Citrus Sinensis ID: 035971
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | 2.2.26 [Sep-21-2011] | |||||||
| Q5REP4 | 665 | Kinesin-like protein KIF2 | yes | no | 0.895 | 0.827 | 0.266 | 4e-46 | |
| Q14807 | 665 | Kinesin-like protein KIF2 | yes | no | 0.895 | 0.827 | 0.272 | 1e-45 | |
| A8WFU8 | 634 | Kinesin-like protein KIF2 | yes | no | 0.931 | 0.902 | 0.263 | 8e-41 | |
| A6QPL4 | 662 | Kinesin-like protein KIF2 | yes | no | 0.477 | 0.442 | 0.319 | 1e-39 | |
| Q3V300 | 660 | Kinesin-like protein KIF2 | yes | no | 0.478 | 0.445 | 0.310 | 2e-38 | |
| Q5I0E8 | 657 | Kinesin-like protein KIF2 | yes | no | 0.473 | 0.442 | 0.313 | 2e-37 | |
| Q9I869 | 651 | Kinesin-like protein KIF2 | N/A | no | 0.509 | 0.480 | 0.309 | 4e-37 | |
| Q6P3R1 | 639 | Kinesin-like protein KIF2 | yes | no | 0.480 | 0.461 | 0.315 | 4e-37 | |
| Q7ZYL5 | 650 | Kinesin-like protein KIF2 | N/A | no | 0.477 | 0.450 | 0.306 | 2e-34 | |
| Q9BVG8 | 833 | Kinesin-like protein KIFC | no | no | 0.508 | 0.374 | 0.300 | 4e-34 |
| >sp|Q5REP4|KIF22_PONAB Kinesin-like protein KIF22 OS=Pongo abelii GN=KIF22 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 173/650 (26%), Positives = 294/650 (45%), Gaps = 100/650 (15%)
Query: 15 KARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVS-FGEQPSSRKECYKLDYCYEQN 73
+ RV ++R F D A +++ C++ G DS S+ ++ + + K Y+ D Y +
Sbjct: 43 RVRVAVRLRPFVDGTAGASDPPCVR---GMDSCSLEIANWRNHQETLK--YQFDAFYGER 97
Query: 74 EGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSI 133
I+A V+P++ + G NA+++A G G+GKT + GS E+PG+ A+ ++L +
Sbjct: 98 STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQL 157
Query: 134 SEKMGK-------SITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKS 186
+ + G S+T+S+ EI+Q+ V DLLDP ++ I E+ +G I + GL+Q P+ S
Sbjct: 158 TREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLTQKPITS 217
Query: 187 ISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLP----TGKMNFVDLAG 242
++F++ ++ +R RSH L+V V P GK+ +DLAG
Sbjct: 218 FADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAG 277
Query: 243 YQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKS 302
+D RR +G E+ +N S++ L VV ALN VPYR+SKLTR+LQ+SLG +
Sbjct: 278 SEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSA 337
Query: 303 KILMLTCLLPRSVSTTKTQTGSQMHSSTKKATGVASVVKGRYSLKFSVQVRKLFDEAIQS 362
+++ + P T + + +K+ R +E++Q
Sbjct: 338 HSILIANIAPERCFYLDTVSALNFAARSKEVIN-----------------RPFTNESLQP 380
Query: 363 --TKSEKMSQKESSSSDMASTIQSLVEEQDDSPLAIVYQ----------QETTESDK--- 407
K+SQKE A + EE+ SP + Q+ + D
Sbjct: 381 HVLGPVKLSQKELLGPPEAKRARGPEEEEIGSPEPMAAPASASQKLSPLQKLSSMDPAML 440
Query: 408 ------DSFLHTQENQGKI---TPNADRSLKDLSLVEESMYIQIIKA----------GQI 448
D L +Q +QG TP +R + ++ E+ + I+ +K Q
Sbjct: 441 ERLLSLDRLLASQGSQGAPLLSTPKRERMVLMKTVEEKDLEIERLKTKQKELEAKMLAQK 500
Query: 449 IDKENNHFLINKDMSPPLSERLQEISNNLKQLISSTPQCIEIPPKNDTSNIQACA----- 503
+++ NH M PLS R ++ LK+ + Q I+ + + I
Sbjct: 501 AEEKENHC---PTMLRPLSHRTVTVAKPLKKAVVMPLQLIQEQAASPNAEIHILKNKGRK 557
Query: 504 ------DIVEPKTPDGSMIVYEKWEIANMKSPWETFNMRSSGMKNSLVQEYLKLLNTGGK 557
D +EP+ + WE+ SP + R Q+ L LLN G
Sbjct: 558 RKLESLDALEPEEK-----AEDCWEL--QISPELLAHGR---------QKILDLLNEGSA 601
Query: 558 EDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDI-GLSAKQIKGMMK 606
DL+ L+ IG K+A I+ RE PF ++DL+ + G++ KQ++ +K
Sbjct: 602 RDLRSLQRIGPKKAQLIVGWRELH-GPFSQVEDLERVEGITGKQMESFLK 650
|
Kinesin family that is involved in spindle formation and the movements of chromosomes during mitosis and meiosis. Binds to microtubules and to DNA. Pongo abelii (taxid: 9601) |
| >sp|Q14807|KIF22_HUMAN Kinesin-like protein KIF22 OS=Homo sapiens GN=KIF22 PE=1 SV=5 | Back alignment and function description |
|---|
| >sp|A8WFU8|KIF22_DANRE Kinesin-like protein KIF22 OS=Danio rerio GN=kif22 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|A6QPL4|KIF22_BOVIN Kinesin-like protein KIF22 OS=Bos taurus GN=KIF22 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q3V300|KIF22_MOUSE Kinesin-like protein KIF22 OS=Mus musculus GN=Kif22 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q5I0E8|KIF22_RAT Kinesin-like protein KIF22 OS=Rattus norvegicus GN=Kif22 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9I869|KF22A_XENLA Kinesin-like protein KIF22-A OS=Xenopus laevis GN=kif22-a PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q6P3R1|KIF22_XENTR Kinesin-like protein KIF22 OS=Xenopus tropicalis GN=kif22 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q7ZYL5|KF22B_XENLA Kinesin-like protein KIF22-B OS=Xenopus laevis GN=kif22-b PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | ||||||
| 225464499 | 667 | PREDICTED: kinesin-like protein KIF22-li | 0.957 | 0.881 | 0.508 | 1e-173 | |
| 302143839 | 643 | unnamed protein product [Vitis vinifera] | 0.938 | 0.895 | 0.491 | 1e-163 | |
| 224134869 | 656 | predicted protein [Populus trichocarpa] | 0.942 | 0.882 | 0.482 | 1e-153 | |
| 356529192 | 687 | PREDICTED: kinesin-related protein 3-lik | 0.951 | 0.850 | 0.435 | 1e-131 | |
| 334187882 | 701 | ATP binding microtubule motor family pro | 0.921 | 0.807 | 0.411 | 1e-121 | |
| 449469336 | 617 | PREDICTED: kinesin-like protein KIF22-li | 0.890 | 0.886 | 0.417 | 1e-119 | |
| 307136491 | 616 | kinesin-like protein [Cucumis melo subsp | 0.890 | 0.887 | 0.410 | 1e-119 | |
| 225440360 | 659 | PREDICTED: kinesin-like protein KIF22-B | 0.969 | 0.902 | 0.348 | 3e-85 | |
| 218196925 | 584 | hypothetical protein OsI_20222 [Oryza sa | 0.885 | 0.931 | 0.335 | 2e-84 | |
| 115464301 | 584 | Os05g0459400 [Oryza sativa Japonica Grou | 0.885 | 0.931 | 0.335 | 6e-84 |
| >gi|225464499|ref|XP_002272003.1| PREDICTED: kinesin-like protein KIF22-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 346/680 (50%), Positives = 443/680 (65%), Gaps = 92/680 (13%)
Query: 5 KADTG-LNISKKARVIAKIRGFADLEAESAN-----WVCIQKPNGEDSDSVTVSFGEQPS 58
KAD+ N S+K R++ KIRGF DLE++S+ W+ + KPNGE S+SVT+SFG+ P+
Sbjct: 10 KADSSSWNPSRKIRIVGKIRGFTDLESQSSTGFSGPWISVGKPNGEFSESVTLSFGDHPT 69
Query: 59 SRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYE 118
SRKE Y++DYCY Q+E NG+IF+RE+KP+IS V NG A+++A GA+GSGKT IQGS E
Sbjct: 70 SRKESYEIDYCYAQDEDNGLIFSREIKPMISRVCNGHTASVIAYGARGSGKTYTIQGSDE 129
Query: 119 EPGLAALAVDEILSISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKG 178
+PGLAALA+ E+L ++ ++GKS++IS +E++QDHVYDLLDPK+ V +LE+ QGKIQLKG
Sbjct: 130 KPGLAALAMTELLQMAGEIGKSVSISSFEVYQDHVYDLLDPKRPPVLVLEDAQGKIQLKG 189
Query: 179 LSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPV---SNFLPTGKM 235
LSQ PV SISEF +LY + SRKP QKI +LPRRSHKGL+V VS +N + GKM
Sbjct: 190 LSQAPVNSISEFYRLYFNGFGSRKPAQKIPTELPRRSHKGLMVYVSSQNSETNLV--GKM 247
Query: 236 NFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQ 295
NFVDLAGY+D R+KS +G +ENTK+NKS+Y L NVVYAL+ NESHVPYRESKLTRMLQ
Sbjct: 248 NFVDLAGYEDTRKKSVDGPNLMENTKINKSLYALQNVVYALSVNESHVPYRESKLTRMLQ 307
Query: 296 ESLGCKSKILMLTCLLP--------------RSV-------------------------- 315
+S G ++ILM+TCL P RS
Sbjct: 308 DSFGGMNQILMVTCLNPSFCQDTIYSVSLASRSYQRAFTNSTKKIKSSAKPTGLSALKNG 367
Query: 316 ------STTKTQTGSQMHSSTKKATGVASVVKGRYSLKFSVQVRKLFDEAIQSTKSEKMS 369
ST K QT SQ+H S KKA S+VKG RKLF EA S SEK
Sbjct: 368 KPTGVSSTVKKQTSSQVHFSDKKANFTDSIVKG----------RKLFKEANHSISSEKAD 417
Query: 370 QKESSSSDMASTIQSLVEEQDDSPLAIVYQQETTE-------------SDKDSFLHTQEN 416
S +S + ++Q V+ D LA V +E +K S H +N
Sbjct: 418 SSSSIASVIEPSLQEEVKSISDVSLATVPSEEENSLSVAVTDTEPVFVEEKVSAYHDNDN 477
Query: 417 QGKITPNADRSLKDLSLVEESMYIQIIKAGQIIDKENNHFLINKDMSPPLSERLQEISNN 476
++T + S L+L+EE +I I +KEN N + SPPLS RL+E+SNN
Sbjct: 478 HPEVT--SGNSSTTLALIEEGHHI-------IEEKENKSLFANGNGSPPLSARLRELSNN 528
Query: 477 LKQLISSTPQCIEIPPKNDTSNIQACADIVEPKTP--DGSMIVYEKWEIANMKSPWETFN 534
LK L SSTP CI++ P+NDTS+ + +VEPKTP + + +KWE+AN+ SPWE +
Sbjct: 529 LKSLYSSTPVCIKL-PENDTSSTNQASALVEPKTPAVEKKLRGNDKWEVANISSPWEALH 587
Query: 535 MRSSGMKNSLVQEYLKLLNTGGKEDLKRLKGIGEKRASYILELREESPEPFKNLDDLKDI 594
M SS MK SLV+E LK LN+ KE+LK LKGIGEKR++YILELR+ESPEPFK+LDDLKDI
Sbjct: 588 MHSSRMKKSLVEETLKFLNSANKEELKGLKGIGEKRSTYILELRQESPEPFKSLDDLKDI 647
Query: 595 GLSAKQIKGMMKKEMECLFN 614
GLS KQIKGMMKK +E + N
Sbjct: 648 GLSEKQIKGMMKKVVEEVLN 667
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143839|emb|CBI22700.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224134869|ref|XP_002321925.1| predicted protein [Populus trichocarpa] gi|222868921|gb|EEF06052.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356529192|ref|XP_003533180.1| PREDICTED: kinesin-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|334187882|ref|NP_197779.4| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|332005850|gb|AED93233.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|449469336|ref|XP_004152377.1| PREDICTED: kinesin-like protein KIF22-like [Cucumis sativus] gi|449488639|ref|XP_004158124.1| PREDICTED: kinesin-like protein KIF22-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|307136491|gb|ADN34291.1| kinesin-like protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
| >gi|225440360|ref|XP_002270444.1| PREDICTED: kinesin-like protein KIF22-B [Vitis vinifera] gi|297740374|emb|CBI30556.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|218196925|gb|EEC79352.1| hypothetical protein OsI_20222 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
| >gi|115464301|ref|NP_001055750.1| Os05g0459400 [Oryza sativa Japonica Group] gi|47900315|gb|AAT39162.1| putative kinesin-like DNA binding protein [Oryza sativa Japonica Group] gi|113579301|dbj|BAF17664.1| Os05g0459400 [Oryza sativa Japonica Group] gi|215706986|dbj|BAG93446.1| unnamed protein product [Oryza sativa Japonica Group] gi|222631848|gb|EEE63980.1| hypothetical protein OsJ_18806 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | ||||||
| TAIR|locus:2180122 | 628 | AT5G02370 [Arabidopsis thalian | 0.5 | 0.488 | 0.436 | 4.1e-79 | |
| UNIPROTKB|A6QPL4 | 662 | KIF22 "Kinesin-like protein KI | 0.478 | 0.444 | 0.317 | 4.3e-44 | |
| UNIPROTKB|Q14807 | 665 | KIF22 "Kinesin-like protein KI | 0.478 | 0.442 | 0.323 | 5.8e-44 | |
| UNIPROTKB|E2RRZ0 | 664 | KIF22 "Uncharacterized protein | 0.478 | 0.442 | 0.317 | 3.4e-43 | |
| UNIPROTKB|I3LNN6 | 663 | KIF22 "Uncharacterized protein | 0.478 | 0.443 | 0.310 | 1.9e-42 | |
| MGI|MGI:109233 | 660 | Kif22 "kinesin family member 2 | 0.478 | 0.445 | 0.313 | 1.1e-41 | |
| ZFIN|ZDB-GENE-080204-34 | 634 | kif22 "kinesin family member 2 | 0.488 | 0.473 | 0.316 | 1.1e-41 | |
| UNIPROTKB|B7Z265 | 597 | KIF22 "cDNA FLJ53835, highly s | 0.405 | 0.417 | 0.342 | 3.2e-41 | |
| RGD|1311886 | 657 | Kif22 "kinesin family member 2 | 0.473 | 0.442 | 0.320 | 4.5e-41 | |
| UNIPROTKB|H3BRB3 | 611 | KIF22 "Kinesin-like protein KI | 0.405 | 0.407 | 0.342 | 1.9e-40 |
| TAIR|locus:2180122 AT5G02370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
Identities = 138/316 (43%), Positives = 192/316 (60%)
Query: 3 RTKADTGLNISKKARVIAKIRGFA--DLEAESANW-VCIQKPNGE--DSDSVTVSFGEQP 57
+TK +IS RV+ ++R F ++ ES + C+ G+ D+ V V +
Sbjct: 9 KTKLLDSSSISN-VRVVLRVRPFLPREISDESCDGRSCVSVIGGDGGDTSEVAVYLKDPD 67
Query: 58 SSRKECYKLDYCYEQNEGN-GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGS 116
S R E Y+LD Y + + N IF REV PLI +F+G NAT++A GA GSGKT +QG
Sbjct: 68 SCRNESYQLDAFYGREDDNVKHIFDREVSPLIPGIFHGFNATVLAYGATGSGKTFTMQGI 127
Query: 117 YEEPGLAALAVDEILSISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQL 176
E PGL L + ILS+ EK IS+YE++ D +DLL+ K E+ + ++ G++ L
Sbjct: 128 DELPGLMPLTMSTILSMCEKTRSRAEISYYEVYMDRCWDLLEVKDNEIAVWDDKDGQVHL 187
Query: 177 KGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSNFLPTGKMN 236
KGLS VPVKS+SEFQ+ Y+ RK D+ RSH L+++V+ S L TGK+N
Sbjct: 188 KGLSSVPVKSMSEFQEAYLCGVQRRKVAHTGLNDVSSRSHGVLVISVT--SQGLVTGKIN 245
Query: 237 FVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQE 296
+DLAG +D RR EG E+ K+N+S++ L NVVYALN N VPYRE+KLTR+LQ+
Sbjct: 246 LIDLAGNEDNRRTGNEGIRLQESAKINQSLFALSNVVYALNNNLPRVPYRETKLTRILQD 305
Query: 297 SLGCKSKILMLTCLLP 312
SLG S+ LM+ CL P
Sbjct: 306 SLGGTSRALMVACLNP 321
|
|
| UNIPROTKB|A6QPL4 KIF22 "Kinesin-like protein KIF22" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q14807 KIF22 "Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RRZ0 KIF22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3LNN6 KIF22 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:109233 Kif22 "kinesin family member 22" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-080204-34 kif22 "kinesin family member 22" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B7Z265 KIF22 "cDNA FLJ53835, highly similar to Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1311886 Kif22 "kinesin family member 22" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|H3BRB3 KIF22 "Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | eugene3.00151235 | hypothetical protein (656 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 614 | |||
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 2e-72 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 2e-66 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-55 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 2e-55 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 3e-47 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 1e-44 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-41 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 2e-39 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 2e-39 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-38 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 2e-34 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 3e-34 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 1e-33 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 4e-33 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 7e-33 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 5e-27 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 5e-27 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 9e-18 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 1e-16 | |
| pfam12836 | 65 | pfam12836, HHH_3, Helix-hairpin-helix motif | 6e-07 | |
| COG1555 | 149 | COG1555, ComEA, DNA uptake protein and related DNA | 2e-05 | |
| TIGR01259 | 120 | TIGR01259, comE, comEA protein | 0.003 |
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 2e-72
Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 4/299 (1%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
RV+ ++R F D E +S++ V + + SV + + + Y+ D Y
Sbjct: 3 RVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIE-NPRNRGETKKYQFDAFYGTECTQ 61
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK 136
IF+REVKP++ + +G NAT+ A G+ G+GKT + G EPGL + ++L + K
Sbjct: 62 EDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRK 121
Query: 137 MGK--SITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISEFQKLY 194
+ ++S+YEI+ + VYDLL+P ++E+ I E+ G I + GL+ P+KS++EF++ Y
Sbjct: 122 QAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAY 181
Query: 195 ISMHNSRKPVQKITMDLPRRSHKGLIVNV-SPVSNFLPTGKMNFVDLAGYQDIRRKSTEG 253
I +R D RSH L + V P SN GK+N +DLAG +D RR EG
Sbjct: 182 IPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKLNLIDLAGSEDNRRTGNEG 241
Query: 254 SIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLP 312
E+ +N S++ L VV ALN +PYRESKLTR+LQ+SLG S+ +M+ + P
Sbjct: 242 IRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAP 300
|
Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|205097 pfam12836, HHH_3, Helix-hairpin-helix motif | Back alignment and domain information |
|---|
| >gnl|CDD|224472 COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|213597 TIGR01259, comE, comEA protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG1555 | 149 | ComEA DNA uptake protein and related DNA-binding p | 99.36 | |
| PF12836 | 65 | HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE | 99.31 | |
| TIGR01259 | 120 | comE comEA protein. This model describes the ComEA | 99.04 | |
| TIGR00426 | 69 | competence protein ComEA helix-hairpin-helix repea | 98.92 | |
| PRK02515 | 132 | psbU photosystem II complex extrinsic protein prec | 98.76 | |
| PF00633 | 30 | HHH: Helix-hairpin-helix motif; InterPro: IPR00044 | 98.02 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 97.62 | |
| PF14579 | 90 | HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI | 97.45 | |
| COG1491 | 202 | Predicted RNA-binding protein [Translation, riboso | 97.45 | |
| PF04919 | 181 | DUF655: Protein of unknown function (DUF655); Inte | 97.4 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 96.32 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 96.12 | |
| COG2183 | 780 | Tex Transcriptional accessory protein [Transcripti | 95.32 | |
| cd00141 | 307 | NT_POLXc Nucleotidyltransferase (NT) domain of fam | 95.1 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 95.05 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 94.84 | |
| smart00278 | 26 | HhH1 Helix-hairpin-helix DNA-binding motif class 1 | 94.82 | |
| PRK14606 | 188 | ruvA Holliday junction DNA helicase RuvA; Provisio | 94.7 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 94.01 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.71 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 93.63 | |
| PRK13901 | 196 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.6 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 93.53 | |
| PRK14602 | 203 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.51 | |
| PRK14600 | 186 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.49 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 93.48 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.4 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 93.0 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 92.96 | |
| PF06514 | 93 | PsbU: Photosystem II 12 kDa extrinsic protein (Psb | 92.9 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 92.83 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 92.72 | |
| TIGR00594 | 1022 | polc DNA-directed DNA polymerase III (polc). This | 92.56 | |
| PRK14605 | 194 | ruvA Holliday junction DNA helicase RuvA; Provisio | 92.53 | |
| PRK07135 | 973 | dnaE DNA polymerase III DnaE; Validated | 92.5 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 92.33 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 92.14 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 91.98 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 91.97 | |
| COG0632 | 201 | RuvA Holliday junction resolvasome, DNA-binding su | 91.82 | |
| PRK00448 | 1437 | polC DNA polymerase III PolC; Validated | 91.7 | |
| KOG2534 | 353 | consensus DNA polymerase IV (family X) [Replicatio | 91.35 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.14 | |
| PRK06620 | 214 | hypothetical protein; Validated | 90.27 | |
| smart00483 | 334 | POLXc DNA polymerase X family. includes vertebrate | 90.14 | |
| PRK13901 | 196 | ruvA Holliday junction DNA helicase RuvA; Provisio | 89.96 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 89.56 | |
| PF11731 | 93 | Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd | 89.2 | |
| PRK14605 | 194 | ruvA Holliday junction DNA helicase RuvA; Provisio | 89.15 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 88.67 | |
| PRK14604 | 195 | ruvA Holliday junction DNA helicase RuvA; Provisio | 88.43 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 88.29 | |
| PRK12377 | 248 | putative replication protein; Provisional | 88.25 | |
| PRK14603 | 197 | ruvA Holliday junction DNA helicase RuvA; Provisio | 88.0 | |
| TIGR00084 | 191 | ruvA Holliday junction DNA helicase, RuvA subunit. | 87.61 | |
| PRK09087 | 226 | hypothetical protein; Validated | 87.49 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 87.16 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 87.06 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 86.76 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 86.39 | |
| PRK08116 | 268 | hypothetical protein; Validated | 86.01 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 86.0 | |
| PF02371 | 87 | Transposase_20: Transposase IS116/IS110/IS902 fami | 85.92 | |
| PRK05898 | 971 | dnaE DNA polymerase III DnaE; Validated | 85.6 | |
| PF03934 | 280 | T2SK: Type II secretion system (T2SS), protein K; | 85.53 | |
| PF14716 | 68 | HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU | 85.4 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 85.4 | |
| PRK06526 | 254 | transposase; Provisional | 85.39 | |
| PRK14602 | 203 | ruvA Holliday junction DNA helicase RuvA; Provisio | 85.39 | |
| TIGR00084 | 191 | ruvA Holliday junction DNA helicase, RuvA subunit. | 85.08 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 84.7 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 84.43 | |
| TIGR00608 | 218 | radc DNA repair protein radc. This family is based | 84.27 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 84.25 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 83.5 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 82.57 | |
| PRK10702 | 211 | endonuclease III; Provisional | 82.42 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 82.22 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 81.84 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 81.73 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 81.32 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 81.2 | |
| PRK08727 | 233 | hypothetical protein; Validated | 80.88 | |
| KOG2841 | 254 | consensus Structure-specific endonuclease ERCC1-XP | 80.7 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 80.67 | |
| PRK08181 | 269 | transposase; Validated | 80.57 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 80.37 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 80.03 |
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-79 Score=696.27 Aligned_cols=349 Identities=28% Similarity=0.431 Sum_probs=312.7
Q ss_pred CCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHHHHhc
Q 035971 14 KKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVFN 93 (614)
Q Consensus 14 ~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~~vl~ 93 (614)
.||+|+|||||+++.|......+.|.-. + ....|.|.-......-.+.|+||+||+|++.|.+||+.+|.|+|+.|+.
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~-~-~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCD-G-IRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecC-C-CcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999888777766543 2 1455666655333335789999999999999999999999999999999
Q ss_pred CCceEEEeeccCCCCcceEeec--------CCCCcchhHHHHHHHHhhccc--cCceEEEEEEEEecceeccccCcccc-
Q 035971 94 GINATIVACGAKGSGKTRVIQG--------SYEEPGLAALAVDEILSISEK--MGKSITISFYEIFQDHVYDLLDPKQQ- 162 (614)
Q Consensus 94 G~N~tI~aYGqTGSGKTyTm~G--------~~~~~GLipral~~LF~~~~~--~~~sV~vS~~EIYnE~V~DLL~~~~~- 162 (614)
|||||||||||||+||||||.| .++++|||||++.+||+.++. ..|+|.|||+|+|||.++|||++...
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCcccc
Confidence 9999999999999999999999 467899999999999999884 56999999999999999999988643
Q ss_pred --cceEEec-----CCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC------c
Q 035971 163 --EVQILEN-----GQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN------F 229 (614)
Q Consensus 163 --~l~i~ed-----~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~------~ 229 (614)
.+.+.++ ..||++|+||.++.|.++.|++.+|.+|..+|++++|.+|+.|||||+||+|+|+.... .
T Consensus 207 ~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geel 286 (1041)
T KOG0243|consen 207 DKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEEL 286 (1041)
T ss_pred ccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhh
Confidence 3444444 47899999999999999999999999999999999999999999999999999977655 3
Q ss_pred cccceeEEEeCCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEE
Q 035971 230 LPTGKMNFVDLAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTC 309 (614)
Q Consensus 230 ~~~skL~fVDLAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~ 309 (614)
...|||+||||||||...++|+.+.|.+|+..||+||++||+||.||.++..|||||+|||||||||||||.++|+||||
T Consensus 287 vK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIAT 366 (1041)
T KOG0243|consen 287 VKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIAT 366 (1041)
T ss_pred HhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcC------chhHHHHHHhHhhhhhcCCCccccccccccchHHHHHHHHHHHHHHHHhhhhh
Q 035971 310 LLPR------SVSTTKTQTGSQMHSSTKKATGVASVVKGRYSLKFSVQVRKLFDEAIQSTKSE 366 (614)
Q Consensus 310 vsP~------Tl~TL~~asr~~r~i~nk~~~~~~~~~k~~~~~~~~~q~~~L~~e~~~~~~~~ 366 (614)
|||+ |++||+||.|+ +.|+|||-.|.. ..|+...-+|..+|.+|+.++..+..|+
T Consensus 367 iSPa~~~lEETlSTLEYA~RA-KnIkNKPevNQk-l~K~~llKd~~~EIerLK~dl~AaReKn 427 (1041)
T KOG0243|consen 367 ISPAKHNLEETLSTLEYAHRA-KNIKNKPEVNQK-LMKKTLLKDLYEEIERLKRDLAAAREKN 427 (1041)
T ss_pred eCCCcccHHHHHHHHHHHHHh-hhccCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 9999 99999999999 999999876654 4566677788999999999998777664
|
|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A | Back alignment and domain information |
|---|
| >TIGR01259 comE comEA protein | Back alignment and domain information |
|---|
| >TIGR00426 competence protein ComEA helix-hairpin-helix repeat region | Back alignment and domain information |
|---|
| >PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional | Back alignment and domain information |
|---|
| >PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A | Back alignment and domain information |
|---|
| >COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
| >COG2183 Tex Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
| >cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases | Back alignment and domain information |
|---|
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 | Back alignment and domain information |
|---|
| >PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
| >PF06514 PsbU: Photosystem II 12 kDa extrinsic protein (PsbU); InterPro: IPR010527 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae | Back alignment and domain information |
|---|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >TIGR00594 polc DNA-directed DNA polymerase III (polc) | Back alignment and domain information |
|---|
| >PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK07135 dnaE DNA polymerase III DnaE; Validated | Back alignment and domain information |
|---|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
|---|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00448 polC DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >smart00483 POLXc DNA polymerase X family | Back alignment and domain information |
|---|
| >PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] | Back alignment and domain information |
|---|
| >PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA | Back alignment and domain information |
|---|
| >PRK05898 dnaE DNA polymerase III DnaE; Validated | Back alignment and domain information |
|---|
| >PF03934 T2SK: Type II secretion system (T2SS), protein K; InterPro: IPR005628 Members of this family are involved in the general secretion pathway | Back alignment and domain information |
|---|
| >PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >TIGR00608 radc DNA repair protein radc | Back alignment and domain information |
|---|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK10702 endonuclease III; Provisional | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG2841 consensus Structure-specific endonuclease ERCC1-XPF, ERCC1 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 614 | ||||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-41 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 6e-35 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 9e-30 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 6e-29 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 7e-29 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 7e-29 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 1e-28 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-28 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 2e-28 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 3e-28 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 6e-28 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 1e-27 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 2e-27 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 5e-27 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 5e-27 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 2e-26 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 2e-26 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 2e-26 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 2e-26 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 2e-26 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 2e-26 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 2e-26 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 3e-26 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 3e-26 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 1e-25 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 1e-24 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 9e-24 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 2e-23 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 4e-23 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 1e-22 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 2e-22 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 5e-22 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 1e-21 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 2e-21 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 2e-21 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 2e-21 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 1e-20 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 7e-20 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 9e-20 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 1e-18 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-18 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-18 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-18 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-18 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 1e-17 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-17 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 7e-16 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 9e-16 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-15 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-15 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 7e-15 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 7e-15 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-14 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-14 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-14 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-10 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 2e-06 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 7e-06 |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
|
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 3e-55
Identities = 99/312 (31%), Positives = 165/312 (52%), Gaps = 17/312 (5%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
RV ++R F D A +++ C++ G DS S+ ++ + Y+ D Y +
Sbjct: 24 RVAVRLRPFVDGTAGASDPPCVR---GMDSCSLEIANWRNHQETLK-YQFDAFYGERSTQ 79
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK 136
I+A V+P++ + G NA+++A G G+GKT + GS E+PG+ A+ ++L ++ +
Sbjct: 80 QDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTRE 139
Query: 137 MGK-------SITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISE 189
G S+T+S+ EI+Q+ V DLLDP ++ I E+ +G I + GLSQ P+ S ++
Sbjct: 140 EGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFAD 199
Query: 190 FQKLYISMHNSRKPVQKITM-DLPRRSHKGLIVNV----SPVSNFLPTGKMNFVDLAGYQ 244
F++ + + V + RSH L+V V GK+ +DLAG +
Sbjct: 200 FERH-FLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSE 258
Query: 245 DIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKI 304
D RR +G E+ +N S++ L VV ALN VPYR+SKLTR+LQ+SLG +
Sbjct: 259 DNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHS 318
Query: 305 LMLTCLLPRSVS 316
+++ + P
Sbjct: 319 ILIANIAPERRF 330
|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Length = 98 | Back alignment and structure |
|---|
| >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Length = 75 | Back alignment and structure |
|---|
| >1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} Length = 134 | Back alignment and structure |
|---|
| >3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* Length = 97 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.93 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.88 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.84 | |
| 1s5l_U | 134 | Photosystem II 12 kDa extrinsic protein; photosynt | 98.98 | |
| 3arc_U | 97 | Photosystem II 12 kDa extrinsic protein; PSII, mem | 98.91 | |
| 2i5h_A | 205 | Hypothetical protein AF1531; PFAM:DUF655, PSI-2, s | 98.91 | |
| 2edu_A | 98 | Kinesin-like protein KIF22; kinesin-like DNA bindi | 98.91 | |
| 2duy_A | 75 | Competence protein comea-related protein; helix-ha | 98.69 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 98.29 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 97.73 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 97.6 | |
| 2bcq_A | 335 | DNA polymerase lambda; misalignment, extrahelical, | 96.93 | |
| 2fmp_A | 335 | DNA polymerase beta; nucleotidyl transferase, tran | 96.14 | |
| 2ihm_A | 360 | POL MU, DNA polymerase MU; helix-turn-helix, trans | 96.07 | |
| 3ci0_K | 298 | Pseudopilin GSPK; general secretory pathway, pseud | 95.32 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 95.31 | |
| 1vq8_Y | 241 | 50S ribosomal protein L32E; ribosome 50S, protein- | 95.25 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 94.97 | |
| 1jms_A | 381 | Terminal deoxynucleotidyltransferase; polymerase; | 94.95 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 94.34 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 94.14 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 93.44 | |
| 2hnh_A | 910 | DNA polymerase III alpha subunit; DNA replication, | 93.36 | |
| 2ztd_A | 212 | Holliday junction ATP-dependent DNA helicase RUVA; | 93.34 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 93.29 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 93.22 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 93.12 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 93.07 | |
| 2w9m_A | 578 | Polymerase X; SAXS, DNA repair, DNA polymerase, DN | 92.84 | |
| 3f2b_A | 1041 | DNA-directed DNA polymerase III alpha chain; DNA p | 92.82 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 92.45 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 92.4 | |
| 1cuk_A | 203 | RUVA protein; DNA repair, SOS response, DNA-bindin | 92.33 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 92.02 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 91.45 | |
| 2ztd_A | 212 | Holliday junction ATP-dependent DNA helicase RUVA; | 91.44 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 91.11 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 90.82 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 90.37 | |
| 1cuk_A | 203 | RUVA protein; DNA repair, SOS response, DNA-bindin | 89.96 | |
| 3c65_A | 226 | Uvrabc system protein C; UVRC, endonuclease, nucle | 89.46 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 88.84 | |
| 2fmp_A | 335 | DNA polymerase beta; nucleotidyl transferase, tran | 86.82 | |
| 2bgw_A | 219 | XPF endonuclease; hydrolase, structure specific en | 85.82 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 85.05 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 84.49 | |
| 4gkp_A | 275 | Spindle POLE BODY-associated protein VIK1; kinesin | 83.48 | |
| 2duy_A | 75 | Competence protein comea-related protein; helix-ha | 83.17 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 82.55 | |
| 1jms_A | 381 | Terminal deoxynucleotidyltransferase; polymerase; | 81.96 | |
| 2ihm_A | 360 | POL MU, DNA polymerase MU; helix-turn-helix, trans | 81.59 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 81.34 | |
| 3b0x_A | 575 | DNA polymerase beta family (X family); structural | 81.27 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 81.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 80.55 |
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-81 Score=668.30 Aligned_cols=321 Identities=26% Similarity=0.422 Sum_probs=290.7
Q ss_pred CCCCCCeEEEEEeCCCCChhhccCCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHH
Q 035971 10 LNISKKARVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLIS 89 (614)
Q Consensus 10 ~~~~~~VrV~vRvRP~~~~e~~~~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~ 89 (614)
++++++|+|+||+||+.+.|...+.++.+... + .+++..... .+..+.|.||+||+++++|++||+. +.|+|+
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~---~--~~~v~~~~~-~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~ 73 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSV---D--EFTVEHLWK-DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQ 73 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEEC---S--SSEEEEECT-TSCEEEEECSEEECTTCCHHHHHHT-TTHHHH
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcC---C--cEEEEecCC-CCCceEEecCEEECCCCCcceehhh-hhhhhH
Confidence 46889999999999999998877666666432 2 224433221 2356899999999999999999998 799999
Q ss_pred HHhcCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc----cCceEEEEEEEEecceeccccCccc---c
Q 035971 90 EVFNGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK----MGKSITISFYEIFQDHVYDLLDPKQ---Q 162 (614)
Q Consensus 90 ~vl~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~sV~vS~~EIYnE~V~DLL~~~~---~ 162 (614)
++++|||+||||||||||||||||+|+..++||+||++++||+.++. ..+.|++||+|||||+|+|||++.. .
T Consensus 74 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 153 (369)
T 3cob_A 74 SAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRL 153 (369)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCC
T ss_pred hhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCc
Confidence 99999999999999999999999999999999999999999998874 4689999999999999999998753 5
Q ss_pred cceEEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---ccccceeEEEe
Q 035971 163 EVQILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---FLPTGKMNFVD 239 (614)
Q Consensus 163 ~l~i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~~~~skL~fVD 239 (614)
.+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|++.+.+. ....|+|+|||
T Consensus 154 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 233 (369)
T 3cob_A 154 KLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVD 233 (369)
T ss_dssp CCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred ceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999987654 34579999999
Q ss_pred CCCccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC------
Q 035971 240 LAGYQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR------ 313 (614)
Q Consensus 240 LAGsEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~------ 313 (614)
||||||..++++.|.+++|+..||+||++|++||.+|+.++.||||||||||+||||+|||||+|+||+||||+
T Consensus 234 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~E 313 (369)
T 3cob_A 234 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDE 313 (369)
T ss_dssp CCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHH
T ss_pred CCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhHhhhhhcCCCccccc
Q 035971 314 SVSTTKTQTGSQMHSSTKKATGVAS 338 (614)
Q Consensus 314 Tl~TL~~asr~~r~i~nk~~~~~~~ 338 (614)
|++||+||+|+ +.|+|++..|...
T Consensus 314 Tl~TLrfA~ra-k~i~~~~~~n~~~ 337 (369)
T 3cob_A 314 THNSLTYASRV-RSIVNDPSKNVSS 337 (369)
T ss_dssp HHHHHHHHHHH-HTCBCCCCCCEEC
T ss_pred HHHHHHHHHHH-hhcccCCcccCCH
Confidence 99999999999 9999999877654
|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
| >3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* | Back alignment and structure |
|---|
| >2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1 | Back alignment and structure |
|---|
| >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... | Back alignment and structure |
|---|
| >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... | Back alignment and structure |
|---|
| >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6 | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* | Back alignment and structure |
|---|
| >2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A | Back alignment and structure |
|---|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
| >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A | Back alignment and structure |
|---|
| >3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... | Back alignment and structure |
|---|
| >2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
| >4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A | Back alignment and structure |
|---|
| >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* | Back alignment and structure |
|---|
| >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 614 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 4e-43 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 2e-39 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 3e-39 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 4e-36 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 5e-35 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 1e-33 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 4e-33 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 6e-33 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 8e-33 | |
| d2edua1 | 91 | a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human | 4e-08 | |
| d2duya1 | 65 | a.60.2.7 (A:11-75) Uncharacterized protein TTHA196 | 4e-08 | |
| d3bzka1 | 90 | a.60.2.6 (A:474-563) Transcriptional accessory fac | 3e-07 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 155 bits (392), Expect = 4e-43
Identities = 83/314 (26%), Positives = 146/314 (46%), Gaps = 21/314 (6%)
Query: 17 RVIAKIRGFADLEAESANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGN 76
+V+ + R + E + + + TV +P Y D ++ +
Sbjct: 8 KVMCRFRPLNESEVNRGDKYIAKFQGED-----TVVIASKP------YAFDRVFQSSTSQ 56
Query: 77 GIIFAREVKPLISEVFNGINATIVACGAKGSGKTRVIQGS---YEEPGLAALAVDE---- 129
++ K ++ +V G N TI A G SGKT ++G E G+ V +
Sbjct: 57 EQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNY 116
Query: 130 ILSISEKMGKSITISFYEIFQDHVYDLLDPKQQEVQILENGQGKIQLKGLSQVPVKSISE 189
I S+ E + I +S++EI+ D + DLLD + + + E+ +KG ++ V S E
Sbjct: 117 IYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDE 176
Query: 190 FQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNV---SPVSNFLPTGKMNFVDLAGYQDI 246
++R + RSH ++NV + + +GK+ VDLAG + +
Sbjct: 177 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 236
Query: 247 RRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILM 306
+ EG++ E +NKS+ L NV+ AL ++VPYR+SK+TR+LQ+SLG + +
Sbjct: 237 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTI 296
Query: 307 LTCLLPRSVSTTKT 320
+ C P S + ++T
Sbjct: 297 VICCSPSSYNESET 310
|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
| >d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Length = 65 | Back information, alignment and structure |
|---|
| >d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Length = 90 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d2edua1 | 91 | KIF22, C-terminal domain {Human (Homo sapiens) [Ta | 99.44 | |
| d3bzka1 | 90 | Transcriptional accessory factor Tex {Pseudomonas | 99.27 | |
| d2duya1 | 65 | Uncharacterized protein TTHA1967 {Thermus thermoph | 99.11 | |
| d2axtu1 | 98 | Photosystem II 12 kDa extrinsic protein PsbU {Ther | 98.94 | |
| d2i5ha1 | 180 | Hypothetical protein AF1531 {Archaeoglobus fulgidu | 97.8 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 96.66 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 96.19 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 96.11 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 96.0 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 95.92 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 95.76 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 95.17 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 95.04 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 94.79 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 94.73 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 94.64 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 94.47 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 94.34 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 94.14 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 93.52 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.24 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 93.06 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 92.87 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 92.79 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 91.96 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 91.79 | |
| d2fmpa1 | 82 | DNA polymerase beta, N-terminal (8 kD)-domain {Hum | 91.04 | |
| d1jmsa1 | 95 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 90.86 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 90.52 | |
| d1dgsa1 | 181 | NAD+-dependent DNA ligase, domain 3 {Thermus filif | 90.24 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 89.59 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.29 | |
| d2bcqa1 | 76 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 88.8 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 88.38 | |
| d1keaa_ | 217 | Thymine-DNA glycosylase {Archaeon Methanobacterium | 87.88 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.26 | |
| d1orna_ | 214 | Endonuclease III {Escherichia coli [TaxId: 562]} | 86.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 85.92 | |
| d1kg2a_ | 224 | Catalytic domain of MutY {Escherichia coli [TaxId: | 85.78 | |
| d1rrqa1 | 221 | Catalytic domain of MutY {Bacillus stearothermophi | 85.73 | |
| d2abka_ | 211 | Endonuclease III {Escherichia coli [TaxId: 562]} | 85.06 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.34 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 83.33 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.42 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 82.24 | |
| d1wg8a1 | 98 | Putative methyltransferase TM0872, insert domain { | 82.23 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 82.2 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.3e-74 Score=616.08 Aligned_cols=313 Identities=27% Similarity=0.425 Sum_probs=273.8
Q ss_pred CeEEEEEeCCCCChhhcc--CCcEEEeCCCCCCCCeEEEEeCCCCCCCceeeEeeeeecCCCChHHHHhhhhHHHHHHHh
Q 035971 15 KARVIAKIRGFADLEAES--ANWVCIQKPNGEDSDSVTVSFGEQPSSRKECYKLDYCYEQNEGNGIIFAREVKPLISEVF 92 (614)
Q Consensus 15 ~VrV~vRvRP~~~~e~~~--~~~v~v~~~~~~d~~~v~v~~~~~~~~~~~~F~FD~VF~~~asQ~eVf~~~v~plV~~vl 92 (614)
+|+|+|||||+.+.|... ..++.+. +...+..... ....+.|.||+||+++++|++||+. +.|+|++++
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~-----~~~~~~~~~~---~~~~~~f~FD~vf~~~~~q~~vy~~-v~~lv~~~l 71 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSV-----DEFTVEHLWK---DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAV 71 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEEC-----STTEEEEECS---SSSEEEEECSEEECTTCCHHHHHHT-TTHHHHHHH
T ss_pred CeEEEEEcCCCChhhcccCCCCeEEeC-----CCCeEEecCC---CCCceEEECCeecCCCCCHHHHHHH-HHHHHHHHh
Confidence 699999999999888655 3344432 2222222222 2356899999999999999999986 689999999
Q ss_pred cCCceEEEeeccCCCCcceEeecCCCCcchhHHHHHHHHhhccc----cCceEEEEEEEEecceeccccCccc---ccce
Q 035971 93 NGINATIVACGAKGSGKTRVIQGSYEEPGLAALAVDEILSISEK----MGKSITISFYEIFQDHVYDLLDPKQ---QEVQ 165 (614)
Q Consensus 93 ~G~N~tI~aYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~sV~vS~~EIYnE~V~DLL~~~~---~~l~ 165 (614)
+|||+||||||||||||||||+|+.+++||+||++++||..+.+ ..+.|++||+|||||+++|||++.. ..+.
T Consensus 72 ~G~n~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~ 151 (364)
T d1sdma_ 72 DGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLD 151 (364)
T ss_dssp TTCEEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCE
T ss_pred cCCceeeeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccc
Confidence 99999999999999999999999999999999999999988763 4578999999999999999998754 3578
Q ss_pred EEecCCCceEecCCeEEEcCCHHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEEEeeccC---ccccceeEEEeCCC
Q 035971 166 ILENGQGKIQLKGLSQVPVKSISEFQKLYISMHNSRKPVQKITMDLPRRSHKGLIVNVSPVSN---FLPTGKMNFVDLAG 242 (614)
Q Consensus 166 i~ed~~~~~~v~gLtev~V~S~ee~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~I~v~~~~~---~~~~skL~fVDLAG 242 (614)
+++++.++++|.|++++.|.+++|++.++..|..+|++++|.+|..|||||+||++++.+... ....++|+||||||
T Consensus 152 ~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAG 231 (364)
T d1sdma_ 152 IKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAG 231 (364)
T ss_dssp EEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCC
T ss_pred eeecccCccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCcceeeeEEEEeechhh
Confidence 999999999999999999999999999999999999999999999999999999999987655 45679999999999
Q ss_pred ccccccccCccchhhhhHHhhhhHHHHHHHHHHHhcCCCCccCCCChhhhhhhhccCCCceEEEEEEcCcC------chh
Q 035971 243 YQDIRRKSTEGSIFVENTKVNKSIYTLFNVVYALNANESHVPYRESKLTRMLQESLGCKSKILMLTCLLPR------SVS 316 (614)
Q Consensus 243 sEr~~k~~~~g~~l~E~~~INkSL~aL~~vI~aL~~~~~~vPyRdSkLTrLLqdsLgGnskt~mI~~vsP~------Tl~ 316 (614)
+||..++++.|.+++|+..||+||.+|++||.+|+++..|||||+||||+||+|+|||||+|+|||||||+ |++
T Consensus 232 sEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~ 311 (364)
T d1sdma_ 232 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHN 311 (364)
T ss_dssp CSCCCC---------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHH
T ss_pred ccccccccccCceeeeccccccchhhHHHHHHHHHcCCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHhHhhhhhcCCCcccc
Q 035971 317 TTKTQTGSQMHSSTKKATGVA 337 (614)
Q Consensus 317 TL~~asr~~r~i~nk~~~~~~ 337 (614)
||+||+++ +.|+|+|+.|..
T Consensus 312 TL~fa~~a-k~i~n~p~~n~~ 331 (364)
T d1sdma_ 312 SLTYASRV-RSIVNDPSKNVS 331 (364)
T ss_dssp HHHHHHHH-TTCCCCCCCCEE
T ss_pred HHHHHHHH-hhcccCCcccCC
Confidence 99999999 999999987754
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} | Back information, alignment and structure |
|---|
| >d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|