Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 112
pfam00403 62
pfam00403, HMA, Heavy-metal-associated domain
1e-07 PLN02957 238
PLN02957, PLN02957, copper, zinc superoxide dismut
3e-04 cd00371 63
cd00371, HMA, Heavy-metal-associated domain (HMA)
0.003
>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain
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Score = 44.5 bits (106), Expect = 1e-07
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRK 62
C C +KV K ++KL G++S+ +D VTV GD DP+K+ K + K
Sbjct: 9 CAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEK 58
>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase
Back Show alignment and domain information
Score = 38.2 bits (89), Expect = 3e-04
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 9 VKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIES 68
V + C C V + LEG+ ++ +D S V V+G + PVK + +AA+E
Sbjct: 12 VDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLG-SSPVKAM--------TAALEQ 62
Query: 69 IG 70
G
Sbjct: 63 TG 64
>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones
Back Show alignment and domain information
Score = 33.3 bits (77), Expect = 0.003
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDA--DPVKIIKKVREFRKSAA 65
C C K+ K + KL G+ S+ +D TV D P ++++ + + A
Sbjct: 9 CAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGYKAR 63
HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
112
PF00403 62
HMA: Heavy-metal-associated domain; InterPro: IPR0
99.6 COG2608 71
CopZ Copper chaperone [Inorganic ion transport and
99.55 KOG1603 73
consensus Copper chaperone [Inorganic ion transpor
99.48 KOG4656 247
consensus Copper chaperone for superoxide dismutas
99.18 PRK10671 834
copA copper exporting ATPase; Provisional
98.83 PLN02957 238
copper, zinc superoxide dismutase
98.76 COG2217 713
ZntA Cation transport ATPase [Inorganic ion transp
98.42 TIGR00003 68
copper ion binding protein. This model describes a
98.21 KOG0207 951
consensus Cation transport ATPase [Inorganic ion t
97.74 KOG0207 951
consensus Cation transport ATPase [Inorganic ion t
97.71 PRK10671 834
copA copper exporting ATPase; Provisional
97.68 PRK11033 741
zntA zinc/cadmium/mercury/lead-transporting ATPase
97.3 COG1888 97
Uncharacterized protein conserved in archaea [Func
93.83 TIGR02052 92
MerP mercuric transport protein periplasmic compon
93.7 PF02680 95
DUF211: Uncharacterized ArCR, COG1888; InterPro: I
93.37 PRK14054 172
methionine sulfoxide reductase A; Provisional
92.89 PRK13748 561
putative mercuric reductase; Provisional
91.2 PF01206 70
TusA: Sulfurtransferase TusA; InterPro: IPR001455
91.0 cd00371 63
HMA Heavy-metal-associated domain (HMA) is a conse
88.77 PRK11018 78
hypothetical protein; Provisional
87.4 PRK05528 156
methionine sulfoxide reductase A; Provisional
87.32 PF13732 84
DUF4162: Domain of unknown function (DUF4162)
87.31 PRK10553 87
assembly protein for periplasmic nitrate reductase
84.82 COG0225 174
MsrA Peptide methionine sulfoxide reductase [Postt
84.41 PRK00058 213
methionine sulfoxide reductase A; Provisional
84.14 PRK13014 186
methionine sulfoxide reductase A; Provisional
83.56 cd03421 67
SirA_like_N SirA_like_N, a protein of unknown func
83.26 PF01883 72
DUF59: Domain of unknown function DUF59; InterPro:
82.32 PF03927 79
NapD: NapD protein; InterPro: IPR005623 This entry
80.78
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures
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Probab=99.60 E-value=8.3e-15 Score=86.91 Aligned_cols=57 Identities=33% Similarity=0.476 Sum_probs=53.1
Q ss_pred Eee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCc
Q 035968 7 VSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKS 63 (112)
Q Consensus 7 ~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~ 63 (112)
|.+ ||+|++|+++|+++|.+++||.++.+|+.+++++|.++ .++++|.++|+++||+
T Consensus 2 ~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 2 FKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred EEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 566 99999999999999999999999999999999999987 4569999999999984
These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.55 E-value=6.3e-14 Score=86.03 Aligned_cols=67 Identities=27% Similarity=0.362 Sum_probs=57.4
Q ss_pred CceeEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEe
Q 035968 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 1 m~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~ 67 (112)
||+..+...||+|++|+.+|+++|.+++||.++++|+..+++.|..+ ++.++|..+|.++||.+..+
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 55544444499999999999999999999999999999988777754 69999999999999988653
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.48 E-value=4.3e-13 Score=82.63 Aligned_cols=66 Identities=38% Similarity=0.651 Sum_probs=60.7
Q ss_pred ceeEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcC-CceEEe
Q 035968 2 AKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFR-KSAAIE 67 (112)
Q Consensus 2 ~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G-~~~~~~ 67 (112)
++..+++++|+|.+|..+|++.|+.++||.++++|..+++++|.|++++..|++.|++.| .+..++
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 456788899999999999999999999999999999999999999999999999999987 666554
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.18 E-value=1.1e-10 Score=84.49 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=65.9
Q ss_pred eEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEecCCCCc
Q 035968 4 KTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESIGPPK 73 (112)
Q Consensus 4 ~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~~~~~~ 73 (112)
++.|.+.|+|++|++.|++.|..++||.+|++|++.+.|.|.+...+.+|...|+.+|+++.+...+-++
T Consensus 8 ~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~ps 77 (247)
T KOG4656|consen 8 EAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKPS 77 (247)
T ss_pred eEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCchh
Confidence 4688999999999999999999999999999999999999999999999999999999999998876654
>PRK10671 copA copper exporting ATPase; Provisional
Back Show alignment and domain information
Probab=98.83 E-value=1.4e-08 Score=86.27 Aligned_cols=66 Identities=15% Similarity=0.315 Sum_probs=59.5
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEec
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~ 68 (112)
||+++.+.+ ||+|++|+.+|+++|++++||..+.+|+. +.+|.+..+.+.+...+++.||.+.+.+
T Consensus 1 ~~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 1 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred CCeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 788888998 99999999999999999999999999994 5566677889999999999999998764
>PLN02957 copper, zinc superoxide dismutase
Back Show alignment and domain information
Probab=98.76 E-value=1.1e-07 Score=70.51 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=62.8
Q ss_pred eEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEecCCCCc
Q 035968 4 KTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESIGPPK 73 (112)
Q Consensus 4 ~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~~~~~~ 73 (112)
++.+.++|+|..|+.+|+++|.+++||.++.+|+..++++|.+..+...+...+++.||.++++...+.+
T Consensus 7 ~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~ 76 (238)
T PLN02957 7 LTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPE 76 (238)
T ss_pred EEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCcc
Confidence 4567779999999999999999999999999999999999998788899999999999999888765543
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=98.42 E-value=9.6e-07 Score=74.28 Aligned_cols=62 Identities=27% Similarity=0.484 Sum_probs=55.8
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CC-HHHHHHHHHhcCCceEE
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---AD-PVKIIKKVREFRKSAAI 66 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~-~~~i~~~i~k~G~~~~~ 66 (112)
+..+.+ ||+|..|+++|+ +|++++||..+.+|+.++++.|.++ .+ .+.+...+++.||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 455676 999999999999 9999999999999999999999865 45 78999999999998876
>TIGR00003 copper ion binding protein
Back Show alignment and domain information
Probab=98.21 E-value=3e-05 Score=42.82 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=51.5
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCce
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSA 64 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~ 64 (112)
||+. .+.+ +++|..|...+++.+...+++....+++..+.+.+..+ .+...+...+...|+.+
T Consensus 1 ~~~~-~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 1 KQKF-TVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred CcEE-EEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 5654 4566 99999999999999999999999999999999888753 46677777777777753
This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=97.74 E-value=7.8e-05 Score=63.87 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=59.4
Q ss_pred ecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEecCCCCc
Q 035968 9 VKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIESIGPPK 73 (112)
Q Consensus 9 vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~~~~~~~ 73 (112)
.||+|..|.+.|++++...+||.++.+++.+++.+|.++ .+++.|.+.++..||++.+.+.....
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~~~~~ 67 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSDSEIT 67 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeecccCccc
Confidence 389999999999999999999999999999999999876 79999999999999999998765543
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=97.71 E-value=0.00014 Score=62.45 Aligned_cols=68 Identities=26% Similarity=0.512 Sum_probs=60.9
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecCC
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESIG 70 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~~ 70 (112)
++++|.+ ||.|.+|..+|++.|.+++||.++.++..++++.|..+ ..+-++.+.|+..|+.+......
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~~ 217 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPYG 217 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeecc
Confidence 3567787 99999999999999999999999999999999999875 68899999999999988776543
>PRK10671 copA copper exporting ATPase; Provisional
Back Show alignment and domain information
Probab=97.68 E-value=0.00021 Score=61.10 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=55.9
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEec
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~ 68 (112)
+.+.+ ||+|.+|+.+|++.|..++||.++.+++.++++.+.+..++..+.+.+.+.||.+.+..
T Consensus 101 ~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~~ 165 (834)
T PRK10671 101 QQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIE 165 (834)
T ss_pred EEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCccccc
Confidence 34656 99999999999999999999999999999999888766788889899999999876543
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Back Show alignment and domain information
Probab=97.30 E-value=0.0013 Score=55.86 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=52.5
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeC-CHHHHHHHHHhcCCceEEe
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDA-DPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~-~~~~i~~~i~k~G~~~~~~ 67 (112)
+..+.+ ||+|.+|+.++++.+...+||.++.+++.++++.+..+. ..+.+...++..||.+...
T Consensus 54 r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~ 119 (741)
T PRK11033 54 RYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE 119 (741)
T ss_pred eEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence 345666 999999999999999999999999999999998887541 2267778888899977543
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Back Show alignment and domain information
Probab=93.83 E-value=0.34 Score=31.11 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHHHHHccCCccEEEE-----ec--CCCEEEEEee-CCHHHHHHHHHhcCCceEEe
Q 035968 19 KVMKLIAKLEGITSIVI-----DP--SKNTVTVIGD-ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 19 kI~k~L~~~~GV~~v~v-----d~--~~~~v~V~~~-~~~~~i~~~i~k~G~~~~~~ 67 (112)
-+-+.|.+++||..|.+ |. .+=+++|.|+ ++.++|.+.|++.|.-.+.+
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 34456788888876543 33 3445567775 89999999999999877765
>TIGR02052 MerP mercuric transport protein periplasmic component
Back Show alignment and domain information
Probab=93.70 E-value=0.83 Score=26.99 Aligned_cols=61 Identities=13% Similarity=0.285 Sum_probs=45.5
Q ss_pred EEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEE
Q 035968 6 IVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 6 ~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~ 66 (112)
.+.+ ++.|..|...++..+...+|+....++.......+... .+...+...+...|+..++
T Consensus 26 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 26 TLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 3445 89999999999999999999888888888877666521 3555565666677776543
This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function
Back Show alignment and domain information
Probab=93.37 E-value=0.26 Score=31.79 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=35.2
Q ss_pred HHHHHHHHccCCccEEEE-----ecCCCEE--EEEee-CCHHHHHHHHHhcCCceEEe
Q 035968 18 QKVMKLIAKLEGITSIVI-----DPSKNTV--TVIGD-ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 18 ~kI~k~L~~~~GV~~v~v-----d~~~~~v--~V~~~-~~~~~i~~~i~k~G~~~~~~ 67 (112)
-.+-++|.+++||..|.+ |..+..+ +|+|+ ++.+.|.++|++.|.-++.+
T Consensus 20 ~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI 77 (95)
T PF02680_consen 20 VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI 77 (95)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence 355678999999887654 3444444 45676 89999999999999877665
; PDB: 3BPD_I 2RAQ_F 2X3D_E.
>PRK14054 methionine sulfoxide reductase A; Provisional
Back Show alignment and domain information
Probab=92.89 E-value=0.43 Score=33.94 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=42.1
Q ss_pred ceeEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCE-------------------EEEEee---CCHHHHHHHHHh
Q 035968 2 AKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNT-------------------VTVIGD---ADPVKIIKKVRE 59 (112)
Q Consensus 2 ~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~-------------------v~V~~~---~~~~~i~~~i~k 59 (112)
|++++|- +||-+-++..+.+++||.++.+-..++. |.|..| ++.++|++...+
T Consensus 3 ~~~a~fa-----gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~ 77 (172)
T PRK14054 3 METAVLA-----GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQ 77 (172)
T ss_pred ceEEEEE-----cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 4555555 7888889999999999999998876665 667765 688888887765
Q ss_pred c
Q 035968 60 F 60 (112)
Q Consensus 60 ~ 60 (112)
.
T Consensus 78 ~ 78 (172)
T PRK14054 78 I 78 (172)
T ss_pred h
Confidence 4
>PRK13748 putative mercuric reductase; Provisional
Back Show alignment and domain information
Probab=91.20 E-value=1.9 Score=35.16 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=48.5
Q ss_pred ecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEecC
Q 035968 9 VKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 9 vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
.+++|.+|..+++..+...+|+....+++..+.+.+... .+...+...+...|+..++...
T Consensus 7 ~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 7 TGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred CCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence 399999999999999999999998899988888777642 4556666677778887665544
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase
Back Show alignment and domain information
Probab=91.00 E-value=1.5 Score=25.75 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=37.7
Q ss_pred Eee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 7 VSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 7 ~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
+.. |+.|+...-+++++|.+++.- +.+.|..+ ....+|...+++.|+...-+
T Consensus 3 lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 3 LDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 444 999999999999999987532 44444443 55688999999999975443
This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones
Back Show alignment and domain information
Probab=88.77 E-value=1.7 Score=20.95 Aligned_cols=53 Identities=25% Similarity=0.462 Sum_probs=36.8
Q ss_pred ecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcC
Q 035968 9 VKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFR 61 (112)
Q Consensus 9 vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G 61 (112)
.++.|..|...++..+...+|+.....++......+... .+...+...+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (63)
T cd00371 5 EGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAG 59 (63)
T ss_pred CCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcC
Confidence 378899999999999988899877777777666666543 24444444444444
HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
>PRK11018 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=87.40 E-value=4.8 Score=24.57 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=38.9
Q ss_pred EEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEE
Q 035968 6 IVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 6 ~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~ 66 (112)
.+.. |+.|+.-.-+.+++|.+++.- +.+.|..+ .....|...+++.|+.+..
T Consensus 10 ~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 10 RLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSINNIPLDARNHGYTVLD 64 (78)
T ss_pred eEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 4555 999999999999999987632 33333332 5667899999999998754
>PRK05528 methionine sulfoxide reductase A; Provisional
Back Show alignment and domain information
Probab=87.32 E-value=2.9 Score=29.30 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCCE--------------EEEEee---CCHHHHHHHHHh
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKNT--------------VTVIGD---ADPVKIIKKVRE 59 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~~--------------v~V~~~---~~~~~i~~~i~k 59 (112)
+||-+-++..+.+++||.++.+-..++. |.|..| ++.++|++...+
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 6888889999999999999988765433 445655 688888887765
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Back Show alignment and domain information
Probab=87.31 E-value=3 Score=25.18 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=34.3
Q ss_pred HHccCCccEEEEecCCCEEE--EEeeCCHHHHHHHHHhcCCceEEecCCCC
Q 035968 24 IAKLEGITSIVIDPSKNTVT--VIGDADPVKIIKKVREFRKSAAIESIGPP 72 (112)
Q Consensus 24 L~~~~GV~~v~vd~~~~~v~--V~~~~~~~~i~~~i~k~G~~~~~~~~~~~ 72 (112)
|..++||.++..+ ..+.+. +....+..+|+..|...|. +.-++...|
T Consensus 26 l~~~~~v~~v~~~-~~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~~~P 74 (84)
T PF13732_consen 26 LEELPGVESVEQD-GDGKLRIKLEDEETANELLQELIEKGI-IRSFEEEEP 74 (84)
T ss_pred HhhCCCeEEEEEe-CCcEEEEEECCcccHHHHHHHHHhCCC-eeEEEEcCC
Confidence 8888999988764 345444 4455788999999999998 766655443
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Back Show alignment and domain information
Probab=84.82 E-value=6 Score=25.00 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHccCCccEEEEecCCCEEEEEee-CCHHHHHHHHHhc
Q 035968 15 KCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD-ADPVKIIKKVREF 60 (112)
Q Consensus 15 ~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~k~ 60 (112)
.=...+.+.|.+++|++-...|..+||+.|+-. .+...+.+.|..+
T Consensus 17 e~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~~I 63 (87)
T PRK10553 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESV 63 (87)
T ss_pred HHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHHHH
Confidence 336789999999999986666677888887633 4445555555543
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=84.41 E-value=3.8 Score=29.29 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=40.0
Q ss_pred ceeEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCE-------------------EEEEee---CCHHHHHHHHHh
Q 035968 2 AKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNT-------------------VTVIGD---ADPVKIIKKVRE 59 (112)
Q Consensus 2 ~~~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~-------------------v~V~~~---~~~~~i~~~i~k 59 (112)
|++++|- +||=+=+++.+.+++||.++.+-..+|. |.|.+| ++.++|++.+.+
T Consensus 6 ~~~a~fa-----gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ 80 (174)
T COG0225 6 MEKAYFA-----GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFE 80 (174)
T ss_pred cEEEEEe-----ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhe
Confidence 4555555 6788888999999999999988766553 345554 677888888876
Q ss_pred c
Q 035968 60 F 60 (112)
Q Consensus 60 ~ 60 (112)
.
T Consensus 81 i 81 (174)
T COG0225 81 I 81 (174)
T ss_pred e
Confidence 5
>PRK00058 methionine sulfoxide reductase A; Provisional
Back Show alignment and domain information
Probab=84.14 E-value=4.1 Score=29.97 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCCE-------------------EEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKNT-------------------VTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~~-------------------v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-+.++. |.|++| ++.++|++.+.+.
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~ 120 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWEN 120 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHh
Confidence 6888889999999999999998876442 556665 6888888877653
>PRK13014 methionine sulfoxide reductase A; Provisional
Back Show alignment and domain information
Probab=83.56 E-value=2.9 Score=30.09 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCCE-------------------EEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKNT-------------------VTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~~-------------------v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-..++. |.|..| ++.++|++...+.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~ 83 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFST 83 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 6778888889999999999998876664 556665 6888888877653
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain
Back Show alignment and domain information
Probab=83.26 E-value=6.9 Score=22.77 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=35.2
Q ss_pred cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 10 KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 10 gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
|+.|+.-.-+++++| ++.. ++.+.|..+ .....|...+++.|+.....
T Consensus 6 G~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~ 55 (67)
T cd03421 6 GLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGYEVSVE 55 (67)
T ss_pred CCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCCEEEEE
Confidence 899999999999999 5542 233444333 45678999999999988543
The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function
Back Show alignment and domain information
Probab=82.32 E-value=3 Score=24.68 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEeecccChhHH------HHHHHHHHccCCccEEEE
Q 035968 5 TIVSVKLLCLKCR------QKVMKLIAKLEGITSIVI 35 (112)
Q Consensus 5 ~~~~vgm~C~~C~------~kI~k~L~~~~GV~~v~v 35 (112)
+.+.+.+..++|. ..|+++|..++||.+|+|
T Consensus 36 V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 36 VSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 4455555555554 778899999999998875
The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC
Back Show alignment and domain information
Probab=80.78 E-value=11 Score=23.22 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHHHccCCccEEEEecCCCEEEEEe-eCCHHHHHHHHHhcC
Q 035968 17 RQKVMKLIAKLEGITSIVIDPSKNTVTVIG-DADPVKIIKKVREFR 61 (112)
Q Consensus 17 ~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~-~~~~~~i~~~i~k~G 61 (112)
...+.++|.+++|++-...+.. |++.|+- ..+...+.+.+..+.
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~~i~ 61 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLIDAIN 61 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHHHHH
Confidence 4678899999999975556655 8887764 356677777776654
The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 112
d1qupa2 72
d.58.17.1 (A:2-73) Copper chaperone for superoxide
9e-09 d1sb6a_ 64
d.58.17.1 (A:) Copper chaperone {Synechocystis sp.
1e-06 d1fe0a_ 66
d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX
8e-06 d1cc8a_ 72
d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX
2e-05 d2qifa1 69
d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt
6e-05 d1osda_ 72
d.58.17.1 (A:) Mercuric ion binding protein MerP {
4e-04 d1cpza_ 68
d.58.17.1 (A:) Copper chaperone {Enterococcus hira
4e-04 d1p6ta1 72
d.58.17.1 (A:1-72) Potential copper-translocating
0.002 d1oqka_ 78
b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeo
0.003 d1p6ta2 79
d.58.17.1 (A:73-151) Potential copper-translocatin
0.004
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (110), Expect = 9e-09
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 3 KKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRK 62
+ ++ + C C + + + GI S+ D + ++V P II +R K
Sbjct: 6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGK 65
Query: 63 SAAI 66
A I
Sbjct: 66 DAII 69
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]
Score = 40.7 bits (95), Expect = 1e-06
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVRE 59
C C + V K + + ++ +D + VT+ ++ +
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIAS 58
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]
Score = 38.3 bits (89), Expect = 8e-06
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 4 KTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKS 63
K SV + C C + V +++ KL G+ ID V + + ++ +++ K+
Sbjct: 2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKT 60
Query: 64 AAIESI 69
+ +
Sbjct: 61 VSYLGL 66
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.4 bits (87), Expect = 2e-05
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 3 KKTIVSVKLLCLKCRQKVMKLIAKLE-GITSIVIDPSKNTVTVIGDADPVKIIKKVRE 59
K +V + C C V K++ KLE ++ I I K V V I++K+++
Sbjct: 4 KHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKK 61
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]
Score = 36.3 bits (84), Expect = 6e-05
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 1 MAKKTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPV---KIIKKV 57
M +KT+ + C C + V + +L+G++++ ++ V V DAD V I +
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60
Query: 58 RE 59
+
Sbjct: 61 ED 62
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]
Score = 33.9 bits (78), Expect = 4e-04
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIE 67
C C V K I+K+EG++ + + V D K+ K + ++++
Sbjct: 14 CSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK 71
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]
Score = 34.0 bits (78), Expect = 4e-04
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVRE 59
C C ++ + + ++ G+ + + K V D +I + + E
Sbjct: 11 CNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINE 60
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]
Score = 32.4 bits (74), Expect = 0.002
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVRE 59
C C ++ K + ++ G+T ++ + TV VI D I +K+ +
Sbjct: 17 CAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK 66
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]
Score = 31.8 bits (72), Expect = 0.004
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 13 CLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIESIGPP 72
C C ++ K + K+EG+ + ++ + TVTV + + ++E A++ +G
Sbjct: 13 CAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEAS-VSDLKE-----AVDKLGYK 66
Query: 73 KEEKKEEKQ 81
+ K E+
Sbjct: 67 LKLKGEQDS 75
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 112
d1fe0a_ 66
ATX1 metallochaperone protein (ATOX1) {Human (Homo
99.79 d1qupa2 72
Copper chaperone for superoxide dismutase, N-termi
99.77 d1cc8a_ 72
ATX1 metallochaperone protein (ATOX1) {Baker's yea
99.76 d2aw0a_ 72
Menkes copper-transporting ATPase {Human (Homo sap
99.75 d2ggpb1 72
Copper transporter domain ccc2a {Baker's yeast (Sa
99.72 d2qifa1 69
Copper chaperone {Bacillus subtilis, CopZ [TaxId:
99.7 d1sb6a_ 64
Copper chaperone {Synechocystis sp. pcc 6803, Scat
99.7 d1osda_ 72
Mercuric ion binding protein MerP {Ralstonia metal
99.69 d1cpza_ 68
Copper chaperone {Enterococcus hirae [TaxId: 1354]
99.69 d1kvja_ 79
Menkes copper-transporting ATPase {Human (Homo sap
99.67 d1p6ta2 79
Potential copper-translocating P-type ATPase CopA
99.66 d1mwza_ 73
Metal ion-transporting ATPase ZntA, N-terminal dom
99.63 d1q8la_ 84
Menkes copper-transporting ATPase {Human (Homo sap
99.63 d1p6ta1 72
Potential copper-translocating P-type ATPase CopA
99.62 d2raqa1 93
Uncharacterized protein MTH889 {Methanobacterium t
92.39 d3bpda1 91
Uncharacterized protein AF1549 {Archaeoglobus fulg
92.15 d1dcja_ 81
SirA {Escherichia coli [TaxId: 562]}
86.69 d1jdqa_ 98
Hypothetical protein TM0983 {Thermotoga maritima [
86.6 d1je3a_ 97
hypothetical protein YedF (EC005) {Escherichia col
83.89 d1uwda_ 102
Hypothetical protein TM0487 {Thermotoga maritima [
83.58 d1fvga_ 192
Peptide methionine sulfoxide reductase {Cow (Bos t
80.93 d1ff3a_ 211
Peptide methionine sulfoxide reductase {Escherichi
80.8
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]
Probab=99.79 E-value=3.6e-19 Score=105.74 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=61.4
Q ss_pred eEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEec
Q 035968 4 KTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 4 ~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~ 68 (112)
+.+|+++|+|.+|+++|+++|++++|+ ++.+|+.+++++|+++++++.|+++|+++||++++++
T Consensus 2 k~ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~~~~~~i~~~I~~~Gy~a~lig 65 (66)
T d1fe0a_ 2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLG 65 (66)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEeeCCHHHHHHHHHHhCCeEEEee
Confidence 578999999999999999999999998 6999999999999999999999999999999999876
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=1.3e-18 Score=104.79 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=62.0
Q ss_pred eEEEeecccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEEec
Q 035968 4 KTIVSVKLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 4 ~~~~~vgm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~~~ 68 (112)
++.|.++|+|++|+++|+++|++++||.++.+|+.+++++|++++++++|+++|+++||++.+.+
T Consensus 7 ~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~G~~A~l~g 71 (72)
T d1qupa2 7 EATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRG 71 (72)
T ss_dssp EEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEEC
T ss_pred EEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHHHhCCCEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999998864
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=3.1e-18 Score=103.23 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=61.1
Q ss_pred ceeEEEeecccChhHHHHHHHHHHcc-CCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceEE
Q 035968 2 AKKTIVSVKLLCLKCRQKVMKLIAKL-EGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 2 ~~~~~~~vgm~C~~C~~kI~k~L~~~-~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~~ 66 (112)
+++..|+++|+|.+|+++|+++|.++ +||.++++|+.+++++|.+++++++|.++|+++||++.-
T Consensus 3 ~kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~ 68 (72)
T d1cc8a_ 3 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRS 68 (72)
T ss_dssp CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEE
T ss_pred cEEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeecCCHHHHHHHHHHHCCccCC
Confidence 46788999999999999999999999 599999999999999999999999999999999998864
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.5e-18 Score=102.13 Aligned_cols=67 Identities=21% Similarity=0.412 Sum_probs=63.0
Q ss_pred CceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEe
Q 035968 1 MAKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 1 m~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~ 67 (112)
|++++.|.+ ||+|++|+++|+++|.+++||.++++|+.+++++|.++ +++++|.++|+++||++.+.
T Consensus 1 mt~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~l~ 71 (72)
T d2aw0a_ 1 LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS 71 (72)
T ss_dssp CCEEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSEEEEC
T ss_pred CcEEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEeC
Confidence 889999998 99999999999999999999999999999999999864 68999999999999998763
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.6e-17 Score=99.83 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=61.8
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEec
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIES 68 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~~ 68 (112)
+++.|.+ ||+|++|+++|+++|.+++||.++++|+.+++++|.++ +++++|.++|+++||.++++.
T Consensus 2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~a~~~~ 70 (72)
T d2ggpb1 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCCeEEcc
Confidence 5788898 99999999999999999999999999999999999865 799999999999999998864
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]
Probab=99.70 E-value=6.3e-17 Score=96.33 Aligned_cols=63 Identities=16% Similarity=0.328 Sum_probs=58.2
Q ss_pred ceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCce
Q 035968 2 AKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSA 64 (112)
Q Consensus 2 ~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~ 64 (112)
|+++.|.+ ||+|++|+++|+++|++++||.++.+|+.+++++|.++ ++.++|.+.|+++||++
T Consensus 1 M~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~ 67 (69)
T d2qifa1 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred CcEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 45667888 99999999999999999999999999999999999964 78999999999999976
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]
Probab=99.70 E-value=1.5e-17 Score=97.79 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=57.9
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEeeCCHHHHHHHHHhcCCceE
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGDADPVKIIKKVREFRKSAA 65 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~k~G~~~~ 65 (112)
+.|.+ ||+|++|+++|+++|++++||.++.+|+.+++++|++++++++|.++|.++||+++
T Consensus 3 ~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~~~~~~i~~~i~~~GY~ve 64 (64)
T d1sb6a_ 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 64 (64)
T ss_dssp EEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESSSCHHHHHHHHHHHCCCCC
T ss_pred EEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccCCCHHHHHHHHHHcCCCCC
Confidence 46788 99999999999999999999999999999999999999999999999999999864
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]
Probab=99.69 E-value=9.9e-17 Score=96.24 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=60.8
Q ss_pred ceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEe
Q 035968 2 AKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 2 ~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~ 67 (112)
.+++.|.+ ||+|++|+++|+++|++++||.++++|+.++++.|+++ +++++|.++|+++||++++.
T Consensus 2 tqt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~a~v~ 71 (72)
T d1osda_ 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK 71 (72)
T ss_dssp EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred CeEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhcCCCeEeC
Confidence 35678888 99999999999999999999999999999999999964 68999999999999999864
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]
Probab=99.69 E-value=7.1e-17 Score=95.90 Aligned_cols=62 Identities=18% Similarity=0.365 Sum_probs=57.8
Q ss_pred EEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEe
Q 035968 6 IVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 6 ~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~ 67 (112)
.|.+ ||+|++|+.+|+++|++++||.++++|+.+++++|+++ +++++|.++|+++||+++++
T Consensus 3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~vi 68 (68)
T d1cpza_ 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI 68 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEEC
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEEC
Confidence 4677 99999999999999999999999999999999999964 78999999999999999874
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.6e-16 Score=95.95 Aligned_cols=68 Identities=21% Similarity=0.385 Sum_probs=62.5
Q ss_pred ceeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecC
Q 035968 2 AKKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 2 ~~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
++++.|.+ ||+|++|+++|+++|++++||.++++|+.+++++|.++ +++..|.++|+++||++.+..+
T Consensus 7 ~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~~~~~~~ 78 (79)
T d1kvja_ 7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNP 78 (79)
T ss_dssp CEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECSC
T ss_pred ceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCCcEeCCC
Confidence 46778888 99999999999999999999999999999999999965 7999999999999999988653
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]
Probab=99.66 E-value=1.8e-16 Score=96.62 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=63.5
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecCCCC
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESIGPP 72 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~~~~ 72 (112)
+++.|.+ ||+|.+|+.+|+++|..++||.++.+|+.+++++|.++ ++.++|.++|+++||++.+.+..+.
T Consensus 2 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~ 75 (79)
T d1p6ta2 2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDS 75 (79)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCSSSS
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHHHHCCceEECCcccc
Confidence 5778999 99999999999999999999999999999999999974 6899999999999999988655443
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=8.7e-16 Score=92.23 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=58.5
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee-CCHHHHHHHHHhcCCceEE
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD-ADPVKIIKKVREFRKSAAI 66 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~k~G~~~~~ 66 (112)
+++.|.+ ||+|++|+++|+++|++++||.++.+|+.+++++|.++ ...++|.++|.++||.+..
T Consensus 3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~GY~v~~ 68 (73)
T d1mwza_ 3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD 68 (73)
T ss_dssp CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCCCCB
T ss_pred CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHHHcCCcccC
Confidence 4677888 99999999999999999999999999999999999976 5678999999999998764
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6e-16 Score=95.39 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=60.5
Q ss_pred eEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCceEEecC
Q 035968 4 KTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSAAIESI 69 (112)
Q Consensus 4 ~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~~~~~~ 69 (112)
.+.|.+ ||+|.+|+++|+++|++++||.++++|+.+++++|.++ ++.+.|.++|+++||++.+...
T Consensus 10 ~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~~Gy~a~~~~~ 79 (84)
T d1q8la_ 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ 79 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHHHhCCccEEcCC
Confidence 466888 99999999999999999999999999999999999965 7899999999999999887653
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=1.1e-15 Score=91.54 Aligned_cols=62 Identities=23% Similarity=0.426 Sum_probs=57.4
Q ss_pred eeEEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee---CCHHHHHHHHHhcCCce
Q 035968 3 KKTIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD---ADPVKIIKKVREFRKSA 64 (112)
Q Consensus 3 ~~~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~k~G~~~ 64 (112)
+++.|.+ ||+|++|+.+|+++|++++||.++.+|+.+++++|..+ +++++|.++|+++||++
T Consensus 6 ~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~v 71 (72)
T d1p6ta1 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71 (72)
T ss_dssp EEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred eEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 4577888 99999999999999999999999999999999999864 68999999999999975
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.39 E-value=0.15 Score=30.28 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=38.9
Q ss_pred HHHHHHHHHHccCCccEEE-----EecCCCEEE--EEee-CCHHHHHHHHHhcCCceEEe
Q 035968 16 CRQKVMKLIAKLEGITSIV-----IDPSKNTVT--VIGD-ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 16 C~~kI~k~L~~~~GV~~v~-----vd~~~~~v~--V~~~-~~~~~i~~~i~k~G~~~~~~ 67 (112)
-.-.+-+.|.+++||..|. +|..+..+. |+|+ ++.++|.+.|++.|.-.+.+
T Consensus 18 ~i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiEG~~idyd~i~~~IE~~Gg~IHSI 77 (93)
T d2raqa1 18 IIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSV 77 (93)
T ss_dssp CHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeEEEE
Confidence 3445677899999988764 444555554 5575 89999999999999877765
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.15 E-value=0.18 Score=29.92 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=37.1
Q ss_pred HHHHHHHccCCccEEEE-----ecCCCEE--EEEee-CCHHHHHHHHHhcCCceEEe
Q 035968 19 KVMKLIAKLEGITSIVI-----DPSKNTV--TVIGD-ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 19 kI~k~L~~~~GV~~v~v-----d~~~~~v--~V~~~-~~~~~i~~~i~k~G~~~~~~ 67 (112)
.+-+.|.+++||..|.+ |..+..+ +|+|+ ++.++|.+.|++.|.-.+.+
T Consensus 21 ~~A~~l~~~~gV~~VnitV~EiD~~t~~i~ItiEG~~idyd~i~~~IE~~Gg~IHSI 77 (91)
T d3bpda1 21 VFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSV 77 (91)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeEEEE
Confidence 36778999999987654 3444444 45575 99999999999999877765
>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]
Probab=86.69 E-value=1.5 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=39.9
Q ss_pred EEEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 5 TIVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 5 ~~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
..+.. |+.|+.-.-+++++|.+++. .+.+.|..+ ....+|....++.|+....+
T Consensus 10 ~~lD~~G~~CP~P~l~~k~al~~~~~---------G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~ 66 (81)
T d1dcja_ 10 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAK 66 (81)
T ss_dssp EEECCTTCCTTHHHHHHHHHHHHCCT---------TCCEEEEECSTTHHHHHHHHHHHTTCEEEEE
T ss_pred eEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEeCCCcHHHHHHHHHHHcCCEEEEE
Confidence 34555 99999999999999998653 233444432 56788999999999977443
>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}
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class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: Hypothetical protein TM0983
species: Thermotoga maritima [TaxId: 2336]
Probab=86.60 E-value=1.9 Score=25.16 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=39.0
Q ss_pred EEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceE
Q 035968 6 IVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAA 65 (112)
Q Consensus 6 ~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~ 65 (112)
.+.. |+.|+.-.-+++++|..++. ++.+.|..+ ....+|...+++.|+...
T Consensus 28 ~LD~rG~~CP~Pll~~kkal~~l~~---------Ge~L~V~~dd~~a~~dI~~~~~~~g~~i~ 81 (98)
T d1jdqa_ 28 TLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVL 81 (98)
T ss_dssp EEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEE
T ss_pred eEECCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCcchHHHHHHHHHHcCCEEE
Confidence 4555 99999999999999998763 334444433 566789999999999873
>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: hypothetical protein YedF (EC005)
species: Escherichia coli [TaxId: 562]
Probab=83.89 E-value=1.2 Score=25.99 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=39.7
Q ss_pred EEee-cccChhHHHHHHHHHHccCCccEEEEecCCCEEEEEee--CCHHHHHHHHHhcCCceEEe
Q 035968 6 IVSV-KLLCLKCRQKVMKLIAKLEGITSIVIDPSKNTVTVIGD--ADPVKIIKKVREFRKSAAIE 67 (112)
Q Consensus 6 ~~~v-gm~C~~C~~kI~k~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~k~G~~~~~~ 67 (112)
.+.. |+.|+.-.-+++++|.+++- ++.+.|..+ ....+|...+++.||+...+
T Consensus 29 ~LD~~G~~CP~Pll~~k~~l~~l~~---------Ge~L~V~~dd~~a~~di~~~~~~~g~~v~~~ 84 (97)
T d1je3a_ 29 RLDMVGEPCPYPAVATLEAMPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI 84 (97)
T ss_dssp EECSBCCSSSSSTHHHHHHTTTCCS---------SCEEEEEEBCSSSSCHHHHHHHHHTCSEEEE
T ss_pred EEeCCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 4555 99999999999999987652 233444433 56678999999999988654
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
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class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]
Probab=83.58 E-value=0.69 Score=27.51 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=24.4
Q ss_pred EEEeecccChhH------HHHHHHHHHccCCccEEEEecC
Q 035968 5 TIVSVKLLCLKC------RQKVMKLIAKLEGITSIVIDPS 38 (112)
Q Consensus 5 ~~~~vgm~C~~C------~~kI~k~L~~~~GV~~v~vd~~ 38 (112)
+.+.+.++..+| ...++++|.+++||.+++|++.
T Consensus 43 V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~V~i~ 82 (102)
T d1uwda_ 43 VKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 82 (102)
T ss_dssp EEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred eEEEEecCCCCCchHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence 344445555555 5678889999999999988753
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.93 E-value=3 Score=27.46 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCCC-------------------EEEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSKN-------------------TVTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~~-------------------~v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-+.++ -|.|.+| ++.++|++.+.+.
T Consensus 44 gGCFWg~E~~f~~~~GV~~t~vGY~GG~~~nPtY~~Vc~g~TgH~E~V~V~yDp~~isy~~LL~~F~~~ 112 (192)
T d1fvga_ 44 MGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWEN 112 (192)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHT
T ss_pred ecccccceeeeeecCCeEEEEeeeccCCCCCCCcceeecCCCCCeeEEEEEEecccCCHHHHHHHHHhh
Confidence 678888899999999999998876543 2345665 7889999888753
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]
Probab=80.80 E-value=2 Score=28.77 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHccCCccEEEEecCC-------------------CEEEEEee---CCHHHHHHHHHhc
Q 035968 14 LKCRQKVMKLIAKLEGITSIVIDPSK-------------------NTVTVIGD---ADPVKIIKKVREF 60 (112)
Q Consensus 14 ~~C~~kI~k~L~~~~GV~~v~vd~~~-------------------~~v~V~~~---~~~~~i~~~i~k~ 60 (112)
+||-+-++..+.+++||.++.+-+.+ .-|.|++| ++.++|++...+.
T Consensus 49 gGCFWg~E~~f~~l~GV~~t~~GYaGG~~~nPtY~~VcsG~TgH~E~V~V~yDp~~isy~~Ll~~F~~~ 117 (211)
T d1ff3a_ 49 MGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWEN 117 (211)
T ss_dssp CSSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHS
T ss_pred ccchhhhhHHHhcCCCEEEEeceecCCCCCCCCccccccCCCCCceeEEEEeccccCCHHHHHHHHHHh
Confidence 67888888999999999999886542 23446665 6889999988754
