Citrus Sinensis ID: 035970
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| 255561975 | 380 | conserved hypothetical protein [Ricinus | 0.899 | 0.892 | 0.542 | 1e-95 | |
| 224144599 | 364 | predicted protein [Populus trichocarpa] | 0.877 | 0.909 | 0.541 | 1e-91 | |
| 356533653 | 373 | PREDICTED: uncharacterized protein LOC10 | 0.883 | 0.892 | 0.458 | 5e-79 | |
| 357441405 | 375 | hypothetical protein MTR_1g080360 [Medic | 0.891 | 0.896 | 0.454 | 2e-78 | |
| 224123580 | 374 | predicted protein [Populus trichocarpa] | 0.835 | 0.842 | 0.511 | 2e-77 | |
| 449477830 | 360 | PREDICTED: uncharacterized protein LOC10 | 0.848 | 0.888 | 0.432 | 1e-74 | |
| 449470322 | 360 | PREDICTED: uncharacterized protein LOC10 | 0.848 | 0.888 | 0.430 | 2e-74 | |
| 255574881 | 472 | hypothetical protein RCOM_1217340 [Ricin | 0.957 | 0.764 | 0.366 | 2e-65 | |
| 296083734 | 447 | unnamed protein product [Vitis vinifera] | 0.920 | 0.776 | 0.397 | 7e-62 | |
| 224107517 | 460 | predicted protein [Populus trichocarpa] | 0.944 | 0.773 | 0.357 | 2e-60 |
| >gi|255561975|ref|XP_002521996.1| conserved hypothetical protein [Ricinus communis] gi|223538800|gb|EEF40400.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 215/396 (54%), Positives = 265/396 (66%), Gaps = 57/396 (14%)
Query: 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
P ++LEI+++S DLA VSKSM+TY+V WV PERKLTTRVDQNG NP WNEKFVFRVDD
Sbjct: 7 PFQLLEINVISAQDLAPVSKSMRTYAVVWVHPERKLTTRVDQNGHTNPQWNEKFVFRVDD 66
Query: 64 RFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR 123
FL ETS+IMIEIYAAAWL+D IGSVRVLIS+LF + T+N +S R+VALQ+RRPSGR
Sbjct: 67 TFLNSETSSIMIEIYAAAWLRDVQIGSVRVLISNLFPSPTNN-NSKMRFVALQIRRPSGR 125
Query: 124 PQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNSKQSKDDQ 183
PQGILN+G+ LLDNTMRSMPL+ EL + F ND++ A+ SKQ+ D++
Sbjct: 126 PQGILNMGVQLLDNTMRSMPLYTELSASAVGF-------NDLID-----AKTSKQTMDEK 173
Query: 184 ELERVLKPKDNSLSKAKLRRSQSDKTDLTSEDY--SKNSSHQAQQPTGTGSVVTGSIC-- 239
K +LRR+QSD TDLT D K S+ GS+V S+
Sbjct: 174 --------------KGRLRRTQSDHTDLTLTDEFGVKGSAPPRSSVVNGGSLVNSSLVRP 219
Query: 240 ------------NGGSVVKGNGSMVNGSQCSSDVGPSASVVAAAIAKGLYKAP----TPP 283
+ + G+GSM+NGS C SDVGPSASVVAAAIAKGL K P TP
Sbjct: 220 RTSTGNEKDKNKDPCTADNGHGSMINGSLC-SDVGPSASVVAAAIAKGLIKPPGNANTPT 278
Query: 284 KTGAGGLVTEEWTAAAKESDQQEVMKSKVERWRTELPPIYDNSKMSANSKHGG--RPRRR 341
++G G + ++WT E+D E +++K+ERWRTELPPIYD++ SK RRR
Sbjct: 279 RSG-GSSIIDDWT----ENDSVEGLRTKLERWRTELPPIYDSNAKKMKSKSRRKQHHRRR 333
Query: 342 TDSGGLFSCFGNAFGCEISITCGGGNSSKKKYQNGK 377
+D+ GLF+CFGNAFGCEISITCGGG+S KKY NGK
Sbjct: 334 SDNPGLFTCFGNAFGCEISITCGGGSS--KKYGNGK 367
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144599|ref|XP_002325345.1| predicted protein [Populus trichocarpa] gi|222862220|gb|EEE99726.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 256/377 (67%), Gaps = 46/377 (12%)
Query: 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
P ++LEI+++SG DLA VSKSM+TY+VAWV P RKL+T+VDQNG NP WNEKFVFRVDD
Sbjct: 7 PFQLLEINVISGQDLAPVSKSMRTYAVAWVHPGRKLSTKVDQNGHINPQWNEKFVFRVDD 66
Query: 64 RFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR 123
F+ E S+IMIEIYAAAWL+D IGSVRVLIS+LF + +++ R+VALQVRRPSGR
Sbjct: 67 TFINAENSSIMIEIYAAAWLRDVQIGSVRVLISNLFPSNN--NNNKMRFVALQVRRPSGR 124
Query: 124 PQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNSKQSKDDQ 183
PQGILN+G+ +LD+TMRSMPL+ EL + F ND++ +T KD +
Sbjct: 125 PQGILNMGVQVLDSTMRSMPLYTELSASAVGF-------NDLINAKTN-------GKDLE 170
Query: 184 ELERVLKPKDNSLSKAKLRRSQSDKTDLTSEDYSKNSSHQAQQPTGT---GSVVTGSICN 240
E AKLRR+QSD+TD T+ D S + G+ SV S+ +
Sbjct: 171 E------------KGAKLRRTQSDRTDHTTTDESGLKEGGVRSLGGSLINSSVAKPSVKD 218
Query: 241 GGSVVKGNGSMVNGSQCSSDVGPSASVVAAAIAKGLYKAPT----PPKTGAGGLVTEEWT 296
G+ GNGSMVNGS C SDVGPSASVVAAAIAKGL K P GAG + E+WT
Sbjct: 219 NGN---GNGSMVNGSLC-SDVGPSASVVAAAIAKGLIKTPANAGQQDTDGAGSSILEDWT 274
Query: 297 AAAKESDQQEVMKSKVERWRTELPPIYDNS--KMSANSKHGGRPRRRTDSGGLFSCFGNA 354
E+D E +++K+ERWRTELPP+YDN KM + S++ + RRR++ G LFSCFGNA
Sbjct: 275 ----ENDSAEGLRTKLERWRTELPPVYDNDLRKMQSRSRN-KKHRRRSEGGRLFSCFGNA 329
Query: 355 FGCEISITCGGGNSSKK 371
FGCEISITCGG N+ K+
Sbjct: 330 FGCEISITCGGRNNKKR 346
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533653|ref|XP_003535375.1| PREDICTED: uncharacterized protein LOC100795448 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 181/395 (45%), Positives = 234/395 (59%), Gaps = 62/395 (15%)
Query: 1 MVPPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFR 60
+ P ++LE++I+S DLA VSKS+K Y+VAW++PERKLTT++D NG NNP+WNEKFVFR
Sbjct: 4 LASPFQLLELNIISAQDLAPVSKSIKAYAVAWLNPERKLTTQIDPNGQNNPTWNEKFVFR 63
Query: 61 VDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120
VDD FLT + S I+IEIYA+AWL+D LIG+V VL S+L + S R+VALQVRRP
Sbjct: 64 VDDDFLTSDESLIIIEIYASAWLRDILIGTVTVLASNLLPRSINTRKSKIRFVALQVRRP 123
Query: 121 SGRPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNSKQSK 180
SGRPQGILN+G+ L+D+TMRSMP+++EL + G DVM P+ Q ++ +
Sbjct: 124 SGRPQGILNIGVNLVDSTMRSMPMYSELSASAV-------GYWDVMDPKKPKLQQNETNN 176
Query: 181 DDQELERVLKPKDNSLSKAKLRRSQSDKTDLTSEDYSKNSSHQAQQPTGTGSVVTGSICN 240
+ D+S L+RSQS+K D T DY+ N S + G G C
Sbjct: 177 N-----------DSSCKLLTLQRSQSEKNDSTINDYAYNCSKENGYDEG------GDDCQ 219
Query: 241 GGSV-----VKGNGSMVNGSQCSSDVGPSASVVAAAIAKGLYKAP--TPPKTGAGGLVTE 293
G V KG +NGS C SDVGPS SVVAAAIAKGLY P T P+ G LV +
Sbjct: 220 GSEVGMPMAKKGVIMNMNGSLC-SDVGPSPSVVAAAIAKGLYPLPMMTAPRK-PGNLVFQ 277
Query: 294 EWTAAAKESDQQEVMKSKVERWRTELPPIYDN-SKMSANSK----------HGGRPRRRT 342
+W R L +YD+ K + N K G + R+ +
Sbjct: 278 DWPEE-----------------RGGLTAVYDHLGKNNENKKVRHVHSIPKGKGQKHRKGS 320
Query: 343 DSGGLFSCFGNAFGCEISITCGGGNSS-KKKYQNG 376
GGLFSCFG A GCE SITCGGG+ + KK+Y+ G
Sbjct: 321 SDGGLFSCFGTAMGCEFSITCGGGHGNRKKRYEGG 355
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441405|ref|XP_003590980.1| hypothetical protein MTR_1g080360 [Medicago truncatula] gi|355480028|gb|AES61231.1| hypothetical protein MTR_1g080360 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/385 (45%), Positives = 233/385 (60%), Gaps = 49/385 (12%)
Query: 1 MVPPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFR 60
+ PP ++LEI+++S DLA VSKS+K Y+VAW++PERKLTT+ D +G NNP+WNEKFVFR
Sbjct: 4 LAPPFQLLEINVISAQDLAPVSKSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFR 63
Query: 61 VDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120
VDD FL E S IMIEIYA+AWL+D LIG+V V HL L N S R+VALQVRRP
Sbjct: 64 VDDDFLLSEESVIMIEIYASAWLRDVLIGTVAV---HLNNLLPRNRKSKIRFVALQVRRP 120
Query: 121 SGRPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNSKQSK 180
SGRPQGILN+G+ ++D TMRSMP+++EL + + D+ KP +K
Sbjct: 121 SGRPQGILNIGVNVVDATMRSMPMYSELSSSAVEYY-------DITKP----------NK 163
Query: 181 DDQELERVLKPKDNSLSKAK----LRRSQSDKTDLTSEDYSKNSSHQAQQPTGTGSVVTG 236
+Q + +NS AK L+RSQS+K D T DY N + + S ++
Sbjct: 164 QNQNYD------NNSNCDAKHMMTLQRSQSEKNDSTINDYVYNPNGKNGYGGECESEISV 217
Query: 237 SICNGGSVVKGNGSMVNGSQCSSDVGPSASVVAAAIAKGLYKAPTP-PKTGAGGLVTEEW 295
G +V NGS+ SDVGPS SVVAAAIAKGLY P P+ + E+W
Sbjct: 218 PTGKKGVIVNANGSLC------SDVGPSPSVVAAAIAKGLYPLPLHVPRKTVNNSMFEKW 271
Query: 296 TAAAKESDQQEVMKSKVERWR-TELPPIYDNSKMSAN---------SKHGGRPRRRTDSG 345
++ + E++ +K++RWR ++P +YD+ + N +K G+ + R
Sbjct: 272 --PPEKDNGGEMLNTKMDRWRQIDIPQVYDHLGNNNNGSVKKTGKQTKGKGKGKNRRQGS 329
Query: 346 GLFSCFGNAFGCEISITCGGGNSSK 370
GLFSCFG A GCEISITCGGGN K
Sbjct: 330 GLFSCFGTALGCEISITCGGGNHKK 354
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123580|ref|XP_002319115.1| predicted protein [Populus trichocarpa] gi|222857491|gb|EEE95038.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 197/385 (51%), Positives = 244/385 (63%), Gaps = 70/385 (18%)
Query: 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
P ++LEI+++SG DLA VSKSM+TY++ WV P RKL+T+VDQNG NP WNEKFVFRVDD
Sbjct: 7 PFQLLEINVISGQDLAPVSKSMRTYAIVWVHPGRKLSTKVDQNGHTNPQWNEKFVFRVDD 66
Query: 64 RFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR 123
F+ E S+IMIE+YAAAWL+D IGSV VLIS+LF +HN+++ R+VALQVRRPSGR
Sbjct: 67 TFINAENSSIMIEVYAAAWLRDVQIGSVNVLISNLFP--SHNNNNKMRFVALQVRRPSGR 124
Query: 124 PQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNSKQSKDDQ 183
PQGILNLG+ LLD TMRSMPL+ EL + F +D++ +T Q
Sbjct: 125 PQGILNLGVQLLDTTMRSMPLYTELSVSAVGF-------DDLIDAKTI----------GQ 167
Query: 184 ELERVLKPKDNSLSKAKLRRSQSDKTDLTSEDYSKNSSHQAQQPTGTGSVVTGSICNGGS 243
LE AKLRR+QSD+TD T D S + +G S + GS+ N S
Sbjct: 168 SLEE---------KSAKLRRTQSDQTDQTISDKS------GIKESGVRS-LGGSLIN-SS 210
Query: 244 VVKGN--------------------GSMVNGSQCSSDVGPSASVVAAAIAKGLYKAPT-- 281
VVK + GSM+NGS C SDVGPSASVVAAAIAKGL K P
Sbjct: 211 VVKRDNGNGNGNGNGNGNGNGNGANGSMINGSLC-SDVGPSASVVAAAIAKGLIKTPANA 269
Query: 282 --PPKTGAGGLVTEEWTAAAKESDQQEVMKSKVERWRTELPPIYDNS--KMSANSKHGGR 337
GA V E+WT E+D E +++K+ERWRTELPPI+D+ KM + S+
Sbjct: 270 VQHDTDGARSSVVEDWT----ENDSIEGLRTKLERWRTELPPIHDSDLRKMQSKSRRKKH 325
Query: 338 PRRRTDSGGLFSCFGNAFGCEISIT 362
RRRT+ GGLF+CFG FGCEISIT
Sbjct: 326 -RRRTEGGGLFTCFG--FGCEISIT 347
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477830|ref|XP_004155136.1| PREDICTED: uncharacterized protein LOC101227028 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 231/395 (58%), Gaps = 75/395 (18%)
Query: 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
P +VLE+S++S +DLA VSK+M+T++VAW++P+RKLTTRVDQ GL NP+WNEKFVF+VDD
Sbjct: 5 PFQVLELSLLSANDLASVSKTMRTFAVAWINPDRKLTTRVDQVGLTNPTWNEKFVFKVDD 64
Query: 64 RFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR 123
L D TS + IEIY++A L+D LIG+V ++S+L +S S+ R++ LQVRRPSGR
Sbjct: 65 DLLEDPTSTVTIEIYSSALLRDILIGTVTEVVSNLIP--QSSSKSNMRFLTLQVRRPSGR 122
Query: 124 PQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNSKQSKDDQ 183
P+G + +G+TLLD+ RSMPL ++L + ++ D
Sbjct: 123 PKGTVKVGVTLLDSAKRSMPLESDLGSSAVDY--------------------------DW 156
Query: 184 ELERVLKPKDNSLS---KAKLRRSQSDKTDLTSEDYSKNSSHQAQQPTGTGSVVTGSICN 240
+L + K N + ++RS S++ D P +GS+CN
Sbjct: 157 DLSEIKAQKQNFQKNGYRIVMKRSHSERYD----------------PDAFNGKPSGSVCN 200
Query: 241 GGSVVKGNGSM--------------VNGSQCSSDVGPSASVVAAAIAKGLYKAPTPPKTG 286
SV+ G S+ NGS C SDVGPS SVVAAAIAKGLY AP
Sbjct: 201 TNSVIGGRESVRSKSELGTTKKIVNANGSLC-SDVGPSPSVVAAAIAKGLYPAP----DD 255
Query: 287 AGGLVTEEWTAAAKESDQQEVMKSKVERWRTELPPIYDNS--KMSANS--KHGGRPRRRT 342
G + E+WT E D E +K+K+ERWRTEL P+Y++ K+ + S K + +RR
Sbjct: 256 VGSSILEDWT----EKDSIEGLKTKIERWRTELHPMYESEIKKLPSRSYRKKSVKKQRRK 311
Query: 343 DSGGLFSCFGNAFGCEISITCGGGNSSKKKYQNGK 377
GLFSCFG A+GCE SITCGG N KKK NGK
Sbjct: 312 KGSGLFSCFGTAYGCEFSITCGGPN-QKKKSGNGK 345
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470322|ref|XP_004152866.1| PREDICTED: uncharacterized protein LOC101218582 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 231/395 (58%), Gaps = 75/395 (18%)
Query: 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
P +VLE+S++S +DLA VSK+M+T++VAW++P+RKLTTRVDQ GL NP+WNEKFVF+VDD
Sbjct: 5 PFQVLELSLLSANDLASVSKTMRTFAVAWINPDRKLTTRVDQVGLTNPTWNEKFVFKVDD 64
Query: 64 RFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR 123
L D TS + IEIY++A L+D L+G+V ++S+L +S S+ R++ LQVRRPSGR
Sbjct: 65 DLLEDPTSTVTIEIYSSALLRDILVGTVTEVVSNLIP--QSSSKSNMRFLTLQVRRPSGR 122
Query: 124 PQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNSKQSKDDQ 183
P+G + +G+TLLD+ RSMPL ++L + ++ D
Sbjct: 123 PKGTVKVGVTLLDSAKRSMPLESDLGSSAVDY--------------------------DW 156
Query: 184 ELERVLKPKDNSLS---KAKLRRSQSDKTDLTSEDYSKNSSHQAQQPTGTGSVVTGSICN 240
+L + K N + ++RS S++ D P +GS+CN
Sbjct: 157 DLSEIKAQKQNFQKNGYRIVMKRSHSERYD----------------PDAFNGKPSGSVCN 200
Query: 241 GGSVVKGNGSM--------------VNGSQCSSDVGPSASVVAAAIAKGLYKAPTPPKTG 286
SV+ G S+ NGS C SDVGPS SVVAAAIAKGLY AP
Sbjct: 201 TNSVIGGRESVRSKSELGTTKKIVNANGSLC-SDVGPSPSVVAAAIAKGLYPAP----DD 255
Query: 287 AGGLVTEEWTAAAKESDQQEVMKSKVERWRTELPPIYDNS--KMSANS--KHGGRPRRRT 342
G + E+WT E D E +K+K+ERWRTEL P+Y++ K+ + S K + +RR
Sbjct: 256 VGSSILEDWT----EKDSIEGLKTKIERWRTELHPMYESEIKKLPSRSYRKKSVKKQRRK 311
Query: 343 DSGGLFSCFGNAFGCEISITCGGGNSSKKKYQNGK 377
GLFSCFG A+GCE SITCGG N KKK NGK
Sbjct: 312 KGSGLFSCFGTAYGCEFSITCGGPN-QKKKSGNGK 345
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574881|ref|XP_002528347.1| hypothetical protein RCOM_1217340 [Ricinus communis] gi|223532215|gb|EEF34019.1| hypothetical protein RCOM_1217340 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 168/458 (36%), Positives = 234/458 (51%), Gaps = 97/458 (21%)
Query: 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVD 62
PP ++LE++++SG DLA VS+ M+TY+VAWV P+RKL+TRVD G NNP+WN+KFVFRVD
Sbjct: 8 PPFQLLELNVISGQDLAQVSRKMRTYAVAWVHPDRKLSTRVDAQGHNNPTWNDKFVFRVD 67
Query: 63 DRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLF-------GTLTHNSSSSTRYVAL 115
D FL ETSAIMIEIYA W +D +G+VRV++ +L H+ R+VAL
Sbjct: 68 DEFLYGETSAIMIEIYALHWFRDVHVGTVRVIVGNLIPPAQLYRQHQQHHVQLGMRFVAL 127
Query: 116 QVRRPSGRPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEV------------SSGAN 163
QVRR SGRPQGILN+G+ LLD +MRSMPL++++ + + + S A+
Sbjct: 128 QVRRHSGRPQGILNIGVALLDTSMRSMPLYSQISASAVGYRHLMGEKGTHTHTHHKSKAD 187
Query: 164 D--------------VMKPETTTAQNSKQS------------KDDQE--------LERVL 189
D + KPE ++ S K QE LE +
Sbjct: 188 DDRSSDNQNQFLLPWIPKPELRRTKSESSSMFGSDMVGKNIKKKTQEKAGSMVSGLEIIK 247
Query: 190 KPKDNSLSKAKLRRSQSDKTDLTSEDYSKNSSHQAQQP-------TGTGSVVTGSI--CN 240
K N K + S++ SE + K+ + +P + GS ++G C
Sbjct: 248 KDNKNYHHNIKKQSSKASSMITGSEIFKKHRNSPHNEPALGALTKSKYGSDISGEAPPCK 307
Query: 241 G------------------GSVVKGNGSMVNGSQCSSDVGPSASVVAAAIA--KGLYKAP 280
G G+ K NG S++GPSAS VAA + K YK
Sbjct: 308 GPKNGKDRNDVNSLSKSQFGTPKKMNGRTAPLHITESELGPSASEVAAIMVNNKNQYKVE 367
Query: 281 TPPKTGAGGLVTEEWTAAAKESDQQEVMKSKVERWRTELPPIYDNSKMSAN-----SKHG 335
A + W+ + E ++SK+ERWR ELPP+YD S++S+ + G
Sbjct: 368 E-----AESEIMGSWSLES----SMEGLQSKLERWRAELPPVYDRSELSSYPISSVAAGG 418
Query: 336 GRP-RRRTDSGGLFSCFGNAFGCEISITCGGGNSSKKK 372
R RRR+D G FSCFG G E SI CGGG+S++K+
Sbjct: 419 NRHNRRRSDGDGAFSCFGTFCGMECSIVCGGGSSNRKR 456
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083734|emb|CBI23723.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 219/387 (56%), Gaps = 40/387 (10%)
Query: 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
P ++LEI+++S DLA V +SM+TY++AWV P+RKL+TR+D G N+P+WN+KFVFRVDD
Sbjct: 6 PLQLLEINLISAQDLAPVGRSMRTYAIAWVHPDRKLSTRIDSTGHNSPTWNDKFVFRVDD 65
Query: 64 RFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLT---HNSSSSTRYVALQVRRP 120
FL +TSA+MI+IY+ W +D +G+VR+L+ +L H + R++ALQVRR
Sbjct: 66 EFLRADTSAVMIDIYSQHWFRDYHVGTVRILVGNLIPPSVRPGHRTQMGMRFMALQVRRS 125
Query: 121 SGRPQGILNLGITLLDNTMRSMPL--FAELC--GAGANFSEVSSGANDVMKPETTTAQNS 176
SGRPQG+LN+G+ LLD++MRSMPL F +L +GA S + +G+ +V P ++ S
Sbjct: 126 SGRPQGLLNIGVALLDSSMRSMPLYKFVDLLKKKSGAKASSMLNGS-EVSYP-VIKSKGS 183
Query: 177 KQSKDDQELERVLKPKDNSLSKAKLRRSQSDK------------TDLTSEDYSKNSSHQA 224
S +L L K N + + + S+ + D S+ K S +
Sbjct: 184 ILSAGSTDLGEPLMKKTNGKADSLINSSEGGEFTKGKVGTKFIGFDFGSKATPKTSGLEF 243
Query: 225 QQPTGTGSVVTGSICNGGSVVKGNGSMVNGSQCS-SDVGPSASVVAAAIAKGLYKAPTPP 283
P G G + + + + G G ++ GS S S+VGPS S VAAAIA +
Sbjct: 244 WGP-GKGGLRSFKLNDYG----GPKNITTGSMLSESEVGPSPSEVAAAIAHDRCRQAEDG 298
Query: 284 KTGAGGLVTEEWTAAAKESDQQEVMKSKVERWRTELPPIYDNSKMSANSKHGGRPRRRT- 342
A + W+ + E E ++SK++RWRTELPP+YD GG RR T
Sbjct: 299 NNSA----LDGWSLNSSE----EGLRSKLQRWRTELPPLYDRGAYGIYRTPGGHVRRHTE 350
Query: 343 ----DSGGLFSCFGNAFGCEISITCGG 365
D GLFSCFGN G E SI CGG
Sbjct: 351 GDEPDGSGLFSCFGNICGYECSIVCGG 377
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107517|ref|XP_002314508.1| predicted protein [Populus trichocarpa] gi|222863548|gb|EEF00679.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 230/442 (52%), Gaps = 86/442 (19%)
Query: 1 MVPPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFR 60
++ P ++LE++++S DL VS+ MKTY+VAWV P+R+L+TRVD G NNP+WN+KFVFR
Sbjct: 5 ILSPFQLLELNVISAQDLVKVSRKMKTYAVAWVHPDRRLSTRVDSEGCNNPTWNDKFVFR 64
Query: 61 VDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGT---LTHNSSS-STRYVALQ 116
VDDRFL +TSA+MIEIYA W +D IG+VRV++ +L HN R+VALQ
Sbjct: 65 VDDRFLHGDTSAVMIEIYALHWFRDIHIGTVRVIVGNLIPPPRPHHHNQFQLGMRFVALQ 124
Query: 117 VRRPSGRPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEV----------------SS 160
VRRPSGRPQGILN+G+ LLD++MRSMPL++++ + + ++ SS
Sbjct: 125 VRRPSGRPQGILNIGVALLDSSMRSMPLYSQISVSAVGYRQLMGEGELNHHKDDSDDKSS 184
Query: 161 G--ANDVMKPETTTAQNSKQSKDDQEL---------ERVLKPKDNSL-------SKAKLR 202
G +N + P + + D + + ++K K +S+ + L
Sbjct: 185 GIHSNSFLLPWLPKPELRRTKSDSSSMFGSIVMAKRKMIMKGKGSSMISGSEVEERKMLN 244
Query: 203 RSQSD--------------------KTDLTSEDYSKNSSHQAQ-------QPTGTGSVVT 235
+ +S K LTSE +K + + P TG +
Sbjct: 245 KGRSKASSLTGGSEIVKEDENGAFGKASLTSESLTKTDTKSTELDHILKPSPKFTG-LDL 303
Query: 236 GSICNGG---SVVKGNGSMVNGSQCSSDVGPSASVVAAAIAKGLYKAPTPPKTGAGGLVT 292
GS CN + K + S +GPSAS VAA IA+ ++ ++ G ++
Sbjct: 304 GSPCNNNFRYATPKKANFVSKPVITESQLGPSASEVAAVIARNKHRRVEETESEIIGEMS 363
Query: 293 EEWTAAAKESDQQEVMKSKVERWRTELPPIYDNSKMS----ANSKHGGRPRRR-----TD 343
+ + E ++SK+ERWRTELPP YD S +S + + GG+ +R TD
Sbjct: 364 LDGS--------MEALQSKLERWRTELPPAYDASNISSFPTSGTSKGGKVVKRHNHKHTD 415
Query: 344 SGGLFSCFGNAFGCEISITCGG 365
G FSCFG G E SI CGG
Sbjct: 416 DDGTFSCFGRFCGLECSIVCGG 437
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| TAIR|locus:2197868 | 601 | AT1G04540 "AT1G04540" [Arabido | 0.562 | 0.352 | 0.440 | 7.1e-56 | |
| TAIR|locus:2041654 | 401 | AT2G13350 "AT2G13350" [Arabido | 0.798 | 0.750 | 0.373 | 4.2e-51 | |
| TAIR|locus:2102980 | 391 | AT3G04360 "AT3G04360" [Arabido | 0.896 | 0.864 | 0.398 | 7.4e-50 | |
| TAIR|locus:2124933 | 250 | AT4G01200 "AT4G01200" [Arabido | 0.458 | 0.692 | 0.366 | 2.5e-28 | |
| TAIR|locus:2172828 | 219 | AT5G23950 "AT5G23950" [Arabido | 0.328 | 0.566 | 0.313 | 2.5e-09 | |
| TAIR|locus:5019474737 | 367 | AT2G40815 "AT2G40815" [Arabido | 0.339 | 0.348 | 0.283 | 1.3e-08 | |
| TAIR|locus:2088334 | 360 | AT3G16510 "AT3G16510" [Arabido | 0.318 | 0.333 | 0.305 | 1e-06 | |
| TAIR|locus:2025002 | 352 | AT1G07310 "AT1G07310" [Arabido | 0.334 | 0.357 | 0.297 | 8.6e-06 | |
| TAIR|locus:2036004 | 324 | SRC2 "AT1G09070" [Arabidopsis | 0.315 | 0.367 | 0.294 | 0.00019 | |
| CGD|CAL0000356 | 832 | RSP5 [Candida albicans (taxid: | 0.442 | 0.200 | 0.248 | 0.00025 |
| TAIR|locus:2197868 AT1G04540 "AT1G04540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 7.1e-56, Sum P(3) = 7.1e-56
Identities = 100/227 (44%), Positives = 141/227 (62%)
Query: 1 MVPPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFR 60
M P ++LE++I+S DLA V++ KTY+VAWV ERKLTTRVD NG NP+WN+KFVFR
Sbjct: 4 MFPSFQLLELNIISAQDLAPVARKTKTYAVAWVHSERKLTTRVDYNGGTNPTWNDKFVFR 63
Query: 61 VDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLF------GTLTHNSS------S 108
V++ FL +TSA++IEIYA W +D +G+VRVLIS+L G T N+
Sbjct: 64 VNEEFLYADTSAVVIEIYALHWFRDVHVGTVRVLISNLIPPNRRPGYRTSNNEYRRTPPP 123
Query: 109 STRYVALQVRRPSGRPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKP 168
R+VALQVRR SGRPQGILN+G+ L+D +MRSMPL+ + + + ++ G D
Sbjct: 124 GMRFVALQVRRTSGRPQGILNIGVGLIDGSMRSMPLYTHMDSSAVGYRDLL-GEEDHHLQ 182
Query: 169 ETTTAQNSKQSKDDQELERVLKPKDNSLSKAKLRRSQSDKTDLTSED 215
N SK+ Q + + +S+ +LRR++SD + + D
Sbjct: 183 HLHLNSNKGSSKNPQSPSS--RQYQSVISRPELRRTKSDTSSMVVSD 227
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| TAIR|locus:2041654 AT2G13350 "AT2G13350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
Identities = 123/329 (37%), Positives = 179/329 (54%)
Query: 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDD 63
P ++LE++I+S +LA V++ MKTY++AW+DPERKLTTRVD G +P+WN+KFVFR+D+
Sbjct: 6 PCQILELNIISAQELAPVARCMKTYAIAWIDPERKLTTRVDNTGGTSPTWNDKFVFRLDE 65
Query: 64 RFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR 123
L D TS ++IEIYA W KD +G+V+ LIS L + SS+ R+V L+V R SGR
Sbjct: 66 EALYDATSIVVIEIYALHWFKDIHVGTVQALISDLV-----SPSSAMRFVTLEVLRASGR 120
Query: 124 PQGILNLGITLLDNTMRSMPLFAE--LCGAGANFSEVSSGANDVMKPETTTAQNSKQSKD 181
P G+LN+ + L+DN+ +SMPL E L N S G K +T++ +S + K
Sbjct: 121 PHGLLNIAVGLIDNSGQSMPLLFEEDLLFHKKNISSKPVGLRR-SKSDTSSMVDSPR-KV 178
Query: 182 DQELERVLKPKDNSLSKAKLRRSQSDKTDLTSEDYSKNSSHQAQQPTGTGSVVTGSICNG 241
Q RV ++ K + S S + + N+ Q +Q G+ +
Sbjct: 179 TQS--RVSSTTNSGFDKDEFS-SDSQMVVYEPQRKTPNTMRQTKQQLVYGTPMRPRKTTA 235
Query: 242 GSVVKGN---GSMVNGSQC---SSDVGPSASVVAAAIAKGLYKAPTPPKTGAGGLVTEEW 295
+ + G+ + SD+GPSASVVAA IAK KA T G E
Sbjct: 236 YTPKRNTIEYGTPMRSRPIVITESDLGPSASVVAAQIAKE--KALT-------GKDAEST 286
Query: 296 TAAAKESDQQEVMKSKVERWRTELPPIYD 324
+ E E ++SK+ERW+ LP + D
Sbjct: 287 VISVGERSV-EGLRSKLERWQANLPVVLD 314
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| TAIR|locus:2102980 AT3G04360 "AT3G04360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 159/399 (39%), Positives = 202/399 (50%)
Query: 7 VLEISIVSGHDLALVSKSMKTYSVAWV--DPERKLTTRVDQNGLNNPSWNEKFVFRVDDR 64
VLEI+++S DLA VS++MKTYSVAW+ DP RKLTTRVDQ+ NP WNEKFVFRV+D+
Sbjct: 10 VLEINLISAQDLAPVSRNMKTYSVAWINTDPMRKLTTRVDQSNRANPIWNEKFVFRVNDK 69
Query: 65 FLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLF--------GTLTHNSSSSTRYVALQ 116
L + SAI+IEIYAAAW KDAL+G+V VL+S LF G +++ R V LQ
Sbjct: 70 ILYVDASAIVIEIYAAAWAKDALVGTVNVLLSDLFAPWSGFGDGNDGGGGNNNMRLVTLQ 129
Query: 117 VRRPSGRPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNS 176
+RRPSGR QG L LG+ LLD RSMPL E V G+ K E +NS
Sbjct: 130 IRRPSGRLQGFLRLGVALLDGGQRSMPLSIE----------VFDGSR---KGE----RNS 172
Query: 177 KQSKDDQELERVLKPKDNSLSKAKLRRSQSD---KTDLTSEDYSKNSSHQAQQPTGTGSV 233
K DQE R++ + NS + L S +D KT + + + G S+
Sbjct: 173 V--KRDQEASRMMHRRTNS-DQTDLTTSTNDYGVKTGVVTGN-GGGGGGGGGIVVGADSM 228
Query: 234 VTGSICNGGSVVKGNGSMVNGSQCSSDVGPSASVVAAAIAKGLYKAPTPPKTGAGGLVTE 293
V GS+C+ S + + S+V + + V AA + G V E
Sbjct: 229 VNGSLCS--SDIGPSASVVAAAIAQGLYNRQKTAVKAANKEDASSILEGKTEGIEHRV-E 285
Query: 294 EWTA----------AAKESDQQEVMKSKVERWRTELPPIYDNSKMSANSKHGGRPRRRTD 343
W A AA SD R R K GG ++
Sbjct: 286 RWRAEKNGTGGAGGAAGSSDDSSGKGGAGRRRRRRRR----KEKQQGRRNGGGEGKK--- 338
Query: 344 SGGLFSCFGNAFGCEISITCGGGN-----SSKKKYQNGK 377
GLFSCFGN FGCEISITCGGG+ S+KK+Y N K
Sbjct: 339 --GLFSCFGNVFGCEISITCGGGSGGEGDSTKKRYNNNK 375
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| TAIR|locus:2124933 AT4G01200 "AT4G01200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 66/180 (36%), Positives = 103/180 (57%)
Query: 6 RVLEISIVSGHDLALVS---KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVD 62
+VLEI+++S L + + ++TY+ WVD KL TR+D+ G NP WN+KFVF+V
Sbjct: 5 QVLEINLISAQGLKEPTGKLRRLQTYASVWVDSSSKLRTRIDRIGSENPIWNDKFVFQVS 64
Query: 63 DRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG 122
FL+ ETS + IEIYA +L+D LIG+VR L+S+ T S VALQ+RRPSG
Sbjct: 65 PEFLSSETSGVSIEIYAVGYLRDHLIGTVRFLVSNFLPTAAVKVPS---LVALQIRRPSG 121
Query: 123 RPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEVSSGANDVMKPETTTAQNSKQSKDD 182
+ G+LN+ ++D + F + + ++ + V E +A + + SK++
Sbjct: 122 KFHGVLNIAAMVMDASELPADFFKSVQEIRRS-RKMRKSRSAVSSSENGSADDGESSKEN 180
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| TAIR|locus:2172828 AT5G23950 "AT5G23950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 153 (58.9 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 42/134 (31%), Positives = 70/134 (52%)
Query: 6 RVLEISIVSGHDLALVS---KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVD 62
R +E++I S D+ V+ K Y+V W+DP+ K +TRVD++G +WNE FV +
Sbjct: 6 REVEVTISSAKDIKNVNWRNGPNKPYAVVWIDPKFKSSTRVDEDGNTCTTWNETFVIALP 65
Query: 63 DRFLTDETSAIMIEIYAAAWLKDA--LIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120
D+ + I I A ++ LIGS + + + + L+++RP
Sbjct: 66 PA--NDDDDKVYINIVHAGREENTKPLIGSAHLSLRDVIDDVGFGVPFMK---TLKLKRP 120
Query: 121 SGRPQGILNLGITL 134
SGRPQG L++ +T+
Sbjct: 121 SGRPQGKLDVTVTV 134
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| TAIR|locus:5019474737 AT2G40815 "AT2G40815" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/141 (28%), Positives = 71/141 (50%)
Query: 7 VLEISIVSGHDLAL---VSKSM---KTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFR 60
++EI ++S L + + S+ + Y+V W+DPE K T +D + +NP W KF
Sbjct: 5 LVEICMISARGLRVGIGIGSSLLKHQWYAVGWLDPEDKYCTTIDASRADNPVWRTKFATL 64
Query: 61 VDDRFLTDETSAIMIEIYAAA--WLKDALIGSVRVLISHLFGTLTHNSSSSTRYV----A 114
+DD + D A+ +E+Y+ +L+ L GS V + SSS + +
Sbjct: 65 LDDSTIQDSKLALQVEVYSREPLFLRKRLHGSATVSLKEFLTKYKQQQSSSKAVIEETGS 124
Query: 115 LQVRRP-SGRPQGILNLGITL 134
Q+R+ S +PQG +++ I +
Sbjct: 125 YQLRKTNSSKPQGFVDVSIRI 145
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| TAIR|locus:2088334 AT3G16510 "AT3G16510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 41/134 (30%), Positives = 68/134 (50%)
Query: 8 LEISIVSGHDLA---LVSKSMKTYSVAWV--DPERKL---TTRVDQNGLNNPSWNEKFVF 59
LE+++ S DL L++K M Y+V W+ D RK T +D+ G + P+WN F
Sbjct: 6 LELNVYSAKDLENVNLITK-MDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNHTVKF 64
Query: 60 RVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRV-LISHLFGTLTHNSSSS----TRYVA 114
VD R + +++++ D +G V+V ++ L G+ + +S+ R+V
Sbjct: 65 SVDQRLAHEGRLTLVVKLVCDRIFGDKDLGEVQVPVLELLHGSSSPSSNGDGQGMMRFVT 124
Query: 115 LQVRRPSGRPQGIL 128
QVR P G+ QG L
Sbjct: 125 YQVRTPFGKGQGSL 138
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| TAIR|locus:2025002 AT1G07310 "AT1G07310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 41/138 (29%), Positives = 72/138 (52%)
Query: 5 PRVLEISIVSGHDLALVS---KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRV 61
P L +++VS L V+ +K Y V ++D + L+TR D + P WNE+ +
Sbjct: 6 PLDLVVTVVSAKHLKNVNWRNGDLKPYVVLYLDQDHPLSTRSDDSSSIKPVWNERITLPL 65
Query: 62 DDRFLTDETSAIMIEIYAA--AWLKDALIGSVRVLISHLFGTLTHNSSSSTRYV-ALQVR 118
R + + S + IE++ + + L L+GSVR ++ L + + S + +L++
Sbjct: 66 T-RSVHE--SVLNIEVFHSNSSDLAKTLVGSVRFPLARLIDS---DGSMIPELINSLELV 119
Query: 119 RPSGRPQGILNLGITLLD 136
RPSGRPQG + L + + D
Sbjct: 120 RPSGRPQGKIRLKLAIKD 137
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| TAIR|locus:2036004 SRC2 "AT1G09070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 38/129 (29%), Positives = 58/129 (44%)
Query: 6 RVLEISIVSGHDLA---LVSKSMKTYSVAWV--DPERKLTTRVDQNGLNNPSWNEKFVFR 60
R L+++I+S DL L+ K Y+V + D K T+VD++ P W +
Sbjct: 4 RSLDLTIISAEDLKDVQLIGKQ-DLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQMKLT 62
Query: 61 VDDRFLTDETSAIMIEIYAAAWLK-DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119
VDD D ++ EI A + D +G V V + L L N + V VR
Sbjct: 63 VDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKEL---LDQNKGDEEKTVTYAVRL 119
Query: 120 PSGRPQGIL 128
P+G+ +G L
Sbjct: 120 PNGKAKGSL 128
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| CGD|CAL0000356 RSP5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 92 (37.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRF 65
+ + +V+ L V + ++V VD + TT + LN P WNE F F+
Sbjct: 17 INVKVVAAESLYKRDVFRQPDPFAVLTVDGSQTKTTITAKKTLN-PYWNETFNFQAK--- 72
Query: 66 LTDETSAIMIEIYAAAWLK---DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG 122
E S ++I+++ K +G + V I + L+ NSS T L+ +
Sbjct: 73 ---EDSILVIQVFDQKKFKKKDQGFLGVINVRIGDVID-LSLNSSEETITRDLKKSNENL 128
Query: 123 RPQGILNLGITLLDNTMRSMPLFAELCGAGA----NFSEVSSGANDV-MKPETTTAQNSK 177
G + + I+ N+ A G GA N + ++SG N++ + TTTA ++
Sbjct: 129 AVSGKIIVVISHNRNSNGGGVTTATTRGTGASSSNNIATITSGVNNLRIGSATTTANSTA 188
Query: 178 QSKDD 182
Q+ D
Sbjct: 189 QASSD 193
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00190211 | hypothetical protein (364 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 377 | |||
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 2e-38 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-11 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 7e-10 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-09 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 1e-05 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 8e-04 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 0.001 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 0.001 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 0.001 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 0.002 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-38
Identities = 54/126 (42%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 8 LEISIVSGHDLALVSKS--MKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRF 65
LEI+I+S DL V+ MK Y+V W+DP K +T VD++G NP+WNE F +D+R
Sbjct: 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 66 LTDETSAIMIEIYAA-AWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP 124
L A+ IE+Y L D LIG VRV + L + + R+++ Q+RRPSG+P
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGAS--PAGELRFLSYQLRRPSGKP 119
Query: 125 QGILNL 130
QG+LN
Sbjct: 120 QGVLNF 125
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SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
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Score = 60.5 bits (147), Expect = 1e-11
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 8 LEISIVSGHDL--ALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRF 65
L ++++ +L ++ Y + ++K T+V +N LN P WNE F F V D
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLN-PVWNETFEFPVLD-- 57
Query: 66 LTDETSAIMIEIY-AAAWLKDALIGSVRVLISHLFGT 101
E+ + +E++ + KD +G V + +S L +
Sbjct: 58 --PESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDS 92
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-10
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 7 VLEISIVSGHDLALVSK--SMKTYSVAWVDPER--KLTTRVDQNGLNNPSWNEKFVFRVD 62
L + I+S +L K Y +D + K T+V +N LN P WNE F F V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLN-PVWNETFEFEVP 59
Query: 63 DRFLTDETSAIMIEIYAA-AWLKDALIGSVRVLISHL 98
E + + IE+Y + +D IG V + +S L
Sbjct: 60 P----PELAELEIEVYDKDRFGRDDFIGQVTIPLSDL 92
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-09
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 8 LEISIVSGHDLALVSKSMKT--YSVAWVDPERKLT--TRVDQNGLNNPSWNEKFVFRVDD 63
L ++++S +L + K+ Y + ++K T T+V +N LN P WNE F F V
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLN-PVWNETFTFEVTL 59
Query: 64 RFLTDETSAIMIEIY-AAAWLKDALIGSVR 92
L + + IE+Y + KD IG V
Sbjct: 60 PELAE----LRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 7 VLEISIVSGHDLA---LVSKSMKTYSVAWVDPER-----KLTTRVDQNGLNNPSWNEKFV 58
+L + +++G DLA + S ++ DP+ + T+ + LN P WNE+F
Sbjct: 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLN-PKWNEEFF 59
Query: 59 FRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHL-FGTLTHNSSSSTRYVALQ 116
FRV+ R ++ E++ L +D +G V V +++L T + + + L+
Sbjct: 60 FRVNPR-----EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR 114
Query: 117 VRRPSGRPQGILNLGITLL 135
R R +G L L + L
Sbjct: 115 PRSSKSRVKGHLRLYMAYL 133
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 8e-04
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 8 LEISIVSGHDLALVSKSMKTYSVAWVDPERKL-----TTRVDQNGLNNPSWN-EKFVFRV 61
L++ +V+ DL ++ +S + A+V E K T V + LN P WN E F F V
Sbjct: 1 LKVRVVAARDLPVMDRSSDL-TDAFV--EVKFGSTTYKTDVVKKSLN-PVWNSEWFRFEV 56
Query: 62 DDRFLTDETSAIMI---EIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSS 109
DD L DE I + + Y+A + IG V + ++ L L +S S
Sbjct: 57 DDEELQDEPLQIRVMDHDTYSA----NDAIGKVYIDLNPL---LLKDSVSQ 100
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 19/71 (26%)
Query: 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDP-------------ERKLTTR-VDQNGLNN 50
P L I I+SG L K K + VDP K T+ V NG N
Sbjct: 1 PLTLTIKIISGQQL---PKP-KGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFN- 55
Query: 51 PSWNEKFVFRV 61
P WNE F F V
Sbjct: 56 PVWNETFEFDV 66
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 39 LTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHL 98
TTRV + NNPSWN F V DR S + + + D ++GSV + ++ L
Sbjct: 27 YTTRVKKKT-NNPSWNASTEFLVTDR----RKSRVTVVVKDDRDRHDPVLGSVSISLNDL 81
Query: 99 FGTLTHNSSSSTRYVALQVRRPSGR 123
+S ++ L GR
Sbjct: 82 I----DATSVGQQWFPLS-GNGQGR 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 50 NPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW-LKDALIGSVRVLISHL 98
NP W+E+FVF DD L + ++ I + A KD+ I V V +S L
Sbjct: 45 NPVWSEEFVF--DD--LPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKL 90
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 39 LTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLIS 96
L TR Q NPSWNE+ +F + F E I+ KD +G + ++
Sbjct: 34 LRTRPSQTRNGNPSWNEELMFVAAEPF---EDHLILSVEDRVGPNKDEPLGRAVIPLN 88
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.83 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.81 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.8 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.79 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.79 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.79 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.78 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.78 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.77 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.77 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.77 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.77 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.77 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.76 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.75 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.75 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.74 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.73 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.73 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.73 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.73 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.72 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.72 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.72 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.72 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.72 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.71 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.71 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.7 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.7 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.7 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.69 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.68 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.68 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.68 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.67 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.67 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.67 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.66 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.66 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.66 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.66 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.65 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.65 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.65 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.65 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.65 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.64 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.64 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.64 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.64 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.64 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.64 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.63 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.63 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.63 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.61 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.61 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.6 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.6 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.6 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.6 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.6 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.59 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.58 | |
| PLN03008 | 868 | Phospholipase D delta | 99.58 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.58 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.58 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.57 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.56 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.56 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.56 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.55 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.54 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.54 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.52 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.52 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.51 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.51 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.5 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.5 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.5 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.5 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.49 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.49 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.49 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.49 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.48 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.48 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.47 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.47 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.44 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.42 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.36 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.35 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.31 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 99.29 | |
| PLN02270 | 808 | phospholipase D alpha | 99.28 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.24 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.23 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 99.22 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 99.17 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.16 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.15 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.14 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.1 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.0 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.98 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.96 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.92 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 98.89 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.76 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.67 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.48 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.42 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 97.97 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.73 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 97.65 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 97.32 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.28 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.27 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.25 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.17 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.03 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 96.98 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.96 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.72 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 96.45 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.77 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.6 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 95.57 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 94.98 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.95 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 94.87 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 94.58 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 94.29 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 93.76 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 92.84 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 92.05 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.04 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 91.57 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 91.15 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 90.97 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 89.72 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 89.18 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 88.07 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 87.2 | |
| cd08679 | 178 | C2_DOCK180_related C2 domains found in Dedicator O | 84.78 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 80.48 |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=161.38 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=96.5
Q ss_pred eEEEEEEEEeecCCCC-CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 6 RVLEISIVSGHDLALV-SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
+.|+|+|++|++|++. .+++||||+|+++. ++++|+|+.+++.||+|||+|.|.+.+. ...|.|+|||++.+
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~-----~~~l~~~V~d~d~~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEG-----VDSIYIEIFDERAFT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCC-----CcEEEEEEEeCCCCc
Confidence 6899999999999765 48999999999974 6789999877789999999999999753 36799999999976
Q ss_pred CCceeEEEEEEccc-ccCCcccCCCCCceeEEEEeeCCCC-CcceEEEEEEEE
Q 035970 84 KDALIGSVRVLISH-LFGTLTHNSSSSTRYVALQVRRPSG-RPQGILNLGITL 134 (377)
Q Consensus 84 ~DdlIG~a~IpLs~-L~~~~~~~~~~~~~~v~y~Lrr~sG-k~~G~L~LsV~f 134 (377)
.|++||.+.|+|.. +..+.. ...||+|....+ +..|.|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~-------~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGET-------LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCC-------ccccEeCcCccCCCCceEEEEEEeC
Confidence 58999999999964 544321 357999987554 578999999975
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=156.50 Aligned_cols=122 Identities=44% Similarity=0.789 Sum_probs=101.5
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc-C
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW-L 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~-~ 83 (377)
+|+|+|++|++|+.. .+.+||||+|++.+..+.+|+++.+++.||.|||+|.|.+....+......|.|+|||++. .
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 489999999999764 4789999999998757789998876689999999999999875322235789999999986 5
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNL 130 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~L 130 (377)
.|++||++.|+|.++...... .......||+|++++|+++|+|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~--~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASP--AGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCC--CCcceeEEEEeECCCCCcCeEEeC
Confidence 789999999999999876531 113467899999999999999985
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=150.47 Aligned_cols=116 Identities=19% Similarity=0.299 Sum_probs=96.9
Q ss_pred eEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 6 RVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+.|+|+|++|++|++. .+.+||||++++++ .+.+|+++.+++.||.|||.|.|.+... ....|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITED----KKPILKVAVFDDDKR 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCC----CCCEEEEEEEeCCCC
Confidence 5799999999999753 57899999999985 6778888766678999999999999864 247899999999877
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
+|++||++.+++.++..... ...||+|.. +++..|+|.|.++|
T Consensus 76 ~~~~iG~~~~~l~~~~~~~~-------~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALKEGE-------FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhhcCC-------CCCcEEecc-CCcEeeEEEEEEEC
Confidence 79999999999999866432 236888875 46789999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=146.99 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 7 VLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
.|+|+|++|++|+. ..+.+||||++.+++...++|++..+ +.||.|||+|.|.+... ...|.|+|||++.+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~-----~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDV-----TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCC-----CCeEEEEEEeCCCCC
Confidence 38999999999964 35789999999998656789998875 79999999999998752 47899999999976
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC-CcceEEEEEEEEEe
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG-RPQGILNLGITLLD 136 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG-k~~G~L~LsV~f~p 136 (377)
+|++||.+.++|.++..... ...|++|.++.+ +..|+|+|.++|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~-------~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKP-------TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCC-------eEEEEECCCCCCccCceEEEEEEEECC
Confidence 79999999999999886533 347999987654 78999999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=154.45 Aligned_cols=124 Identities=19% Similarity=0.343 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 7 VLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
.|+|+|++|++|.. .++.+||||++.+++ ++.+|++..+++.||+|||+|.|.+.++. ...|.|+|||++..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~----~~~l~v~V~d~~~~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPF----EDHLILSVEDRVGPN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCcc----CCeEEEEEEEecCCC
Confidence 48999999999964 358999999999985 68899988665799999999999997642 36899999999864
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC--------CcceEEEEEEEEEecC
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG--------RPQGILNLGITLLDNT 138 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG--------k~~G~L~LsV~f~p~s 138 (377)
+|++||++.|+|.++..... .......||+|.++.+ +.+|.|+|.|.|....
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~---~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVD---DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred CCCeEEEEEEEHHHCcccCC---CCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 79999999999999865421 1223458999997654 6789999999998654
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=148.41 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCc
Q 035970 7 VLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDA 86 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~Dd 86 (377)
.|.|+|++|++|+.. .+||||++.++. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++..+|+
T Consensus 1 ~L~V~Vi~a~~L~~~--~~Dpyv~v~l~~-~~~kT~v~~~-t~nP~Wne~F~f~~~~~----~~~~L~~~v~d~d~~~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN--SNDPVVEVKLGN-YKGSTKAIER-TSNPEWNQVFAFSKDRL----QGSTLEVSVWDKDKAKDD 72 (121)
T ss_pred CEEEEEEEecCCCcc--cCCCEEEEEECC-ccccccccCC-CCCCccceEEEEEcCCC----cCCEEEEEEEeCCCCcCc
Confidence 489999999999866 789999999974 6789999875 78999999999998653 357899999999977999
Q ss_pred eeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC-CCcceEEEEEEEEE
Q 035970 87 LIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS-GRPQGILNLGITLL 135 (377)
Q Consensus 87 lIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s-Gk~~G~L~LsV~f~ 135 (377)
+||.+.|+|.++..... .+......||+|.+.. .+..|+|+|+|+|.
T Consensus 73 ~lG~~~i~l~~l~~~~~--~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVP--PDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCC--CCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 99999999999875432 1223345799998765 48899999999984
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=147.58 Aligned_cols=121 Identities=23% Similarity=0.307 Sum_probs=97.4
Q ss_pred EEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 7 VLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
.|.|+|++|++|.. ..+.+||||++++++ ++++|++.++ +.||.|||+|.|.+..... .....|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPK-DLNPVWNEKLVFNVSDPSR-LSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcC-CCCCccceEEEEEccCHHH-ccCCeEEEEEeeCCCCc
Confidence 38999999999964 357899999999985 6788998865 7999999999999875310 0235799999998865
Q ss_pred -CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC--CCCcceEEEEEEEEEe
Q 035970 84 -KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP--SGRPQGILNLGITLLD 136 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~--sGk~~G~L~LsV~f~p 136 (377)
+|+|||++.|+|.++.+... ....||+|.++ .++.+|+|.|.+.|.+
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~------~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSE------AVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCC------ccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 69999999999999874321 23579999865 3578999999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=146.14 Aligned_cols=118 Identities=15% Similarity=0.327 Sum_probs=93.0
Q ss_pred EEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC-CCCceEEEEEEEcCcC-
Q 035970 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT-DETSAIMIEIYAAAWL- 83 (377)
Q Consensus 8 LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~-~~~s~L~VeVyD~d~~- 83 (377)
|+|+|++|++|.. ..+.+||||+|.+++ .+++|+++++ +.||+|||+|.|.+...... .....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~ 78 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence 5899999999974 357899999999974 6789999876 69999999999999762100 1357899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNLGI 132 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~LsV 132 (377)
+|++||++.|+|.++..... .....||+|.... .+..|+|+|.|
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~-----~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKG-----RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CCceeEEEEEEHHHhhccCC-----CcccEEEECcCCCCCCccccceEEEEe
Confidence 59999999999999873211 1235799998543 35789999987
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=147.91 Aligned_cols=110 Identities=25% Similarity=0.392 Sum_probs=90.6
Q ss_pred EEEEEEEEeec---CC--CCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 7 VLEISIVSGHD---LA--LVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 7 ~LeVtVISAkd---L~--~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
.|+|+|++|++ |. +..|.+||||+|++++ ++.+|+++++ +.||+|||+|.|.+... ...|.|+|||++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-~~~rTk~~~~-~~nP~WnE~f~f~v~~~-----~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-KWVRTRTVED-SSNPRWNEQYTWPVYDP-----CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-EEeEcCcccC-CCCCcceeEEEEEecCC-----CCEEEEEEEECC
Confidence 38999999999 54 3468999999999974 6889999875 79999999999999753 468999999998
Q ss_pred cC-------CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEE
Q 035970 82 WL-------KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNL 130 (377)
Q Consensus 82 ~~-------~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~L 130 (377)
.+ +|++||++.|+|..+..+.. ...||+|...+ .+..|.|++
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~-------~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRV-------YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHccCCCE-------EeeEEEeEeCCCCCccCCcEEEe
Confidence 65 89999999999999876533 35799999643 467788775
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-18 Score=144.05 Aligned_cols=119 Identities=24% Similarity=0.290 Sum_probs=96.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
...|+|+|++|+||+.. +.+||||+|.++.....+|++. + +.||.|||+|.|.+.++. ...|.|.|||++.+
T Consensus 3 ~~~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~~~kT~v~-~-~~nP~WnE~f~f~~~~~~----~~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK-HVPHPYCVISLNEVKVARTKVR-E-GPNPVWSEEFVFDDLPPD----VNSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCCC-CCCCeeEEEEECCEeEEEeecC-C-CCCCccCCEEEEecCCCC----cCEEEEEEEECCCCC
Confidence 46799999999999763 5789999999986556789874 3 699999999999876542 25788999998854
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEEEEEEEec
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNLGITLLDN 137 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~LsV~f~p~ 137 (377)
+|++||.+.|||.++..+.. ...||+|...+ .+..|+|+|+++|.+.
T Consensus 76 ~d~~iG~v~i~l~~l~~~~~-------~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 76 KDSEIAEVTVQLSKLQNGQE-------TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCeEEEEEEEHhHccCCCc-------ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 79999999999999876532 24799998653 4678999999999864
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=142.44 Aligned_cols=118 Identities=17% Similarity=0.344 Sum_probs=98.1
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEECC-CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-CC
Q 035970 8 LEISIVSGHDLALVSKSMKTYSVAWVDP-ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KD 85 (377)
Q Consensus 8 LeVtVISAkdL~~~~g~~DPYVvV~L~p-~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~D 85 (377)
|.|+|++|++|+...+.+||||+++++. ..+.+|++..+ +.||+|||.|.|.+.. ....|.|+|||++.. .|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~~~v~d~~~~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSP-----NSKELLFEVYDNGKKSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCC-----CCCEEEEEEEECCCCCCC
Confidence 6899999999976567999999999973 35689999875 7999999999999964 246899999999865 59
Q ss_pred ceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC---CCCcceEEEEEEEEEecC
Q 035970 86 ALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP---SGRPQGILNLGITLLDNT 138 (377)
Q Consensus 86 dlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~---sGk~~G~L~LsV~f~p~s 138 (377)
++||++.|+|.++..... ...||+|... +....|+|.+.+.|.+.+
T Consensus 75 ~~lG~~~i~l~~l~~~~~-------~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 75 KFLGLAIVPFDELRKNPS-------GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ceEEEEEEeHHHhccCCc-------eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 999999999999886543 1368888754 356899999999998775
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=143.27 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=97.8
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCC------CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPE------RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~------~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
+|+|+|++|++|... .+.+||||++.+.+. .+.+|++.++ +.||.|||+|.|.+... ...|.|+||
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~-----~~~l~~~v~ 74 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPR-----EHRLLFEVF 74 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCC-----CCEEEEEEE
Confidence 489999999999754 578999999999643 2568998765 89999999999999753 467999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC--CCCcceEEEEEEEEE
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP--SGRPQGILNLGITLL 135 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~--sGk~~G~L~LsV~f~ 135 (377)
|++.+ .|++||.+.|++.++....+. ........||+|..+ .++..|+|+|+|.|.
T Consensus 75 d~~~~~~~~~iG~~~i~l~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 75 DENRLTRDDFLGQVEVPLNNLPTETPG-NERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred ECCCCCCCCeeEEEEEEHHHCCCcCcc-ccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 99966 689999999999998865331 112235679999864 567899999999884
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=142.72 Aligned_cols=119 Identities=17% Similarity=0.305 Sum_probs=98.2
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
|..+|+|+|++|++|... .+.+||||++++++ ++.+|++.++ +.||+|||.|.|.+.. ....|.|+|||++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~i~V~d~~ 73 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-ESVRSPVQKD-TLSPEFDTQAIFYRKK-----PRSPIKIQVWNSN 73 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-EEEEeCccCC-CCCCcccceEEEEecC-----CCCEEEEEEEECC
Confidence 467899999999999753 57899999999975 5789999865 7999999999998875 3578999999999
Q ss_pred cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEee----CCCCCcceEEEEEEEEEecC
Q 035970 82 WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR----RPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 82 ~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr----r~sGk~~G~L~LsV~f~p~s 138 (377)
.++|++||.+.+++..+.... ..+|+|. ..+++..|+|.|++.+.+..
T Consensus 74 ~~~d~~lG~~~~~l~~~~~~~---------~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 74 LLCDEFLGQATLSADPNDSQT---------LRTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred CCCCCceEEEEEecccCCCcC---------ceEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 888999999999998753221 2456664 35788999999999988764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=149.48 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=97.7
Q ss_pred CeEEEEEEEEeecCCCC--------------------------------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCe
Q 035970 5 PRVLEISIVSGHDLALV--------------------------------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPS 52 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--------------------------------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~ 52 (377)
.++|+|+|++|++|++. .+.+||||+|++++....+|+++++ +.||.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCCCc
Confidence 58999999999999642 2468999999998655579999875 69999
Q ss_pred eeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCC---cceEEE
Q 035970 53 WNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR---PQGILN 129 (377)
Q Consensus 53 WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk---~~G~L~ 129 (377)
|||+|.|.+... ...|.|+|||++.+++++||.+.|||.++..+.. ...||+|....++ ..+.|+
T Consensus 85 WnE~F~~~~~~~-----~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~-------~~~w~~L~~~~~~~~~~~~~l~ 152 (158)
T cd04015 85 WNESFHIYCAHY-----ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEP-------VEGWLPILDSNGKPPKPGAKIR 152 (158)
T ss_pred cceEEEEEccCC-----CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCC-------cceEEECcCCCCCCCCCCCEEE
Confidence 999999998653 4689999999998889999999999999876432 3579999876553 568999
Q ss_pred EEEEEE
Q 035970 130 LGITLL 135 (377)
Q Consensus 130 LsV~f~ 135 (377)
|+++|.
T Consensus 153 v~~~f~ 158 (158)
T cd04015 153 VSLQFT 158 (158)
T ss_pred EEEEEC
Confidence 999883
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=140.24 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=97.1
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCeEEEEEECC-CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 5 PRVLEISIVSGHDLALV---SKSMKTYSVAWVDP-ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p-~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
.+.|+|+|++|++|+.. .+.+||||++++++ ....+|+++.+ +.||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~-----~~~~l~~~v~d~ 74 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNS-----LTEPLNLTVYDF 74 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCC-----CCCEEEEEEEec
Confidence 36899999999999743 35789999999986 46789998865 7999999999999884 357899999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEe
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLD 136 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p 136 (377)
+.. .|++||.+.++|.++...... ...++.+. .+++.+|+|+|+++|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~------~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPEQ------ENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCccc------cCcchhhh-cCCccceEEEEEEEeCC
Confidence 865 789999999999999875431 12334443 57889999999999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=139.05 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=92.8
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
.|.|+|++|++|+.. .+.+||||++.+.+ ..+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~----~~~~l~v~v~d~d~ 75 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQ----VKNVLELTVMDEDY 75 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcc----cCCEEEEEEEECCC
Confidence 389999999999754 47899999999963 35678998876 79999999999998764 24679999999997
Q ss_pred CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 83 LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
++|++||++.++|.++..+.. ...||+|... ..|+|++.+.+
T Consensus 76 ~~~~~iG~~~~~l~~l~~g~~-------~~~~~~L~~~---~~g~l~~~~~~ 117 (119)
T cd04036 76 VMDDHLGTVLFDVSKLKLGEK-------VRVTFSLNPQ---GKEELEVEFLL 117 (119)
T ss_pred CCCcccEEEEEEHHHCCCCCc-------EEEEEECCCC---CCceEEEEEEe
Confidence 799999999999999876532 3578988643 58888888876
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=139.56 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=94.7
Q ss_pred EEEEEEEeecCCCC---CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 8 LEISIVSGHDLALV---SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 8 LeVtVISAkdL~~~---~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
|.|+|+.|++|+.. .+.+||||.|.++.....+|++.++ +.||.|||+|.|.|.+. ...|.|.|||++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~-----~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRT-----FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCC-----CCEEEEEEEECCCCC
Confidence 78999999999753 3688999999997555688999865 89999999999999853 46899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC--CCCCcceEEEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR--PSGRPQGILNLGITL 134 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr--~sGk~~G~L~LsV~f 134 (377)
+|++||.+.++|+++..... ...||+|.. +.++.+|+|+|+++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYG-------KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCC-------cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 79999999999999875422 357999985 345679999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-17 Score=135.29 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=94.8
Q ss_pred eEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc-
Q 035970 6 RVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW- 82 (377)
Q Consensus 6 g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~- 82 (377)
+.|+|+|++|++|+. ..+.+||||++.+.. ...+|+++++ +.||.|||+|.|.+.+. ...|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~-t~nP~W~e~f~~~~~~~-----~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYK-TLNPEWNKIFTFPIKDI-----HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecC-CcCCccCcEEEEEecCc-----CCEEEEEEEECCCC
Confidence 579999999999975 357899999999974 4678998875 79999999999998752 4789999999986
Q ss_pred CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEE
Q 035970 83 LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLL 135 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~ 135 (377)
..+++||++.++|.++..+. ..||+|..+. ++.+|+|.|++.|.
T Consensus 74 ~~~~~iG~~~~~l~~~~~~~---------~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNGE---------RKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred CCCceeeEEEEEHHHCCCCC---------ceEEECcccCCCCceeeEEEEEEEeC
Confidence 47899999999999986442 2699998653 46899999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-17 Score=135.69 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=93.5
Q ss_pred eEEEEEEEEeecCCCC--------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 6 RVLEISIVSGHDLALV--------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
+.|+|+|++|++|... .+.+||||++.+++ ...+|++.++ +.||.|||.|.|.+.+. ....|.|+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~-t~~P~W~e~f~~~v~~~----~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKE-NLNPKWNEVYEAVVDEV----PGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCC-CCCCcccceEEEEeCCC----CCCEEEEEE
Confidence 5799999999999743 25789999999985 6789998775 79999999999999753 357899999
Q ss_pred EEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 78 YAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 78 yD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
||++..+|++||.+.++|.++..... ...||+|.+. .+|.|+|.+.|
T Consensus 75 ~d~~~~~~~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~---~~G~~~~~~~~ 121 (121)
T cd08391 75 FDEDPDKDDFLGRLSIDLGSVEKKGF-------IDEWLPLEDV---KSGRLHLKLEW 121 (121)
T ss_pred EecCCCCCCcEEEEEEEHHHhcccCc-------cceEEECcCC---CCceEEEEEeC
Confidence 99987799999999999999875432 2479998743 68999988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=139.86 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=96.6
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
.+.+.|+|+|++|++|.. ..+.+||||++.++ ...++|+++++ +.||.|||+|.|.+.+. ....|.|+|||+
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-~~~~kT~vi~~-t~nP~Wne~f~f~v~~~----~~~~l~i~V~D~ 85 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-SQEHKTKVVSD-TLNPKWNSSMQFFVKDL----EQDVLCITVFDR 85 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-CEeeeccccCC-CCCCccCceEEEEecCc----cCCEEEEEEEEC
Confidence 467899999999999975 36899999999997 46789999875 79999999999999764 247899999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
+.+ .|++||.+.|+|.++...... ....-..++++ +++..|+|+|++.|
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKE--SKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhcccccc--CCCcEEEEecc---ccccceeEEEEEEe
Confidence 865 589999999999999864321 11212234444 47789999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=149.28 Aligned_cols=95 Identities=26% Similarity=0.425 Sum_probs=84.4
Q ss_pred CCCCCeEEEEEEEEeecCC--CCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 1 MVPPPRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
|..+.+.|+|.|++|.+|. +..+++||||++.++ .++++|++..+ +.||+|||.|.|.|.++ ...|.+.||
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-~q~lkT~~v~~-n~NPeWNe~ltf~v~d~-----~~~lkv~Vy 73 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-NQKLKTRVVYK-NLNPEWNEELTFTVKDP-----NTPLKVTVY 73 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEEC-CeeeeeeeecC-CCCCcccceEEEEecCC-----CceEEEEEE
Confidence 6678899999999999995 455899999999998 57899998865 79999999999999985 689999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCc
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~ 102 (377)
|+|.+ .|||+|.|.|+|..++...
T Consensus 74 D~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 74 DKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred eCCCCCcccccceeeeccHHHHHHh
Confidence 99976 6999999999999987754
|
|
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=135.93 Aligned_cols=117 Identities=22% Similarity=0.237 Sum_probs=97.8
Q ss_pred EEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-CCceeEE
Q 035970 12 IVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGS 90 (377)
Q Consensus 12 VISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~DdlIG~ 90 (377)
|++|++|.+..+.+||||+|++.. .+++|++.++ +.||+|||+|.|.+.... .....|.|+|||++.. .|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~Wne~f~f~~~~~~--~~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRG-VKKKTRVLEN-ELNPVWNETFEWPLAGSP--DPDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECC-EeeecceeCC-CcCCcccceEEEEeCCCc--CCCCEEEEEEEECCCCCCCceEEE
Confidence 789999988778999999999974 5789999875 699999999999997542 2468899999999865 6899999
Q ss_pred EEEEcccccCCcccCCCCCceeEEEEeeCCCCC-cceEEEEEEEEEecCC
Q 035970 91 VRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR-PQGILNLGITLLDNTM 139 (377)
Q Consensus 91 a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk-~~G~L~LsV~f~p~s~ 139 (377)
+.++|.++..... ...|++|.+.+++ ..|+|++.+.|.+...
T Consensus 78 ~~~~l~~l~~~~~-------~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 78 ATVSLQDLVSEGL-------LEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEhhHcccCCc-------eEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 9999999876532 3579999876665 5899999999998863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-17 Score=138.71 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=83.0
Q ss_pred EEEEEEEEeecCCCC-CCCCCeEEEEEEC----CC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 7 VLEISIVSGHDLALV-SKSMKTYSVAWVD----PE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 7 ~LeVtVISAkdL~~~-~g~~DPYVvV~L~----p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
.|.|+|++|++|+.. .|.+||||+|++. +. ++++|++.. ++.||+|||+|.|.|..... .....|.|.|||
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~~-~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKN-NNWSPKYNETFQFILGNEDD-PESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEec-CCCCCccCcEEEEEeeCcCC-CceeEEEEEEEE
Confidence 389999999999653 4789999999983 22 356898875 58999999999999975310 134679999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
++.. .|++||++.|||.++..... ...|++|.++
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~~~~-------~~~w~~L~~~ 113 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQAGS-------CACWLPLGRR 113 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcCCCc-------EEEEEECcCc
Confidence 9866 48999999999999986542 3579988754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-17 Score=140.84 Aligned_cols=101 Identities=19% Similarity=0.289 Sum_probs=84.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK 84 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~ 84 (377)
++.|.|+|++|++|.+. +..||||+|.++ .++.+|++.++ .||.|||+|.|.+... ...|.|+|||++.+.
T Consensus 1 m~~L~V~Vv~Ar~L~~~-~~~dPYV~Ik~g-~~k~kT~v~~~--~nP~WnE~F~F~~~~~-----~~~L~v~V~dkd~~~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAP-DKFNTYVTLKVQ-NVKSTTIAVRG--SQPCWEQDFMFEINRL-----DLGLVIELWNKGLIW 71 (127)
T ss_pred CceEEEEEEEeeCCCCC-CCCCCeEEEEEC-CEEeEeeECCC--CCCceeeEEEEEEcCC-----CCEEEEEEEeCCCcC
Confidence 36899999999999764 456999999997 47888998753 5999999999999763 455999999999889
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
|+|||++.|+|.++..+. ..+...||+|..
T Consensus 72 DD~lG~v~i~L~~v~~~~-----~~~~~~Wy~L~~ 101 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSN-----EEGPGEWLTLDS 101 (127)
T ss_pred CCceEEEEEEhHHcccCC-----CCCCCccEecCh
Confidence 999999999999998763 334468999984
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=136.69 Aligned_cols=112 Identities=22% Similarity=0.398 Sum_probs=91.5
Q ss_pred EEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC-
Q 035970 8 LEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK- 84 (377)
Q Consensus 8 LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~- 84 (377)
|+|+|++|++|+.. .+.+||||++++++...++|+++++ +.||.|||+|.|.+.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~------~~~l~i~V~d~~~~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP------SSIITIQVFDQKKFKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC------CCEEEEEEEECCCCCC
Confidence 89999999999753 5789999999997667889999865 7999999999999974 479999999998653
Q ss_pred --CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC----CCCcceEEEEEE
Q 035970 85 --DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP----SGRPQGILNLGI 132 (377)
Q Consensus 85 --DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~----sGk~~G~L~LsV 132 (377)
|+|||++.+++.++..... ....||+|+.. .+...|+|.+.+
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKD------TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCC------CccceeEeecCCCCCCceEeeEEEEEe
Confidence 5799999999999876432 12358888753 356789988875
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=134.87 Aligned_cols=119 Identities=16% Similarity=0.292 Sum_probs=95.7
Q ss_pred eEEEEEEEEeecCCC--C--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 6 RVLEISIVSGHDLAL--V--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 6 g~LeVtVISAkdL~~--~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
+.|.|+|++|++|.. . .+.+||||++.++ ..+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-~~~~kT~~~~~-t~~P~Wne~f~~~~~~~----~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-AQRFKTQTIPN-TLNPKWNYWCEFPIFSA----QNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-CEEEecceecC-CcCCccCCcEEEEecCC----CCCEEEEEEEECC
Confidence 579999999999964 4 5789999999997 46789998875 79999999999999863 3578999999998
Q ss_pred cC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC----CCcceEEEEEEEE
Q 035970 82 WL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS----GRPQGILNLGITL 134 (377)
Q Consensus 82 ~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s----Gk~~G~L~LsV~f 134 (377)
.+ .|++||.+.|+|.++..... ......||.|.... ...+|+|+|.+.+
T Consensus 75 ~~~~~~~lG~~~i~l~~~~~~~~----~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 75 RFAGKDYLGEFDIALEEVFADGK----TGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCcceEEEEEHHHhhcccc----cCccceeEEccCcccCccccccceEEEEEEC
Confidence 65 78999999999999874211 12235799988542 3589999998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=132.18 Aligned_cols=112 Identities=26% Similarity=0.372 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
+|+|+|++|++|+.. .+.+||||++.++ ..+.+|++.++ +.||.|||+|.|.+.+. ....|.|+|||++.+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-~~~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG-NEKYKSKVCSK-TLNPQWLEQFDLHLFDD----QSQILEIEVWDKDTGK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC-CEeEecccccC-CCCCceeEEEEEEecCC----CCCEEEEEEEECCCCC
Confidence 478999999999753 5789999999997 46788998765 79999999999998764 257899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
.|++||.+.++|.++..... ...||+|... .|.|++.+.+.
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~-------~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQT-------HSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCCCCc-------eEEEEEccCC----CcEEEEEEEec
Confidence 69999999999999875432 4679998744 58898888764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=134.46 Aligned_cols=113 Identities=22% Similarity=0.338 Sum_probs=92.4
Q ss_pred EEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-C
Q 035970 8 LEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-K 84 (377)
Q Consensus 8 LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~ 84 (377)
|+|+|++|++|... .+.+||||+|+++. .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++.+ .
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~~~v~d~~~~~~ 75 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKK-SCYPRWNEVFEFELMEG----ADSPLSVEVWDWDLVSK 75 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecC-CCCCccCcEEEEEcCCC----CCCEEEEEEEECCCCCC
Confidence 89999999999643 57899999999974 5788998875 79999999999999864 246899999999865 5
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeC------CCCCcceEEEEEEE
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR------PSGRPQGILNLGIT 133 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr------~sGk~~G~L~LsV~ 133 (377)
|++||.+.++|.++..... ...||.|.. ++++..|.|.|.|+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~-------~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQ-------EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CcEeEEEEEEHHHcccCCC-------CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 8999999999999865432 136888885 35678999999874
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=134.66 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=92.8
Q ss_pred EEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-C
Q 035970 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-K 84 (377)
Q Consensus 8 LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~ 84 (377)
|.|+|++|++|.. ..+.+||||++.+++....+|+++++ +.||.|||.|.|.+... ...|.|+|||++.+ .
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~-----~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPG-----FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCC-----CCEEEEEEEECCCCCC
Confidence 8999999999974 35789999999997544579999876 79999999999998752 46899999999965 6
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeC--CCCCcceEEEEEEE
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR--PSGRPQGILNLGIT 133 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr--~sGk~~G~L~LsV~ 133 (377)
|++||++.+++..+..... ....|++|.. +.+...|+|+|.++
T Consensus 76 d~~iG~~~~~~~~~~~~~~------~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPR------GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCC------CCCcEEECeeeCCCCccccEEEEEEE
Confidence 8999999999988764321 1246999864 55678999999876
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-17 Score=139.12 Aligned_cols=93 Identities=13% Similarity=0.315 Sum_probs=80.2
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCeEEEEEECCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
+..+.|.|+|++|++|+ ..+.+||||++++.+. .+++|+|.++ +.||+|||+|.|.|....+ ....|.|.|||
T Consensus 11 ~~~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l--~~~tL~~~V~d 86 (118)
T cd08677 11 KQKAELHVNILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEES--LDGTLTLTLRC 86 (118)
T ss_pred CcCCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHh--CCcEEEEEEEe
Confidence 45688999999999998 5567999999999752 5788999875 8999999999999987655 56789999999
Q ss_pred cCcC-CCceeEEEEEEccccc
Q 035970 80 AAWL-KDALIGSVRVLISHLF 99 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~ 99 (377)
+|.+ ++++||++.++++++.
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCCCCCCceEEEEEEcccccc
Confidence 9965 7999999999999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=142.16 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=83.9
Q ss_pred EEEEEEEEeecCCCCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccC----------CCCC-CCc
Q 035970 7 VLEISIVSGHDLALVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDR----------FLTD-ETS 71 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~----------~L~~-~~s 71 (377)
.|.|+|++|++|...+|.+||||+|.+.+. .+.+|+|+++ +.||+|||+|.|.+... ...+ ...
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 389999999999876789999999999753 5678998875 79999999999999511 0001 235
Q ss_pred eEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 72 AIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 72 ~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
.|.|.|||++.+ .|+|||++.|+|..+..... ....||+|...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~------~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAG------SHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCC------cCcceeecCCc
Confidence 799999999865 79999999999999876511 12479999854
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=133.29 Aligned_cols=115 Identities=22% Similarity=0.346 Sum_probs=93.3
Q ss_pred CeEEEEEEEEeecCCCCC------------CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCce
Q 035970 5 PRVLEISIVSGHDLALVS------------KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~------------g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~ 72 (377)
.+.|+|+|++|++|.... +.+||||++++++....+|++..+ +.||.|||+|.|.+.+ ...
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~------~~~ 75 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVHN------GRN 75 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcCC------CCE
Confidence 378999999999996431 478999999998655578998765 7999999999999974 478
Q ss_pred EEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEe
Q 035970 73 IMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLD 136 (377)
Q Consensus 73 L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p 136 (377)
|.|+|||++.+ .|++||.+.++|.++..... .....||+|. ++|.|+|.+.+..
T Consensus 76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~-----~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAAIGPDDFVANCTISFEDLIQRGS-----GSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCCCCCCceEEEEEEEhHHhcccCC-----CcccEEEEcc-----CCcEEEEEEEEec
Confidence 99999998855 68999999999999887311 1135799886 5799999998865
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=136.31 Aligned_cols=103 Identities=17% Similarity=0.300 Sum_probs=82.8
Q ss_pred CeEEEEEEEEeecCCCC-CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEe-ccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLALV-SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRV-DDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V-~~~~L~~~~s~L~VeVy 78 (377)
.+.|.|+|++|++|... .+.+||||++++.+. .+.+|+++++ +.||.|||+|.|.+ +...+ ....|.|+||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l--~~~~L~~~V~ 88 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDL--QQRVLQVSVW 88 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHh--CCCEEEEEEE
Confidence 46899999999999643 678999999999753 4688999875 79999999999997 33222 4578999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
|++.+ ++++||++.|+|.++..... ...||+|
T Consensus 89 d~d~~~~~~~lG~~~i~l~~l~~~~~-------~~~W~~L 121 (122)
T cd08381 89 SHDSLVENEFLGGVCIPLKKLDLSQE-------TEKWYPL 121 (122)
T ss_pred eCCCCcCCcEEEEEEEeccccccCCC-------ccceEEC
Confidence 99865 69999999999999875432 2468875
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=134.34 Aligned_cols=105 Identities=18% Similarity=0.337 Sum_probs=85.1
Q ss_pred CCCeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
+..+.|.|+|++|+||... .+.+||||++++.|. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l--~~~~L~~ 88 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQL--ETRTLQL 88 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHh--CCCEEEE
Confidence 4567899999999999643 378999999999653 3678998765 7999999999999976544 3568999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
+|||++.+ ++++||++.|+|.++..... ...||+|
T Consensus 89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~-------~~~w~~l 124 (125)
T cd04029 89 SVWHYDRFGRNTFLGEVEIPLDSWNFDSQ-------HEECLPL 124 (125)
T ss_pred EEEECCCCCCCcEEEEEEEeCCcccccCC-------cccEEEC
Confidence 99999865 68999999999999876532 2468876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=135.23 Aligned_cols=107 Identities=22% Similarity=0.347 Sum_probs=85.6
Q ss_pred CCeEEEEEEEEeecCCCC--C-CCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--S-KSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~-g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
..+.|.|+|++|+||... . +.+||||++++.|. .+.+|++.++ +.||+|||+|.|.+....| ....|.|.
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l--~~~~L~v~ 89 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLL--SSRQLQVS 89 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHh--CCcEEEEE
Confidence 457899999999999643 3 78999999999754 3678998865 8999999999999976544 45789999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
|||.+.+ ++++||++.|+|.++..... ......||+|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDT----DSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCC----CccccceEEC
Confidence 9999864 68999999999999854321 1234578876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=129.61 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=86.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
.-.|+|+|++|++|. .+.+||||++++++ ++.+|++.++ +.||.|||+|.|.+..+........|.|+|||++.+
T Consensus 3 ~~~l~V~v~~a~~L~--~~~~dpyv~v~~~~-~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV--GGNIDPVVKVEVGG-QKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC--CCCCCCEEEEEECC-EeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 457999999999998 67899999999984 6778998764 789999999999976432101246899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
+|++||++.|+|+++..... ..+...||+|.+|
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~----~~~~~~w~~L~~~ 111 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPD----HAFLRKWLLLTDP 111 (111)
T ss_pred cCCccEEEEECCccccCCCC----CcceEEEEEeeCc
Confidence 68999999999999977643 2445679998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-16 Score=128.45 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=83.3
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK 84 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~ 84 (377)
.|.|+|++|++|+.. .+.+||||++.+++ ++++|++.++ +.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~v~~~~----~~~l~v~v~d~~~-- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKER-TNNPVWEEGFTFLVRNPE----NQELEIEVKDDKT-- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccC-CCCCcccceEEEEeCCCC----CCEEEEEEEECCC--
Confidence 489999999999754 57899999999985 7889998765 799999999999998742 4689999999886
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
|++||++.|+|.++.... ......||+|..
T Consensus 73 ~~~iG~~~i~l~~l~~~~-----~~~~~~w~~L~~ 102 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP-----DLTLDQPFPLDN 102 (105)
T ss_pred CCccEEEEEEHHHhhccc-----cceeeeeEecCC
Confidence 899999999999987653 122457998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=127.66 Aligned_cols=115 Identities=24% Similarity=0.338 Sum_probs=93.4
Q ss_pred eEEEEEEEEeecCCCC----CCCCCeEEEEEECC-----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 6 RVLEISIVSGHDLALV----SKSMKTYSVAWVDP-----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 6 g~LeVtVISAkdL~~~----~g~~DPYVvV~L~p-----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
-.|+|+|++|++|+.. .+..||||++++.+ ..+.+|+++.+++.||.|||+|.|.+..+ ....|.|+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~----~~~~l~~~ 77 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP----ELAFLRFV 77 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC----CeEEEEEE
Confidence 4699999999999753 46889999999942 35688998776555999999999998854 23679999
Q ss_pred EEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC--CcceEEEEEEEE
Q 035970 77 IYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG--RPQGILNLGITL 134 (377)
Q Consensus 77 VyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG--k~~G~L~LsV~f 134 (377)
|||++..+|++||++.++|.++..+ ..+++|+++.+ ...|.|.+.+++
T Consensus 78 V~d~~~~~~~~iG~~~~~l~~l~~g----------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 78 VYDEDSGDDDFLGQACLPLDSLRQG----------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEeCCCCCCcEeEEEEEEhHHhcCc----------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 9999866999999999999998554 25789998877 457888888875
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=127.26 Aligned_cols=111 Identities=24% Similarity=0.378 Sum_probs=92.0
Q ss_pred EEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-C
Q 035970 8 LEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-K 84 (377)
Q Consensus 8 LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~ 84 (377)
|+|+|++|++|... .+.+||||++.+++....+|+++.+ +.||.|||+|.|.+... ....|.|+|||++.. .
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~----~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSR----VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccC----CCCEEEEEEEeCCCCCC
Confidence 68999999999754 4689999999998666689998765 89999999999999753 357899999999865 6
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEE
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNL 130 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~L 130 (377)
|++||++.+++.++..... ...|++|...++...|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~-------~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEET-------TELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCCCc-------EEEEEECcCCCCccCceEEc
Confidence 8999999999999876422 35799998777888888764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=130.42 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=94.2
Q ss_pred EEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccC-----CCCCCCceEEEEEEE
Q 035970 7 VLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDR-----FLTDETSAIMIEIYA 79 (377)
Q Consensus 7 ~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~-----~L~~~~s~L~VeVyD 79 (377)
.|+|+|++|++|.. ..+.+||||+|.+. ..+.+|++.++ +.||.|||.|.|.+... .+......|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL-NQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC-CeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 58999999999964 46789999999997 46788999865 79999999999985321 011123578999999
Q ss_pred cCcC-CCceeEEEEE-EcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEec
Q 035970 80 AAWL-KDALIGSVRV-LISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDN 137 (377)
Q Consensus 80 ~d~~-~DdlIG~a~I-pLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~ 137 (377)
++.. .|++||++.+ |+..+.... .......|+.|. +.+..+|+|.|++.+++.
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~~----~~~~~~~W~~L~-~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLEE----DFPPKLQWFPIY-KGGQSAGELLAAFELIEV 134 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccCC----CCCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence 9865 6899999986 554443321 123356899997 446789999999999875
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-16 Score=130.18 Aligned_cols=106 Identities=17% Similarity=0.306 Sum_probs=86.6
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
++.+.|.|+|++|++|.. ..+.+||||++.+.+ ....+|++.++ +.||.|||+|.|.+....+ ....|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~i~V~ 89 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQEL--PKRTLEVLLY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHh--CCCEEEEEEE
Confidence 456899999999999974 357899999999953 45688998875 7999999999999876433 3468999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
|++.+ +|++||.+.|+|+++..... ...||.|.
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~~~-------~~~W~~l~ 123 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLSEK-------LDLWRKIQ 123 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCCCC-------cceEEECc
Confidence 99865 69999999999999976532 24788875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-16 Score=129.50 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=78.2
Q ss_pred eEEEEEEEEeecCCCCC------CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLALVS------KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~------g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
++|.|+|++|++|+... +.+||||+|.++ ..+++|+++++ +.||+|||.|.|.+.... ....|.|+|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-~~~~kT~v~~~-t~nPvWne~f~f~v~~~~---~~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-RRVFRTSWRRH-TLNPVFNERLAFEVYPHE---KNFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-CEeEeeeeecC-CCCCcccceEEEEEeCcc---CCCEEEEEEEE
Confidence 58999999999997531 358999999997 46789999876 799999999999987542 24589999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcc
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLT 103 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~ 103 (377)
++.+ .|++||++.++|.+|.....
T Consensus 76 ~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCCCCCcceEEEEEEHHHHHhhCC
Confidence 9965 69999999999999987654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=132.55 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=83.8
Q ss_pred CCeEEEEEEEEeecCCCC--C-CCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--S-KSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~-g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
..+.|.|+|++|+||+.. . +.+||||++++.|. .+.+|+|+++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l--~~~~L~~~ 89 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREEL--PTRVLNLS 89 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHh--CCCEEEEE
Confidence 346899999999999754 3 68999999999643 3578999875 7999999999999976544 45689999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
|||++.+ ++++||++.|+|.++..... ...||+|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~-------~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNT-------QPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCC-------CcceEEC
Confidence 9999865 68999999999999855422 2468876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=129.21 Aligned_cols=95 Identities=22% Similarity=0.387 Sum_probs=78.8
Q ss_pred eEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 6 RVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+.|+|+|++|++|+.. .+.+||||+++++. ..++|++.++++.||.|||+|.|.+..... .....|.|+|||.+.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~d~~~~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGW-GGDTKLILRIMDKDNF 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCccc-CCCCEEEEEEEECccC
Confidence 5799999999999753 47899999999974 567888876557999999999999987521 1246899999999865
Q ss_pred -CCceeEEEEEEcccccCCc
Q 035970 84 -KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~ 102 (377)
+|++||.+.|+|.++....
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEG 98 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCC
Confidence 6899999999999997654
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=129.04 Aligned_cols=110 Identities=22% Similarity=0.352 Sum_probs=89.1
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc--
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW-- 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~-- 82 (377)
.|+|+|++|++|+.. .+.+||||+|.++. .+.+|+++++ +.||.|||+|.|.+... ...|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~-t~~P~Wne~f~f~~~~~-----~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQ-NLNPVWNEKFHFECHNS-----SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecC-CCCCccceEEEEEecCC-----CCEEEEEEEECCCCc
Confidence 589999999999743 57899999999974 5778998765 79999999999998643 4689999999874
Q ss_pred ----------CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC--CcceEEEEEE
Q 035970 83 ----------LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG--RPQGILNLGI 132 (377)
Q Consensus 83 ----------~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG--k~~G~L~LsV 132 (377)
..|++||.+.+++.++... ...||.|...++ ..+|+|.|++
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~~---------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLSGE---------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHccCC---------CCeEEECccCCCCCcEeEEEEEEC
Confidence 2589999999999987432 137999986443 5899999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=135.07 Aligned_cols=103 Identities=14% Similarity=0.226 Sum_probs=83.8
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
.+.|+|+|++|+||... .+.+||||++++.+. .+.+|+++++ +.||+|||+|.|.+.. ....|.|+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l-----~~~~L~v~V 101 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSP-----TGKTLQVIV 101 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcC-----CCCEEEEEE
Confidence 46899999999999643 468999999999653 3789999865 8999999999999982 367899999
Q ss_pred E-EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 78 Y-AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 78 y-D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
| |++.+ +++|||++.|+|+.+..... ...||+|...
T Consensus 102 ~~d~~~~~~~~~iG~~~i~L~~l~~~~~-------~~~Wy~L~~~ 139 (146)
T cd04028 102 WGDYGRMDKKVFMGVAQILLDDLDLSNL-------VIGWYKLFPT 139 (146)
T ss_pred EeCCCCCCCCceEEEEEEEcccccCCCC-------ceeEEecCCc
Confidence 9 56654 68999999999999854422 2479999854
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=128.02 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=77.5
Q ss_pred eEEEEEEEEeecCCC--CC-CCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLAL--VS-KSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~--~~-g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
++|+|+|++|++|.. .. +.+||||+|++.+ ....+|+++++ +.||+|||+|.|.+....+ .....|.|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEV-KAGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhc-cCCCEEEEEEEeC
Confidence 589999999999974 34 7899999999954 34679999876 7999999999998875322 1246899999999
Q ss_pred CcC-CCceeEEEEEEcccccCC
Q 035970 81 AWL-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~ 101 (377)
+.+ .|++||++.++|.++...
T Consensus 79 d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCCCcceEEEEEHHHHhcC
Confidence 965 689999999999999754
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=128.59 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=84.1
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
..+.|+|+|++|++|+.. .+.+||||++.+.+ ..+++|++.++ +.||+|||+|.|.+....+ ....|.|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l--~~~~l~i~v 90 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEEL--KRRTLDVAV 90 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHh--cCCEEEEEE
Confidence 457899999999999754 47899999999964 35789999875 7899999999999875433 346899999
Q ss_pred EEcCcC---CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 78 YAAAWL---KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 78 yD~d~~---~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
||.+.+ .|++||.+.|+|.++..... ...||.|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~-------~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKG-------FTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCC-------ccceEEC
Confidence 999853 68999999999999855432 2468876
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=128.46 Aligned_cols=105 Identities=24% Similarity=0.374 Sum_probs=83.8
Q ss_pred CCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..+.|+|+|++|++|.. ..+.+||||++.+.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~V~d 90 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSEL--GNKTLVFSVYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHh--CCCEEEEEEEe
Confidence 45789999999999974 3578999999999653 4678998765 7999999999999875333 34689999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
++.+ .|++||++.|+|.++..+.. ...|+.|.
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~-------~~~W~~l~ 123 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHV-------TEEWRDLE 123 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCC-------cceEEEcc
Confidence 9865 68999999999999855322 34688763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=125.22 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=91.8
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
.|.|+|++|++|+.. .+.+||||++.+.+. ...+|++.++ +.||.|||+|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~----~~~~L~i~v~d~d~ 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAG----EPLWISATVWDRSF 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCC----CCCEEEEEEEECCC
Confidence 689999999999753 578999999998643 4578998865 79999999999999863 24789999999986
Q ss_pred C-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEec
Q 035970 83 L-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDN 137 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~ 137 (377)
+ .+++||++.++|..+..... ......|+.|. ++|.|+|.+.+...
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~----~~~~~~w~~l~-----~~g~i~l~~~~~~~ 123 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDD----GLPREIWLDLD-----TQGRLLLRVSMEGE 123 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCC----CCCceEEEEcC-----CCCeEEEEEEEeee
Confidence 5 68999999999987643310 12245799885 26888888887543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=131.96 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=81.2
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC-----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE-----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~-----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
+..+.|.|+|++|+||... .+.+||||++++.|+ .+++|+|.++ +.||+|||+|.|+|....| ....|.|
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L--~~~~L~~ 87 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKL--YQKTLQV 87 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHh--hcCEEEE
Confidence 3467899999999999754 578999999999754 3688998875 8999999999999987655 5689999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCC
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~ 101 (377)
.||+.+.+ ++++||.+.|+|.++...
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCC
Confidence 99999865 689999999999998443
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-15 Score=133.30 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=96.4
Q ss_pred EEEEEEEEeecCCCC----CCCCCeEEEEEE----CCCCeEEeEeeCCCCCCCeeeeEEEEEeccCC--CC--CCCceEE
Q 035970 7 VLEISIVSGHDLALV----SKSMKTYSVAWV----DPERKLTTRVDQNGLNNPSWNEKFVFRVDDRF--LT--DETSAIM 74 (377)
Q Consensus 7 ~LeVtVISAkdL~~~----~g~~DPYVvV~L----~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~--L~--~~~s~L~ 74 (377)
.++|+|+.|.+++.+ .+.+||||++++ ...++.+|+|+++ +.||+|||+|.|.|+... ++ .....|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 467888888886422 467999999997 2346889999875 899999999999997541 00 1345799
Q ss_pred EEEEEcCcC--CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 75 IEIYAAAWL--KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 75 VeVyD~d~~--~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
|+|||++.+ .|++||++.|+|..+..... ...+++|.+......|.|++.|++..+.
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-------~~~~~~L~~~~k~~Gg~l~v~ir~r~p~ 140 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCE-------IHESVDLMDGRKATGGKLEVKVRLREPL 140 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEcccccccCc-------ceEEEEhhhCCCCcCCEEEEEEEecCCC
Confidence 999999853 69999999999999866532 2358898876667889999999997664
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=130.75 Aligned_cols=102 Identities=16% Similarity=0.272 Sum_probs=81.5
Q ss_pred CeEEEEEEEEeecCCCC-CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 5 PRVLEISIVSGHDLALV-SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
.+.|+|+|++|+||... .+.+||||++++.|. .+.+|++.++ +.||+|||+|.|.+....+ ...|.|+||+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~---~~~l~v~V~~ 86 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDY---QKRLLVTVWN 86 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHh---CCEEEEEEEC
Confidence 57899999999999644 578999999999763 3668998865 7999999999999876433 3468899999
Q ss_pred cCcC--CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 80 AAWL--KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 80 ~d~~--~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
++.. ++++||.+.|+|.++..+.. ...||.|
T Consensus 87 ~~~~~~~~~~lG~~~i~l~~~~~~~~-------~~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMSFGVKSIVNQKE-------ISGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEEecHHHhccCcc-------ccceEeC
Confidence 8854 47899999999999975422 2468865
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=126.80 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=84.0
Q ss_pred EEEEEEEeecCCCC---CCCCCeEEEEEECCCCeEEeEeeCCCCCCCee-eeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 8 LEISIVSGHDLALV---SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSW-NEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 8 LeVtVISAkdL~~~---~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~W-NEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
|+|+|++|++|+.. .+.+||||++.+++ .+.+|+++++ +.||.| ||+|.|.+....+ ....|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l--~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKK-SLNPVWNSEWFRFEVDDEEL--QDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecC-CCCCcccCcEEEEEcChHHc--CCCeEEEEEEeCCCC
Confidence 68999999999743 46889999999985 7889999875 799999 9999999986433 246899999999975
Q ss_pred -CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 84 -KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
+|++||++.++|.++..... ......||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~----~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDS----VSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCC----ccccCCeEEccc
Confidence 58999999999999977421 112346988864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=123.26 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=85.3
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-CCc
Q 035970 8 LEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KDA 86 (377)
Q Consensus 8 LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~Dd 86 (377)
|.|+|++|++|+.. +.+||||++++++....+|++..+ .||.|||+|.|.+....+ ....|.|.+||.+.. .+.
T Consensus 2 L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~--~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDV--TFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC-CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccc--cEEEEEEEEEecccCCCee
Confidence 78999999999876 889999999998645578998754 899999999999986432 235788888887754 355
Q ss_pred eeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEE
Q 035970 87 LIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITL 134 (377)
Q Consensus 87 lIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f 134 (377)
++|. ++|..+..... ...||+|...+ +...|+|+|.++|
T Consensus 77 ~~g~--v~l~~~~~~~~-------~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGK--VALSKLDLGQG-------KDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEE--EEecCcCCCCc-------ceeEEECccCCCCCCcCceEEEEEEC
Confidence 6665 55555443321 34799997543 4679999999976
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=126.37 Aligned_cols=105 Identities=20% Similarity=0.334 Sum_probs=83.6
Q ss_pred CCCeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
...+.|.|+|++|+||+.. .+.+||||++.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l--~~~~l~i 87 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQL--ETRTLQL 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHh--CCCEEEE
Confidence 3467899999999999743 468999999998543 4678998764 8999999999999886433 3468999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
+|||++.+ ++++||.+.++|.++..... ...||+|
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~-------~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFGRNTFLGEVEIPLDSWDLDSQ-------QSEWYPL 123 (123)
T ss_pred EEEeCCCCcCCceeeEEEEecccccccCC-------CccEEEC
Confidence 99999854 68999999999999854322 2468875
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=124.33 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=92.8
Q ss_pred eEEEEEEEEeecCCC-CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 6 RVLEISIVSGHDLAL-VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~-~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
..|+|+|++|+.+.. ..+.+||||+++++.....+|++..+ +.||.|||+|.|.+.. ...|.|+|||++..
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~------~~~l~~~V~d~~~~~ 74 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP------QSTLEFKVWSHHTLK 74 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC------CCEEEEEEEeCCCCC
Confidence 479999999994432 25789999999998544789998764 7999999999999864 46899999999865
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNLGI 132 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~LsV 132 (377)
.|++||++.++|.++...... .......|+++.+++ +...|.|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNG--KLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCC--CccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 689999999999998765321 112134688888654 47899998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-15 Score=126.45 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=82.3
Q ss_pred CCeEEEEEEEEeecCCCC--C-CCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEE-EeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--S-KSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVF-RVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~-g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F-~V~~~~L~~~~s~L~VeV 77 (377)
....|.|+|++|++|+.. . +.+||||++.+.+. ++.+|+++++ +.||+|||+|.| .++...+ ....|.|+|
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~--~~~~L~~~V 90 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQL--QDLSLHFAV 90 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHh--CCCEEEEEE
Confidence 457899999999999753 3 78999999999643 4678999875 799999999999 4554322 345799999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
||++.+ +|++||++.|+|.++..... .. ..+|++|.
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~----~~-~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNE----GE-LLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCC----ce-EEEEEecc
Confidence 999855 69999999999999865421 11 34677653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-15 Score=124.59 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=84.5
Q ss_pred eEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 6 RVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+.|+|+|++|++|++. .+.+||||+|+++...+.+|++..+ +.||.|||.|.|.+... ...|.|+|||++.+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~-----~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSP-----NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCC-----CCEEEEEEEECCCC
Confidence 5799999999999764 5799999999997555688888764 79999999999998753 46899999999865
Q ss_pred -CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 84 -KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
.|++||++.++|.++..... ..||.|.+.+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~~~--------~~~~~~~~~~ 105 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKKNE--------DGKYVEYDDE 105 (120)
T ss_pred CCCCeeeEEEEeHHHhhCCCC--------CceEEecCCC
Confidence 58899999999999987621 3588877654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-15 Score=123.77 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=83.8
Q ss_pred CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCC
Q 035970 22 SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGT 101 (377)
Q Consensus 22 ~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~ 101 (377)
+|.+||||+|.++.....+|+++.+ +.||.|||.|.|.+.+. ....|.|+|||++.++|++||.+.|+|.++...
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDR----RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA 84 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCc----CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh
Confidence 5789999999998655678998765 79999999999999764 257899999999966999999999999998654
Q ss_pred cccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEec
Q 035970 102 LTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDN 137 (377)
Q Consensus 102 ~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~ 137 (377)
.. ....||+|.. ..+|+|+|.+.|.|.
T Consensus 85 ~~------~~~~w~~L~~---~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TS------VGQQWFPLSG---NGQGRIRISALWKPV 111 (111)
T ss_pred hh------ccceeEECCC---CCCCEEEEEEEEecC
Confidence 22 1247998864 578999999999873
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=124.19 Aligned_cols=103 Identities=15% Similarity=0.245 Sum_probs=80.5
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEecc-CCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDD-RFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~-~~L~~~~s~L~Ve 76 (377)
..+.|.|+|++|++|... .+.+||||+|++.+ ..+.+|+++++ +.||+|||+|.|.+.. ..+ ....|.|+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~l~~~ 90 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETL--KERTLEVT 90 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHh--CCCEEEEE
Confidence 357899999999999653 57899999999975 25678998765 7999999999998543 222 34689999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEe
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQV 117 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~L 117 (377)
|||++.+ .|++||++.++|.+..... ...||+|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~~~--------~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALLDD--------EPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccccC--------CcceEEC
Confidence 9999865 6899999999999832221 1368876
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-15 Score=126.16 Aligned_cols=105 Identities=26% Similarity=0.391 Sum_probs=84.1
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~VeV 77 (377)
+..+.|.|+|++|+||... .+..||||++.+.+. ++.+|+|.+ + .||+|||+|.|+ ++...+ ....|.|.|
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l--~~~~L~~~V 88 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEEL--NNMALRFRL 88 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHh--ccCEEEEEE
Confidence 3457899999999999754 578899999988653 577899875 4 899999999998 765444 467899999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
||++.+ ++++||++.|+|+++..... ...||+|.
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~-------~~~w~~L~ 123 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGE-------TTVWLTLE 123 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCC-------ceEEEeCC
Confidence 999865 69999999999999955422 35788774
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=125.51 Aligned_cols=115 Identities=18% Similarity=0.274 Sum_probs=90.7
Q ss_pred EEEEEEEEeecCC-CCCCCCCeEEEEEECCC------------CeEEeEeeCCCCCCCee-eeEEEEEeccCCCCCCCce
Q 035970 7 VLEISIVSGHDLA-LVSKSMKTYSVAWVDPE------------RKLTTRVDQNGLNNPSW-NEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 7 ~LeVtVISAkdL~-~~~g~~DPYVvV~L~p~------------~k~rTrV~k~gg~NP~W-NEtF~F~V~~~~L~~~~s~ 72 (377)
+..|++++|++|+ +..+.+||||++.+.+. ++++|+++++ +.||+| ||+|.|.+.. ...
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~------~~~ 74 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP------TDV 74 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC------CCE
Confidence 4578999999996 34589999999999642 3689999865 799999 9999999964 368
Q ss_pred EEEEEEEcCcC----CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC--CCCcceEEEEEE
Q 035970 73 IMIEIYAAAWL----KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP--SGRPQGILNLGI 132 (377)
Q Consensus 73 L~VeVyD~d~~----~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~--sGk~~G~L~LsV 132 (377)
|.|+|||++.. .|++||.+.|+|.++..... ......+|+|.+. .+..+|+|.|.+
T Consensus 75 L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~----~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 75 LEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHA----IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEEecCCCCCccCCceEEEEEEEHHHhccccc----CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99999997632 37999999999999987642 1224578888754 347899998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=129.44 Aligned_cols=109 Identities=21% Similarity=0.228 Sum_probs=83.8
Q ss_pred EEEEEEEEeecCCCC--C--------------CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCC
Q 035970 7 VLEISIVSGHDLALV--S--------------KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDET 70 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~--------------g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~ 70 (377)
.|+|+|++|++|+.. . +.+||||+|.+++ .+.+|+++++ +.||+|||+|.|++..+.+ .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~---~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKN-SYNPEWNEQIVFPEMFPPL---C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcC-CCCCCcceEEEEEeeCCCc---C
Confidence 389999999999753 1 3689999999985 5678999875 7999999999999765432 4
Q ss_pred ceEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 71 SAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 71 s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
..|.|+|||++.. +|++||++.|+|.++........-......||.+..+
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 6899999999965 8999999999999987654310001123578888743
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=122.60 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=83.0
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccC-CCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDR-FLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~-~L~~~~s~L~VeV 77 (377)
.+...|+|+|++|++|+.. .+.+||||++.+.+ ..+.+|++.++ +.||.|||+|.|.+... .+ ....|.|+|
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l--~~~~l~~~v 89 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKL--QQRVLYLQV 89 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHh--CCCEEEEEE
Confidence 3467899999999999643 57899999999953 35689999875 79999999999985321 12 346799999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
||++.+ .+++||.+.|+|.++..... ...|+.|.
T Consensus 90 ~d~d~~~~~~~iG~~~i~l~~l~~~~~-------~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFSRNDPIGEVSLPLNKVDLTEE-------QTFWKDLK 124 (125)
T ss_pred EeCCCCcCCcEeeEEEEecccccCCCC-------cceEEecC
Confidence 999865 68999999999999875432 34688764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=125.63 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=79.1
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC------CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP------ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p------~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
..+.|.|+|++|++|+.. .+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+...........|.|
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence 457899999999999753 57899999999863 24689999875 7999999999999875321113568999
Q ss_pred EEEEcCcCC-CceeEEEEEEcccccCC
Q 035970 76 EIYAAAWLK-DALIGSVRVLISHLFGT 101 (377)
Q Consensus 76 eVyD~d~~~-DdlIG~a~IpLs~L~~~ 101 (377)
+|||++.++ |++||++.|+|.++..-
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 999999765 99999999999998753
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=155.04 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=87.5
Q ss_pred CCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCCcc
Q 035970 24 SMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLT 103 (377)
Q Consensus 24 ~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~~ 103 (377)
++||||+|.++.....+|+|.++ +.||+|||+|.|.|... ...|.|+|||++.+++++||.+.|||.+|..+..
T Consensus 76 tSDPYV~I~Lg~~rv~RTrVi~n-~~NPvWNE~F~f~vah~-----~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~ 149 (868)
T PLN03008 76 TSDPYVTVVVPQATLARTRVLKN-SQEPLWDEKFNISIAHP-----FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER 149 (868)
T ss_pred CCCceEEEEECCcceeeEEeCCC-CCCCCcceeEEEEecCC-----CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc
Confidence 56999999997655679999865 78999999999999863 4689999999999999999999999999987643
Q ss_pred cCCCCCceeEEEEeeCCCCC---cceEEEEEEEEEecC
Q 035970 104 HNSSSSTRYVALQVRRPSGR---PQGILNLGITLLDNT 138 (377)
Q Consensus 104 ~~~~~~~~~v~y~Lrr~sGk---~~G~L~LsV~f~p~s 138 (377)
...|++|....++ ..+.|+|++.|.|..
T Consensus 150 -------vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 150 -------ISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred -------eEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 3579999987664 467999999999875
|
|
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-14 Score=125.16 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=94.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC-cC
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA-WL 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d-~~ 83 (377)
...|.|.|+.|++|+.. -+|||.|.+++....||+|..+ +.||.|||.|.|..... ...|.|.||..+ ..
T Consensus 10 ~~sL~v~V~EAk~Lp~~---~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~-----~~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK---KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPP-----VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCc---CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCc-----ccEEEEEEEEccCcc
Confidence 46799999999999653 3899999999765679999865 78999999999976542 367999998664 22
Q ss_pred ----CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc----------ceEEEEEEEEEecC
Q 035970 84 ----KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP----------QGILNLGITLLDNT 138 (377)
Q Consensus 84 ----~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~----------~G~L~LsV~f~p~s 138 (377)
+|++||.+.||+.++..+.. ...||+|...++.+ .+.|+|+++|.+..
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~-------ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQF-------VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCc-------ccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 68999999999999985432 35799999765543 46999999999874
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=120.10 Aligned_cols=106 Identities=20% Similarity=0.339 Sum_probs=84.6
Q ss_pred CCCeEEEEEEEEeecCCCC---CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV---SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
++.+.|.|+|++|++|+.. .+.+||||++++.+ ....+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l--~~~~l~i~v 87 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKEL--QRRTLRLSV 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHh--cccEEEEEE
Confidence 4567899999999999753 46889999999854 34578988765 7999999999999876433 246899999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
||++.. .+++||++.|+|.++..... ...|++|.
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~-------~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKG-------GVVWRDLE 122 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCC-------ceEEEeCC
Confidence 999865 58999999999999876533 24788764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=125.16 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=76.0
Q ss_pred CCeEEEEEEEEeecCCC-CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 4 PPRVLEISIVSGHDLAL-VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~-~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
..+.|+|+|++|++|.. ..+.+||||+|++++ .+++|+++++ +.||+|||+|.|...... ....|.|+|||++.
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~-~~~kT~vi~~-t~nPvWNE~F~f~~~~~~---~~~~L~v~V~D~d~ 100 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGG-QEKRTEVIWN-NNNPRWNATFDFGSVELS---PGGKLRFEVWDRDN 100 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECC-ccccCceecC-CCCCcCCCEEEEecccCC---CCCEEEEEEEeCCC
Confidence 35899999999999963 357889999999975 4889999875 799999999999753321 35789999999997
Q ss_pred C-CCceeEEEEEEccccc
Q 035970 83 L-KDALIGSVRVLISHLF 99 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~ 99 (377)
+ .|++||++.++|....
T Consensus 101 ~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCeeEEEEEEecCCc
Confidence 6 7999999999998655
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=128.04 Aligned_cols=90 Identities=27% Similarity=0.490 Sum_probs=76.5
Q ss_pred CCCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC----------------------------CeEEeEeeCCCCCCC
Q 035970 2 VPPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----------------------------RKLTTRVDQNGLNNP 51 (377)
Q Consensus 2 ~~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~----------------------------~k~rTrV~k~gg~NP 51 (377)
.+|...|.|+|++|++|.. ..+.+||||+|.+.+. ...+|++..+ +.||
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP 102 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNP 102 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCC
Confidence 4678999999999999964 4688999999998642 2368888765 7999
Q ss_pred eeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEccccc
Q 035970 52 SWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLF 99 (377)
Q Consensus 52 ~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~ 99 (377)
.|||+|.|.+... ....|.|+|||++ |++||.+.|+++++.
T Consensus 103 ~WnE~F~f~v~~~----~~~~L~i~V~D~d---d~~IG~v~i~l~~l~ 143 (153)
T cd08676 103 VWNETFRFEVEDV----SNDQLHLDIWDHD---DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccccEEEEEeccC----CCCEEEEEEEecC---CCeEEEEEEEHHHhC
Confidence 9999999999753 2578999999988 899999999999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=123.79 Aligned_cols=90 Identities=26% Similarity=0.449 Sum_probs=77.7
Q ss_pred eEEEEEEEEeecCCCC-CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-
Q 035970 6 RVLEISIVSGHDLALV-SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL- 83 (377)
Q Consensus 6 g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~- 83 (377)
+.|.|+|++|++|+.. .+.+||||++.++ .++.+|++.++ +.||+|||+|.|.+.++ ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g-~~~~kT~vvk~-t~nP~WnE~f~f~i~~~-----~~~l~~~V~D~d~~~ 74 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLG-NQKVKTRVIKK-NLNPVWNEELTLSVPNP-----MAPLKLEVFDKDTFS 74 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEEC-CEEEEeeeEcC-CCCCeecccEEEEecCC-----CCEEEEEEEECCCCC
Confidence 7899999999999632 2789999999997 46889999875 79999999999999864 57899999999965
Q ss_pred CCceeEEEEEEcccccCCc
Q 035970 84 KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~ 102 (377)
.|++||++.++|.++....
T Consensus 75 ~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 75 KDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCEEEEEEEEHHHhhhhh
Confidence 6899999999999987653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=126.81 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=75.9
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+....|.|+|++|+||... .+.+||||++++.++ .+.+|+|.++ +.||+|||+|.|.|+...+ ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l--~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVL--QDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHh--CCcEEEEE
Confidence 4467899999999999753 578999999999653 2567888765 7999999999999986544 56789999
Q ss_pred EEEcCc-CCCceeEEEEEEccc
Q 035970 77 IYAAAW-LKDALIGSVRVLISH 97 (377)
Q Consensus 77 VyD~d~-~~DdlIG~a~IpLs~ 97 (377)
|||++. .++++||++.|+...
T Consensus 89 V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 89 VAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EEeCCCCCCCCeeEEEEECCCC
Confidence 999985 579999999997654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=126.75 Aligned_cols=92 Identities=16% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCCeEEEEEEEEeecCCCCC----CCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEE
Q 035970 3 PPPRVLEISIVSGHDLALVS----KSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIM 74 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~~----g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~ 74 (377)
+..+.|.|+|++|+||.... +.+||||+|++.+. .+.+|++.++ +.||+|||.|.|.|+...| ....|.
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L--~~~~L~ 88 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELL--AASSVE 88 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHh--CccEEE
Confidence 45688999999999997542 45899999999753 3568998765 8999999999999987655 467899
Q ss_pred EEEEEcCcC-CCceeEEEEEEccc
Q 035970 75 IEIYAAAWL-KDALIGSVRVLISH 97 (377)
Q Consensus 75 VeVyD~d~~-~DdlIG~a~IpLs~ 97 (377)
|+|||++.+ ++++||.+.+++..
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC
Confidence 999999865 69999999999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=123.35 Aligned_cols=105 Identities=22% Similarity=0.349 Sum_probs=84.3
Q ss_pred EEEEEEEeecCCCC-CCCCCeEEEEEECC---CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC-----------CCCce
Q 035970 8 LEISIVSGHDLALV-SKSMKTYSVAWVDP---ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT-----------DETSA 72 (377)
Q Consensus 8 LeVtVISAkdL~~~-~g~~DPYVvV~L~p---~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~-----------~~~s~ 72 (377)
|+|+|++|++|... .+.+||||+|+++. ..+++|+++++ +.||.|||+|.|.+...... .....
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999755 57899999999974 46789999875 79999999999998764100 03468
Q ss_pred EEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 73 IMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 73 L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|.|+|||.+.+ .++|||++.|+|.++..... ...||+|...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~-------~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGS-------HQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCc-------ccceEecCCc
Confidence 99999999876 79999999999999875432 2479988864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=125.38 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=83.3
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
..+.|.|+|++|++|... .+.+||||++.+.+. .+.+|+|.++ +.||.|||+|.|.+....+ ....|.|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~--~~~~l~~~v 89 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEEL--EDISVEFLV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHh--CCCEEEEEE
Confidence 457899999999999753 578999999998643 2567888765 7999999999999875433 356799999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcc
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQ 125 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~ 125 (377)
||++.+ ++++||++.|++...... ...|+.+.+..+++.
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~~~~~---------~~~w~~l~~~~~~~i 129 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKASGSG---------GHHWKEVCNPPRRQI 129 (136)
T ss_pred EECCCCCCCccEEEEEECCcCCCch---------HHHHHHHHhCCCCee
Confidence 999865 689999999999882111 124666655545543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-14 Score=120.22 Aligned_cols=92 Identities=21% Similarity=0.369 Sum_probs=76.2
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|... .+.+||||++.+.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|+
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l--~~~~l~~~ 86 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDL--AKKTLEIT 86 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHh--CCCEEEEE
Confidence 3468999999999999753 578999999999642 4678998875 8999999999999876433 34689999
Q ss_pred EEEcCcC-CCceeEEEEEEccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISH 97 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~ 97 (377)
|||++.. .|++||.+.|++..
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCC
Confidence 9999865 68999999999975
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-14 Score=125.70 Aligned_cols=95 Identities=18% Similarity=0.317 Sum_probs=77.3
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEec-cCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVD-DRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~-~~~L~~~~s~L~Ve 76 (377)
+.+.|.|+|++|++|+.. .+.+||||++++.+ ..+++|+|+++ +.||.|||+|.|.+. ...+ ....|.|+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l--~~~~L~i~ 101 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDL--SQACLELT 101 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHh--CCCEEEEE
Confidence 568999999999999754 57899999999853 25789999876 799999999999853 2222 24579999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCC
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~ 101 (377)
|||++.+ +|++||++.|++.++...
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccC
Confidence 9999866 599999999999997643
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.1e-14 Score=120.66 Aligned_cols=93 Identities=19% Similarity=0.301 Sum_probs=75.4
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|+|+|++|++|+.. .+.+||||+|.+.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|+
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~ 88 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQI--QKVHLIVT 88 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 5678999999999999753 578999999998532 3567887654 7999999999999875433 23579999
Q ss_pred EEEcCcC-CCceeEEEEEEcccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISHL 98 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L 98 (377)
|||++.+ .|++||++.|++...
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC
Confidence 9999865 689999999999763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-15 Score=152.52 Aligned_cols=214 Identities=16% Similarity=0.164 Sum_probs=144.9
Q ss_pred CeEEEEEEEEeecCC--CCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
...|+|+|..|+||. +++|-+||||.+.+.|+ .+++|++++. ++||+|||+|.|.+.+.. ....|.||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~D---kdrRlsiEvW 254 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSD---KDRRLSIEVW 254 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEeccccc---ccceeEEEEe
Confidence 357899999999996 45899999999999764 5678888875 899999999999998763 4688999999
Q ss_pred EcC-cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC-CC----------cceEEEEE-----EEEEecCC--
Q 035970 79 AAA-WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS-GR----------PQGILNLG-----ITLLDNTM-- 139 (377)
Q Consensus 79 D~d-~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s-Gk----------~~G~L~Ls-----V~f~p~s~-- 139 (377)
|+| +.+++|+|...+.+++|...+. ..||.|.... |. ..+...+. .+..+.+.
T Consensus 255 DWDrTsRNDFMGslSFgisEl~K~p~--------~GWyKlLsqeEGEyyNvp~~~~~~e~~~~lr~k~~~~~~~~~~s~p 326 (683)
T KOG0696|consen 255 DWDRTSRNDFMGSLSFGISELQKAPV--------DGWYKLLSQEEGEYYNVPVPDEDSEDNEELRQKFERARIGPGSSKP 326 (683)
T ss_pred cccccccccccceecccHHHHhhcch--------hhHHHHhhhhcCceeccCCCCchhhHHHHHHHHHhhcccCCCcCCC
Confidence 999 5689999999999999987643 2466665421 11 11111110 11111110
Q ss_pred --CCCCcchhhcCCCCccccccccccccc----CCCccccccccCCcchhhhhhhccccCCcchhhhhhccccccccccc
Q 035970 140 --RSMPLFAELCGAGANFSEVSSGANDVM----KPETTTAQNSKQSKDDQELERVLKPKDNSLSKAKLRRSQSDKTDLTS 213 (377)
Q Consensus 140 --~s~P~~~~~~~~~~~~~~~~vg~r~l~----g~~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~ 213 (377)
..+|.-...+....+-.--+..|-=|| |...|+|--...-+..-|+-+||| ||-.|-++.+-=|--|+-.|+-
T Consensus 327 ~~~~~~~~~~~~~~~~~d~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLk-KDViiQdDDvectm~EKrvLAL 405 (683)
T KOG0696|consen 327 EKKTMPTDSKFHNSSKRDRIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILK-KDVIIQDDDVECTMVEKRVLAL 405 (683)
T ss_pred CCCCCCCcccCCCCCcccceeecccceEEEeccCccceeeeecccCcchhhhhhhhc-cceeeecCcccceehhhhheec
Confidence 001111111100000001112222222 778888876666788999999999 6878877778778888888777
Q ss_pred cc---------cccCCCcccccccCCc
Q 035970 214 ED---------YSKNSSHQAQQPTGTG 231 (377)
Q Consensus 214 ~~---------~~~~~~~~~~~~~~~~ 231 (377)
.+ -+|||..+.|-|.-|+
T Consensus 406 ~~kppFL~qlHScFQTmDRLyFVMEyv 432 (683)
T KOG0696|consen 406 PGKPPFLVQLHSCFQTMDRLYFVMEYV 432 (683)
T ss_pred CCCCchHHHHHHHhhhhhheeeEEEEe
Confidence 66 4899999999999887
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=115.38 Aligned_cols=96 Identities=16% Similarity=0.304 Sum_probs=77.6
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~Ve 76 (377)
..+.|+|+|++|++|... .+.+||||++.+.+ ..+.+|+++++ +.||.|||+|.|. +....+ ....|.|+
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~--~~~~l~~~ 89 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDI--QRKTLRLL 89 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHh--CCCEEEEE
Confidence 457899999999999753 47899999999853 24689998875 7999999999996 433222 24689999
Q ss_pred EEEcCcCCCceeEEEEEEcccccCCc
Q 035970 77 IYAAAWLKDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 77 VyD~d~~~DdlIG~a~IpLs~L~~~~ 102 (377)
|||++.+++++||++.++|++|....
T Consensus 90 v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 90 VLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 99998668999999999999997653
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=119.96 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=72.5
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|.. ..+.+||||++.+.+. .+.+|+|.++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l--~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEEL--ENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHh--CCCEEEEE
Confidence 556899999999999975 3578999999998432 3578888765 8999999999999965433 23579999
Q ss_pred EEEcCc-CCCceeEEEEEEc
Q 035970 77 IYAAAW-LKDALIGSVRVLI 95 (377)
Q Consensus 77 VyD~d~-~~DdlIG~a~IpL 95 (377)
|||++. .+|++||++.|..
T Consensus 88 V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 88 VYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred EEeCCCCCCCcEEEEEEEcC
Confidence 999985 4799999988654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=121.08 Aligned_cols=93 Identities=19% Similarity=0.306 Sum_probs=76.7
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC-----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE-----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~-----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
+..+.|.|+|++|+||... .+..||||++.+.+. .+.+|++.++ +.||+|||+|.|.++...+ ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l--~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQL--SEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHh--CccEEEE
Confidence 3468899999999999754 578999999999652 2468998864 7999999999999986544 4578999
Q ss_pred EEEEcCc-CCCceeEEEEEEcccc
Q 035970 76 EIYAAAW-LKDALIGSVRVLISHL 98 (377)
Q Consensus 76 eVyD~d~-~~DdlIG~a~IpLs~L 98 (377)
.|||.+. .++++||++.|++...
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCC
Confidence 9999985 4799999999988754
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-14 Score=162.70 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=101.1
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
.-.|.|.|+|++|+||....+.+||||++.++...+.+|+|+++ +.||+|||.|.|.+.++.. +..|+|+|||++.
T Consensus 1977 ~~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~---~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPK---GQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCC---CCceEEEEEecCc
Confidence 34689999999999999656899999999998655778999986 7999999999999887642 5679999999998
Q ss_pred CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceE---EEEEEEEEe
Q 035970 83 LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGI---LNLGITLLD 136 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~---L~LsV~f~p 136 (377)
++++.+|.+.|+|.++..... ...||+|.+ +|+..|. |++.+.|.+
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~~-------~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEGT-------YSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCce-------eeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 888899999999999987654 246899884 3444565 888877653
|
|
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=120.40 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=75.8
Q ss_pred CCCeEEEEEEEEeecCCCC-CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV-SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
+..+.|.|+|++|+||... .+.+||||+|++.+. .+++|++.+ ++.||+|||+|.|.|+...+ ....|.|+|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l--~~~~L~~~V 88 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQL--DTASLSLSV 88 (137)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHh--CccEEEEEE
Confidence 3467899999999999643 567999999998753 356888876 48999999999999986555 457899999
Q ss_pred EEcCc-CCCceeEEEEEEcccc
Q 035970 78 YAAAW-LKDALIGSVRVLISHL 98 (377)
Q Consensus 78 yD~d~-~~DdlIG~a~IpLs~L 98 (377)
|+++. .++++||++.|+....
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred EeCCCCCCcceEEEEEECCccc
Confidence 99985 5789999999986543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=116.61 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=73.5
Q ss_pred EEEEEEEEeecCCCC--CCCCCeEEEEEECCC-CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 7 VLEISIVSGHDLALV--SKSMKTYSVAWVDPE-RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 7 ~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~-~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+|+|+|++|++|... .+.+||||++++++. ...+|+++++ +.||+|||+|.|.+..+ ....|.|+|||++.+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~----~~~~L~~~V~d~d~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLP----GNSILKISVMDYDLL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCC----CCCEEEEEEEECCCC
Confidence 489999999999753 578999999999753 2356777665 89999999999998643 357899999999865
Q ss_pred -CCceeEEEEEEcccccC
Q 035970 84 -KDALIGSVRVLISHLFG 100 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~ 100 (377)
.|++||++.|+|.+..-
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 79999999999998653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=118.85 Aligned_cols=91 Identities=24% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
++.+.|+|+|++|++|+.. .+.+||||+|.+.+. .+.+|++.+ ++.||+|||+|.|.+....+ ....|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~--~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENV--DNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 5678999999999999754 578999999998532 356888765 47999999999999875433 23569999
Q ss_pred EEEcCcC-CCceeEEEEEEcc
Q 035970 77 IYAAAWL-KDALIGSVRVLIS 96 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs 96 (377)
|||++.+ .|++||++.|++.
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EEECCCCCCCceeEEEEECCC
Confidence 9999865 5999999999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=139.11 Aligned_cols=126 Identities=22% Similarity=0.332 Sum_probs=101.8
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
....|.|+|+.|++|+.. .+.+||||++++.|+ .+.+|+|.++ +.||+|||+|.|.|....+ ....|.|.|||
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l--~~~~L~l~V~~ 241 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEEL--SNRVLHLSVYD 241 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHh--ccCEEEEEEEe
Confidence 356899999999999743 467999999999875 5789999875 8999999999999876544 57899999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC---CCCcceEEEEEEEEEecCC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP---SGRPQGILNLGITLLDNTM 139 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~---sGk~~G~L~LsV~f~p~s~ 139 (377)
.|.| ++++||++.++|..+..... ...|+.+... .....|+|.++++|.+...
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~-------~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLST-------TLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred cCCcccccEEEEEEecCcccccccc-------ceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 9965 79999999999888755421 2468888763 2223389999999999864
|
|
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=118.97 Aligned_cols=92 Identities=20% Similarity=0.380 Sum_probs=75.0
Q ss_pred CCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
..+.|.|+|++|++|.. ..+.+||||+|.+.+ ..+.+|++.++ +.||.|||+|.|.+....+ ....|.|+|
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~--~~~~l~~~v 89 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERL--RETTLIITV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHh--CCCEEEEEE
Confidence 45789999999999975 457899999999842 13568988765 7999999999999864322 246899999
Q ss_pred EEcCcC-CCceeEEEEEEcccc
Q 035970 78 YAAAWL-KDALIGSVRVLISHL 98 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L 98 (377)
||++.+ .|++||++.|++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 999865 689999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=115.96 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=84.0
Q ss_pred eEEEEEEEEeecCCC--CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLAL--VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
+.|.|+|++|++|+. ..+..||||+|.+.+ ..+.+|++.++ +.||.|||+|.|.+.... ....|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~---~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPAD---KDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchh---cCCEEEEEEEE
Confidence 679999999999974 357899999999963 25788998765 799999999999987532 24689999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
++.. .+++||++.++|.++.... ...||+|.+.
T Consensus 89 ~~~~~~~~~iG~~~~~l~~l~~~~--------~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTTRNDFMGSLSFGVSELIKMP--------VDGWYKLLNQ 122 (131)
T ss_pred CCCCCCcceeEEEEEeHHHhCcCc--------cCceEECcCc
Confidence 9865 6899999999999987541 2469999864
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=113.98 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=76.0
Q ss_pred EEEEeecCCCC--CCCCCeEEEEEECCCC------eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 11 SIVSGHDLALV--SKSMKTYSVAWVDPER------KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 11 tVISAkdL~~~--~g~~DPYVvV~L~p~~------k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
-.|+|++|... .+.+||||++++.+.. .++|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~----~~~~l~~~V~d~d~ 79 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFE----EVQKLRFEVYDVDS 79 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeE----eeeEEEEEEEEecC
Confidence 34899999643 5789999999997543 478999875 79999999999986533 24689999999985
Q ss_pred ----C-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 83 ----L-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 83 ----~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
+ +|++||++.+++.+|..... ...+++|.
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~l~~~~~-------~~~~~~l~ 113 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGEIVSSPG-------QKLTLPLK 113 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHHHhcCCC-------cEEEEEcc
Confidence 3 68999999999999976532 24677773
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=115.32 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
..+.|.|+|++|++|+.. .+.+||||++.+.+. .+.+|++..+ +.||.|||+|.|.+....+ ....|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l--~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQL--EEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHh--CCcEEEEEE
Confidence 457899999999999754 578999999999753 3568888764 7899999999999986433 357899999
Q ss_pred EEcCc-CCCceeEEEEEEccc
Q 035970 78 YAAAW-LKDALIGSVRVLISH 97 (377)
Q Consensus 78 yD~d~-~~DdlIG~a~IpLs~ 97 (377)
||.+. ..+++||.+.|+|.+
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred EecCCCCCCceeEEEEECCCC
Confidence 99986 478999999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=116.27 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=67.3
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC--
Q 035970 8 LEISIVSGHDLALVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA-- 81 (377)
Q Consensus 8 LeVtVISAkdL~~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d-- 81 (377)
|.|+|++|+||+ +.+||||++.+++. .+.+|+++++ +.||+|||+|.|.+.. ...|.|.|||+.
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~------s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG------SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC------CCEEEEEEEEcccc
Confidence 689999999996 45899999999753 4689999875 8999999999999974 469999999983
Q ss_pred -----c-CCCceeEEEEEEccc
Q 035970 82 -----W-LKDALIGSVRVLISH 97 (377)
Q Consensus 82 -----~-~~DdlIG~a~IpLs~ 97 (377)
. ..|+++|.+.|.|.-
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccCcccEEEEEEEEECH
Confidence 2 358999999988753
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-13 Score=117.10 Aligned_cols=94 Identities=14% Similarity=0.264 Sum_probs=74.8
Q ss_pred CCCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC--C--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 2 VPPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP--E--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 2 ~~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
.+..+.|.|+|++|++|+.. .+..||||+|++-+ . .+.+|+|.++...||+|||+|.|.|.... ....|.|
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~---~~v~l~v 86 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE---HGIQFLI 86 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh---heeEEEE
Confidence 35678899999999999864 35679999998852 2 46788887753357999999999998642 3467889
Q ss_pred EEEEcCcC-CCceeEEEEEEcccc
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHL 98 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L 98 (377)
+|||++.. ++++||++.++....
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccC
Confidence 99998854 799999999998764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=101.17 Aligned_cols=80 Identities=33% Similarity=0.542 Sum_probs=67.4
Q ss_pred EEEEEEEeecCCC--CCCCCCeEEEEEECCCC--eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPER--KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 8 LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~--k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
|+|+|++|++|.. ..+..+|||++.+.+.. .++|++..+ +.+|.|||+|.|.+....+ ..|.|+|||.+..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~----~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDL----DSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCG----TEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccc----cceEEEEEECCCC
Confidence 7999999999975 35689999999998644 488998875 6999999999999877643 4599999999976
Q ss_pred C-CceeEEEE
Q 035970 84 K-DALIGSVR 92 (377)
Q Consensus 84 ~-DdlIG~a~ 92 (377)
+ |++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5 99999874
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=102.85 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=69.8
Q ss_pred EEEEEeecCCCC--CCCCCeEEEEEECCC-----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 10 ISIVSGHDLALV--SKSMKTYSVAWVDPE-----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 10 VtVISAkdL~~~--~g~~DPYVvV~L~p~-----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
+-.++|++|+.. .+.+||||++++.+. ..++|+++++ +.||+|| +|.|.+....-.+....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 445799999743 578999999998643 2589999875 7999999 688876432100125789999999996
Q ss_pred C-CCceeEEEEEEcccccCC
Q 035970 83 L-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~~~ 101 (377)
. +|++||++.++|.+|...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 6 689999999999999854
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-12 Score=130.23 Aligned_cols=105 Identities=22% Similarity=0.353 Sum_probs=84.7
Q ss_pred CeEEEEEEEEeecCC-CC------CCCCCeEEEEEECC---C-CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceE
Q 035970 5 PRVLEISIVSGHDLA-LV------SKSMKTYSVAWVDP---E-RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAI 73 (377)
Q Consensus 5 ~g~LeVtVISAkdL~-~~------~g~~DPYVvV~L~p---~-~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L 73 (377)
..+|.|+|++|+++. +. ....||||+|.|.+ + .+.+|.| .+++.||+|||+|.|.|..+.| ..|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v-~nNg~nPvWne~F~F~i~~PEL----AlL 482 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTV-KNNEWKPTWGEEFTFPLTYPDL----ALI 482 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEe-CCCCcCceecceeEEEEEccCc----eEE
Confidence 367999999999874 21 23579999999963 1 3567765 4568999999999999988755 789
Q ss_pred EEEEEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc
Q 035970 74 MIEIYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP 124 (377)
Q Consensus 74 ~VeVyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~ 124 (377)
.|+|+|+|. ..|+|||++.+|+.+|.++.+ +++|++..|..
T Consensus 483 rf~V~D~D~~~~ddfiGQ~~LPv~~Lr~GyR----------~VpL~~~~g~~ 524 (537)
T PLN02223 483 SFEVYDYEVSTADAFCGQTCLPVSELIEGIR----------AVPLYDERGKA 524 (537)
T ss_pred EEEEEecCCCCCCcEEEEEecchHHhcCCce----------eEeccCCCcCC
Confidence 999999996 468999999999999998864 67888887754
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=129.82 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=92.3
Q ss_pred CeEEEEEEEEeecCCCCC--------CCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCce
Q 035970 5 PRVLEISIVSGHDLALVS--------KSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~--------g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~ 72 (377)
...|.|+|++|++|.... ...||||+|.+.+ ..+.+|+++.+ +.||+|||+|.|.+..+.| ..
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PEL----Al 543 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPEL----AL 543 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCCc----cE
Confidence 468999999999984221 2359999999964 25678998876 5999999999999887654 68
Q ss_pred EEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 73 IMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 73 L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
|.|+|||+|.. .|+|+|++.|||.+|..+. .+++|++..|...+.+.|-|+|
T Consensus 544 lrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy----------R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 544 LRIEVREYDMSEKDDFGGQTCLPVSELRPGI----------RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred EEEEEEecCCCCCCCeEEEEEcchhHhcCCc----------eeEeCcCCCCCCCCCEEEEEEE
Confidence 99999999854 6899999999999998875 3778998888776666665555
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=131.29 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=94.7
Q ss_pred eEEEEEEEEeecCCC-C-----CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 6 RVLEISIVSGHDLAL-V-----SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 6 g~LeVtVISAkdL~~-~-----~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
.+|.|.|++++++.. . +...||||.|.|.+- .+.+|+++++++-||.|+|+|+|+|..++| +.|.|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL----AliRF 691 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL----ALIRF 691 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce----eEEEE
Confidence 369999999997643 2 135799999999742 567899888889999999999999999876 78999
Q ss_pred EEEEcCcCC-CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCC--cceEEEEEEEEEe
Q 035970 76 EIYAAAWLK-DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR--PQGILNLGITLLD 136 (377)
Q Consensus 76 eVyD~d~~~-DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk--~~G~L~LsV~f~p 136 (377)
+|+|++... |+|+|+.++|+.+|..+++ .++|.+..|. ..-.|.+.|.+.+
T Consensus 692 ~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR----------hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 692 EVHDYDYIGKDDFIGQTTLPVSELRQGYR----------HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEEecCCCCcccccceeeccHHHhhCcee----------eeeecCCCCccccceeEEEEEEEec
Confidence 999999765 9999999999999998865 5677776664 4556777776653
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=130.03 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=103.7
Q ss_pred CeEEEEEEEEeecCCCC--------------------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccC
Q 035970 5 PRVLEISIVSGHDLALV--------------------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDR 64 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--------------------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~ 64 (377)
.+.|+|+|+.|++|++. .+.+||||.|.++..+..+|+|+.+...||.|||.|.+++.-
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah- 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH- 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-
Confidence 68999999999999741 146799999999988888999987645699999999999974
Q ss_pred CCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcc---eEEEEEEEEEecC
Q 035970 65 FLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQ---GILNLGITLLDNT 138 (377)
Q Consensus 65 ~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~---G~L~LsV~f~p~s 138 (377)
..+.|.|.|.|.+.++..+||.+.||+.+|..+.. ...||++...+|++. -.|+|++.|.+..
T Consensus 86 ----~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~-------i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 86 ----MASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE-------VDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ----CcceEEEEEecCCccCceEEEEEEEEHHHhcCCCc-------cccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 35899999999999999999999999999988643 246999999888653 3899999999865
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=91.25 Aligned_cols=91 Identities=30% Similarity=0.449 Sum_probs=75.8
Q ss_pred EEEEEEEEeecCCCCC--CCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 7 VLEISIVSGHDLALVS--KSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~--g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
.|.|.|+.|++|.... ...+|||++.+.+. ...+|++..+ +.||.|||+|.|.+.... ...|.|+||+...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~----~~~l~i~v~~~~~ 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPE----LAELEIEVYDKDR 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcc----cCEEEEEEEecCC
Confidence 3789999999997543 47899999999865 5788988765 569999999999998641 5789999999885
Q ss_pred C-CCceeEEEEEEcccccCCc
Q 035970 83 L-KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~~~~ 102 (377)
. .+.+||.+.+++.++..+.
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ccCCceeEEEEEEHHHcccCc
Confidence 5 5899999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-11 Score=125.92 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=90.0
Q ss_pred CeEEEEEEEEeecCC-CC-------CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCce
Q 035970 5 PRVLEISIVSGHDLA-LV-------SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 5 ~g~LeVtVISAkdL~-~~-------~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~ 72 (377)
..+|.|+|++++++. +. ....||||+|.|.+ ..+.+|+|.. ++.||+|||+|.|++.-+.| ..
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~-n~~nP~Wneef~F~l~vPEL----Al 542 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEY-DTWTPIWNKEFIFPLAVPEL----AL 542 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccC-CCCCCccCCeeEEEEEcCce----eE
Confidence 478999999999863 11 12479999999963 1456888765 47999999999999887755 78
Q ss_pred EEEEEEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEE
Q 035970 73 IMIEIYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITL 134 (377)
Q Consensus 73 L~VeVyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f 134 (377)
|.|+|+|++. .+|+|||++.||+.+|.++++ .++|++..|.. .-.|.+.+.|
T Consensus 543 lRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR----------~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 543 LRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH----------AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEEECCCCCCCCEEEEEEcchHHhhCccc----------eEeccCCCcCCCCCCeeEEEEEe
Confidence 9999999996 579999999999999998864 56788877743 3356555554
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=122.63 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=89.7
Q ss_pred CeEEEEEEEEeecCC----CC----CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCce
Q 035970 5 PRVLEISIVSGHDLA----LV----SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 5 ~g~LeVtVISAkdL~----~~----~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~ 72 (377)
...|.|+|++++++. .. ....||||+|.|.+ ..+.+|+++.+ +.||.|||+|.|.+..+.| ..
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeL----Al 525 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPEL----AL 525 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCce----eE
Confidence 467999999999852 11 13579999999963 25678998876 4799999999999887655 78
Q ss_pred EEEEEEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEE
Q 035970 73 IMIEIYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITL 134 (377)
Q Consensus 73 L~VeVyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f 134 (377)
|.|+|+|+|. .+|+|||++.||+..|..+++ .++|++..|.+ .-.|.+.+.|
T Consensus 526 lRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR----------~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 526 LRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR----------AFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEEECCCCCCCcEEEEEEcchhhhhCccc----------eEEccCCCcCCCCCeeEEEEEEe
Confidence 9999999985 469999999999999998864 56788877743 3356655554
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-10 Score=119.78 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCC----C----CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCee-eeEEEEEeccCCCCCCCce
Q 035970 6 RVLEISIVSGHDLAL----V----SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSW-NEKFVFRVDDRFLTDETSA 72 (377)
Q Consensus 6 g~LeVtVISAkdL~~----~----~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~W-NEtF~F~V~~~~L~~~~s~ 72 (377)
..|.|+|++|++|.- . ....||||+|.+.+. .+.+|++..+ +.||.| ||+|.|.+..+.| ..
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pEL----A~ 505 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPEL----AL 505 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCce----eE
Confidence 479999999998731 1 124799999998631 4678998765 589999 9999999887655 78
Q ss_pred EEEEEEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEEEec
Q 035970 73 IMIEIYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITLLDN 137 (377)
Q Consensus 73 L~VeVyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f~p~ 137 (377)
|.|.|+|++. ..|+|||++.|||..|..+++ .++|++..|.. ..+|.+.|.+.+.
T Consensus 506 lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR----------~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 506 LWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR----------AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEEEeCCCCCCCCEEEEEEcchhHhhCCee----------EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 9999999984 579999999999999988764 56888887753 5578888888765
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=126.37 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=119.3
Q ss_pred CCeEEEEEEEEeecCCCC----CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV----SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~----~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
+.|+|+|+|.+|++|+.. .+..|||+++........+|+|.++ +.||+|||+|.+.+.. -++.|.++|||
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns-----~~d~L~LslyD 507 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNS-----FTDPLNLSLYD 507 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEecc-----cCCceeEEEEe
Confidence 578999999999999742 5899999999987555668999875 8999999999999985 26899999999
Q ss_pred cC-cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecCCCCCCcchhhcCCCCccccc
Q 035970 80 AA-WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNTMRSMPLFAELCGAGANFSEV 158 (377)
Q Consensus 80 ~d-~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s~~s~P~~~~~~~~~~~~~~~ 158 (377)
.+ ...|+.+|++.++|..|.....+. ..-|+++ .+.+..|.|++.++|.|..- .-.++....|..+..
T Consensus 508 ~n~~~sd~vvG~~~l~L~~L~~~~~~~------ne~~e~~-~~~k~vGrL~yDl~ffp~~e----~k~~~~~s~e~~ed~ 576 (1227)
T COG5038 508 FNSFKSDKVVGSTQLDLALLHQNPVKK------NELYEFL-RNTKNVGRLTYDLRFFPVIE----DKKELKGSVEPLEDS 576 (1227)
T ss_pred ccccCCcceeeeEEechHHhhhccccc------cceeeee-ccCccceEEEEeeeeecccC----CccccccccCCcccC
Confidence 66 567999999999999987765421 2244444 35688999999999998752 111222233333444
Q ss_pred ccccccccCCCccccccccCCcchh
Q 035970 159 SSGANDVMKPETTTAQNSKQSKDDQ 183 (377)
Q Consensus 159 ~vg~r~l~g~~~k~~~~~~s~~~~~ 183 (377)
.+|+....-.+-|.++..++++...
T Consensus 577 n~GI~k~tl~~~~~l~~~~~~~~~~ 601 (1227)
T COG5038 577 NTGILKVTLREVKALDELSSKKDNK 601 (1227)
T ss_pred CcceeEEEeeccccccCccccccce
Confidence 5677666666666666655544333
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-11 Score=124.30 Aligned_cols=114 Identities=22% Similarity=0.363 Sum_probs=90.7
Q ss_pred eEEEEEEEEeecCC--CCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc-
Q 035970 6 RVLEISIVSGHDLA--LVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW- 82 (377)
Q Consensus 6 g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~- 82 (377)
..+.++|+.|++|. +..|++||||.+.++ ..+.+|+++.. .+||+|||+|.|.+++. ...|.|.|||++.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~-ktkrrtrti~~-~lnpvw~ekfhfechns-----tdrikvrvwded~d 367 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-KTKRRTRTIHQ-ELNPVWNEKFHFECHNS-----TDRIKVRVWDEDND 367 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeec-ccchhhHhhhh-ccchhhhhheeeeecCC-----CceeEEEEecCccc
Confidence 35789999999994 567999999999998 46888998875 79999999999999974 5899999999872
Q ss_pred -----------CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEE
Q 035970 83 -----------LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLL 135 (377)
Q Consensus 83 -----------~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~ 135 (377)
-.|+|+|+..|.+..|...- .+||.|.... ....|-|+|.|.+.
T Consensus 368 lksklrqkl~resddflgqtvievrtlsgem---------dvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEM---------DVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccch---------hhhcchhhccchhhccceEEEEEEEE
Confidence 15999999999888775432 3799887532 34677776666653
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-10 Score=86.70 Aligned_cols=87 Identities=28% Similarity=0.535 Sum_probs=73.4
Q ss_pred EEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-C
Q 035970 8 LEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-K 84 (377)
Q Consensus 8 LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~ 84 (377)
|.|.|++|++|... ....+|||.+.+......+|++... +.||.|||.|.|.+... ....|.|+||+.+.. .
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDP----ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCC----CCCEEEEEEEecCCCCC
Confidence 57999999999653 3578999999998646788988765 68999999999999862 247899999999865 4
Q ss_pred CceeEEEEEEccccc
Q 035970 85 DALIGSVRVLISHLF 99 (377)
Q Consensus 85 DdlIG~a~IpLs~L~ 99 (377)
+.+||.+.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 899999999999987
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.7e-10 Score=97.70 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=75.1
Q ss_pred EEEEEEEeecCCC----CCC--CCCeEEEEEECC--CCeEEeEeeCCCCCC--CeeeeEEEEEeccCCCC----------
Q 035970 8 LEISIVSGHDLAL----VSK--SMKTYSVAWVDP--ERKLTTRVDQNGLNN--PSWNEKFVFRVDDRFLT---------- 67 (377)
Q Consensus 8 LeVtVISAkdL~~----~~g--~~DPYVvV~L~p--~~k~rTrV~k~gg~N--P~WNEtF~F~V~~~~L~---------- 67 (377)
|+|.|..|+++.. ..| .+||||++|+.+ ..+++|.|+.. +.| |.||+.|.|++......
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 8999999999642 234 589999999987 36789999875 677 99999999998762210
Q ss_pred ---------CCCceEEEEEEEcCcC-CCceeEEEEEEcccccCCc
Q 035970 68 ---------DETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 68 ---------~~~s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~ 102 (377)
.....|.|+|||.|.+ .|++||++.++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1356899999999965 6999999999999886653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.2e-10 Score=121.99 Aligned_cols=125 Identities=22% Similarity=0.288 Sum_probs=96.7
Q ss_pred CCCCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 1 MVPPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
|....+.|+|.+++|+||+. .++.+||||++.+.....++|+++++ ++||+|||.|.++|... ..+.|.|.|+
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r----~~D~~~i~v~ 1109 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNR----VKDVLTINVN 1109 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeecc----ccceEEEEEe
Confidence 55678999999999999975 46789999999998766789999887 79999999999999864 3589999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC-CCcceEEEEEEEEEec
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS-GRPQGILNLGITLLDN 137 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s-Gk~~G~L~LsV~f~p~ 137 (377)
|++.. ++++||++.|+|..|..+... ....+|-.+. +...|.++....|.+.
T Consensus 1110 Dwd~~~knd~lg~~~idL~~l~~~~~~-------n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1110 DWDSGEKNDLLGTAEIDLSKLEPGGTT-------NSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred ecccCCCccccccccccHhhcCcCCcc-------ceeeeccCcceEecccEeecceecchh
Confidence 99964 799999999999999887541 1222322221 2456666666655543
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=92.27 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=71.5
Q ss_pred EEEEEEEeecCCCC-----CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 8 LEISIVSGHDLALV-----SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 8 LeVtVISAkdL~~~-----~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
|.|+|.+|+||... ++.+||||++.++...+.+|++ +.||.|||+|.|.|+. ...+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk------~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK------NNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC------CcEEEEEEEeCCC
Confidence 68999999999642 4688999999999766888876 4799999999999964 4789999999875
Q ss_pred CCCceeEEEEEEcccccCCc
Q 035970 83 LKDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L~~~~ 102 (377)
-..-.||...|.|++|...-
T Consensus 71 ~~~~Pi~llW~~~sdi~Ee~ 90 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAEEI 90 (109)
T ss_pred CeecceeeehhhHHHHHHHH
Confidence 55679999999999987653
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=114.51 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=103.0
Q ss_pred CCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 4 PPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
-.+.|.|.|..|++|+. +.|..||||.|.++.....||.++.+ ++.|.|.|.|.|.++..| ..|.|=|||+|
T Consensus 3 ~~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-----~~l~fYv~D~d 76 (800)
T KOG2059|consen 3 VEQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-----RYLSFYVWDRD 76 (800)
T ss_pred cccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-----eeEEEEEeccc
Confidence 45789999999999964 56899999999999777889998876 799999999999999864 78999999999
Q ss_pred cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEee--CCCCCcceEEEEEEEEEecC
Q 035970 82 WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR--RPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 82 ~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr--r~sGk~~G~L~LsV~f~p~s 138 (377)
..+|+.||.+.|.=.+|..-+. ...|++|. +++...+|+|+|.+.+.+..
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~-------~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPG-------KDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred cccccccceeeeeHHHHhhCCC-------CccceeccccCCChhhceeEEEEEEecccc
Confidence 6689999999988777654321 23577777 57888999999999998865
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=112.85 Aligned_cols=118 Identities=15% Similarity=0.234 Sum_probs=87.4
Q ss_pred eEEEEEEEEeecCCCCC-CCCCeEEEEEECCC----CeEEeEeeCCCCCCCeee-eEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLALVS-KSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWN-EKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~-g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WN-EtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
-.|.|.||.|+.|...+ +-..|||.|.|-+. .+++|.++.++|.||+|| |+|+|.|.++.+ ..|.|.||+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~----A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF----AFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce----EEEEEEEec
Confidence 46889999999998665 34569999998542 455666556678999999 999999998754 889999999
Q ss_pred cCcCCC-ceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC-C-CCcceEEEEEEEEEec
Q 035970 80 AAWLKD-ALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP-S-GRPQGILNLGITLLDN 137 (377)
Q Consensus 80 ~d~~~D-dlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~-s-Gk~~G~L~LsV~f~p~ 137 (377)
.|.++| .|||++++|+..+..+.+ +.+|++. + .-.-..|.+.+...+.
T Consensus 1141 eDmfs~~~FiaqA~yPv~~ik~GfR----------sVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKSGFR----------SVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred ccccCCcceeeeeecchhhhhccce----------eeecccCchhhhhhhhheeeeEeccc
Confidence 998865 599999999999987753 5666643 1 1223344555544443
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-09 Score=107.21 Aligned_cols=92 Identities=23% Similarity=0.311 Sum_probs=74.5
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|.|+.|++|+. ..+..||||++++-.. .+.+|.+.+ .+.||+|||+|.|.|+...| ....|.|+
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l--~~~~l~l~ 371 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPEQL--AEVSLELT 371 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccccEEEeCCHHHh--heeEEEEE
Confidence 557899999999999974 4678899999998532 456777765 48999999999999987655 45789999
Q ss_pred EEEcCcC-CCceeEEEEEEccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISH 97 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~ 97 (377)
|||++.+ .+++||.+.+....
T Consensus 372 V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEcccccccceeeEEEecCCC
Confidence 9999976 57799988776554
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-09 Score=112.04 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=82.0
Q ss_pred CCeEEEEEEEEeecCC--CCCCCCCeEEEEEECCC------CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 4 PPRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPE------RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 4 p~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~------~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
..+.|.|.|+.|+++. +.+|-+||||+|.+.|. ..++|+|++. +.||+|+|+|.|.|+...+..+...|.|
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEE
Confidence 3577889999999985 45799999999999875 3568998875 8999999999999998776556789999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccC
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFG 100 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~ 100 (377)
+|+|+|++ .++|-|++.+.|.++..
T Consensus 1024 TVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EeeccceecccccchHHHHhhCCCCC
Confidence 99999987 59999999999988743
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=102.06 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=90.7
Q ss_pred CeEEEEEEEEeecCCCC-------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCC-ceEEEE
Q 035970 5 PRVLEISIVSGHDLALV-------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDET-SAIMIE 76 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~-------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~-s~L~Ve 76 (377)
.++|+++|..|+-+... ....||||.|.++..+..+| . +..||.|||.|.+++.-. . ..|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~-~~~~p~w~e~f~i~~ah~-----~~~~~~f~ 79 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---S-HEYDRVWNQTFQILCAHP-----LDSTITIT 79 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---C-CCCCCccccceeEEeeee-----cCCcEEEE
Confidence 57899999999855321 11239999999997777777 3 356999999999999742 3 579999
Q ss_pred EEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc-c-eEEEEEEEEEecCC
Q 035970 77 IYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP-Q-GILNLGITLLDNTM 139 (377)
Q Consensus 77 VyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~-~-G~L~LsV~f~p~s~ 139 (377)
|.| +..+||.+.||+.+|..+.. ....|+++...+|++ . ..|+|++.|.+...
T Consensus 80 vk~----~~~~ig~~~~p~~~~~~g~~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 80 LKT----KCSILGRFHIQAHQIVTEAS------FINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred Eec----CCeEEEEEEEEHHHhhCCCc------ccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 988 57899999999999987632 124799999988764 3 48999999999763
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-08 Score=105.98 Aligned_cols=121 Identities=23% Similarity=0.376 Sum_probs=91.7
Q ss_pred CCeEEEEEEEEeecCC--CCCCCCCeEEEEEECCCCe------------------------------EEeEeeCCCCCCC
Q 035970 4 PPRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPERK------------------------------LTTRVDQNGLNNP 51 (377)
Q Consensus 4 p~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~~k------------------------------~rTrV~k~gg~NP 51 (377)
|...|.|.+..|+||. +++|-+|||+...+-|..+ +-|.|.+ .+.||
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnP 190 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNP 190 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCc
Confidence 4445667788899984 5678899999987743210 1244444 48999
Q ss_pred eeeeEEEEEeccCCCCCCCceEEEEEEEcCc----------------------------------C---CCceeEEEEEE
Q 035970 52 SWNEKFVFRVDDRFLTDETSAIMIEIYAAAW----------------------------------L---KDALIGSVRVL 94 (377)
Q Consensus 52 ~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~----------------------------------~---~DdlIG~a~Ip 94 (377)
.|+|+|.|.|.+. .+..+++.|||+|. . .|+|+|.+.||
T Consensus 191 kW~EkF~F~IeDv----~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNip 266 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDV----QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIP 266 (1103)
T ss_pred chhhheeeehhcc----ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 9999999999985 57899999999861 0 18999999999
Q ss_pred cccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEEec
Q 035970 95 ISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLLDN 137 (377)
Q Consensus 95 Ls~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~p~ 137 (377)
|.++.+.+- ..|+.|...+ .+.+|.++|.+++...
T Consensus 267 l~EiP~~Gl--------d~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 267 LAEIPPDGL--------DQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred hhcCCcchH--------HHHhccCcccccccccceEEEEEEEeee
Confidence 999977543 3588877543 4799999999999754
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=93.90 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=99.6
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeee-EEEEEeccCCCCCCCceEEEEEEEc
Q 035970 5 PRVLEISIVSGHDLALV---SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNE-KFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNE-tF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
.+.|-|.|..|++|+-. +...|.||.+.+. +..++|.|..+ .+||.||- =|.|.|++..| ....|.|.++|+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~-n~t~ktdvf~k-slnp~wnsdwfkfevddadl--qdeplqi~lld~ 77 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-NTTFKTDVFLK-SLNPQWNSDWFKFEVDDADL--QDEPLQIRLLDH 77 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEec-ccceehhhhhh-hcCCcccccceEEecChhhh--ccCCeeEEEecc
Confidence 37899999999999743 3467999999997 56788998876 79999995 59999999888 456889999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcc-c--CCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLT-H--NSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~-~--~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
+.. -++-||.+.|.+..|.-... + .+....-..|+++.+.=.-.+|+|++-|.+.
T Consensus 78 dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 78 DTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred cccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 964 58999999999987653321 0 1223445679999887666899999987764
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=85.28 Aligned_cols=119 Identities=18% Similarity=0.312 Sum_probs=81.9
Q ss_pred EEEeecCCCC-CCCCCeEEEEEECCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCC----------CCC-CCceEEEE
Q 035970 12 IVSGHDLALV-SKSMKTYSVAWVDPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRF----------LTD-ETSAIMIE 76 (377)
Q Consensus 12 VISAkdL~~~-~g~~DPYVvV~L~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~----------L~~-~~s~L~Ve 76 (377)
+++++++.+. ++.+||||++...+. ...+|++.++ +.||.|||.|.|.+.... ..+ .-..|.++
T Consensus 137 ~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 137 VLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhhcccCceeCCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 3444444332 567999999987542 2357888776 789999999999988651 000 12568899
Q ss_pred EEEcC--cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC-C------CCCcceEEEEEEEEEecC
Q 035970 77 IYAAA--WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR-P------SGRPQGILNLGITLLDNT 138 (377)
Q Consensus 77 VyD~d--~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr-~------sGk~~G~L~LsV~f~p~s 138 (377)
+|+.. ...++|+|++.+|+..+..... ...||-|+. + ++...|.+++.+++....
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~s~-------p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQKSS-------PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhccC-------ccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence 99854 3469999999999998763322 135887773 2 234678999999987654
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.5e-05 Score=87.60 Aligned_cols=104 Identities=18% Similarity=0.327 Sum_probs=80.2
Q ss_pred CeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~VeV 77 (377)
.++|.|-|..|++|.-. +..+||||+.++.|+ .+++|+|+++ +.||+|||.+.+. .+...+ .+..|.+.|
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l--~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEIL--QQRELQVSV 1599 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhh--hhheeeeee
Confidence 46788999999999533 457899999999875 5788999986 8999999998876 333223 357899999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
|..+.+ .+.|+|.+.|+|.++..... ...||+|-
T Consensus 1600 ls~~~~~en~~lg~v~i~L~~~~l~kE-------~~~Wy~lg 1634 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKVDLLKE-------SVGWYNLG 1634 (1639)
T ss_pred ecccceeeeeeeeeeecchhhcchhhh-------hcceeecc
Confidence 998854 68999999999998754322 12588764
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=79.14 Aligned_cols=102 Identities=26% Similarity=0.371 Sum_probs=78.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEEC--CC----CeEEeEeeCCCCCCCeeeeE-EEEE-eccCCCCCCCceEEEEE
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWVD--PE----RKLTTRVDQNGLNNPSWNEK-FVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L~--p~----~k~rTrV~k~gg~NP~WNEt-F~F~-V~~~~L~~~~s~L~VeV 77 (377)
.+|.|+||+++=|.+. +...||.|.+- |. ..++|++...++.||+|||. |.|. |--+.| ..|.|.|
T Consensus 703 ~t~sV~VISgqFLSdr--kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL----A~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDR--KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL----ASLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeecccc--ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch----hheeeee
Confidence 5789999999988653 45699999874 32 45789988888999999965 8886 443333 7899999
Q ss_pred EEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcce
Q 035970 78 YAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQG 126 (377)
Q Consensus 78 yD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G 126 (377)
|++ +.+|||+-.+|+..|.++++ .+.||...+.+.+
T Consensus 777 yeE---ggK~ig~RIlpvd~l~~GYr----------hv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 777 YEE---GGKFIGQRILPVDGLNAGYR----------HVCLRSESNQPLT 812 (1189)
T ss_pred ecc---CCceeeeeccchhcccCcce----------eEEecCCCCCccc
Confidence 997 47899999999999988865 3456666665544
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00093 Score=71.73 Aligned_cols=106 Identities=16% Similarity=0.271 Sum_probs=80.1
Q ss_pred eEEEEEEEEeecCC-CCCCCCCeEEEEEE-CC-----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 6 RVLEISIVSGHDLA-LVSKSMKTYSVAWV-DP-----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 6 g~LeVtVISAkdL~-~~~g~~DPYVvV~L-~p-----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
+.+.|.|+.|.||+ ..+|...|||.|.+ +| .+++.|+.. .++-.|.+||+|.|-+....- -+...|.|.|.
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtK-snnWaPKyNEtF~f~Lg~e~~-Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTK-SNNWAPKYNETFHFFLGNEGG-PEHYELQFCVK 1202 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhcccccc-CCCcCcccCceeEEEeccCCC-CceEEEEEeeh
Confidence 56789999999997 44678899999987 33 256677764 456789999999999875421 13467888888
Q ss_pred EcCcCC-CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 79 AAAWLK-DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 79 D~d~~~-DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|+=+.+ |..+|.+.++|.++...+. .-.|++|-+.
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS-------~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGS-------CACWVPLGRR 1238 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCc-------eeEeeecccc
Confidence 887765 7899999999999987654 2368888643
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00034 Score=69.95 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=69.6
Q ss_pred CeEEEEEEEEeecCC--CCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLA--LVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
..-|.|+++.+..|. +.++-+||||..++.++ .+++|++.++ +.||.||+.|.|.+.+..| ....+.|.||
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL--a~~kv~lsvg 308 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL--AYKKVALSVG 308 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccch--hcceEEEeec
Confidence 346889999988885 44688999999999764 4577887665 8999999999999998877 4678999999
Q ss_pred EcCcC-CCceeEEEEE
Q 035970 79 AAAWL-KDALIGSVRV 93 (377)
Q Consensus 79 D~d~~-~DdlIG~a~I 93 (377)
|++.- ..+++|-...
T Consensus 309 d~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSML 324 (362)
T ss_pred ccCCCcCccCCCcccc
Confidence 99865 6788886543
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00017 Score=73.86 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=92.5
Q ss_pred eEEEEEEEEeecCCCCCC--CCCeEEEEEEC----CCCeEEeEeeCCCCCCCeeeeEEEEEeccCC-CCC------CCce
Q 035970 6 RVLEISIVSGHDLALVSK--SMKTYSVAWVD----PERKLTTRVDQNGLNNPSWNEKFVFRVDDRF-LTD------ETSA 72 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g--~~DPYVvV~L~----p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~-L~~------~~s~ 72 (377)
..|++.|++++++.-.+| ..|.|+.+.+. ..++.+|.|+++ +..|.|+|.|.+.+.... ++. ....
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 467888899988875555 35789988763 235778888875 789999999999987621 110 1346
Q ss_pred EEEEEEEcCc-C-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 73 IMIEIYAAAW-L-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 73 L~VeVyD~d~-~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
+.|+||++.- + +|.|+|++.|-|.-|...-. + .-.|+|.+...-..|.|.+.|++....
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~ce------i-~e~~~l~DGRK~vGGkLevKvRiR~Pi 506 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCE------I-CEYLPLKDGRKAVGGKLEVKVRIRQPI 506 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccc------h-hhceeccccccccCCeeEEEEEEeccc
Confidence 8999999984 3 69999999999988765421 1 246777766556889999999998764
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00043 Score=61.25 Aligned_cols=94 Identities=20% Similarity=0.340 Sum_probs=69.1
Q ss_pred EEEEEEEeecCCCC-------C--------CCCCeEEEEEEC--C-CCeEEeEeeCCCCCCCeeeeEEEEEec-------
Q 035970 8 LEISIVSGHDLALV-------S--------KSMKTYSVAWVD--P-ERKLTTRVDQNGLNNPSWNEKFVFRVD------- 62 (377)
Q Consensus 8 LeVtVISAkdL~~~-------~--------g~~DPYVvV~L~--p-~~k~rTrV~k~gg~NP~WNEtF~F~V~------- 62 (377)
|.|.|+.|-+|+.. . =-.++||.+.+. + ....+|+++.. +-.|.||..|.|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 56889999999521 0 135899999853 3 35678887765 789999999999987
Q ss_pred -cC-CCC--CCCceEEEEEEEcCc-----------CCCceeEEEEEEcccccCCc
Q 035970 63 -DR-FLT--DETSAIMIEIYAAAW-----------LKDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 63 -~~-~L~--~~~s~L~VeVyD~d~-----------~~DdlIG~a~IpLs~L~~~~ 102 (377)
+. .|+ .+...|.|+||+... .+|-+||.+.||+.+|+...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 20 111 145789999999752 25789999999999998753
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00022 Score=79.09 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=68.8
Q ss_pred EEEEEEEEeecCC--CCCCCCCeEEEEEECCCC-eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 7 VLEISIVSGHDLA--LVSKSMKTYSVAWVDPER-KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 7 ~LeVtVISAkdL~--~~~g~~DPYVvV~L~p~~-k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
.++|.|+.|.+|. +.+|..|||+.+.++... .-++..+. ++.||++++-|.+...-+. ...|.++|||+|.+
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp~----ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLPF----EKDLIVEVYDHDLE 688 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccch----hhcceeEEEEeecc
Confidence 5679999999996 457899999999998532 12333344 5899999999998877653 47899999999965
Q ss_pred -CCceeEEEEEEccc
Q 035970 84 -KDALIGSVRVLISH 97 (377)
Q Consensus 84 -~DdlIG~a~IpLs~ 97 (377)
+|+.||+.+|.|.+
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 59999999999886
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00012 Score=73.07 Aligned_cols=129 Identities=18% Similarity=0.247 Sum_probs=87.0
Q ss_pred CeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEE--EeccCCCCCCCceEEEE
Q 035970 5 PRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVF--RVDDRFLTDETSAIMIE 76 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F--~V~~~~L~~~~s~L~Ve 76 (377)
.+.|+.+|..|++|+.. .+..|||+.+.+.|. .+.+|++.. ++.||.|||+... ...+.. ....+.+.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~---~~K~~Rk~ 167 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDT---HLKVLRKV 167 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchh---hhhhhhee
Confidence 46788999999999754 688999999999864 346666654 5899999987554 344331 24567788
Q ss_pred EEEcCc-CCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC---CCCCcceEEEEEEEEEecC
Q 035970 77 IYAAAW-LKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR---PSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 77 VyD~d~-~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr---~sGk~~G~L~LsV~f~p~s 138 (377)
|.|.+. ..++++|+.++++..|.+.........+. ..++..+ ..-..+|.|.+++.|....
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~-~~lp~~rad~~~~E~rg~i~isl~~~s~~ 232 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLE-KSLPSERADRDEDEERGAILISLAYSSTT 232 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhh-ccCCcccccccchhhccceeeeeccCcCC
Confidence 888774 46899999999999887764421111110 1111111 1225788899888876654
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00094 Score=55.72 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=65.4
Q ss_pred EEEEEEeecCCCCC---CCCCeEEEE--EECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 9 EISIVSGHDLALVS---KSMKTYSVA--WVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 9 eVtVISAkdL~~~~---g~~DPYVvV--~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
-|+|+.++||.-++ ..+..|++- .+......+|.+ +.|..||+++|+|.|.+..-.| ..-.|.|.||. ..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~-rrgs~d~~f~ETFVFqi~l~qL--~~V~L~fsv~~-~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSA-KEGSNDIEFMETFVFAIKLQNL--QTVRLVFKIQT-QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchh-hcCCCChhHHHHHHHHHHHhhc--cceEEEEEeec-cCC
Confidence 37899999995332 345667764 444445566765 4568999999999999886544 55778999998 445
Q ss_pred CCceeEEEEEEcccccCC
Q 035970 84 KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~ 101 (377)
+.+.||.+.+.|.++-..
T Consensus 78 RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred ccceeeEEEeecccCCHH
Confidence 789999999999887543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0014 Score=71.22 Aligned_cols=86 Identities=14% Similarity=0.269 Sum_probs=65.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEE-EECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVA-WVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV-~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
.+.+.|+|++|+ ....|+|.++ +++ .+.++|.+.++ +.||+||+...|.|.+... ....|.|||.+.+
T Consensus 53 ~~~~~~~~~~~~-----~~~~~~~~~~~~~g-~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 121 (644)
T PLN02964 53 SGIALLTLVGAE-----MKFKDKWLACVSFG-EQTFRTETSDS-TDKPVWNSEKKLLLEKNGP----HLARISVFETNRL 121 (644)
T ss_pred cCeEEEEeehhh-----hccCCcEEEEEEec-ceeeeeccccc-cCCcccchhhceEeccCCc----ceEEEEEEecCCC
Confidence 356778888886 1223776655 555 68899998765 8999999999999987532 4469999999865
Q ss_pred -CCceeEEEEEEcccccCC
Q 035970 84 -KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~ 101 (377)
.+++++.+.++|.++...
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 699999999988877654
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0014 Score=66.53 Aligned_cols=109 Identities=13% Similarity=0.216 Sum_probs=80.5
Q ss_pred CCCCCeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceE
Q 035970 1 MVPPPRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAI 73 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L 73 (377)
+|...+.|+|.||.|++|-.. .-.++|||.|++.+. .+.+|+...+ +.+|.+.+...|.-.++ ...|
T Consensus 264 ~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~-----~k~L 337 (405)
T KOG2060|consen 264 LMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPP-----GKYL 337 (405)
T ss_pred hhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCC-----ccEE
Confidence 355678999999999999432 236799999998643 4567887765 67777777788877663 6899
Q ss_pred EEEEEEc-CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 74 MIEIYAA-AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 74 ~VeVyD~-d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
.+.||.. ... .+.|+|.+.|-+.+|... ..+...||.|...+
T Consensus 338 q~tv~gdygRmd~k~fmg~aqi~l~eL~ls------~~~~igwyKlfgss 381 (405)
T KOG2060|consen 338 QGTVWGDYGRMDHKSFMGVAQIMLDELNLS------SSPVIGWYKLFGSS 381 (405)
T ss_pred EEEEeccccccchHHHhhHHHHHhhhhccc------cccceeeeeccCCc
Confidence 9999963 333 478999999999988554 23456899888543
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.16 Score=43.81 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=77.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEECCCC--eEEeEeeCCCCCCCeeeeEEEEEecc----CCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWVDPER--KLTTRVDQNGLNNPSWNEKFVFRVDD----RFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~--k~rTrV~k~gg~NP~WNEtF~F~V~~----~~L~~~~s~L~VeVyD 79 (377)
-.+.|+|+...+++.. ....||....+... ..+|......+..-.|||.|.|.+.- ..-.-+...+.|.|+.
T Consensus 7 f~~~l~i~~l~~~p~~--~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~ 84 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS--NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFE 84 (143)
T ss_pred EEEEEEEEEeECcCCC--CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEE
Confidence 4578899999988762 22333333333222 34554443335678899999987542 1000134568888888
Q ss_pred cCcCCC-ceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 80 AAWLKD-ALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 80 ~d~~~D-dlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
....+. ..+|.+.|.|.++..... ......++|... .+....|+|+|.+....
T Consensus 85 ~~~~~~k~~lG~~~inLaey~~~~~-----~~~~~~~~l~~~-~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 85 VDGSGKKKVLGKVSINLAEYANEDE-----EPITVRLLLKKC-KKSNATLSISISLSELR 138 (143)
T ss_pred ecCCCccceEEEEEEEHHHhhCcCC-----CcEEEEEeCccC-CCCCcEEEEEEEEEECc
Confidence 753333 599999999999987531 123456666543 35677888888887653
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.065 Score=49.10 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=50.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEE-CCCC----eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWV-DPER----KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L-~p~~----k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..+.|+|+++.+|.-.....+.||.+.| ++.. ...|+... ...++.|||.+.|++.-..|- -.+.|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLP-r~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLP-RMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCC-hhHeEEEEEEEe
Confidence 4689999999999642345678888765 2222 23454333 246799999999986654431 257899999986
Q ss_pred C
Q 035970 81 A 81 (377)
Q Consensus 81 d 81 (377)
.
T Consensus 86 ~ 86 (173)
T cd08693 86 S 86 (173)
T ss_pred c
Confidence 4
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.089 Score=47.73 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=57.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEE-CCCCe----EEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWV-DPERK----LTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L-~p~~k----~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..++|+|+.|.++.-. ...|-||.+.+ ++... ..|+-.. ..++.|||-+.|++.-..|- -.+.|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~-~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP-r~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN-DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP-RSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC-CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCC-hhheEEEEEEEE
Confidence 4688999999988532 34688988865 22221 2333222 36899999999987654441 257899999996
Q ss_pred CcC-----CCceeEEEEEEccc
Q 035970 81 AWL-----KDALIGSVRVLISH 97 (377)
Q Consensus 81 d~~-----~DdlIG~a~IpLs~ 97 (377)
... ....||.+.++|=+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 531 12468888776654
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0023 Score=64.78 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCCccccccccCCcchhhhhhhccccCCcchhhhhhccccccccccccc--------cccCCCcccccccCCcc
Q 035970 167 KPETTTAQNSKQSKDDQELERVLKPKDNSLSKAKLRRSQSDKTDLTSED--------YSKNSSHQAQQPTGTGS 232 (377)
Q Consensus 167 g~~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 232 (377)
|...|+.|++|.++...|+|++++ |..-+.+-++++|..|++.|..=+ |+||++++.|+|++|.+
T Consensus 36 G~fGkV~~Vrk~dt~kiYAmKvl~-K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~ 108 (357)
T KOG0598|consen 36 GSFGKVFQVRKKDTGKIYAMKVLK-KKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLN 108 (357)
T ss_pred cCCceEEEEEEcccCceeehhhhh-hhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccC
Confidence 778999999999999999999999 677888889999999999998844 89999999999999974
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.45 Score=43.34 Aligned_cols=130 Identities=17% Similarity=0.243 Sum_probs=86.5
Q ss_pred CCCeEEEEEEEEeecCCCC-C---CCCCeEEEEEEC-CCCeEEeEeeCCCCCCCeeeeEEEEEeccCCC---------CC
Q 035970 3 PPPRVLEISIVSGHDLALV-S---KSMKTYSVAWVD-PERKLTTRVDQNGLNNPSWNEKFVFRVDDRFL---------TD 68 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~-~---g~~DPYVvV~L~-p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L---------~~ 68 (377)
+....|+|.|+.++-.-+. . +..+.-.++.++ ..++++|+.+.- .-+|.++|.|.|+++.... -.
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 3467899999998765321 1 455566666654 458899987654 7899999999999986531 11
Q ss_pred CCceEEEEEEEcCcCC-CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC---CcceEEEEEEEEEecC
Q 035970 69 ETSAIMIEIYAAAWLK-DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG---RPQGILNLGITLLDNT 138 (377)
Q Consensus 69 ~~s~L~VeVyD~d~~~-DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG---k~~G~L~LsV~f~p~s 138 (377)
....|++.|...+..+ ..++|+..+.=..++..+. . .......|..... -+.|.|++.+.+.|..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~----~-~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN----G-STSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCC----C-ccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 2345777777766543 4788887776666554432 1 1134556664433 4899999999998874
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.17 Score=44.91 Aligned_cols=90 Identities=23% Similarity=0.249 Sum_probs=60.0
Q ss_pred eEEEEEEEEeecCCC-CCCCCCeEEEEEE--CCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLAL-VSKSMKTYSVAWV--DPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~-~~g~~DPYVvV~L--~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..++|+|....++.. .....+-||.+.+ +.. ....|..... ..++.|||.+.|++.-..|- -.+.|.|.||+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP-~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLP-REARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCC-hhheEEEEEEE
Confidence 357888888888754 2345678888765 321 1234443321 36899999999986544331 25789999999
Q ss_pred cCcC---CCceeEEEEEEccc
Q 035970 80 AAWL---KDALIGSVRVLISH 97 (377)
Q Consensus 80 ~d~~---~DdlIG~a~IpLs~ 97 (377)
.... .+..||.+.++|=+
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EecCCCCcceEEEEEeEEeEc
Confidence 7643 35799999988765
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.23 Score=41.75 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=58.8
Q ss_pred CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCCc
Q 035970 23 KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTL 102 (377)
Q Consensus 23 g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~ 102 (377)
|..+..|++.++......|.-.. -.+..||++|.|.++. ...|.|.||=.|+ ..+-|-..+-|.+....
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~LdR------sRELEI~VywrD~--RslCav~~lrLEd~~~~- 75 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELER------SRELEIAVYWRDW--RSLCAVKFLKLEDERHE- 75 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc--cccccccceeEEEeec------ccEEEEEEEEecc--hhhhhheeeEhhhhccc-
Confidence 34689999999865566675543 3578999999999986 4789999997764 34555556666663211
Q ss_pred ccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 103 THNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 103 ~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
..++ -.|+|.|...|+|
T Consensus 76 ----------~~~~-----lepqg~l~~ev~f 92 (98)
T cd08687 76 ----------VQLD-----MEPQLCLVAELTF 92 (98)
T ss_pred ----------ceec-----cccccEEEEEEEe
Confidence 1222 2467888777777
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.011 Score=66.22 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=73.8
Q ss_pred EEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEec---cC-C-CCCCCceEEEEEEEc
Q 035970 8 LEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVD---DR-F-LTDETSAIMIEIYAA 80 (377)
Q Consensus 8 LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~---~~-~-L~~~~s~L~VeVyD~ 80 (377)
|++.|.+|+.|.. ..+-+|||+.+..-. +.+.|-|+. +++||+||++..|.-- .. . +...--.+.|+|||.
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCG-QSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhccc-ccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 4455667777743 346789999998763 566788776 5899999999998521 11 1 111224678999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEE
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGI 132 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV 132 (377)
+.. .++|+|.......-....+ ...|+++.+. +...|.++++.
T Consensus 286 dr~g~~ef~gr~~~~p~V~~~~p--------~lkw~p~~rg-~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 286 DRSGINEFKGRKKQRPYVMVQCP--------ALKWVPTMRG-AFLDGDVLIAA 329 (1105)
T ss_pred hhhchHHhhcccccceEEEecCC--------ccceEEeecc-cccccchhHHH
Confidence 864 5899998765444332222 2468877753 45566655554
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.49 Score=48.05 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC---CCCceEEEEEEEcC--c
Q 035970 8 LEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT---DETSAIMIEIYAAA--W 82 (377)
Q Consensus 8 LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~---~~~s~L~VeVyD~d--~ 82 (377)
+.|.|+.|++.... .....++.+.+++ ....|.... .+..|.||..+.+.++...|+ .++..|.+++|..+ .
T Consensus 2 ivl~i~egr~F~~~-~~~~~vv~a~~ng-~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQR-PRHPIVVEAKFNG-ESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCC-CCccEEEEEEeCC-ceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 57889999988654 2446778889985 466675443 367899999999998865543 25677999999987 3
Q ss_pred CCCceeEEEEEEcccc---cCCcccCCCCCceeEEEEeeCCCCC---cceEEEEEEEEEecC
Q 035970 83 LKDALIGSVRVLISHL---FGTLTHNSSSSTRYVALQVRRPSGR---PQGILNLGITLLDNT 138 (377)
Q Consensus 83 ~~DdlIG~a~IpLs~L---~~~~~~~~~~~~~~v~y~Lrr~sGk---~~G~L~LsV~f~p~s 138 (377)
...+.||.+.++|..+ ... +......||+|..-+.+ ..=+|.|++.+.+..
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~-----~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEK-----NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred CcceeccEEEEEcccccccccc-----ccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 4578999999999988 222 22346689999975332 455788888887765
|
|
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.37 Score=41.09 Aligned_cols=102 Identities=17% Similarity=0.044 Sum_probs=55.5
Q ss_pred EEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC---CCCceEEEEEEEcCcCCCceeEEEEEEcccccCCccc
Q 035970 28 YSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT---DETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTH 104 (377)
Q Consensus 28 YVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~---~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~~~~ 104 (377)
||.+.+---..+.|.|+. +.+|.+|.+-.|.|....+- .....|.||++.--...-+.||.+.|+|..++....
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG- 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC-
Confidence 455554323467899886 58999999988887653210 134678999987653345799999999999985432
Q ss_pred CCCCCceeEEEEeeCCCCCcceEEEEEEEEEe
Q 035970 105 NSSSSTRYVALQVRRPSGRPQGILNLGITLLD 136 (377)
Q Consensus 105 ~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p 136 (377)
........|...+|..-|.|.+.+++..
T Consensus 79 ----~~i~~~~~l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 79 ----ERIHGSATLVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp ------EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred ----ceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence 1134566777778889999999988753
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.2 Score=50.43 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=58.7
Q ss_pred CCeEEEEEEEEeecCCCC----CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV----SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~----~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
-.+.|.|.++.+++|+-. +-.-+-|+++..+...+.+|.|.. ++.-=.|.|+|...|.. ...+.+-||.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs-~~~~f~w~e~F~~Dvv~------~~vl~~lvyS 121 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRS-SGPGFAWAEDFKHDVVN------IEVLHYLVYS 121 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCcccccccc-CCCCccchhhceeeccc------ceeeeEEEee
Confidence 357899999999999632 236789999999876777887754 35667799999998874 4688999999
Q ss_pred cCc-CCCce
Q 035970 80 AAW-LKDAL 87 (377)
Q Consensus 80 ~d~-~~Ddl 87 (377)
++. .+.++
T Consensus 122 W~pq~RHKL 130 (442)
T KOG1452|consen 122 WPPQRRHKL 130 (442)
T ss_pred cCchhhccc
Confidence 874 34443
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.32 Score=51.91 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=57.9
Q ss_pred EeecCC--CCCCCCCeEEEEEE--CCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC-C
Q 035970 14 SGHDLA--LVSKSMKTYSVAWV--DPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK-D 85 (377)
Q Consensus 14 SAkdL~--~~~g~~DPYVvV~L--~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~-D 85 (377)
.|.+|. +.++++|||..++- +.. ..++|.+.++ ++||.|-+ |.+.+...--.+....+.+++||++..+ +
T Consensus 144 ~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 144 RAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 355553 34688999998853 222 3467888765 89999987 3333322111123577889999998654 5
Q ss_pred ceeEEEEEEcccccC
Q 035970 86 ALIGSVRVLISHLFG 100 (377)
Q Consensus 86 dlIG~a~IpLs~L~~ 100 (377)
++||++..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999998864
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.7 Score=41.99 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=58.0
Q ss_pred eEEEEEEEEeecCCCC--CCCCCeEEEEEEC-CCC----eEEeEeeC--C-CCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 6 RVLEISIVSGHDLALV--SKSMKTYSVAWVD-PER----KLTTRVDQ--N-GLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 6 g~LeVtVISAkdL~~~--~g~~DPYVvV~L~-p~~----k~rTrV~k--~-gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
..+.|+|.+++++... ....|-||.+.|- +.. ...|+... + -...+.|||.+.|++.-..|- -.+.|.|
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LP-rearL~i 86 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLP-RESRLVL 86 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCC-hhHEEEE
Confidence 4688999999998643 2357888888662 222 22343221 1 123577999999987644431 2578999
Q ss_pred EEEEcCcC----------CCceeEEEEEEccc
Q 035970 76 EIYAAAWL----------KDALIGSVRVLISH 97 (377)
Q Consensus 76 eVyD~d~~----------~DdlIG~a~IpLs~ 97 (377)
.||+.... .+..||.+.++|=+
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99987533 24577777776654
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.86 Score=41.63 Aligned_cols=57 Identities=12% Similarity=0.249 Sum_probs=34.6
Q ss_pred eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc--CC--CceeEEEEEEccc
Q 035970 38 KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW--LK--DALIGSVRVLISH 97 (377)
Q Consensus 38 k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~--~~--DdlIG~a~IpLs~ 97 (377)
...|.|... +.+|.|+|+|.+.++.... ....|.|++++... .. +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l~--~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYH-NKNPQFNDEIKIQLPPDLF--PKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCCC--TTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEec-CCCCCccEEEEEEcCchhc--ccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 345656554 5899999999999986532 56789999998653 12 2799999999887
|
|
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.15 E-value=4.1 Score=37.84 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=66.4
Q ss_pred eEEEEEEEEeecCCC-CCCCCCeEEEEEE--CCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLAL-VSKSMKTYSVAWV--DPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~-~~g~~DPYVvV~L--~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..++|+|+.+..+.. .......||.+.| +.. ...+|....- +.++.|||-+.|++.-..|- -.+.|.|.||+.
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP-~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLP-KGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCC-hhhEEEEEEEEE
Confidence 357888888874321 1233456777644 321 1224443332 56799999999987655441 357899999996
Q ss_pred CcCC--CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCC-cceEEEEEEEEEecCC
Q 035970 81 AWLK--DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR-PQGILNLGITLLDNTM 139 (377)
Q Consensus 81 d~~~--DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk-~~G~L~LsV~f~p~s~ 139 (377)
.... ....|.. +.+... .....+..+.+.|.+.++. .+|...|.++-.+..+
T Consensus 88 ~~~~~~~~~~~~~--~~~~~~-----~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~~~~ 142 (178)
T cd08399 88 KAPALSSKKSAES--PSSESK-----GKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQISGKG 142 (178)
T ss_pred ecCcccccccccc--cccccc-----cccceEEEEEEEEEcCCCceecCCEEEEEecCCCcc
Confidence 3211 1111211 000000 0012234455555555442 4777888777766443
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.86 Score=41.28 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=48.7
Q ss_pred CCCCeEEEEEEC-CCCe----EEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-CCceeEEEEEEcc
Q 035970 23 KSMKTYSVAWVD-PERK----LTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLIS 96 (377)
Q Consensus 23 g~~DPYVvV~L~-p~~k----~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-~DdlIG~a~IpLs 96 (377)
..++-||.+.|- +... ..|+... -+..+.|||-+.|+|.-..|- -.+.|.|.||+.... ....||.+.++|=
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP-~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLP-RNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCC-hhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 357889998662 2221 2343322 246788999999987755441 257899999997643 4568998888765
Q ss_pred c
Q 035970 97 H 97 (377)
Q Consensus 97 ~ 97 (377)
+
T Consensus 106 d 106 (159)
T cd08397 106 N 106 (159)
T ss_pred C
Confidence 4
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=89.72 E-value=1.5 Score=39.85 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=56.0
Q ss_pred CCCeEEEEEECCCCeEEeEeeCC-CCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCCCceeEEEEEEcccccCC
Q 035970 24 SMKTYSVAWVDPERKLTTRVDQN-GLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGT 101 (377)
Q Consensus 24 ~~DPYVvV~L~p~~k~rTrV~k~-gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~DdlIG~a~IpLs~L~~~ 101 (377)
...-|++|.++.....+|+...- ....-.+||.|.+.|... -..|.|+||......+.+|+++.||+-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-----Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-----PESIKLEIYEKSGLSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-----CCEEEEEEEEccCccceEEEEEEeeCCCCccc
Confidence 45789999998766677765432 223355899999998763 37899999998888899999999998875443
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.1 Score=41.90 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=41.7
Q ss_pred CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC--C-CceeEEEEEEccc
Q 035970 37 RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL--K-DALIGSVRVLISH 97 (377)
Q Consensus 37 ~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~--~-DdlIG~a~IpLs~ 97 (377)
..++|-|... +.+|.|||++.+.|+.... ....|.|++++.-.. . ...+|.+.+||-+
T Consensus 53 se~~S~V~yH-~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYH-NNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEc-CCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 3567777665 5799999999999987543 567899988875421 2 2578877777743
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=88.07 E-value=1.6 Score=41.21 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=41.6
Q ss_pred CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc--CC---CceeEEEEEEcc
Q 035970 37 RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW--LK---DALIGSVRVLIS 96 (377)
Q Consensus 37 ~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~--~~---DdlIG~a~IpLs 96 (377)
...+|-|... +.+|.|||++.+.|+.... ....|.|++++.-. .. ...+|.+.+||-
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4567777554 5799999999999986543 56889999987542 12 357888888875
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=87.20 E-value=1.9 Score=37.75 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=38.6
Q ss_pred EeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC-C----ceeEEEEEEcccc
Q 035970 40 TTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK-D----ALIGSVRVLISHL 98 (377)
Q Consensus 40 rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~-D----dlIG~a~IpLs~L 98 (377)
.|+...-...++.|||.+.|++.-..|- ..+.|.|.||...... + ..||.+.++|=+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLP-REARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCC-hhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 4554432126899999999987654442 3578999999977543 3 6999999987653
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins | Back alignment and domain information |
|---|
Probab=84.78 E-value=3.5 Score=37.56 Aligned_cols=47 Identities=11% Similarity=0.297 Sum_probs=35.5
Q ss_pred CCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc------CCCceeEEEEEEccc
Q 035970 49 NNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW------LKDALIGSVRVLISH 97 (377)
Q Consensus 49 ~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~------~~DdlIG~a~IpLs~ 97 (377)
.+|.|+|+|.+.++... .....|.|++|+-.. .....+|.+.+||-+
T Consensus 63 k~p~f~deiKi~LP~~l--~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 63 KNPVFNDEIKIQLPADL--TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred CCCCCceeEEEecCCcc--CCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 79999999999996432 146789999998652 225688888888765
|
Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo |
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.48 E-value=0.29 Score=52.13 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=52.4
Q ss_pred ccccCCcchhhhhhhccccCCcchhhhhhccccccccccccc--------cccCCCcccccccCCcc
Q 035970 174 QNSKQSKDDQELERVLKPKDNSLSKAKLRRSQSDKTDLTSED--------YSKNSSHQAQQPTGTGS 232 (377)
Q Consensus 174 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 232 (377)
=.+|.+|.+.++|++|+ |...+.+.++.|.++|+..|+..| |+||.+.-.|.|--|.+
T Consensus 159 LarKk~Tg~iyAmK~Lk-KS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylP 224 (550)
T KOG0605|consen 159 LARKKDTGEIYAMKILK-KSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLP 224 (550)
T ss_pred EEEEccCCcEEeeeccc-HHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecC
Confidence 34667889999999999 788899999999999999999988 89999999999999975
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 377 | ||||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 5e-04 |
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 7e-11
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 27/145 (18%)
Query: 1 MVPPPRVLEISIVSGHDLALVSKSMKTYSVAWVDP-------ERKLTTRVDQNGLNNPSW 53
V +L++ ++ DL + S DP +L T LN P W
Sbjct: 8 DVKDVGILQVKVLKAADLL--AADFSGKS----DPFCLLELGNDRLQTHTVYKNLN-PEW 60
Query: 54 NEKFVFRVDDRFLTDETSAIMIEIY-AAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRY 112
N+ F F + D + + ++ +G V + + +
Sbjct: 61 NKVFTFPIKDI-----HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNC 108
Query: 113 VALQVRRPSGRPQGILNLGITLLDN 137
L+ + +G++ L + L+ N
Sbjct: 109 YVLKNKDLEQAFKGVIYLEMDLIYN 133
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 4e-10
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 31/148 (20%)
Query: 1 MVPPPRVLEISIVSGHDLALVSKSMKT-------------YSVAWVDPERKLTTRVDQNG 47
MV +L+I I L + S++ Y VD R T Q
Sbjct: 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60
Query: 48 LNNPSWNEKFVFRVDDRFLTDETSAIMIEIY-AAAWLKDALIGSVRVLISHLFGTLTHNS 106
+ P+W+++FV V + I + ++ A D + + + L L + S
Sbjct: 61 NS-PAWHDEFVTDVCN------GRKIELAVFHDAPIGYDDFVANCTIQFEEL---LQNGS 110
Query: 107 SSSTRYVALQVRRPSGRPQGILNLGITL 134
++ L+ P+G + + I L
Sbjct: 111 RHFEDWIDLE-------PEGKVYVIIDL 131
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-10
Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 18/145 (12%)
Query: 1 MVPPPRVLEISIVSGHDLA---LVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKF 57
P LE+ +VS L ++ Y + + + + G P WNE F
Sbjct: 5 SSGPHGTLEVVLVSAKGLEDADFLNNM-DPYVQLTCRTQDQKSNVAEGMGTT-PEWNETF 62
Query: 58 VFRVDDRFLTDETSAIMIEIYAA-AWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQ 116
+F V + T+ + +I+ +D +G + + +F +
Sbjct: 63 IFTVSEG-----TTELKAKIFDKDVGTEDDAVGEATIPLEPVF-------VEGSIPPTAY 110
Query: 117 VRRPSGRPQGILNLGITLLDNTMRS 141
+G + + ++ + S
Sbjct: 111 NVVKDEEYKGEIWVALSFKPSGPSS 135
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 6e-09
Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 28/141 (19%)
Query: 7 VLEISIVSGHDLALVSKSMKT------------YSVAWVDPERKLTTRVDQNGLNNPSWN 54
L + I L S++ Y VD R T Q P++N
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNK-PTYN 88
Query: 55 EKFVFRVDDRFLTDETSAIMIEIY-AAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYV 113
E+F V D + + ++ D + + + L T + +
Sbjct: 89 EEFCANVTD------GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWV- 141
Query: 114 ALQVRRPSGRPQGILNLGITL 134
P+G + + ITL
Sbjct: 142 -------DLEPEGKVFVVITL 155
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 27/148 (18%)
Query: 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWVDP-------------ERKLTTRVDQNGLN 49
RV+ + +++G LA K + S DP + T+ + LN
Sbjct: 5 DDTRVVRVKVIAGIGLA--KKDILGAS----DPYVRVTLYDPMSGILTSVQTKTIKKSLN 58
Query: 50 NPSWNEKFVFRVDDRFLTDETSAIMIEIYAA-AWLKDALIGSVRVLISHLF-GTLTHNSS 107
P WNE+ +FRV + I+ E++ +D +G V V + L
Sbjct: 59 -PKWNEEILFRVL-----PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERP 112
Query: 108 SSTRYVALQVRRPSGRPQGILNLGITLL 135
+ + L R R +G L L +T L
Sbjct: 113 YTFKDFVLHPRSHKSRVKGYLRLKMTYL 140
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 8 LEISIVSGHDLALVSKSMKT-----YSVAWV--DPERKLTTRVDQNGLNNPSWNEKFVFR 60
+ ++ + + Y ++ P+ + TR N +N P WNE F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN-PVWNETFEFI 63
Query: 61 VDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHL 98
+D + + + I + A ++ D +G+ +S +
Sbjct: 64 LDPN----QENVLEITLMDANYVMDETLGTATFTVSSM 97
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 28/148 (18%)
Query: 1 MVPPPRVLEISIVSGHDLALVSKSMKT--YSVAWVDPERKLTTRVDQNGLNNPSWNEKFV 58
+ I++V L K+ + Y V +K T + N LN P W E F
Sbjct: 12 TSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN-LN-PVWEENFH 69
Query: 59 FRVDDRFLTDETSAIMIEIY------------AAAWLKDALIGSVRVLISHLFGTLTHNS 106
F + + I + + D +G + + L G
Sbjct: 70 FECH-----NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE----- 119
Query: 107 SSSTRYVALQVRRPSGRPQGILNLGITL 134
+ L R G + L I++
Sbjct: 120 --MDVWYNLDKRTDKSAVSGAIRLHISV 145
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-08
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 11/145 (7%)
Query: 2 VPPPRVLEISIVSGHDLALVSKSMKT--YSVAWVDPERKLTTRVDQNGLNNPSWNEKFVF 59
+ L+I+++S Y VD + K T N + P W +
Sbjct: 32 LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSK-KTEKCNNTNS-PKWKQPLTV 89
Query: 60 RVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118
V S + +++ L D L+G+ + I + + L
Sbjct: 90 IVTPV------SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143
Query: 119 RPSGRPQGILNLGITLLDNTMRSMP 143
+ G L++ + L +
Sbjct: 144 KEPTETIGDLSICLDGLQLESEVVT 168
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-07
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDP-------------ERKLTTRVDQNGLNN 50
R++ + +++G LA K + S DP + T+ + LN
Sbjct: 18 NSRIVRVRVIAGIGLA--KKDILGAS----DPYVRVTLYDPMNGVLTSVQTKTIKKSLN- 70
Query: 51 PSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHLF-GTLTHNSSS 108
P WNE+ +FRV + ++ E++ L +D +G V V + L
Sbjct: 71 PKWNEEILFRVH-----PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPY 125
Query: 109 STRYVALQVRRPSGRPQGILNLGITLL 135
+ + L R R +G L L +T L
Sbjct: 126 TFKDFVLHPRSHKSRVKGYLRLKMTYL 152
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 2e-06
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 3 PPPRVLEISIVSGHDLALVSKSMKT-----YSVAWV--DPERKLTTRVDQNGLNNPSWNE 55
+ ++ + + Y ++ P+ + TR N +N P WNE
Sbjct: 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN-PVWNE 73
Query: 56 KFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISH 97
F F +D ++ + + I + A ++ D +G+ +S
Sbjct: 74 TFEFILDP----NQENVLEITLMDANYVMDETLGTATFTVSS 111
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 4e-06
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 12/111 (10%)
Query: 6 RVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRF 65
+L + + K TY V K TT + + PSW + F+F ++
Sbjct: 5 SLLCVGVKKAKFDGAQEK-FNTYVTLKVQ-NVKSTTIAVRG--SQPSWEQDFMFEIN--- 57
Query: 66 LTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQ 116
+ +E++ + D ++G+V + + + N ++ L
Sbjct: 58 --RLDLGLTVEVWNKGLIWDTMVGTVWIPLRTI---RQSNEEGPGEWLTLD 103
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 15/145 (10%)
Query: 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWV------DPERKLTTRVDQNGLNNPSWNEK 56
L + I+ DL +K +S +V D ++K T+V + LN P +NE
Sbjct: 17 YGSDQLVVRILQALDLP--AKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLN-PIFNET 73
Query: 57 FVFRVDDRFLTDETSAIMIEIYAA-AWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVAL 115
F F V L + +Y + + LIG V + +L +
Sbjct: 74 FQFSVPLAELAQRK--LHFSVYDFDRFSRHDLIGQVV--LDNLLELAEQPPDRPLWRD-I 128
Query: 116 QVRRPSGRPQGILNLGITLLDNTMR 140
G LN + L
Sbjct: 129 LEGGSEKADLGELNFSLCYLPTAGL 153
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 6e-06
Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 12/113 (10%)
Query: 6 RVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRF 65
+L + + + TY V + TT + + PSW + F+F ++
Sbjct: 14 SLLCVGVKKAKFDG-AQEKFNTYVTLKVQN-VESTTIAVRG--SQPSWEQDFMFEINRL- 68
Query: 66 LTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118
+ +E++ + D ++G+V + + + N ++ L +
Sbjct: 69 ----DLGLTVEVWNKGLIWDTMVGTVWIPLRTI---RQSNEEGPGEWLTLDSQ 114
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 25/104 (24%)
Query: 7 VLEISIVSGHDLA--LVSKSMKTYSVAWVDP-------ERKLTTRVDQNGLNNPSWNEKF 57
+L + + S ++ K DP + K T+ N LN P WNE
Sbjct: 8 MLRVIVESASNIPKTKFGKP---------DPIVSVIFKDEKKKTKKVDNELN-PVWNEIL 57
Query: 58 VFRVDDRFLTDETSAIMIEIYAAAW---LKDALIGSVRVLISHL 98
F + L D +S++ I + + ++ LIG+ V + L
Sbjct: 58 EFDLRGIPL-DFSSSLGIIVK--DFETIGQNKLIGTATVALKDL 98
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 3 PPPRVLEISIVSGHDLALVSKSMKT--YSVAWVDPERKL-TTRVDQNGLNNPSWNEKFVF 59
+ ++++ +LA ++ VD + +T +N L+ P WN+ +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLD-PKWNQHYDL 60
Query: 60 RVDDRFLTDETSAIMIEIYAAAWLKD----ALIGSVRVLISHL 98
V T +I I ++ + +G VR+L + +
Sbjct: 61 YVGK------TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAI 97
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWV------DPERKLTTRVDQNGLNNPSWNEK 56
L + I+ +L + M S +V D ++K T+V + LN P +NE+
Sbjct: 16 FQNNQLLVGIIQAAELP--ALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN-PVFNEQ 72
Query: 57 FVFRVDDRFLTDETSAIMIEIYAA-AWLKDALIGSVRVLISHL 98
F F+V L +T +++ +Y + K +IG +V ++ +
Sbjct: 73 FTFKVPYSELAGKT--LVMAVYDFDRFSKHDIIGEFKVPMNTV 113
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-05
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 20/130 (15%)
Query: 6 RVLEISIVSGHDLALVSKSM-----KTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFR 60
RVL + I+ G L K + R T+ + + P+++E F F
Sbjct: 27 RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRD-PAFHEHFFFP 85
Query: 61 VDDRFLTDETSAIMIEI--YAAAWLKDALIGSVRVLISHLFG---------TLTHNSSSS 109
V D+ +++ + A+ + LIG + + L L
Sbjct: 86 VQ---EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGR 142
Query: 110 TRYVALQVRR 119
T+++ + RR
Sbjct: 143 TKHLKVARRR 152
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 9e-05
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 5/95 (5%)
Query: 6 RVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLN--NPSWNEKFVFRVDD 63
VL++ I+ +L + Y +D T + W E F F
Sbjct: 11 NVLKLWIIEARELPPKKR---YYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 64 RFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHL 98
K +G V V ++ L
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 40/233 (17%), Positives = 66/233 (28%), Gaps = 63/233 (27%)
Query: 16 HDLALVSKS----MKTYSVAWVDPERKLTTRVDQNGLNNPS----WNEKFVFRVDDRFL- 66
L++ S S+ W D + V N L+ S ++ + +L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 67 -----TDETS--AIMIEIYAA--AWLKDAL------------IGSVRVLISHLFGTLTHN 105
+E + +++ Y + D L IG HL
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH------HLKNIEHPE 488
Query: 106 SSSSTRYVALQVR------RPSG----RPQGILNLGITL---LDNTMRSMPLFAELCGAG 152
+ R V L R R ILN L + P + L A
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 153 ANFSEVSSGANDVMKPETTTAQNSKQSKDDQELERVLKPKDNSLSKAKLRRSQ 205
+F + K E N SK L L +D ++ + ++ Q
Sbjct: 549 LDF---------LPKIEE----NLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 6 RVLEISIVSGHDLALVSKS------MKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVF 59
L + I+ +L + +K + + D ++K T+V + LN P +NE+F F
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLP--DKKKKFETKVHRKTLN-PVFNEQFTF 90
Query: 60 RVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHL 98
+V L +T +++ +Y K +IG +V ++ +
Sbjct: 91 KVPYSELGGKT--LVMAVYDFDRFSKHDIIGEFKVPMNTV 128
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 34 DPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVR 92
D + T V + P + E++ F + T +++ + + +IG V
Sbjct: 65 DQKNSKQTGVKRKTQK-PVFEERYTFEIPFLEAQRRT--LLLTVVDFDKFSRHCVIGKVS 121
Query: 93 VLISHL 98
V + +
Sbjct: 122 VPLCEV 127
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 9e-04
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 5 PRVLEISIVSGHDLALVSKS------MKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFV 58
VL + + +L + + +K + E K T+ + LN P WNE F
Sbjct: 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLN-PEWNETFR 88
Query: 59 FRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGT 101
F++ + +D+ + +EI+ ++ +GS+ IS L
Sbjct: 89 FQLKE---SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 129
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.83 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.82 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.81 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.8 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.8 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.8 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.8 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.79 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.79 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.78 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.77 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.76 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.74 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.69 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.68 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.68 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.68 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.68 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.68 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.68 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.68 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.68 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.67 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.67 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.67 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.66 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.66 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.66 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.65 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.65 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.64 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.64 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.63 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.63 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.63 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.62 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.61 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.6 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.58 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.53 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.46 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.45 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.45 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.43 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.43 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.41 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.38 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.3 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.13 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.72 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.6 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 95.01 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 87.57 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 87.12 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 84.86 |
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=155.49 Aligned_cols=124 Identities=20% Similarity=0.307 Sum_probs=104.9
Q ss_pred CCCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 2 VPPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 2 ~~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..+.+.|+|+|++|++|+.. .+.+||||++++++ .+++|+++++++.||+|||+|.|.+.+ ....|.|+|||
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~-----~~~~l~~~V~d 79 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSE-----GTTELKAKIFD 79 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEES-----SCCEEEEEECC
T ss_pred CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC-ccceeEeccCCCCCCccCcEEEEEECC-----CCCEEEEEEEE
Confidence 35678999999999999754 57899999999986 477999887458999999999999986 25799999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
++.+ .|++||++.|+|.++.... .....||+|. ++++..|+|+|++.|.+..
T Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~w~~L~-~~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 80 KDVGTEDDAVGEATIPLEPVFVEG------SIPPTAYNVV-KDEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHS------EEEEEEEEEE-ETTEEEEEEEEEEEEEECC
T ss_pred CCCCCCCceEEEEEEEHHHhccCC------CCCcEEEEee-cCCccCEEEEEEEEEEeCC
Confidence 9966 6999999999999985432 1235799998 6778999999999999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-19 Score=149.21 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=102.6
Q ss_pred CCCeEEEEEEEEeecCCCCC-CCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 3 PPPRVLEISIVSGHDLALVS-KSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~~-g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
...+.|+|+|++|++|+... +.+||||++++++ .+++|+++++ +.||+|||+|.|.+....+ +....|.|+|||++
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~-~~~kT~v~~~-t~nP~wne~f~f~v~~~~~-~~~~~l~i~V~d~d 80 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKD-EKKKTKKVDN-ELNPVWNEILEFDLRGIPL-DFSSSLGIIVKDFE 80 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSS-CEEECCCCCS-CSSCEEEEEEEEECSSCCC-CTTCEEEEEEEETT
T ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECC-EeEEeeeecC-CCCCccCcEEEEEeccccc-CCCCEEEEEEEECC
Confidence 34689999999999997532 7899999999985 5789999875 7999999999999976432 23578999999999
Q ss_pred cC-CCceeEEEEEEcccccCCcccCCCCCceeEEEE---eeCCCC-CcceEEEEEEEEEecC
Q 035970 82 WL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQ---VRRPSG-RPQGILNLGITLLDNT 138 (377)
Q Consensus 82 ~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~---Lrr~sG-k~~G~L~LsV~f~p~s 138 (377)
.+ .|++||++.|+|.++..... ...||. |.++.+ ...|+|+|.+.|.+.+
T Consensus 81 ~~~~~~~lG~~~i~l~~l~~~~~-------~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 81 TIGQNKLIGTATVALKDLTGDQS-------RSLPYKLISLLNEKGQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp CSSSCCCCEEEEEEGGGTCSSSC-------EEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred CCCCCceEEEEEEEHHHhccCCC-------ceeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence 76 68999999999999866532 245766 776554 5789999999999865
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=151.55 Aligned_cols=119 Identities=16% Similarity=0.290 Sum_probs=101.3
Q ss_pred CCCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 2 VPPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 2 ~~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..+.+.|+|+|++|++|+.. .+.+||||++++++ .+++|+++++ +.||.|||+|.|.+.+. ...|.|+|||
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~-t~nP~wne~f~f~~~~~-----~~~l~i~V~d 81 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYK-NLNPEWNKVFTFPIKDI-----HDVLEVTVFD 81 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSS-CSSCCCCEEEEEEESCT-----TCEEEEEEEE
T ss_pred cCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-EEEEeeeecC-CCCCccccEEEEEecCC-----CCEEEEEEEE
Confidence 46789999999999999754 57899999999986 5789999876 79999999999999853 4789999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEEe
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLLD 136 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~p 136 (377)
++.+ .|++||++.|+|.++..+. ..||+|..+. +...|+|+|.+.|..
T Consensus 82 ~d~~~~~~~lG~~~i~l~~l~~~~---------~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 82 EDGDKPPDFLGKVAIPLLSIRDGQ---------PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp EETTEEEEECCBCEEEGGGCCSSC---------CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCCeeEEEEEEHHHccCCC---------ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 9976 5999999999999986532 2699988654 468999999999874
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-19 Score=151.08 Aligned_cols=127 Identities=21% Similarity=0.373 Sum_probs=99.0
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC-----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE-----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~-----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
...+.|+|+|++|++|+.. .+.+||||++++.+. .+++|+++++ +.||+|||+|.|.+... ...|.|
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~-----~~~l~~ 90 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHPQ-----QHRLLF 90 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECTT-----TCEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccC-CCCCCCCCEEEEEecCC-----CCEEEE
Confidence 3567999999999999753 578999999999742 4678999876 79999999999999853 478999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC--CCCcceEEEEEEEEEe
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP--SGRPQGILNLGITLLD 136 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~--sGk~~G~L~LsV~f~p 136 (377)
+|||++.+ .|++||++.|+|.++...... ....+...||+|... .++..|+|+|+++|.|
T Consensus 91 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~-~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 91 EVFDENRLTRDDFLGQVDVPLYPLPTENPR-LERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp EEEECCSSSCCEEEEEEEEECCSCCBCCTT-SCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred EEEECCCCcCCCeeEEEEEEHHHcccCCCc-ccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 99999976 689999999999998765431 012233579999754 3478999999999975
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=144.46 Aligned_cols=115 Identities=17% Similarity=0.316 Sum_probs=93.8
Q ss_pred CeEEEEEEEEeecCCCC-----CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALV-----SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~-----~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
.+.|+|+|++|++|+.. .+.+||||++++.+ ..+++|+++++ +.||+|||+|.|.+... ....|.|+|
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~----~~~~l~i~V 76 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN----QENVLEITL 76 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT----SCCEEEEEE
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCC-CCCCcccceEEEEecCC----CCCEEEEEE
Confidence 57899999999999863 47899999999986 37889999875 79999999999999653 357899999
Q ss_pred EEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEE
Q 035970 78 YAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITL 134 (377)
Q Consensus 78 yD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f 134 (377)
||++.++|++||++.|+|.++..+.. ...||+|.. ...|.|+|.+..
T Consensus 77 ~d~d~~~~~~iG~~~i~l~~l~~~~~-------~~~~~~L~~---~~~g~i~~~le~ 123 (126)
T 1rlw_A 77 MDANYVMDETLGTATFTVSSMKVGEK-------KEVPFIFNQ---VTEMVLEMSLEV 123 (126)
T ss_dssp EECCSSCCEEEEEEEEEGGGSCTTCE-------EEEEEEETT---TEEEEEEEEEEC
T ss_pred EECCCCCCceeEEEEEEHHHccCCCc-------EEEEEEcCC---CceEEEEEEEEe
Confidence 99998889999999999999875533 357998863 345666665543
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=149.94 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=97.9
Q ss_pred CCCCCeEEEEEEEEeecCCCC--CC-----------CCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC
Q 035970 1 MVPPPRVLEISIVSGHDLALV--SK-----------SMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT 67 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~~~--~g-----------~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~ 67 (377)
|+...+.|+|+|++|++|++. .+ .+||||++++++....+|++.++ +.||+|||+|.|.+..
T Consensus 1 m~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~---- 75 (136)
T 1gmi_A 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCN---- 75 (136)
T ss_dssp CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE----
T ss_pred CcccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECC-CcCCccCCEEEEEecC----
Confidence 677789999999999999753 22 38999999998655568888765 7999999999999975
Q ss_pred CCCceEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEec
Q 035970 68 DETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDN 137 (377)
Q Consensus 68 ~~~s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~ 137 (377)
...|.|+|||++.+ .|++||.+.|+|.++..... .....|+.|. ++|+|+|.++|.+.
T Consensus 76 --~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~-----~~~~~w~~L~-----~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 76 --GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS-----RHFEDWIDLE-----PEGKVYVIIDLSGS 134 (136)
T ss_dssp --ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC-----SEEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred --CCEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCC-----CCccEEEEcC-----CCeEEEEEEEEEec
Confidence 27899999999965 58999999999999876421 1235788775 48999999999875
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=158.18 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=97.0
Q ss_pred CCCCCeEEEEEEEEeecCCCC------------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCC
Q 035970 1 MVPPPRVLEISIVSGHDLALV------------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTD 68 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~~~------------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~ 68 (377)
|+...+.|+|+|++|++|+.. .+.+||||+|.+++....+|++.++ +.||+|||+|.|.|.+
T Consensus 24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~----- 97 (157)
T 2fk9_A 24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTD----- 97 (157)
T ss_dssp CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE-----
T ss_pred hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCC-----
Confidence 556678999999999999753 1578999999998655578998765 8999999999999975
Q ss_pred CCceEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 69 ETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 69 ~~s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
...|.|+|||++.+ .|++||.+.|+|.++..... .......||+|. ++|.|+|.+.|.
T Consensus 98 -~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~---~~~~~~~W~~L~-----~~G~i~l~l~~~ 156 (157)
T 2fk9_A 98 -GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTG---ASDTFEGWVDLE-----PEGKVFVVITLT 156 (157)
T ss_dssp -ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHT---TCSEEEEEEECB-----SSCEEEEEEEEC
T ss_pred -CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccC---CCCcccEEEECC-----CCcEEEEEEEEE
Confidence 36899999999876 58999999999999875410 012346899985 389999999874
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=147.21 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=97.3
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
...+.|+|+|++|++|+. ..+.+||||+++++ ..+++|+++++ +.||.|||+|.|.+... ...|.|+|||+
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~~~~~-t~nP~Wne~f~f~v~~~-----~~~l~~~v~d~ 86 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG-KTKKRTKTIYG-NLNPVWEENFHFECHNS-----SDRIKVRVLDE 86 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-TEEEECCCCCS-CSSCEEEEEEEEEECST-----TCEEEEEEEEC
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC-CEEEECCccCC-CCCCCcccEEEEEecCC-----CCEEEEEEEEC
Confidence 446899999999999975 36899999999997 46889999875 79999999999999763 47899999999
Q ss_pred CcC------------CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEE
Q 035970 81 AWL------------KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLL 135 (377)
Q Consensus 81 d~~------------~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~ 135 (377)
+.. .|++||++.|+|.++... ...||+|.... +...|+|+|.++|.
T Consensus 87 d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~---------~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 87 DDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE---------MDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp CCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCSE---------EEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred CCCccccccccccCCCCccEEEEEEEHHHCcCC---------CCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 963 699999999999998332 24799998543 45789999999884
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=152.99 Aligned_cols=128 Identities=23% Similarity=0.378 Sum_probs=99.1
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC-----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE-----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~-----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
...+.|+|+|++|++|+. ..+.+||||+|++.+. .+++|+|+++ +.||+|||+|.|.+... ...|.|
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~-----~~~L~~ 78 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILFRVLPQ-----RHRILF 78 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSS-CSSCEEEEEEEEEECTT-----TCEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECC-CCCCcccceEEEEEcCC-----CCEEEE
Confidence 457899999999999974 4588999999999742 4678999875 89999999999999853 468999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC--CCCCcceEEEEEEEEEec
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR--PSGRPQGILNLGITLLDN 137 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr--~sGk~~G~L~LsV~f~p~ 137 (377)
+|||++.+ .|+|||++.|+|.++...... .+..+...||+|.. ..++..|+|+|++.|.+.
T Consensus 79 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 79 EVFDENRLTRDDFLGQVDVPLYPLPTENPR-MERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp EEEECC----CEEEEEEEEESCSCCBC-------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred EEEECCCCCCCcEEEEEEEEHHHccccCCc-ccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 99999866 689999999999999765431 01122337999885 345789999999999987
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=150.47 Aligned_cols=121 Identities=13% Similarity=0.230 Sum_probs=85.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
+.+.|.|+|++|++|.. .+.+||||+++. +..+|++++.++.||+|||+|.|.+... ...|.|+|||++..
T Consensus 3 ~~~~L~V~V~~A~~l~~-~g~~DPYv~v~~---~~~kt~~~~~~t~nP~WnE~f~f~v~~~-----~~~L~~~V~D~d~~ 73 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA-QEKFNTYVTLKV---QNVKSTTIAVRGSQPSWEQDFMFEINRL-----DLGLTVEVWNKGLI 73 (131)
T ss_dssp CCEEEEEEEEEEECSSC-GGGCEEEEEEEE---TTEEEECCCEESSSCEEEEEEEEEECCC-----SSEEEEEEEECCSS
T ss_pred cceEEEEEEEEeECCCC-CCCcCeEEEEEe---cCEEEeEecCCCCCceECCEEEEEEeCC-----CCeEEEEEEECCCC
Confidence 46899999999998853 678999999992 3445666554579999999999999853 45799999999955
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceE-------EEEEEEE
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGI-------LNLGITL 134 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~-------L~LsV~f 134 (377)
.|++||++.|+|.++..... .+...+..++|.+..++|+.+|+ +.+.++|
T Consensus 74 ~dd~iG~~~i~l~~l~~~~~-~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 74 WDTMVGTVWIPLRTIRQSNE-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp CEEEEEEEEEEGGGSCBCSS-CCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred CCCeEEEEEEEHHHhhhcCC-CCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 79999999999999875532 11223445567766677777776 7777776
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-18 Score=151.89 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=101.0
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
..+.|+|+|++|++|... .+.+||||+|++++ .+++|+|+++ +.||+|||+|.|.+.+ ...|.|+|||++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-~~~kT~v~~~-tlnP~Wne~f~f~v~~------~~~L~~~V~D~d 105 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNN-TNSPKWKQPLTVIVTP------VSKLHFRVWSHQ 105 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSS-CSSCEEEEEEEEEECT------TCEEEEEEEECC
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-EEeEccccCC-CCCCeECCEEEEEeCC------CCEEEEEEEECC
Confidence 567899999999999732 34599999999986 7889999875 7999999999999963 578999999999
Q ss_pred cC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEEecCCCC
Q 035970 82 WL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLLDNTMRS 141 (377)
Q Consensus 82 ~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~p~s~~s 141 (377)
.+ .|++||++.|+|.++...... .......|++|...+ .+..|+|.|.+.+.+..+..
T Consensus 106 ~~~~dd~lG~~~i~l~~l~~~~~~--~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~~~~ 166 (173)
T 2nq3_A 106 TLKSDVLLGTAALDIYETLKSNNM--KLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLESEV 166 (173)
T ss_dssp SSSCCEEEEEEEEEHHHHHHHTTT--EESSEEEEEEEEESSCTTSEEEEEEEEEESEECC---
T ss_pred CCCCCceEEEEEEEHHHhcccCCC--CcceeEEEEECccCCCCCcccEEEEEEEeeeecchhh
Confidence 76 688999999999998764321 011125689988653 36799999999998775433
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-18 Score=141.34 Aligned_cols=118 Identities=16% Similarity=0.296 Sum_probs=94.0
Q ss_pred CCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC-CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 4 PPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP-ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p-~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
....|+|+|++|++|.. ..+.+||||++++++ ..+.+|+++++ +.||+|||+|.|.+... ..|.|+|||+
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~------~~l~~~v~d~ 75 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGKT------DSITISVWNH 75 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSS-CSSCEEEEEEEEEEETT------CCEEEEEEEG
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCC-CCCCCccCEEEEEeCCC------CEEEEEEEEC
Confidence 45789999999999964 457899999999975 47889999865 89999999999999763 3599999999
Q ss_pred CcCC----CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC----CCcceEEEEEEEE
Q 035970 81 AWLK----DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS----GRPQGILNLGITL 134 (377)
Q Consensus 81 d~~~----DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s----Gk~~G~L~LsV~f 134 (377)
+.++ |+|||++.|++.++..... . ...+++|.... .+..|+|+|.+.+
T Consensus 76 d~~~~~~~d~~lG~~~i~l~~l~~~~~----~--~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 76 KKIHKKQGAGFLGCVRLLSNAISRLKD----T--GYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp GGTTSSTTTTEEEEEEECHHHHHHHTT----S--CCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCCCCCCceEEEEEeHHHhhcccc----c--CcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 9764 7999999999998843321 1 13578887542 2469999999875
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=147.16 Aligned_cols=124 Identities=12% Similarity=0.188 Sum_probs=94.6
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
..+.|.|+|++|++|. ..+.+||||+|+ . +..+|++++.++.||+|||+|.|.+... ...|.|+|||++..
T Consensus 12 ~~~~L~V~V~~A~~l~-~~g~~DPYV~v~-~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~-----~~~L~~~V~D~d~~ 82 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG-AQEKFNTYVTLK-V--QNVESTTIAVRGSQPSWEQDFMFEINRL-----DLGLTVEVWNKGLI 82 (167)
T ss_dssp CCCEEEEEEEEEECSS-CGGGCEEEEEEE-E--TTEEEECCCEESSSCEEEEEEEEECCCT-----TSEEEEEEEECCSS
T ss_pred ceEEEEEEEEEEECCC-CCCCCCeEEEEE-e--cceEEEEecCCCCCCCCCCEEEEEeeCC-----CCEEEEEEEECCCC
Confidence 4679999999999884 467899999999 2 3456776654579999999999999853 46799999999955
Q ss_pred CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceE-------EEEEEEEEec
Q 035970 84 KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGI-------LNLGITLLDN 137 (377)
Q Consensus 84 ~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~-------L~LsV~f~p~ 137 (377)
.|++||++.|+|.++..... .....+...+|.+..++|+.+|+ |.+.++|...
T Consensus 83 ~dd~iG~~~i~L~~l~~~~~-~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~ 142 (167)
T 2cjs_A 83 WDTMVGTVWIPLRTIRQSNE-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP 142 (167)
T ss_dssp CCEEEEEEEEEGGGSCBCSS-CCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred CCceEEEEEEEHHHhcccCc-CCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence 79999999999999875432 11123456778777777766654 6677777544
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=134.80 Aligned_cols=106 Identities=17% Similarity=0.279 Sum_probs=85.3
Q ss_pred CeEEEEEEEEeecCCC-CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLAL-VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~-~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~VeVy 78 (377)
.+.|+|+|++|++|+. .++.+||||++++.+ ..+.+|+++++ +.||+|||+|.|. +....+ ....|.|+||
T Consensus 19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~~v~~~~l--~~~~L~~~V~ 95 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRK-TRNPTFNEMLVYSGYSKETL--RQRELQLSVL 95 (134)
T ss_dssp TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCS-CSSCEEEEEEEEESCCHHHH--TTCEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcC-CCCCCCccEEEECCcCHHHh--CcCEEEEEEE
Confidence 4689999999999974 357899999999943 35789999875 8999999999999 764322 3478999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|++.+ .|++||++.|+|.++..... ...||+|...
T Consensus 96 d~d~~~~~~~lG~~~i~l~~l~~~~~-------~~~W~~L~~~ 131 (134)
T 2b3r_A 96 SAESLRENFFLGGITLPLKDFNLSKE-------TVKWYQLTAA 131 (134)
T ss_dssp ECCSSSCCEEEEEEEEEGGGSCTTSC-------EEEEEECBC-
T ss_pred ECCCCCCCcEEEEEEEEhhhccCCCC-------cceeEECCCc
Confidence 99976 58999999999999866422 3579998743
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=134.73 Aligned_cols=107 Identities=20% Similarity=0.323 Sum_probs=86.8
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
+..+.|+|+|++|++|+.. .+.+||||++++.+ ..+++|+++++ +.||+|||+|.|.+....+ ....|.|+||
T Consensus 31 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~V~ 107 (143)
T 3f04_A 31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--GGKTLVMAVY 107 (143)
T ss_dssp TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCS-CSSCEEEEEEEECCCHHHH--TTCEEEEEEE
T ss_pred CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcC-CCCCcCcCeEEEeecHhhc--CCCEEEEEEE
Confidence 3567899999999999754 57899999999953 35789998875 7999999999999875322 2478999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
|++.+ .|++||++.|+|.++..... ...||+|..
T Consensus 108 d~d~~~~~~~iG~~~i~l~~l~~~~~-------~~~W~~L~~ 142 (143)
T 3f04_A 108 DFDRFSKHDIIGEFKVPMNTVDFGHV-------TEEWRDLQS 142 (143)
T ss_dssp ECCSSSCCEEEEEEEEEGGGCCTTSC-------EEEEEECBC
T ss_pred eCCCCCCCceEEEEEEEHHHccCCCC-------cceEEECcC
Confidence 99976 68999999999999866432 357998863
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=131.70 Aligned_cols=105 Identities=15% Similarity=0.306 Sum_probs=81.1
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEe-ccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRV-DDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V-~~~~L~~~~s~L~V 75 (377)
+..+.|+|+|++|++|+.. .+.+||||++++.+ ..+.+|+++++ +.||+|||+|.|.+ ....+ ....|.|
T Consensus 15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~~ 91 (129)
T 2bwq_A 15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEI 91 (129)
T ss_dssp TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGG--GGCEEEE
T ss_pred cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccC-CCCCccccEEEEccCCHHHh--cCCeEEE
Confidence 3467899999999999754 57899999999943 36789999875 79999999999995 32211 2468999
Q ss_pred EEEEcCcCC---CceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 76 EIYAAAWLK---DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 76 eVyD~d~~~---DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
+|||++.++ |++||++.|+|.++.... ...||+|.
T Consensus 92 ~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~--------~~~W~~Lq 129 (129)
T 2bwq_A 92 TLWDQARVREEESEFLGEILIELETALLDD--------EPHWYKLQ 129 (129)
T ss_dssp EEEEC-------CEEEEEEEEEGGGCCCSS--------CEEEEECC
T ss_pred EEEECCcCcCcCCceeEEEEEEccccCCCc--------CCccEECc
Confidence 999999764 899999999999986532 24798873
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-17 Score=135.71 Aligned_cols=113 Identities=17% Similarity=0.325 Sum_probs=88.4
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEe-ccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRV-DDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V-~~~~L~~~~s~L~V 75 (377)
+..+.|+|+|++|++|+.. .+.+||||++++.+ ..+++|+++++ +.||+|||+|.|.+ ....+ ....|.|
T Consensus 18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~i 94 (141)
T 1v27_A 18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEI 94 (141)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGG--GTCEEEE
T ss_pred CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccC-CCCCccccEEEEccCCHHHh--cCCEEEE
Confidence 3457899999999999754 57899999999943 35788998876 89999999999994 43222 3478999
Q ss_pred EEEEcCcCC---CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC-CCCcce
Q 035970 76 EIYAAAWLK---DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP-SGRPQG 126 (377)
Q Consensus 76 eVyD~d~~~---DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~-sGk~~G 126 (377)
+|||++.++ |++||++.|+|.++.... ...||+|... +|+..|
T Consensus 95 ~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~--------~~~W~~L~~~~~g~~sg 141 (141)
T 1v27_A 95 TLWDQARVREEESEFLGEILIELETALLDD--------EPHWYKLQTHDSGPSSG 141 (141)
T ss_dssp EEEEBCSSSSCCBCCCEEEEEEGGGCCCSS--------EEEEEECBCCSSCCCCC
T ss_pred EEEECCCCcCCCCceEEEEEEEccccCCCC--------CCceEECcccccCCCCC
Confidence 999999764 899999999999986532 3579999864 344443
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=135.08 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=86.3
Q ss_pred CeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
.+.|+|+|++|++|+.. .+.+||||++++.+ ..+++|+++++ +.||+|||+|.|.+....+ ...|.|+||
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~---~~~L~i~V~ 105 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDK---DRRLSVEIW 105 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGG---GCEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCC-CCCCcCCcEEEEEeccccC---CCEEEEEEE
Confidence 46799999999999754 57899999999974 36789999876 8999999999999976422 357999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|++.+ .|++||++.|+|.++.... ...||+|...
T Consensus 106 d~d~~~~~~~iG~~~i~l~~l~~~~--------~~~W~~L~~~ 140 (149)
T 1a25_A 106 DWDLTSRNDFMGSLSFGISELQKAG--------VDGWFKLLSQ 140 (149)
T ss_dssp ECCSSSCCEEEEEEEEEHHHHTTCC--------EEEEEECBCH
T ss_pred ECCCCCCCCEEEEEEEEHHHhCcCc--------cCCeEEccCC
Confidence 99976 6899999999999986542 3479999753
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=135.83 Aligned_cols=107 Identities=20% Similarity=0.336 Sum_probs=86.9
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..+.|+|+|++|++|+.. .+.+||||++++.+ ..+++|+++++ +.||+|||+|.|.+....+ ....|.|+|||
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~V~d 116 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--GGKTLVMAVYD 116 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHH--TTCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCC-CCCCcCcccEEEeecHHHc--CCCEEEEEEEE
Confidence 467899999999999753 57899999999963 35789999876 7999999999999864322 24789999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
++.+ .|++||++.|+|.++..+.. ...||+|..+
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~~-------~~~W~~L~~~ 151 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGHV-------TEEWRDLQSA 151 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSC-------EEEEEECBCC
T ss_pred CCCCCCCcEEEEEEEEchhccCCCC-------cceEEECCCC
Confidence 9976 69999999999999865422 3579998743
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=134.01 Aligned_cols=106 Identities=11% Similarity=0.156 Sum_probs=85.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCeEEEEEECCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..+.|.|+|++|++ .+..+.+||||++++.+. .+++|+|+++ +.||+|||+|.|.+....+ ....|.|+|||+
T Consensus 24 ~~~~L~V~v~~a~~-~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~-tlnP~wnE~f~f~v~~~~l--~~~~L~~~V~d~ 99 (138)
T 1wfm_A 24 QKAELFVTRLEAVT-SNHDGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEEL--PTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEEC-CCCSSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSS--TTCEEEEEEEEC
T ss_pred CCCEEEEEEEEEEc-CCCCCCcceEEEEEEEcCCCcccEecccCcC-CCCCcCCceEEEEecHHHc--CCCEEEEEEEEC
Confidence 46789999999995 355688999999999542 3578998875 7999999999999986544 357899999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
+.+ .|++||++.|+|.++..... ...||.|..+
T Consensus 100 d~~~~dd~lG~~~i~l~~l~~~~~-------~~~W~~L~~~ 133 (138)
T 1wfm_A 100 DRFSRHSVAGELRLGLDGTSVPLG-------AAQWGELKTS 133 (138)
T ss_dssp CSSCTTSCSEEEEEESSSSSSCTT-------CCEEEECCCC
T ss_pred CCCCCCcEEEEEEEEcccccCccc-------ccceeeCcCC
Confidence 965 68999999999999854321 3479999864
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-17 Score=137.24 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=86.7
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|+|+|++|++|+.. .+ +||||++++.+. .+++|+++++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 21 ~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~ 96 (142)
T 2dmg_A 21 SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK-TLNPVFDQSFDFSVSLPEV--QRRTLDVA 96 (142)
T ss_dssp TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCS-CSSCEEEEEEEECCCHHHH--HHCEEEEE
T ss_pred CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCC-CCCCCcCceEEEEecHHHh--CcCEEEEE
Confidence 3467899999999999753 57 999999999532 5789999875 8999999999999864322 13589999
Q ss_pred EEEcCcCC---CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcc
Q 035970 77 IYAAAWLK---DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQ 125 (377)
Q Consensus 77 VyD~d~~~---DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~ 125 (377)
|||++.+. |++||.+.|+|.++..... ...||+|...+++..
T Consensus 97 V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~-------~~~W~~L~~~~~~~~ 141 (142)
T 2dmg_A 97 VKNSGGFLSKDKGLLGKVLVALASEELAKG-------WTQWYDLTEDSGPSS 141 (142)
T ss_dssp EEECCCSSCCSCCCCEEEEEECCCSTTTTC-------BCCBCCCBCSCSCCC
T ss_pred EEECCCccccCCcEEEEEEEeccccccccc-------ccceeeccCCCCCCC
Confidence 99999653 5799999999999865422 236898887655443
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=135.96 Aligned_cols=109 Identities=14% Similarity=0.302 Sum_probs=88.1
Q ss_pred CCCeEEEEEEEEeecCCC---CCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLAL---VSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~---~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
+..+.|.|+|++|++|+. ..+.+||||++++.+. .+.+|+++++ +.||+|||+|.|.+....+ ....|.|
T Consensus 20 ~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~--~~~~L~~ 96 (148)
T 3fdw_A 20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD-TVNPLYDETLRYEIPESLL--AQRTLQF 96 (148)
T ss_dssp TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSS-CSSCEEEEEEEEECCSTTG--GGCEEEE
T ss_pred CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCC-CCCCcEeeEEEEEeChhHh--CceEEEE
Confidence 346789999999999974 3578999999999753 3789998875 7999999999999886533 2457999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
+|||++.+ .|++||++.|+|.++..... ...||+|..+.
T Consensus 97 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~-------~~~W~~L~~~~ 136 (148)
T 3fdw_A 97 SVWHHGRFGRNTFLGEAEIQMDSWKLDKK-------LDHCLPLHGKI 136 (148)
T ss_dssp EEEEECGGGCEEEEEEEEEEHHHHHHHCC-------SEEEEECBCC-
T ss_pred EEEECCCCcCCcEEEEEEEEcccccccCC-------ccceEECcCcc
Confidence 99999966 68999999999999865432 24799998653
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=143.74 Aligned_cols=126 Identities=17% Similarity=0.304 Sum_probs=102.2
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
+..+.|.|+|++|++|... .+.+||||++++.+. .+.+|+++++ +.||.|||+|.|.+....+ ....|.|+||
T Consensus 16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~--~~~~l~~~V~ 92 (284)
T 2r83_A 16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--AGKTLVMAVY 92 (284)
T ss_dssp TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGC--TTCEEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHh--CcCEEEEEEE
Confidence 3567999999999999753 578999999999753 5788998875 7999999999999875433 3578999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC---CCcceEEEEEEEEEecC
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS---GRPQGILNLGITLLDNT 138 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s---Gk~~G~L~LsV~f~p~s 138 (377)
|++.+ .|++||++.|+|.++..... ...||+|.... ....|+|.+.+.+.+..
T Consensus 93 d~d~~~~~~~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~ 149 (284)
T 2r83_A 93 DFDRFSKHDIIGEFKVPMNTVDFGHV-------TEEWRDLQSAEKEEQEKLGDICFSLRYVPTA 149 (284)
T ss_dssp ECCSSSCCCEEEEEEEEGGGCCCSSC-------EEEEEECBCCSSCCCCCCCEEEEEEEEETTT
T ss_pred ECCCCCCCceeEEEEEcchhcccCCc-------ceeEEEeeccccccccccccEEEEEEecCcC
Confidence 99976 68999999999999866422 35799998653 24689999999988654
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=133.39 Aligned_cols=108 Identities=19% Similarity=0.307 Sum_probs=86.6
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEecc-CCCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDD-RFLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~-~~L~~~~s~L~VeV 77 (377)
+..+.|+|+|++|++|+.. .+.+||||++++.+ ..+++|+++++ +.||+|||+|.|.+.+ ..+ ....|.|+|
T Consensus 23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~i~V 99 (141)
T 2d8k_A 23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKV--VQRILYLQV 99 (141)
T ss_dssp SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTT-CSSCCCCEEEEECSCCHHHH--TTSEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcC-CCCCccccEEEECccCHHHc--ccCEEEEEE
Confidence 4567899999999999754 57899999999953 36789999865 8999999999998532 111 247899999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
||++.+ .|++||++.|+|.++..... ...||+|...
T Consensus 100 ~d~d~~~~~~~iG~~~i~l~~l~~~~~-------~~~W~~L~~~ 136 (141)
T 2d8k_A 100 LDYDRFSRNDPIGEVSIPLNKVDLTQM-------QTFWKDLKPS 136 (141)
T ss_dssp EECCSSSSCEEEEEEEEETTTSCTTSC-------EEEEECCEEC
T ss_pred EECCCCCCCcEEEEEEEEhhhhcCCCC-------ccEEEECcCC
Confidence 999975 68999999999999876432 3579998854
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-16 Score=130.85 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=85.4
Q ss_pred CCeEEEEEEEEeecCCCC---CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV---SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~VeV 77 (377)
..+.|+|+|++|++|+.. .+.+||||++++.+ ..+++|+++++ +.||+|||+|.|. +....+ ....|.|+|
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~--~~~~l~i~V 96 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQI--QELALHFTI 96 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTG--GGCEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcC-CCCCcEeeEEEEcCcCHHHh--ccCEEEEEE
Confidence 457899999999999753 37899999999974 36889999875 8999999999996 765433 246899999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
||++.+ .|++||++.|+|.++..... ....|+.|..
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~------~~~~~~~l~~ 133 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEG------KMLMNREIIS 133 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTC------CEEEEEECBS
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCC------cchhhhhhhc
Confidence 999966 68999999999999876432 1345777764
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=140.12 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=86.0
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC---C--CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP---E--RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p---~--~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
+..+.|+|+|++|++|+. .++.+||||++++.+ . .+++|+|+++ +.||+|||+|.|.|....+ ....|.|
T Consensus 40 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~~~l--~~~~L~~ 116 (155)
T 2z0u_A 40 EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSYPAL--HQKTLRV 116 (155)
T ss_dssp TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCHHHH--HHCEEEE
T ss_pred CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCHHHh--CcCEEEE
Confidence 356789999999999964 468999999999975 2 3789999876 7999999999999875322 2468999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
+|||++.+ +|++||++.|+|.++.... .....||.|.
T Consensus 117 ~V~d~d~~~~~d~iG~~~i~l~~l~~~~------~~~~~W~~L~ 154 (155)
T 2z0u_A 117 DVCTTDRSHLEECLGGAQISLAEVCRSG------ERSTRWYNLL 154 (155)
T ss_dssp EEEEECTTSCEEEEEEEEEECTTSCTTC------CCEEEEEEEB
T ss_pred EEEECCCCCCCcEEEEEEEEHHHccCCC------CccccceEcc
Confidence 99999965 6899999999999985321 1245799885
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=136.99 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=84.7
Q ss_pred CCCeEEEEEEEEeecCCCC---------CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCc
Q 035970 3 PPPRVLEISIVSGHDLALV---------SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETS 71 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~---------~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s 71 (377)
+..+.|+|+|++|++|+.. .+.+||||+|++.+ ..+++|+|+++ +.||+|||+|.|.+....+ ...
T Consensus 23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~ 99 (147)
T 2enp_A 23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK-TQKPVFEERYTFEIPFLEA--QRR 99 (147)
T ss_dssp TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCS-CSSCCCCBCCEECCCHHHH--HHS
T ss_pred CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccC-CCCCeEeeeEEEEeChHHh--ccC
Confidence 4567899999999999752 24799999999974 35789999875 7999999999999875322 135
Q ss_pred eEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 72 AIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 72 ~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
.|.|+|||++.+ .|++||++.|+|.++..... ...||.|..
T Consensus 100 ~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~-------~~~w~~L~~ 141 (147)
T 2enp_A 100 TLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKG-------GHWWKALIP 141 (147)
T ss_dssp EEEEEEECCSTTCCSCCCEEEEEETTTSCTTTC-------CCEEECCBC
T ss_pred EEEEEEEECCCCcCCcEEEEEEEechhcCCCCC-------ccEEEEeec
Confidence 899999999965 58899999999999865432 236887764
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=133.64 Aligned_cols=107 Identities=19% Similarity=0.348 Sum_probs=85.2
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIE 76 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~Ve 76 (377)
+.+.|.|+|++|++|+.. .+.+||||++++.+ ..+++|+++++ +.||+|||+|.|. +....+ ....|.|+
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~i~ 103 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN-TRNPVWNETLQYHGITEEDM--QRKTLRIS 103 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCS-CSSCEEEEEEEEESCCHHHH--HHCEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCC-CCCCcCcCEEEEcccCHHHc--cCCEEEEE
Confidence 457899999999999754 57899999999975 26789999875 8999999999998 653211 12589999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|||++.+ .|++||++.|+|.++..... ...|+.|..+
T Consensus 104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~-------~~~~~~L~~p 141 (142)
T 2chd_A 104 VCDEDKFGHNEFIGETRFSLKKLKANQR-------KNFNICLERV 141 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEGGGCCTTCC-------EEEEEECBCC
T ss_pred EEECCCCCCCcEEEEEEEEHHHcCCCCc-------cEEEEecccC
Confidence 9999976 58999999999999876532 3567777543
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=134.81 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=86.6
Q ss_pred CCCeEEEEEEEEeecCCCC-CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV-SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~-~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
+..+.|.|+|++|++|+.. .+.+||||++++.+ ..+.+|+++++ +.||+|||+|.|.+....+ ...|.|+|
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~---~~~L~i~V 99 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPD-CRDPAFHEHFFFPVQEEDD---QKRLLVTV 99 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTT-CSSCEEEEEEEEECCGGGT---TSEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCC-CCCCccccEEEEecccHHh---CCEEEEEE
Confidence 3567899999999999754 47899999999953 25789999875 8999999999999954433 34699999
Q ss_pred EEcCcC-C-CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 78 YAAAWL-K-DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 78 yD~d~~-~-DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
||++.+ + |++||++.|+|.++.... .....||+|....
T Consensus 100 ~d~d~~~~~d~~lG~~~i~l~~l~~~~------~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 100 WNRASQSRQSGLIGCMSFGVKSLLTPD------KEISGWYYLLGEH 139 (153)
T ss_dssp EECCSSGGGCEEEEEEEEEHHHHTC--------CCEEEEEECBCTT
T ss_pred EeCCCCCCCCcEEEEEEEEHHHhcCCC------CccccEEECCChh
Confidence 999975 4 899999999999987421 1135799998654
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=135.58 Aligned_cols=107 Identities=15% Similarity=0.230 Sum_probs=84.6
Q ss_pred CeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC-------------CeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCC
Q 035970 5 PRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE-------------RKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTD 68 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~-------------~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~ 68 (377)
.+.|.|+|++|++|+.. .+.+||||++++.+. .+.+|+++++ +.||+|||+|.|. +....+
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~l-- 93 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQL-- 93 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHH--
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCC-CCCCCCCCEEEECCcCHHHc--
Confidence 36899999999999754 578999999999853 2467888775 7999999999997 653212
Q ss_pred CCceEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 69 ETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 69 ~~s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
....|.|+|||++.+ .|++||.+.|+|.++..... ...||+|...+
T Consensus 94 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~-------~~~W~~L~~~~ 140 (142)
T 1rh8_A 94 MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-------TPRWYPLKEQT 140 (142)
T ss_dssp TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT-------CCEEEECBCCC
T ss_pred cCCEEEEEEEECCCCCCCceEEEEEEeccccccCCC-------CCeEEECCccC
Confidence 246899999999976 58999999999999865422 24799998653
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-16 Score=129.62 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=78.2
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|+.. .+.+||||++++.+. .+.+|+++++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l--~~~~l~~~ 89 (138)
T 3n5a_A 13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR-NLNPIFNESFAFDIPTEKL--RETTIIIT 89 (138)
T ss_dssp TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSS-CSSCEEEEEEEEECCGGGG--GGEEEEEE
T ss_pred CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccC-CCCCcCcceEEEECChhhc--CceEEEEE
Confidence 3568899999999999753 578999999999753 4678988875 7999999999999876533 24689999
Q ss_pred EEEcCcC-CCceeEEEEEEccccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLF 99 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~ 99 (377)
|||++.+ .|++||++.|+|.++.
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 90 VMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEECCSSSCCEEEEEEEESSSSCH
T ss_pred EEECCCCCCCcEEEEEEEccccCC
Confidence 9999966 6899999999998754
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=134.66 Aligned_cols=104 Identities=14% Similarity=0.266 Sum_probs=85.3
Q ss_pred CeEEEEEEEEeecCCCC---CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALV---SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
.+.|+|+|++|++|... .+.+||||+|++.+. .+++|+|+++ +.||+|||+|.|.+.. ....|.|+|
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~-----~~~~L~~~V 102 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK-TLDPLYQQSLVFDESP-----QGKVLQVIV 102 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEECSSCC-----TTEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCC-CCCCCCCcEEEEEecC-----CCCEEEEEE
Confidence 46899999999999753 478999999999753 3778998875 7999999999999864 358899999
Q ss_pred E-EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 78 Y-AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 78 y-D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
| |++.+ .|++||++.|+|.++..... ...||+|...+
T Consensus 103 ~~d~d~~~~d~~iG~~~i~l~~l~~~~~-------~~~W~~L~~~~ 141 (171)
T 2q3x_A 103 WGDYGRMDHKCFMGVAQILLEELDLSSM-------VIGWYKLFPPS 141 (171)
T ss_dssp EEECSTTCSSEEEEEEEECGGGSCTTSC-------EEEEEECBCGG
T ss_pred EEcCCCCCCCCEEEEEEEEHHHcccCCC-------cceeEECCCcc
Confidence 9 99866 58999999999999865422 35799998653
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=131.25 Aligned_cols=119 Identities=14% Similarity=0.218 Sum_probs=101.2
Q ss_pred EEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc-CCC
Q 035970 7 VLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW-LKD 85 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~-~~D 85 (377)
.|.|+|.+|.+|+ ++.||||.+.+- ..+++|+++++++.||+|||.|.|++..+. +..+.|.|.|||++. ++|
T Consensus 22 sL~V~l~~a~~Lp---g~~Dp~akv~FR-g~k~kTkvi~~~~~npvfnE~F~wpl~~~l--d~~e~L~v~V~d~~~v~~n 95 (144)
T 3l9b_A 22 ALIVHLKTVSELR---GRADRIAKVTFR-GQSFYSRVLENCEDVADFDETFRWPVASSI--DRNEVLEIQIFNYSKVFSN 95 (144)
T ss_dssp EEEEEEEEEESCC---SCEEEEEEEEET-TEEEECCCEEEECSCEEEEEEEEEEESSCC--CTTCEEEEEEEEECTTSCC
T ss_pred EEEEEEEEecCCC---CCCCCeEEEEEe-ccceeeEEeccCCCCceEcceEEecCCCCC--CCCCEEEEEEEECccccCC
Confidence 6899999999998 588999999996 478999999755799999999999998753 477899999999985 589
Q ss_pred ceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc-ceEEEEEEEEEecC
Q 035970 86 ALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP-QGILNLGITLLDNT 138 (377)
Q Consensus 86 dlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~-~G~L~LsV~f~p~s 138 (377)
++||++.|+|.++...+. ..++.+|.+.+.++ .++|.|.|+|.+..
T Consensus 96 rlIG~~~i~Lq~lv~~~~-------l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 96 KLIGTFRMVLQKVVEENR-------VEVSDTLIDDNNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEEEEESHHHHHHSE-------EEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred CEEEEEEEEhHHhccCCe-------EEEeecccCCCCCccccEEEEEEEecCCC
Confidence 999999999999987643 23577888887765 47899999999875
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=131.16 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|+|+|++|++|+.. .+.+||||++++.+. .+.+|+++++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 22 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~l~i~ 98 (159)
T 1tjx_A 22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQI--QKVQVVVT 98 (159)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGG--GGCEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecC-CCCCcccceEEEEcCHHHh--CCcEEEEE
Confidence 4567999999999999754 578999999999643 4678998775 7999999999999875433 24579999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCccc-----CCCCCceeEEEEeeC
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTH-----NSSSSTRYVALQVRR 119 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~-----~~~~~~~~v~y~Lrr 119 (377)
|||++.+ .|++||.+.|+|..+..+..| .........||+|..
T Consensus 99 V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 99 VLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp EEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred EEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 9999976 599999999999864211110 001123457998875
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=132.17 Aligned_cols=94 Identities=20% Similarity=0.336 Sum_probs=79.0
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|+.. .+.+||||++++.+. .+++|+++++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 34 ~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~ 110 (166)
T 2cm5_A 34 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDL--AKKSLDIS 110 (166)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGG--GGCEEEEE
T ss_pred CCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC-CCCCcccceEEEEcchHhc--CCCEEEEE
Confidence 3567899999999999753 578999999999752 6789999875 8999999999999975433 24689999
Q ss_pred EEEcCcC-CCceeEEEEEEccccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLF 99 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~ 99 (377)
|||++.+ .|++||++.|+|.++.
T Consensus 111 V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 111 VWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp EEECCSSSCCEEEEEEEEETTCCH
T ss_pred EEECCCCCCCcEEEeEEEecccCC
Confidence 9999976 6899999999999853
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=155.29 Aligned_cols=118 Identities=20% Similarity=0.252 Sum_probs=99.1
Q ss_pred CCeEEEEEEEEeecCCCC----CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 4 PPRVLEISIVSGHDLALV----SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~----~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
....|.|+|++|++|+.. .+.+||||+|++.+. .+.+|+++++++.||+|||+|.|.|..+.+ ..|.|
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el----~~L~~ 570 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL----ALVRF 570 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG----CEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC----CEEEE
Confidence 457899999999999754 468999999999542 578999988766999999999999986543 68999
Q ss_pred EEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEEE
Q 035970 76 EIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITLL 135 (377)
Q Consensus 76 eVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f~ 135 (377)
+|||++.+ +|++||++.|||.+|..+. .+++|++..|.+ .+.|.|.|.|.
T Consensus 571 ~V~D~D~~~~dd~iG~~~ipl~~L~~G~----------r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 571 MVEDYDSSSKNDFIGQSTIPWNSLKQGY----------RHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EEEECCSSSCCEEEEEEEEEGGGBCCEE----------EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEEcCCCCCCceeEEEEEEHHHcCCCc----------EEEeCCCCCcCCCCceEEEEEEEEE
Confidence 99999965 7999999999999997653 589999988874 57888888875
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=128.31 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|+.. .+.+||||+|++.++ .+++|+++++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 27 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~l~v~ 103 (153)
T 1w15_A 27 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESL--EEISVEFL 103 (153)
T ss_dssp TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSS--TTEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHh--CceEEEEE
Confidence 3567899999999999753 578999999999532 2668998875 8999999999999987544 34789999
Q ss_pred EEEcCcC-CCceeEEEEEEccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISH 97 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~ 97 (377)
|||++.+ .|++||.+.|+|.+
T Consensus 104 V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 104 VLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EEECCTTSCCEEEEEEEESTTC
T ss_pred EEeCCCCCCCcEEEEEEECCCC
Confidence 9999966 68999999999988
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=137.67 Aligned_cols=127 Identities=22% Similarity=0.290 Sum_probs=97.4
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
...+.|.|+|++|++|+. ..+.+||||++++.+ ..+++|+|+++ +.||+|||+|.|.+....+ ....|.|+||
T Consensus 17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~~~V~ 93 (296)
T 1dqv_A 17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAEL--AQRKLHFSVY 93 (296)
T ss_dssp SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGG--SSCCCEEEEE
T ss_pred CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHh--cCCEEEEEEE
Confidence 356889999999999974 367899999999953 46789999875 7999999999999875433 2468999999
Q ss_pred EcCcC-CCceeEEEEEE-cccccCCcccCCCCCceeEEEEeeCCC--CCcceEEEEEEEEEecC
Q 035970 79 AAAWL-KDALIGSVRVL-ISHLFGTLTHNSSSSTRYVALQVRRPS--GRPQGILNLGITLLDNT 138 (377)
Q Consensus 79 D~d~~-~DdlIG~a~Ip-Ls~L~~~~~~~~~~~~~~v~y~Lrr~s--Gk~~G~L~LsV~f~p~s 138 (377)
|++.+ +|++||++.|+ |.++..... ....|+.|.... ....|+|.+.+.+.+..
T Consensus 94 d~d~~~~~~~iG~~~i~~l~~~~~~~~------~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~ 151 (296)
T 1dqv_A 94 DFDRFSRHDLIGQVVLDNLLELAEQPP------DRPLWRDILEGGSEKADLGELNFSLCYLPTA 151 (296)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCS------SCCCCEECBCCSSCCSCCCEEEEEEEEETTT
T ss_pred EcCCCCCCceEEEEEeccccccccCCc------cceeeeccccccccccccceEEEEEEecccc
Confidence 99965 69999999996 444433211 123588887543 34689999999987754
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-14 Score=143.41 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=95.6
Q ss_pred CCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcC
Q 035970 4 PPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAA 81 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d 81 (377)
..+.|.|+|++|++|+. ..+.+||||++++++ .+.+|+|+++ +.||.|||+|.|.+... ....|.|+|||++
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~-~~~~T~~~~~-t~nP~w~e~f~f~~~~~----~~~~l~~~v~d~d 458 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGS-QSYTTRTIQD-TLNPKWNFNCQFFIKDL----YQDVLCLTLFDRD 458 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCSS-CSSCEEEEEEEEEESCT----TTCEEEEEEEECC
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECC-eeccCCccCC-CCCCccCceEEEEecCC----CCCEEEEEEEeCC
Confidence 45789999999999964 468899999999974 6889999876 79999999999999754 3478999999999
Q ss_pred cC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 82 WL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 82 ~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
.+ .|++||++.++|.++..+.... .....|+.+. ++..|+|.|.+.+.
T Consensus 459 ~~~~~d~lG~~~~~l~~l~~~~~~~---~~~~~~~~l~---~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 459 QFSPDDFLGRTEIPVAKIRTEQESK---GPMTRRLLLH---EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSSSCCEEEEEEEEHHHHHHHHHHH---CSCCEEEECB---SSSSCEEEEEEEEE
T ss_pred CCCCCCceEEEEEEHHHhccccCCC---CceeeeecCC---CCCCceEEEEEEEE
Confidence 76 5899999999999987643211 1123677765 45789998888763
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=145.06 Aligned_cols=116 Identities=23% Similarity=0.274 Sum_probs=96.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCC------CeEEeEeeCCCCCCCeeeeE-EEEE-eccCCCCCCCceEEEE
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPE------RKLTTRVDQNGLNNPSWNEK-FVFR-VDDRFLTDETSAIMIE 76 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~------~k~rTrV~k~gg~NP~WNEt-F~F~-V~~~~L~~~~s~L~Ve 76 (377)
...|.|+|++|++|++ ..+||||+|.+.+. .+++|+|+++++.||+|||+ |.|. |..+.+ ..|.|+
T Consensus 649 ~~~L~V~Visaq~L~~--~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel----a~Lrf~ 722 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD--KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL----AVVRII 722 (816)
T ss_dssp CEEEEEEEEEEECCCS--SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG----CEEEEE
T ss_pred ceEEEEEEEEcccCCC--CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc----cEEEEE
Confidence 4689999999999975 36899999999642 46799998877899999998 9998 765543 689999
Q ss_pred EEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEEEecCC
Q 035970 77 IYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITLLDNTM 139 (377)
Q Consensus 77 VyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f~p~s~ 139 (377)
|||++ |+|||++.|||..|.+++ .+++|++..|.+ .+.|.+.|.+.+...
T Consensus 723 V~D~d---ddfiG~~~ipL~~L~~Gy----------R~vpL~~~~g~~~~~atLfv~i~~~~~~~ 774 (816)
T 3qr0_A 723 VSEEN---GKFIGHRVMPLDGIKPGY----------RHVPLRNESNRPLGLASVFAHIVAKDYVS 774 (816)
T ss_dssp EEETT---SCEEEEEEEESTTCCCEE----------EEEEEECTTSCEEEEEEEEEEEEEEECCC
T ss_pred EEecC---CCeeeEEEEEHHHcCCcc----------eEEEEeCCCCCCCCceEEEEEEEEEecCc
Confidence 99985 899999999999998764 478999988865 368888888887653
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=126.90 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=85.6
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|.. ..+.+||||++++.++ .+.+|+|+++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 147 p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~l~i~ 223 (284)
T 2r83_A 147 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQI--QKVQVVVT 223 (284)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCTTTG--GGEEEEEE
T ss_pred CcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEceeEEEeCCHHHh--CceEEEEE
Confidence 346789999999999974 3578999999998532 3578888765 7999999999999976543 24579999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCccc-----CCCCCceeEEEEeeCC
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTH-----NSSSSTRYVALQVRRP 120 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~-----~~~~~~~~v~y~Lrr~ 120 (377)
|||++.+ .|++||++.|+|..+..+..| .........||+|...
T Consensus 224 V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 224 VLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred EEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 9999975 689999999999864322111 0011234579988753
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=147.35 Aligned_cols=115 Identities=22% Similarity=0.295 Sum_probs=96.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECC---C--CeEEeEeeCCCCCCCeeee-EEEEE-eccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDP---E--RKLTTRVDQNGLNNPSWNE-KFVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p---~--~k~rTrV~k~gg~NP~WNE-tF~F~-V~~~~L~~~~s~L~VeV 77 (377)
...|.|+||+|++|+. ..+||||+|.+.+ + .+++|+|+++++.||+||| +|.|. |..+.+ ..|.|+|
T Consensus 724 ~~~L~V~Visaq~L~~--~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel----a~Lrf~V 797 (885)
T 3ohm_B 724 ANALRVKVISGQFLSD--RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL----ASLRIAA 797 (885)
T ss_dssp CEEEEEEEEEEESCCS--SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG----CEEEEEE
T ss_pred ceEEEEEEEEeccCcc--cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc----CEEEEEE
Confidence 4589999999999975 3689999999964 2 3578999887789999999 69998 765433 5899999
Q ss_pred EEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEEEecC
Q 035970 78 YAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITLLDNT 138 (377)
Q Consensus 78 yD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f~p~s 138 (377)
||++ |+|||++.|||..|.+++ .+++|++..|.+ .+.|.|.|.+.+..
T Consensus 798 ~D~d---ddfiG~~~lpL~~L~~Gy----------R~vpL~~~~g~~l~~atLfv~i~~~~~~ 847 (885)
T 3ohm_B 798 FEEG---GKFVGHRILPVSAIRSGY----------HYVCLRNEANQPLCLPALLIYTEASDYI 847 (885)
T ss_dssp EETT---TEEEEEEEEETTTCCCEE----------EEEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred EcCC---ccEEeeEEEEHHHcCCCc----------eEEEecCCCCCccCceEEEEEEEEEecC
Confidence 9987 899999999999998764 468899888864 78999999998765
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.43 E-value=8.3e-13 Score=143.22 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=92.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECC---C--CeEEeE-eeCCCCCCCeeee-EEEE-EeccCCCCCCCceEEEE
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDP---E--RKLTTR-VDQNGLNNPSWNE-KFVF-RVDDRFLTDETSAIMIE 76 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p---~--~k~rTr-V~k~gg~NP~WNE-tF~F-~V~~~~L~~~~s~L~Ve 76 (377)
.+.|.|+|++|++|++ +.+||||+|.+.+ + .+++|+ ++++++.||+||| +|.| .|..+.+ ..|.|+
T Consensus 677 ~~~L~V~Visa~~L~~--~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el----~~Lr~~ 750 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE--RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL----ASLRVA 750 (799)
T ss_dssp CEEEEEEEEEEESCCS--SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG----CEEEEE
T ss_pred eeeEEEEEEeccccCc--cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc----cEEEEE
Confidence 5689999999999975 4789999999953 2 368999 8877789999999 7999 8876544 589999
Q ss_pred EEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCC--cceEEEEEEEEE
Q 035970 77 IYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR--PQGILNLGITLL 135 (377)
Q Consensus 77 VyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk--~~G~L~LsV~f~ 135 (377)
|||++ |++||++.|||..|.++. .+++|++..|. ..+.|.|.|.+.
T Consensus 751 V~D~d---~d~iG~~~ipl~~L~~G~----------r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 751 VMEEG---NKFLGHRIIPINALNSGY----------HHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EEETT---TEEEEEEEEEGGGBCCEE----------EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EEEeC---CCccceEeeehhhcCCCc----------EEEeccCCCCCCCCceEEEEEEEEE
Confidence 99986 899999999999997653 47899988776 456777777764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-13 Score=137.80 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=88.7
Q ss_pred CeEEEEEEEEeecCCC-CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC
Q 035970 5 PRVLEISIVSGHDLAL-VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL 83 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~-~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~ 83 (377)
.+.|.|+|++|++|+. ..+.+||||+|++++ ++.+|+|+++ +.||+|||+|.|.+.... ....|.|+|||+|.+
T Consensus 393 ~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~-~~~kTkvik~-tlNP~Wne~f~f~~~~~~---~~~~L~~~V~D~D~~ 467 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWGDYTTATDAYLKVFFGG-QEFRTGVVWN-NNNPRWTDKMDFENVLLS---TGGPLRVQVWDADYG 467 (540)
T ss_dssp EEEEEEEEEEEESCCCSSCSCCCEEEEEEETT-EEEECCCBCS-CSSCBCCCCEEEEEEETT---TCCCEEEEEEECCSS
T ss_pred ccEEEEEEEEccCCCcccCCCcCeEEEEEECC-EeeeeeeecC-CCCCCCCeEEEEEEecCC---CCCEEEEEEEECCCC
Confidence 5789999999999974 457899999999985 5799999876 799999999999864311 357899999999976
Q ss_pred -CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEec
Q 035970 84 -KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDN 137 (377)
Q Consensus 84 -~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~ 137 (377)
.|+|||++.++|.. + . ...|++| .+|.|++++.+.-.
T Consensus 468 ~~dD~LG~~~~~L~~---g-~-------~~~~~~l------~~G~l~~~~~~~c~ 505 (540)
T 3nsj_A 468 WDDDLLGSCDRSPHS---G-F-------HEVTCEL------NHGRVKFSYHAKCL 505 (540)
T ss_dssp SCCEEEEEEEECCCS---E-E-------EEEEEEC------SSSEEEEEEEEEEC
T ss_pred CCCCEEEEEEEEeeC---C-c-------EEEEEEc------CCeEEEEEEEEEEC
Confidence 67999999999872 1 1 1356654 36899998887654
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=143.76 Aligned_cols=104 Identities=17% Similarity=0.295 Sum_probs=87.5
Q ss_pred CCCeEEEEEEEEeecCCC---C--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLAL---V--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~---~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~V 75 (377)
.+.+.|+|+|++|++|+. . .+.+||||+|++.+ ..+++|+|+++ +.||+|||+|.|.+... ....|.|
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~----~~~~L~~ 89 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN----QENVLEI 89 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT----SCCBCEE
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCC----CCCEEEE
Confidence 357899999999999986 2 47899999999985 46789999875 79999999999999864 3468999
Q ss_pred EEEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 76 EIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 76 eVyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
+|||++.++|++||++.|+|.++..+.. ...|++|.
T Consensus 90 ~V~D~D~~~ddfIG~v~I~L~~L~~g~~-------~~~w~~L~ 125 (749)
T 1cjy_A 90 TLMDANYVMDETLGTATFTVSSMKVGEK-------KEVPFIFN 125 (749)
T ss_dssp EEEECCSSSCEEEEEECCBSTTSCTTCC-------CCEEEEET
T ss_pred EEEECCCCCCceeEEEEEEHHHcCCCCc-------eEEEEecC
Confidence 9999997669999999999999866543 23688875
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-14 Score=145.16 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=19.8
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCC---CCCeeeeEEEEEeccCCCCCCCceEEEEEEEc-
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGL---NNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA- 80 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg---~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~- 80 (377)
.+.|+|+|++|++|+... ||||++++++....+|++.++ + .||+|||+|.|.+.+. ...|.|+|||+
T Consensus 10 ~~~L~V~VieAk~L~~~d---dpYv~v~l~~~~~~kT~v~~k-t~~glnP~WnE~F~f~~~~~-----~~~L~v~V~d~~ 80 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK---RYYCELCLDDMLYARTTSKPR-SASGDTVFWGEHFEFNNLPA-----VRALRLHLYRDS 80 (483)
T ss_dssp EECC-------------------------------------------------CCEECC---------------------
T ss_pred ccEEEEEEEEcCCcCCCC---CCeEEEEECCeEEeeeeEEeC-CCCCCCCccccEEEEecCCC-----ccEEEEEEEecC
Confidence 357999999999997543 999999998655678998765 5 8999999999997542 37899999995
Q ss_pred C----cCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC------------------------CcceEEEEEE
Q 035970 81 A----WLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG------------------------RPQGILNLGI 132 (377)
Q Consensus 81 d----~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG------------------------k~~G~L~LsV 132 (377)
+ ..+|++||.+.|++.++..+.. ...||+|..+.+ ...|.|+|.+
T Consensus 81 d~~~~~~~d~~lG~v~i~l~~l~~~~~-------~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v 153 (483)
T 3bxj_A 81 DKKRKKDKAGYVGLVTVPVATLAGRHF-------TEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKA 153 (483)
T ss_dssp --------------------------C-------CEECC--------------------------------------CEE
T ss_pred CccccCCCCceEEEEEEEHHHhcCCCC-------CCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEE
Confidence 4 3579999999999999876432 247888864321 3579999999
Q ss_pred EEEecC
Q 035970 133 TLLDNT 138 (377)
Q Consensus 133 ~f~p~s 138 (377)
+|.+..
T Consensus 154 ~~~~~~ 159 (483)
T 3bxj_A 154 RYQTMS 159 (483)
T ss_dssp EEEECC
T ss_pred Eeeeee
Confidence 998875
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-13 Score=125.55 Aligned_cols=94 Identities=23% Similarity=0.339 Sum_probs=77.6
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|+|+|++|++|+.. .+.+||||++++.+ ..+++|++.++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 149 ~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~ 225 (296)
T 1dqv_A 149 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESV--ENVGLSIA 225 (296)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGG--GSCCCCCE
T ss_pred cccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeECceEEEEcCHHHc--cCcEEEEE
Confidence 3467899999999999753 57889999999963 25788998875 7999999999999876533 24579999
Q ss_pred EEEcCcC-CCceeEEEEEEccccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLF 99 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~ 99 (377)
|||++.+ .|++||.+.|++..+.
T Consensus 226 V~d~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 226 VVDYDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp EEECCSSSCCEEEEECCCSSCTTC
T ss_pred EEeCCCCCCCceEEEEEECCccCC
Confidence 9999976 6899999999998764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=123.17 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=84.7
Q ss_pred CeEEEEEEEEeecCCC--CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
.+.|.|+|++|++|.. .++.+||||++++.+ ..+.+|+++++ +.||.|||+|.|.+.... ....|.|+||
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~-tlnP~wne~f~f~~~~~~---~~~~L~v~v~ 246 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKS-SLNPEWNETFRFQLKESD---KDRRLSVEIW 246 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSS-CSSCEEEEEEEEECCSTT---TTCEEEEEEE
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCcccccccccccccc-ccCCCccceeeeecccCC---ccceeeeEEe
Confidence 4679999999999964 468999999999943 25789999876 799999999999987643 3457999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|++.+ .|++||.+.++|.++..... ..|+.|..+
T Consensus 247 d~d~~~~dd~iG~~~i~l~~l~~~~~--------~~w~~Lls~ 281 (674)
T 3pfq_A 247 DWDLTSRNDFMGSLSFGISELQKAGV--------DGWFKLLSQ 281 (674)
T ss_dssp ECCSSSCCEECCBCCCBTTHHHHCCE--------EEEEECBCT
T ss_pred ecccccccccccccccchhhhccCCc--------ccceeeccc
Confidence 99965 69999999999999876432 468877753
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-07 Score=79.92 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=84.5
Q ss_pred CeEEEEEEEEeec--CCCCCCCCCeEEEEEECCCC---eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 5 PRVLEISIVSGHD--LALVSKSMKTYSVAWVDPER---KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 5 ~g~LeVtVISAkd--L~~~~g~~DPYVvV~L~p~~---k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
...|+|.+.++.. |.......||||.|.++-.. ..+|-+.+..+..|+|||.|.-.|.+ ...|.|.|++
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~------Gr~l~i~Vfh 78 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE------GRVIQIVLMR 78 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT------TCEEEEEEEE
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC------CEEEEEEEEc
Confidence 4679999988764 33333468999999997321 12443445558999999999999985 5899999997
Q ss_pred cCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 80 AAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 80 ~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
... +||..++|++.+|...-.. .......|+.|. |+|.|++.+.+.
T Consensus 79 ~a~---~fvAn~tV~~edL~~~c~~--~~g~~e~WvdLe-----P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 79 AAE---EPVSEVTVGVSVLAERCKK--NNGKAEFWLDLQ-----PQAKVLMSVQYF 124 (126)
T ss_dssp ETT---EEEEEEEEEHHHHHHHHHT--TTTEEEEEEECB-----SSCEEEEEEEEE
T ss_pred CCC---CeeeEEEEEHHHHHhhhcc--CCCceEEEEecc-----cCcEEEEEEEEe
Confidence 655 8999999999999854210 012346898775 799999998875
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-07 Score=80.52 Aligned_cols=115 Identities=14% Similarity=0.208 Sum_probs=83.1
Q ss_pred CeEEEEEEEEeecCCC---CCCCCCeEEEEEECCCC---eEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLAL---VSKSMKTYSVAWVDPER---KLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~---~~g~~DPYVvV~L~p~~---k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
...|+|.+.++....- .....||||.|.++-.. ..+|=+.+..+..|+|||.|.-.|.+ ...|.|.|+
T Consensus 9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~------Gr~l~i~Vf 82 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK------GRVMQIIVK 82 (138)
T ss_dssp CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS------SCEEEEEEE
T ss_pred CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC------CeEEEEEEE
Confidence 4679999988875432 23468999999987321 13341222237899999999998885 589999999
Q ss_pred EcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEE
Q 035970 79 AAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLL 135 (377)
Q Consensus 79 D~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~ 135 (377)
+... +||..++|++.+|...-.. .......|+.|. |+|.|++.+.|.
T Consensus 83 h~a~---~fVAn~tV~~edL~~~ck~--~~g~~e~WvdLe-----P~Gkl~v~i~~~ 129 (138)
T 2enj_A 83 GKNV---DLISETTVELYSLAERCRK--NNGKTEIWLELK-----PQGRMLMNARYF 129 (138)
T ss_dssp CSSC---SCCEEEEEESHHHHHHHHH--TTTCEEEEEECB-----SSCEEEEEEEEC
T ss_pred cCCC---CeeeEEEEEHHHHHhhhcc--CCCceEEEEecc-----cCcEEEEEEEEE
Confidence 6554 8999999999999854110 012246899875 799999999985
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.22 Score=44.09 Aligned_cols=128 Identities=15% Similarity=0.058 Sum_probs=87.4
Q ss_pred CCCeEEEEEEEEeecCCCC---CCCCCeEEEEEEC--CCCeEEeEeeCCCCCCCeeeeEEEEEeccCC--CC-CCCceEE
Q 035970 3 PPPRVLEISIVSGHDLALV---SKSMKTYSVAWVD--PERKLTTRVDQNGLNNPSWNEKFVFRVDDRF--LT-DETSAIM 74 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~---~g~~DPYVvV~L~--p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~--L~-~~~s~L~ 74 (377)
+..+.++|.|.+|.--+.. .+..+|+.-+..+ .-..+.|.+.. +.+|.+|.+-+|.|.... ++ .....|.
T Consensus 15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~ 92 (156)
T 2yrb_A 15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT 92 (156)
T ss_dssp SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence 3467899999988621111 1345665555543 33567888876 589999999888875432 10 1234788
Q ss_pred EEEEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC--CcceEEEEEEEEEecC
Q 035970 75 IEIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG--RPQGILNLGITLLDNT 138 (377)
Q Consensus 75 VeVyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG--k~~G~L~LsV~f~p~s 138 (377)
|+++...-..-+.||.+.|+|..++.... . .+-..+|....| ..-|.|.+.|++..+-
T Consensus 93 lELhqa~g~~~~tla~~~I~l~~lLe~~~-----~-i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi 152 (156)
T 2yrb_A 93 LEVHQAYSTEYETIAACQLKFHEILEKSG-----R-IFCTASLIGTKGDIPNFGTVEYWFRLRVSG 152 (156)
T ss_dssp EEEEEECSSCEEEEEEEEECCSHHHHCCS-----C-EEEEEEECBSSSCCTTSEEEEEEEEEEECC
T ss_pred EEEEEeeCCCceEEEEEEEEhHHhhCcCC-----c-eEEEEEEEcCCCCcceEEEEEEEEEEeccc
Confidence 99987643344699999999999986532 1 234557777777 6799999999997663
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=87.57 E-value=2.9 Score=46.33 Aligned_cols=90 Identities=16% Similarity=0.276 Sum_probs=58.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCeEEEEEE--CCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 6 RVLEISIVSGHDLALVSKSMKTYSVAWV--DPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 6 g~LeVtVISAkdL~~~~g~~DPYVvV~L--~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..+.|+|+++.++... ...+-||.+.| +.. ....|.... ...+|.|||.+.|++.-..|- -.+.|.|.||+.
T Consensus 217 ~~f~i~i~~~~~~~~~-~~~~~~V~~~l~~g~~~l~~~~~T~~~~-~~~~~~Wne~l~f~i~i~dLP-r~a~L~~ti~~~ 293 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD-ERMKLVVQAGLFHGNEMLCKTVSSSEVN-VCSEPVWKQRLEFDISVCDLP-RMARLCFALYAV 293 (940)
T ss_dssp SEEEEEEEEEECCCC----CEEEEEEEEEETTEESSCCEECCCEE-SCSSCEEEEEEEEEEEGGGCC-TTCEEEEEEEEE
T ss_pred CceEEEEEEecccCCC-CCceEEEEEEEEECCEEccCceeccccc-CCCCcccceEEEcccccccCC-cccEEEEEEEEe
Confidence 5689999999998532 45678888766 321 123343222 246899999999987654431 257899999995
Q ss_pred CcC-------------CCceeEEEEEEcccc
Q 035970 81 AWL-------------KDALIGSVRVLISHL 98 (377)
Q Consensus 81 d~~-------------~DdlIG~a~IpLs~L 98 (377)
... .+..||.+.++|=+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 294 VEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp C----------------CEEEEEEEEESBCT
T ss_pred cCCccCccccccccccccceEEEEeeeEECC
Confidence 321 145899998887664
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.12 E-value=1.7 Score=40.34 Aligned_cols=58 Identities=9% Similarity=0.131 Sum_probs=41.0
Q ss_pred CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcC-----CCceeEEEEEEccc
Q 035970 37 RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWL-----KDALIGSVRVLISH 97 (377)
Q Consensus 37 ~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~-----~DdlIG~a~IpLs~ 97 (377)
..++|-|... +.+|.|+|++.+.++.... ....|.|++++...- .+..+|.+.+||-.
T Consensus 77 se~~S~V~YH-nk~P~w~EtIKi~LP~~~~--~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYYQ-VKQPRWFETVKVAIPIEDV--NRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCTT-CSSCCCCEEEEEEECTTSS--TTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEEc-CCCCCceEeEEEeeChhhc--CCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 3566777655 6899999999999987643 568899999875421 23467777776643
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=84.86 E-value=3.6 Score=46.29 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=60.3
Q ss_pred eEEEEEEEEeecCCCC-CCCCCeEEEEEE--CCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 6 RVLEISIVSGHDLALV-SKSMKTYSVAWV--DPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 6 g~LeVtVISAkdL~~~-~g~~DPYVvV~L--~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..+.|+|+++.++.-. ....+.||.+.| +.. ....|+.. ...+|.|||.+.|++.-..|- ..+.|.|.||+
T Consensus 355 ~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~--~~~~~~Wne~l~f~i~i~dLP-r~arL~~tl~~ 431 (1091)
T 3hhm_A 355 SALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLNYDIYIPDLP-RAARLCLSICS 431 (1091)
T ss_dssp SEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCC--CTTSCEEEEEEEEEEEGGGCC-TTCEEEEEECC
T ss_pred CCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceecccc--CCCCCCCCeeEEecCccccCC-hhcEEEEEEEE
Confidence 4689999999888532 235678999877 322 22334422 246888999999987644331 25789999998
Q ss_pred cCcC-----CCceeEEEEEEccccc
Q 035970 80 AAWL-----KDALIGSVRVLISHLF 99 (377)
Q Consensus 80 ~d~~-----~DdlIG~a~IpLs~L~ 99 (377)
.... ....||.+.++|=+..
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTT
T ss_pred ecCccCcccccceeEEeeeeeEccC
Confidence 6532 2358999999887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 377 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-06 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 3e-06 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 4e-05 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 6e-05 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 8e-05 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-04 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 0.001 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 47.8 bits (113), Expect = 2e-07
Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 16/141 (11%)
Query: 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRV 61
P LE+ +VS L +M Y + + + + G P WNE F+F V
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTT-PEWNETFIFTV 66
Query: 62 DDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120
+ T+ + +I+ +D +G + + +F S A V +
Sbjct: 67 S-----EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVF------VEGSIPPTAYNVVK- 114
Query: 121 SGRPQGILNLGITLLDNTMRS 141
+G + + ++ + S
Sbjct: 115 DEEYKGEIWVALSFKPSGPSS 135
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.8 bits (105), Expect = 2e-06
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 5 PRVLEISIVSGHDLALVSKS--------MKTYSVAWVDPERKLTTRVDQNGLNNPSWNEK 56
P L + I+SG L V+K+ + T V N NP W+ +
Sbjct: 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 62
Query: 57 FVFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRV 93
F F V L + + + K+ IG +
Sbjct: 63 FEFEVTVPDL----ALVRFMVEDYDSSSKNDFIGQSTI 96
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 3e-06
Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 2 VPPPRVLEISIVSGHDLALVSKSMKT--YSVAWVDPERKLTTRVDQNGLNNPSWNEKFVF 59
V +L++ ++ DL S K+ + + + +R T V +N NP WN+ F F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKN--LNPEWNKVFTF 59
Query: 60 RVDDRFLTDETSAIMIEIY-AAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118
+ D + + ++ +G V + + + L+ +
Sbjct: 60 PIKDIH-----DVLEVTVFDEDGDKPPDFLGKVAIPLLSI-------RDGQPNCYVLKNK 107
Query: 119 RPSGRPQGILNLGITLLDN 137
+G++ L + L+ N
Sbjct: 108 DLEQAFKGVIYLEMDLIYN 126
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 4e-05
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEK 56
L + ++ L VS Y + K T V + N +NE
Sbjct: 12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCT-PNAVFNEL 70
Query: 57 FVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTH 104
FVF + L + + ++ ++ +IG + + + H
Sbjct: 71 FVFDIPCESLEEISVEFLVLDS-ERGSRNEVIGRLVLGATAEGSGGGH 117
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (93), Expect = 6e-05
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 3 PPPRVLEISIVSGHDLALVSKSMK--TYSVAWVDPERK----LTTRVDQNGLNNPSWNEK 56
L ++I+ DL Y + P+R T+ + L P WN+
Sbjct: 11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLE-PKWNQT 69
Query: 57 FVFRVDDRFLTDETSAIMIEIYAAAWL---KDALIGSVRVLISHLF 99
F++ R + I ++ A + + +G + + +
Sbjct: 70 FIYSPVHRR-EFRERMLEITLWDQARVREEESEFLGEILIELETAL 114
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 8e-05
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 7 VLEISIVSGHDLALVSKS------MKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFR 60
VL + + +L + + +K + E K T+ + NP WNE F F+
Sbjct: 16 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS-LNPEWNETFRFQ 74
Query: 61 VDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHLFG 100
+ + D+ + +EI+ ++ +GS+ IS L
Sbjct: 75 LKES---DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.4 bits (91), Expect = 1e-04
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWVD------PERKLTTRVDQNGLNNPSWNEK 56
L + I+ LA + + + + + K T++ + NP +NE+
Sbjct: 12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT-LNPEFNEE 70
Query: 57 FVFRVDDRFLTDETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTH 104
F + + L ++ + I ++ + IG ++ IS L H
Sbjct: 71 FFYDIKHSDLAKKS--LDISVWDYDIGKSNDYIGGCQLGISAKGERLKH 117
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.1 bits (85), Expect = 0.001
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%)
Query: 2 VPPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKL----TTRVDQNGLNNPSWNE 55
VP L + I+ +L + Y + K T + +N LN P +NE
Sbjct: 21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLN-PYYNE 79
Query: 56 KFVFRVDDRFLTDETSAIMIEIYAAAWLKDALIGSVRVLISHLFGTLTH 104
F F V + + + Y K+ IG V V + L H
Sbjct: 80 SFSFEVPFEQIQKVQVVVTVLDYDKIG-KNDAIGKVFVGYNSTGAELRH 127
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.85 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.83 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.8 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.79 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.78 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.75 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.68 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.65 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.65 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.62 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.61 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.6 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.6 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.59 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.58 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.56 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.55 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.55 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.44 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 93.05 | |
| d2yrba1 | 142 | Fantom {Human (Homo sapiens) [TaxId: 9606]} | 87.87 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.85 E-value=5e-21 Score=161.29 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=102.9
Q ss_pred CCCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 2 VPPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 2 ~~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..|.+.|+|+|++|++|++. .+++||||++++++ ...+|+++++++.||.|||+|.|.+.+. ...|.|+|||
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~t~~~~~~~~nP~Wne~f~f~v~~~-----~~~L~v~V~d 79 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSEG-----TTELKAKIFD 79 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEESS-----CCEEEEEECC
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee-eeEEEEEEecCCCcEEEeeEEEEEEcCc-----cceEEEEEEE
Confidence 45789999999999999754 58999999999985 5778888876689999999999999863 3579999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
++.+ .|++||.+.|+|.++..... ....|+.+.. +++..|+|+|.+.|.|..
T Consensus 80 ~d~~~~d~~iG~~~i~L~~l~~~~~------~~~~~~~l~~-~~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 80 KDVGTEDDAVGEATIPLEPVFVEGS------IPPTAYNVVK-DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSE------EEEEEEEEEE-TTEEEEEEEEEEEEEECC
T ss_pred ecCCCCCCEEEEEEEEhHHhcccCC------cCcEEEEecC-CCccCEEEEEEEEEEeCC
Confidence 9866 68999999999999865321 2346887763 567899999999999864
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.5e-20 Score=156.70 Aligned_cols=119 Identities=16% Similarity=0.294 Sum_probs=99.2
Q ss_pred CCCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 2 VPPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 2 ~~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
+.+.|.|+|+|++|++|+. ..+.+||||++++++ ++++|+++++ +.||.|||+|.|.+.+. ...|.|+|||
T Consensus 2 ~~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~-~~~~T~~~~~-t~nP~wne~f~f~v~~~-----~~~L~i~V~d 74 (126)
T d2ep6a1 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYK-NLNPEWNKVFTFPIKDI-----HDVLEVTVFD 74 (126)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSS-CSSCCCCEEEEEEESCT-----TCEEEEEEEE
T ss_pred CCccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC-eEEEEEeeCC-ceeEEEEEEEEEEEecc-----CceeEEEEEE
Confidence 4678999999999999975 468899999999985 6789998875 79999999999999863 4689999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC--CCCCcceEEEEEEEEEe
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR--PSGRPQGILNLGITLLD 136 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr--~sGk~~G~L~LsV~f~p 136 (377)
++.+ .|++||++.|+|.++..+.. .|+.|.. ..++.+|+|+|++.|+.
T Consensus 75 ~~~~~~d~~lG~~~i~l~~l~~~~~---------~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 75 EDGDKPPDFLGKVAIPLLSIRDGQP---------NCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp EETTEEEEECCBCEEEGGGCCSSCC---------EECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred ccCCcCcceEEEEEEEHHHCCCCCc---------eEEEccccCCCCceeEEEEEEEEEEE
Confidence 9866 58999999999999865422 4666653 45678899999999875
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=4.8e-19 Score=146.69 Aligned_cols=117 Identities=16% Similarity=0.308 Sum_probs=96.6
Q ss_pred CeEEEEEEEEeecCCCC-----CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 5 PRVLEISIVSGHDLALV-----SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~-----~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
.+.|+|+|++|+||+.. .+.+||||++++++ ..+.+|++..+ +.||.|||+|.|.+.+. ....|.|+|
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~f~i~~~----~~~~L~v~V 76 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN----QENVLEITL 76 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT----SCCEEEEEE
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCC-CccceeceeeeecccCc----ccCcEEEEE
Confidence 47899999999999753 37899999999975 36788998765 79999999999999864 356899999
Q ss_pred EEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEe
Q 035970 78 YAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLD 136 (377)
Q Consensus 78 yD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p 136 (377)
||++..+|++||.+.|+|+++..+.. ...||+|.. ...|.|+|.+.+.+
T Consensus 77 ~d~d~~~d~~lG~~~i~L~~l~~~~~-------~~~~~~L~~---~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 77 MDANYVMDETLGTATFTVSSMKVGEK-------KEVPFIFNQ---VTEMVLEMSLEVAS 125 (126)
T ss_dssp EECCSSCCEEEEEEEEEGGGSCTTCE-------EEEEEEETT---TEEEEEEEEEECCC
T ss_pred EECCCCCCCeEEEEEEEHHHccCCCe-------EEEEEEccC---CCeEEEEEEEEEEe
Confidence 99998899999999999999865432 457999953 34688888887754
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=1.2e-18 Score=146.45 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=93.3
Q ss_pred eEEEEEEEEeecCCC----CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEE
Q 035970 6 RVLEISIVSGHDLAL----VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEI 77 (377)
Q Consensus 6 g~LeVtVISAkdL~~----~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeV 77 (377)
+.|+|+|++|++|+. .++.+||||++++.+ ..+.+|+++++++.||.|||+|.|.+..+. ...|.|+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~----~~~L~~~V 79 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD----LALVRFMV 79 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG----GCEEEEEE
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch----hceEEEEE
Confidence 689999999999953 246899999999953 357889888776789999999999987653 36799999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEEE
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITLL 135 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f~ 135 (377)
||++.+ .|++||++.|||.++.++ ..+++|+++.|.. .+.|.+.|.+.
T Consensus 80 ~D~d~~~~d~~iG~~~i~l~~l~~g----------~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 80 EDYDSSSKNDFIGQSTIPWNSLKQG----------YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp EECCTTTCCEEEEEEEEEGGGBCCE----------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEecCCCCCcEEEEEEEEEeccCCC----------CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 999976 588999999999998664 2589999888864 56777777764
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.78 E-value=1.4e-18 Score=147.26 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=98.1
Q ss_pred CCCCCeEEEEEEEEeecCCCC-------------CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCC
Q 035970 1 MVPPPRVLEISIVSGHDLALV-------------SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLT 67 (377)
Q Consensus 1 ~~~p~g~LeVtVISAkdL~~~-------------~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~ 67 (377)
|-.-.+.|+|+|++|++|++. .+.+||||+++++.....+|++..+ +.||.|||+|.|.+.+
T Consensus 1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~-t~~P~Wne~f~f~v~~---- 75 (136)
T d1gmia_ 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCN---- 75 (136)
T ss_dssp CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE----
T ss_pred CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcC-CCCccCccEEEEEEec----
Confidence 344468999999999999752 3578999999998655567887664 7899999999999975
Q ss_pred CCCceEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEecC
Q 035970 68 DETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLDNT 138 (377)
Q Consensus 68 ~~~s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p~s 138 (377)
...|.|+|||++.+ .|++||.+.|+|.++..... .....||+|. ++|+|+|.|.|.+.+
T Consensus 76 --~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~-----~~~~~w~~L~-----p~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 76 --GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS-----RHFEDWIDLE-----PEGKVYVIIDLSGSS 135 (136)
T ss_dssp --ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC-----SEEEEEEECB-----SSCEEEEEEEEEEEE
T ss_pred --CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCC-----cceeEEEeCC-----CCcEEEEEEEEEeCC
Confidence 36899999999875 68999999999999976532 2245799885 589999999998764
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=7.4e-18 Score=142.42 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=93.8
Q ss_pred CeEEEEEEEEeecCCCC--CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCc
Q 035970 5 PRVLEISIVSGHDLALV--SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAW 82 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~ 82 (377)
...|+|+|++|++|++. .+.+||||++.+++ ..++|++.++ +.||.|||.|.|.+.+ ...|.|+|||++.
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~-t~nP~wne~f~f~~~~------~~~l~~~V~d~d~ 76 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNN-TNSPKWKQPLTVIVTP------VSKLHFRVWSHQT 76 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSS-CSSCEEEEEEEEEECT------TCEEEEEEEECCS
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC-eEEeeEEEEe-cccEEEcceEEEEEEe------cceeEEEEEEccC
Confidence 47899999999999753 46899999999985 5789998764 7999999999999975 3689999999996
Q ss_pred C-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCC--CcceEEEEEEEEE
Q 035970 83 L-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSG--RPQGILNLGITLL 135 (377)
Q Consensus 83 ~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sG--k~~G~L~LsV~f~ 135 (377)
+ .|++||++.|+|.++...... .......++.+....+ ...|+|.|.+...
T Consensus 77 ~~~d~~iG~~~i~L~~l~~~~~~--~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~ 130 (133)
T d2nq3a1 77 LKSDVLLGTAALDIYETLKSNNM--KLEEVVVTLQLGGDKEPTETIGDLSICLDGL 130 (133)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTT--EESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred CCCCceEEEEEEEHHHhhhhcCC--ceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence 6 689999999999998654221 1122345566655433 5678888877654
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.9e-17 Score=140.19 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=83.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEcCcCC
Q 035970 5 PRVLEISIVSGHDLALVSKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAAAWLK 84 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~d~~~ 84 (377)
+..|+|+|+.|++|... +.+||||++.++ +.+.+|++.+ +.||.|||+|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~L~V~v~~a~~l~~~-~~~dpYv~l~~~-~~k~~T~~~k--~~nP~Wne~f~f~v~~~-----~~~L~v~V~d~~~~~ 71 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQ-EKFNTYVTLKVQ-NVKSTTIAVR--GSQPSWEQDFMFEINRL-----DLGLTVEVWNKGLIW 71 (128)
T ss_dssp CEEEEEEEEEEECSSCG-GGCEEEEEEEET-TEEEECCCEE--SSSCEEEEEEEEEECCC-----SSEEEEEEEECCSSC
T ss_pred CeEEEEEEEEEECCCCC-CCcCeEEEEEeC-CEEEEEEEec--CCCCeEEEEEEEeeccc-----cceEEEEEEeCCCcC
Confidence 36899999999999763 478999999998 4688888875 46999999999999874 468999999999889
Q ss_pred CceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 85 DALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 85 DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
|++||++.|||+++..... .....||+|..+
T Consensus 72 d~~lG~~~I~L~~l~~~~~-----~~~~~W~~L~~~ 102 (128)
T d2cjta1 72 DTMVGTVWIPLRTIRQSNE-----EGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEEEEEGGGSCBCSS-----CCCCEEEECBC-
T ss_pred CcceEEEEEEehhhccCCC-----CCCCeeEECCcc
Confidence 9999999999999975432 112369999754
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.5e-16 Score=133.13 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=83.7
Q ss_pred CeEEEEEEEEeecCCC--CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 5 PRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
.+.|.|+|++|+||+. ..+.+||||++++.+ ..+++|+++++ +.||+|||+|.|.+.... ....|.|+||
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~---~~~~L~i~V~ 89 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESD---KDRRLSVEIW 89 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGG---GGCEEEEEEE
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecC-CCCCccceEEEEEeEccc---cCCEEeEEEE
Confidence 4689999999999964 457899999999843 35788998765 799999999999987643 2357999999
Q ss_pred EcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeC
Q 035970 79 AAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr 119 (377)
|++.+ .|++||.+.|+|.++.... ...||+|..
T Consensus 90 d~d~~~~d~~iG~~~i~l~~l~~~~--------~~~W~~L~~ 123 (132)
T d1a25a_ 90 DWDLTSRNDFMGSLSFGISELQKAG--------VDGWFKLLS 123 (132)
T ss_dssp ECCSSSCCEEEEEEEEEHHHHTTCC--------EEEEEECBC
T ss_pred ecCCCCCCcEeEEEEEeHHHcCCCC--------CCeEEECCC
Confidence 99865 5889999999999985432 246999975
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=4.6e-16 Score=131.90 Aligned_cols=105 Identities=20% Similarity=0.342 Sum_probs=84.4
Q ss_pred CCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYA 79 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD 79 (377)
..+.|+|+|++|+||+.. .+.+||||++++.+ ..+.+|++.++ +.||.|||+|.|.+....+ ....|.|+|||
T Consensus 32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l--~~~~L~i~V~d 108 (143)
T d1rsya_ 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--GGKTLVMAVYD 108 (143)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHH--TTCEEEEEEEE
T ss_pred CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEecc-ccCcceeeeeEEEEEeecc--CCceEEEEEEE
Confidence 456899999999999643 57899999999943 35688998765 7999999999999865433 35689999999
Q ss_pred cCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 80 AAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 80 ~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
++.+ ++++||.+.|+|.++..... ...||+|.
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~~-------~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGHV-------TEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSC-------EEEEEECB
T ss_pred cCCCCCCcEEEEEEEEchhccCCCC-------CccEEeCC
Confidence 9865 58899999999999865422 35799885
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=4.2e-16 Score=130.35 Aligned_cols=108 Identities=21% Similarity=0.263 Sum_probs=84.0
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
+..+.|.|+|++|+||+. ..+.+||||++++.+ ..+++|+++++ +.||.|||+|.|.+....+ ....|.|+||
T Consensus 15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~--~~~~L~v~V~ 91 (130)
T d1dqva1 15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAEL--AQRKLHFSVY 91 (130)
T ss_dssp SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGG--SSCCCEEEEE
T ss_pred CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHc--CCCeEEEEEE
Confidence 467899999999999964 357899999999964 35688998765 7899999999999876544 3467999999
Q ss_pred EcCcC-CCceeEEEEEEccccc-CCcccCCCCCceeEEEEeeC
Q 035970 79 AAAWL-KDALIGSVRVLISHLF-GTLTHNSSSSTRYVALQVRR 119 (377)
Q Consensus 79 D~d~~-~DdlIG~a~IpLs~L~-~~~~~~~~~~~~~v~y~Lrr 119 (377)
|++.+ +|++||.+.|++.... .... + ...||+|.+
T Consensus 92 d~~~~~~d~~iG~~~i~~~~~l~~~~~---~---~~~W~~L~~ 128 (130)
T d1dqva1 92 DFDRFSRHDLIGQVVLDNLLELAEQPP---D---RPLWRDILE 128 (130)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCS---S---CCCCEECBC
T ss_pred EcCCCCCCceEEEEEECchhhhhcCCC---C---CcEEEeccc
Confidence 99865 6899999999865433 3221 1 235898874
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.5e-15 Score=125.73 Aligned_cols=105 Identities=16% Similarity=0.317 Sum_probs=79.8
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMI 75 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~V 75 (377)
+..+.|+|+|++|+||+.. .+.+||||++++.+ ..+++|++.++ +.||.|||+|.|. +....+ ....|.|
T Consensus 11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~f~~~~~~~l--~~~~L~i 87 (125)
T d2bwqa1 11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEI 87 (125)
T ss_dssp TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGG--GGCEEEE
T ss_pred CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcC-CCCCEEccEEEEeeeChhhc--CCCEEEE
Confidence 3467899999999999743 57899999999943 25688998874 7999999999996 554333 3467999
Q ss_pred EEEEcCcC---CCceeEEEEEEcccccCCcccCCCCCceeEEEEee
Q 035970 76 EIYAAAWL---KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVR 118 (377)
Q Consensus 76 eVyD~d~~---~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lr 118 (377)
+|||++.+ .+++||++.|+|.++.... ...||+|+
T Consensus 88 ~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~--------~~~Wy~L~ 125 (125)
T d2bwqa1 88 TLWDQARVREEESEFLGEILIELETALLDD--------EPHWYKLQ 125 (125)
T ss_dssp EEEEC-------CEEEEEEEEEGGGCCCSS--------CEEEEECC
T ss_pred EEEECCCCCCCCCeeEEEEEEEchhcCCCC--------CCEEEeCc
Confidence 99999854 3569999999999986542 13699874
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.1e-15 Score=123.79 Aligned_cols=110 Identities=22% Similarity=0.333 Sum_probs=83.0
Q ss_pred EEEEEEEEeecCCCCCCCCCeEEEEEECC-----CCeEEeEe-eCCCCCCCeeeeE-EEE-EeccCCCCCCCceEEEEEE
Q 035970 7 VLEISIVSGHDLALVSKSMKTYSVAWVDP-----ERKLTTRV-DQNGLNNPSWNEK-FVF-RVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 7 ~LeVtVISAkdL~~~~g~~DPYVvV~L~p-----~~k~rTrV-~k~gg~NP~WNEt-F~F-~V~~~~L~~~~s~L~VeVy 78 (377)
+|.|+||+|++|+.. +.||||+|.+.+ ..+.+|++ .++++.||.|||+ |.| .+..+. -..|.|.||
T Consensus 2 tl~V~Visaq~L~~~--~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~----l~~L~f~V~ 75 (122)
T d2zkmx2 2 TLSITVISGQFLSER--SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE----LASLRVAVM 75 (122)
T ss_dssp EEEEEEEEEESCCSS--CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG----GCEEEEEEE
T ss_pred EEEEEEEEeeCCCCC--CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCc----ccEEEEEEE
Confidence 699999999999653 589999999842 24455554 3566899999976 444 355443 368999999
Q ss_pred EcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCc--ceEEEEEEEEE
Q 035970 79 AAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRP--QGILNLGITLL 135 (377)
Q Consensus 79 D~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~--~G~L~LsV~f~ 135 (377)
|++ |++||++.|||+.+.+++ .+++|+++.|.+ ...|.+.|.+.
T Consensus 76 D~d---~~~lG~~~ipl~~l~~Gy----------R~vpL~~~~g~~l~~~~L~v~i~~~ 121 (122)
T d2zkmx2 76 EEG---NKFLGHRIIPINALNSGY----------HHLCLHSESNMPLTMPALFIFLEMK 121 (122)
T ss_dssp ETT---TEEEEEEEEEGGGBCCEE----------EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred CCC---CCEEEEEEEEcccCcCCc----------eEEEccCCCcCCCCCceEEEEEEEE
Confidence 975 899999999999998774 478999988873 45566666553
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.6e-15 Score=126.83 Aligned_cols=106 Identities=11% Similarity=0.154 Sum_probs=85.1
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCeEEEEEECCC---CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEEEc
Q 035970 4 PPRVLEISIVSGHDLALVSKSMKTYSVAWVDPE---RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIYAA 80 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~---~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVyD~ 80 (377)
..+.|.|+|+.|++|. ..+.+||||++.+.+. ..++|++.++ +.||+|||.|.|.+....+ ....|.|+|||+
T Consensus 24 ~~~~L~V~v~~a~~L~-~~g~~dpyVkv~l~~~~~~~~~kT~v~~~-~~~P~wne~f~f~v~~~~l--~~~~L~~~V~d~ 99 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSN-HDGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEEL--PTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEECCC-CSSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSS--TTCEEEEEEEEC
T ss_pred CCCEEEEEEEEcCCCC-CCCCcCcEEEEEECCCCCccceeeeEECC-CCCceEeeeEEEEeeehhc--cceEEEEEEeee
Confidence 4568999999999995 4567899999999654 3467888765 7999999999999976544 467899999999
Q ss_pred CcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCC
Q 035970 81 AWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRP 120 (377)
Q Consensus 81 d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~ 120 (377)
+.+ .|++||++.|+|.++..... ...||.|+..
T Consensus 100 ~~~~~~~~iG~~~i~L~~l~~~~~-------~~~W~~L~~~ 133 (138)
T d1wfma_ 100 DRFSRHSVAGELRLGLDGTSVPLG-------AAQWGELKTS 133 (138)
T ss_dssp CSSCTTSCSEEEEEESSSSSSCTT-------CCEEEECCCC
T ss_pred cccccceeeeEEEEEhHHccCCCC-------ceEeEeCCCC
Confidence 865 58999999999999854322 2479999753
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=6.2e-15 Score=124.45 Aligned_cols=95 Identities=20% Similarity=0.329 Sum_probs=76.0
Q ss_pred CCeEEEEEEEEeecCCCC--C-CCCCeEEEEEECC--CCeEEeEeeCCCCCCCeeeeEEEEE-eccCCCCCCCceEEEEE
Q 035970 4 PPRVLEISIVSGHDLALV--S-KSMKTYSVAWVDP--ERKLTTRVDQNGLNNPSWNEKFVFR-VDDRFLTDETSAIMIEI 77 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~~--~-g~~DPYVvV~L~p--~~k~rTrV~k~gg~NP~WNEtF~F~-V~~~~L~~~~s~L~VeV 77 (377)
....|.|+|++|+||+.. . +.+||||++++.+ ..+++|++.++ +.||.|||+|.|. +....+ ....|.|+|
T Consensus 20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~L~~~V 96 (138)
T d1ugka_ 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQI--QELALHFTI 96 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTG--GGCEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeC-CCCCceeeEEEEeeeCHHHc--ccceEEEEE
Confidence 346899999999999753 3 3579999999953 46788998765 7999999999997 554333 346799999
Q ss_pred EEcCcC-CCceeEEEEEEcccccCC
Q 035970 78 YAAAWL-KDALIGSVRVLISHLFGT 101 (377)
Q Consensus 78 yD~d~~-~DdlIG~a~IpLs~L~~~ 101 (377)
||.+.+ +|++||++.|+|.++...
T Consensus 97 ~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 97 LSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCT
T ss_pred EECCCCCCCcEEEEEEEEcccccCC
Confidence 999865 689999999999998543
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=5.1e-16 Score=130.49 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=81.9
Q ss_pred CeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC-------------CeEEeEeeCCCCCCCeeeeEEEEEe-ccCCCCC
Q 035970 5 PRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE-------------RKLTTRVDQNGLNNPSWNEKFVFRV-DDRFLTD 68 (377)
Q Consensus 5 ~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~-------------~k~rTrV~k~gg~NP~WNEtF~F~V-~~~~L~~ 68 (377)
.+.|.|+|++|+||+. ..+.+||||++++.+. .+.+|+++++ +.||.|||+|.|.+ ....+
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~-- 93 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQL-- 93 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHH--
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcC-CCCceeEEEEEEeeeccccc--
Confidence 4689999999999964 3578999999999532 1245777664 68999999999973 32222
Q ss_pred CCceEEEEEEEcCcC-CCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCC
Q 035970 69 ETSAIMIEIYAAAWL-KDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPS 121 (377)
Q Consensus 69 ~~s~L~VeVyD~d~~-~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~s 121 (377)
....|.|+|||++.+ +|++||++.|+|.++..... ...||+|...+
T Consensus 94 ~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~-------~~~W~~L~~~~ 140 (142)
T d1rh8a_ 94 MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-------TPRWYPLKEQT 140 (142)
T ss_dssp TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT-------CCEEEECBCCC
T ss_pred CCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCC-------ceEEEECcCcC
Confidence 356899999999865 58999999999999865432 24799998653
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=3.5e-15 Score=124.83 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=88.7
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEEEE
Q 035970 3 PPPRVLEISIVSGHDLALVSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIEIY 78 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~VeVy 78 (377)
.|.-.+.|.++.+..++..++.+||||+|.+++. ...+|++.++ +.||+|||+|.|.|.+ ...|.|.||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kk-T~nP~WnE~F~~~v~~------~~~l~i~V~ 74 (123)
T d1bdya_ 2 APFLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKP-TMYPEWKSTFDAHIYE------GRVIQIVLM 74 (123)
T ss_dssp CEEEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSC-CBCCCTTCEEEEECCT------TCEEEEEEE
T ss_pred CCeEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCC-CCCcccceEEEEEEcc------ccEEEEEEE
Confidence 3444555666666667777889999999999632 2345776654 8999999999999985 468999999
Q ss_pred EcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCCcceEEEEEEEEEe
Q 035970 79 AAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGRPQGILNLGITLLD 136 (377)
Q Consensus 79 D~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk~~G~L~LsV~f~p 136 (377)
|++ |+++|.+.|++..|...... .......|+.|. ++|.|+|.++|..
T Consensus 75 d~d---d~~~g~~~i~l~~l~~~~~~--~~~~~~~W~~L~-----~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 75 RAA---EDPMSEVTVGVSVLAERCKK--NNGKAEFWLDLQ-----PQAKVLMCVQYFL 122 (123)
T ss_dssp EET---TEEEEEEEEEHHHHHHHHHT--TTTEEEEEEECB-----SSCEEEEEEEEEE
T ss_pred Ecc---ccccCccEEehhheeecccc--CCCcccEEEeCC-----CCEEEEEEEEEec
Confidence 975 78999999999998654221 123456899874 6899999999864
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=6.2e-15 Score=127.02 Aligned_cols=115 Identities=19% Similarity=0.236 Sum_probs=85.3
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|++|+. ..+.+||||++.+.+. .+.+|++.+ ++.||+|||+|.|.+....+ ....|.|+
T Consensus 22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~F~v~~~~l--~~~~l~i~ 98 (157)
T d1uowa_ 22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQI--QKVQVVVT 98 (157)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGGG--GGCEEEEE
T ss_pred CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceeccccc-CCCCcccCCeEEEEecHHHc--CccEEEEE
Confidence 346789999999999974 3578999999998643 235788876 47999999999999987644 35689999
Q ss_pred EEEcCcC-CCceeEEEEEEcccccCCccc-----CCCCCceeEEEEeeCC
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLFGTLTH-----NSSSSTRYVALQVRRP 120 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~~~~~~-----~~~~~~~~v~y~Lrr~ 120 (377)
|||++.+ ++++||++.|++........| .........||+|+.+
T Consensus 99 v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 99 VLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (157)
T ss_dssp EEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred EcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence 9999866 589999999999764221110 0011234579988743
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=9.7e-15 Score=122.89 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|+||+.. .+.+||||++++.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|.
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~--~~~~l~i~ 88 (138)
T d1w15a_ 12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESL--EEISVEFL 88 (138)
T ss_dssp TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSS--TTEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHh--CccEEEEE
Confidence 3457899999999999743 578899999998432 3457887764 7999999999999976654 45679999
Q ss_pred EEEcCcC-CCceeEEEEEEcccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISHL 98 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L 98 (377)
|||++.+ ++++||++.|++...
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 89 VLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EEECCTTSCCEEEEEEEESTTCC
T ss_pred EEeCCCCCCCCEEEEEEEcchhC
Confidence 9999865 689999999998764
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=1.8e-14 Score=120.17 Aligned_cols=93 Identities=20% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCeEEEEEEEEeecCCC--CCCCCCeEEEEEECC----CCeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLAL--VSKSMKTYSVAWVDP----ERKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~--~~g~~DPYVvV~L~p----~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|.|+|++|+||+. ..+.+||||++++.+ ..+++|++.++ +.||.|||+|.|.+....+ ....|.|.
T Consensus 12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~v~ 88 (137)
T d2cm5a1 12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDL--AKKSLDIS 88 (137)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGG--GGCEEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHc--cccEEEEE
Confidence 456789999999999974 357899999999853 25678998775 7999999999999976544 35689999
Q ss_pred EEEcCcC-CCceeEEEEEEcccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISHL 98 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L 98 (377)
||+.+.+ +|++||++.|++..+
T Consensus 89 v~~~~~~~~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 89 VWDYDIGKSNDYIGGCQLGISAK 111 (137)
T ss_dssp EEECCSSSCCEEEEEEEEETTCC
T ss_pred eeeCCCCCCCCEEEEEEeCcccc
Confidence 9999865 688999999999764
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=2.2e-14 Score=121.45 Aligned_cols=94 Identities=24% Similarity=0.362 Sum_probs=76.6
Q ss_pred CCCeEEEEEEEEeecCCCC--CCCCCeEEEEEECCC----CeEEeEeeCCCCCCCeeeeEEEEEeccCCCCCCCceEEEE
Q 035970 3 PPPRVLEISIVSGHDLALV--SKSMKTYSVAWVDPE----RKLTTRVDQNGLNNPSWNEKFVFRVDDRFLTDETSAIMIE 76 (377)
Q Consensus 3 ~p~g~LeVtVISAkdL~~~--~g~~DPYVvV~L~p~----~k~rTrV~k~gg~NP~WNEtF~F~V~~~~L~~~~s~L~Ve 76 (377)
+..+.|+|+|++|+||+.. .+.+||||++.+.+. .+.+|++.++ +.||.|||+|.|.|....+ ....|.|.
T Consensus 17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~--~~~~l~v~ 93 (145)
T d1dqva2 17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESV--ENVGLSIA 93 (145)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGG--GSCCCCCE
T ss_pred CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeC-CCCceecceEEEEEehhhc--CCCEEEEE
Confidence 3467899999999999643 578899999999643 3578998765 7999999999999876544 35679999
Q ss_pred EEEcCcC-CCceeEEEEEEccccc
Q 035970 77 IYAAAWL-KDALIGSVRVLISHLF 99 (377)
Q Consensus 77 VyD~d~~-~DdlIG~a~IpLs~L~ 99 (377)
|||++.+ +|++||.+.|+|..+.
T Consensus 94 v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 94 VVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp EEECCSSSCCEEEEECCCSSCTTC
T ss_pred EEecCCCCCCcEEEEEEECchHcC
Confidence 9999865 5889999999997753
|
| >d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Fantom species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.87 E-value=1.8 Score=35.52 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=82.3
Q ss_pred CCeEEEEEEEEeecCCC----C-CCCCCeEEEEEECCCCeEEeEeeCCCCCCCeeeeEEEEEeccCC--CC-CCCceEEE
Q 035970 4 PPRVLEISIVSGHDLAL----V-SKSMKTYSVAWVDPERKLTTRVDQNGLNNPSWNEKFVFRVDDRF--LT-DETSAIMI 75 (377)
Q Consensus 4 p~g~LeVtVISAkdL~~----~-~g~~DPYVvV~L~p~~k~rTrV~k~gg~NP~WNEtF~F~V~~~~--L~-~~~s~L~V 75 (377)
..+.++|.|.++.=-+. . ...+..||.+.+-.-..+.|++.. +.+|.+|-+..|.|.-.. ++ -....+.|
T Consensus 8 gEnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~l 85 (142)
T d2yrba1 8 GENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL 85 (142)
T ss_dssp SCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred CCcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCCEEE
Confidence 35678899888732111 0 123445777766433567799875 589999999888876542 10 13457899
Q ss_pred EEEEcCcCCCceeEEEEEEcccccCCcccCCCCCceeEEEEeeCCCCC--cceEEEEEEEEE
Q 035970 76 EIYAAAWLKDALIGSVRVLISHLFGTLTHNSSSSTRYVALQVRRPSGR--PQGILNLGITLL 135 (377)
Q Consensus 76 eVyD~d~~~DdlIG~a~IpLs~L~~~~~~~~~~~~~~v~y~Lrr~sGk--~~G~L~LsV~f~ 135 (377)
+||......-..|+.+.|.|..++.... . .+..-+|..+.|. .-|.|.+-|++.
T Consensus 86 elhqa~g~~~~tvA~g~i~l~~lLd~~~-----r-~~~s~~l~g~~~~~~~~G~leyw~rlr 141 (142)
T d2yrba1 86 EVHQAYSTEYETIAACQLKFHEILEKSG-----R-IFCTASLIGTKGDIPNFGTVEYWFRLR 141 (142)
T ss_dssp EEEEECSSCEEEEEEEEECCSHHHHCCS-----C-EEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred EEEeecCCCcceeEEEEEEhhHhhCccc-----c-ccceeEEEccCCCcceEEEEEEEEEEE
Confidence 9987653344689999999999986532 1 3455667766554 689998887763
|