding, structural g 97.84
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 97.8
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 97.79
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 97.78
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 97.69
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 97.6
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 97.58
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 97.56
1ujo_A144 Transgelin; CH domain, actin binding, structural g 97.4
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 97.35
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 97.23
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 97.16
2qjz_A123 Microtubule-associated protein RP/EB family member 97.15
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 97.06
2r8u_A268 Microtubule-associated protein RP/EB family member 97.04
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 96.95
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 96.94
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 96.78
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 96.7
2r8u_A 268 Microtubule-associated protein RP/EB family member 94.88
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 93.7
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 93.47
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 92.92
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 91.42
1wix_A164 HOOK homolog 1, RSGI RUH-026; structural genomics, 90.79
1wix_A164 HOOK homolog 1, RSGI RUH-026; structural genomics, 87.03
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
Probab=100.00  E-value=1.1e-85  Score=680.33  Aligned_cols=369  Identities=44%  Similarity=0.812  Sum_probs=329.5

Q ss_pred             CcccccCCCCcccccccCC---CCCCchHHHhhHHHHHHHHHHcCC-eEeccCCCcccCCccchhHHHHHHHHHHHHHHh
Q 035967            1 KLINVAVPGTIDERAINTK---RLLNPWERNENHTLCLNSAKAIGC-TVVNIGTQDFIEGRRHLVLGVISQIIKIQLLAD   76 (381)
Q Consensus         1 kl~n~~~p~tid~r~in~~---~~~~r~~~~eN~~~al~~~k~~gi-~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~   76 (381)
                      ||+|...||+||+|++|++   .+.+|+|++||++.||+++++.|| +++||+++||+||++++|||||||||++|++++
T Consensus        56 ~Lie~l~~~~i~~~~i~~~~~~~~~~~~~~~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~~~liLgLiW~li~~~~l~~  135 (513)
T 1rt8_A           56 KLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGK  135 (513)
T ss_dssp             HHHHHHSTTSSCGGGSCCCC---CCCHHHHHHHHHHHHHHHHHHSSCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHcCCCcchhhcCCccccCcccHHHHHHHHHHHHHHHHHcCCCccCCcCHHhhhcCCHHHHHHHHHHHHHHhhhcc
Confidence            5789999999999999975   378999999999999999999999 999999999999999999999999999999999


Q ss_pred             cccccCcccccccCCCchhhhhhCCChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCC
Q 035967           77 LNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAV  156 (381)
Q Consensus        77 i~~~~~p~l~~l~~~~e~~~~~~~~s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~  156 (381)
                      ++++.+|++..+++++|+.+++.+.++++.||+|||++++++|+.++|+||++||+||++||+|+|++.|+.++++++.+
T Consensus       136 i~~~~~pel~~l~~~~e~~~~~~~~~~~~~LL~W~n~~l~~~g~~~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~~l~~  215 (513)
T 1rt8_A          136 IDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQT  215 (513)
T ss_dssp             C----------------CHHHHTTSCHHHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGGGC
T ss_pred             cccccCHHHHhhhccCCchhhhhcCCHHHHHHHHHHHHHHhcCCCcCcccchhhhhccHHHHHHHHHHCccccccCCCCc
Confidence            99989999999998889998899999999999999999988888789999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhHHhhCCcccccccccccCCCchhHHHHHHHhhhH---------------------------------
Q 035967          157 KNPLQRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHR---------------------------------  203 (381)
Q Consensus       157 ~d~~~na~~a~~~Ae~Lgi~~~L~peDI~~~~~k~il~~va~lf~~~---------------------------------  203 (381)
                      ++..+|++.||++|+++|||++|+||||+.++|+++|+|+++||+.+                                 
T Consensus       216 ~~~~~n~~~a~~~a~~lgi~~~l~peDi~~~~~k~il~yva~l~~~~~~~~~~~~~~~~~~~~~~~e~~~q~k~f~~WiN  295 (513)
T 1rt8_A          216 TDVLQRAEQVLQNAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFTLWLN  295 (513)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCCSCCHHHHHTTCHHHHHHHHHHHHHHCCCCCC-------------CHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCccCCHHHhcCCCHHHHHHHHHHHHhhhcccCcccchhhhhhhhhcchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999876                                 


Q ss_pred             ------------------HHHHHhhcccCCCcccccccCCCCC----CCchhhhhhHHHHHHHhhhcCeeeeecCCCccc
Q 035967          204 ------------------WVLLETLDKLSPGIVNWKIANKPPI----KLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIV  261 (381)
Q Consensus       204 ------------------~~ll~~~~ki~pg~v~w~~~~~~p~----~~~~~~~eN~n~~~~~~~~~~~~lvni~~~dI~  261 (381)
                                        .+|+++++++.||.++|++++++|.    +++++++||||+|++++++.|+++|||+++||+
T Consensus       296 ~~~~~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~~gv~lv~i~~~DIv  375 (513)
T 1rt8_A          296 SLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGADIT  375 (513)
T ss_dssp             HTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHH
T ss_pred             hcCCCCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHHHHHcCceeeccchhhhh
Confidence                              6899999999999999999998774    478999999999999999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCC
Q 035967          262 QGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQP  341 (381)
Q Consensus       262 dgn~kliLgLiW~li~~~~~~~~~~~~~~~~~~~~~~~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P  341 (381)
                      |||+|+||||+|||||+|+++.+++++.  +|+++++++||+|||++++.++++++|+||+|+||+||+|||||||+++|
T Consensus       376 dg~~~~~LgLlW~li~~~~~~~l~~l~~--~~~~~~~~~LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi~~~~P  453 (513)
T 1rt8_A          376 DGSRTLTLALVWQMMRMNITKTLHSLSR--GGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKS  453 (513)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTC--------CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHHCG
T ss_pred             cCCchhhHHHHHHHHHHHHHHHHHhhcc--CCCcCCHHHHHHHHHHHhhccCCCCCCCCCCcccccchHHHHHHHHHhCC
Confidence            9999999999999999999888766653  46788898999999999987667899999998899999999999999999


Q ss_pred             CCcccccccCCCCccchhhhHHHhhhcccc
Q 035967          342 RAVNWSLVTKGVTGMFSSNHTRCAVTLIGN  371 (381)
Q Consensus       342 ~~id~~~~~~~~~~~~~~~n~~~a~~~a~~  371 (381)
                      +++||+.+.++.+++++++|+++||++|++
T Consensus       454 ~~i~~~~l~~~~~~~~~~~n~~~af~~A~~  483 (513)
T 1rt8_A          454 EYVDYNLVTDGSTEELAIQNARLAISIARK  483 (513)
T ss_dssp             GGCCGGGCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CcCCHHhhccccChhhHHHHHHHHHHHHHH
Confidence            999999998877788999999999999975
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Back     alignment and structure
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 381
d1pxya_500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-114
d1pxya_500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 5e-22
d1pxya_ 500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 5e-21
d1pxya_500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 3e-07
d1pxya_ 500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-06
d1rt8a_505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 5e-91
d1rt8a_505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-20
d1rt8a_ 505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 3e-14
d1aoaa2116 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros 2e-29
d1aoaa2116 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros 2e-07
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-21
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-12
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-12
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-06
d1bhda_108 a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI 8e-21
d1dxxa2127 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie 2e-19
d1sh5a2110 a.40.1.1 (A:128-237) Actin binding domain of plect 3e-18
d1bkra_108 a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) 4e-16
d1aoaa1131 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros 2e-15
d1aoaa1131 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros 6e-14
d1aoaa1131 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros 7e-12
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 1e-13
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 1e-12
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 5e-07
d1sh5a1120 a.40.1.1 (A:8-127) Actin binding domain of plectin 3e-13
d1sh5a1120 a.40.1.1 (A:8-127) Actin binding domain of plectin 4e-12
d1sh5a1120 a.40.1.1 (A:8-127) Actin binding domain of plectin 1e-08
d1p2xa_159 a.40.1.1 (A:) Ras GTPase-activating-like protein r 5e-09
d1p2xa_159 a.40.1.1 (A:) Ras GTPase-activating-like protein r 2e-06
d1p2xa_159 a.40.1.1 (A:) Ras GTPase-activating-like protein r 0.001
d1ujoa_144 a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta 1e-04
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  340 bits (873), Expect = e-114
 Identities = 268/403 (66%), Positives = 313/403 (77%), Gaps = 51/403 (12%)

Query: 1   KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHL 60
           KLINVAVPGTIDERAINTKR+LNPWERNENHTLCLNSAKA+GC+VVNIGTQD  EGR HL
Sbjct: 45  KLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHL 104

Query: 61  VLGVISQIIKIQLLADLNLKKTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGY 120
           VLG+ISQ+IKIQLLADLNLKKTPQL++L++DS DVEEL+ LPPEK+LL+WMNFHLKK GY
Sbjct: 105 VLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGY 164

Query: 121 KKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPLQRAKLILEHADRMGCRRYLT 180
           KK V+NFS+D+KD +AYA LLNVLAPEH +P+TL  K+PL+RA+L+L HA+RM C+RYLT
Sbjct: 165 KKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLT 224

Query: 181 AKDIVEGSPNLNLAFVAHIFQHR------------------------------------- 203
           A++IVEGS  LNLAFVA IF  R                                     
Sbjct: 225 AEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGI 284

Query: 204 --------------WVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLK 249
                         W+LLE LDK+SP  VNWK A+KPPIK+PFRKVENCNQV+KIGKQLK
Sbjct: 285 DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLK 344

Query: 250 FSLVNIAGNDIVQGNKKLILALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKV 309
           FSLVN+AGNDIVQGNKKLIL LLWQ+MR+++LQLLK+LR  + GKE+TDADIL WAN KV
Sbjct: 345 FSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKV 404

Query: 310 RISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKG 352
           R  G +  + SFKDKSL+ G+FFL LL AV+PR VNW+LVTKG
Sbjct: 405 RTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKG 447
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 100.0
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 100.0
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 100.0
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 100.0
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 99.9
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.9
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.9
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 99.9
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.88
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.88
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.77
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 99.75
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.66
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 99.64
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.63
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.55
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.37
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 99.09
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 98.01
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 97.87
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 97.67
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 97.09
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 97.07
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 96.54
d1wixa_164 Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId 85.9
d1wixa_164 Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId 85.78
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.9e-84  Score=665.72  Aligned_cols=371  Identities=73%  Similarity=1.161  Sum_probs=332.1

Q ss_pred             CcccccCCCCcccccccCCCCCCchHHHhhHHHHHHHHHHcCCeEeccCCCcccCCccchhHHHHHHHHHHHHHHhcccc
Q 035967            1 KLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLK   80 (381)
Q Consensus         1 kl~n~~~p~tid~r~in~~~~~~r~~~~eN~~~al~~~k~~gi~lvnI~~~dI~dg~~~liLgLIWqII~~~~l~~i~~~   80 (381)
                      ||+|...|++||+|.++++++++|+|++||++.||+|+++.||++|||+++||+||++++||||+||||++|+++.++.+
T Consensus        45 ~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~~~k~~gi~lvnI~~~dIvdGn~~liLgLlW~ii~~~~i~~i~~~  124 (500)
T d1pxya_          45 KLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLK  124 (500)
T ss_dssp             HHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHHHHcCCccchhhhcCCCCccHHHHHHHHHHHHHHHHHcCCEEeccChhhhhcCCHHHHHHHHHHHHHHHHHhhhccc
Confidence            57899999999999999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccCCCchhhhhhCCChHHHHHHHHHHHhhhcCCccccccccccccchHHHHHHHHHhCCCCCCCCcCCCCCHH
Q 035967           81 KTPQLLQLVDDSKDVEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDIKDGEAYANLLNVLAPEHSNPSTLAVKNPL  160 (381)
Q Consensus        81 ~~p~l~~l~~~~e~~~~~~~~s~e~~LL~Wvn~~l~~~g~~~~I~nF~~d~~DG~~l~aLl~~~~p~~~~~~~~~~~d~~  160 (381)
                      .+|++..+.+++++.+++.++++|++||+|||+++...++..+|+||++||+||.+|++|+|++.|+.++++.+.+.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~s~~~~LL~W~n~~l~~~~~~~~v~nf~~d~~dG~~~~~Ll~~~~P~~~~~~~~~~~~~~  204 (500)
T d1pxya_         125 KTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPL  204 (500)
T ss_dssp             C-----------------CCSCHHHHHHHHHHHHHHHTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCCSHH
T ss_pred             cCcchhccccCCccchhhccCCHHHHHHHHHHHhccccCCCceeecCcCCchhHHHHHHHHHHHCCCccChhhcCcCCHH
Confidence            99999999999999999999999999999999999877777799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhhCCcccccccccccCCCchhHHHHHHHhhhH-------------------------------------
Q 035967          161 QRAKLILEHADRMGCRRYLTAKDIVEGSPNLNLAFVAHIFQHR-------------------------------------  203 (381)
Q Consensus       161 ~na~~a~~~Ae~Lgi~~~L~peDI~~~~~k~il~~va~lf~~~-------------------------------------  203 (381)
                      +|++.||+.|+++|||++++|+||++++++++|+|+++||+++                                     
T Consensus       205 ~~~~~a~~~a~~lgip~~l~peDI~~~~~k~~l~~va~lf~~~p~~~~~~~~~~~~~~~e~~~~~~~~ktf~~WiNs~~~  284 (500)
T d1pxya_         205 ERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGI  284 (500)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHHHCCCCC-------------CCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHhcCCcHHHHHHHHHHHHHhccccccccchhhhhhhhhhhhhhhhHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999998                                     


Q ss_pred             --------------HHHHHhhcccCCCcccccccCCCCCCCchhhhhhHHHHHHHhhhcCeeeeecCCCcccCCcchhHH
Q 035967          204 --------------WVLLETLDKLSPGIVNWKIANKPPIKLPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLIL  269 (381)
Q Consensus       204 --------------~~ll~~~~ki~pg~v~w~~~~~~p~~~~~~~~eN~n~~~~~~~~~~~~lvni~~~dI~dgn~kliL  269 (381)
                                    .+|+++++++.++.++|+++++||.+.+++++|||++|++++++.|++++||+|+||+|||.|+||
T Consensus       285 ~~~V~dL~~dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~ki~N~~~al~~~~~~gi~l~~I~~~DI~dG~~k~iL  364 (500)
T d1pxya_         285 DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLIL  364 (500)
T ss_dssp             SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTTCCCCSCCHHHHHTTCHHHHH
T ss_pred             CCCcchHHHHHhhhHHHHHHHHHhcCCCCChhhcCCCcccchHHHHHHHHHHHHHHHHcCCccCCCChHHhhccchhhHH
Confidence                          579999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCCCCHHHHHHHHHhhhccCCCccccCCCCCCCccchhHHHHHHHhhCCCCcccccc
Q 035967          270 ALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLV  349 (381)
Q Consensus       270 gLiW~li~~~~~~~~~~~~~~~~~~~~~~~~lL~W~~~~~~~~~~~~~i~nF~d~sw~dG~~~~aLi~~~~P~~id~~~~  349 (381)
                      ||+||||++|+++.+........+...+++.||+|||++++.|+++++|+||+|+||+||+|||+|||+++|++|||+.+
T Consensus       365 gLlW~Li~~~~i~~~~~~~~~~~~~~~~~~~LL~W~~~~~~~~~~~~~I~nF~~~s~~dG~a~~~Li~~~~P~~id~~~~  444 (500)
T d1pxya_         365 GLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLV  444 (500)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHhcCCCCccCcCCCCCccccHHHHHHHHhhCCCccCHhhc
Confidence            99999999999988765543222344567889999999999998889999998689999999999999999999999999


Q ss_pred             cCCCCccchhhhHHHhhhcccc
Q 035967          350 TKGVTGMFSSNHTRCAVTLIGN  371 (381)
Q Consensus       350 ~~~~~~~~~~~n~~~a~~~a~~  371 (381)
                      .++.+.+++..|++|||++|++
T Consensus       445 ~~~~~~~~~~~N~~~a~~~a~~  466 (500)
T d1pxya_         445 TKGETDDEKRLNATYIVSVARK  466 (500)
T ss_dssp             CCSCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHH
Confidence            9887778889999999999875
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure