Citrus Sinensis ID: 035976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCGITTIQ
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHcccccccccccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccEEEEEEEccccccccccccccccccccHHHccccHcccEEEccccccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccEEEEcccccccccc
Coil and Loop (DISEMBL)
mhgykcclQKERIGLLALKSFFISISDTEYAEEILTswvdddgmssdcsndwdgvkcnaTTRRVMHLLLNDtakfnfsynslfgvslmnfslfhpfeelqsLDLSLNAFEGFyenraydsngslkQLKILNLeanhfndsiLPYLNTLISLTTLILRenniegsrtieglsnlrnlQLLDLRLANltnlktldlrdcgittiq
Flexible Loop (DISEMBL)
MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLAnltnlktldlrdcgittiq
Low Complexity Region (SEG)
MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYlntlislttlilRENNIEGSRTIEGlsnlrnlqlldlrlanltnlKTLDLRDCGITTIQ
Disordered region (IsUnstruct)
***YKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCGIT***
Disordered Region (DISOPRED)
****KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCGIT***
Disordered Region (DISEMBL)
MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCGITTIQ
Disordered Region (DISPRO)
**GYKCCLQKERIGLLALKSFFISISD***AEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCGI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCGITTIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9C9N5	685	Probable inactive leucine	no	no	0.798	0.236	0.358	9e-09
Q0WR59	1048	Probable inactive recepto	no	no	0.788	0.152	0.307	5e-08
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.650	0.121	0.279	2e-05
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.640	0.125	0.295	3e-05
Q9LHP4	1141	Receptor-like protein kin	no	no	0.389	0.069	0.416	0.0001
Q00874	372	DNA-damage-repair/tolerat	no	no	0.837	0.456	0.262	0.0002
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.438	0.090	0.382	0.0003
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.482	0.095	0.36	0.0004
Q9SCT4	836	Probably inactive leucine	no	no	0.463	0.112	0.363	0.0004
Q9LRT1	1016	Probably inactive leucine	no	no	0.596	0.119	0.330	0.0005

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 84/184 (45%), Gaps = 22/184 (11%)

Query: 16  LALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLND--TA 73
           LAL SF  SI +   ++ + T+W   D  S+ CS  W GV CN   R V   L N   + 
Sbjct: 27  LALLSFKQSIQNQ--SDSVFTNWNSSD--SNPCS--WQGVTCNYDMRVVSIRLPNKRLSG 80

Query: 74  KFNFSYNSLFGVSLMN-----FSLFHPFE-----ELQSLDLSLNAFEGFYENRAYDSNGS 123
             + S  SL  +  +N     F    P E      LQSL LS N+F GF         GS
Sbjct: 81  SLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEI----GS 136

Query: 124 LKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL 183
           LK L  L+L  N FN SI   L     L TL+L +N+  G       SNL +L+ L+L  
Sbjct: 137 LKSLMTLDLSENSFNGSISLSLIPCKKLKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLSF 196

Query: 184 ANLT 187
             LT
Sbjct: 197 NRLT 200

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 77/182 (42%), Gaps = 22/182 (12%)

Query: 2   HGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMS--SDCSNDWDGVKCNA 59
           HG     + E   L +L  F   I D    + I  SW D   ++  S C NDW G+ C+ 
Sbjct: 17  HGANAVTETE---LRSLLEFRKGIRDETSHQRI--SWSDTSSLTDPSTCPNDWPGISCDP 71

Query: 60  TTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD 119
            T  ++ +        N     L G   + FS       L++L LS N+F G    R   
Sbjct: 72  ETGSIIAI--------NLDRRGLSGE--LKFSTLSGLTRLRNLSLSGNSFSG----RVVP 117

Query: 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLL 179
           S G +  L+ L+L  N F   I   ++ L SL  L L  N  EG     G  NL+ L+ L
Sbjct: 118 SLGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFP-SGFRNLQQLRSL 176

Query: 180 DL 181
           DL
Sbjct: 177 DL 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 22/154 (14%)

Query: 33  EILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSL 92
           E+ ++W ++   ++ C+N+W GV C+ +   V  L L+ +           G+S    S 
Sbjct: 47  EVASTWKENTSETTPCNNNWFGVICDLSGNVVETLNLSAS-----------GLSGQLGSE 95

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
               + L +LDLSLN+F G   +      G+   L+ L+L  N F+  +     +L +LT
Sbjct: 96  IGELKSLVTLDLSLNSFSGLLPSTL----GNCTSLEYLDLSNNDFSGEVPDIFGSLQNLT 151

Query: 153 TLILRENNIEG--SRTIEGLSNLRNLQLLDLRLA 184
            L L  NN+ G    ++ GL     ++L+DLR++
Sbjct: 152 FLYLDRNNLSGLIPASVGGL-----IELVDLRMS 180

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 19/149 (12%)

Query: 34  ILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSL-MNFSL 92
           +L SW D+    + C + W+G+ CN     V  ++L++            G++   +FSL
Sbjct: 27  VLNSWNDESIDFNGCPSSWNGIVCNGGN--VAGVVLDN-----------LGLTADADFSL 73

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
           F    +L  L +S N+  G   N      GS K L+ L+L  N F+ S+   +   +SL 
Sbjct: 74  FSNLTKLVKLSMSNNSLSGVLPNDL----GSFKSLQFLDLSDNLFSSSLPKEIGRSVSLR 129

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDL 181
            L L  NN  G    E +  L +LQ LD+
Sbjct: 130 NLSLSGNNFSG-EIPESMGGLISLQSLDM 157

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 98  ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR 157
           ELQ +DLS N+ EG   N       SL  L++L++ AN F+  I   L  L+SL  LIL 
Sbjct: 515 ELQMIDLSNNSLEGSLPNPV----SSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILS 570

Query: 158 ENNIEGSRTIEGLSNLRNLQLLDL 181
           +N   GS     L     LQLLDL
Sbjct: 571 KNLFSGSIPTS-LGMCSGLQLLDL 593

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 32/202 (15%)

Query: 5   KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRV 64
           +CC  K++  L A KS   S+S+      I  +W ++    +DC  +W G+ C+  + RV
Sbjct: 25  RCCSPKDQTALNAFKS---SLSEPNLG--IFNTWSEN----TDCCKEWYGISCDPDSGRV 75

Query: 65  MHLLL---NDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSL-DLSLNAFEGFYENRAYDS 120
             + L   ++ A F  +  S +    M+ S+     +L +L  L L  ++G         
Sbjct: 76  TDISLRGESEDAIFQKAGRSGY----MSGSIDPAVCDLTALTSLVLADWKGIT-GEIPPC 130

Query: 121 NGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLD 180
             SL  L+IL+L  N     I   +  L  L  L L EN + G               + 
Sbjct: 131 ITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGE--------------IP 176

Query: 181 LRLANLTNLKTLDLRDCGITTI 202
             L +L  LK L+L + GIT +
Sbjct: 177 ASLTSLIELKHLELTENGITGV 198

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 102 LDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNI 161
           LD+S N   G       DS G+L QL+ L L  NH + ++   L   I+L  L L  NN+
Sbjct: 374 LDVSRNNLSGSIP----DSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNL 429

Query: 162 EGSRTIEGLSNLRNLQL-LDLRLANLTNLKTLDL 194
            G+  +E +SNLRNL+L L+L   +L+    L+L
Sbjct: 430 TGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLEL 463

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 89  NFSLFHPFEELQSLDLSLNAFEG-FYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNT 147
           NFS F P +   +  L +  F G ++E     S  +LK LK L L  N+F   +   +  
Sbjct: 160 NFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGE 219

Query: 148 LISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLT 187
           L SL T+IL  N   G    E    L  LQ LDL + NLT
Sbjct: 220 LSSLETIILGYNGFMG-EIPEEFGKLTRLQYLDLAVGNLT 258

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
              LQSLD S N+  G       DS  +L  L  LNLE+NH    I   ++ L +LT L 
Sbjct: 286 LPHLQSLDFSYNSINGTIP----DSFSNLSSLVSLNLESNHLKGPIPDAIDRLHNLTELN 341

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDL 194
           L+ N I G    E + N+  ++ LDL   N T    L L
Sbjct: 342 LKRNKINGP-IPETIGNISGIKKLDLSENNFTGPIPLSL 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 21/142 (14%)

Query: 35  LTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLND---TAKFNFSYNSLFGVSLM--- 88
           L SW +DD  ++ CS  W  VKCN  T RV+ L L+    T K N     L  + ++   
Sbjct: 54  LESWTEDD--NTPCS--WSYVKCNPKTSRVIELSLDGLALTGKINRGIQKLQRLKVLSLS 109

Query: 89  ------NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL 142
                 N +       LQ LDLS N   G    +   S GS+  L+ L+L  N F+ ++ 
Sbjct: 110 NNNFTGNINALSNNNHLQKLDLSHNNLSG----QIPSSLGSITSLQHLDLTGNSFSGTLS 165

Query: 143 PYL-NTLISLTTLILRENNIEG 163
             L N   SL  L L  N++EG
Sbjct: 166 DDLFNNCSSLRYLSLSHNHLEG 187

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
297745031	869	unnamed protein product [Vitis vinifera]	0.945	0.220	0.428	6e-32
297821945	910	leucine-rich repeat family protein [Arab	0.901	0.201	0.427	8e-31
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.931	0.177	0.432	2e-30
240254535	935	receptor like protein 21 [Arabidopsis th	0.901	0.195	0.427	2e-30
4432858	910	putative disease resistance protein [Ara	0.901	0.201	0.427	2e-30
10177158	888	disease resistance protein-like [Arabido	0.896	0.204	0.418	5e-30
240256417	908	receptor like protein 56 [Arabidopsis th	0.921	0.205	0.408	7e-30
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.960	0.170	0.394	6e-29
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.921	0.182	0.409	6e-28
359482735	1097	PREDICTED: receptor-like protein 12-like	0.911	0.168	0.420	2e-27

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 129/217 (59%), Gaps = 25/217 (11%)

Query: 1   MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
           +HGYKCCL+KER+GLL  K F  S  + E A+ +L SWV+D+   SDC   W+ V CN+T
Sbjct: 19  IHGYKCCLEKERMGLLEFKRFLRS--NNEDADRLLPSWVNDE--ESDCCY-WERVVCNST 73

Query: 61  TRRVMHLLLNDTAKFNFSYNSLFGVS------LMNFSLFHPFEELQSLDLSLNAFEGFYE 114
           T  V  L LN+  +  F Y+ ++G++       +N SLFHPFEEL SLDLS N F    E
Sbjct: 74  TGTVTQLSLNNIRQIEF-YHRVYGLAPPKKTWFLNVSLFHPFEELVSLDLSENWFADSLE 132

Query: 115 NRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR 174
           ++ ++    LK+L++LN+  N+FN+SI P +  L SL  LILRE  +EGS       N  
Sbjct: 133 DQGFEKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEGSYLDRVPFN-- 190

Query: 175 NLQLLDLR-----------LANLTNLKTLDLRDCGIT 200
           NL++LDL            + NLT+L+ L L D  +T
Sbjct: 191 NLEVLDLSNNRFTGSIPPYIWNLTSLQALSLADNQLT 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 121/208 (58%), Gaps = 25/208 (12%)

Query: 1   MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
           +HG K C+ KER  LL LK + +S S     + +L +W +D    SDC   WDG+KCN T
Sbjct: 7   LHGCKGCIMKEREALLELKKYLMSRSRESGLDYVLPTWTND--TKSDCC-QWDGIKCNRT 63

Query: 61  TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLS---LNAFEGFYEN-R 116
           +RRV+ L + D   F  S       S +N SL HPFEE++SL+LS    N F GF+++  
Sbjct: 64  SRRVIGLSVGDMY-FKES-------SPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVE 115

Query: 117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176
            Y S   L+ L+I++L  N+FN SI P+LN   SLTT+ L  N ++G   I+GL +L NL
Sbjct: 116 GYRSLSRLRNLQIMDLSTNYFNYSIFPFLNAATSLTTIFLTYNEMDGPFPIKGLKDLTNL 175

Query: 177 QLLDLR----------LANLTNLKTLDL 194
           +LLDLR          L NL NL+ L L
Sbjct: 176 ELLDLRANKLKGSMQELKNLINLEVLGL 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 123/199 (61%), Gaps = 10/199 (5%)

Query: 3   GYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTR 62
           G K C+++E++GLL  K+F     + E+A+ +L SW+D++  +S+C N W+ V CN TT 
Sbjct: 22  GCKGCIEEEKMGLLEFKAFLKL--NNEHADFLLPSWIDNN--TSECCN-WERVICNPTTG 76

Query: 63  RVMHLLLNDTAKF----NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAY 118
           RV  L  ND  +     N+ Y       L+N SLF PFEEL  L+LS N+F+GF EN  +
Sbjct: 77  RVKKLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGF 136

Query: 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178
            S   LK+L+ILNL  N FN +I+  L+ L SL TL++  N IEG    +  ++L NL++
Sbjct: 137 KSLSKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIEGLFPSQDFASLNNLEI 196

Query: 179 LDLR-LANLTNLKTLDLRD 196
           LDL   A+L NL+ LDL D
Sbjct: 197 LDLSDFASLNNLEILDLSD 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254535|ref|NP_180117.4| receptor like protein 21 [Arabidopsis thaliana] gi|330252611|gb|AEC07705.1| receptor like protein 21 [Arabidopsis thaliana]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 120/208 (57%), Gaps = 25/208 (12%)

Query: 1   MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
           +HG   C++KER  LL LK + +S S     + +L +W +D    SDC   WDG+KCN T
Sbjct: 7   LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND--TKSDCC-QWDGIKCNRT 63

Query: 61  TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLS---LNAFEGFYEN-R 116
           + RV+ L + D   F  S       S +N SL HPFEE++SL+LS    N F GF+++  
Sbjct: 64  SGRVIELSVGDMY-FKES-------SPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVE 115

Query: 117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176
            Y S   L+ LKI++L  N+FN S  P+LN   SLTTLIL  N ++G   I+GL +L NL
Sbjct: 116 GYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNL 175

Query: 177 QLLDLR----------LANLTNLKTLDL 194
           +LLDLR          L +L  LK LDL
Sbjct: 176 ELLDLRANKLNGSMQELIHLKKLKALDL 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 120/208 (57%), Gaps = 25/208 (12%)

Query: 1   MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
           +HG   C++KER  LL LK + +S S     + +L +W +D    SDC   WDG+KCN T
Sbjct: 7   LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND--TKSDCC-QWDGIKCNRT 63

Query: 61  TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLS---LNAFEGFYEN-R 116
           + RV+ L + D   F  S       S +N SL HPFEE++SL+LS    N F GF+++  
Sbjct: 64  SGRVIELSVGDMY-FKES-------SPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVE 115

Query: 117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176
            Y S   L+ LKI++L  N+FN S  P+LN   SLTTLIL  N ++G   I+GL +L NL
Sbjct: 116 GYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNL 175

Query: 177 QLLDLR----------LANLTNLKTLDL 194
           +LLDLR          L NL NL+ L L
Sbjct: 176 ELLDLRANKLNGSMQELQNLINLEVLGL 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 119/208 (57%), Gaps = 26/208 (12%)

Query: 1   MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
           +HG+  C++KER  LL LK F +S  +    + +L +W +D    SDC   W+ +KCN T
Sbjct: 7   LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND--TKSDCC-QWENIKCNRT 63

Query: 61  TRRVMHLLLNDTAKFNFSYNSLF-GVSLMNFSLFHPFEELQSLDLSLNAFEGFYEN-RAY 118
           +RR+  L L         Y S +  +SL+N SL HPFEE++SLDLS +   G  ++   Y
Sbjct: 64  SRRLTGLSL---------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGY 114

Query: 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178
            S   L+ L+ILN  +N FN+SI P+LN   SLTTL LR NN+ G   ++ L NL NL+L
Sbjct: 115 KSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLEL 174

Query: 179 LDLR------------LANLTNLKTLDL 194
           LDL             L NLTNL+ L L
Sbjct: 175 LDLSGNRIDGSMPVRGLKNLTNLEVLSL 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 26/213 (12%)

Query: 1   MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
           +HG+  C++KER  LL LK F +S  +    + +L +W +D    SDC   W+ +KCN T
Sbjct: 7   LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTND--TKSDCC-QWENIKCNRT 63

Query: 61  TRRVMHLLLNDTAKFNFSYNSLF-GVSLMNFSLFHPFEELQSLDLSLNAFEGFYEN-RAY 118
           +RR+  L L         Y S +  +SL+N SL HPFEE++SLDLS +   G  ++   Y
Sbjct: 64  SRRLTGLSL---------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGY 114

Query: 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178
            S   L+ L+ILN  +N FN+SI P+LN   SLTTL LR NN+ G   ++ L NL NL+L
Sbjct: 115 KSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLEL 174

Query: 179 LDL------------RLANLTNLKTLDLRDCGI 199
           LDL                L  LK LDL   GI
Sbjct: 175 LDLSGNRIDGSMPVREFPYLKKLKALDLSSNGI 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 127/218 (58%), Gaps = 23/218 (10%)

Query: 3   GYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTR 62
           G K C+++E++GLL  K+F     + E+A+ +L SW+D++  +S+C N W+ V CN TT 
Sbjct: 22  GCKGCIEEEKMGLLEFKAFLKL--NNEHADFLLPSWIDNN--TSECCN-WERVICNPTTG 76

Query: 63  RVMHLLLNDTAKF------NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENR 116
           RV  L  ND  +       N+ Y       L+N SLF PFEEL  L+LS N+F+GF EN 
Sbjct: 77  RVKKLFFNDITRQQNFLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 136

Query: 117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176
            ++   SLK+L+IL++  N F+ S L  L T+ SL TL +    + GS +I  L++LRNL
Sbjct: 137 GFEGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICRMGLNGSFSIRELASLRNL 196

Query: 177 QLLDLR------------LANLTNLKTLDLRDCGITTI 202
           ++LDL              A+L+NL+ LDL    I+ I
Sbjct: 197 EVLDLSYNDLESFQLLQDFASLSNLEVLDLSANSISGI 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/210 (40%), Positives = 126/210 (60%), Gaps = 23/210 (10%)

Query: 3   GYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTR 62
           G K C+++E++GLL  K+F     + E+A+ +L SW+D++  +S+C N W+ V CN TT 
Sbjct: 22  GCKGCIKEEKMGLLEFKAFLKL--NNEHADFLLPSWIDNN--TSECCN-WERVICNPTTG 76

Query: 63  RVMHLLLND-TAKFNFSYNSLFGVS-----LMNFSLFHPFEELQSLDLSLNAFEGFYENR 116
           RV  L LND T + NF  +  +        L+N SLF PFEEL  L+LS N+F+GF EN 
Sbjct: 77  RVKKLFLNDITRQQNFLEDDWYHYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENE 136

Query: 117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL 176
            +    SLK+L+IL++  N F+ S L  L T+ SL TL +    + GS +I  L++LRNL
Sbjct: 137 GFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLNGSFSIRELASLRNL 196

Query: 177 QLLDLR------------LANLTNLKTLDL 194
           ++LDL              A+L+NL+ LDL
Sbjct: 197 EVLDLSYNDLESFQLLQDFASLSNLELLDL 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/207 (42%), Positives = 123/207 (59%), Gaps = 22/207 (10%)

Query: 5   KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRV 64
           K C+++E++GLL  K+F + ++D E+A+ +L SW+D++  +S+C N W+ V CN TT +V
Sbjct: 24  KGCIEEEKMGLLEFKAF-LKLND-EHADFLLPSWLDNN--TSECCN-WERVICNPTTGQV 78

Query: 65  MHLLLNDTAKF------NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAY 118
             L LND  +       N+ Y       L+N SLF PFEEL  L+LS N+F+GF EN  +
Sbjct: 79  KKLFLNDIRQQQNFLEDNWYYYENAKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGF 138

Query: 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178
            S   LK+L+ILNL  N FN +I+  L+ L SL TL++  N IEG    +G   L  LQ 
Sbjct: 139 KSLSKLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYIEGLFPSQGFCQLNKLQE 198

Query: 179 LDLR-----------LANLTNLKTLDL 194
           LDL            L NLT+L+ LDL
Sbjct: 199 LDLSYNLFQGILPPCLNNLTSLRLLDL 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.773	0.160	0.377	1.3e-23
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.738	0.165	0.385	1.9e-23
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.778	0.168	0.369	8.2e-22
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.738	0.155	0.369	1e-20
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.704	0.132	0.343	6.8e-12
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.586	0.133	0.320	2.1e-10
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.492	0.1	0.304	7e-08
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.600	0.127	0.335	1e-05
TAIR|locus:2033379	685	AT1G66830 [Arabidopsis thalian	0.571	0.169	0.369	1.8e-05
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.591	0.166	0.297	0.00082

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 65/172 (37%), Positives = 97/172 (56%)

Query:     1 MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
             + GYKCC++KER  LL LK + IS +     + +L +W +D    S+C   W+G+KCN T
Sbjct:    21 LRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDT--KSNCCR-WEGLKCNQT 77

Query:    61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLS---LNAFEGFYEN-R 116
             + R++ L +  T   NF  +SL     +N SL HPFEEL+SL+LS    N F G +++  
Sbjct:    78 SGRIIELSIGQT---NFKESSL-----LNLSLLHPFEELRSLNLSGEIYNEFNGLFDDVE 129

Query:   117 AYDSNGSLKQLKILNLEANHFNDSILPYXXXXXXXXXXXXRENNIEGSRTIE 168
              Y+S   L+ L+IL+L +N FN+SI P+            + N I G   I+
Sbjct:   130 GYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIK 181

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 64/166 (38%), Positives = 92/166 (55%)

Query:     1 MHGYKCCLQKERIGLLALKSFFIS-ISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNA 59
             +HG+  C++KER  LL LK F +S   + EY + +L +W +D    SDC   W+ +KCN 
Sbjct:     7 LHGFSSCIEKERKALLELKKFVMSRCEECEY-DSVLPTWTNDT--KSDCCQ-WENIKCNR 62

Query:    60 TTRRVMHLLLNDTAKFNFSYNSLF-GVSLMNFSLFHPFEELQSLDLSLNAFEGFYEN-RA 117
             T+RR+  L L         Y S +  +SL+N SL HPFEE++SLDLS +   G  ++   
Sbjct:    63 TSRRLTGLSL---------YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEG 113

Query:   118 YDSNGSLKQLKILNLEANHFNDSILPYXXXXXXXXXXXXRENNIEG 163
             Y S   L+ L+ILN  +N FN+SI P+            R NN+ G
Sbjct:   114 YKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYG 159

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 8.2e-22, P = 8.2e-22
 Identities = 64/173 (36%), Positives = 92/173 (53%)

Query:     1 MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
             +HG   C++KER  LL LK + +S S     + +L +W +D    SDC   WDG+KCN T
Sbjct:     7 LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDT--KSDCCQ-WDGIKCNRT 63

Query:    61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSL---NAFEGFYEN-R 116
             + RV+ L + D   F  S       S +N SL HPFEE++SL+LS    N F GF+++  
Sbjct:    64 SGRVIELSVGDMY-FKES-------SPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVE 115

Query:   117 AYDSNGSLKQLKILNLEANHFNDSILPYXXXXXXXXXXXXRENNIEGSRTIEG 169
              Y S   L+ LKI++L  N+FN S  P+              N ++G   I+G
Sbjct:   116 GYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKG 168

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 61/165 (36%), Positives = 92/165 (55%)

Query:     1 MHGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNAT 60
             +HGYK C+ +E+I L  L+   IS   TE +E +L +W +D   +SDC   W GV CN  
Sbjct:    21 LHGYKSCIDEEKIALFELRKHMIS--RTE-SESVLPTWTNDT--TSDCCR-WKGVACNRV 74

Query:    61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYEN-RAYD 119
             + RV  +        +F   SL   SL+N SL HPFE+++SL+LS +   G +++   Y 
Sbjct:    75 SGRVTEI--------SFGGLSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYK 126

Query:   120 SNGSLKQLKILNLEANHFNDSILPYXXXXXXXXXXXXRENNIEGS 164
             S   L++L+IL+L +N FN+SI  +            R NN++GS
Sbjct:   127 SLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGS 171

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 54/157 (34%), Positives = 77/157 (49%)

Query:    13 IGLLALKSFFISISDTEYAEE----ILTSWVDDDGMSSDCSNDWDGVKCN-ATTRRVMHL 67
             +GLL LKS+  ++ D E  EE    IL SW   +G   DC   W+ VKC+ A    V+ L
Sbjct:     1 MGLLQLKSYLKNLVDAEEEEEEGLSILKSWTHHEG---DCCR-WERVKCSDAINGHVIGL 56

Query:    68 LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYEN-RAYDSNGSLKQ 126
              L+      F   +    SL N SL H F +LQSL+LS N F    ++   + S G+L +
Sbjct:    57 SLDRLVPVAFESQTR---SL-NLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTLDK 112

Query:   127 LKILNLEANHFNDSILPYXXXXXXXXXXXXRENNIEG 163
             L  L+   N F++SI+P+              N +EG
Sbjct:   113 LTTLDFSHNMFDNSIVPFLNAATSIRSLHLESNYMEG 149

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 41/128 (32%), Positives = 68/128 (53%)

Query:    44 MSSD--CSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQS 101
             MSSD  C + W  +KC+ T++RV+ + L+       S      +  +N + F+PFEELQS
Sbjct:     1 MSSDRSCCH-WRRIKCDITSKRVIGISLSLE-----SIRPPDPLPQLNLTFFYPFEELQS 54

Query:   102 LDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDSILPYXXXXXXXXXXXXRENN 160
             L+LS   F+G+++ R      GSL+ L+ L+L  N ++ S+LPY             +N 
Sbjct:    55 LNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNL 114

Query:   161 IEGSRTIE 168
              +G   ++
Sbjct:   115 FKGGFPVQ 122

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 35/115 (30%), Positives = 57/115 (49%)

Query:    54 GVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLN------ 107
             GV+CN  + R+ ++         F    +    L+N SL HPFE+++SLDLS +      
Sbjct:     2 GVECNRKSGRITNIA--------FGIGFIIENPLLNLSLLHPFEDVRSLDLSSSRSCEDC 53

Query:   108 AFEGFYEN-RAYDSNGSLKQLKILNLEANHFNDSILPYXXXXXXXXXXXXRENNI 161
              F G +++   Y S   L+ L+IL+L ++ FN+SI P+              NN+
Sbjct:    54 GFSGLFDDVEGYKSLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNM 108

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 47/140 (33%), Positives = 69/140 (49%)

Query:     7 CLQKERIGLLALKSFF-ISISDTEYAEEI-LTS--WVDDDGMSSDCSNDWDGVKCNATTR 62
             C  ++R  LLA K+ F I     ++ +   + S    D  G +SDC N W+GV CNA + 
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSDCCN-WEGVTCNAKSG 95

Query:    63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG 122
              V+ L        + S +SL G    N S+ +    L +LDLS N F+G    +   S  
Sbjct:    96 EVIEL--------DLSCSSLHGRFHSNSSIRN-LHFLTTLDLSFNDFKG----QITSSIE 142

Query:   123 SLKQLKILNLEANHFNDSIL 142
             +L  L  L+L +NHF+  IL
Sbjct:   143 NLSHLTYLDLSSNHFSGQIL 162

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2033379 AT1G66830 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 51/138 (36%), Positives = 64/138 (46%)

Query:    16 LALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLND--TA 73
             LAL SF  SI +   ++ + T+W   D  S+ CS  W GV CN   R V   L N   + 
Sbjct:    27 LALLSFKQSIQNQ--SDSVFTNWNSSD--SNPCS--WQGVTCNYDMRVVSIRLPNKRLSG 80

Query:    74 KFNFSYNSLFGVSLMNF--SLFH---PFE-----ELQSLDLSLNAFEGFYENRAYDSNGS 123
               + S  SL  +  +N   + F    P E      LQSL LS N+F GF         GS
Sbjct:    81 SLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEI----GS 136

Query:   124 LKQLKILNLEANHFNDSI 141
             LK L  L+L  N FN SI
Sbjct:   137 LKSLMTLDLSENSFNGSI 154

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 0.00082, Sum P(2) = 0.00082
 Identities = 41/138 (29%), Positives = 63/138 (45%)

Query:     2 HGYKCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATT 61
             H    C Q ++  LL  K+ F  + +      +     +    ++DC + WDG+ C+  T
Sbjct:    24 HVKHLCRQDQKNALLEFKNEFY-VHEFNSNGIVGVKKTEKWRNNTDCCS-WDGISCDPKT 81

Query:    62 RRVMHL-LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDS 120
              +V+ L L+N        Y+S         SLF   + L +LDL  N F G       DS
Sbjct:    82 GKVVELDLMNSFLNGPLRYDS---------SLFR-LQHLHNLDLGSNNFSGILP----DS 127

Query:   121 NGSLKQLKILNL-EANHF 137
              GSLK L++L+L + N F
Sbjct:   128 IGSLKYLRVLSLGDCNLF 145

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030803001 SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (268 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L++LDLS N   G       +  GS   LK+L+L  N     I   L  L SL  L L  
Sbjct: 142 LETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLRLANLT 187
           N + G    E L  +++L+ + L   NL+
Sbjct: 198 NQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
              LQS++LS N+  G        S GS+  L++L+L  N FN SI   L  L SL  L 
Sbjct: 441 LRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 156 LRENNIEG 163
           L  N++ G
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 98  ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR 157
            LQ L L+ N F G       DS GS K+L+ L+L  N F+ ++   L +L  L  L L 
Sbjct: 453 SLQMLSLARNKFFGGLP----DSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 158 ENNIEGSRTIEGLSNLRNLQLLDLRLANLT 187
           EN + G    E LS+ + L  LDL    L+
Sbjct: 508 ENKLSGEIPDE-LSSCKKLVSLDLSHNQLS 536

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN03150	623	hypothetical protein; Provisional	99.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.42
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.39
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.27
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.13
PLN03150	623	hypothetical protein; Provisional	99.11
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.07
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.93
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.86
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.66
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.6
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.5
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.46
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.02
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.72
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.63
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.57
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.94
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.65
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.59
PRK15386	426	type III secretion protein GogB; Provisional	95.56
smart00370	26	LRR Leucine-rich repeats, outliers.	95.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.44
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.08
smart00370	26	LRR Leucine-rich repeats, outliers.	94.58
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.58
PRK15386	426	type III secretion protein GogB; Provisional	93.87
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	92.63
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.45
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.88
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.65
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	80.41
KOG1947	482	consensus Leucine rich repeat proteins, some prote	80.29

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=6.6e-21  Score=175.83  Aligned_cols=173  Identities=29%  Similarity=0.426  Sum_probs=123.2

Q ss_pred             ChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCeeEEecCCc---------------
Q 035976            8 LQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDT---------------   72 (203)
Q Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~---------------   72 (203)
                      ++.|+.+|++||+++.     +|. ..+.+|..  .  .+|| .|.||.|+. .++|+.|+++++               
T Consensus        27 ~~~~~~~l~~~~~~~~-----~~~-~~~~~w~~--~--~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~   94 (968)
T PLN00113         27 HAEELELLLSFKSSIN-----DPL-KYLSNWNS--S--ADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPY   94 (968)
T ss_pred             CHHHHHHHHHHHHhCC-----CCc-ccCCCCCC--C--CCCC-cCcceecCC-CCcEEEEEecCCCccccCChHHhCCCC
Confidence            6789999999999997     676 46889976  3  5899 999999986 568999999887               


Q ss_pred             -cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCC
Q 035976           73 -AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISL  151 (203)
Q Consensus        73 -~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  151 (203)
                       +.|+++++.+.+.  ++...+..+++|++|++++|.+++.+|.      ..+++|++|++++|.+++..|..+..+++|
T Consensus        95 L~~L~Ls~n~~~~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         95 IQTINLSNNQLSGP--IPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             CCEEECCCCccCCc--CChHHhccCCCCCEEECcCCccccccCc------cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence             1222333322221  1222333555666666666665554443      346677777777777777777778888888


Q ss_pred             cEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       152 ~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      +.|++++|.+.+.+|. .+.++++|++|+++           ++.+++|+.|+|++|++++
T Consensus       167 ~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        167 KVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            8888888888776775 77888888888886           5677788888888888764

>PLN03150 hypothetical protein; Provisional

Probab=99.68  E-value=5.3e-16  Score=137.00  Aligned_cols=149  Identities=27%  Similarity=0.318  Sum_probs=120.0

Q ss_pred             ccCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCC---CCCCccccCCC--C--CCeeEEecCCcccccc
Q 035976            5 KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCS---NDWDGVKCNAT--T--RRVMHLLLNDTAKFNF   77 (203)
Q Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c---~~w~gv~c~~~--~--~~v~~l~l~~~~~l~l   77 (203)
                      ..+.+.|.+||+.+|+++.     ++.   ..+|.+     ++||   ..|.||.|...  .  ..|+.|+|+++   .+
T Consensus       367 ~~t~~~~~~aL~~~k~~~~-----~~~---~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n---~L  430 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLG-----LPL---RFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ---GL  430 (623)
T ss_pred             cccCchHHHHHHHHHHhcC-----Ccc---cCCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCC---Cc
Confidence            3467789999999999986     432   247976     3442   16999999531  1  24888888888   66


Q ss_pred             ccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEecc
Q 035976           78 SYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR  157 (203)
Q Consensus        78 ~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  157 (203)
                      .+.        .+..+..+++|+.|+|++|.+.+.+|.    .+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus       431 ~g~--------ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        431 RGF--------IPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             ccc--------CCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            654        367889999999999999999998998    89999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhhCCC-CCCcEEEEe
Q 035976          158 ENNIEGSRTIEGLSNL-RNLQLLDLR  182 (203)
Q Consensus       158 ~N~l~~~lp~~~~~~l-~~L~~L~l~  182 (203)
                      +|++++.+|. .+..+ .++..+++.
T Consensus       499 ~N~l~g~iP~-~l~~~~~~~~~l~~~  523 (623)
T PLN03150        499 GNSLSGRVPA-ALGGRLLHRASFNFT  523 (623)
T ss_pred             CCcccccCCh-HHhhccccCceEEec
Confidence            9999998986 55543 345555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.48  E-value=2e-13  Score=126.37  Aligned_cols=106  Identities=32%  Similarity=0.364  Sum_probs=63.0

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..+..+++|++|++++|.+.+.+|.    .+.++++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|. .
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~  231 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-E  231 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-h
Confidence            44456666666666666666655565    556666666666666666655666666666666666666666654553 5


Q ss_pred             hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCC
Q 035976          170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~  200 (203)
                      +..+++|++|+++           ++.+++|+.|+|++|+++
T Consensus       232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            5666666666554           344455555555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.42  E-value=4.1e-15  Score=108.95  Aligned_cols=124  Identities=28%  Similarity=0.390  Sum_probs=85.5

Q ss_pred             CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976           61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS  140 (203)
Q Consensus        61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~  140 (203)
                      ...++++.|+++   .+...         ++.+..+.+|+.|++.+|+++. +|.    .++.+++|+.|+++.|++. .
T Consensus        32 ~s~ITrLtLSHN---Kl~~v---------ppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~-~   93 (264)
T KOG0617|consen   32 MSNITRLTLSHN---KLTVV---------PPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLN-I   93 (264)
T ss_pred             hhhhhhhhcccC---ceeec---------CCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhh-c
Confidence            456778888887   55443         5677778888888888888887 676    7777888888888877777 6


Q ss_pred             ChhhhcCCCCCcEEeccCCCCCC-C-----------------------cchhhhCCCCCCcEEEEe----------cCCC
Q 035976          141 ILPYLNTLISLTTLILRENNIEG-S-----------------------RTIEGLSNLRNLQLLDLR----------LANL  186 (203)
Q Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~-~-----------------------lp~~~~~~l~~L~~L~l~----------~~~l  186 (203)
                      .|..|+.++.|+.|||.+|++.. .                       +|+ .++++.+|+.|.+.          ++.+
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpkeig~l  172 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPKEIGDL  172 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcHHHHHH
Confidence            77778888888888777777764 2                       333 34555555555554          4555


Q ss_pred             CCCCEEEccCCCCCcCC
Q 035976          187 TNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       187 ~~L~~L~L~~N~l~~ip  203 (203)
                      +.|++|++.+|+++-+|
T Consensus       173 t~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  173 TRLRELHIQGNRLTVLP  189 (264)
T ss_pred             HHHHHHhcccceeeecC
Confidence            56666666666665554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.39  E-value=3.8e-14  Score=120.30  Aligned_cols=109  Identities=28%  Similarity=0.323  Sum_probs=67.1

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      .+.+.+|+.|+.|+|++|.+...-++    .+...++|++|+|++|+++...+..|..+..|+.|+|+.|+++. +....
T Consensus       286 ~g~lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~a  360 (873)
T KOG4194|consen  286 EGWLFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGA  360 (873)
T ss_pred             cccccccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhH
Confidence            44555666666666666666664444    55566667777777777765555666666666666666666655 44445


Q ss_pred             hCCCCCCcEEEEe--------------cCCCCCCCEEEccCCCCCcCC
Q 035976          170 LSNLRNLQLLDLR--------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       170 ~~~l~~L~~L~l~--------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      |..+++|+.|||+              |..+++|+.|+|.+|+|..||
T Consensus       361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence            6666666666665              555666666666666555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.27  E-value=7.5e-14  Score=102.36  Aligned_cols=86  Identities=26%  Similarity=0.357  Sum_probs=60.9

Q ss_pred             CccCCCCCCCCEEEccCCcCCCc-ccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGF-YENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      |..|+.++.|++|||.+|.+... +|.    .|..++.|+-|.++.|.+. .+|+.++++++|+.|.+..|.+-. +|. 
T Consensus        95 prgfgs~p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpk-  167 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPK-  167 (264)
T ss_pred             ccccCCCchhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcH-
Confidence            44555555555555555555432 333    4444555555555555555 678889999999999999999987 996 


Q ss_pred             hhCCCCCCcEEEEe
Q 035976          169 GLSNLRNLQLLDLR  182 (203)
Q Consensus       169 ~~~~l~~L~~L~l~  182 (203)
                      .++.+..|++|++.
T Consensus       168 eig~lt~lrelhiq  181 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQ  181 (264)
T ss_pred             HHHHHHHHHHHhcc
Confidence            89999999999886

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.23  E-value=9.6e-12  Score=105.95  Aligned_cols=123  Identities=25%  Similarity=0.290  Sum_probs=80.7

Q ss_pred             eeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChh
Q 035976           64 VMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP  143 (203)
Q Consensus        64 v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  143 (203)
                      +..|+++++   .++..        ++..|.++++|+.+++..|.++. +|.    ......+|+.|+|..|.|+..-.+
T Consensus        80 t~~LdlsnN---kl~~i--------d~~~f~nl~nLq~v~l~~N~Lt~-IP~----f~~~sghl~~L~L~~N~I~sv~se  143 (873)
T KOG4194|consen   80 TQTLDLSNN---KLSHI--------DFEFFYNLPNLQEVNLNKNELTR-IPR----FGHESGHLEKLDLRHNLISSVTSE  143 (873)
T ss_pred             eeeeecccc---ccccC--------cHHHHhcCCcceeeeeccchhhh-ccc----ccccccceeEEeeeccccccccHH
Confidence            445666666   55443        46677788888888888888887 675    333444577777777777665566


Q ss_pred             hhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          144 YLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       144 ~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+.-++.|+.|||+.|.|+. +|...|..-.++++|+|+           |..+.+|..|.|+.|+|+.+|
T Consensus       144 ~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  144 ELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             HHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence            66666777777777777766 655455555666666666           555566666666666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=3.9e-11  Score=89.54  Aligned_cols=91  Identities=36%  Similarity=0.487  Sum_probs=39.5

Q ss_pred             CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhh-cCCCCCcEEeccCCCCCCCcc-hhhhCC
Q 035976           95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL-NTLISLTTLILRENNIEGSRT-IEGLSN  172 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~lp-~~~~~~  172 (203)
                      .+.+|+.|++++|.++. ++     .+..++.|++|++++|.++. +++.+ ..+++|+.|++++|+|.. +. ...+..
T Consensus        40 ~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~~L~~  111 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISD-LNELEPLSS  111 (175)
T ss_dssp             T-TT--EEE-TTS--S---T-----T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---S-CCCCGGGGG
T ss_pred             hhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCC-hHHhHHHHc
Confidence            46788889999998887 44     56678888999999998884 43444 467888899999888875 22 124556


Q ss_pred             CCCCcEEEEe--------------cCCCCCCCEEE
Q 035976          173 LRNLQLLDLR--------------LANLTNLKTLD  193 (203)
Q Consensus       173 l~~L~~L~l~--------------~~~l~~L~~L~  193 (203)
                      +++|++|++.              +..+|+|+.||
T Consensus       112 l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  112 LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            7777777775              55666666665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.13  E-value=5.3e-12  Score=103.28  Aligned_cols=105  Identities=36%  Similarity=0.466  Sum_probs=94.7

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      .+..++.+++|+.|+|++|.+.. +|.    +++.+..||.|+++.|+|. .+|..+..+..++.+-.++|++.. ++++
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~----e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~-vd~~  499 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLND-LPE----EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS-VDPS  499 (565)
T ss_pred             chHHHHhhhcceeeecccchhhh-cch----hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc-cChH
Confidence            46678889999999999999998 888    8889999999999999998 788888888888888888899988 8876


Q ss_pred             hhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCC
Q 035976          169 GLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       169 ~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~  200 (203)
                      .+..+.+|..||+.          ++++++|++|+|.+|.|+
T Consensus       500 ~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            78999999999998          899999999999999997

>PLN03150 hypothetical protein; Provisional

Probab=99.11  E-value=2.7e-10  Score=100.97  Aligned_cols=96  Identities=29%  Similarity=0.459  Sum_probs=84.9

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ  177 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~  177 (203)
                      .++.|+|++|.+.+.+|.    .+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|. .++.+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence            478899999999999998    999999999999999999999999999999999999999999998886 899999999


Q ss_pred             EEEEe-----------cCC-CCCCCEEEccCCC
Q 035976          178 LLDLR-----------LAN-LTNLKTLDLRDCG  198 (203)
Q Consensus       178 ~L~l~-----------~~~-l~~L~~L~L~~N~  198 (203)
                      +|+|+           +.. ..++..+++.+|.
T Consensus       494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            99997           111 2345678888886

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.10  E-value=1.3e-11  Score=100.70  Aligned_cols=100  Identities=26%  Similarity=0.296  Sum_probs=60.7

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccC-CCCCCCC
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA-NHFNDSI  141 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~-n~l~~~~  141 (203)
                      ..+.|.|..|   .++.        +++..|..+++|+.|||+.|.|+.+.|.    .|.+++.|..|-+.+ |+|+...
T Consensus        68 ~tveirLdqN---~I~~--------iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   68 ETVEIRLDQN---QISS--------IPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             cceEEEeccC---Cccc--------CChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhh
Confidence            3456666655   4433        3678888888899999999888886676    777777766665544 7777443


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcE
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL  178 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~  178 (203)
                      -..|.++..|+.|.+.-|++.- ++.+.|..+++|..
T Consensus       133 k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~l  168 (498)
T KOG4237|consen  133 KGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSL  168 (498)
T ss_pred             hhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcch
Confidence            3445555555555555444443 33334444444433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=1.1e-10  Score=87.10  Aligned_cols=100  Identities=33%  Similarity=0.428  Sum_probs=39.7

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccC-CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh-
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNG-SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL-  170 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~-  170 (203)
                      +.+..++++|+|.+|.++. +.     .++ .+.+|+.|++++|.++. + +.+..++.|+.|++++|+++. ++. .+ 
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-Ie-----~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~-~l~   84 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-IE-----NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISE-GLD   84 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CH-HHH
T ss_pred             ccccccccccccccccccc-cc-----chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-ccc-chH
Confidence            3445578999999999987 43     454 57899999999999983 3 468889999999999999998 764 34 


Q ss_pred             CCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976          171 SNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       171 ~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      ..+++|++|+++            +..+++|+.|+|.+|.++.-
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            468999999998            67889999999999998753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.07  E-value=3.3e-12  Score=109.72  Aligned_cols=106  Identities=24%  Similarity=0.349  Sum_probs=85.5

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCC--CCcch
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIE--GSRTI  167 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~lp~  167 (203)
                      |..+.++++|+.|+|++|.++. +..    ......+|++|++++|+++ .+|..+.++++|+.|.+.+|+++  | ||.
T Consensus       238 Pecly~l~~LrrLNLS~N~ite-L~~----~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG-iPS  310 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITE-LNM----TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG-IPS  310 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceee-eec----cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC-Ccc
Confidence            7788888999999999999887 443    4556778888999999998 78888888999999999888765  6 886


Q ss_pred             hhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          168 EGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       168 ~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                       .++++.+|+++..+          +.++..|+.|.|+.|++-.+|
T Consensus       311 -GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP  355 (1255)
T KOG0444|consen  311 -GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP  355 (1255)
T ss_pred             -chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeech
Confidence             78888888887766          677778888888888776554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.05  E-value=2.8e-11  Score=104.19  Aligned_cols=85  Identities=27%  Similarity=0.255  Sum_probs=53.7

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh-hhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL-PYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      |..+..+..|+.|||+.|++.. +|.    .+..-+++-+|+|++|+|. .+| +.|.++..|-+|||++|++.. +|+ 
T Consensus        96 P~diF~l~dLt~lDLShNqL~E-vP~----~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPP-  167 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQLRE-VPT----NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPP-  167 (1255)
T ss_pred             Cchhcccccceeeecchhhhhh-cch----hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCH-
Confidence            5556667777777777777776 666    6666666777777777776 344 344566666667777776665 665 


Q ss_pred             hhCCCCCCcEEEEe
Q 035976          169 GLSNLRNLQLLDLR  182 (203)
Q Consensus       169 ~~~~l~~L~~L~l~  182 (203)
                      .+..+..|+.|.|+
T Consensus       168 Q~RRL~~LqtL~Ls  181 (1255)
T KOG0444|consen  168 QIRRLSMLQTLKLS  181 (1255)
T ss_pred             HHHHHhhhhhhhcC
Confidence            44444444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=4.1e-10  Score=69.56  Aligned_cols=61  Identities=31%  Similarity=0.355  Sum_probs=42.9

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNI  161 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (203)
                      ++|++|++++|+++...+.    .|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677777777777763333    666777777777777777755556677777777777777764

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=8.9e-11  Score=93.22  Aligned_cols=103  Identities=30%  Similarity=0.341  Sum_probs=76.8

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL  170 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~  170 (203)
                      ....-++.++.|+++.|.+.. +.     ++..+++|+.|||++|.++ .+-.+-..+-+.+.|.|+.|.+.. +.  .+
T Consensus       301 ESvKL~Pkir~L~lS~N~i~~-v~-----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-LS--GL  370 (490)
T KOG1259|consen  301 ESVKLAPKLRRLILSQNRIRT-VQ-----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-LS--GL  370 (490)
T ss_pred             hhhhhccceeEEeccccceee-eh-----hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-hh--hh
Confidence            445556778888888888775 32     5667788888888888877 344444567777788888888776 53  57


Q ss_pred             CCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976          171 SNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       171 ~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .++.+|..||++            ++++|.|+++.|.+|.+.++|
T Consensus       371 ~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  371 RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            788888888887            888899999999999888765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.93  E-value=1.8e-10  Score=102.41  Aligned_cols=101  Identities=30%  Similarity=0.393  Sum_probs=85.3

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      .+.+.++++|+.|+|++|++.. +|+   ..+.++..|+.|+|++|+++ .+|..+..+..|++|...+|++.. +|  .
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~-fpa---s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP--e  447 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNS-FPA---SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP--E  447 (1081)
T ss_pred             hhhhccccceeeeeeccccccc-CCH---HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch--h
Confidence            3557788999999999999887 565   26778889999999999999 788999999999999999999987 88  5


Q ss_pred             hCCCCCCcEEEEe----------c-CCCCCCCEEEccCCC
Q 035976          170 LSNLRNLQLLDLR----------L-ANLTNLKTLDLRDCG  198 (203)
Q Consensus       170 ~~~l~~L~~L~l~----------~-~~l~~L~~L~L~~N~  198 (203)
                      +..+++|+++|++          . -..++|++|||++|.
T Consensus       448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            8999999999998          1 222789999999996

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.90  E-value=3.9e-08  Score=88.60  Aligned_cols=93  Identities=26%  Similarity=0.290  Sum_probs=59.8

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL  176 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L  176 (203)
                      +.|+.|++++|.++. +|.    .+.  ++|++|++++|+++ .+|..+.  .+|+.|++++|.++. +|. .+.  .+|
T Consensus       199 ~~L~~L~Ls~N~Lts-LP~----~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~-~l~--s~L  264 (754)
T PRK15370        199 EQITTLILDNNELKS-LPE----NLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPE-RLP--SAL  264 (754)
T ss_pred             cCCcEEEecCCCCCc-CCh----hhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CCh-hHh--CCC
Confidence            357788888888776 565    432  47788888888777 4555442  357777777777775 664 332  367


Q ss_pred             cEEEEe---cCC-----CCCCCEEEccCCCCCcCC
Q 035976          177 QLLDLR---LAN-----LTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       177 ~~L~l~---~~~-----l~~L~~L~L~~N~l~~ip  203 (203)
                      +.|+++   +..     .++|+.|+|++|+|+++|
T Consensus       265 ~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP  299 (754)
T PRK15370        265 QSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLP  299 (754)
T ss_pred             CEEECcCCccCccccccCCCCcEEECCCCccccCc
Confidence            777776   221     135777777777777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.86  E-value=2.8e-11  Score=99.07  Aligned_cols=100  Identities=31%  Similarity=0.409  Sum_probs=53.8

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN  175 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~  175 (203)
                      ++.|+++|...|-++. +|+    +++.+.+|.-|++.+|++. .+| .|.++..|..++++.|+++- +|......+++
T Consensus       182 m~~L~~ld~~~N~L~t-lP~----~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~  253 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLET-LPP----ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNS  253 (565)
T ss_pred             HHHHHhcccchhhhhc-CCh----hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhccccc
Confidence            5555555555555554 455    5555555555555555555 343 45555555555555555554 55433335555


Q ss_pred             CcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          176 LQLLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       176 L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +.+||+.          ...+++|..||+++|.|+++|
T Consensus       254 l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp  291 (565)
T KOG0472|consen  254 LLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP  291 (565)
T ss_pred             ceeeeccccccccCchHHHHhhhhhhhcccCCccccCC
Confidence            5555555          334445556666666665554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.79  E-value=6.4e-09  Score=59.51  Aligned_cols=42  Identities=33%  Similarity=0.692  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccC
Q 035976            9 QKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCN   58 (203)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~   58 (203)
                      ++|++||++||+++..    +|. ..+.+|..+..  .+|| .|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~----~~~-~~l~~W~~~~~--~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNN----DPS-GVLSSWNPSSD--SDPC-SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-----SC--CCCTT--TT----S-CC-CSTTEEE-
T ss_pred             cHHHHHHHHHHHhccc----ccC-cccccCCCcCC--CCCe-eeccEEeC
Confidence            6899999999999983    454 58999998532  4899 99999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.78  E-value=3.9e-10  Score=92.22  Aligned_cols=100  Identities=28%  Similarity=0.313  Sum_probs=87.4

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccC-CCCCCCcchhhhCCCCCC
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE-NNIEGSRTIEGLSNLRNL  176 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~lp~~~~~~l~~L  176 (203)
                      ..+.++|..|+|+. +|+.   .|+.+++|+.|||+.|+|+...|+.|.++++|..|-+.+ |+|+. +|.+.|.++..|
T Consensus        68 ~tveirLdqN~I~~-iP~~---aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISS-IPPG---AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCccc-CChh---hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHH
Confidence            56789999999999 5552   888999999999999999999999999999988777766 99999 999999999999


Q ss_pred             cEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          177 QLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       177 ~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +.|.+.           +..+++|..|.+-+|.+..|
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i  179 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI  179 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh
Confidence            999887           77788888888888877655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.74  E-value=5.9e-09  Score=84.69  Aligned_cols=85  Identities=27%  Similarity=0.312  Sum_probs=35.4

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCC----cchh
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGS----RTIE  168 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----lp~~  168 (203)
                      ++|+.|++++|.+++.........+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++.    ++. 
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-
Confidence            44455555555544211110011233344555555555555421    122233334555555555555431    111 


Q ss_pred             hhCCCCCCcEEEEe
Q 035976          169 GLSNLRNLQLLDLR  182 (203)
Q Consensus       169 ~~~~l~~L~~L~l~  182 (203)
                      .+..+++|++|+++
T Consensus       216 ~~~~~~~L~~L~ls  229 (319)
T cd00116         216 TLASLKSLEVLNLG  229 (319)
T ss_pred             HhcccCCCCEEecC
Confidence            23344555555555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=5.3e-09  Score=64.50  Aligned_cols=55  Identities=33%  Similarity=0.419  Sum_probs=43.5

Q ss_pred             CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEE
Q 035976          125 KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLD  180 (203)
Q Consensus       125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~  180 (203)
                      ++|++|++++|+++...+..|..+++|+.|++++|+++. +++..|..+++|++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~   55 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLD   55 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEE
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEe
Confidence            578999999999996656788999999999999999987 7765655555444443

...

>PLN03210 Resistant to P

Probab=98.73  E-value=9.1e-08  Score=90.51  Aligned_cols=107  Identities=21%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..+..+++|+.|+|+++.....+|     .+..+++|+.|++++|.....+|..+..+++|+.|+++++..-..+|. .
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~  700 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-G  700 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-c
Confidence            3455678888888888775444455     567788888888888766667888888888899999988643333775 3


Q ss_pred             hCCCCCCcEEEEe----c----CCCCCCCEEEccCCCCCcCC
Q 035976          170 LSNLRNLQLLDLR----L----ANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       170 ~~~l~~L~~L~l~----~----~~l~~L~~L~L~~N~l~~ip  203 (203)
                      + ++++|+.|+++    +    ...++|+.|+|++|.|+.+|
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFP  741 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccc
Confidence            3 67888888876    1    22347888899988887765

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.66  E-value=4.5e-08  Score=88.16  Aligned_cols=51  Identities=27%  Similarity=0.365  Sum_probs=25.8

Q ss_pred             CCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---cC-----CCCCCCEEEccCCCCCcCC
Q 035976          149 ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---LA-----NLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       149 ~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---~~-----~l~~L~~L~L~~N~l~~ip  203 (203)
                      ++|+.|++++|.++. +|. .+.  ++|+.|+++   +.     -.++|+.|+|++|+|+.+|
T Consensus       325 ~sL~~L~Ls~N~Lt~-LP~-~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP  383 (754)
T PRK15370        325 PGLKTLEAGENALTS-LPA-SLP--PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLP  383 (754)
T ss_pred             ccceeccccCCcccc-CCh-hhc--CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCC
Confidence            345555555555554 443 221  455666655   11     1235666666666665554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.66  E-value=3.4e-09  Score=94.50  Aligned_cols=117  Identities=26%  Similarity=0.263  Sum_probs=94.0

Q ss_pred             CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976           61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS  140 (203)
Q Consensus        61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~  140 (203)
                      ..++.-|+|++|   +|...        +...+.+++.|+.|+|++|+++. +|.    .+..++.|++|...+|++. .
T Consensus       382 ~~hLKVLhLsyN---rL~~f--------pas~~~kle~LeeL~LSGNkL~~-Lp~----tva~~~~L~tL~ahsN~l~-~  444 (1081)
T KOG0618|consen  382 FKHLKVLHLSYN---RLNSF--------PASKLRKLEELEELNLSGNKLTT-LPD----TVANLGRLHTLRAHSNQLL-S  444 (1081)
T ss_pred             ccceeeeeeccc---ccccC--------CHHHHhchHHhHHHhcccchhhh-hhH----HHHhhhhhHHHhhcCCcee-e
Confidence            446777888887   66543        56788999999999999999998 888    8999999999999999998 5


Q ss_pred             ChhhhcCCCCCcEEeccCCCCCCC-cchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCC
Q 035976          141 ILPYLNTLISLTTLILRENNIEGS-RTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDC  197 (203)
Q Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~-lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N  197 (203)
                      .| .+..+++|+.+|++.|+++.. +|  ....-++|++||++           +..+.++..+++.-|
T Consensus       445 fP-e~~~l~qL~~lDlS~N~L~~~~l~--~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  445 FP-ELAQLPQLKVLDLSCNNLSEVTLP--EALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ch-hhhhcCcceEEecccchhhhhhhh--hhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            67 889999999999999999862 33  22233899999998           555566666666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.66  E-value=4.6e-09  Score=83.63  Aligned_cols=98  Identities=30%  Similarity=0.290  Sum_probs=82.2

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN  175 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~  175 (203)
                      -..|+++||+.|.++. +..    +..-.|.++.|+++.|.+.  ....+..+++|+.|||++|.++. +.- .-.++.+
T Consensus       283 Wq~LtelDLS~N~I~~-iDE----SvKL~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls~-~~G-wh~KLGN  353 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDE----SVKLAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLAE-CVG-WHLKLGN  353 (490)
T ss_pred             Hhhhhhccccccchhh-hhh----hhhhccceeEEecccccee--eehhhhhcccceEeecccchhHh-hhh-hHhhhcC
Confidence            4578999999999988 665    7777899999999999998  33458899999999999999987 553 5678889


Q ss_pred             CcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          176 LQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       176 L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      .+.|.|+         +..+-+|..||+++|+|..+
T Consensus       354 IKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~l  389 (490)
T KOG1259|consen  354 IKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEEL  389 (490)
T ss_pred             EeeeehhhhhHhhhhhhHhhhhheeccccccchhhH
Confidence            9999888         67777899999999998653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.65  E-value=1.7e-08  Score=81.96  Aligned_cols=110  Identities=25%  Similarity=0.261  Sum_probs=78.3

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC----hhhhcCCCCCcEEeccCCCCCCCcc
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI----LPYLNTLISLTTLILRENNIEGSRT  166 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~lp  166 (203)
                      ..+..+++|++|++++|.+++.........+..+++|++|++++|.+++..    +..+..+++|+.|++++|.+++...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            345667889999999999885311111114556789999999999987543    3445678899999999999885111


Q ss_pred             hhhhC-----CCCCCcEEEEe---------------cCCCCCCCEEEccCCCCCc
Q 035976          167 IEGLS-----NLRNLQLLDLR---------------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       167 ~~~~~-----~l~~L~~L~l~---------------~~~l~~L~~L~L~~N~l~~  201 (203)
                      . .+.     ..+.|++|+++               +..+++|+.+++++|.++.
T Consensus       239 ~-~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         239 A-ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             H-HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            1 221     24789999987               4455789999999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.65  E-value=1.5e-07  Score=84.82  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=18.0

Q ss_pred             CCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcc
Q 035976          127 LKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRT  166 (203)
Q Consensus       127 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp  166 (203)
                      |+.|++++|+++ .+|.   ..++|+.|++++|++++ +|
T Consensus       284 L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp  318 (788)
T PRK15387        284 LCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LP  318 (788)
T ss_pred             cCEEECcCCccc-cccc---cccccceeECCCCcccc-CC
Confidence            344444444444 2232   12456667777776665 54

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.64  E-value=1.4e-07  Score=85.04  Aligned_cols=69  Identities=20%  Similarity=0.182  Sum_probs=38.1

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL  176 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L  176 (203)
                      ++|++|++++|+++. +|.    .   .++|+.|++++|.++ .+|..   ...|+.|++++|+++. +|.    .+++|
T Consensus       242 ~~Lk~LdLs~N~Lts-LP~----l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~----~p~~L  304 (788)
T PRK15387        242 PELRTLEVSGNQLTS-LPV----L---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV----LPPGL  304 (788)
T ss_pred             CCCcEEEecCCccCc-ccC----c---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc----ccccc
Confidence            455555555555554 342    1   234555555555554 23331   2456677777777776 653    23567


Q ss_pred             cEEEEe
Q 035976          177 QLLDLR  182 (203)
Q Consensus       177 ~~L~l~  182 (203)
                      +.|+++
T Consensus       305 ~~LdLS  310 (788)
T PRK15387        305 QELSVS  310 (788)
T ss_pred             ceeECC
Confidence            777776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.60  E-value=2.9e-09  Score=90.68  Aligned_cols=104  Identities=28%  Similarity=0.320  Sum_probs=77.2

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..++.+..|+++||+.|+++. +|.    .+..++ |+.|-+++|+++ .+|+.++.+..|..||.+.|.+.. +|. .
T Consensus       114 p~~i~~L~~lt~l~ls~NqlS~-lp~----~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lps-q  184 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSNQLSH-LPD----GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPS-Q  184 (722)
T ss_pred             chhhhhhhHHHHhhhccchhhc-CCh----hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chH-H
Confidence            5667788888889999988887 676    666665 888888888888 688888877888888888888887 776 6


Q ss_pred             hCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          170 LSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ++.+.+|+.|.+.          +..| .|..||++.|+|+.||
T Consensus       185 l~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iP  227 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLP  227 (722)
T ss_pred             hhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecc
Confidence            7777777766665          2222 3566666666666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.50  E-value=9.1e-08  Score=80.39  Aligned_cols=60  Identities=33%  Similarity=0.408  Sum_probs=28.4

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                      +|+.|++++|.+.. +|.    .+..++.|+.|+++.|+++ .+|......+.|+.|++++|+++.
T Consensus       141 nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~  200 (394)
T COG4886         141 NLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD  200 (394)
T ss_pred             hcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc
Confidence            45555555555554 332    3444555555555555554 233333344444444444444443

>PLN03210 Resistant to P

Probab=98.48  E-value=1.4e-06  Score=82.68  Aligned_cols=97  Identities=25%  Similarity=0.252  Sum_probs=78.3

Q ss_pred             CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCC
Q 035976           95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR  174 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~  174 (203)
                      .+.+|+.|++.+|.+.. ++.    .+..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|. .+..++
T Consensus       609 ~~~~L~~L~L~~s~l~~-L~~----~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~  681 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEK-LWD----GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLN  681 (1153)
T ss_pred             CccCCcEEECcCccccc-ccc----ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccC
Confidence            46789999999999887 666    77889999999999876544566 477889999999998765455886 789999


Q ss_pred             CCcEEEEe----------cCCCCCCCEEEccCCC
Q 035976          175 NLQLLDLR----------LANLTNLKTLDLRDCG  198 (203)
Q Consensus       175 ~L~~L~l~----------~~~l~~L~~L~L~~N~  198 (203)
                      +|+.|+++          ...+++|+.|++++|.
T Consensus       682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            99999987          2257789999999875

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=6e-08  Score=80.43  Aligned_cols=79  Identities=24%  Similarity=0.262  Sum_probs=50.6

Q ss_pred             CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe-----------------cC
Q 035976          123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR-----------------LA  184 (203)
Q Consensus       123 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~-----------------~~  184 (203)
                      .+|+|+.|+|..|..-..-.....-+..|+.|||++|++.. .+. ...+.++.|+.|+++                 ..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            34555555555553211222223345678888888888765 441 146678888888887                 45


Q ss_pred             CCCCCCEEEccCCCCCcC
Q 035976          185 NLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       185 ~l~~L~~L~L~~N~l~~i  202 (203)
                      .+++|++|++..|+|..+
T Consensus       299 ~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDW  316 (505)
T ss_pred             ccccceeeecccCccccc
Confidence            678899999999998654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.31  E-value=9.3e-07  Score=50.67  Aligned_cols=37  Identities=35%  Similarity=0.477  Sum_probs=18.8

Q ss_pred             CCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976          126 QLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus       126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                      +|++|++++|+++ .+|+.+..+++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            4555555555555 344445555555555555555554

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.23  E-value=1.9e-08  Score=88.09  Aligned_cols=99  Identities=30%  Similarity=0.335  Sum_probs=72.1

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS  171 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~  171 (203)
                      .+.-++.++.|+|+.|+++. +.     .+..++.|++|||++|.+. .+|..-..-..|+.|.+++|.++. +-  .+.
T Consensus       182 SLqll~ale~LnLshNk~~~-v~-----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L~--gie  251 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTK-VD-----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-LR--GIE  251 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhh-hH-----HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-hh--hHH
Confidence            34446788888888888887 32     6777888888888888887 455422222338888888888876 53  578


Q ss_pred             CCCCCcEEEEe------------cCCCCCCCEEEccCCCCC
Q 035976          172 NLRNLQLLDLR------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       172 ~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~  200 (203)
                      ++.+|+.||++            ++.+..|+.|.|.+|.+-
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88888888888            555667788888888764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.18  E-value=1.2e-06  Score=73.56  Aligned_cols=64  Identities=28%  Similarity=0.410  Sum_probs=46.3

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCC
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENN  160 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  160 (203)
                      ..+..++.|+.|++++|+++. +|.    ....++.|+.|++++|++. .+|..+.....|+.+.+++|+
T Consensus       157 ~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         157 SPLRNLPNLKNLDLSFNDLSD-LPK----LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhhhccccccccccCCchhhh-hhh----hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            456778888888888888887 565    4446778888888888887 566555455557777777774

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=3.6e-06  Score=48.19  Aligned_cols=37  Identities=32%  Similarity=0.421  Sum_probs=32.0

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN  138 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~  138 (203)
                      ++|++|++++|+++. +|+    .+..+++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~----~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPP----ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGG----HGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcc-cCc----hHhCCCCCCEEEecCCCCC
Confidence            478999999999998 776    7999999999999999998

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.14  E-value=2.9e-07  Score=78.81  Aligned_cols=103  Identities=24%  Similarity=0.283  Sum_probs=80.0

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      |..++.| -|+.|-+++|+++. +|.    .++.++.|..||.+.|.+. .+|..+..+.+|+.|.+..|++.. +|. .
T Consensus       137 p~~lC~l-pLkvli~sNNkl~~-lp~----~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~-E  207 (722)
T KOG0532|consen  137 PDGLCDL-PLKVLIVSNNKLTS-LPE----EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPE-E  207 (722)
T ss_pred             ChhhhcC-cceeEEEecCcccc-CCc----ccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCH-H
Confidence            4445544 47888888888887 777    7787888888888888887 677888888888888888888887 776 5


Q ss_pred             hCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcC
Q 035976          170 LSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +.. -.|..||++          |..|+.|++|-|.+|.+..-
T Consensus       208 l~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  208 LCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence            664 356777777          78888888888888887653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.13  E-value=4.4e-06  Score=63.09  Aligned_cols=88  Identities=25%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC-ChhhhcCCCCCcEEeccCCCCCCC--cch
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS-ILPYLNTLISLTTLILRENNIEGS--RTI  167 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~--lp~  167 (203)
                      ..|..++.|.+|.+++|.|+..-|.    --.-+++|+.|.|.+|.+... .-..+..+++|++|.+-+|.++..  .-.
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~  133 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL  133 (233)
T ss_pred             ccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee
Confidence            4566677777888888887774443    223356677888877777521 113455677788888777777641  111


Q ss_pred             hhhCCCCCCcEEEEe
Q 035976          168 EGLSNLRNLQLLDLR  182 (203)
Q Consensus       168 ~~~~~l~~L~~L~l~  182 (203)
                      ..+..+|+|+.||..
T Consensus       134 yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  134 YVLYKLPSLRTLDFQ  148 (233)
T ss_pred             EEEEecCcceEeehh
Confidence            235567777777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=7.3e-07  Score=75.63  Aligned_cols=101  Identities=37%  Similarity=0.449  Sum_probs=72.3

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS  171 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~  171 (203)
                      .+..+++|+.|++.+|.+.. +..    .+..+++|++|++++|.|+..  ..+..++.|+.|++++|.++. ++  .+.
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~-i~~----~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~  159 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEK-IEN----LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLE  159 (414)
T ss_pred             ccccccceeeeeccccchhh-ccc----chhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCc
Confidence            46677888888888888887 442    367788888888888888743  345566668888888888887 54  466


Q ss_pred             CCCCCcEEEEe--------c---CCCCCCCEEEccCCCCCcC
Q 035976          172 NLRNLQLLDLR--------L---ANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       172 ~l~~L~~L~l~--------~---~~l~~L~~L~L~~N~l~~i  202 (203)
                      .++.|+.++++        -   ..+.+++.+.++.|.+..+
T Consensus       160 ~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  160 SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            67777777776        2   4556677777777776544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.08  E-value=2.6e-06  Score=78.24  Aligned_cols=87  Identities=28%  Similarity=0.246  Sum_probs=67.4

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      ...|..++.|++|||++|.=-+.+|.    .++.+-+|++|+++...+. .+|..+.+++.|.+|++..+.-...+| ..
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i  637 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GI  637 (889)
T ss_pred             HHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-ch
Confidence            44577788888888888765555787    8888888888888888888 788888888888888888776554354 35


Q ss_pred             hCCCCCCcEEEEe
Q 035976          170 LSNLRNLQLLDLR  182 (203)
Q Consensus       170 ~~~l~~L~~L~l~  182 (203)
                      ...+.+|++|.+.
T Consensus       638 ~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  638 LLELQSLRVLRLP  650 (889)
T ss_pred             hhhcccccEEEee
Confidence            6668888888876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.02  E-value=4.9e-06  Score=76.40  Aligned_cols=95  Identities=28%  Similarity=0.362  Sum_probs=80.1

Q ss_pred             CCCCEEEccCCc--CCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCC
Q 035976           97 EELQSLDLSLNA--FEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR  174 (203)
Q Consensus        97 ~~L~~L~L~~N~--l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~  174 (203)
                      +.|++|-+..|.  +....+.    .|..++.|++|||++|.--+.+|..++.+-+|++|+++...++. +|. .+.++.
T Consensus       545 ~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~-~l~~Lk  618 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPS-GLGNLK  618 (889)
T ss_pred             CccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cch-HHHHHH
Confidence            368899998886  4442232    58889999999999988777999999999999999999999998 997 899999


Q ss_pred             CCcEEEEe-----------cCCCCCCCEEEccCC
Q 035976          175 NLQLLDLR-----------LANLTNLKTLDLRDC  197 (203)
Q Consensus       175 ~L~~L~l~-----------~~~l~~L~~L~L~~N  197 (203)
                      .|.+|++.           ...+.+|++|.+..-
T Consensus       619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hhheeccccccccccccchhhhcccccEEEeecc
Confidence            99999998           334889999987654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=3.6e-07  Score=75.95  Aligned_cols=108  Identities=30%  Similarity=0.359  Sum_probs=73.0

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh-hcCCCCCcEEeccCCCCCCCcchhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      .....|++|+.|+|+.|.+.......   .-..+++|+.|.++.|.++...-.. ...+|+|+.|+|..|.... +....
T Consensus       166 ~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~  241 (505)
T KOG3207|consen  166 KIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATS  241 (505)
T ss_pred             HHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecch
Confidence            44567888888888888876533220   1124677888888888887543333 3567888888888885332 22223


Q ss_pred             hCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976          170 LSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       170 ~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      ...+..|+.|||+            .+.++.|+.|+++.+.|..|
T Consensus       242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence            4556678888887            67788888888888887765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.98  E-value=5.3e-07  Score=64.17  Aligned_cols=84  Identities=24%  Similarity=0.279  Sum_probs=64.6

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhcc-CCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      ..+.+..+|+..+|++|.+.. +|+    .| ..++.++.+++++|+++ .+|..+..++.|+.|+++.|.+.. .|. .
T Consensus        47 y~l~~~~el~~i~ls~N~fk~-fp~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~-v  118 (177)
T KOG4579|consen   47 YMLSKGYELTKISLSDNGFKK-FPK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPR-V  118 (177)
T ss_pred             HHHhCCceEEEEecccchhhh-CCH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chH-H
Confidence            345566788888999999988 565    44 34568899999999998 688889999999999999999987 664 6


Q ss_pred             hCCCCCCcEEEEe
Q 035976          170 LSNLRNLQLLDLR  182 (203)
Q Consensus       170 ~~~l~~L~~L~l~  182 (203)
                      +..+.+|-.|+..
T Consensus       119 i~~L~~l~~Lds~  131 (177)
T KOG4579|consen  119 IAPLIKLDMLDSP  131 (177)
T ss_pred             HHHHHhHHHhcCC
Confidence            6666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.97  E-value=2.8e-07  Score=81.00  Aligned_cols=95  Identities=31%  Similarity=0.342  Sum_probs=77.5

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ  177 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~  177 (203)
                      .|.+.+.+.|.+.. ...    ++.-++.|+.|+|++|+++. + +.+..+++|++|||++|.+.. +|.-....+. |+
T Consensus       165 ~L~~a~fsyN~L~~-mD~----SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDE----SLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQ  235 (1096)
T ss_pred             hHhhhhcchhhHHh-HHH----HHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhcc-ccccchhhhh-he
Confidence            56778888898886 444    67778999999999999983 3 488899999999999999997 7752233443 88


Q ss_pred             EEEEe---------cCCCCCCCEEEccCCCCCc
Q 035976          178 LLDLR---------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       178 ~L~l~---------~~~l~~L~~L~L~~N~l~~  201 (203)
                      .|.++         +.++.+|+.||+++|-|++
T Consensus       236 ~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  236 LLNLRNNALTTLRGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eeeecccHHHhhhhHHhhhhhhccchhHhhhhc
Confidence            88887         8889999999999998764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.91  E-value=2.8e-06  Score=72.11  Aligned_cols=100  Identities=35%  Similarity=0.414  Sum_probs=82.4

Q ss_pred             CCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976           94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL  173 (203)
Q Consensus        94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l  173 (203)
                      ..+..+..+.+..|.+.. +-.    .+..+++|..+++..|++. .+...+..+++|++|++++|.|+. +.  .+..+
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~----~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~--~l~~l  139 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILN----HLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE--GLSTL  139 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhc----ccccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc--chhhc
Confidence            456777788889998876 333    5788999999999999998 343437789999999999999998 64  47788


Q ss_pred             CCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          174 RNLQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       174 ~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +.|+.|+++         +..+++|+.+++++|++..+
T Consensus       140 ~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             cchhhheeccCcchhccCCccchhhhcccCCcchhhhh
Confidence            889999998         66688999999999998765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=1.4e-06  Score=62.03  Aligned_cols=90  Identities=21%  Similarity=0.230  Sum_probs=74.6

Q ss_pred             CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976           61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS  140 (203)
Q Consensus        61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~  140 (203)
                      ...++.++++++   .+...        ++.....++.++.|++.+|.+.. +|.    ++..++.|+.|++++|.+. .
T Consensus        52 ~~el~~i~ls~N---~fk~f--------p~kft~kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~l~-~  114 (177)
T KOG4579|consen   52 GYELTKISLSDN---GFKKF--------PKKFTIKFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNPLN-A  114 (177)
T ss_pred             CceEEEEecccc---hhhhC--------CHHHhhccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCccc-c
Confidence            345777777777   55543        34555667899999999999999 898    8999999999999999998 6


Q ss_pred             ChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976          141 ILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      .|..+..+.+|-.|+..+|.+.. +|.+
T Consensus       115 ~p~vi~~L~~l~~Lds~~na~~e-id~d  141 (177)
T KOG4579|consen  115 EPRVIAPLIKLDMLDSPENARAE-IDVD  141 (177)
T ss_pred             chHHHHHHHhHHHhcCCCCcccc-CcHH
Confidence            78888889999999999998876 7764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=2.1e-05  Score=70.56  Aligned_cols=100  Identities=24%  Similarity=0.348  Sum_probs=69.7

Q ss_pred             CCCCCCEEEccCCcCCCc-ccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976           95 PFEELQSLDLSLNAFEGF-YENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL  173 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l  173 (203)
                      -||.|+.|.+.+-.+... ...    -..++|+|..||+++.+++..  ..++.+++|+.|.+.+=.+...-....+..|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~----lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQ----LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNL  219 (699)
T ss_pred             hCcccceEEecCceecchhHHH----HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence            477888888777665442 111    345678888888888888733  6777888888887777665531112256778


Q ss_pred             CCCcEEEEe-----------------cCCCCCCCEEEccCCCCC
Q 035976          174 RNLQLLDLR-----------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       174 ~~L~~L~l~-----------------~~~l~~L~~L~L~~N~l~  200 (203)
                      ++|++||+|                 -..+|.|+.||.|++.+.
T Consensus       220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            888888888                 466888899998877654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.78  E-value=3.9e-05  Score=58.07  Aligned_cols=94  Identities=28%  Similarity=0.377  Sum_probs=75.1

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcc-hhhhCCCC
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRT-IEGLSNLR  174 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp-~~~~~~l~  174 (203)
                      +.+...+||++|.+-. ++     .|..++.|.+|.+++|.|+...|.--..+++|+.|.|.+|++.. +. ...+..+|
T Consensus        41 ~d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p  113 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCP  113 (233)
T ss_pred             ccccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCC
Confidence            3467789999999876 44     68889999999999999997666555567889999999999985 32 12467788


Q ss_pred             CCcEEEEe--------------cCCCCCCCEEEccC
Q 035976          175 NLQLLDLR--------------LANLTNLKTLDLRD  196 (203)
Q Consensus       175 ~L~~L~l~--------------~~~l~~L~~L~L~~  196 (203)
                      +|++|.+-              +..+++|+.||.+.
T Consensus       114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99888774              78889999999753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.72  E-value=1.4e-05  Score=64.82  Aligned_cols=55  Identities=29%  Similarity=0.331  Sum_probs=28.9

Q ss_pred             hcCCCCCcEEeccCCCCCC----CcchhhhCCCCCCcEEEEe----------------cCCCCCCCEEEccCCCCC
Q 035976          145 LNTLISLTTLILRENNIEG----SRTIEGLSNLRNLQLLDLR----------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       145 ~~~l~~L~~L~L~~N~l~~----~lp~~~~~~l~~L~~L~l~----------------~~~l~~L~~L~L~~N~l~  200 (203)
                      +..+++|+.|||..|-++.    .+. ..+..+++|+.|+++                -...++|+.|.+++|.|+
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHH-HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            4455566666666665552    111 134455555565555                233556666666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.63  E-value=3.5e-05  Score=60.25  Aligned_cols=84  Identities=30%  Similarity=0.318  Sum_probs=51.7

Q ss_pred             ccCCCCCCCCEEEccCC--cCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh---hcCCCCCcEEeccCCCCCCCc
Q 035976           91 SLFHPFEELQSLDLSLN--AFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY---LNTLISLTTLILRENNIEGSR  165 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~l  165 (203)
                      ..+-.|++|+.|.++.|  ++.+.++.    -...+++|++++++.|++..  +..   ...+.+|..|++.++..+. +
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~-l  131 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN-L  131 (260)
T ss_pred             ccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc-c
Confidence            44556777888888888  55544444    44456888888888888762  333   3445566677777776654 2


Q ss_pred             c---hhhhCCCCCCcEEEE
Q 035976          166 T---IEGLSNLRNLQLLDL  181 (203)
Q Consensus       166 p---~~~~~~l~~L~~L~l  181 (203)
                      -   ...|.-+++|++|+-
T Consensus       132 ~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  132 DDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             ccHHHHHHHHhhhhccccc
Confidence            1   123555666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.57  E-value=3.3e-05  Score=62.76  Aligned_cols=77  Identities=25%  Similarity=0.395  Sum_probs=36.5

Q ss_pred             CCCCCEEEccCCCCCCCC----hhhhcCCCCCcEEeccCCCCCCC---cchhhhCCCCCCcEEEEe--------------
Q 035976          124 LKQLKILNLEANHFNDSI----LPYLNTLISLTTLILRENNIEGS---RTIEGLSNLRNLQLLDLR--------------  182 (203)
Q Consensus       124 l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~---lp~~~~~~l~~L~~L~l~--------------  182 (203)
                      -+.|+++...+|++...-    ...|...+.|+.+.+..|.|...   +-...|..+++|++|||.              
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            344555555555443211    12333445555555555544310   111234555666666665              


Q ss_pred             -cCCCCCCCEEEccCCCCC
Q 035976          183 -LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       183 -~~~l~~L~~L~L~~N~l~  200 (203)
                       +..++.|+.|+++++.++
T Consensus       236 aL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             Hhcccchheeecccccccc
Confidence             555556666666655543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.57  E-value=3e-05  Score=60.60  Aligned_cols=93  Identities=29%  Similarity=0.307  Sum_probs=66.1

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCC--CCCCCChhhhcCCCCCcEEeccCCCCCC--Ccchh
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN--HFNDSILPYLNTLISLTTLILRENNIEG--SRTIE  168 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~lp~~  168 (203)
                      ...+..|+.+.+.+..++. +-     .+..+++|+.|.++.|  .+.+.++.....+++|+++++++|+++.  +++  
T Consensus        39 ~d~~~~le~ls~~n~gltt-~~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--  110 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTT-LT-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--  110 (260)
T ss_pred             cccccchhhhhhhccceee-cc-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--
Confidence            3345566667777666665 22     5667999999999999  6665566666677999999999999884  233  


Q ss_pred             hhCCCCCCcEEEEe--------------cCCCCCCCEEE
Q 035976          169 GLSNLRNLQLLDLR--------------LANLTNLKTLD  193 (203)
Q Consensus       169 ~~~~l~~L~~L~l~--------------~~~l~~L~~L~  193 (203)
                      ....+.+|..|++.              |.-+++|++||
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            35666777777776              55666666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.31  E-value=0.00011  Score=66.14  Aligned_cols=97  Identities=28%  Similarity=0.401  Sum_probs=73.9

Q ss_pred             CCCCEEEccCCcCC-Ccccchhhhcc-CCCCCCCEEEccCCCCCCC-ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976           97 EELQSLDLSLNAFE-GFYENRAYDSN-GSLKQLKILNLEANHFNDS-ILPYLNTLISLTTLILRENNIEGSRTIEGLSNL  173 (203)
Q Consensus        97 ~~L~~L~L~~N~l~-~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l  173 (203)
                      .+|++|++++.... ...|.    .+ .-+|.|+.|.+.+-.+... ......++++|..||+++.+++. +  ..++.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~----kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPK----KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHH----HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhcc
Confidence            47888999886532 21332    22 3489999999998777532 23445789999999999999987 6  368999


Q ss_pred             CCCcEEEEe------------cCCCCCCCEEEccCCCCC
Q 035976          174 RNLQLLDLR------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       174 ~~L~~L~l~------------~~~l~~L~~L~L~~N~l~  200 (203)
                      ++|++|.+.            +..|++|+.||+|..+..
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            999999887            778999999999987643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.22  E-value=0.00052  Score=54.51  Aligned_cols=109  Identities=27%  Similarity=0.238  Sum_probs=79.1

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh-------------hcCCCCCcEEecc
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-------------LNTLISLTTLILR  157 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-------------~~~l~~L~~L~L~  157 (203)
                      +.+.++++|+.++||+|.|....|......+++-+.|.+|.+++|.+...-...             ...-|.|+.....
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            456788999999999999987777644445677889999999999986322211             2345789999999


Q ss_pred             CCCCCCCcchh----hhCCCCCCcEEEEe----------------cCCCCCCCEEEccCCCCC
Q 035976          158 ENNIEGSRTIE----GLSNLRNLQLLDLR----------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       158 ~N~l~~~lp~~----~~~~l~~L~~L~l~----------------~~~l~~L~~L~L~~N~l~  200 (203)
                      .|++.. .|..    .+.....|+.+.+.                ...+.+|+.|||+.|-|+
T Consensus       166 rNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         166 RNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            999875 3321    23334567777665                567788999999999875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.00046  Score=55.45  Aligned_cols=67  Identities=24%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhcc-CCCCCCCEEEccCCCCCCCChh-hhcCCCCCcEEeccCCCC
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDSILP-YLNTLISLTTLILRENNI  161 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l  161 (203)
                      ...+.++++|++|+++.|++...|.     .+ ....+|++|-|.+..+.+.... .+..+|.++.|+++.|.+
T Consensus        90 ~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   90 GAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             HHHHhcCccceEeeccCCcCCCccc-----cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            3456789999999999999887554     33 2456788888888777654443 345667777777777743

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.00042  Score=55.71  Aligned_cols=85  Identities=21%  Similarity=0.294  Sum_probs=53.7

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN  175 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~  175 (203)
                      .+.++.+||.+|.++.- ... +.-+.++|.|++|+++.|.+...+-..-....+|+.|-|.+..+...-....+..+|.
T Consensus        70 ~~~v~elDL~~N~iSdW-seI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDW-SEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccH-HHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            46778888888888752 211 1145678888888888888874332211456678888888877664222223455666


Q ss_pred             CcEEEEe
Q 035976          176 LQLLDLR  182 (203)
Q Consensus       176 L~~L~l~  182 (203)
                      ++.|+++
T Consensus       148 vtelHmS  154 (418)
T KOG2982|consen  148 VTELHMS  154 (418)
T ss_pred             hhhhhhc
Confidence            6666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=4.6e-05  Score=60.49  Aligned_cols=99  Identities=30%  Similarity=0.258  Sum_probs=72.8

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      .|..|++.|.   +|.+.          ....+++.|++|.|+-|+++..-      .+..++.|+.|.|..|.|....-
T Consensus        20 ~vkKLNcwg~---~L~DI----------sic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen   20 NVKKLNCWGC---GLDDI----------SICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             HhhhhcccCC---CccHH----------HHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccHHH
Confidence            4556666666   55443          45678899999999999998833      46789999999999999984322


Q ss_pred             -hhhcCCCCCcEEeccCCCCCCCcch----hhhCCCCCCcEEE
Q 035976          143 -PYLNTLISLTTLILRENNIEGSRTI----EGLSNLRNLQLLD  180 (203)
Q Consensus       143 -~~~~~l~~L~~L~L~~N~l~~~lp~----~~~~~l~~L~~L~  180 (203)
                       ..+.++++|+.|.|..|.-.+.-+.    ..+..+|+|+.||
T Consensus        81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence             3568999999999999988774332    2355677777775

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.74  E-value=0.0083  Score=41.88  Aligned_cols=83  Identities=16%  Similarity=0.208  Sum_probs=35.4

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      ...|...+.|+.+.+..+ +.. ++..   .+..++.++.+.+.. .+.......|..+++|+.+.+..+ +.. ++...
T Consensus        28 ~~~F~~~~~l~~i~~~~~-~~~-i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~-i~~~~   99 (129)
T PF13306_consen   28 ENAFSNCTSLKSINFPNN-LTS-IGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITE-IGSSS   99 (129)
T ss_dssp             TTTTTT-TT-SEEEESST-TSC-E-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BE-EHTTT
T ss_pred             hhhccccccccccccccc-ccc-ccee---eeecccccccccccc-cccccccccccccccccccccCcc-ccE-Echhh
Confidence            445566666666666554 444 2221   455555566666644 322122234445666666666544 433 44444


Q ss_pred             hCCCCCCcEEEE
Q 035976          170 LSNLRNLQLLDL  181 (203)
Q Consensus       170 ~~~l~~L~~L~l  181 (203)
                      |... .|+.+.+
T Consensus       100 f~~~-~l~~i~~  110 (129)
T PF13306_consen  100 FSNC-NLKEINI  110 (129)
T ss_dssp             TTT--T--EEE-
T ss_pred             hcCC-CceEEEE
Confidence            5554 5555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.63  E-value=0.0012  Score=29.57  Aligned_cols=17  Identities=41%  Similarity=0.675  Sum_probs=9.2

Q ss_pred             CCCCEEEccCCCCCcCC
Q 035976          187 TNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       187 ~~L~~L~L~~N~l~~ip  203 (203)
                      ++|+.|+|++|+|+.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35777777777777765

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=9.1e-05  Score=58.87  Aligned_cols=89  Identities=33%  Similarity=0.374  Sum_probs=68.2

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCC
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLR  174 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~  174 (203)
                      +.+.+.|++=++.++. |.     -...|+.|++|.|+-|+++.  -..+..++.|+.|+|..|.|.. +.. .-+.+++
T Consensus        18 l~~vkKLNcwg~~L~D-Is-----ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-IS-----ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIES-LDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccH-HH-----HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhccccc-HHHHHHHhcCc
Confidence            5566778888888776 33     45679999999999999983  3457789999999999999987 542 1356888


Q ss_pred             CCcEEEEe----------------cCCCCCCCEEE
Q 035976          175 NLQLLDLR----------------LANLTNLKTLD  193 (203)
Q Consensus       175 ~L~~L~l~----------------~~~l~~L~~L~  193 (203)
                      +|+.|.|.                +..+|+|+.||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888886                56677777766

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.00026  Score=56.87  Aligned_cols=56  Identities=29%  Similarity=0.249  Sum_probs=23.6

Q ss_pred             CCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEecc
Q 035976           99 LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR  157 (203)
Q Consensus        99 L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  157 (203)
                      |+++||++..++..--.   .-++.+.+|+.|.+.++++.+.+...+..-..|+.|+++
T Consensus       187 lq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls  242 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS  242 (419)
T ss_pred             hHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence            55555555544421000   023334445555555555544333334444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.00089  Score=53.89  Aligned_cols=101  Identities=21%  Similarity=0.165  Sum_probs=49.8

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC---CCChhhhcCCCCCcEEeccCCC-CCCCcchh
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN---DSILPYLNTLISLTTLILRENN-IEGSRTIE  168 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~N~-l~~~lp~~  168 (203)
                      +..++.|..|+++.+.++...-...-..+  -++|..|+++++.-.   ..+..-...+++|..|||+.+. ++...- .
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~  332 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-Q  332 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-H
Confidence            44556666666666655432211000011  123444444443211   0111222456777777777653 333222 2


Q ss_pred             hhCCCCCCcEEEEe------------cCCCCCCCEEEccC
Q 035976          169 GLSNLRNLQLLDLR------------LANLTNLKTLDLRD  196 (203)
Q Consensus       169 ~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~  196 (203)
                      .|.+++.|++|.++            +...++|.+|++.+
T Consensus       333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence            56667777777766            66667777777543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.65  E-value=0.0033  Score=30.12  Aligned_cols=11  Identities=45%  Similarity=0.477  Sum_probs=4.2

Q ss_pred             CEEEccCCcCC
Q 035976          100 QSLDLSLNAFE  110 (203)
Q Consensus       100 ~~L~L~~N~l~  110 (203)
                      ++|++++|.++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.62  E-value=0.022  Score=39.71  Aligned_cols=98  Identities=19%  Similarity=0.262  Sum_probs=47.2

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      ...|.+.++|+.+.+.. .+.. ++..   .|..+++|+.+.+..+ +...-...|..++.++.+.+.. .+.. ++...
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~-I~~~---~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~~~   76 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKK-IGEN---AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGDNA   76 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--E-E-TT---TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-TTT
T ss_pred             HHHHhCCCCCCEEEECC-CeeE-eChh---hccccccccccccccc-ccccceeeeecccccccccccc-cccc-ccccc
Confidence            44566667777777764 4454 3331   5666667777777664 4433334556666677777754 4433 44445


Q ss_pred             hCCCCCCcEEEEe----------cCCCCCCCEEEccC
Q 035976          170 LSNLRNLQLLDLR----------LANLTNLKTLDLRD  196 (203)
Q Consensus       170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~  196 (203)
                      |..+++|+.+.+.          +... .|+.+.+..
T Consensus        77 F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccCccccEEchhhhcCC-CceEEEECC
Confidence            6667777777764          5554 666666553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.59  E-value=0.027  Score=45.09  Aligned_cols=93  Identities=13%  Similarity=0.181  Sum_probs=61.8

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcc----cch---hhhccCCCCCCCEEEccC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFY----ENR---AYDSNGSLKQLKILNLEA  134 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----p~~---~~~~l~~l~~L~~L~L~~  134 (203)
                      -.++.++|+|+   .++...+...    ...+.+-.+|+..++++-. +|..    +..   ....+-++|.|+..+|+.
T Consensus        30 d~~~evdLSGN---tigtEA~e~l----~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          30 DELVEVDLSGN---TIGTEAMEEL----CNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             cceeEEeccCC---cccHHHHHHH----HHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            45788888888   6543311111    2345566788888887643 3322    210   122456789999999999


Q ss_pred             CCCCCCChh----hhcCCCCCcEEeccCCCCC
Q 035976          135 NHFNDSILP----YLNTLISLTTLILRENNIE  162 (203)
Q Consensus       135 n~l~~~~p~----~~~~l~~L~~L~L~~N~l~  162 (203)
                      |.+....|+    .+..-..|.+|.+++|.+.
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            999876665    4566788999999999875

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.56  E-value=0.038  Score=46.84  Aligned_cols=50  Identities=14%  Similarity=0.174  Sum_probs=32.3

Q ss_pred             CCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCC-CCCCCChhhhcCCCCCcEEeccCCC
Q 035976           97 EELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEAN-HFNDSILPYLNTLISLTTLILRENN  160 (203)
Q Consensus        97 ~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N~  160 (203)
                      .+|++|.++++ .++. +|.    .+  .++|+.|.+++| .+. .+|.      .|+.|++..+.
T Consensus        72 ~sLtsL~Lsnc~nLts-LP~----~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~  123 (426)
T PRK15386         72 NELTEITIENCNNLTT-LPG----SI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSA  123 (426)
T ss_pred             CCCcEEEccCCCCccc-CCc----hh--hhhhhheEccCccccc-cccc------ccceEEeCCCC
Confidence            36999999874 4443 564    44  357999999988 554 4554      35566665554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.52  E-value=0.013  Score=29.05  Aligned_cols=18  Identities=33%  Similarity=0.645  Sum_probs=13.1

Q ss_pred             CCCCCEEEccCCCCCcCC
Q 035976          186 LTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       186 l~~L~~L~L~~N~l~~ip  203 (203)
                      +++|+.|+|++|+|+.||
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            456777888888777765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.52  E-value=0.013  Score=29.05  Aligned_cols=18  Identities=33%  Similarity=0.645  Sum_probs=13.1

Q ss_pred             CCCCCEEEccCCCCCcCC
Q 035976          186 LTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       186 l~~L~~L~L~~N~l~~ip  203 (203)
                      +++|+.|+|++|+|+.||
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            456777888888777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.44  E-value=0.0074  Score=28.83  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=17.2

Q ss_pred             CCCEEEccCCCCCCCChhhhcC
Q 035976          126 QLKILNLEANHFNDSILPYLNT  147 (203)
Q Consensus       126 ~L~~L~L~~n~l~~~~p~~~~~  147 (203)
                      +|++|++++|+++ .+|+.|..
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            5789999999999 78877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.08  E-value=0.00025  Score=55.10  Aligned_cols=63  Identities=13%  Similarity=0.029  Sum_probs=32.3

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNI  161 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (203)
                      |..++.+..|+++.|.+.. .|.    .+..+..+..+++..|..+ ..|.+++..+.++.+++..|.+
T Consensus        61 ~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             hHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            3334455555555555544 444    4444444555555555554 4555555555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.58  E-value=0.039  Score=27.27  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=13.9

Q ss_pred             CCCCcEEeccCCCCCCCcchhhh
Q 035976          148 LISLTTLILRENNIEGSRTIEGL  170 (203)
Q Consensus       148 l~~L~~L~L~~N~l~~~lp~~~~  170 (203)
                      +++|+.|+|++|+++. +|...|
T Consensus         1 L~~L~~L~L~~N~l~~-lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSS-LPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCc-CCHHHc
Confidence            3466777777777776 665443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.58  E-value=0.039  Score=27.27  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=13.9

Q ss_pred             CCCCcEEeccCCCCCCCcchhhh
Q 035976          148 LISLTTLILRENNIEGSRTIEGL  170 (203)
Q Consensus       148 l~~L~~L~L~~N~l~~~lp~~~~  170 (203)
                      +++|+.|+|++|+++. +|...|
T Consensus         1 L~~L~~L~L~~N~l~~-lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSS-LPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCc-CCHHHc
Confidence            3466777777777776 665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.87  E-value=0.42  Score=40.66  Aligned_cols=30  Identities=17%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             CCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCCC
Q 035976           97 EELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANHF  137 (203)
Q Consensus        97 ~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l  137 (203)
                      ++|++|++++| .+.. +|.          .|+.|++..+..
T Consensus        94 ~nLe~L~Ls~Cs~L~s-LP~----------sLe~L~L~~n~~  124 (426)
T PRK15386         94 EGLEKLTVCHCPEISG-LPE----------SVRSLEIKGSAT  124 (426)
T ss_pred             hhhhheEccCcccccc-ccc----------ccceEEeCCCCC
Confidence            47899999988 5544 554          356666665543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=92.63  E-value=0.1  Score=26.01  Aligned_cols=16  Identities=50%  Similarity=0.628  Sum_probs=10.4

Q ss_pred             CCCCEEEccCCCCCcC
Q 035976          187 TNLKTLDLRDCGITTI  202 (203)
Q Consensus       187 ~~L~~L~L~~N~l~~i  202 (203)
                      .+|+.|+|+.|+|+.|
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4666777777766554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.45  E-value=0.087  Score=26.25  Aligned_cols=16  Identities=25%  Similarity=0.513  Sum_probs=10.9

Q ss_pred             CCCEEEccCCCCCcCC
Q 035976          188 NLKTLDLRDCGITTIQ  203 (203)
Q Consensus       188 ~L~~L~L~~N~l~~ip  203 (203)
                      +|+.|++++|+++.+|
T Consensus         3 ~L~~L~vs~N~Lt~LP   18 (26)
T smart00364        3 SLKELNVSNNQLTSLP   18 (26)
T ss_pred             ccceeecCCCccccCc
Confidence            5667777777776665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.85  E-value=0.0027  Score=49.51  Aligned_cols=86  Identities=15%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      +...+..+...+.||++.|++.. ...    .++-++.|..|+++.|++. ..|..++....+..+++..|..+. .|. 
T Consensus        34 ~v~ei~~~kr~tvld~~s~r~vn-~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~-  105 (326)
T KOG0473|consen   34 PVREIASFKRVTVLDLSSNRLVN-LGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPK-  105 (326)
T ss_pred             chhhhhccceeeeehhhhhHHHh-hcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCc-
Confidence            44566777788888888888765 444    6667778888888888887 678888888888888888888877 775 


Q ss_pred             hhCCCCCCcEEEEe
Q 035976          169 GLSNLRNLQLLDLR  182 (203)
Q Consensus       169 ~~~~l~~L~~L~l~  182 (203)
                      .+...+.++++++.
T Consensus       106 s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQK  119 (326)
T ss_pred             cccccCCcchhhhc
Confidence            78888888887765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.88  E-value=0.039  Score=42.07  Aligned_cols=80  Identities=25%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC-CCChhhhc-CCCCCcEEeccCC-CCCCCcchhhhCCCC
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN-DSILPYLN-TLISLTTLILREN-NIEGSRTIEGLSNLR  174 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~L~~N-~l~~~lp~~~~~~l~  174 (203)
                      .++.+|-++..+..    .++..+..++.++.|.+.++.-- +..-+.++ ..++|+.|++++| +|+. -....+..++
T Consensus       102 ~IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDSSIMY----EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLK  176 (221)
T ss_pred             eEEEEecCCchHHH----HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHhh
Confidence            45667777766554    34447777777777777665432 11222232 3467888888876 4664 2223566777


Q ss_pred             CCcEEEEe
Q 035976          175 NLQLLDLR  182 (203)
Q Consensus       175 ~L~~L~l~  182 (203)
                      +|+.|.+.
T Consensus       177 nLr~L~l~  184 (221)
T KOG3864|consen  177 NLRRLHLY  184 (221)
T ss_pred             hhHHHHhc
Confidence            77777664

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.65  E-value=0.19  Score=24.19  Aligned_cols=14  Identities=57%  Similarity=0.714  Sum_probs=7.9

Q ss_pred             CCCCEEEccCCCCC
Q 035976          187 TNLKTLDLRDCGIT  200 (203)
Q Consensus       187 ~~L~~L~L~~N~l~  200 (203)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            56677777777654

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.07  E-value=0.94  Score=22.77  Aligned_cols=14  Identities=29%  Similarity=0.503  Sum_probs=9.6

Q ss_pred             CCCCEEEccCCCCC
Q 035976          187 TNLKTLDLRDCGIT  200 (203)
Q Consensus       187 ~~L~~L~L~~N~l~  200 (203)
                      ++|++|+|++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45777777777764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=80.41  E-value=1.1  Score=38.28  Aligned_cols=14  Identities=36%  Similarity=0.726  Sum_probs=6.5

Q ss_pred             CCCCCCCEEEccCC
Q 035976          184 ANLTNLKTLDLRDC  197 (203)
Q Consensus       184 ~~l~~L~~L~L~~N  197 (203)
                      ..++.|++|+|+.+
T Consensus       292 ~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  292 ERCPSLRELDLSGC  305 (482)
T ss_pred             HhcCcccEEeeecC
Confidence            33444555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=80.29  E-value=1.9  Score=36.79  Aligned_cols=89  Identities=22%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             CCCCCCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCC-CCCCChhhhc-CCCCCcEEeccCCC-CCCC-cch
Q 035976           93 FHPFEELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANH-FNDSILPYLN-TLISLTTLILRENN-IEGS-RTI  167 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~-lp~  167 (203)
                      ....+.|+.|+++++ ......+.........+++|+.+++++.. ++...-..+. .+++|+.|.+.+.. ++.. +-.
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~  289 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS  289 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence            445678888888763 21111221111133456788888888877 5544444443 37788888876665 4431 222


Q ss_pred             hhhCCCCCCcEEEEe
Q 035976          168 EGLSNLRNLQLLDLR  182 (203)
Q Consensus       168 ~~~~~l~~L~~L~l~  182 (203)
                       ....++.|++|+++
T Consensus       290 -i~~~~~~L~~L~l~  303 (482)
T KOG1947|consen  290 -IAERCPSLRELDLS  303 (482)
T ss_pred             -HHHhcCcccEEeee
Confidence             34567888888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 5e-20
 Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 43/211 (20%)

Query: 6   CCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVM 65
             L +E   L++ K            + +L  W      + +    +DGV C     +V 
Sbjct: 8   QSLYREIHQLISFKDVLPD-------KNLLPDWSS----NKNPCT-FDGVTCR--DDKVT 53

Query: 66  HLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLK 125
            +        + S   L        S       L+SL LS +   G     +        
Sbjct: 54  SI--------DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-----SVSGFKCSA 100

Query: 126 QLKILNLEANHFNDSILPY--LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL-- 181
            L  L+L  N  +  +     L +   L  L +  N ++    + G   L +L++LDL  
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 182 ------------RLANLTNLKTLDLRDCGIT 200
                              LK L +    I+
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKIS 191

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 19/136 (13%)

Query: 75  FNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134
            + S NS+ G +++ + L     EL+ L +S N   G               L+ L++ +
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV------DVSRCVNLEFLDVSS 209

Query: 135 NHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR---------LA 184
           N+F+  I P+L    +L  L +  N + G       +S    L+LL++            
Sbjct: 210 NNFSTGI-PFLGDCSALQHLDISGNKLSGD--FSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 185 NLTNLKTLDLRDCGIT 200
            L +L+ L L +   T
Sbjct: 267 PLKSLQYLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 9e-12
 Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 27/146 (18%)

Query: 66  HLLLNDTAKFNFSYNSLFG---VSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG 122
               N   +     N   G    +L N S      EL SL LS N   G        S G
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCS------ELVSLHLSFNYLSG----TIPSSLG 439

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDL 181
           SL +L+ L L  N     I   L  + +L TLIL  N++ G   I  GLSN  NL  + L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE--IPSGLSNCTNLNWISL 497

Query: 182 R-----------LANLTNLKTLDLRD 196
                       +  L NL  L L +
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSN 523

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 20/138 (14%)

Query: 75  FNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134
            N S N   G  +    L      LQ L L+ N F G   +     +G+   L  L+L  
Sbjct: 252 LNISSNQFVG-PIPPLPLKS----LQYLSLAENKFTGEIPD---FLSGACDTLTGLDLSG 303

Query: 135 NHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLT------- 187
           NHF  ++ P+  +   L +L L  NN  G   ++ L  +R L++LDL     +       
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 188 -----NLKTLDLRDCGIT 200
                +L TLDL     +
Sbjct: 364 TNLSASLLTLDLSSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 19/138 (13%)

Query: 75  FNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134
            + S N+  G  ++     +P   LQ L L  N F G    +   +  +  +L  L+L  
Sbjct: 373 LDLSSNNFSG-PILPNLCQNPKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSF 427

Query: 135 NHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR----------- 182
           N+ + +I   L +L  L  L L  N +EG   I + L  ++ L+ L L            
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGE--IPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 183 LANLTNLKTLDLRDCGIT 200
           L+N TNL  + L +  +T
Sbjct: 486 LSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 21/136 (15%)

Query: 75  FNFSYNSLFG-VSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLE 133
              S N + G V +           L+ LD+S N F            G    L+ L++ 
Sbjct: 183 LAISGNKISGDVDVSRCV------NLEFLDVSSNNFST-----GIPFLGDCSALQHLDIS 231

Query: 134 ANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL---------A 184
            N  +      ++T   L  L +  N   G      L +L+ L L + +           
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG 291

Query: 185 NLTNLKTLDLRDCGIT 200
               L  LDL      
Sbjct: 292 ACDTLTGLDLSGNHFY 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 18/138 (13%)

Query: 75  FNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134
            + S+N   G   +  SL +    L +LDLS N F G               L+ L L+ 
Sbjct: 348 LDLSFNEFSGE--LPESLTNLSASLLTLDLSSNNFSGPILPN--LCQNPKNTLQELYLQN 403

Query: 135 NHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR----------- 182
           N F   I P L+    L +L L  N + G  TI   L +L  L+ L L            
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSG--TIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 183 LANLTNLKTLDLRDCGIT 200
           L  +  L+TL L    +T
Sbjct: 462 LMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 27/136 (19%)

Query: 76  NFSYNSLFGV---SLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNL 132
           + S+N L G    SL + S      +L+ L L LN  EG            +K L+ L L
Sbjct: 424 HLSFNYLSGTIPSSLGSLS------KLRDLKLWLNMLEGEIP----QELMYVKTLETLIL 473

Query: 133 EANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR--------- 182
           + N     I   L+   +L  + L  N + G   I + +  L NL +L L          
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIP 531

Query: 183 --LANLTNLKTLDLRD 196
             L +  +L  LDL  
Sbjct: 532 AELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 16/111 (14%)

Query: 75  FNFSYNSLFGV---SLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILN 131
                N L G     LM          L++L L  N   G           +   L  ++
Sbjct: 447 LKLWLNMLEGEIPQELMYVK------TLETLILDFNDLTG----EIPSGLSNCTNLNWIS 496

Query: 132 LEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDL 181
           L  N     I  ++  L +L  L L  N+  G+  I   L + R+L  LDL
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN--IPAELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
                  +++   + G        +  +   +  L++  N  +  I   + ++  L  L 
Sbjct: 607 LSTRNPCNITSRVYGGHT----SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 156 LRENNIEGSRTI-EGLSNLRNLQLLDL-----------RLANLTNLKTLDL 194
           L  N+I GS  I + + +LR L +LDL            ++ LT L  +DL
Sbjct: 663 LGHNDISGS--IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 75  FNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134
              + N + G   +        +E      +L  F+G       +    L      N+ +
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIR----SEQLNRLSTRNPCNITS 617

Query: 135 NHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDL-----------R 182
             +     P  +   S+  L +  N + G   I + + ++  L +L+L            
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGY--IPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 183 LANLTNLKTLDL 194
           + +L  L  LDL
Sbjct: 676 VGDLRGLNILDL 687

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 29/129 (22%), Positives = 40/129 (31%), Gaps = 19/129 (14%)

Query: 75  FNFSYNSLFGV---SLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILN 131
               +N L G     L N +       L  + LS N   G          G L+ L IL 
Sbjct: 471 LILDFNDLTGEIPSGLSNCT------NLNWISLSNNRLTGEIPK----WIGRLENLAILK 520

Query: 132 LEANHFNDSILPYLNTLISLTTLILRENNIEGS--RTIEGLSNLRNLQLLD----LRLAN 185
           L  N F+ +I   L    SL  L L  N   G+    +   S       +     + + N
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580

Query: 186 LTNLKTLDL 194
               K    
Sbjct: 581 DGMKKECHG 589

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 23/96 (23%)

Query: 76  NFSYNSLFG---VSLMNFSLFHPFEELQSLDLSLNAFEG-----FYENRAYDSNGSLKQL 127
           + SYN L G     + +         L  L+L  N   G               G L+ L
Sbjct: 638 DMSYNMLSGYIPKEIGSMP------YLFILNLGHNDISGSIPDEV---------GDLRGL 682

Query: 128 KILNLEANHFNDSILPYLNTLISLTTLILRENNIEG 163
            IL+L +N  +  I   ++ L  LT + L  NN+ G
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 74  KFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEG-----FYENRAYDSNGSLKQLK 128
             N +     G +   F        +  LD+S N   G               GS+  L 
Sbjct: 612 PCNITSRVYGGHTSPTFDNN---GSMMFLDMSYNMLSGYIPKEI---------GSMPYLF 659

Query: 129 ILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDL 181
           ILNL  N  + SI   +  L  L  L L  N ++G   I + +S L  L  +DL
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG--RIPQAMSALTMLTEIDL 711

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 17/117 (14%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
              ++ L ++            Y+    L  L+ L +         +P L+ L SLT L 
Sbjct: 65  AHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTI 202
           +  +  + S  +  ++ L  +  +DL           L  L  LK+L+++  G+   
Sbjct: 119 ISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L+ L +          +    +   L  L +L++  +  +DSIL  +NTL  + ++ L  
Sbjct: 90  LERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203
           N       I  L  L  L+ L+++         + +   L  L      I   +
Sbjct: 146 NG--AITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 11/115 (9%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
                 +    + N S       L  LD+S +A +    +       +L ++  ++L  N
Sbjct: 94  RIMGKDVTSDKIPNLS---GLTSLTLLDISHSAHD----DSILTKINTLPKVNSIDLSYN 146

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLK 190
                I+P L TL  L +L ++ + +       G+ +   L  L      +   K
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 15/90 (16%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           + K      L  +   +        + SLT + L   N+     + G+    N++ L + 
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTIN 74

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                    ++ L+NL+ L +    +T+ +
Sbjct: 75  NIHATNYNPISGLSNLERLRIMGKDVTSDK 104

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 68  LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQL 127
           L  +    N ++N L  +     + F  + +L SLD+  N           +    L  L
Sbjct: 23  LPTNITVLNLTHNQLRRLP---AANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPML 75

Query: 128 KILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----- 182
           K+LNL+ N  +           +LT L L  N+I+  +        +NL  LDL      
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLS 134

Query: 183 ------LANLTNLKTLDLRDCGITTIQ 203
                    L NL+ L L +  I  ++
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALK 161

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 7e-12
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 14/140 (10%)

Query: 74  KFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLE 133
             N   N + G+     ++F     L+ L LS +             + +   L ILNL 
Sbjct: 333 HLNMEDNDIPGI---KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 134 ANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------- 182
            N  +       + L  L  L L  N I    T +    L N+  + L            
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 183 LANLTNLKTLDLRDCGITTI 202
            A + +L+ L LR   +  +
Sbjct: 450 FALVPSLQRLMLRRVALKNV 469

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 25/147 (17%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
                +L  V   + S F P   L  LDLS N           D    L++L+IL+L+ N
Sbjct: 460 MLRRVALKNVDS-SPSPFQPLRNLTILDLSNNNIANI----NDDMLEGLEKLEILDLQHN 514

Query: 136 H--------FNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----- 182
           +             + +L  L  L  L L  N  +    +E   +L  L+++DL      
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLN 573

Query: 183 ------LANLTNLKTLDLRDCGITTIQ 203
                   N  +LK+L+L+   IT+++
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVE 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 19/139 (13%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           N  +N L  +S      F     L  L L  N+ +    N         K L  L+L  N
Sbjct: 79  NLQHNELSQLSD---KTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHN 131

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR-----------L 183
             + + L     L +L  L+L  N I+        +    +L+ L+L             
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 184 ANLTNLKTLDLRDCGITTI 202
             +  L  L L +  +   
Sbjct: 192 HAIGRLFGLFLNNVQLGPS 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 32/142 (22%), Positives = 47/142 (33%), Gaps = 20/142 (14%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S+N L    L         E LQ L LS N  +            +   LK L L +N
Sbjct: 127 DLSHNGLSSTKL---GTQVQLENLQELLLSNNKIQALKSE--ELDIFANSSLKKLELSSN 181

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLAN---------- 185
              +      + +  L  L L    +  S T +    L N  + +L L+N          
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 186 -----LTNLKTLDLRDCGITTI 202
                 TNL  LDL    +  +
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVV 263

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 23/146 (15%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
             SYN    ++    + F     LQ L L   A +    + +      L+ L IL+L  N
Sbjct: 436 YLSYNKYLQLT---RNSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNN 490

Query: 136 HFNDSILPYLNTLISLTTLILRENNIE-------GSRTIEGLSNLRNLQLLDLR------ 182
           +  +     L  L  L  L L+ NN+            I  L  L +L +L+L       
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 183 -----LANLTNLKTLDLRDCGITTIQ 203
                  +L  LK +DL    + T+ 
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S + L   S   F     +  L  LDLS N           DS   L QL+   LE N
Sbjct: 228 SLSNSQLSTTSNTTFLGL-KWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYN 282

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLR 195
           +        L+ L ++  L L+ +  + S     +S     ++ D     L  L+ L++ 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQS-----ISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 196 DCGITTIQ 203
           D  I  I+
Sbjct: 338 DNDIPGIK 345

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 20/137 (14%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSN----GSLKQLKILN 131
           + S N++  ++     +    E+L+ LDL  N     +++            L  L ILN
Sbjct: 486 DLSNNNIANIN---DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 132 LEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR--------- 182
           LE+N F++  +     L  L  + L  NN+         +N  +L+ L+L+         
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEK 601

Query: 183 ---LANLTNLKTLDLRD 196
                   NL  LD+R 
Sbjct: 602 KVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 22/146 (15%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRA-----YDSNGSLKQLKIL 130
              YN++  +        H    ++ L+L  +  +      +       S   LK L+ L
Sbjct: 278 FLEYNNIQHLF---SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 131 NLEANHFNDSILPYLNTLISLTTLILRENNIEGSR-TIEGLSNLRNLQLLDLRL------ 183
           N+E N            LI+L  L L  +       T E   +L +  L  L L      
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 184 -------ANLTNLKTLDLRDCGITTI 202
                  + L +L+ LDL    I   
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQE 420

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 19/117 (16%)

Query: 98  ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR 157
             +  D S               +     + +LNL  N               LT+L + 
Sbjct: 5   SHEVADCSHLKLTQV-------PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 158 ENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203
            N I      E    L  L++L+L+            A  TNL  L L    I  I+
Sbjct: 58  FNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.8 bits (151), Expect = 8e-12
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 62/226 (27%)

Query: 7   CLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTR--RV 64
           C  +++  LL +K     + +       L+SW+     +  C+  W GV C+  T+  RV
Sbjct: 3   CNPQDKQALLQIKK---DLGNPT----TLSSWLPT---TDCCNRTWLGVLCDTDTQTYRV 52

Query: 65  MHLLLNDTAKFNFSYNSLFG-----------VSLMNFSLFHP-------------FEELQ 100
            +L        + S  +L               L    +                  +L 
Sbjct: 53  NNL--------DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 101 SLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENN 160
            L ++     G       D    +K L  L+   N  + ++ P +++L +L  +    N 
Sbjct: 105 YLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 161 IEGS--RTIEGLSNLRNLQLLDLRLANLT----------NLKTLDL 194
           I G+   +    S L     + +    LT          NL  +DL
Sbjct: 161 ISGAIPDSYGSFSKL--FTSMTISRNRLTGKIPPTFANLNLAFVDL 204

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 26/134 (19%)

Query: 75  FNFSYNSLFGV---SLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILN 131
             F  N + G    S  +FS     +   S+ +S N   G        +  +L  L  ++
Sbjct: 154 ITFDGNRISGAIPDSYGSFS-----KLFTSMTISRNRLTGKIP----PTFANLN-LAFVD 203

Query: 132 LEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR--------- 182
           L  N           +  +   + L +N++     +  +   +NL  LDLR         
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 183 --LANLTNLKTLDL 194
             L  L  L +L++
Sbjct: 262 QGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 75  FNFSYNSLFG---VSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILN 131
            + S N L G   V   +          Q + L+ N+             G  K L  L+
Sbjct: 202 VDLSRNMLEGDASVLFGSDK------NTQKIHLAKNSLAF-----DLGKVGLSKNLNGLD 250

Query: 132 LEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL 181
           L  N    ++   L  L  L +L +  NN+ G   I    NL+   +   
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 13/66 (19%)

Query: 148 LISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR------------LANLTNLKTLDL 194
              +  L L   N+     I   L+NL  L  L +             +A LT L  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 195 RDCGIT 200
               ++
Sbjct: 109 THTNVS 114

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 19/140 (13%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           +F +++L  V+   FS F   E+L  LD+S    +  ++         L  L  L +  N
Sbjct: 405 DFQHSTLKRVT--EFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGN 458

Query: 136 HFNDSILPY-LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------L 183
            F D+ L        +LT L L +  +E   +      L  LQLL++             
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 184 ANLTNLKTLDLRDCGITTIQ 203
             L +L TLD     I T +
Sbjct: 518 NQLYSLSTLDCSFNRIETSK 537

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S+N    +S    + F   EELQ LD   +  +   E  A+    SL++L  L++   
Sbjct: 382 DLSFNGAIIMS----ANFMGLEELQHLDFQHSTLKRVTEFSAF---LSLEKLLYLDISYT 434

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LA 184
           +           L SL TL +  N+ + +      +N  NL  LDL              
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 185 NLTNLKTLDLRDCGITTI 202
            L  L+ L++    +  +
Sbjct: 495 TLHRLQLLNMSHNNLLFL 512

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 68  LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQL 127
           + + T   + S+N L  +       F  F ELQ LDLS    E   +     +   L  L
Sbjct: 30  IPSSTKNIDLSFNPLKILK---SYSFSNFSELQWLDLSRCEIETIED----KAWHGLHHL 82

Query: 128 KILNLEANHFNDSILPYLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQL------- 178
             L L  N          + L SL  L+  E  +    S  I  L  L+ L +       
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 179 --LDLRLANLTNLKTLDLRDCGITTIQ 203
             L    +NLTNL  +DL    I TI 
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTIT 169

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 19/126 (15%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
           +H    L +L L+ N  + F       S   L  L+ L              +  LI+L 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLK----TLDLRDC 197
            L +  N I   +     SNL NL  +DL            L  L        +LD+   
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 198 GITTIQ 203
            I  IQ
Sbjct: 192 PIDFIQ 197

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 11/132 (8%)

Query: 78  SYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHF 137
            +     + +   S+     ++   +  L     F ++        L  +  ++L     
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI--VKFHCLANVSAMSLAGVSI 297

Query: 138 NDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL------LDLRLANLTNLKT 191
               L  +       +L +    ++       L  L++L L      +  +   L +L  
Sbjct: 298 KY--LEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSY 354

Query: 192 LDLRDCGITTIQ 203
           LDL    ++   
Sbjct: 355 LDLSRNALSFSG 366

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           N ++N +    L  +  F     L  +DLS N  +    N       + +    L++  N
Sbjct: 134 NVAHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLR 195
             +  I       I L  L LR N    +     L NL  L +  L L    + + L++ 
Sbjct: 192 PID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 196 DCGI 199
           +  I
Sbjct: 251 EPSI 254

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 11/136 (8%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSN--GSLKQLKILNLE 133
               N      +           L    L L  F+       ++ +    L  + I    
Sbjct: 210 TLRGNFNSSNIMKTC--LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 134 ANHFNDSILPY--LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL-----ANL 186
             + ND        + L +++ + L   +I+    +      ++L ++  +L      +L
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 187 TNLKTLDLRDCGITTI 202
             LK+L L     +  
Sbjct: 328 PFLKSLTLTMNKGSIS 343

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 24/124 (19%), Positives = 34/124 (27%), Gaps = 22/124 (17%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN--DSILPYLNTLIS 150
                 L+SL L++N     +         +L  L  L+L  N  +             S
Sbjct: 324 TLDLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 151 LTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCG 198
           L  L L  N             L  LQ LD +              +L  L  LD+    
Sbjct: 378 LRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 199 ITTI 202
               
Sbjct: 436 TKID 439

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 23/141 (16%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
             + N +      +   F     L++L                   G L  LK LN+  N
Sbjct: 86  ILTGNPI---QSFSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHN 138

Query: 136 HFNDSILP-YLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLA---------- 184
             +   LP Y + L +L  + L  N I+   T+  L  LR    ++L L           
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197

Query: 185 ----NLTNLKTLDLRDCGITT 201
                   L  L LR    ++
Sbjct: 198 DQAFQGIKLHELTLRGNFNSS 218

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
             + NS    +L N   F     L  LDLS    E            +L +L++LN+  N
Sbjct: 454 KMAGNSFKDNTLSNV--FANTTNLTFLDLSKCQLEQISW----GVFDTLHRLQLLNMSHN 507

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           +       + N L SL+TL    N IE S+        ++L   +L 
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-ILQHFPKSLAFFNLT 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 19/139 (13%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           +F +++L  +S   FS+F     L  LD+S       +          L  L++L +  N
Sbjct: 402 DFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGN 455

Query: 136 HFNDSILPY-LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------L 183
            F ++ LP     L +LT L L +  +E   +    ++L +LQ+L++             
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 184 ANLTNLKTLDLRDCGITTI 202
             L +L+ LD     I T 
Sbjct: 515 KCLNSLQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 18/139 (12%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S+N +  +S    S F   E+L+ LD   +  +   E   +    SL+ L  L++   
Sbjct: 379 DLSFNGVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHT 431

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LA 184
           H   +     N L SL  L +  N+ + +   +  + LRNL  LDL              
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 185 NLTNLKTLDLRDCGITTIQ 203
           +L++L+ L++      ++ 
Sbjct: 492 SLSSLQVLNMSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 20/140 (14%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S N L      + S F     L+ LDLS N       N        L+QL+ L+ + +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHS 406

Query: 136 HFNDSILPY-LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------ 182
           +           +L +L  L +   +   +      + L +L++L +             
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 183 LANLTNLKTLDLRDCGITTI 202
              L NL  LDL  C +  +
Sbjct: 466 FTELRNLTFLDLSQCQLEQL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
            ++LDLS N            S  S  +L++L+L              +L  L+TLIL  
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203
           N I+    +   S L +LQ L              + +L  LK L++    I + +
Sbjct: 86  NPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 7/122 (5%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S   +  +       +     L +L L+ N  +         +   L  L+ L     
Sbjct: 58  DLSRCEIQTIE---DGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVET 110

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLR 195
           +        +  L +L  L +  N I+  +  E  SNL NL+ LDL    + ++   DLR
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 196 DC 197
             
Sbjct: 171 VL 172

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 28/140 (20%), Positives = 39/140 (27%), Gaps = 25/140 (17%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
            F    L         LF+    + S  L     E                 + L L   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV------KDFSYNFGWQHLELVNC 314

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------- 182
            F       L +L  LT    +  N           +L +L+ LDL              
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 183 LANLTNLKTLDLRDCGITTI 202
               T+LK LDL   G+ T+
Sbjct: 369 DFGTTSLKYLDLSFNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           N ++N +    L  +  F     L+ LDLS N  +  Y       +        L+L  N
Sbjct: 130 NVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTL 192
             N  I P     I L  L LR N    +     +  L  L++  L L    N   L
Sbjct: 188 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 11/136 (8%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEG--FYENRAYDSNGSLKQLKILNLE 133
                       +        E L +L +         +Y +   D    L  +   +L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 134 ANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL------ANLT 187
           +       +   +       L L             L +L+ L     +        +L 
Sbjct: 291 SVTIER--VKDFSYNFGWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNAFSEVDLP 347

Query: 188 NLKTLDLRDCGITTIQ 203
           +L+ LDL   G++   
Sbjct: 348 SLEFLDLSRNGLSFKG 363

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 12/137 (8%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSN--GSLKQLKILNLE 133
               N      +           L+   L L  F        +D +    L  L I    
Sbjct: 206 TLRNNFDSLNVMKTC--IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 134 ANHFNDS---ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL-----AN 185
             + +     I+   N L ++++  L    IE  +        ++L+L++ +        
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 186 LTNLKTLDLRDCGITTI 202
           L +LK L          
Sbjct: 324 LKSLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 20/141 (14%), Positives = 39/141 (27%), Gaps = 18/141 (12%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S N +  +    F        L  L L  N                L+  +++  E  
Sbjct: 183 DLSLNPMNFIQPGAFKEIR----LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 136 HFNDSILPYLNTLISLTTLILRENNIE-----GSRTIEGLSNLRNLQLLDLR-------- 182
           +  +      + L  L  L + E  +          I+  + L N+    L         
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 183 -LANLTNLKTLDLRDCGITTI 202
             +     + L+L +C     
Sbjct: 299 DFSYNFGWQHLELVNCKFGQF 319

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
             + NS     L +   F     L  LDLS    E      +  +  SL  L++LN+  N
Sbjct: 451 KMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHN 504

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           +F          L SL  L    N+I  S+  E      +L  L+L 
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 21/142 (14%)

Query: 75  FNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134
            N   +  F +S    + FH F  LQ LDL+                  L  LK L L A
Sbjct: 259 INLQKHYFFNIS---SNTFHCFSGLQELDLTATHLSELP-----SGLVGLSTLKKLVLSA 310

Query: 135 NHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------ 182
           N F +      +   SLT L ++ N          L NL NL+ LDL             
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 183 -LANLTNLKTLDLRDCGITTIQ 203
            L NL++L++L+L      +++
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLK 392

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 34/147 (23%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 68  LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQL 127
           L N T    FS+N L  +     + F     L  LDL+       +E    D+  S  +L
Sbjct: 31  LPNSTECLEFSFNVLPTI---QNTTFSRLINLTFLDLTRCQIYWIHE----DTFQSQHRL 83

Query: 128 KILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----- 182
             L L AN         L+   +L  L   +  I        L N + L+ L L      
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHIS 142

Query: 183 ------LANLTNLKTLDLRDCGITTIQ 203
                       LK LD ++  I  + 
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLS 169

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 26/138 (18%), Positives = 40/138 (28%), Gaps = 15/138 (10%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           +   N+               E L+ LDLS +  E            +L  L+ LNL  N
Sbjct: 331 SIKGNTKRLELGTGC--LENLENLRELDLSHDDIETSDCCN--LQLRNLSHLQSLNLSYN 386

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LA 184
                          L  L L    ++         NL  L++L+L              
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 185 NLTNLKTLDLRDCGITTI 202
            L  L+ L+L+       
Sbjct: 447 GLPALQHLNLQGNHFPKG 464

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 21/143 (14%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S++ +      N         LQSL+LS N            +     QL++L+L   
Sbjct: 356 DLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLKTE----AFKECPQLELLDLAFT 410

Query: 136 HFNDSILPY-LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------ 182
                        L  L  L L  + ++ S   +    L  LQ L+L+            
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 183 --LANLTNLKTLDLRDCGITTIQ 203
             L  L  L+ L L  C +++I 
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSID 492

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           N SYN    +       F    +L+ LDL+    +       +    +L  LK+LNL  +
Sbjct: 382 NLSYNEPLSLKT---EAFKECPQLELLDLAFTRLKVKDAQSPF---QNLHLLKVLNLSHS 435

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGS--RTIEGLSNLRNLQLLDLR----------- 182
             + S     + L +L  L L+ N+      +    L  L  L++L L            
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 183 LANLTNLKTLDLRDCGITTIQ 203
             +L  +  +DL    +T+  
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSS 516

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 16/137 (11%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           NF       V           + L          E    + A         ++ +NL+ +
Sbjct: 208 NFGGTQNLLVIFKGLK-NSTIQSLWLGTFEDMDDEDI--SPAVFEGLCEMSVESINLQKH 264

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LA 184
           +F +      +    L  L L   ++  S    GL  L  L+ L L             +
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 185 NLTNLKTLDLRDCGITT 201
           N  +L  L ++      
Sbjct: 323 NFPSLTHLSIKGNTKRL 339

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 17/132 (12%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           N S++ L    + +  LF     LQ L+L  N F      +  +S  +L +L+IL L   
Sbjct: 431 NLSHSLL---DISSEQLFDGLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFC 486

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LA 184
             +        +L  +  + L  N +  S   E LS+L+ +  L+L            L 
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 185 NLTNLKTLDLRD 196
            L+  +T++LR 
Sbjct: 545 ILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 17/138 (12%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           N + N + G+    F         QSL+                 N +++ L +   E  
Sbjct: 185 NLNGNDIAGIEPGAFDSAV----FQSLNFGGTQNLLVIFKG--LKNSTIQSLWLGTFEDM 238

Query: 136 HFND--SILPYLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQL-------LDLRLA 184
              D    +      +S+ ++ L+++      S T    S L+ L L       L   L 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 185 NLTNLKTLDLRDCGITTI 202
            L+ LK L L       +
Sbjct: 299 GLSTLKKLVLSANKFENL 316

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 20/140 (14%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
            F    +   S ++F   H  + L+SL L  N                 ++LK+L+ + N
Sbjct: 111 FFIQTGI---SSIDFIPLHNQKTLESLYLGSNHISSIKL----PKGFPTEKLKVLDFQNN 163

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL------------ 183
             +      +++L   T L L  N  + +    G  +    Q L+               
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 184 -ANLTNLKTLDLRDCGITTI 202
            + + +L      D     I
Sbjct: 224 NSTIQSLWLGTFEDMDDEDI 243

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 22/143 (15%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
               N +   S +      P E+L+ LD   NA     +    +   SL+Q   L+L  N
Sbjct: 135 YLGSNHI---SSIKLPKGFPTEKLKVLDFQNNAIHYLSK----EDMSSLQQATNLSLNLN 187

Query: 136 H-FNDSILPYLNTLISLTTLILRENNIEGSR----TIEGLSNLRNLQLLDLRLANLT--- 187
                 I P         +L                   + +L      D+   +++   
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 188 -------NLKTLDLRDCGITTIQ 203
                  ++++++L+      I 
Sbjct: 248 FEGLCEMSVESINLQKHYFFNIS 270

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 2e-10
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
           F E    +L   +           +   L  +  +    +      +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203
           L  N +     I+ L+NL+NL  L L          L +L  LK+L L   GI+ I 
Sbjct: 72  LNGNKL---TDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 125

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
            LK+LK L+LE N  +D  +  L  L  L +L L  N I     I  LS L  L  L L 
Sbjct: 107 DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLE 161

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                    LA LT L+ L L    I+ ++
Sbjct: 162 DNQISDIVPLAGLTKLQNLYLSKNHISDLR 191

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
            L QL+ L L  N   D  +  L+ L  L TL L +N I     I  L+ L  LQ L L 
Sbjct: 129 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLS 183

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                    LA L NL  L+L         
Sbjct: 184 KNHISDLRALAGLKNLDVLELFSQECLNKP 213

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 22/115 (19%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
                +L+SL L  N                L +L  L+LE N  +D  +  L  L  L 
Sbjct: 127 LVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQ 178

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDL-----------RLANLTNLKTLDLRD 196
            L L +N+I     +  L+ L+NL +L+L             +NL    T+   D
Sbjct: 179 NLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 8/86 (9%), Positives = 24/86 (27%), Gaps = 14/86 (16%)

Query: 127 LKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---- 182
           +      +       +   +         L++ ++         + L ++  +       
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 183 -----LANLTNLKTLDLRDCGITTIQ 203
                +  L N+  L L    +T I+
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLTDIK 81

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 6e-10
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 19/125 (15%)

Query: 87  LMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN 146
           + + S      ++ SL+L  N               ++  L  L +  +   D  +  + 
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKD--VTPIA 174

Query: 147 TLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDC 197
            L  L +L L  N I     I  L++L +L               +AN+T L +L + + 
Sbjct: 175 NLTDLYSLSLNYNQI---EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231

Query: 198 GITTI 202
            IT +
Sbjct: 232 KITDL 236

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 20/116 (17%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
             E     L   +           +   L+ +  L +         +  +  L +L  L 
Sbjct: 21  LAEGIRAVLQKASVTDV------VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
           L  N I     I  LSNL  L  L +          L NLTNL+ L L +  I+ I
Sbjct: 73  LNGNQITD---ISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI 125

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 20/113 (17%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L  L ++ +  +            +L  L  L+L  N   D  +  L +L SL       
Sbjct: 157 LNYLTVTESKVKDV------TPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYV 208

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
           N I     I  ++N+  L  L +          LANL+ L  L++    I+ I
Sbjct: 209 NQITD---ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 20/119 (16%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
                 L      +N               ++ +L  L +  N   D  L  L  L  LT
Sbjct: 195 LASLTSLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITD--LSPLANLSQLT 246

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
            L +  N I     I  + +L  L++L++          L NL+ L +L L +  +   
Sbjct: 247 WLEIGTNQIS---DINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE 302

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L SL L+ N  E            SL  L       N   D  +  +  +  L +L +  
Sbjct: 179 LYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGN 230

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203
           N I     +  L+NL  L  L++          + +LT LK L++    I+ I 
Sbjct: 231 NKITD---LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS 281

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 20/131 (15%)

Query: 81  SLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS 140
            L   S+ +       E +  L ++                  L  L+ LNL  N   D 
Sbjct: 28  VLQKASVTDVVTQEELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITD- 80

Query: 141 ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKT 191
            +  L+ L+ LT L +  N I     I  L NL NL+ L L          LANLT + +
Sbjct: 81  -ISPLSNLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISPLANLTKMYS 136

Query: 192 LDLRDCGITTI 202
           L+L      + 
Sbjct: 137 LNLGANHNLSD 147

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 86  SLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL 145
            + + S       L+ L L+ +               +L ++  LNL ANH N S L  L
Sbjct: 99  KITDISALQNLTNLRELYLNEDNISDI------SPLANLTKMYSLNLGANH-NLSDLSPL 151

Query: 146 NTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------LANLTNLKTLDLRDCGI 199
           + +  L  L + E+ ++    I  L++L +L L   +      LA+LT+L         I
Sbjct: 152 SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI 211

Query: 200 TTIQ 203
           T I 
Sbjct: 212 TDIT 215

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 32/116 (27%), Positives = 42/116 (36%), Gaps = 22/116 (18%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L SL +  N               +L QL  L +  N  +D  +  +  L  L  L +  
Sbjct: 223 LNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ 203
           N I     I  L+NL  L  L L            +  LTNL TL L    IT I+
Sbjct: 275 NQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 20/113 (17%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
             +L                  +  L +     L+     D  +     L S+T L++  
Sbjct: 2   AATLATLPA------PINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
             +    +I+G+  L NL+ L+L          L+NL  L  L +    IT I
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI 103

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 18/111 (16%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L  L++  N           ++   L +LK+LN+ +N  +D  +  LN L  L +L L  
Sbjct: 245 LTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGIT 200
           N +     +E +  L NL  L L          LA+L+ + + D  +  I 
Sbjct: 297 NQLGNE-DMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 87  LMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN 146
           + + +      +L+ L++  N               +L QL  L L  N   +  +  + 
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 147 TLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL 181
            L +LTTL L +N+I     I  L++L  +   D 
Sbjct: 309 GLTNLTTLFLSQNHI---TDIRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 14/86 (16%)

Query: 127 LKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---- 182
              L       N   +     L      +L++ ++     +     L ++  L +     
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV 56

Query: 183 -----LANLTNLKTLDLRDCGITTIQ 203
                +  LTNL+ L+L    IT I 
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQITDIS 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 27/116 (23%), Positives = 37/116 (31%), Gaps = 20/116 (17%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
             E     L               S   L Q+  L  +        +  +  L +LT + 
Sbjct: 23  LAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
              N +     I  L NL  L  + +          LANLTNL  L L +  IT I
Sbjct: 75  FSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 127

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 86  SLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL 145
            L +         L  LDL+ N                L +L  L L AN  ++  +  L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISN--ISPL 283

Query: 146 NTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRD 196
             L +LT L L EN +E    I  +SNL+NL  L L          +++LT L+ L   +
Sbjct: 284 AGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 340

Query: 197 CGITTI 202
             ++ +
Sbjct: 341 NKVSDV 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 20/123 (16%)

Query: 89  NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL 148
           N S       L +L+L+ N  E            +LK L  L L  N+ +D  +  +++L
Sbjct: 279 NISPLAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISD--ISPVSSL 330

Query: 149 ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGI 199
             L  L    N +     +  L+NL N+  L            LANLT +  L L D   
Sbjct: 331 TKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 387

Query: 200 TTI 202
           T  
Sbjct: 388 TNA 390

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 20/113 (17%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L+ LD+S N                L  L+ L    N  +D  +  L  L +L  L L  
Sbjct: 179 LERLDISSNKVSDI------SVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 230

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
           N ++    I  L++L NL  LDL          L+ LT L  L L    I+ I
Sbjct: 231 NQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 14/90 (15%)

Query: 122 GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL 181
            +L  L+ L++ +N  +D  +  L  L +L +LI   N I     I  L  L NL  L L
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD---ITPLGILTNLDELSL 228

Query: 182 R---------LANLTNLKTLDLRDCGITTI 202
                     LA+LTNL  LDL +  I+ +
Sbjct: 229 NGNQLKDIGTLASLTNLTDLDLANNQISNL 258

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 21/114 (18%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L  L L  N           D   +L  L  L L +N  +D  +  L+ L SL  L    
Sbjct: 114 LTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG- 164

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203
           N +     ++ L+NL  L+ LD+          LA LTNL++L   +  I+ I 
Sbjct: 165 NQV---TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 215

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 14/90 (15%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           +L +     L   +  D        L  +TTL      I+   +I+G+  L NL  ++  
Sbjct: 22  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 76

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                    L NLT L  + + +  I  I 
Sbjct: 77  NNQLTDITPLKNLTKLVDILMNNNQIADIT 106

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 21/113 (18%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L  L+LS N            +   L  L+ L+        + L  L  L +L  L +  
Sbjct: 136 LNRLELSSNTISDI------SALSGLTSLQQLSF---GNQVTDLKPLANLTTLERLDISS 186

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
           N +     I  L+ L NL+ L            L  LTNL  L L    +  I
Sbjct: 187 NKV---SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 236

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 20/105 (19%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L  ++ S N               +L +L  + +  N   D  +  L  L +LT L L  
Sbjct: 70  LTQINFSNNQLTDI------TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN 121

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDL 194
           N I     I+ L NL NL  L+L          L+ LT+L+ L  
Sbjct: 122 NQITD---IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 122 GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL 181
           G L    I        N   +     L      +L + N+  + +   L  +  LQ   L
Sbjct: 1   GPLGSATITQ--DTPINQ--IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL 56

Query: 182 R------LANLTNLKTLDLRDCGITTI 202
                  +  L NL  ++  +  +T I
Sbjct: 57  GIKSIDGVEYLNNLTQINFSNNQLTDI 83

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 9e-10
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 33/132 (25%)

Query: 91  SLFHPFEELQSLDLS---------LNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141
             F+    L+ LDL            AFEG            L  L+ LNL   +  +  
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEG------------LSNLRYLNLAMCNLRE-- 199

Query: 142 LPYLNTLISLTTLILRENNIE--GSRTIEGLSNLRNLQLLDLRL--------ANLTNLKT 191
           +P L  LI L  L L  N++      + +GL +L+ L ++  ++         NL +L  
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 192 LDLRDCGITTIQ 203
           ++L    +T + 
Sbjct: 260 INLAHNNLTLLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 31/146 (21%), Positives = 44/146 (30%), Gaps = 38/146 (26%)

Query: 78  SYNSLFGVSLMNFSLFHPFEELQSLDLSLN--------AFEGFYENRAYDSNGSLKQLKI 129
             N L  +       F    +L+ L L  N        AF              +  L+ 
Sbjct: 120 FDNRLTTIPN---GAFVYLSKLKELWLRNNPIESIPSYAFNR------------IPSLRR 164

Query: 130 LNLEANHFNDSILPY-LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------ 182
           L+L        I       L +L  L L   N+   R I  L+ L  L  LDL       
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL---REIPNLTPLIKLDELDLSGNHLSA 221

Query: 183 -----LANLTNLKTLDLRDCGITTIQ 203
                   L +L+ L +    I  I+
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIE 247

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 17/120 (14%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISLTTL 154
               + L+L  N  +    N    S   L+ L+IL L  NH   +I     N L +L TL
Sbjct: 63  STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTL 117

Query: 155 ILRENNIEG--SRTIEGLSNLRNLQLLDLRL--------ANLTNLKTLDLRDC-GITTIQ 203
            L +N +    +     LS L+ L L +  +          + +L+ LDL +   ++ I 
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 23/150 (15%)

Query: 74  KFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAY---DSNGSLKQLKIL 130
             +F++N L    + N         + ++D S N               +      +  +
Sbjct: 381 NLSFAHNKL--KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 131 NLEANHFNDSILPYLNTLISLTTLILRENNIEG------SRTIEGLSNLRNLQLLDL--- 181
           NL  N  +       +T   L+++ L  N +            E   N   L  +DL   
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 182 ---------RLANLTNLKTLDLRDCGITTI 202
                    R   L  L  +DL     +  
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 122 GSLKQLKILNLEANHF--------NDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL 173
            +L +++++N+  N          +   L        +  + +  NN++       L  +
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 174 RNLQLLDLR----------LANLTNLKTLDLRDCGITTI 202
           + L +L+              +   L +L+L    IT I
Sbjct: 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI 368

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 24/147 (16%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSN---GSLKQLKILNL 132
           N S N +         LF     L S++L  N      +N   D N    +   L  ++L
Sbjct: 439 NLSNNQISKFPK---ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 133 EANHFNDSILP--YLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR------- 182
             N     +       TL  L  + L  N+           S L+   + + R       
Sbjct: 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 183 -------LANLTNLKTLDLRDCGITTI 202
                  +    +L  L +    I  +
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 25/177 (14%)

Query: 35  LTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFH 94
             +W  +     D      GV  N+  R V  L L              G          
Sbjct: 57  GANW--NFNKELDMWGAQPGVSLNSNGR-VTGLSL--------EGFGASGRVPDAIGQLT 105

Query: 95  PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL--NTLISLT 152
              EL+ L L  +  +            +    +       H+  + + Y        L 
Sbjct: 106 ---ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGIT 200
              +  +  + S        L++ Q+  L          +  LT L+   + +    
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 25/145 (17%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
              YN+L    +   SL    ++L  L+   N  EG        + GS  +L  LNL  N
Sbjct: 311 YIGYNNLKTFPVET-SLQK-MKKLGMLECLYNQLEGKLP-----AFGSEIKLASLNLAYN 363

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------- 182
              +    +      +  L    N ++    I    ++  +  +D               
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 183 -----LANLTNLKTLDLRDCGITTI 202
                     N+ +++L +  I+  
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKF 448

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 22/147 (14%)

Query: 74  KFNFSYNSLFGVSLMNFSLFHPFE-----ELQSLDLSLNAFEGFYENRAYDSNGSLKQLK 128
             N + N       +        +     ++Q + +  N  + F       S   +K+L 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF---PVETSLQKMKKLG 333

Query: 129 ILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------ 182
           +L    N      LP   + I L +L L  N I              ++ L         
Sbjct: 334 MLECLYNQLE-GKLPAFGSEIKLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKY 391

Query: 183 ------LANLTNLKTLDLRDCGITTIQ 203
                   +++ +  +D     I ++ 
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVD 418

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 21/146 (14%)

Query: 74  KFNFSYNSLFGVSLMNFSL----FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKI 129
             N   N L  +   +       F     L S+DL  N      ++       +L  L  
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF---RATTLPYLVG 517

Query: 130 LNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG-----LSNLRNLQLLDLR-- 182
           ++L  N F+           +L    +R                 ++   +L  L +   
Sbjct: 518 IDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 183 ------LANLTNLKTLDLRDCGITTI 202
                      N+  LD++D    +I
Sbjct: 577 DIRKVNEKITPNISVLDIKDNPNISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 16/142 (11%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 65  MHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSL 124
           M        + ++    +      +FS      +L    ++ +  +   +     S+   
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFS------DLIKDCINSDPQQKSIKK----SSRIT 182

Query: 125 KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG-----LSNLRNLQLL 179
            +   +   +N+    +   +  L  L    +  +        E          +  +  
Sbjct: 183 LKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 180 DLRLANLTNLKTLDLRDCGITT 201
           DL+  NL +L  +++ +C   T
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLT 263

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 12/124 (9%), Positives = 31/124 (25%), Gaps = 31/124 (25%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L+   +  + F               +  +  N E      +     + L  LT + +  
Sbjct: 208 LRQFYMGNSPFVAE---------NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 159 NNIEGSRTI-EGLSNLRNLQLLDLR-------------------LANLTNLKTLDLRDCG 198
                   +   L  L  +QL+++                          ++ + +    
Sbjct: 259 CPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 199 ITTI 202
           + T 
Sbjct: 317 LKTF 320

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 33/132 (25%)

Query: 91  SLFHPFEELQSLDLS---------LNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141
             F+    L  LDL            AFEG            L  LK LNL   +  D  
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEG------------LFNLKYLNLGMCNIKD-- 210

Query: 142 LPYLNTLISLTTLILRENNIE--GSRTIEGLSNLRNLQLLDLRL--------ANLTNLKT 191
           +P L  L+ L  L +  N+       +  GLS+L+ L +++ ++          L +L  
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 192 LDLRDCGITTIQ 203
           L+L    ++++ 
Sbjct: 271 LNLAHNNLSSLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 38/146 (26%)

Query: 78  SYNSLFGVSLMNFSLFHPFEELQSLDLSLN--------AFEGFYENRAYDSNGSLKQLKI 129
             N L   +++    F    +L+ L L  N        AF              +  L  
Sbjct: 131 FDNWL---TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR------------VPSLMR 175

Query: 130 LNLEANHFNDSILPY-LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------ 182
           L+L      + I       L +L  L L   NI   + +  L+ L  L+ L++       
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFPE 232

Query: 183 -----LANLTNLKTLDLRDCGITTIQ 203
                   L++LK L + +  ++ I+
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIE 258

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 34/129 (26%), Positives = 47/129 (36%), Gaps = 31/129 (24%)

Query: 93  FHPFEELQSLDLSLN--------AFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY 144
           F+    L +L+L  N        AFE             L +L+ L L  N    SI  Y
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEY------------LSKLRELWLRNNPIE-SIPSY 165

Query: 145 -LNTLISLTTLILRENN-IE--GSRTIEGLSNLRNLQLLDLRL------ANLTNLKTLDL 194
             N + SL  L L E   +E       EGL NL+ L L    +        L  L+ L++
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225

Query: 195 RDCGITTIQ 203
                  I+
Sbjct: 226 SGNHFPEIR 234

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 35/145 (24%), Positives = 48/145 (33%), Gaps = 43/145 (29%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANH--------FNDSILPYLNT 147
               + L+L  N  +    +    +   L  L++L L  N         FN   L  LNT
Sbjct: 74  PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNG--LASLNT 127

Query: 148 L------------------ISLTTLILRENNIE--GSRTIEGLSNLRNLQLLDLR----- 182
           L                    L  L LR N IE   S     + +L  L L +L+     
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 183 ----LANLTNLKTLDLRDCGITTIQ 203
                  L NLK L+L  C I  + 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMP 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 30/127 (23%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISL 151
           F     L+ L+L +         +   +   L  L+ L +  NHF   I P   + L SL
Sbjct: 192 FEGLFNLKYLNLGMCNI------KDMPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSL 244

Query: 152 TTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANLTNLKTLDLR--- 195
             L +  + +     IE      L +L  L+L               L  L  L L    
Sbjct: 245 KKLWVMNSQV---SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 196 ---DCGI 199
              DC I
Sbjct: 302 WNCDCDI 308

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 87  LMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN 146
           + + +      ++  L+LS N  +         +   L+ +K L+L +    D  +  L 
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITD--VTPLA 126

Query: 147 TLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDC 197
            L +L  L L  N I     I  L+ L NLQ L +          LANL+ L TL   D 
Sbjct: 127 GLSNLQVLYLDLNQI---TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 198 GITTIQ 203
            I+ I 
Sbjct: 184 KISDIS 189

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 8e-09
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 20/126 (15%)

Query: 87  LMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN 146
           L N S     + +++LDL+                  L  L++L L+ N   +  +  L 
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITN--ISPLA 148

Query: 147 TLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDC 197
            L +L  L +    +     +  L+NL  L  L            LA+L NL  + L++ 
Sbjct: 149 GLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN 205

Query: 198 GITTIQ 203
            I+ + 
Sbjct: 206 QISDVS 211

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
                 +    +            +   L  +  L+          +  +  L +L  L 
Sbjct: 18  LANAIKIAAGKSNVTDT------VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203
           L++N I     +  L NL  +  L+L          +A L ++KTLDL    IT + 
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           +L     +    ++  D        L  +TTL      +    TIEG+  L NL  L+L+
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                    L NLT +  L+L    +  + 
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVS 101

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 122 GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL 181
             L  L+ L++     +D  L  L  L  LTTL   +N I     I  L++L NL  + L
Sbjct: 148 AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS---DISPLASLPNLIEVHL 202

Query: 182 R---------LANLTNLKTLDLRDCGITTIQ 203
           +         LAN +NL  + L +  IT   
Sbjct: 203 KNNQISDVSPLANTSNLFIVTLTNQTITNQP 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 12/68 (17%)

Query: 145 LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLR 195
              L +   +   ++N+         ++L  +  L            +  L NL  L+L+
Sbjct: 15  DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK 71

Query: 196 DCGITTIQ 203
           D  IT + 
Sbjct: 72  DNQITDLA 79

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           LQ L +                  +L +L  L  + N  +D  +  L +L +L  + L+ 
Sbjct: 153 LQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTL 192
           N I     +  L+N  NL ++ L    +TN    
Sbjct: 205 NQIS---DVSPLANTSNLFIVTLTNQTITNQPVF 235

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 18/138 (13%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S+N +  +S    S F   E+L+ LD   +  +   E   + S   L+ L  L++   
Sbjct: 379 DLSFNGVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLS---LRNLIYLDISHT 431

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LA 184
           H   +     N L SL  L +  N+ + +   +  + LRNL  LDL              
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 185 NLTNLKTLDLRDCGITTI 202
           +L++L+ L++    + ++
Sbjct: 492 SLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 23/135 (17%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           +F +++L    +  FS+F     L  LD+S       +          L  L++L +  N
Sbjct: 402 DFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGN 455

Query: 136 HFNDSILPY-LNTLISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR---------- 182
            F ++ LP     L +LT L L +  +E    +     ++L +LQ+L++           
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLE---QLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 183 -LANLTNLKTLDLRD 196
               LT+L+ + L  
Sbjct: 513 IFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 24/143 (16%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S N L      + S       L+ LDLS N       N        L+QL+ L+ + +
Sbjct: 353 DLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFL-----GLEQLEHLDFQHS 406

Query: 136 HFNDSILPYLNT---LISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------- 182
           +     +   +    L +L  L +   +   +      + L +L++L +           
Sbjct: 407 NL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 183 --LANLTNLKTLDLRDCGITTIQ 203
                L NL  LDL  C +  + 
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLS 486

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 45/147 (30%), Positives = 59/147 (40%), Gaps = 18/147 (12%)

Query: 68  LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQL 127
           L   T   + S+N L  +       F  F ELQ LDLS    +   E+ AY    SL  L
Sbjct: 26  LPFSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTI-EDGAYQ---SLSHL 78

Query: 128 KILNLEANHFNDSILPYLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQL------- 178
             L L  N      L   + L SL  L+  E N+    +  I  L  L+ L +       
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 179 --LDLRLANLTNLKTLDLRDCGITTIQ 203
             L    +NLTNL+ LDL    I +I 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIY 165

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 19/126 (15%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
           +     L +L L+ N  +      A  +   L  L+ L     +        +  L +L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLK----TLDLRDC 197
            L +  N I+  +  E  SNL NL+ LDL            L  L  +     +LDL   
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 198 GITTIQ 203
            +  IQ
Sbjct: 188 PMNFIQ 193

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 29/140 (20%), Positives = 44/140 (31%), Gaps = 25/140 (17%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
            F    L         LF+    + S  L     E     + +  N   + L+++N +  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFG 317

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------- 182
            F    L       SL  L    N            +L +L+ LDL              
Sbjct: 318 QFPTLKLK------SLKRLTFTSNKG---GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 183 LANLTNLKTLDLRDCGITTI 202
               T+LK LDL   G+ T+
Sbjct: 369 DFGTTSLKYLDLSFNGVITM 388

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 39/150 (26%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLN--------AFEGFYENRAYDSNGSLKQL 127
           +F +++L    +  FS+F     L  LD+S           F G            L  L
Sbjct: 107 DFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------LSSL 152

Query: 128 KILNLEANHFNDSILPY-LNTLISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-- 182
           ++L +  N F ++ LP     L +LT L L +  +     +     ++L +LQ+L++   
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQVLNMSHN 209

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                       L +L+ LD     I T +
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 18/139 (12%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S+N +  +S    S F   E+L+ LD   +  +   E   + S   L+ L  L++   
Sbjct: 84  DLSFNGVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLS---LRNLIYLDISHT 136

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LA 184
           H   +     N L SL  L +  N+ + +   +  + LRNL  LDL              
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 185 NLTNLKTLDLRDCGITTIQ 203
           +L++L+ L++      ++ 
Sbjct: 197 SLSSLQVLNMSHNNFFSLD 215

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 23/122 (18%), Positives = 33/122 (27%), Gaps = 20/122 (16%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP--YLNTLISLTT 153
                 L+L  N  +             L QL  L+L +N  +             SL  
Sbjct: 27  PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 154 LILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITT 201
           L L  N +           L  L+ LD +              +L NL  LD+       
Sbjct: 83  LDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 202 IQ 203
             
Sbjct: 141 AF 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 69  LNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLK 128
           LN T +   S+N +  V+    S F   E+LQ L+L         +  A+    +L  L+
Sbjct: 23  LNTTERLLLSFNYIRTVT---ASSFPFLEQLQLLELGSQYTPLTIDKEAFR---NLPNLR 76

Query: 129 ILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG-LSNLRNLQLLDLR----- 182
           IL+L ++            L  L  L L    +  +   +G   NL+ L  LDL      
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 183 -------LANLTNLKTLDLRDCGITTIQ 203
                     L +LK++D     I  + 
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVC 164

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 9e-08
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 31/156 (19%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD----SNGSLKQLKILN 131
           +   N +  +       F   E+LQ+LDL  NA    +   +      S   L  L  +N
Sbjct: 344 DLQKNHIAIIQD---QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 132 LEANHF--------NDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR- 182
           L AN          N  IL +L  +  L  LIL +N        +  S   +L+ L L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 183 ---------------LANLTNLKTLDLRDCGITTIQ 203
                             L++L+ L L    + ++ 
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 24/141 (17%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
            + + +L         +       + L LS N            S   L+QL++L L + 
Sbjct: 10  FYRFCNLT-------QVPQVLNTTERLLLSFNYIRTVTA----SSFPFLEQLQLLELGSQ 58

Query: 136 HFNDSILPY-LNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQLLDLRL--------- 183
           +   +I       L +L  L L  + I        +GL +L  L+L    L         
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 184 -ANLTNLKTLDLRDCGITTIQ 203
             NL  L  LDL    I ++ 
Sbjct: 119 FRNLKALTRLDLSKNQIRSLY 139

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 32/141 (22%), Positives = 46/141 (32%), Gaps = 18/141 (12%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S N L  + ++ F        LQ L L+ N F     ++          L+ L L  N
Sbjct: 407 HLSENRLENLDILYF--LLRVPHLQILILNQNRFSSCSGDQTP---SENPSLEQLFLGEN 461

Query: 136 HFNDSILPYLNT-----LISLTTLILRENNIEG--SRTIEGLSNLRNLQLLDLRLANL-- 186
               +    L       L  L  L L  N +          L+ LR L L   RL  L  
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 187 ----TNLKTLDLRDCGITTIQ 203
                NL+ LD+    +    
Sbjct: 522 NDLPANLEILDISRNQLLAPN 542

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 26/144 (18%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
             S N L  +  +N +          + LS N  E             +  L+IL L  N
Sbjct: 387 FLSGNKLVTLPKINLTA-------NLIHLSENRLEN---LDILYFLLRVPHLQILILNQN 436

Query: 136 HFNDSILPYL-NTLISLTTLILRENNIEGSRTIE----GLSNLRNLQLLDLR-------- 182
            F+        +   SL  L L EN ++ +   E        L +LQ+L L         
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496

Query: 183 ---LANLTNLKTLDLRDCGITTIQ 203
               ++LT L+ L L    +T + 
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTVLS 520

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 23/138 (16%)

Query: 80  NSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND 139
           N++      +  L H    +       +  +   +N    +  +   ++ L+L       
Sbjct: 226 NAISKSQAFSLILAH---HIMGAGFGFHNIKDPDQN--TFAGLARSSVRHLDLSHGFVF- 279

Query: 140 SILPY-LNTLISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LAN 185
           S+      TL  L  L L  N I     I       L NLQ+L+L               
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKIN---KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 186 LTNLKTLDLRDCGITTIQ 203
           L  +  +DL+   I  IQ
Sbjct: 337 LPKVAYIDLQKNHIAIIQ 354

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 23/151 (15%)

Query: 75  FNFSYNSLFGVSLMNF-SLFHPFEE--LQSLDLSLN--------AFEGFYENRAYDSNGS 123
           F+ + NSL+    +++    +PF    L+ LD+S N         F          S   
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 124 LKQLKILNLEANHFNDSILPYLNTL--ISLTTLILRENNIE--GSRTIEGLSNLRNLQLL 179
              +       ++  D        L   S+  L L    +    SR  E L +L+ L L 
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 180 DLRL--------ANLTNLKTLDLRDCGITTI 202
             ++          L NL+ L+L    +  +
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 29/155 (18%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLK--QLKILNLE 133
           +FS N +F V           + L    L+ N+                +   L+IL++ 
Sbjct: 154 DFSSNQIFLVCEHELEPLQ-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 134 ANHFNDSILPYLNTLIS------------LTTLILRENNIEG--SRTIEGLSNLRNLQLL 179
            N +   I    +  IS            +       +NI+     T  GL+   +++ L
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHL 271

Query: 180 DLR-----------LANLTNLKTLDLRDCGITTIQ 203
           DL               L +LK L+L    I  I 
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
            LK+LK L+LE N  +D  +  L  L  L +L L  N I     I  LS L  L  L L 
Sbjct: 110 DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLE 164

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                    LA LT L+ L L    I+ ++
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISDLR 194

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           +  +    NL+     D      N L S+  +I   ++I+   +++G+  L N+  L L 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                    LANL NL  L L +  +  + 
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLS 106

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
           F E    +L   +           +   L  +  +    +      +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203
           L  N +     I+ L+NL+NL  L L          L +L  LK+L L   GI+ I 
Sbjct: 75  LNGNKL---TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
            L QL+ L L  N   D  +  L+ L  L TL L +N I     I  L+ L  LQ L L 
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLS 186

Query: 183 ---------LANLTNLKTLDLRDCGITTIQ 203
                    LA L NL  L+L         
Sbjct: 187 KNHISDLRALAGLKNLDVLELFSQECLNKP 216

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 22/117 (18%)

Query: 98  ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR 157
           +L+SL L  N                L +L  L+LE N  +D  +  L  L  L  L L 
Sbjct: 135 QLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 186

Query: 158 ENNIEGSRTIEGLSNLRNLQLLDL-----------RLANLTNLKTLDLRDCGITTIQ 203
           +N+I     +  L+ L+NL +L+L             +NL    T+   D  + T +
Sbjct: 187 KNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND---------SILP 143
           +   ++L  ++L           +  D    L +L+ LN+  N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 144 YLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDL 194
             +T   +    +  NN+E       L  +  L LLD                 L  L L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL 602

Query: 195 RDCGITTI 202
               I  I
Sbjct: 603 DYNQIEEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 25/154 (16%), Positives = 41/154 (26%), Gaps = 21/154 (13%)

Query: 68  LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENR-AYDSNGSLKQ 126
             +      FS+N L    + N         + S+D S N       N      +     
Sbjct: 617 FTDQVEGLGFSHNKL--KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 127 LKILNLEANHFNDSILPYLNTLISLTTLILRENNIE------GSRTIEGLSNLRNLQLLD 180
              + L  N           T   ++T+IL  N +                N   L  +D
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 181 L------------RLANLTNLKTLDLRDCGITTI 202
           L            R   L  L  +D+     ++ 
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 26/147 (17%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEE------LQSLDLSLNAFEGFYENRAYDSNGSLKQLKI 129
           N + N     + +        ++      +Q   +  N  E F  +    S   + +L +
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS---ASLQKMVKLGL 577

Query: 130 LNLEANHFNDSILPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR------ 182
           L+   N      L    T + LT L L  N IE         +    ++ L         
Sbjct: 578 LDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDF--CAFTDQVEGLGFSHNKLKY 633

Query: 183 ------LANLTNLKTLDLRDCGITTIQ 203
                   ++  + ++D     I +  
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEG 660

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 24/134 (17%)

Query: 89  NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL 148
            F+  +   + +  +          E     S  +LK L  + L        +  +L  L
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 149 ISLTTLILRENNIEG--------SRTIEGLSNLRNLQLLDLR------------LANLTN 188
             L +L +  N            +R  +       +Q+  +             L  +  
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 189 LKTLDLRDCGITTI 202
           L  LD     +  +
Sbjct: 575 LGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 24/145 (16%)

Query: 74  KFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLE 133
            F   YN+L        +      +L  LD   N           ++ G+  +L  L L+
Sbjct: 552 IFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHL------EAFGTNVKLTDLKLD 603

Query: 134 ANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------- 182
            N   +    +      +  L    N ++    I    ++  +  +D             
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 183 -----LANLTNLKTLDLRDCGITTI 202
                     N  T+ L    I   
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKF 688

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 24/148 (16%), Positives = 41/148 (27%), Gaps = 26/148 (17%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSN---GSLKQLKILNL 132
             SYN +         LF     + ++ LS N      EN     +    +   L  ++L
Sbjct: 679 TLSYNEIQKFP---TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 133 EANHFNDSILP---YLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR------ 182
             N      L       TL  L+ + +  N            S L+   +   R      
Sbjct: 736 RFNKLTS--LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 183 --------LANLTNLKTLDLRDCGITTI 202
                   +    +L  L +    I  +
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 21/146 (14%)

Query: 74  KFNFSYNSLFGVSLMNFSL----FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKI 129
               S N +  +   +       +     L ++DL  N      ++       +L  L  
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA---TTLPYLSN 757

Query: 130 LNLEANHFND-----SILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-- 182
           +++  N F+           L             N I       G++   +L  L +   
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSN 816

Query: 183 ------LANLTNLKTLDLRDCGITTI 202
                       L  LD+ D    +I
Sbjct: 817 DIRKVDEKLTPQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 19/135 (14%)

Query: 81  SLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAY--DSNGSLKQLKILNLEANHFN 138
            L   ++       P ++   + L             +   +   L +L+I+    +   
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-- 459

Query: 139 DSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLT 187
                Y N  +              +      SNL++L  ++L            L +L 
Sbjct: 460 ---FTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

Query: 188 NLKTLDLRDCGITTI 202
            L++L++      + 
Sbjct: 516 ELQSLNIACNRGISA 530

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 11/121 (9%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL--IS 150
                EL+ L    ++          +        +  +    H+    L Y   L    
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 151 LTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITT 201
           L    +  N        +   +L++ Q+ +L          +  LT L+ +   +   T 
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 202 I 202
            
Sbjct: 463 D 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S N +    L N +    +  LQ+L LS N        +  +   +LK L  L++  N
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM--QKTGEILLTLKNLTSLDISRN 397

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL----ANLTNLKT 191
            F+  +         +  L L    I           L  L + +  L      L  L+ 
Sbjct: 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQE 455

Query: 192 LDLRDCGITTIQ 203
           L +    + T+ 
Sbjct: 456 LYISRNKLKTLP 467

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 19/148 (12%)

Query: 68  LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQL 127
           L       + S+N +   + +          LQ L L  +           D+  SL  L
Sbjct: 24  LTAAMKSLDLSFNKI---TYIGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSL 76

Query: 128 KILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----- 182
           + L+L  NH +     +   L SL  L L  N  +         NL NLQ L +      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 183 -------LANLTNLKTLDLRDCGITTIQ 203
                   A LT+L  L+++   +   Q
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQ 164

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           + S N L   S ++ S F P   L+ L+L  N ++       +    +L  L+ L +   
Sbjct: 80  DLSDNHL---SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF---PNLTNLQTLRIGNV 133

Query: 136 HFNDSILP-YLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQLLDLRL--------A 184
                I       L SL  L ++  ++    S++++ + ++ +L L              
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 185 NLTNLKTLDLRDCGITTIQ 203
            L++++ L+LRD  +   Q
Sbjct: 194 ILSSVRYLELRDTNLARFQ 212

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
               + +    L+  S     + L+ LDLS N     Y   +    G+   L+ L L  N
Sbjct: 316 TVENSKV---FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK-GAWPSLQTLVLSQN 371

Query: 136 HFND--SILPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNL-----QLLDLRLANLT 187
           H          L TL +LT+L +  N       + +    +R L      +  ++     
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

Query: 188 NLKTLDLRDCGITTI 202
            L+ LD+ +  + + 
Sbjct: 432 TLEVLDVSNNNLDSF 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
               + +   + +    F+    L+ LDLS N         +    G L  LK LNL  N
Sbjct: 56  ILKSSRI---NTIEGDAFYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSLKYLNLMGN 108

Query: 136 HFND-SILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------L 183
            +    +      L +L TL +              + L +L  L+++           L
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168

Query: 184 ANLTNLKTLDLRDCGITTIQ 203
            ++ ++  L L       + 
Sbjct: 169 KSIRDIHHLTLHLSESAFLL 188

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 16/153 (10%)

Query: 67  LLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD-SNGSLK 125
           L L++    + + N L   +     +     +++++ +       FY           L+
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 126 QLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR- 182
           ++K + +E +        +   L SL  L L EN +               +LQ L L  
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 183 ------------LANLTNLKTLDLRDCGITTIQ 203
                       L  L NL +LD+       + 
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 74  KFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLE 133
               S N L  +      +    + L SLD+S N F         DS    ++++ LNL 
Sbjct: 365 TLVLSQNHLRSMQ-KTGEILLTLKNLTSLDISRNTFHPMP-----DSCQWPEKMRFLNLS 418

Query: 134 ANH---FNDSILPYLNTLI--------------SLTTLILRENNIEGSRTIEGLSNLRNL 176
           +         I   L  L                L  L +  N +   +T+   S    L
Sbjct: 419 STGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL---KTLPDASLFPVL 475

Query: 177 QLLDLR-----------LANLTNLKTLDLRD 196
            ++ +               LT+L+ + L  
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
           F     L  L++   +   +       S  S++ +  L L  +     +  + + L S+ 
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 153 TLILRENNIEG--SRTIEGLSNLRNLQLLDLRLANLTNLKTLDL 194
            L LR+ N+       +        ++ L  R + LT+    +L
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 47  DCSNDWDGVKCNATT-RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLS 105
           +CS     V C+      V   +  +T   +   N +  ++      F  F  L+ L+L+
Sbjct: 8   ECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQ---DEFASFPHLEELELN 64

Query: 106 LNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY--LNTLISLTTLILRENNIE- 162
            N      E  A+++   L  L+ L L +N     ++P      L +LT L + EN I  
Sbjct: 65  ENIVSAV-EPGAFNN---LFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 163 -GSRTIEGLSNLRNLQLLDLRL--------ANLTNLKTLDLRDCGITTIQ 203
                 + L NL++L++ D  L        + L +L+ L L  C +T+I 
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 20/124 (16%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
                 L  L L         +     S   L +LK+L +    + D++ P     ++LT
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 153 TLILRENNIEGSRTIE--GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGI 199
           +L +   N+     +    + +L  L+ L+L            L  L  L+ + L    +
Sbjct: 228 SLSITHCNL---TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 200 TTIQ 203
             ++
Sbjct: 285 AVVE 288

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 18/123 (14%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY--LNTLIS 150
           F     L+ L++S   +                 L  L++   +   + +PY  +  L+ 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLY----GLNLTSLSITHCNL--TAVPYLAVRHLVY 249

Query: 151 LTTLILRENNIE--GSRTIEGLSNLRNLQLLDLRL--------ANLTNLKTLDLRDCGIT 200
           L  L L  N I       +  L  L+ +QL+  +L          L  L+ L++    +T
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 201 TIQ 203
           T++
Sbjct: 310 TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISLTTLILR 157
           L SL ++            Y +   L  L+ LNL  N    +I    L+ L+ L  + L 
Sbjct: 226 LTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLV 280

Query: 158 ENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANLTNLKTLDLRD 196
              +     +E      L  L++L++              ++ NL+TL L  
Sbjct: 281 GGQL---AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 13/117 (11%)

Query: 92  LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISL 151
           +       +   ++ ++ +    +       S   +K L+L  N  +      L     L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLR------LANLTNLKTLDLRDCGITTI 202
             L L  N +        L +L  L+ LDL       L    +++TL   +  I+ +
Sbjct: 61  ELLNLSSNVL---YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-SILPYLNTLISLTTL 154
            +  +++ L+ N      +       G   +++ L+L+ N  +  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 155 ILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203
            L+ N I     ++G      L+ LDL             +   +  + LR+  +  I+
Sbjct: 175 NLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLIS 150
           SL      ++ LDLS N                  +L++LNL +N   +     L +L +
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 151 LTTLILRENNIEGSRTIEGLSNLRNL-----QLLDLRLANLTNLKTLDLRDCGITTIQ 203
           L TL L  N ++    +    ++  L      +  +  +     K + L +  IT ++
Sbjct: 82  LRTLDLNNNYVQ---ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 16/113 (14%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           +++L  + N            S    +  K + L  N               +  L L+ 
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
           N I+     E  ++   L+ L+L+               LKTLDL    +  +
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178
           +   +  + KI  +  +    ++     +  ++  L L  N +    +   L+    L+L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 179 LDLR---------LANLTNLKTLDLRDCGITTIQ 203
           L+L          L +L+ L+TLDL +  +  + 
Sbjct: 63  LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL 96

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 22/115 (19%)

Query: 94  HPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTT 153
             + +++ L L+                  L  +  L+L  N    ++ P L  L  L  
Sbjct: 438 MEYADVRVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490

Query: 154 LILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRD 196
           L   +N +E    ++G++NL  LQ L L             L +   L  L+L+ 
Sbjct: 491 LQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 13/174 (7%)

Query: 10  KERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLL 69
           + +  LL +     ++    Y +E L  +     +    +   D ++        +  + 
Sbjct: 380 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439

Query: 70  NDTAKF-NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLK 128
               +  + ++  L                +  LDLS N               +L+ L+
Sbjct: 440 YADVRVLHLAHKDL-----TVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLE 489

Query: 129 ILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           +L    N   +  +  +  L  L  L+L  N ++ S  I+ L +   L LL+L+
Sbjct: 490 VLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 96  FEELQSLD----LSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISL 151
           F  L+++D      L+     +             +++L+L       ++L +L  L+ +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLV 465

Query: 152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
           T L L  N +        L+ LR L++L            +ANL  L+ L L +  +   
Sbjct: 466 THLDLSHNRL--RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 21/133 (15%), Positives = 35/133 (26%), Gaps = 18/133 (13%)

Query: 86  SLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL--- 142
            L      + +  L  + L        YE        +LK +  +         S     
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 143 --PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLK 190
                     +  L L   ++     +  L  L  +  LDL           LA L  L+
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE 489

Query: 191 TLDLRDCGITTIQ 203
            L   D  +  + 
Sbjct: 490 VLQASDNALENVD 502

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 67  LLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQ 126
              N       + +SL        SL      ++ LDLS N                  +
Sbjct: 7   QNGNRYKIEKVTDSSLKQALA---SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTK 59

Query: 127 LKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL-----QLLDL 181
           L++LNL +N   +     L +L +L TL L  N ++    +    ++  L      +  +
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNNISRV 114

Query: 182 RLANLTNLKTLDLRDCGITTIQ 203
             +     K + L +  IT ++
Sbjct: 115 SCSRGQGKKNIYLANNKITMLR 136

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 13/118 (11%)

Query: 92  LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISL 151
           +       +   ++ ++ +    +       S   +K L+L  N  +      L     L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 152 TTLILRENNIEGSRTIEGLSNLRNLQLLDL------RLANLTNLKTLDLRDCGITTIQ 203
             L L  N +        L +L  L+ LDL       L    +++TL   +  I+ + 
Sbjct: 61  ELLNLSSNVL---YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-SILPYLNTLISLTTL 154
            +  +++ L+ N      +       G   +++ L+L+ N  +  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 155 ILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ 203
            L+ N I     ++G      L+ LDL             +   +  + LR+  +  I+
Sbjct: 175 NLQYNFI---YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 16/113 (14%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           +++L  + N            S    +  K + L  N               +  L L+ 
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI 202
           N I+     E  ++   L+ L+L+               LKTLDL    +  +
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178
           +   +  + KI  +  +    ++     +  ++  L L  N +        L+    L+L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLEL 62

Query: 179 LDLR---------LANLTNLKTLDLRDCGITTIQ 203
           L+L          L +L+ L+TLDL +  +  + 
Sbjct: 63  LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL 96

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 25/147 (17%), Positives = 37/147 (25%), Gaps = 14/147 (9%)

Query: 67  LLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQ 126
            L       + +       S         F  L +LDLS N   G     +         
Sbjct: 146 WLKPGLKVLSIAQAHSLNFS---CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 127 LKILNLEANHFN---DSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL 183
           L++L L                   + L  L L  N++  +           L  L+L  
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 184 ANLT--------NLKTLDLRDCGITTI 202
             L          L  LDL    +   
Sbjct: 263 TGLKQVPKGLPAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 18/136 (13%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
                 + G +     L     +L  L+L   ++       A         LK+L++   
Sbjct: 101 TLENLEVTGTAPPPL-LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIE------GLSNLRNLQLLDLRL------ 183
           H  +     +    +L+TL L +N   G R +           L+ L L +  +      
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 184 -----ANLTNLKTLDL 194
                A    L+ LDL
Sbjct: 220 CSALAAARVQLQGLDL 235

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
                 +   S +  +L     +LQ LDLS N+        + D      QL  LNL   
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW---PSQLNSLNLSFT 263

Query: 136 HFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178
                +   L     L+ L L  N ++ + + + L  + NL L
Sbjct: 264 GL-KQVPKGLPA--KLSVLDLSYNRLDRNPSPDELPQVGNLSL 303

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 28/123 (22%)

Query: 96  FEELQSLDLSLNAF---EGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
            +  + L LS N                   ++ L+IL+L  N     I        +L 
Sbjct: 47  LKACKHLALSTNNIEKISSL---------SGMENLRILSLGRNLIKK-IENLDAVADTLE 96

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGIT 200
            L +  N I    ++ G+  L NL++L +             LA L  L+ L L    + 
Sbjct: 97  ELWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 201 TIQ 203
              
Sbjct: 154 NDY 156

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 20/116 (17%)

Query: 98  ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR 157
           E   L   +   E      +     +LK  K L L  N+     +  L+ + +L  L L 
Sbjct: 26  EKVELHGMIPPIEKMDATLS-----TLKACKHLALSTNNIEK--ISSLSGMENLRILSLG 78

Query: 158 ENNIEGSRTIEGLSNLRN-LQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203
            N I   + IE L  + + L+ L +          +  L NL+ L + +  IT   
Sbjct: 79  RNLI---KKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 39/156 (25%)

Query: 71  DTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLN--------AFEGFYENRAYDSNG 122
            TA  + S+N+L    L           L SL LS N        AF             
Sbjct: 40  YTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------- 86

Query: 123 SLKQLKILNLEANHFNDSILP--YLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQL 178
            +  L+ L+L +NH     L     + L +L  L+L  N+I        E ++ L+ L L
Sbjct: 87  -VPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143

Query: 179 LDLRL-----------ANLTNLKTLDLRDCGITTIQ 203
              ++             L  L  LDL    +  + 
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 41/137 (29%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
                  +L   +           S   L  ++  N + ++     L  +    +L  L 
Sbjct: 18  LANAVKQNLGKQSVTDL------VSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR------------------------------LAN 185
           L  N I     +  L +L  L+ L +                               L +
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIH 126

Query: 186 LTNLKTLDLRDCGITTI 202
           L NL+ L +R+  + +I
Sbjct: 127 LKNLEILSIRNNKLKSI 143

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 21/114 (18%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L+ L ++ N  +         +      L  L L+ N   D     L  L +L  L +R 
Sbjct: 87  LEELSVNRNRLKNL-------NGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRN 137

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ 203
           N ++   +I  L  L  L++LDL          L  L  +  +DL         
Sbjct: 138 NKLK---SIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 145 LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLR 195
              L +     L + ++     +     L  +Q  +           +   TNLK L L 
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS 71

Query: 196 DCGITTI 202
              I+ +
Sbjct: 72  HNQISDL 78

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 39/124 (31%), Positives = 51/124 (41%), Gaps = 19/124 (15%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY--LNTLIS 150
           F  F ELQ LDLS    +   E+ AY S   L  L  L L  N      L     + L S
Sbjct: 48  FFSFPELQVLDLSRCEIQTI-EDGAYQS---LSHLSTLILTGNPI--QSLALGAFSGLSS 101

Query: 151 LTTLILRENNIEG--SRTIEGLSNLRNLQLLDLRL---------ANLTNLKTLDLRDCGI 199
           L  L+  E N+    +  I  L  L+ L +    +         +NLTNL+ LDL    I
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 200 TTIQ 203
            +I 
Sbjct: 162 QSIY 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 18/125 (14%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP-YLNTLISL 151
           F     LQ L                   G LK LK LN+  N      LP Y + L +L
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 152 TTLILRENNIE--GSRTIEGLSNLRNLQL-LDLRLANLT----------NLKTLDLRDCG 198
             L L  N I+      +  L  +  L L LDL L  +            LK L L    
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211

Query: 199 ITTIQ 203
           + ++ 
Sbjct: 212 LKSVP 216

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 89  NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL 148
             S       ++ LD S N+                 +L IL L+ N+  D    +L   
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHNNLTD--TAWLLNY 247

Query: 149 ISLTTLILRENNIEG--SRTIEGLSNLRNLQL-------LDLRLANLTNLKTLDLRDCGI 199
             L  + L  N +E         +  L  L +       L+L    +  LK LDL    +
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

Query: 200 TTIQ 203
             ++
Sbjct: 308 LHVE 311

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
             EL  L L  N               +   L  ++L  N     +      +  L  L 
Sbjct: 225 NVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 156 LRENNIEG-SRTIEGLSNLRNLQL-------LDLRLANLTNLKTLDLRDCGITTIQ 203
           +  N +   +   + +  L+ L L       ++        L+ L L    I T++
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 27/153 (17%)

Query: 66  HLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLK 125
            + LN+     F  +++     +  +L   F +++ L+L+    E         +     
Sbjct: 41  DITLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAH 93

Query: 126 QLKILNLEANHFNDSILP--YLNTLISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDL 181
            ++ L +  N      LP      +  LT L+L  N++    ++      N   L  L +
Sbjct: 94  TIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTLSM 148

Query: 182 R-----------LANLTNLKTLDLRDCGITTIQ 203
                           T+L+ L L    +T + 
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 87  LMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN 146
           L + +    +  L  +DLS N  E       Y     +++L+ L +  N    ++  Y  
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 147 TLISLTTLILRENNIEG-SRTIEGLSNLRNL-----QLLDLRLANLTNLKTLDLRD 196
            + +L  L L  N++    R       L NL      ++ L+L+    LK L L  
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 37/139 (26%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-SILPYLNTL- 148
             F     LQ+L LS N                +  L   N+  N  +  +I   +  L 
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211

Query: 149 --------------ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------L 183
                         + LT L L+ NN+        L N   L  +DL             
Sbjct: 212 ASHNSINVVRGPVNVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYNELEKIMYHPF 268

Query: 184 ANLTNLKTLDLRDCGITTI 202
             +  L+ L + +  +  +
Sbjct: 269 VKMQRLERLYISNNRLVAL 287

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 29/131 (22%), Positives = 42/131 (32%), Gaps = 35/131 (26%)

Query: 93  FHPFEELQSLDLSLN--------AFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY 144
           F   + L +L L  N        AF              L +L+ L L  N      LP 
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAP------------LVKLERLYLSKNQL--KELP- 116

Query: 145 LNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQLLDLRL----------ANLTNLKTL 192
                +L  L + EN I         GL+ +  ++L    L            +  L  +
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 193 DLRDCGITTIQ 203
            + D  ITTI 
Sbjct: 177 RIADTNITTIP 187

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 23/126 (18%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFY-ENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLI 149
           S+F+   ++  ++L  N  +    EN A+     +K+L  + +   +   + +P      
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQG---MKKLSYIRIADTNI--TTIP-QGLPP 192

Query: 150 SLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANLTNLKTLDLRD 196
           SLT L L  N I     ++   L  L NL  L L            LAN  +L+ L L +
Sbjct: 193 SLTELHLDGNKI---TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 197 CGITTI 202
             +  +
Sbjct: 250 NKLVKV 255

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 19/120 (15%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY--LNTLISLTT 153
            + LQ L +  N      ++        L Q+ ++ L  N    S +       +  L+ 
Sbjct: 120 PKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 154 LILRENNIEGSRTIEG--LSNLRNLQLLDLRL--------ANLTNLKTLDLRDCGITTIQ 203
           + + + NI    TI      +L  L L   ++          L NL  L L    I+ + 
Sbjct: 176 IRIADTNI---TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 78  SYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHF 137
             N L    + N   F   ++L  + ++                G    L  L+L+ N  
Sbjct: 153 GTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTI-------PQGLPPSLTELHLDGNKI 204

Query: 138 NDSILPYLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQL-------LDLRLANLTN 188
                  L  L +L  L L  N+I    + ++    +LR L L       +   LA+   
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 264

Query: 189 LKTLDLRDCGITTIQ 203
           ++ + L +  I+ I 
Sbjct: 265 IQVVYLHNNNISAIG 279

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 33/131 (25%), Positives = 43/131 (32%), Gaps = 34/131 (25%)

Query: 93  FHPFEELQSLDLSLN--------AFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY 144
           FH    L +L L            F G            L  L+ L L+ N      LP 
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRG------------LAALQYLYLQDNAL--QALPD 146

Query: 145 --LNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQLLDLRL--------ANLTNLKTL 192
                L +LT L L  N I     R   GL +L  L L   R+         +L  L TL
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 193 DLRDCGITTIQ 203
            L    ++ + 
Sbjct: 207 YLFANNLSALP 217

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 24/121 (19%), Positives = 35/121 (28%), Gaps = 19/121 (15%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY--LNTLISLTT 153
               Q + L  N            S  + + L IL L +N    + +       L  L  
Sbjct: 31  PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQ 84

Query: 154 LILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202
           L L +N    S        L  L  L L               L  L+ L L+D  +  +
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 203 Q 203
            
Sbjct: 145 P 145

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 34/155 (21%)

Query: 68  LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLN--------AFEGFYENRAYD 119
           +   + +     N +   S +  + F     L  L L  N        AF G        
Sbjct: 30  IPAASQRIFLHGNRI---SHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-------- 78

Query: 120 SNGSLKQLKILNLEANHFNDSILPY-LNTLISLTTLILRENNIE--GSRTIEGLSNLRNL 176
               L  L+ L+L  N    S+ P   + L  L TL L    ++  G     GL+ L+ L
Sbjct: 79  ----LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 177 QLLDLRL--------ANLTNLKTLDLRDCGITTIQ 203
            L D  L         +L NL  L L    I+++ 
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 32/136 (23%), Positives = 39/136 (28%), Gaps = 44/136 (32%)

Query: 92  LFHPFEELQSLDLSLN--------AFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP 143
           LF     LQ L L  N         F              L  L  L L  N    S+  
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRD------------LGNLTHLFLHGNRI-SSVPE 170

Query: 144 Y-LNTLISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANLTNL 189
                L SL  L+L +N +     +      +L  L  L L            LA L  L
Sbjct: 171 RAFRGLHSLDRLLLHQNRV---AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 190 KTLDLR------DCGI 199
           + L L       DC  
Sbjct: 228 QYLRLNDNPWVCDCRA 243

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 32/134 (23%)

Query: 99  LQSLDLSLNAF---------EGFYENRAYDSNGSLKQLKILNLEANHFND----SILPYL 145
           L+ L L  N               E        +   L+ +    N   +          
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 146 NTLISLTTLILRENNI--EGSRTI--EGLSNLRNLQLLDLR---------------LANL 186
            +   L T+ + +N I  EG   +  EGL+  + L++LDL+               L + 
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 187 TNLKTLDLRDCGIT 200
            NL+ L L DC ++
Sbjct: 244 PNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 42/139 (30%)

Query: 99  LQSLDLSLNAF-----EGFYENRAYDSNGSLKQLKILNLEANHFND-------------S 140
           L ++ LS NAF     E   +      +     L+ L L  N                 +
Sbjct: 96  LHTVRLSDNAFGPTAQEPLID--FLSKH---TPLEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 141 ILPYLNTLISLTTLILRENNI--EGSRTI-EGLSNLRNLQLLDLR--------------- 182
           +         L ++I   N +     +   +   + R L  + +                
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 183 -LANLTNLKTLDLRDCGIT 200
            LA    LK LDL+D   T
Sbjct: 211 GLAYCQELKVLDLQDNTFT 229

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 71  DTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKIL 130
           DT   + S N L+  SL   +   P+  L  L+L                +G+L  L  L
Sbjct: 32  DTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRAEL------TKLQVDGTLPVLGTL 82

Query: 131 NLEANHFNDSILPYLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQLLDLRL----- 183
           +L  N    S+     TL +LT L +  N +       + GL  L+ L L    L     
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 184 ---ANLTNLKTLDLRDCGITTIQ 203
                   L+ L L +  +T + 
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELP 164

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 26/123 (21%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISLTTLILR 157
           LQ + +         +     +      L+ L L  N      LP  + +L  L  L +R
Sbjct: 106 LQHMTIDAAGLMELPD-----TMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIR 158

Query: 158 ENN--------IEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGI 199
                      +  +        L NLQ L L           +ANL NLK+L +R+  +
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218

Query: 200 TTI 202
           + +
Sbjct: 219 SAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 19/116 (16%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L+SL +  +            +   L +L+ L+L       +  P       L  LIL++
Sbjct: 208 LKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 159 NNIEGSRTI-EGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202
            +     T+   +  L  L+ LDLR           +A L     + +       +
Sbjct: 263 CS--NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 92  LFHPFEELQSLDLSLNA---FEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL 148
           L    ++  ++D S N     +GF           L++LK L +  N            L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKLDGF---------PLLRRLKTLLVNNNRICRIGEGLDQAL 87

Query: 149 ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR--------------LANLTNLKTLDL 194
             LT LIL  N++     ++ L++L++L  L +               +  +  ++ LD 
Sbjct: 88  PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147

Query: 195 RD 196
           + 
Sbjct: 148 QK 149

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           +L Q   ++   N      L     L  L TL++  N I           L +L  L L 
Sbjct: 40  TLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNRICRIGEGL-DQALPDLTELILT 96

Query: 183 ------------LANLTNLKTLDLRDCGITTIQ 203
                       LA+L +L  L +    +T  +
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
             EL  L L  N               +   L  ++L  N     +      +  L  L 
Sbjct: 231 NVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 156 LRENNIEG-SRTIEGLSNLRNLQL-------LDLRLANLTNLKTLDLRDCGITTIQ 203
           +  N +   +   + +  L+ L L       ++        L+ L L    I T++
Sbjct: 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 87  LMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN 146
           L + +    +  L  +DLS N  E       Y     +++L+ L +  N    ++  Y  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 147 TLISLTTLILRENNIEG-SRTIEGLSNLRNL-----QLLDLRLANLTNLKTLDLRD 196
            + +L  L L  N++    R       L NL      ++ L+L+    LK L L  
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 26/121 (21%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
                 L   ++S N                   ++ L+   N    +++      + LT
Sbjct: 188 LSLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSI--NVVR-GPVNVELT 235

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT 201
            L L+ NN+        L N   L  +DL               +  L+ L + +  +  
Sbjct: 236 ILKLQHNNL---TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292

Query: 202 I 202
           +
Sbjct: 293 L 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 24/128 (18%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP--YLNTL 148
           +L   F +++ L+L+    E         +      ++ L +  N      LP      +
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAI--RYLPPHVFQNV 122

Query: 149 ISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANLTNLKTLDLR 195
             LT L+L  N++    ++      N   L  L +                T+L+ L L 
Sbjct: 123 PLLTVLVLERNDLS---SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 196 DCGITTIQ 203
              +T + 
Sbjct: 180 SNRLTHVD 187

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 23/121 (19%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
           F ++     + + + GF        + +L   KI+  + +         L++   +  L 
Sbjct: 29  FYDVHIDMQTQDVYFGF-------EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 156 LRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI 202
           L +  IE    I+    +    +Q L +              N+  L  L L    ++++
Sbjct: 82  LNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 203 Q 203
            
Sbjct: 139 P 139

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 18/127 (14%)

Query: 82  LFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI 141
           +    L           L+ +D+  N+ +                L+ +    N      
Sbjct: 138 VSNNQLEKLPELQNSSFLKIIDVDNNSLKKL--------PDLPPSLEFIAAGNNQL--EE 187

Query: 142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL------ANLTNLKTLDLR 195
           LP L  L  LT +    N++   +  +   +L ++   +  L       NL  L T+   
Sbjct: 188 LPELQNLPFLTAIYADNNSL--KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 196 DCGITTI 202
           +  + T+
Sbjct: 246 NNLLKTL 252

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLIS 150
            L      L+ +    N  E            +L  L  +  + N      LP  +  +S
Sbjct: 167 KLPDLPPSLEFIAAGNNQLEEL------PELQNLPFLTAIYADNNSL--KKLP--DLPLS 216

Query: 151 LTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLT-------NLKTLDLRDCGITTI 202
           L +++   N +E    +  L NL  L  +      L        +L+ L++RD  +T +
Sbjct: 217 LESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLL 179
            N S   L+     +++    +      + S T      +  E +    G    R + + 
Sbjct: 6   RNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVS 63

Query: 180 DLRLANLTNLKTLDLRDCGITTI 202
            LR         L+L + G++++
Sbjct: 64  RLRDCLDRQAHELELNNLGLSSL 86

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
                 L ++    N+ +                L+ +    N      LP L  L  LT
Sbjct: 191 LQNLPFLTAIYADNNSLKKL--------PDLPLSLESIVAGNNIL--EELPELQNLPFLT 240

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLRLANL----TNLKTLDLRDCGITTIQ 203
           T+    N ++     +   +L  L + D  L +L     +L  LD+ +   + + 
Sbjct: 241 TIYADNNLLK--TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 293

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 16/108 (14%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L+S+    N  E            +L  L  +  + N      LP  +   SL  L +R+
Sbjct: 217 LESIVAGNNILEEL------PELQNLPFLTTIYADNNLL--KTLP--DLPPSLEALNVRD 266

Query: 159 NNIEGSRTIEGLSNLRNLQLLDLRLANLT----NLKTLDLRDCGITTI 202
           N +  +   E   +L  L + +   + L+    NL  L+     I ++
Sbjct: 267 NYL--TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 42  DGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQS 101
           D  +S+CS       C       +  L       + S NS+   + +N + F   ++LQ 
Sbjct: 2   DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSI---AELNETSFSRLQDLQF 58

Query: 102 LDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY--LNTLISLTTLILREN 159
           L +          N  +     L  L IL L+ N F    L     N L +L  L L + 
Sbjct: 59  LKVEQQTPGLVIRNNTFRG---LSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQC 113

Query: 160 NIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCGITTIQ 203
           N++G+                     LT+L+ L LRD  I  IQ
Sbjct: 114 NLDGAVLSGNF------------FKPLTSLEMLVLRDNNIKKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 33/140 (23%), Positives = 50/140 (35%), Gaps = 23/140 (16%)

Query: 65  MHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSL 124
             L  +     + S + +F +     S+F  F +L+ L L+ N      ++ A+     L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLK---SVFSHFTDLEQLTLAQNEINKI-DDNAFWG---L 322

Query: 125 KQLKILNLEANHFNDSILPYL-NTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL 183
             L  LNL  N    SI   +   L  L  L L  N+I                L D   
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR--------------ALGDQSF 367

Query: 184 ANLTNLKTLDLRDCGITTIQ 203
             L NLK L L    + ++ 
Sbjct: 368 LGLPNLKELALDTNQLKSVP 387

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 30/122 (24%), Positives = 38/122 (31%), Gaps = 26/122 (21%)

Query: 92  LFHPFEELQSLDLSLNA---FEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL 148
           L   F  L+ L L                      L +LK L L  N     +      L
Sbjct: 44  LTAEFVNLEFLSLINVGLISVSNL---------PKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 149 ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR--------------LANLTNLKTLDL 194
            +LT L L  N ++   T+E L  L  L+ LDL                  L  L  LD 
Sbjct: 95  PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154

Query: 195 RD 196
            D
Sbjct: 155 YD 156

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 18/120 (15%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
              ++ L L         + +          L+ L+L         +  L  L  L  L 
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLE 77

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ 203
           L EN I G   +     L NL  L+L             L  L  LK+LDL +C +T + 
Sbjct: 78  LSENRIFGGLDMLA-EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 120 SNGSLKQLKILNLEANHFND-SILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQL 178
            N +   ++ L L+    ND  I       ++L  L L    +    ++  L  L  L+ 
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKK 75

Query: 179 LDLR-----------LANLTNLKTLDLRDCGITTIQ 203
           L+L               L NL  L+L    +  I 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 26/127 (20%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLK--QLKILNLEANHFNDSILPYLNTL 148
            +F     +  +++  N  E      +    G+    +L  L +       + +P  +  
Sbjct: 141 GVFSGLRNMNCIEMGGNPLE-----NSGFEPGAFDGLKLNYLRISEAKL--TGIP-KDLP 192

Query: 149 ISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANLTNLKTLDLR 195
            +L  L L  N I+    IE   L     L  L L            L+ L  L+ L L 
Sbjct: 193 ETLNELHLDHNKIQ---AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 196 DCGITTI 202
           +  ++ +
Sbjct: 250 NNKLSRV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 16/114 (14%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
           L  L +S     G             + L  L+L+ N      L  L     L  L L  
Sbjct: 174 LNYLRISEAKLTGI-------PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 159 NNIE--GSRTIEGLSNLRNLQL-------LDLRLANLTNLKTLDLRDCGITTIQ 203
           N I    + ++  L  LR L L       +   L +L  L+ + L    IT + 
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 17/120 (14%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISL 151
           F P  +LQ L +S N                   L  L +  N     +     + L ++
Sbjct: 98  FSPLRKLQKLYISKNHLVEI-------PPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNM 149

Query: 152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLT--------NLKTLDLRDCGITTIQ 203
             + +  N +E S    G  +   L  L +  A LT         L  L L    I  I+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 24/124 (19%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI--LPYLN------- 146
             EL++L++S N                L +L I +    H       L  L        
Sbjct: 80  PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 134

Query: 147 ----TLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRL----ANLTNLKTLDLRDCG 198
                   L  L + +N +  +      S L  L   + +L       + L+ L + D  
Sbjct: 135 SLPVLPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192

Query: 199 ITTI 202
           + ++
Sbjct: 193 LASL 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 19/109 (17%)

Query: 99  LQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRE 158
              L++  +             +     +  L +  N+     LP       L TL +  
Sbjct: 42  NAVLNVGESGLTTL-------PDCLPAHITTLVIPDNNLTS--LP--ALPPELRTLEVSG 90

Query: 159 NNIEGSRTI-EGLSNLRNLQLLDLRLANL----TNLKTLDLRDCGITTI 202
           N +    ++      L  L +    L +L    + L  L +    +T++
Sbjct: 91  NQLT---SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 17/129 (13%), Positives = 43/129 (33%), Gaps = 23/129 (17%)

Query: 92  LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL-NTLIS 150
            F     L+ L++  +  +  YE ++  S   ++ +  L L        +L    +   S
Sbjct: 169 DFAGLTFLEELEIDASDLQS-YEPKSLKS---IQNVSHLILHMKQHI-LLLEIFVDVTSS 223

Query: 151 LTTLILRENNIEGSR-------TIEGLSNLRNLQLLDLR----------LANLTNLKTLD 193
           +  L LR+ +++              L      + + +           L  ++ L  L+
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283

Query: 194 LRDCGITTI 202
                + ++
Sbjct: 284 FSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY--LNTL 148
           S       LQ+L L+ N      E  ++ S   L  L+ L+L  N+   S L       L
Sbjct: 70  SDLQRCVNLQALVLTSNGINTI-EEDSFSS---LGSLEHLDLSYNYL--SNLSSSWFKPL 123

Query: 149 ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRD 196
            SLT L L  N  +        S+L  LQ+L +              A LT L+ L++  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 197 CGITTIQ 203
             + + +
Sbjct: 184 SDLQSYE 190

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 34/133 (25%)

Query: 92  LFHPFEELQSLDLSLN--------AFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP 143
            F     L+ LDLS N         F+             L  L  LNL  N +  ++  
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKP------------LSSLTFLNLLGNPY-KTLGE 141

Query: 144 Y--LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLK 190
               + L  L  L +   +       +  + L  L+ L++            L ++ N+ 
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201

Query: 191 TLDLRDCGITTIQ 203
            L L       + 
Sbjct: 202 HLILHMKQHILLL 214

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 19/120 (15%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-----LNT 147
               + +  L L +            D   S++ L++ + + + F+ S L       L  
Sbjct: 194 LKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 148 LISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRD 196
             +   + + + ++   + ++ L+ +  L  L+                LT+L+ + L  
Sbjct: 253 KFTFRNVKITDESL--FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLI 149
           S F P   L  L+L  N ++   E   +     L +L+IL +        I       L 
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSH---LTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 150 SLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANLTNLKTLDLRD 196
            L  L +  +++   ++ E   L +++N+  L L            +   ++++ L+LRD
Sbjct: 175 FLEELEIDASDL---QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 197 CGITTIQ 203
             + T  
Sbjct: 232 TDLDTFH 238

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 15/77 (19%)

Query: 140 SILPYLNTLISLTTLILRENNIEGSRTIEG--LSNLRNLQLLDLR-----------LANL 186
             L +L    +LT L +        + +E   L  L  L+ L +                
Sbjct: 22  DSLHHLPGAENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 187 TNLKTLDLRDCGITTIQ 203
             L  L+L    + ++ 
Sbjct: 80  PRLSRLNLSFNALESLS 96

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
             +++ L L  +      E +        ++L+ L+          +  L  L  L  L 
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLE 70

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ 203
           L +N + G   +       NL  L+L             L  L NLK+LDL +C +T + 
Sbjct: 71  LSDNRVSGGLEVLA-EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 26/122 (21%)

Query: 92  LFHPFEELQSLDLSLNAF---EGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL 148
           L   FEEL+ L                        L +LK L L  N  +  +       
Sbjct: 37  LTDEFEELEFLSTINVGLTSIANL---------PKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 149 ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR--------------LANLTNLKTLDL 194
            +LT L L  N I+   TIE L  L NL+ LDL                  L  L  LD 
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147

Query: 195 RD 196
            D
Sbjct: 148 YD 149

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 19/139 (13%)

Query: 69  LNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLK 128
           L +        N L  +S +   +    + LQ LD+S N+     +          K L 
Sbjct: 347 LTELETLILQMNQLKELSKI-AEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---TKSLL 402

Query: 129 ILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------ 182
            LN+ +N   D+I   L     +  L L  N I      + +  L  LQ L++       
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLKS 458

Query: 183 -----LANLTNLKTLDLRD 196
                   LT+L+ + L  
Sbjct: 459 VPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 74  KFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLE 133
             N    ++ G  +++            LD S N          +++ G L +L+ L L+
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQ 356

Query: 134 ANHFN--DSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLT---- 187
            N       I      + SL  L + +N++         S  ++L  L++    LT    
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 188 -----NLKTLDLRDCGITTI 202
                 +K LDL    I +I
Sbjct: 417 RCLPPRIKVLDLHSNKIKSI 436

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 40/142 (28%)

Query: 71  DTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKIL 130
            TA+   + N      L    +F    +L+ ++ S N                    KI 
Sbjct: 33  YTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNN--------------------KIT 70

Query: 131 NLEANHFNDSILPYLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQLLDLRLA---- 184
           ++E   F             +  ++L  N +E    +  +GL +L+ L L   R+     
Sbjct: 71  DIEEGAFEG--------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122

Query: 185 ----NLTNLKTLDLRDCGITTI 202
                L++++ L L D  ITT+
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTV 144

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 18/111 (16%)

Query: 96  FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLI 155
              L+ LD   N      E            LK L+++ N    ++LP       L  + 
Sbjct: 99  PASLEYLDACDNRLSTLPE--------LPASLKHLDVDNNQL--TMLP--ELPALLEYIN 146

Query: 156 LRENNIEGSRTIEGLSNLRNLQLLDLRL----ANLTNLKTLDLRDCGITTI 202
              N +  +   E  ++L  L + + +L        +L+ LD+    + ++
Sbjct: 147 ADNNQL--TMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESL 195

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
             P  +L  L+   N                   L  LN   N   +  +  ++    LT
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL-------DVSQNPLLTYLNCARNTLTE--ID-VSHNTQLT 151

Query: 153 TLILRENNIEGSRTIEGLSNLRNL-----QLLDLRLANLTNLKTLDLRDCGITTI 202
            L    N       +   + L  L     ++ +L ++    L  L+     IT +
Sbjct: 152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 15/115 (13%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
             P  +L   D S+N               +L +L  L+       +  L +      L 
Sbjct: 229 VTPLTQLTYFDCSVNPLTEL-------DVSTLSKLTTLHCIQTDLLEIDLTHNT---QLI 278

Query: 153 TLILRENNIEGSRTIEGLSNLRNL-----QLLDLRLANLTNLKTLDLRDCGITTI 202
                         +   + L  L      + +L L+    L  L L +  +T +
Sbjct: 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 127 LKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL-----QLLDL 181
                  A     +       L +LT+L    ++I     IE L+ L  L      +  L
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 182 RLANLTNLKTLDLRDCGITTI 202
            L+  TNL  L      +T +
Sbjct: 80  DLSQNTNLTYLACDSNKLTNL 100

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 18/110 (16%)

Query: 99  LQSLDLSLNAFEGFYENRAYD-----SNGSLKQLKILNLEANHFNDSILPYL---NTLIS 150
           L+ L L +   +  ++          S      LK L +      + ++      + L  
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280

Query: 151 LTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCGIT 200
           L T+ +    +    T EG   L +       +  + +LK ++++   ++
Sbjct: 281 LETMDISAGVL----TDEGARLLLD------HVDKIKHLKFINMKYNYLS 320

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 100 QSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY--LNTLISLTTLILR 157
             + L  N  +      A+      K+L+ ++L  N    S L       L SL +L+L 
Sbjct: 35  TEIRLEQNTIKVI-PPGAFSP---YKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLY 88

Query: 158 ENNIEG--SRTIEGLSNLRNLQLLDLRLA--------NLTNLKTLDLRDCGITTI 202
            N I        EGL +L+ L L   ++         +L NL  L L D  + TI
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 43/155 (27%)

Query: 71  DTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLN--------AFEGFYENRAYDSNG 122
              +     N++  +       F P+++L+ +DLS N        AF+G           
Sbjct: 33  TITEIRLEQNTIKVIP---PGAFSPYKKLRRIDLSNNQISELAPDAFQG----------- 78

Query: 123 SLKQLKILNLEANHFNDSILPY--LNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQL 178
            L+ L  L L  N   +  LP      L SL  L+L  N I        + L NL  L L
Sbjct: 79  -LRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135

Query: 179 LDLRL--------ANLTNLKTLDLR------DCGI 199
            D +L        + L  ++T+ L       DC +
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 29/154 (18%)

Query: 68  LLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQL 127
           L  +  +  F    L    ++    F  F +L+ +++S N      E   + +   L ++
Sbjct: 28  LPRNAIELRFVLTKL---RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84

Query: 128 KILN------LEANHFNDSILPYLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQLL 179
           +I        +    F +        L +L  L++    I+               L + 
Sbjct: 85  RIEKANNLLYINPEAFQN--------LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 180 DLR---------LANLT-NLKTLDLRDCGITTIQ 203
           D              L+     L L   GI  I 
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 30/153 (19%)

Query: 76  NFSYNSL--FGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG--SLKQLKILN 131
             S N +   GV ++   L     +L++L L         +N         S   L+ L 
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS--DNCRDLCGIVASKASLRELA 233

Query: 132 LEANHFNDSILPYL-----NTLISLTTLILRENNI--EGSRTI-EGLSNLRNLQLLDLR- 182
           L +N   D  +  L     +    L TL + E  I  +G   +   L    +L+ L L  
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293

Query: 183 ---------------LANLTNLKTLDLRDCGIT 200
                          L     L++L ++ C  T
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 26/153 (16%)

Query: 74  KFNFSYNSL--FGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILN 131
           +     N L   G++ +   L HP   L++L +                  + + LK L+
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 132 LEANHFNDSILPYL-----NTLISLTTLILRENNI--EGSRTI-EGLSNLRNLQLLDLR- 182
           L  N   D     L          L +L ++  +            L+  R L  L +  
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 183 ---------------LANLTNLKTLDLRDCGIT 200
                              + L+ L L DC ++
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 75  FNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA 134
               +           +L+  F E+    LS++     +         S      LN   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP----PSPSSFTFLNFTQ 362

Query: 135 NHFNDSILPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLRLANL------- 186
           N F DS+    +TL  L TLIL+ N ++   +      N+ +L+ LD+ L +L       
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 187 -----TNLKTLDLRDCGIT 200
                 ++  L+L    +T
Sbjct: 423 TCAWAESILVLNLSSNMLT 441

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 16/109 (14%)

Query: 91  SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA-NHFNDSILPYLNTLI 149
           +      ++Q++D + +       +  +D    L+ ++ + L   ++  D  L  L+ L 
Sbjct: 55  TGPLDKYKIQAIDATDSCIM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 150 SLTTLILRENNIEGSR-TIEGLSNLRNLQLLDLRLANLTNLKTLDLRDC 197
           +L   +L    I     T +G+  L           +  NLK L L D 
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIAL----------HHFRNLKYLFLSDL 149

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 40/158 (25%)

Query: 74  KFNFSYNSL--FGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG------SLK 125
           + N +   +     +++   L      L  ++L+             D  G         
Sbjct: 76  QLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL---------DPAGLRTLLPVFL 126

Query: 126 QLKILNLEANHFNDSILPYL-----NTLISLTTLILRENNI--EGSRTI-EGLSNLRNLQ 177
           + + L L+ N         L     +    +TTL L  N +   G   + EGL+   ++ 
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 178 LLDLR---------------LANLTNLKTLDLRDCGIT 200
            L L                L     L+ L++   G  
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.6
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.6
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.59
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.57
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.57
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.55
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.55
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.55
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.55
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.53
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.52
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.5
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.5
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.49
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.48
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.47
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.47
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.39
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.33
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.33
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.3
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.24
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.24
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.21
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.2
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.1
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.1
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.9
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.71
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.29
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.77
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.22

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1.1e-26  Score=188.06  Aligned_cols=152  Identities=26%  Similarity=0.362  Sum_probs=92.4

Q ss_pred             ccCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCC--CCccccCCCC--CCeeEEecCCccccccccC
Q 035976            5 KCCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSND--WDGVKCNATT--RRVMHLLLNDTAKFNFSYN   80 (203)
Q Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~--w~gv~c~~~~--~~v~~l~l~~~~~l~l~~~   80 (203)
                      +.|.+.|++||++||+++.     ||.  .+.+|..  +  .+|| .  |.||.|+...  ++|+.++++++   .+.+.
T Consensus         1 ~~c~~~~~~aL~~~k~~~~-----~~~--~l~~W~~--~--~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~---~l~~~   65 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLG-----NPT--TLSSWLP--T--TDCC-NRTWLGVLCDTDTQTYRVNNLDLSGL---NLPKP   65 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTT-----CCG--GGTTCCT--T--SCTT-TTCSTTEEECCSSSCCCEEEEEEECC---CCSSC
T ss_pred             CCCCHHHHHHHHHHHHhcC-----Ccc--cccCCCC--C--CCCC-cCCCcceEeCCCCCCceEEEEECCCC---CccCC
Confidence            4699999999999999997     665  6899976  3  5899 7  9999998644  78999999988   65541


Q ss_pred             ccccccccCCccCCCCCCCCEEEccC-CcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCC
Q 035976           81 SLFGVSLMNFSLFHPFEELQSLDLSL-NAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILREN  159 (203)
Q Consensus        81 ~l~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  159 (203)
                           . ..+..+..+++|++|++++ |.+.+.+|.    .+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus        66 -----~-~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           66 -----Y-PIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             -----E-ECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             -----c-ccChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence                 0 0133444455555555552 444444444    4444455555555555544444444444445555555555


Q ss_pred             CCCCCcchhhhCCCCCCcEEEEe
Q 035976          160 NIEGSRTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       160 ~l~~~lp~~~~~~l~~L~~L~l~  182 (203)
                      .+++.+|. .+..+++|++|+++
T Consensus       136 ~l~~~~p~-~~~~l~~L~~L~L~  157 (313)
T 1ogq_A          136 ALSGTLPP-SISSLPNLVGITFD  157 (313)
T ss_dssp             EEESCCCG-GGGGCTTCCEEECC
T ss_pred             ccCCcCCh-HHhcCCCCCeEECc
Confidence            44443442 44444444444444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=3.6e-23  Score=185.40  Aligned_cols=175  Identities=27%  Similarity=0.329  Sum_probs=127.1

Q ss_pred             cCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCeeEEecCCcccccccc------
Q 035976            6 CCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSY------   79 (203)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~l~~------   79 (203)
                      .+.++|++||++||+++.     ||.  .+.+|..  +  ++|| .|.||+|+  .++|+.++|++.   .+.+      
T Consensus         8 ~~~~~~~~all~~k~~~~-----~~~--~l~~W~~--~--~~~C-~w~gv~C~--~~~v~~L~L~~~---~l~g~~~~l~   70 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLP-----DKN--LLPDWSS--N--KNPC-TFDGVTCR--DDKVTSIDLSSK---PLNVGFSAVS   70 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCS-----CTT--SSTTCCT--T--SCGG-GSTTEEEE--TTEEEEEECTTS---CCCEEHHHHH
T ss_pred             cCCHHHHHHHHHHHhhCC-----Ccc--cccCCCC--C--CCCc-CCcceEEC--CCcEEEEECCCC---CcCCccCccC
Confidence            356789999999999997     776  6899985  3  6899 99999997  589999999987   4433      


Q ss_pred             -------------CccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhh-
Q 035976           80 -------------NSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL-  145 (203)
Q Consensus        80 -------------~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-  145 (203)
                                   +.+.+... .+..++.+++|++|+|++|.+++.+|..  ..+..+++|++|++++|.+++..|..+ 
T Consensus        71 ~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  147 (768)
T 3rgz_A           71 SSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGG  147 (768)
T ss_dssp             HHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred             hhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence                         22222221 2357888999999999999988766531  146778888888888888877777655 


Q ss_pred             cCCCCCcEEeccCCCCCCCcchhh---hCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCc
Q 035976          146 NTLISLTTLILRENNIEGSRTIEG---LSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       146 ~~l~~L~~L~L~~N~l~~~lp~~~---~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~  201 (203)
                      ..+++|++|++++|++++..|. .   +..+++|++|+++         +..+++|++|+|++|++++
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~  214 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST  214 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCS
T ss_pred             ccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCC
Confidence            6778888888888888774432 3   5666677777665         3455556666666665544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=8e-23  Score=179.73  Aligned_cols=177  Identities=16%  Similarity=0.189  Sum_probs=118.3

Q ss_pred             CChHHHHHHHHHHhhccccCCccccccc-------cCCCCCCCCCCCCCCCCC---CccccCCCCCCeeEEecCCc----
Q 035976            7 CLQKERIGLLALKSFFISISDTEYAEEI-------LTSWVDDDGMSSDCSNDW---DGVKCNATTRRVMHLLLNDT----   72 (203)
Q Consensus         7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~W~~~~~~~~~~c~~w---~gv~c~~~~~~v~~l~l~~~----   72 (203)
                      ...+|++||.++|.++.     ++.+..       ..+|..  +  .+|| .|   .||.|+. .++|+.|+|+++    
T Consensus        27 ~~~~d~~aL~~~~~~~~-----~~~w~~~~~~~~~~~~W~~--~--~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~l~g   95 (636)
T 4eco_A           27 EYIKDYLALKEIWDALN-----GKNWSQQGFGTQPGANWNF--N--KELD-MWGAQPGVSLNS-NGRVTGLSLEGFGASG   95 (636)
T ss_dssp             HHHHHHHHHHHHHHHTT-----GGGCCCCC------CCCCC--S--SCGG-GTTCCTTEEECT-TCCEEEEECTTSCCEE
T ss_pred             hHHHHHHHHHHHHHHcC-----CCCcccCCcCCccCCCCCC--C--CCcc-cccCCCCeEEcC-CCCEEEEEecCcccCC
Confidence            34579999999999987     444322       347986  3  6899 99   9999986 489999999988    


Q ss_pred             ------------cccccccCcc------cc--------------------------------------------------
Q 035976           73 ------------AKFNFSYNSL------FG--------------------------------------------------   84 (203)
Q Consensus        73 ------------~~l~l~~~~l------~~--------------------------------------------------   84 (203)
                                  +.|++++|.+      .+                                                  
T Consensus        96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~  175 (636)
T 4eco_A           96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI  175 (636)
T ss_dssp             EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred             cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence                        2233333322      11                                                  


Q ss_pred             -------------------ccccCCccCCCCCCCCEEEccCCcCCCc-----------------ccchhhhccC--CCCC
Q 035976           85 -------------------VSLMNFSLFHPFEELQSLDLSLNAFEGF-----------------YENRAYDSNG--SLKQ  126 (203)
Q Consensus        85 -------------------~~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~~~l~--~l~~  126 (203)
                                         ... .|..++++++|++|+|++|.+++.                 +|.    .+.  .+++
T Consensus       176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~  250 (636)
T 4eco_A          176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKD  250 (636)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTT
T ss_pred             ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCC
Confidence                               000 134566677777777777777764                 565    666  6777


Q ss_pred             CCEEEccCCCCCCCChhhhcCCCCCcEEeccCCC-CCC-CcchhhhCCC------CCCcEEEEe------------cCCC
Q 035976          127 LKILNLEANHFNDSILPYLNTLISLTTLILRENN-IEG-SRTIEGLSNL------RNLQLLDLR------------LANL  186 (203)
Q Consensus       127 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~lp~~~~~~l------~~L~~L~l~------------~~~l  186 (203)
                      |++|++++|.+.+.+|..+..+++|+.|++++|+ +++ .+|. .+..+      ++|++|+++            ++.+
T Consensus       251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l  329 (636)
T 4eco_A          251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM  329 (636)
T ss_dssp             CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC
T ss_pred             CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCchhhhccC
Confidence            7777777777777777777777777777777776 665 5664 55554      677777776            3455


Q ss_pred             CCCCEEEccCCCCC
Q 035976          187 TNLKTLDLRDCGIT  200 (203)
Q Consensus       187 ~~L~~L~L~~N~l~  200 (203)
                      ++|+.|++++|+++
T Consensus       330 ~~L~~L~L~~N~l~  343 (636)
T 4eco_A          330 KKLGMLECLYNQLE  343 (636)
T ss_dssp             TTCCEEECCSCCCE
T ss_pred             CCCCEEeCcCCcCc
Confidence            56777777777776

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=2.7e-22  Score=163.27  Aligned_cols=137  Identities=13%  Similarity=0.123  Sum_probs=77.5

Q ss_pred             cCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccCC--------CCCCeeEEecCCcccccc
Q 035976            6 CCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNA--------TTRRVMHLLLNDTAKFNF   77 (203)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~~--------~~~~v~~l~l~~~~~l~l   77 (203)
                      ++...|++||++||+++..    |+. .....|........++| .|.|+.|..        ...+|+.|+++++   .+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~----~~~-~~~~~w~~~~~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---~l   93 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNA----DRN-RWHSAWRQANSNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSV---PL   93 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHH----CCT-THHHHHHHHTTTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESS---CC
T ss_pred             ccCchHHHHHHHHHHhccC----Cch-hhhhhhccccccccccc-ccCCcchhhhHHHHhcccccceeEEEccCC---Cc
Confidence            3566799999999999853    564 46778951100115789 999999942        3467889988887   44


Q ss_pred             ccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEecc
Q 035976           78 SYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILR  157 (203)
Q Consensus        78 ~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  157 (203)
                      ...         +..+..+++|++|++++|.++ .+|.    .+..+++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus        94 ~~l---------p~~l~~l~~L~~L~L~~n~l~-~lp~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           94 PQF---------PDQAFRLSHLQHMTIDAAGLM-ELPD----TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             SSC---------CSCGGGGTTCSEEEEESSCCC-CCCS----CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             hhc---------ChhhhhCCCCCEEECCCCCcc-chhH----HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            322         233444445555555555544 2444    4444444455555444444 344444444444444444


Q ss_pred             CCCCCCCcc
Q 035976          158 ENNIEGSRT  166 (203)
Q Consensus       158 ~N~l~~~lp  166 (203)
                      +|++.+.+|
T Consensus       159 ~n~~~~~~p  167 (328)
T 4fcg_A          159 ACPELTELP  167 (328)
T ss_dssp             EETTCCCCC
T ss_pred             CCCCccccC
Confidence            444333333

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=1.1e-21  Score=177.50  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=55.2

Q ss_pred             cCChHHHHHHHHHHhhccccCCccccccccCCCCCCCC-CCCCC--CCCC------------CccccCCCCCCeeEEecC
Q 035976            6 CCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDG-MSSDC--SNDW------------DGVKCNATTRRVMHLLLN   70 (203)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~--c~~w------------~gv~c~~~~~~v~~l~l~   70 (203)
                      ++..+|++||++||+++.     +|      +|..+.+ .+.+|  | .|            .||.|+. .++|+.|+|+
T Consensus       265 ~~~~~d~~ALl~~k~~l~-----~~------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls  331 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALD-----GK------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSLA  331 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTT-----GG------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEECT
T ss_pred             ccchHHHHHHHHHHHHcC-----CC------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEECc
Confidence            356689999999999997     55      4654320 00244  9 99            9999986 6899999999


Q ss_pred             CccccccccCccccccccCCccCCCCCCCCEEEc-cCCc
Q 035976           71 DTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDL-SLNA  108 (203)
Q Consensus        71 ~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L-~~N~  108 (203)
                      ++   ++.|.        .|+.+++|++|++|+| ++|.
T Consensus       332 ~~---~L~G~--------ip~~l~~L~~L~~LdLss~N~  359 (876)
T 4ecn_A          332 GF---GAKGR--------VPDAIGQLTELKVLSFGTHSE  359 (876)
T ss_dssp             TT---CCEEE--------ECGGGGGCTTCCEEESCCTTH
T ss_pred             cC---CCCCc--------CchHHhccccceEeeeccccc
Confidence            98   65543        2455666666666666 5553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=5.3e-19  Score=139.73  Aligned_cols=106  Identities=25%  Similarity=0.308  Sum_probs=56.0

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                      |..+++|++|++++|.++...+.    .+..+++|++|++++|.++...+..+..+++|+.|++++|.+++ +|...|..
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~  155 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK  155 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred             hcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccC
Confidence            34444444444444444442222    33445555555555555554444445555555555555555555 44434555


Q ss_pred             CCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          173 LRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       173 l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +++|++|+++           +..+++|+.|+|++|+|+++|
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            6666666665           445566666666666666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=9.8e-19  Score=135.25  Aligned_cols=138  Identities=21%  Similarity=0.262  Sum_probs=113.9

Q ss_pred             CCCCCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccch
Q 035976           46 SDCSNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENR  116 (203)
Q Consensus        46 ~~~c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  116 (203)
                      ...| .|.+|.|....         ..++.|+++++        .+.+.   .+..|..+++|++|+|++|.++...+. 
T Consensus        16 ~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n--------~i~~~---~~~~~~~l~~L~~L~L~~N~l~~i~~~-   82 (229)
T 3e6j_A           16 QCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDN--------QITKL---EPGVFDSLINLKELYLGSNQLGALPVG-   82 (229)
T ss_dssp             TCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSS--------CCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTT-
T ss_pred             CCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCC--------ccCcc---CHHHhhCccCCcEEECCCCCCCCcChh-
Confidence            5789 99999997521         23445555554        43333   467889999999999999999884444 


Q ss_pred             hhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCC
Q 035976          117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LAN  185 (203)
Q Consensus       117 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~  185 (203)
                         .+..+++|++|+|++|+++...+..+..+++|+.|++++|+++. +|. .+..+++|++|+++           +..
T Consensus        83 ---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~  157 (229)
T 3e6j_A           83 ---VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQLKSIPHGAFDR  157 (229)
T ss_dssp             ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             ---hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCcCCccCHHHHhC
Confidence               67889999999999999997666778999999999999999997 986 78999999999998           677


Q ss_pred             CCCCCEEEccCCCCCc
Q 035976          186 LTNLKTLDLRDCGITT  201 (203)
Q Consensus       186 l~~L~~L~L~~N~l~~  201 (203)
                      +++|+.|+|++|.++.
T Consensus       158 l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CTTCCEEECTTSCBCT
T ss_pred             CCCCCEEEeeCCCccC
Confidence            8899999999999863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=3.5e-19  Score=139.36  Aligned_cols=108  Identities=25%  Similarity=0.337  Sum_probs=61.6

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..|.++++|++|++++|.+++..+.    .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++...
T Consensus        52 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~  126 (251)
T 3m19_A           52 DATFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGV  126 (251)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred             HhHhcCcccCCEEECCCCcCCccCHh----HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-cChhH
Confidence            44556666666666666666664443    45556666666666666664444455556666666666666655 44434


Q ss_pred             hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      |..+++|++|+++           +..+++|+.|+|++|+|+++
T Consensus       127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            5555666666555           34455555555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=5.9e-18  Score=128.62  Aligned_cols=137  Identities=21%  Similarity=0.232  Sum_probs=110.7

Q ss_pred             CCCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhh
Q 035976           48 CSNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAY  118 (203)
Q Consensus        48 ~c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  118 (203)
                      .| .|.++.|....         .+++.|+++++   .+.+.        .+..+..+++|++|++++|.+++..+.   
T Consensus         6 ~C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n---~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~---   70 (208)
T 2o6s_A            6 SC-SGTTVECYSQGRTSVPTGIPAQTTYLDLETN---SLKSL--------PNGVFDELTSLTQLYLGGNKLQSLPNG---   70 (208)
T ss_dssp             EE-ETTEEECCSSCCSSCCSCCCTTCSEEECCSS---CCCCC--------CTTTTTTCTTCSEEECCSSCCCCCCTT---
T ss_pred             EE-CCCEEEecCCCccCCCCCCCCCCcEEEcCCC---ccCcC--------ChhhhcccccCcEEECCCCccCccChh---
Confidence            37 89999996521         24556666665   44332        456688999999999999999984443   


Q ss_pred             hccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCC
Q 035976          119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLT  187 (203)
Q Consensus       119 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~  187 (203)
                       .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++...|..+++|++|+++           +..++
T Consensus        71 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           71 -VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             -TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             -hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence             57889999999999999997666678899999999999999998 776568999999999998           67788


Q ss_pred             CCCEEEccCCCCCc
Q 035976          188 NLKTLDLRDCGITT  201 (203)
Q Consensus       188 ~L~~L~L~~N~l~~  201 (203)
                      +|+.|++++|.+.+
T Consensus       149 ~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          149 SLQYIWLHDNPWDC  162 (208)
T ss_dssp             TCCEEECCSCCBCC
T ss_pred             CccEEEecCCCeec
Confidence            99999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=6.5e-18  Score=129.91  Aligned_cols=135  Identities=23%  Similarity=0.381  Sum_probs=112.0

Q ss_pred             CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976           49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD  119 (203)
Q Consensus        49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  119 (203)
                      | .|..+.|.+..         ..++.|+++++   .+.+     .   ++..|..+++|++|+|++|.+++..|.    
T Consensus        11 C-~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n---~i~~-----i---~~~~~~~l~~L~~L~Ls~N~i~~~~~~----   74 (220)
T 2v9t_B           11 C-SNNIVDCRGKGLTEIPTNLPETITEIRLEQN---TIKV-----I---PPGAFSPYKKLRRIDLSNNQISELAPD----   74 (220)
T ss_dssp             E-ETTEEECTTSCCSSCCSSCCTTCCEEECCSS---CCCE-----E---CTTSSTTCTTCCEEECCSSCCCEECTT----
T ss_pred             E-CCCEEEcCCCCcCcCCCccCcCCCEEECCCC---cCCC-----c---CHhHhhCCCCCCEEECCCCcCCCcCHH----
Confidence            7 78888886421         24556666555   4433     2   466889999999999999999997677    


Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCC
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTN  188 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~  188 (203)
                      .|..+++|++|+|++|.++...+..|..+++|+.|+|++|++++ +++..|..+++|++|+++           +..+++
T Consensus        75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  153 (220)
T 2v9t_B           75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA  153 (220)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence            89999999999999999996555667899999999999999998 655589999999999998           677889


Q ss_pred             CCEEEccCCCCC
Q 035976          189 LKTLDLRDCGIT  200 (203)
Q Consensus       189 L~~L~L~~N~l~  200 (203)
                      |+.|+|++|.+.
T Consensus       154 L~~L~L~~N~~~  165 (220)
T 2v9t_B          154 IQTMHLAQNPFI  165 (220)
T ss_dssp             CCEEECCSSCEE
T ss_pred             CCEEEeCCCCcC
Confidence            999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=128.35  Aligned_cols=137  Identities=22%  Similarity=0.308  Sum_probs=111.2

Q ss_pred             CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976           49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD  119 (203)
Q Consensus        49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  119 (203)
                      | .|..+.|....         ..++.|+++++        .+.+..  +...|..+++|++|++++|.+++..+.    
T Consensus        11 C-~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N--------~l~~~~--~~~~~~~l~~L~~L~L~~N~i~~i~~~----   75 (220)
T 2v70_A           11 C-EGTTVDCSNQKLNKIPEHIPQYTAELRLNNN--------EFTVLE--ATGIFKKLPQLRKINFSNNKITDIEEG----   75 (220)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCEEC--CCCCGGGCTTCCEEECCSSCCCEECTT----
T ss_pred             E-CCCEeEeCCCCcccCccCCCCCCCEEEcCCC--------cCCccC--chhhhccCCCCCEEECCCCcCCEECHH----
Confidence            6 78888886421         12344544444        443332  235688999999999999999996665    


Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCC
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTN  188 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~  188 (203)
                      .+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ +++..|..+++|++|+++           +..+++
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  154 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS  154 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT
T ss_pred             HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC
Confidence            78999999999999999998888889999999999999999999 654589999999999998           778899


Q ss_pred             CCEEEccCCCCCc
Q 035976          189 LKTLDLRDCGITT  201 (203)
Q Consensus       189 L~~L~L~~N~l~~  201 (203)
                      |+.|+|++|.++.
T Consensus       155 L~~L~L~~N~l~c  167 (220)
T 2v70_A          155 LSTLNLLANPFNC  167 (220)
T ss_dssp             CCEEECCSCCEEC
T ss_pred             CCEEEecCcCCcC
Confidence            9999999998753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=1.4e-17  Score=144.78  Aligned_cols=125  Identities=30%  Similarity=0.323  Sum_probs=106.9

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      .++.|+|+++   .+++.        ++..|.++++|++|+|++|.+++..+.    .|.++++|++|+|++|+++...+
T Consensus        53 ~~~~LdLs~N---~i~~l--------~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           53 STKNLDLSFN---PLRHL--------GSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             TCCEEECTTS---CCCEE--------CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCCEEEeeCC---CCCCC--------CHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCH
Confidence            4566666666   54433        467899999999999999999995555    78899999999999999997666


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ..|..+++|++|++++|++++ ++...|+.+++|++|+++            +..+++|++|++++|+|++++
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             HHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            789999999999999999998 776679999999999998            567889999999999998763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=2.8e-16  Score=122.74  Aligned_cols=108  Identities=25%  Similarity=0.308  Sum_probs=96.5

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      .+..|..+++|++|++++|.+++..+.    .+..+++|++|++++|++++..+..+..+++|+.|++++|++++ ++..
T Consensus        75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~  149 (251)
T 3m19_A           75 SAGVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAG  149 (251)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             CHhHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHH
Confidence            466789999999999999999985555    77899999999999999997666678899999999999999998 7766


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      .|..+++|++|+++           +..+++|+.|+|++|.++.
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            79999999999998           6778899999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=8.7e-17  Score=132.17  Aligned_cols=138  Identities=22%  Similarity=0.242  Sum_probs=109.9

Q ss_pred             CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCC-CCCCCCEEEccCCcCCCcccchhh
Q 035976           49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFH-PFEELQSLDLSLNAFEGFYENRAY  118 (203)
Q Consensus        49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~  118 (203)
                      | .+..+.|....         ..++.|+|+++   .+     .+.   .+..+. .+++|++|+|++|.+++..+.   
T Consensus        18 C-~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N---~l-----~~l---~~~~~~~~l~~L~~L~L~~N~i~~i~~~---   82 (361)
T 2xot_A           18 C-ASNILSCSKQQLPNVPQSLPSYTALLDLSHN---NL-----SRL---RAEWTPTRLTNLHSLLLSHNHLNFISSE---   82 (361)
T ss_dssp             E-ETTEEECCSSCCSSCCSSCCTTCSEEECCSS---CC-----CEE---CTTSSSSCCTTCCEEECCSSCCCEECTT---
T ss_pred             E-CCCEEEeCCCCcCccCccCCCCCCEEECCCC---CC-----Ccc---ChhhhhhcccccCEEECCCCcCCccChh---
Confidence            6 67777885421         22445555555   43     333   356676 899999999999999995555   


Q ss_pred             hccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------c---C
Q 035976          119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------L---A  184 (203)
Q Consensus       119 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~---~  184 (203)
                       .|..+++|++|+|++|+++...+..|..+++|+.|+|++|++++ +++..|..+++|++|+|+           +   .
T Consensus        83 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~  160 (361)
T 2xot_A           83 -AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN  160 (361)
T ss_dssp             -TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred             -hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence             78899999999999999997666788999999999999999998 655589999999999998           2   5


Q ss_pred             CCCCCCEEEccCCCCCcCC
Q 035976          185 NLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       185 ~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+++|+.|+|++|+|+.+|
T Consensus       161 ~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          161 KLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             -CTTCCEEECCSSCCCCCC
T ss_pred             cCCcCCEEECCCCCCCccC
Confidence            6899999999999999876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=4.9e-16  Score=122.64  Aligned_cols=109  Identities=24%  Similarity=0.319  Sum_probs=74.2

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..|..+++|++|++++|.++...+.    .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++...
T Consensus        54 ~~~~~~l~~L~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~  128 (270)
T 2o6q_A           54 SKAFHRLTKLRLLYLNDNKLQTLPAG----IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRV  128 (270)
T ss_dssp             TTSSSSCTTCCEEECCSSCCSCCCTT----TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTT
T ss_pred             HHHhcCCCCCCEEECCCCccCeeChh----hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHH
Confidence            45667777777777777777763332    45667777777777777775555566677777777777777776 55445


Q ss_pred             hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      |..+++|++|+++           +..+++|+.|+|++|+|+++|
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            6777777777776           456677777777777776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=1.6e-17  Score=148.04  Aligned_cols=176  Identities=15%  Similarity=0.082  Sum_probs=106.9

Q ss_pred             ChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCeeEEecCCc----------ccccc
Q 035976            8 LQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTRRVMHLLLNDT----------AKFNF   77 (203)
Q Consensus         8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~----------~~l~l   77 (203)
                      .+.+++++++++.+..     .+.+.....|....   ...+ .|.++.+..  .+++.++|.++          ..++|
T Consensus       130 ~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~---~~~~-~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~L  198 (727)
T 4b8c_D          130 VDCTKQALMEMADTLT-----DSKTAKKQQPTGDS---TPSG-TATNSAVST--PLTPKIELFANGKDEANQALLQHKKL  198 (727)
T ss_dssp             --CCCHHHHHHHHHHH-----HHHTTC-----------------------------------------------------
T ss_pred             cccchhhhhhhhhhcc-----cccCcccCCCcCCC---Cccc-cCCCceecC--CccceEEeeCCCCCcchhhHhhcCcc
Confidence            4567889999998875     33323445576532   3556 888877743  55666666444          12233


Q ss_pred             ccCcccccc------ccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCC
Q 035976           78 SYNSLFGVS------LMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISL  151 (203)
Q Consensus        78 ~~~~l~~~~------~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  151 (203)
                      +.+.+.+..      .+.+..+..++.|+.|+|++|.+.. +|.    .+..+++|++|+|++|.++ .+|..|..+++|
T Consensus       199 s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  272 (727)
T 4b8c_D          199 SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL  272 (727)
T ss_dssp             -----------------------CCCCCCEEECTTSCCSC-CCG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC
T ss_pred             CcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CCh----hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC
Confidence            333332211      2346778899999999999999996 787    7778999999999999999 889999999999


Q ss_pred             cEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcC
Q 035976          152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       152 ~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +.|+|++|+|+. +|. .|..+++|++|+|+          ++.+++|+.|+|++|.|++.
T Consensus       273 ~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          273 RVLDLSHNRLTS-LPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CEEECTTSCCSS-CCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CEEeCcCCcCCc-cCh-hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            999999999996 986 89999999999998          78889999999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=5.6e-16  Score=123.02  Aligned_cols=108  Identities=24%  Similarity=0.289  Sum_probs=72.4

Q ss_pred             CccCCCCCCCCEEEccCCc-CCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           90 FSLFHPFEELQSLDLSLNA-FEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      +..+..+++|++|++++|. +....|.    .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ ++..
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~  147 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDD  147 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHh
Confidence            4556666677777777775 5553344    56667777777777777776556666677777777777777776 5544


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      .+..+++|++|+++           +..+++|+.|++++|+|+++
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            56677777777776           55667777777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=130.80  Aligned_cols=139  Identities=28%  Similarity=0.340  Sum_probs=97.4

Q ss_pred             CCCCCCCCccccCCCC-----------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCccc
Q 035976           46 SDCSNDWDGVKCNATT-----------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYE  114 (203)
Q Consensus        46 ~~~c~~w~gv~c~~~~-----------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  114 (203)
                      ...| .|.++ |+...           ..++.|+++++   .+.+.        ++..+.++++|++|++++|.+++..+
T Consensus        27 ~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n---~i~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (353)
T 2z80_A           27 SLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN---RITYI--------SNSDLQRCVNLQALVLTSNGINTIEE   93 (353)
T ss_dssp             CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS---CCCEE--------CTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             CCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCC---cCccc--------CHHHhccCCCCCEEECCCCccCccCH
Confidence            4678 89887 54221           24556666665   43332        34567788888888888888887555


Q ss_pred             chhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe-----------
Q 035976          115 NRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR-----------  182 (203)
Q Consensus       115 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~-----------  182 (203)
                      .    .+..+++|++|++++|+++...+..+..+++|++|++++|++++ +|. ..+..+++|++|+++           
T Consensus        94 ~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  168 (353)
T 2z80_A           94 D----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRK  168 (353)
T ss_dssp             T----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred             h----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHH
Confidence            5    67778888888888888885555557788888888888888876 664 357778888888776           


Q ss_pred             -cCCCCCCCEEEccCCCCCcC
Q 035976          183 -LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       183 -~~~l~~L~~L~L~~N~l~~i  202 (203)
                       +..+++|+.|++++|+++++
T Consensus       169 ~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          169 DFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             TTTTCCEEEEEEEEETTCCEE
T ss_pred             HccCCCCCCEEECCCCCcCcc
Confidence             55666777777777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=7.8e-16  Score=121.66  Aligned_cols=107  Identities=24%  Similarity=0.268  Sum_probs=73.0

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ++...
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~  176 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGV  176 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred             hhHhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHH
Confidence            44566677777777777777764443    46667777777777777775555556677777777777777776 55445


Q ss_pred             hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      +..+++|++|+++           +..+++|+.|++++|.+.+
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            6677777777776           4566777777777777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=1.3e-15  Score=120.44  Aligned_cols=125  Identities=26%  Similarity=0.262  Sum_probs=105.8

Q ss_pred             CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976           61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS  140 (203)
Q Consensus        61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~  140 (203)
                      ...++.++++++   .+.+.          ..+..+++|++|++++|.+++..+.    .+..+++|++|++++|++++.
T Consensus        62 l~~L~~L~l~~n---~l~~~----------~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~  124 (272)
T 3rfs_A           62 LPNVRYLALGGN---KLHDI----------SALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSL  124 (272)
T ss_dssp             CTTCCEEECTTS---CCCCC----------GGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCcEEECCCC---CCCCc----------hhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCcc
Confidence            345778887777   55432          3678899999999999999985554    678899999999999999977


Q ss_pred             ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          141 ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+..+..+++|+.|++++|++++ ++...+..+++|++|+++           +..+++|+.|++++|+|+++|
T Consensus       125 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          125 PDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            77778999999999999999998 776568899999999998           577899999999999998875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=8.7e-17  Score=140.29  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=64.0

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..+..+++|++|++++|.+++..|.    .+..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++ +|...
T Consensus        68 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~  142 (597)
T 3oja_B           68 AALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGI  142 (597)
T ss_dssp             THHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred             HHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHH
Confidence            44455566666666666666664444    55566666666666666665555555666666666666666665 55434


Q ss_pred             hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      |..+++|++|+++           +..+++|+.|+|++|.|+++
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            5566666666665           45555666666666665544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.68  E-value=5.6e-16  Score=130.77  Aligned_cols=136  Identities=26%  Similarity=0.316  Sum_probs=100.1

Q ss_pred             CCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccC
Q 035976           52 WDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG  122 (203)
Q Consensus        52 w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~  122 (203)
                      |..+.|....         ..++.|+++++   .+.+     .   .+..|..+++|++|+|++|.+++..+.    .+.
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n---~i~~-----~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~  120 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMEN---NIQM-----I---QADTFRHLHHLEVLQLGRNSIRQIEVG----AFN  120 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSS---CCCE-----E---CTTTTTTCTTCCEEECCSSCCCEECTT----TTT
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCC---cCce-----E---CHHHcCCCCCCCEEECCCCccCCcChh----hcc
Confidence            5677775421         24555666555   4333     2   467788889999999999998886555    788


Q ss_pred             CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCC
Q 035976          123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLK  190 (203)
Q Consensus       123 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~  190 (203)
                      .+++|++|+|++|.++...+..+..+++|+.|++++|+++. ++...|..+++|++|+++            +..+++|+
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  199 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK  199 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred             CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence            88899999999998886666668888889999999988886 666577788888888775            55666777


Q ss_pred             EEEccCCCCCcCC
Q 035976          191 TLDLRDCGITTIQ  203 (203)
Q Consensus       191 ~L~L~~N~l~~ip  203 (203)
                      .|+|++|+|+++|
T Consensus       200 ~L~L~~n~l~~~~  212 (452)
T 3zyi_A          200 YLNLGMCNIKDMP  212 (452)
T ss_dssp             EEECTTSCCSSCC
T ss_pred             EEECCCCcccccc
Confidence            7777777766654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=6.9e-16  Score=118.52  Aligned_cols=102  Identities=27%  Similarity=0.335  Sum_probs=93.6

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL  176 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L  176 (203)
                      +.+++|++++|.+++..+.    .+..+++|++|++++|++++..|..|..+++|+.|+|++|+++. +|...|..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence            6899999999999985555    78899999999999999998888999999999999999999998 887678999999


Q ss_pred             cEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          177 QLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       177 ~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ++|+++           +..+++|+.|+|++|+|++++
T Consensus       107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence            999998           778899999999999998875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.67  E-value=1.1e-16  Score=132.50  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=58.6

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL  170 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~  170 (203)
                      ..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..|..+..+++|+.|++++|+++. +|...|
T Consensus        63 ~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~  137 (390)
T 3o6n_A           63 ALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIF  137 (390)
T ss_dssp             HHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred             hHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHh
Confidence            3345555566666666655553333    45555566666666665555445555555556666666665554 554334


Q ss_pred             CCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          171 SNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       171 ~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      ..+++|++|+++           +..+++|+.|++++|++++
T Consensus       138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            555556655555           4445555555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.67  E-value=3.2e-16  Score=134.72  Aligned_cols=136  Identities=26%  Similarity=0.341  Sum_probs=107.1

Q ss_pred             CCCCCCccccCCCC-----------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccch
Q 035976           48 CSNDWDGVKCNATT-----------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENR  116 (203)
Q Consensus        48 ~c~~w~gv~c~~~~-----------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  116 (203)
                      .| .|.++ |+...           ..++.++++++   .+.+     .   .+..|.++++|++|++++|.+++..|. 
T Consensus         3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n---~l~~-----~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~-   68 (549)
T 2z81_A            3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN---KITY-----I---GHGDLRACANLQVLILKSSRINTIEGD-   68 (549)
T ss_dssp             EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS---CCCE-----E---CSSTTSSCTTCCEEECTTSCCCEECTT-
T ss_pred             cC-CCCce-EECCCCccccccccCCCCccEEECcCC---ccCc-----c---ChhhhhcCCcccEEECCCCCcCccChh-
Confidence            47 77777 65321           24566666665   4433     2   367788999999999999999986666 


Q ss_pred             hhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC-CcchhhhCCCCCCcEEEEe------------c
Q 035976          117 AYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR------------L  183 (203)
Q Consensus       117 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~lp~~~~~~l~~L~~L~l~------------~  183 (203)
                         .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|. .+..+++|++|+++            +
T Consensus        69 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~  144 (549)
T 2z81_A           69 ---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDF  144 (549)
T ss_dssp             ---TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             ---hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhh
Confidence               78899999999999999998777779999999999999999986 2454 68889999999987            6


Q ss_pred             CCCCCCCEEEccCCCCCc
Q 035976          184 ANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       184 ~~l~~L~~L~L~~N~l~~  201 (203)
                      ..+++|++|++++|++++
T Consensus       145 ~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          145 AGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TTCCEEEEEEEEETTCCE
T ss_pred             hcccccCeeeccCCcccc
Confidence            677888999999988876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=3e-16  Score=115.25  Aligned_cols=125  Identities=26%  Similarity=0.207  Sum_probs=106.9

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      ..++.++++++   .+...    .   .+..+..+++|++|++++|.+++.  .    .+..+++|++|++++|.+++.+
T Consensus        24 ~~L~~L~l~~n---~l~~~----~---i~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~~~~   87 (168)
T 2ell_A           24 AAVRELVLDNC---KSNDG----K---IEGLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIFGGL   87 (168)
T ss_dssp             TSCSEEECCSC---BCBTT----B---CSSCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCCSCC
T ss_pred             ccCCEEECCCC---CCChh----h---HHHHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCchHH
Confidence            56888988888   66511    0   255678899999999999999984  5    8889999999999999999878


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe--------------cCCCCCCCEEEccCCCCCcCC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR--------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~--------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      |..+..+++|+.|++++|++++ ++. ..+..+++|++|+++              +..+++|+.|++++|.+..+|
T Consensus        88 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           88 DMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             HHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            8888889999999999999998 652 378999999999998              567899999999999998876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.67  E-value=1.2e-15  Score=121.18  Aligned_cols=110  Identities=24%  Similarity=0.262  Sum_probs=88.1

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      .+..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++..
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~  171 (285)
T 1ozn_A           97 DPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPER  171 (285)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTT
T ss_pred             CHHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHH
Confidence            356778888889999998888885565    67788888888888888886666667888888888888888887 6655


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+..+++|++|+++           +..+++|+.|++++|+|+++|
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            67888888888887           667778888888888887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.67  E-value=9.6e-16  Score=122.49  Aligned_cols=104  Identities=29%  Similarity=0.319  Sum_probs=70.4

Q ss_pred             CCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976           94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL  173 (203)
Q Consensus        94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l  173 (203)
                      ..+++|++|++++|.++. +|.    .+..+++|++|++++|+++...|..|..+++|+.|++++|++++ +|...|..+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~-l~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l  147 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQS-LPL----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPT  147 (290)
T ss_dssp             SCCTTCCEEECCSSCCSS-CCC----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTC
T ss_pred             CCCCcCCEEECCCCcCCc-Cch----hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccc
Confidence            456666666666666665 555    56667777777777777775555666777777777777777776 555456677


Q ss_pred             CCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          174 RNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       174 ~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ++|+.|+++           +..+++|+.|+|++|+|+.+|
T Consensus       148 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            777777776           455667777777777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.67  E-value=9.8e-16  Score=128.88  Aligned_cols=136  Identities=25%  Similarity=0.336  Sum_probs=98.8

Q ss_pred             CCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccC
Q 035976           52 WDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG  122 (203)
Q Consensus        52 w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~  122 (203)
                      |..|.|...         ...++.++++++   .+..     .   .+..|.++++|++|+|++|.++...+.    .|.
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n---~i~~-----~---~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~  109 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHEN---QIQI-----I---KVNSFKHLRHLEILQLSRNHIRTIEIG----AFN  109 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSC---CCCE-----E---CTTTTSSCSSCCEEECCSSCCCEECGG----GGT
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCC---cCCe-----e---CHHHhhCCCCCCEEECCCCcCCccChh----hcc
Confidence            557778541         123455555555   3333     2   356788888899999999988885555    788


Q ss_pred             CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCC
Q 035976          123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLK  190 (203)
Q Consensus       123 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~  190 (203)
                      .+++|++|+|++|+++...+..|..+++|+.|++++|+++. ++...|..+++|++|+++            +..+++|+
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  188 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR  188 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence            88889999998888886655678888888888888888887 665577788888888776            55666777


Q ss_pred             EEEccCCCCCcCC
Q 035976          191 TLDLRDCGITTIQ  203 (203)
Q Consensus       191 ~L~L~~N~l~~ip  203 (203)
                      .|+|++|+|+.+|
T Consensus       189 ~L~L~~n~l~~~~  201 (440)
T 3zyj_A          189 YLNLAMCNLREIP  201 (440)
T ss_dssp             EEECTTSCCSSCC
T ss_pred             eecCCCCcCcccc
Confidence            7777777766654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=8.4e-16  Score=133.71  Aligned_cols=125  Identities=27%  Similarity=0.250  Sum_probs=94.1

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.++++++   .+.+.        .+..|.++++|++|++++|.+++..|.    .|..+++|++|++++|.+++..
T Consensus        32 ~~l~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~   96 (606)
T 3vq2_A           32 SSTKNIDLSFN---PLKIL--------KSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFS   96 (606)
T ss_dssp             TTCCEEECTTS---CCCEE--------CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCC
T ss_pred             CCcCEEECCCC---CcCEe--------ChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccC
Confidence            45777777777   54433        355777888888888888888875565    6778888888888888888776


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      |..|..+++|++|++++|.+++ ++...++.+++|++|+++            ++.+++|++|++++|+++++
T Consensus        97 p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             hhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            7788888888888888888877 554467888888888876            55677788888888877765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.66  E-value=1.7e-15  Score=116.92  Aligned_cols=128  Identities=21%  Similarity=0.153  Sum_probs=105.0

Q ss_pred             CCccccCCCCCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEE
Q 035976           52 WDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILN  131 (203)
Q Consensus        52 w~gv~c~~~~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~  131 (203)
                      |..-.|.     .+.++.+++   .+...         |..+  .++|++|++++|.+++..|.    .+..+++|++|+
T Consensus        14 ~~~~~Cs-----~~~v~c~~~---~l~~i---------p~~~--~~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~   70 (229)
T 3e6j_A           14 PSQCSCS-----GTTVDCRSK---RHASV---------PAGI--PTNAQILYLHDNQITKLEPG----VFDSLINLKELY   70 (229)
T ss_dssp             CTTCEEE-----TTEEECTTS---CCSSC---------CSCC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEE
T ss_pred             CCCCEEe-----CCEeEccCC---CcCcc---------CCCC--CCCCCEEEcCCCccCccCHH----HhhCccCCcEEE
Confidence            3445663     345777776   55443         3323  27899999999999997676    889999999999


Q ss_pred             ccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCc
Q 035976          132 LEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       132 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      +++|+++...+..|..+++|+.|+|++|++++ ++...|..+++|++|+++          +..+++|+.|+|++|+|++
T Consensus        71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A           71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS  149 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence            99999986666678999999999999999998 776678999999999998          5677899999999999988


Q ss_pred             CC
Q 035976          202 IQ  203 (203)
Q Consensus       202 ip  203 (203)
                      +|
T Consensus       150 ~~  151 (229)
T 3e6j_A          150 IP  151 (229)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.66  E-value=1.4e-15  Score=128.89  Aligned_cols=125  Identities=26%  Similarity=0.325  Sum_probs=82.7

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      .++.|+++++   .+.+     .   .+..|..+++|++|+|++|.+++..|.    .+..+++|++|++++|.++...+
T Consensus        33 ~l~~L~L~~n---~l~~-----~---~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           33 ETRLLDLGKN---RIKT-----L---NQDEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             TCSEEECCSS---CCCE-----E---CTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCT
T ss_pred             CCcEEECCCC---ccce-----E---CHhHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEECCCCcCCccCc
Confidence            4556666655   4333     2   355677777777777777777775565    67777777777777777775444


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ..|..+++|+.|++++|++++ ++...|..+++|++|+++           +..+++|+.|+|++|+++++|
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             ccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            456677777777777777776 433466777777777775           556666777777777666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=1.1e-15  Score=114.86  Aligned_cols=100  Identities=22%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ  177 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~  177 (203)
                      ++++|++++|.+++..+..   .+..+++|++|++++|++++..|..|..+++|+.|+|++|++++ ++...|..+++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~  105 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCC
T ss_pred             CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc-cCHHHhcCCCCCC
Confidence            4455555555554422210   13444555555555555554444445555555555555555554 3332344455555


Q ss_pred             EEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          178 LLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       178 ~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      +|+++           +..+++|++|+|++|.+++
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            55544           4556677777777777653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=7.4e-16  Score=121.78  Aligned_cols=124  Identities=30%  Similarity=0.330  Sum_probs=71.8

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      .++.++++++   .+.+.        .+..|.++++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+
T Consensus        29 ~l~~L~ls~n---~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           29 STKNLDLSFN---PLRHL--------GSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             TCCEEECTTC---CCCEE--------CTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECT
T ss_pred             CccEEECCCC---ccccc--------CHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccCh
Confidence            4666666666   44332        233556666666666666666654333    45566666666666666665555


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      ..+..+++|+.|++++|.+++ ++...+..+++|++|+++            +..+++|+.|++++|+|+++
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             hhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            556666666666666666665 433345566666666665            33445666666666665544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.65  E-value=6.5e-16  Score=129.93  Aligned_cols=127  Identities=25%  Similarity=0.277  Sum_probs=96.2

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.|+++++   .+.+.        .+..|.++++|++|++++|.+.+.+++.   .+..+++|++|++++|.+++..
T Consensus        30 ~~l~~L~Ls~n---~i~~~--------~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~~l~~L~~L~Ls~n~l~~~~   95 (455)
T 3v47_A           30 AHVNYVDLSLN---SIAEL--------NETSFSRLQDLQFLKVEQQTPGLVIRNN---TFRGLSSLIILKLDYNQFLQLE   95 (455)
T ss_dssp             TTCCEEECCSS---CCCEE--------CTTTTSSCTTCCEEECCCCSTTCEECTT---TTTTCTTCCEEECTTCTTCEEC
T ss_pred             CccCEEEecCC---ccCcC--------ChhHhccCccccEEECcCCcccceECcc---cccccccCCEEeCCCCccCccC
Confidence            34666666666   44332        3667888888999999988887655431   6778888899999888888777


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      |..+..+++|++|++++|++++.++. ..+..+++|++|+++            +..+++|++|++++|+++++
T Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            88888888888999988888874443 127888888888887            45678888888888888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.62  E-value=5.2e-15  Score=119.75  Aligned_cols=136  Identities=20%  Similarity=0.253  Sum_probs=92.9

Q ss_pred             CCCCCCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhh
Q 035976           48 CSNDWDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAY  118 (203)
Q Consensus        48 ~c~~w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  118 (203)
                      .| .|+.+.|...         ...++.++++++   .+.+.        .+..|..+++|++|++++|.+++..|.   
T Consensus        30 ~c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n---~i~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~---   94 (330)
T 1xku_A           30 QC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---KITEI--------KDGDFKNLKNLHTLILINNKISKISPG---   94 (330)
T ss_dssp             EE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSS---CCCCB--------CTTTTTTCTTCCEEECCSSCCCCBCTT---
T ss_pred             cC-CCeEEEecCCCccccCccCCCCCeEEECCCC---cCCEe--------ChhhhccCCCCCEEECCCCcCCeeCHH---
Confidence            36 7888888641         124555666555   44332        355788888999999999988886676   


Q ss_pred             hccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCC
Q 035976          119 DSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LAN  185 (203)
Q Consensus       119 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~  185 (203)
                       .+..+++|++|++++|.++ .+|..+.  ++|+.|++++|++++ ++...+..+++|++|+++             +..
T Consensus        95 -~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  169 (330)
T 1xku_A           95 -AFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  169 (330)
T ss_dssp             -TTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             -HhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence             7888888888888888887 4554443  577777777777776 554467777777777765             344


Q ss_pred             CCCCCEEEccCCCCCcCC
Q 035976          186 LTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       186 l~~L~~L~L~~N~l~~ip  203 (203)
                      +++|+.|++++|+++.+|
T Consensus       170 l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          170 MKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             CTTCCEEECCSSCCCSCC
T ss_pred             CCCcCEEECCCCccccCC
Confidence            566666666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=6.6e-15  Score=110.88  Aligned_cols=97  Identities=23%  Similarity=0.317  Sum_probs=57.6

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ  177 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~  177 (203)
                      .|++|++++|.++. +|.    .+..+++|++|++++|.+++..+..|..+++|+.|+|++|++++ ++...|..+++|+
T Consensus        32 ~l~~L~L~~n~i~~-ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~  105 (193)
T 2wfh_A           32 DVTELYLDGNQFTL-VPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLR  105 (193)
T ss_dssp             TCCEEECCSSCCCS-CCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCC
T ss_pred             CCCEEECCCCcCch-hHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCCC
Confidence            55566666666554 444    55555666666666666655444555566666666666666655 4433555566666


Q ss_pred             EEEEe-----------cCCCCCCCEEEccCCCCC
Q 035976          178 LLDLR-----------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       178 ~L~l~-----------~~~l~~L~~L~L~~N~l~  200 (203)
                      +|+++           +..+++|+.|+|++|.+.
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66655           455667777777777653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.62  E-value=4.3e-16  Score=125.66  Aligned_cols=69  Identities=23%  Similarity=0.378  Sum_probs=34.3

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCC-CCcEEeccCCCCCC
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLI-SLTTLILRENNIEG  163 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~  163 (203)
                      ..+..+++|++|++++|.+++.+|.    .+..+++|++|++++|.+++.+|..+..++ +|+.|++++|++++
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             HHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence            3444455555555555555544444    444455555555555555444454444444 45555555444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=3.2e-15  Score=131.77  Aligned_cols=125  Identities=26%  Similarity=0.293  Sum_probs=75.8

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.|+++++   .+.+.        ++..|.++++|++|++++|.+++..|.    .+..+++|++|++++|.++...
T Consensus        25 ~~l~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~   89 (680)
T 1ziw_A           25 TNITVLNLTHN---QLRRL--------PAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLS   89 (680)
T ss_dssp             TTCSEEECCSS---CCCCC--------CGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCC
T ss_pred             CCCcEEECCCC---CCCCc--------CHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccC
Confidence            45677777776   44332        244566666666666666666665454    5556666666666666666433


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +..|..+++|++|++++|++++ +++..|..+++|++|+++           +..+++|++|++++|+++++
T Consensus        90 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           90 DKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             hhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            3356666666666666666665 443356666666666665           34555666666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=1.3e-14  Score=107.31  Aligned_cols=94  Identities=22%  Similarity=0.273  Sum_probs=55.3

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ +|...
T Consensus        45 ~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~  119 (177)
T 2o6r_A           45 HGVFDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGI  119 (177)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT
T ss_pred             HHHhcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHH
Confidence            34455666666666666666653332    34556666666666666665444445566666666666666665 55422


Q ss_pred             hCCCCCCcEEEEecCCCCCCCEEEccCCCCCc
Q 035976          170 LSNLRNLQLLDLRLANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       170 ~~~l~~L~~L~l~~~~l~~L~~L~L~~N~l~~  201 (203)
                                   +..+++|+.|+|++|.+++
T Consensus       120 -------------~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          120 -------------FDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             -------------TTTCTTCCEEECCSSCBCC
T ss_pred             -------------hcCCcccCEEEecCCCeec
Confidence                         3445666677777776654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.61  E-value=4e-15  Score=125.11  Aligned_cols=108  Identities=27%  Similarity=0.271  Sum_probs=96.3

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      .+..+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ +++.
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~  365 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQ  365 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE-ECTT
T ss_pred             chhhcccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc-cChh
Confidence            367788999999999999999997676    88899999999999999998778889999999999999999998 5435


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      .|..+++|++|+++           +..+++|+.|+|++|+|++
T Consensus       366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            89999999999998           5788999999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.2e-15  Score=113.64  Aligned_cols=105  Identities=21%  Similarity=0.249  Sum_probs=88.8

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCC-CCCCcchhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENN-IEGSRTIEG  169 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~lp~~~  169 (203)
                      ..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..|..+..+++|+.|++++|+ ++. +|  .
T Consensus        82 ~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~--~  154 (197)
T 4ezg_A           82 NPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM--P  154 (197)
T ss_dssp             GGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG--G
T ss_pred             hhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH--h
Confidence            4678899999999999999886676    88899999999999999997788889999999999999998 766 76  5


Q ss_pred             hCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          170 LSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       170 ~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +..+++|++|+++         +..+++|+.|++++|+|.+.
T Consensus       155 l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~~  196 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK  196 (197)
T ss_dssp             GGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-----
T ss_pred             hcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCCc
Confidence            8899999999998         67788999999999998763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=1.8e-15  Score=114.85  Aligned_cols=124  Identities=20%  Similarity=0.205  Sum_probs=104.6

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.|+++++   .+.+.        ++..|..+++|++|++++|.+++..+.    .+..+++|++|++++|++++..
T Consensus        52 ~~L~~L~l~~n---~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~  116 (208)
T 2o6s_A           52 TSLTQLYLGGN---KLQSL--------PNGVFNKLTSLTYLNLSTNQLQSLPNG----VFDKLTQLKELALNTNQLQSLP  116 (208)
T ss_dssp             TTCSEEECCSS---CCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccCcEEECCCC---ccCcc--------ChhhcCCCCCcCEEECCCCcCCccCHh----HhcCccCCCEEEcCCCcCcccC
Confidence            45777777777   55433        456688999999999999999985444    5789999999999999999766


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----cCCCCCCCEEEccCCCCCc
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----~~~l~~L~~L~L~~N~l~~  201 (203)
                      +..+..+++|+.|++++|++++ ++...+..+++|++|+++    ...+++|+.|+++.|++++
T Consensus       117 ~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          117 DGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTT
T ss_pred             HhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCc
Confidence            6678999999999999999998 776568999999999998    6678899999999998875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=1.3e-14  Score=115.95  Aligned_cols=106  Identities=24%  Similarity=0.161  Sum_probs=94.0

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..+..+++|++|++++|++++..+.    .+..+++|++|++++|+++...+..|..+++|+.|++++|++++ +|...
T Consensus        93 ~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~  167 (290)
T 1p9a_G           93 PLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGL  167 (290)
T ss_dssp             CCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTT
T ss_pred             chhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHH
Confidence            45678899999999999999995555    78999999999999999997766778899999999999999998 88767


Q ss_pred             hCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCC
Q 035976          170 LSNLRNLQLLDLR----------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~  200 (203)
                      |..+++|++|+++          +..+++|+.|+|++|.+.
T Consensus       168 ~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            8899999999998          555678999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=8.2e-15  Score=112.48  Aligned_cols=119  Identities=21%  Similarity=0.236  Sum_probs=99.6

Q ss_pred             EEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhh
Q 035976           66 HLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL  145 (203)
Q Consensus        66 ~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~  145 (203)
                      .++++++   .+...         |..+.  ..+++|++++|.+++..+..   .+..+++|++|++++|.+++..+..|
T Consensus        15 ~l~~s~n---~l~~i---------P~~~~--~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~   77 (220)
T 2v70_A           15 TVDCSNQ---KLNKI---------PEHIP--QYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAF   77 (220)
T ss_dssp             EEECCSS---CCSSC---------CSCCC--TTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTT
T ss_pred             EeEeCCC---CcccC---------ccCCC--CCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHh
Confidence            6777777   55443         33332  35689999999999854431   47889999999999999997777789


Q ss_pred             cCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          146 NTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       146 ~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      ..+++|+.|++++|++++ ++...|..+++|++|+++           +..+++|+.|+|++|+|+++
T Consensus        78 ~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           78 EGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             TTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             CCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence            999999999999999998 776679999999999998           77889999999999999887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=7.3e-15  Score=108.76  Aligned_cols=66  Identities=24%  Similarity=0.276  Sum_probs=39.4

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI  167 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~  167 (203)
                      ++|++|++++|.+++..+.    .+..+++|++|++++|.++...+..+..+++|+.|++++|++++ ++.
T Consensus        28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~   93 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPN   93 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred             CCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCH
Confidence            4566666666666653333    45566666666666666664444445666666666666666665 443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.8e-15  Score=113.00  Aligned_cols=121  Identities=21%  Similarity=0.275  Sum_probs=101.8

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      +++.++++++   .+...         + .+..+++|++|++++|.++. + +    .+..+++|++|++++|.+++..|
T Consensus        45 ~L~~L~l~~n---~i~~l---------~-~l~~l~~L~~L~l~~n~~~~-~-~----~l~~l~~L~~L~l~~n~l~~~~~  105 (197)
T 4ezg_A           45 SLTYITLANI---NVTDL---------T-GIEYAHNIKDLTINNIHATN-Y-N----PISGLSNLERLRIMGKDVTSDKI  105 (197)
T ss_dssp             TCCEEEEESS---CCSCC---------T-TGGGCTTCSEEEEESCCCSC-C-G----GGTTCTTCCEEEEECTTCBGGGS
T ss_pred             CccEEeccCC---CccCh---------H-HHhcCCCCCEEEccCCCCCc-c-h----hhhcCCCCCEEEeECCccCcccC
Confidence            4667777766   54432         2 57888999999999997765 3 3    77889999999999999997778


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ..+..+++|+.|++++|++++..+. .+..+++|++|+++          +..+++|+.|++++|+|++++
T Consensus       106 ~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             CCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT
T ss_pred             hhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH
Confidence            8899999999999999999975554 89999999999998          567889999999999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.60  E-value=8.2e-15  Score=127.44  Aligned_cols=124  Identities=22%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      .++.++++++   .+.+.        .+..|.++++|++|++++|.+++..|.    .|..+++|++|++++|.+++..|
T Consensus        34 ~l~~L~Ls~n---~i~~~--------~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~   98 (606)
T 3t6q_A           34 STECLEFSFN---VLPTI--------QNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIFMAE   98 (606)
T ss_dssp             TCCEEECTTC---CCSEE--------CTTTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCSEECT
T ss_pred             cCcEEEccCC---ccCcC--------ChhHhccCccceEEECCCCccceeChh----hccCccccCeeeCCCCcccccCh
Confidence            5667777766   44432        466788888888888888888886666    78888888888888888887777


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      ..+..+++|++|++++|++++ ++...+..+++|++|+++           +..+++|+.|++++|+++++
T Consensus        99 ~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A           99 TALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             TTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred             hhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence            788888888888888888887 644467888888888887           33467788888888887765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=6.2e-15  Score=133.32  Aligned_cols=135  Identities=23%  Similarity=0.198  Sum_probs=91.0

Q ss_pred             CCCccccCCCCCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcc-cchhhhccCCCCCCCE
Q 035976           51 DWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFY-ENRAYDSNGSLKQLKI  129 (203)
Q Consensus        51 ~w~gv~c~~~~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~l~~l~~L~~  129 (203)
                      .|..|.+  ...+++.|+|+++   .+.+.        .+..|.++++|++|++++|.+.+.+ |.    .+.++++|++
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N---~i~~i--------~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~   77 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFN---YIRTV--------TASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRI   77 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESC---CCCEE--------CSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCE
T ss_pred             CCCCCCC--CCCCcCEEECCCC---cCCcc--------ChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCE
Confidence            5777777  3567888888887   55433        3556677777777777777555545 33    5667777777


Q ss_pred             EEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe------------cCCCCCCCEEEccC
Q 035976          130 LNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR------------LANLTNLKTLDLRD  196 (203)
Q Consensus       130 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~  196 (203)
                      |+|++|.+++..|..|..+++|+.|+|++|.+++.++. ..+..+++|++|+++            ++.+++|+.|+|++
T Consensus        78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence            77777777766677777777777777777777664443 126677777777776            45666777777777


Q ss_pred             CCCCcC
Q 035976          197 CGITTI  202 (203)
Q Consensus       197 N~l~~i  202 (203)
                      |.|+++
T Consensus       158 N~i~~~  163 (844)
T 3j0a_A          158 NQIFLV  163 (844)
T ss_dssp             SCCCCC
T ss_pred             CcCCee
Confidence            776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.60  E-value=7.5e-15  Score=119.01  Aligned_cols=134  Identities=25%  Similarity=0.340  Sum_probs=101.1

Q ss_pred             CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976           49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD  119 (203)
Q Consensus        49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  119 (203)
                      | .|..+.|....         ..++.++++++   .+.     +.   .+..|.++++|++|++++|.+++..|.    
T Consensus        33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n---~i~-----~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~----   96 (332)
T 2ft3_A           33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNN---DIS-----EL---RKDDFKGLQHLYALVLVNNKISKIHEK----   96 (332)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSS---CCC-----EE---CTTTTTTCTTCCEEECCSSCCCEECGG----
T ss_pred             c-cCCEEECCCCCccccCCCCCCCCeEEECCCC---cCC-----cc---CHhHhhCCCCCcEEECCCCccCccCHh----
Confidence            6 78888886421         24455555555   333     22   366789999999999999999986676    


Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCCC
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LANL  186 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~l  186 (203)
                      .+..+++|++|++++|.++ .+|..+.  ++|+.|++++|++++ ++...|..+++|++|+++             +..+
T Consensus        97 ~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence            8899999999999999998 5666554  789999999999987 776578899999999987             2333


Q ss_pred             CCCCEEEccCCCCCcCC
Q 035976          187 TNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       187 ~~L~~L~L~~N~l~~ip  203 (203)
                       +|+.|++++|+++++|
T Consensus       173 -~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          173 -KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             -CCSCCBCCSSBCSSCC
T ss_pred             -ccCEEECcCCCCCccC
Confidence             6677777777766654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=9e-15  Score=126.07  Aligned_cols=125  Identities=30%  Similarity=0.319  Sum_probs=83.6

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      ..++.|+++++   .+.+.        .+..|.++++|++|++++|.+++..+.    .+..+++|++|++++|.++...
T Consensus        28 ~~l~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~   92 (570)
T 2z63_A           28 FSTKNLDLSFN---PLRHL--------GSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLA   92 (570)
T ss_dssp             SSCCEEECCSC---CCCEE--------CTTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEEC
T ss_pred             ccccEEEccCC---ccCcc--------ChhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCccC
Confidence            35677777776   44432        345667777777777777777764444    5667777777777777777655


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      |..|..+++|++|++++|++++ ++...++.+++|++|+++            +..+++|++|++++|+++++
T Consensus        93 ~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           93 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             HhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            5667777777777777777776 554356777777777776            34456677777777776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.59  E-value=7.2e-15  Score=131.65  Aligned_cols=107  Identities=27%  Similarity=0.286  Sum_probs=94.6

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      .+..+..+++|++|++++|.+++.+|.    .+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|. 
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-  508 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-  508 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh-
Confidence            367788889999999999999988887    888899999999999999988999999999999999999999987775 


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCC
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~  200 (203)
                      .++.+++|++|+++           +..+++|+.|++++|+++
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            78899999999997           678889999999999887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.58  E-value=6.1e-15  Score=118.08  Aligned_cols=62  Identities=26%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~  182 (203)
                      .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ ++...+..+++|++|+++
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECT
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECC
Confidence            34444444455554444444334444444555555555555444 332234444555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=5.5e-15  Score=111.09  Aligned_cols=118  Identities=25%  Similarity=0.316  Sum_probs=95.4

Q ss_pred             CCCCCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976           49 SNDWDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD  119 (203)
Q Consensus        49 c~~w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  119 (203)
                      | .|..+.|...         ...++.|+++++   .+.+.     .  ....+..+++|++|++++|.+++..|.    
T Consensus         8 C-~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n---~i~~~-----~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~----   72 (192)
T 1w8a_A            8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---ELGRI-----S--SDGLFGRLPHLVKLELKRNQLTGIEPN----   72 (192)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSC---CCCSB-----C--CSCSGGGCTTCCEEECCSSCCCCBCTT----
T ss_pred             E-CCCEEEcCCCCcCcCccCCCCCCCEEECCCC---cCCcc-----C--CccccccCCCCCEEECCCCCCCCcCHh----
Confidence            7 7888888642         124555655555   44332     2  123588999999999999999997777    


Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~  182 (203)
                      .+..+++|++|++++|++++..+..|..+++|+.|++++|++++..| ..+..+++|++|+++
T Consensus        73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECT
T ss_pred             HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeC
Confidence            89999999999999999998777789999999999999999998445 589999999999997

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=6.7e-15  Score=105.91  Aligned_cols=116  Identities=28%  Similarity=0.281  Sum_probs=91.1

Q ss_pred             CCeeEEecCCccccccc-cCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFS-YNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS  140 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~-~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~  140 (203)
                      .+++.++++++   .+. +.        .+..+..+++|++|++++|.+++.  .    .+..+++|++|++++|.+++.
T Consensus        17 ~~l~~L~l~~n---~l~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~   79 (149)
T 2je0_A           17 SDVKELVLDNS---RSNEGK--------LEGLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGG   79 (149)
T ss_dssp             GGCSEEECTTC---BCBTTB--------CCSCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSC
T ss_pred             ccCeEEEccCC---cCChhH--------HHHHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccch
Confidence            45778888888   665 22        256778899999999999999884  4    788899999999999999977


Q ss_pred             ChhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe--------------cCCCCCCCEEEcc
Q 035976          141 ILPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR--------------LANLTNLKTLDLR  195 (203)
Q Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~--------------~~~l~~L~~L~L~  195 (203)
                      +|..+..+++|+.|++++|++++ ++. ..+..+++|++|+++              +..+++|+.|+++
T Consensus        80 ~~~~~~~l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             THHHHHHCTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHHHhhhCCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888889999999999999988 541 367777777777776              3445667777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.58  E-value=6.3e-15  Score=114.11  Aligned_cols=106  Identities=16%  Similarity=0.216  Sum_probs=63.1

Q ss_pred             CccCCCCCCCCEEEccCCc-CCCcccchhhhccCCCCCCCEEEccC-CCCCCCChhhhcCCCCCcEEeccCCCCCCCcch
Q 035976           90 FSLFHPFEELQSLDLSLNA-FEGFYENRAYDSNGSLKQLKILNLEA-NHFNDSILPYLNTLISLTTLILRENNIEGSRTI  167 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~  167 (203)
                      +..|..+++|++|++++|. ++...+.    .+..+++|++|++++ |.++...+..|..+++|+.|++++|++++ +|.
T Consensus        48 ~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~  122 (239)
T 2xwt_C           48 SHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD  122 (239)
T ss_dssp             TTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC
T ss_pred             HHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc
Confidence            4456666777777777775 6653333    455666667777766 66664444556666666666666666665 552


Q ss_pred             hhhCCCCCCc---EEEEe------------cCCCCCCC-EEEccCCCCCcC
Q 035976          168 EGLSNLRNLQ---LLDLR------------LANLTNLK-TLDLRDCGITTI  202 (203)
Q Consensus       168 ~~~~~l~~L~---~L~l~------------~~~l~~L~-~L~L~~N~l~~i  202 (203)
                        +..+++|+   +|+++            +..+++|+ .|++++|+|+.+
T Consensus       123 --~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i  171 (239)
T 2xwt_C          123 --LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV  171 (239)
T ss_dssp             --CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred             --cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence              55555555   55554            34455555 666666655544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.57  E-value=1.4e-14  Score=125.77  Aligned_cols=101  Identities=28%  Similarity=0.302  Sum_probs=92.0

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL  176 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L  176 (203)
                      +.+++|+|++|.|++..+.    .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++ +|...|.++++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence            4799999999999995555    78999999999999999997667789999999999999999998 887789999999


Q ss_pred             cEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          177 QLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       177 ~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      ++|+++           ++.+++|++|+|++|+|+++
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence            999998           78899999999999999765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.57  E-value=1.3e-14  Score=116.21  Aligned_cols=123  Identities=25%  Similarity=0.352  Sum_probs=101.6

Q ss_pred             cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCC-CChhhhcCCCCC
Q 035976           73 AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-SILPYLNTLISL  151 (203)
Q Consensus        73 ~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L  151 (203)
                      +.|+++++.+.+..  ....+..+++|++|++++|.+.+..+.    .+..+++|++|++++|.+++ ..|..+..+++|
T Consensus       104 ~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A          104 EHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             CEEECTTSEEESST--TTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CEEECCCCcccccc--cchhhhhccCCCEEECCCCcCCccchh----hcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            33344444433332  125788999999999999999986676    78899999999999999986 578889999999


Q ss_pred             cEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          152 TTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       152 ~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +.|++++|++++ +++..+..+++|++|+++           +..+++|+.|+|++|+|+++
T Consensus       178 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          178 TFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            999999999998 644589999999999998           67789999999999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=108.74  Aligned_cols=116  Identities=24%  Similarity=0.257  Sum_probs=95.3

Q ss_pred             CCCCCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976           49 SNDWDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD  119 (203)
Q Consensus        49 c~~w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  119 (203)
                      | .|..+.|...         ...++.|+++++   .+...         +..|..+++|++|++++|.+++..+.    
T Consensus        10 C-~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n---~i~~i---------p~~~~~l~~L~~L~Ls~N~i~~i~~~----   72 (193)
T 2wfh_A           10 C-LDTVVRCSNKGLKVLPKGIPRDVTELYLDGN---QFTLV---------PKELSNYKHLTLIDLSNNRISTLSNQ----   72 (193)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCCEEECCSS---CCCSC---------CGGGGGCTTCCEEECCSSCCCCCCTT----
T ss_pred             e-CCCEEEcCCCCCCcCCCCCCCCCCEEECCCC---cCchh---------HHHhhcccCCCEEECCCCcCCEeCHh----
Confidence            6 6777777541         124555555555   44322         46889999999999999999996555    


Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~  182 (203)
                      .|..+++|++|+|++|.++...|..|..+++|+.|+|++|+++. +|...|..+++|+.|+++
T Consensus        73 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECC
T ss_pred             HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeC
Confidence            78999999999999999998888889999999999999999998 887679999999999997

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.57  E-value=1.7e-14  Score=122.26  Aligned_cols=107  Identities=23%  Similarity=0.268  Sum_probs=57.8

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..|.++++|++|+|++|.++...+.    .+..+++|++|++++|.++...|..+..+++|+.|++++|.+++ ++...
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~  147 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRA  147 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTS
T ss_pred             hhhhhCCccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhh
Confidence            44555666666666666666552222    34555666666666666555445555555555555555555554 33234


Q ss_pred             hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      |..+++|++|+++           +..+++|+.|+|++|.+++
T Consensus       148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            5555555555554           3444555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.56  E-value=2.8e-14  Score=117.98  Aligned_cols=121  Identities=21%  Similarity=0.191  Sum_probs=92.7

Q ss_pred             cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCc
Q 035976           73 AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT  152 (203)
Q Consensus        73 ~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  152 (203)
                      +.|+++++.+.+.   ++..|..+++|++|++++|.+++..|.    .+..+++|++|++++|.++...+..+..+++|+
T Consensus        72 ~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           72 ELLNLNDLQIEEI---DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             SEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cEEECCCCccccc---ChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            3344455544333   456889999999999999999996665    788999999999999999954444568899999


Q ss_pred             EEeccCCCCCCCcchhhhCCCCCCcEEEEe--------cCCCCCCCEEEccCCCCCc
Q 035976          153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR--------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       153 ~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~  201 (203)
                      .|++++|++++ ++...+..+++|++|+++        +..+++|+.|++++|.+++
T Consensus       145 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          145 TLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             EEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             EEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence            99999999998 655578999999999998        4455666666666665544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=3.3e-14  Score=116.79  Aligned_cols=102  Identities=25%  Similarity=0.221  Sum_probs=91.6

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccC-CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNG-SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN  175 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~  175 (203)
                      +.++.|+|++|.+++..+.    .+. .+++|++|+|++|+++...+..|..+++|+.|+|++|+++. ++...|..+++
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTT
T ss_pred             CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcC
Confidence            4589999999999995554    566 89999999999999997777789999999999999999998 77667999999


Q ss_pred             CcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          176 LQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       176 L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      |++|+|+           +..+++|+.|+|++|+|+++|
T Consensus       114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            9999998           788899999999999999876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.56  E-value=2.9e-14  Score=120.28  Aligned_cols=89  Identities=24%  Similarity=0.165  Sum_probs=51.6

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..|.++++|++|+|++|.++...+.    .+..+++|++|++++|.++...+..|..+++|+.|++++|+..+.++...
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~  191 (452)
T 3zyi_A          116 VGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA  191 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred             hhhccCcccCCEEECCCCcCCccChh----hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence            56677777777777777777764333    56667777777777777764444445555555555555532222244334


Q ss_pred             hCCCCCCcEEEEe
Q 035976          170 LSNLRNLQLLDLR  182 (203)
Q Consensus       170 ~~~l~~L~~L~l~  182 (203)
                      |..+++|++|+++
T Consensus       192 ~~~l~~L~~L~L~  204 (452)
T 3zyi_A          192 FEGLFNLKYLNLG  204 (452)
T ss_dssp             TTTCTTCCEEECT
T ss_pred             ccCCCCCCEEECC
Confidence            4444555554444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=2.4e-14  Score=120.37  Aligned_cols=106  Identities=25%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCC---------------------
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL---------------------  148 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l---------------------  148 (203)
                      +..|.++++|++|+|++|.++...+.    .+..+++|++|++++|.++...+..|..+                     
T Consensus       105 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~  180 (440)
T 3zyj_A          105 IGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA  180 (440)
T ss_dssp             GGGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred             hhhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence            44556666666666666666653332    45556666666666666554333344444                     


Q ss_pred             ----CCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          149 ----ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       149 ----~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                          ++|+.|++++|+++. +|  .+..+++|++|+++           +..+++|+.|+|++|+|+++
T Consensus       181 ~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLRE-IP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSS-CC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             hhcccccCeecCCCCcCcc-cc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence                445555555555444 44  24445555555554           45555566666666655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.56  E-value=1.7e-14  Score=113.89  Aligned_cols=107  Identities=26%  Similarity=0.302  Sum_probs=51.8

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC-ChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS-ILPYLNTLISLTTLILRENNIEGSRTIEGL  170 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~  170 (203)
                      .+.++++|++|++++|.+++..+.    .+..+++|++|++++|.++.. +|..+..+++|+.|++++|++++ ++...+
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~  169 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDL  169 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGG
T ss_pred             hhcCCccccEEECCCCCccccCch----hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHh
Confidence            344444444444444444443222    344455555555555555432 34455555555555555555554 332233


Q ss_pred             CCCCCCc----EEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          171 SNLRNLQ----LLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       171 ~~l~~L~----~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ..+++|+    .|+++          .....+|+.|+|++|+|+++|
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~  216 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP  216 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred             hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC
Confidence            3333333    34443          122236777777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.55  E-value=3e-14  Score=124.24  Aligned_cols=121  Identities=21%  Similarity=0.191  Sum_probs=94.9

Q ss_pred             cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCc
Q 035976           73 AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT  152 (203)
Q Consensus        73 ~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  152 (203)
                      +.|+++++.+.+.   ++..|..+++|++|+|++|.+++..|.    .+..+++|++|++++|.++...+..|..+++|+
T Consensus        78 ~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           78 ELLNLNDLQIEEI---DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             SEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cEEECCCCCCCCC---ChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            3445555554443   366889999999999999999996665    778999999999999999965555578999999


Q ss_pred             EEeccCCCCCCCcchhhhCCCCCCcEEEEe--------cCCCCCCCEEEccCCCCCc
Q 035976          153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR--------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       153 ~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~  201 (203)
                      .|++++|.+++ +++..|..+++|++|+++        +..+++|+.|++++|.+++
T Consensus       151 ~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          151 TLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             EEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             EEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence            99999999998 555579999999999998        4455666666666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.5e-14  Score=104.02  Aligned_cols=101  Identities=27%  Similarity=0.368  Sum_probs=90.5

Q ss_pred             CCCCCEEEccCCcCC-CcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCC
Q 035976           96 FEELQSLDLSLNAFE-GFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR  174 (203)
Q Consensus        96 l~~L~~L~L~~N~l~-~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~  174 (203)
                      .++|+.|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|. .+..++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCP   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCT
T ss_pred             CccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCC
Confidence            478999999999998 66887    888999999999999999965  7789999999999999999986664 778899


Q ss_pred             CCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976          175 NLQLLDLR------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       175 ~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +|++|+++            +..+++|++|++++|+|+++|
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            99999998            677899999999999998875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.55  E-value=1.2e-14  Score=126.46  Aligned_cols=108  Identities=28%  Similarity=0.314  Sum_probs=61.9

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCC-CChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-SILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      ..+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++ +++..
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~  492 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGV  492 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTT
T ss_pred             hhhhccccCCEEECcCCCCCccchh----hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cChhh
Confidence            3455566666666666666654444    55556666666666666554 245555556666666666666655 33235


Q ss_pred             hCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          170 LSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       170 ~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +..+++|++|+++           +..+++|+.|+|++|+|+.+|
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p  537 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK  537 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence            5566666666665           455556666666666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.55  E-value=1.7e-14  Score=117.17  Aligned_cols=99  Identities=27%  Similarity=0.322  Sum_probs=61.9

Q ss_pred             CCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976           94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL  173 (203)
Q Consensus        94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l  173 (203)
                      .++++|++|++++|.++. +|.    .+..+++|++|++++|.+++ +|+.+..+++|+.|++++|.+.+.+|. .+..+
T Consensus       180 ~~l~~L~~L~L~~n~l~~-lp~----~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l  252 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIRS-LPA----SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGR  252 (328)
T ss_dssp             EESTTCCEEEEEEECCCC-CCG----GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCC
T ss_pred             ccCCCCCEEECcCCCcCc-chH----hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH-HhcCC
Confidence            346666666666666663 555    56666666666666666663 455566666666666666666665554 56666


Q ss_pred             CCCcEEEEe-----------cCCCCCCCEEEccCCCC
Q 035976          174 RNLQLLDLR-----------LANLTNLKTLDLRDCGI  199 (203)
Q Consensus       174 ~~L~~L~l~-----------~~~l~~L~~L~L~~N~l  199 (203)
                      ++|++|+++           +..+++|+.|+|++|++
T Consensus       253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            666666665           45556666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.55  E-value=9.1e-15  Score=117.70  Aligned_cols=83  Identities=24%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             CCCCCCCEEEccCCcCCCcccchhhhccCCC-----CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCC--cc
Q 035976           94 HPFEELQSLDLSLNAFEGFYENRAYDSNGSL-----KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGS--RT  166 (203)
Q Consensus        94 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--lp  166 (203)
                      ..+++|++|++++|.+++. |.    .+..+     ++|++|++++|++++..|..+..+++|+.|++++|++.+.  ++
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             hcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            6677777777777777764 44    33333     5666666666666655555666666666666666665442  12


Q ss_pred             hhhh--CCCCCCcEEEEe
Q 035976          167 IEGL--SNLRNLQLLDLR  182 (203)
Q Consensus       167 ~~~~--~~l~~L~~L~l~  182 (203)
                      . .+  ..+++|++|+++
T Consensus       193 ~-~~~~~~l~~L~~L~L~  209 (312)
T 1wwl_A          193 S-ALCPLKFPTLQVLALR  209 (312)
T ss_dssp             H-HSCTTSCTTCCEEECT
T ss_pred             H-HHHhccCCCCCEEECC
Confidence            1 22  455555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.55  E-value=7e-15  Score=118.39  Aligned_cols=110  Identities=21%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             CccCCCCCCCCEEEccCCcCCCc--ccchhhhcc--CCCCCCCEEEccCCCCCC--CCh-hhhcCCCCCcEEeccCCCCC
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGF--YENRAYDSN--GSLKQLKILNLEANHFND--SIL-PYLNTLISLTTLILRENNIE  162 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~l--~~l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~L~~N~l~  162 (203)
                      +..+..+++|++|++++|.+.+.  ++.    .+  ..+++|++|++++|++++  .++ ..+..+++|+.|++++|+++
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  241 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR  241 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            45556666666666666665543  122    22  556666666666666652  111 22345566666666666666


Q ss_pred             CCcchhhhCCCCCCcEEEEe---cCCC-----CCCCEEEccCCCCCcCC
Q 035976          163 GSRTIEGLSNLRNLQLLDLR---LANL-----TNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       163 ~~lp~~~~~~l~~L~~L~l~---~~~l-----~~L~~L~L~~N~l~~ip  203 (203)
                      +..|...+..+++|++|+++   +..+     ++|+.|+|++|+|+++|
T Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p  290 (312)
T 1wwl_A          242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNP  290 (312)
T ss_dssp             SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCC
T ss_pred             cccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCCh
Confidence            53322234455666666665   1111     45666666666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.54  E-value=1.2e-13  Score=110.27  Aligned_cols=117  Identities=34%  Similarity=0.359  Sum_probs=67.1

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.|+++++   .+.+.         +. +..+++|++|++++|.+++ ++     .+..+++|++|++++|.+++. 
T Consensus        68 ~~L~~L~L~~n---~l~~~---------~~-l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~i~~~-  127 (291)
T 1h6t_A           68 PNVTKLFLNGN---KLTDI---------KP-LANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISDI-  127 (291)
T ss_dssp             TTCCEEECCSS---CCCCC---------GG-GTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCCC-
T ss_pred             CCCCEEEccCC---ccCCC---------cc-cccCCCCCEEECCCCcCCC-Ch-----hhccCCCCCEEECCCCcCCCC-
Confidence            45677777766   44432         11 5566666666666666665 33     455566666666666666532 


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                       +.+..+++|+.|++++|++++ ++  .+..+++|++|+++         +..+++|+.|++++|+|+.+
T Consensus       128 -~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          128 -NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             -GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred             -hhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC
Confidence             345556666666666666655 42  45556666666655         44555566666666655544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.53  E-value=1.5e-13  Score=110.51  Aligned_cols=99  Identities=26%  Similarity=0.409  Sum_probs=55.0

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                      +..+++|++|++++|.+++ ++     .+..+++|++|++++|.+++. +. +..+++|+.|++++|++++ ++.  +..
T Consensus       103 ~~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~  171 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITD-VT-----PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP--LAN  171 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG--GTT
T ss_pred             hcCCCCCCEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh--hcC
Confidence            4445555555555555554 22     344555555555555555532 22 5555666666666666655 442  556


Q ss_pred             CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +++|++|+++         +..+++|+.|+|++|+|+++
T Consensus       172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc
Confidence            6666666665         44555666666666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.53  E-value=2.1e-13  Score=109.72  Aligned_cols=99  Identities=33%  Similarity=0.488  Sum_probs=59.9

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                      +..+++|++|++++|.+++ ++     .+..+++|++|++++|.+++ ++. +..+++|+.|++++|++++ ++.  +..
T Consensus        81 ~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~  149 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP--LAG  149 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--GGG
T ss_pred             HccCCCCCEEEccCCcCCC-ch-----hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc--ccC
Confidence            5566666666666666665 32     45556666666666666663 222 5666666666666666665 442  556


Q ss_pred             CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +++|++|+++         +..+++|+.|++++|+|+++
T Consensus       150 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             CCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcC
Confidence            6666666665         45556666666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=118.25  Aligned_cols=70  Identities=20%  Similarity=0.194  Sum_probs=38.5

Q ss_pred             CccCCCCCCCCEEEccCCcCCC--cccchhhhccCCCCCCCEEEccCCCCCCCChhh-hcCCCCCcEEeccCCCCCC
Q 035976           90 FSLFHPFEELQSLDLSLNAFEG--FYENRAYDSNGSLKQLKILNLEANHFNDSILPY-LNTLISLTTLILRENNIEG  163 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~  163 (203)
                      +..+..+++|++|++++|.+++  .+|.    .+..+++|++|++++|.+++.+|.. +..+++|+.|++++|++++
T Consensus       341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          341 FENCGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             TTTCCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             hhhhccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence            4455666666666666666665  2333    4556666666666666666534432 4444445555555554443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=3.3e-14  Score=104.26  Aligned_cols=102  Identities=29%  Similarity=0.334  Sum_probs=90.3

Q ss_pred             CCCCCCEEEccCCcCC-CcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976           95 PFEELQSLDLSLNAFE-GFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNL  173 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~-~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l  173 (203)
                      ..++|++|++++|.++ +.+|.    .+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++.+|. .+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL   94 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred             CcccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence            3478999999999998 56887    778899999999999999965  7889999999999999999986664 77789


Q ss_pred             CCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976          174 RNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       174 ~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ++|++|+++            +..+++|+.|++++|+|+++|
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            999999998            567889999999999998875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=116.40  Aligned_cols=108  Identities=21%  Similarity=0.257  Sum_probs=81.8

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChh--hhcCCCCCcEEeccCCC-CCCCc
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP--YLNTLISLTTLILRENN-IEGSR  165 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~-l~~~l  165 (203)
                      .+..|.++++|++|++++|.+++ +|..   .+..+++|++|++++|+++. +|.  .+..+++|+.|++++|. ++. +
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~~-~~~~---~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~-~  165 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYNYLSN-LSSS---WFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTK-I  165 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSS-CCHH---HHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCE-E
T ss_pred             CHhhcCCCCCCCEEECCCCcCCc-CCHh---HhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccc-c
Confidence            35678889999999999999988 4441   47888999999999998884 444  67888889999998884 555 6


Q ss_pred             chhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcC
Q 035976          166 TIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       166 p~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +...+..+++|++|+++           +..+++|++|++++|+++.+
T Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  213 (353)
T 2z80_A          166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL  213 (353)
T ss_dssp             CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH
T ss_pred             CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc
Confidence            54578888888888887           55566666777766666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.52  E-value=1.1e-13  Score=111.92  Aligned_cols=106  Identities=22%  Similarity=0.237  Sum_probs=68.8

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..+..+++|++|++++|.++. +|.    .+  .++|++|++++|.+++..|..+..+++|+.|++++|++++ ++...
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~-l~~----~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~  235 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITT-IPQ----GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS  235 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS-CCS----SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTT
T ss_pred             hhhccCCCCcCEEECCCCcccc-CCc----cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhh
Confidence            4455666677777777766665 444    32  2566677777777666556666777777777777777766 44335


Q ss_pred             hCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          170 LSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       170 ~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +..+++|++|+++          +..+++|+.|++++|+|+++|
T Consensus       236 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence            6667777777776          455666777777777776653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=1.4e-13  Score=101.54  Aligned_cols=98  Identities=20%  Similarity=0.162  Sum_probs=77.0

Q ss_pred             eEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh
Q 035976           65 MHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY  144 (203)
Q Consensus        65 ~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  144 (203)
                      +.++++++   .+...         |..+  .++|++|+|++|.+++..|.    .+..+++|++|+|++|++++..+..
T Consensus        12 ~~l~~s~n---~l~~i---------p~~~--~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~   73 (170)
T 3g39_A           12 TTVDCSGK---SLASV---------PTGI--PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGV   73 (170)
T ss_dssp             TEEECTTS---CCSSC---------CSCC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             CEEEeCCC---CcCcc---------CccC--CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhh
Confidence            56777777   55543         3333  37899999999999996676    8899999999999999999766667


Q ss_pred             hcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEE
Q 035976          145 LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL  181 (203)
Q Consensus       145 ~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l  181 (203)
                      |..+++|+.|+|++|++++ ++...|..+++|++|++
T Consensus        74 f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           74 FDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred             ccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEe
Confidence            8999999999999999998 77645555555444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1.7e-13  Score=101.47  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=77.3

Q ss_pred             eEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh
Q 035976           65 MHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY  144 (203)
Q Consensus        65 ~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  144 (203)
                      +.++++++   .+...         |..+.  ++|++|+|++|.+++..|.    .+..+++|++|+|++|++++..+..
T Consensus        15 ~~l~~~~n---~l~~i---------P~~~~--~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~   76 (174)
T 2r9u_A           15 TLVNCQNI---RLASV---------PAGIP--TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGV   76 (174)
T ss_dssp             SEEECCSS---CCSSC---------CSCCC--TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cEEEeCCC---CCCcc---------CCCcC--CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhH
Confidence            56777777   55443         33333  7899999999999996676    8899999999999999999765556


Q ss_pred             hcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976          145 LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       145 ~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~  182 (203)
                      |..+++|+.|+|++|++++ +|...|..+++|++|+++
T Consensus        77 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECC
T ss_pred             hCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeC
Confidence            7899999999999999998 776446665555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.50  E-value=1e-13  Score=120.48  Aligned_cols=110  Identities=22%  Similarity=0.234  Sum_probs=96.0

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      .+..|.++++|++|++++|.+++..|.    .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..
T Consensus        73 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~  147 (606)
T 3t6q_A           73 HEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLP  147 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCC
T ss_pred             ChhhccCccccCeeeCCCCcccccChh----hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcc
Confidence            477899999999999999999997777    89999999999999999997667889999999999999999998 5322


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCC--EEEccCCCCCcCC
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLK--TLDLRDCGITTIQ  203 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~--~L~L~~N~l~~ip  203 (203)
                      .+..+++|++|+++           +..+++|+  .|++++|++++++
T Consensus       148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~  195 (606)
T 3t6q_A          148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE  195 (606)
T ss_dssp             TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred             cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence            46669999999998           67788888  8999999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.50  E-value=1.3e-14  Score=127.44  Aligned_cols=88  Identities=11%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             CccCC--CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCC-CCC-CChhhhcCC------CCCcEEeccCC
Q 035976           90 FSLFH--PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANH-FND-SILPYLNTL------ISLTTLILREN  159 (203)
Q Consensus        90 ~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~N  159 (203)
                      |..+.  ++++|++|++++|.+.+.+|.    .+..+++|++|++++|+ +++ .+|..+..+      ++|+.|++++|
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence            56666  788888888888888887787    77888888888888887 776 677766665      77777777777


Q ss_pred             CCCCCcch-hhhCCCCCCcEEEEe
Q 035976          160 NIEGSRTI-EGLSNLRNLQLLDLR  182 (203)
Q Consensus       160 ~l~~~lp~-~~~~~l~~L~~L~l~  182 (203)
                      +++. +|. ..+..+++|++|+++
T Consensus       316 ~l~~-ip~~~~l~~l~~L~~L~L~  338 (636)
T 4eco_A          316 NLKT-FPVETSLQKMKKLGMLECL  338 (636)
T ss_dssp             CCSS-CCCHHHHTTCTTCCEEECC
T ss_pred             cCCc-cCchhhhccCCCCCEEeCc
Confidence            7774 763 257777777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.50  E-value=5.3e-14  Score=115.01  Aligned_cols=106  Identities=18%  Similarity=0.218  Sum_probs=64.0

Q ss_pred             CCCCCccccCCCCCCeeEE--ec-CCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCC
Q 035976           49 SNDWDGVKCNATTRRVMHL--LL-NDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLK  125 (203)
Q Consensus        49 c~~w~gv~c~~~~~~v~~l--~l-~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~  125 (203)
                      | .+..|.|.+.  +++++  ++ .+.+.|++++|.+...   ++..|.++++|++|+|++|.+.+.+|..   .|.+++
T Consensus         9 C-~~~~v~C~~~--~Lt~iP~~l~~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~   79 (350)
T 4ay9_X            9 C-SNRVFLCQES--KVTEIPSDLPRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLP   79 (350)
T ss_dssp             E-ETTEEEEEST--TCCSCCTTCCTTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCT
T ss_pred             e-eCCEEEecCC--CCCccCcCcCCCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcch
Confidence            7 7888888642  11111  01 1223334444444332   4677899999999999999987766652   445566


Q ss_pred             CCCE-EEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976          126 QLKI-LNLEANHFNDSILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus       126 ~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                      +++. +.+..|+++...|..|..+++|+.|++++|+++.
T Consensus        80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             hhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence            6554 4445566665555566666666666666666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=2.9e-14  Score=129.10  Aligned_cols=109  Identities=19%  Similarity=0.200  Sum_probs=78.2

Q ss_pred             CccCC--CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCC-CCC-CChhhhcCCC-------CCcEEeccC
Q 035976           90 FSLFH--PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANH-FND-SILPYLNTLI-------SLTTLILRE  158 (203)
Q Consensus        90 ~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~  158 (203)
                      |..++  ++++|++|+|++|.+.+.+|.    .+..+++|++|++++|+ +++ .+|..+..++       +|+.|++++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChH----HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence            55655  888888888888888887887    77888888888888887 776 6676555444       777777777


Q ss_pred             CCCCCCcch-hhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          159 NNIEGSRTI-EGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       159 N~l~~~lp~-~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      |+++. +|. ..+..+++|+.|+++         ++.+++|+.|+|++|+|+.+|
T Consensus       558 N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp  611 (876)
T 4ecn_A          558 NNLEE-FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP  611 (876)
T ss_dssp             SCCCB-CCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCC
T ss_pred             CcCCc-cCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccch
Confidence            77774 763 257777777777776         455566666667666666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.49  E-value=1.2e-13  Score=121.76  Aligned_cols=126  Identities=21%  Similarity=0.191  Sum_probs=100.0

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.|+++++   .+.+.        .+..+.++++|++|++++|.++...+.    .+..+++|++|++++|.+++..
T Consensus        49 ~~L~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           49 SQLTSLDVGFN---TISKL--------EPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             TTCSEEECCSS---CCCCC--------CTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCC
T ss_pred             CcCcEEECCCC---ccCcc--------CHHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccC
Confidence            35667777666   44433        467788899999999999999984333    5888999999999999998776


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCCCCCCCEEEccCCCCCcCC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      |..|..+++|++|++++|.+++ ++...+..+++|++|+++             ...+++|+.|++++|++++++
T Consensus       114 ~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  187 (680)
T 1ziw_A          114 NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS  187 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred             hhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence            7788999999999999999988 443478899999999987             224578999999999887753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.49  E-value=3.5e-13  Score=116.50  Aligned_cols=124  Identities=21%  Similarity=0.283  Sum_probs=67.7

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCc--ccchhhhccCCCCCCCEEEccCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGF--YENRAYDSNGSLKQLKILNLEANHFND  139 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~l~~l~~L~~L~L~~n~l~~  139 (203)
                      ..++.++++++   .+.+.        .+..+..+++|++|++++|.+++.  +|.    .+..+++|++|++++|.+++
T Consensus       353 ~~L~~L~l~~n---~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          353 SSFTFLNFTQN---VFTDS--------VFQGCSTLKRLQTLILQRNGLKNFFKVAL----MTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             CCCCEEECCSS---CCCTT--------TTTTCCSCSSCCEEECCSSCCCBTTHHHH----TTTTCTTCCEEECTTSCCBS
T ss_pred             CCceEEECCCC---ccccc--------hhhhhcccCCCCEEECCCCCcCCcccchh----hhcCCCCCCEEECCCCcCCC
Confidence            44566666665   44332        245566667777777777776652  223    45666667777777766665


Q ss_pred             CChh-hhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          140 SILP-YLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       140 ~~p~-~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+|. .+..+++|+.|++++|++++.+|. .+.  ++|++|+++          +..+++|+.|+|++|+|+.+|
T Consensus       418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          418 HAYDRTCAWAESILVLNLSSNMLTGSVFR-CLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             CCSSCCCCCCTTCCEEECCSSCCCGGGGS-SCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred             ccChhhhcCcccCCEEECCCCCCCcchhh-hhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCC
Confidence            3443 345555566666666655542221 111  455555554          234455555555555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.49  E-value=7.6e-14  Score=119.91  Aligned_cols=126  Identities=24%  Similarity=0.339  Sum_probs=92.5

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCC-C
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND-S  140 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~-~  140 (203)
                      .+++.++++++   .+.+.        .+..|..+++|++|++++|.+++..|.    .+..+++|++|++++|.+++ .
T Consensus        50 ~~L~~L~Ls~n---~i~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~  114 (549)
T 2z81_A           50 ANLQVLILKSS---RINTI--------EGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLG  114 (549)
T ss_dssp             TTCCEEECTTS---CCCEE--------CTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSSSC
T ss_pred             CcccEEECCCC---CcCcc--------ChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccccc
Confidence            35666666666   44432        356788888999999999998885554    58888889999999888875 3


Q ss_pred             ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------c------------------------CC
Q 035976          141 ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------L------------------------AN  185 (203)
Q Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~------------------------~~  185 (203)
                      .|..+..+++|+.|++++|.+.+.+|...+..+++|++|+++           +                        ..
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  194 (549)
T 2z81_A          115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI  194 (549)
T ss_dssp             SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred             hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhh
Confidence            566778888888888888874444665567778888888776           2                        23


Q ss_pred             CCCCCEEEccCCCCCcC
Q 035976          186 LTNLKTLDLRDCGITTI  202 (203)
Q Consensus       186 l~~L~~L~L~~N~l~~i  202 (203)
                      +++|+.|++++|+++++
T Consensus       195 l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          195 LSSVRYLELRDTNLARF  211 (549)
T ss_dssp             TTTBSEEEEESCBCTTC
T ss_pred             cccccEEEccCCccccc
Confidence            66778888888877764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.48  E-value=6.3e-14  Score=108.44  Aligned_cols=104  Identities=15%  Similarity=0.186  Sum_probs=52.3

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCC---EEEccCC-CCCCCChhhhcCCCCCc-EEeccCCCCCCCcc
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLK---ILNLEAN-HFNDSILPYLNTLISLT-TLILRENNIEGSRT  166 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~lp  166 (203)
                      .|.++++|++|++++|.+++ +|     .+..+++|+   +|++++| .++...+..|..+++|+ .|++++|+++. +|
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~-lp-----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~  172 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKM-FP-----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQ  172 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCS-CC-----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-EC
T ss_pred             HhCCCCCCCEEeCCCCCCcc-cc-----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cC
Confidence            34444444444444444444 33     233334443   5555555 45433333455555555 55555555553 55


Q ss_pred             hhhhCCCCCCcEEEEe------------cCCC-CCCCEEEccCCCCCcCC
Q 035976          167 IEGLSNLRNLQLLDLR------------LANL-TNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       167 ~~~~~~l~~L~~L~l~------------~~~l-~~L~~L~L~~N~l~~ip  203 (203)
                      ...|.. ++|+.|+++            +..+ ++|+.|++++|+|+++|
T Consensus       173 ~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          173 GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence            433333 455555554            4455 66666666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=6.1e-14  Score=103.76  Aligned_cols=118  Identities=20%  Similarity=0.236  Sum_probs=87.2

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCC-CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPF-EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .++.++++++   .+...         +. +..+ ++|++|++++|.+++ + .    .+..+++|++|++++|.+++..
T Consensus        20 ~L~~L~l~~n---~l~~i---------~~-~~~~~~~L~~L~Ls~N~l~~-~-~----~l~~l~~L~~L~Ls~N~l~~~~   80 (176)
T 1a9n_A           20 RDRELDLRGY---KIPVI---------EN-LGATLDQFDAIDFSDNEIRK-L-D----GFPLLRRLKTLLVNNNRICRIG   80 (176)
T ss_dssp             SCEEEECTTS---CCCSC---------CC-GGGGTTCCSEEECCSSCCCE-E-C----CCCCCSSCCEEECCSSCCCEEC
T ss_pred             CceEEEeeCC---CCchh---------HH-hhhcCCCCCEEECCCCCCCc-c-c----ccccCCCCCEEECCCCcccccC
Confidence            4677777777   55432         22 3333 488899999998887 3 4    7788888999999999888543


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe--------------cCCCCCCCEEEccCCCCC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR--------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~--------------~~~l~~L~~L~L~~N~l~  200 (203)
                      +..+..+++|+.|++++|+++. +|. ..+..+++|++|+++              +..+++|+.|+++.|.+.
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            3445788889999999998876 663 357788888888887              456778888888888653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.48  E-value=4.4e-13  Score=106.98  Aligned_cols=101  Identities=33%  Similarity=0.356  Sum_probs=89.6

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS  171 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~  171 (203)
                      .+..+++|++|++++|.+++ ++     .+..+++|++|++++|++++.  +.+..+++|+.|++++|++++ ++.  +.
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~-~~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~  175 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LA  175 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GT
T ss_pred             hhccCCCCCEEECCCCcCCC-Ch-----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hc
Confidence            48889999999999999998 43     678899999999999999964  678899999999999999998 664  89


Q ss_pred             CCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          172 NLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       172 ~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+++|++|+++         +..+++|+.|++++|+++..|
T Consensus       176 ~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred             CCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccCCc
Confidence            99999999998         788899999999999886543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.48  E-value=2e-13  Score=107.47  Aligned_cols=117  Identities=24%  Similarity=0.290  Sum_probs=92.3

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      ..++.|+++++   .+.+.         +. +..+++|++|++++|.+++ +|.     +.. ++|++|++++|++++ +
T Consensus        63 ~~L~~L~L~~N---~i~~~---------~~-l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~  121 (263)
T 1xeu_A           63 TNLKELHLSHN---QISDL---------SP-LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-T  121 (263)
T ss_dssp             TTCCEEECCSS---CCCCC---------GG-GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-S
T ss_pred             CCCCEEECCCC---ccCCC---------hh-hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-C
Confidence            45667777666   55443         22 7888999999999999988 553     233 889999999999985 3


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                       +.+..+++|+.|++++|++++ ++  .+..+++|++|+++         +..+++|+.|++++|.++..|
T Consensus       122 -~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          122 -DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred             -hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCCc
Confidence             458889999999999999988 65  58889999999998         677888999999999887653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.48  E-value=1e-13  Score=118.23  Aligned_cols=103  Identities=26%  Similarity=0.193  Sum_probs=73.9

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccC-CCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNG-SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      +..+..+++|++|++++|.+++..|.    .+. .+++|++|+|++|.+++. | .+..+++|+.|+|++|.+++ +|+ 
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~-  208 (487)
T 3oja_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGP-  208 (487)
T ss_dssp             GBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECG-
T ss_pred             chhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCH-
Confidence            44566677777888888877776555    554 577788888888877743 2 23357778888888888877 665 


Q ss_pred             hhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCC
Q 035976          169 GLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       169 ~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~  200 (203)
                      .+..+++|+.|+++          +..+++|+.|++++|.+.
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            57777888888876          556677888888888775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.48  E-value=3.6e-13  Score=121.78  Aligned_cols=125  Identities=23%  Similarity=0.278  Sum_probs=103.5

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      .++.++++++   .+.+.        .+..+..+++|++|++++|.+++..|.    .+..+++|++|++++|.+++..|
T Consensus       267 ~L~~L~Ls~n---~l~~~--------~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          267 SVRHLDLSHG---FVFSL--------NSRVFETLKDLKVLNLAYNKINKIADE----AFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             CCCEEECTTC---CCCEE--------CSCCSSSCCCCCEEEEESCCCCEECTT----TTTTCSSCCEEEEESCCCSCCCS
T ss_pred             CccEEECCCC---ccccc--------ChhhhhcCCCCCEEECCCCcCCCCChH----HhcCCCCCCEEECCCCCCCccCH
Confidence            4666766666   44332        467788999999999999999987676    88899999999999999998888


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------cCCCCCCCEEEccCCCCCcCC
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ..+..+++|+.|++++|.+++ ++...|..+++|++|+++      +..+++|+.|++++|+++.+|
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~  397 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP  397 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred             HHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence            899999999999999999988 665578999999999998      445677888888888877664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.48  E-value=1.1e-13  Score=118.41  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=102.2

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.++++++   .+.+.        .+..|..+++|++|++++|.+++..|.    .+..+++|++|++++|+++ .+
T Consensus        21 ~~L~~L~Ls~n---~i~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~l   84 (520)
T 2z7x_B           21 QKTTILNISQN---YISEL--------WTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKLV-KI   84 (520)
T ss_dssp             TTCSEEECCSS---CCCCC--------CHHHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTTCCEEECCSSCCC-EE
T ss_pred             ccccEEECCCC---ccccc--------ChhhccccccccEEecCCCccCCcChH----HhhcccCCCEEecCCCcee-ec
Confidence            56788888887   65543        356789999999999999999997677    8999999999999999999 56


Q ss_pred             hhhhcCCCCCcEEeccCCCCCC-CcchhhhCCCCCCcEEEEe--------cCCCCCC--CEEEccCCCC
Q 035976          142 LPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR--------LANLTNL--KTLDLRDCGI  199 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~-~lp~~~~~~l~~L~~L~l~--------~~~l~~L--~~L~L~~N~l  199 (203)
                      |..  .+++|++|++++|++++ .+|. .|+.+++|++|+++        +..+++|  +.|++++|.+
T Consensus        85 p~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           85 SCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             ECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred             Ccc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccchhhccccccceeeEEEeecccc
Confidence            766  89999999999999987 4565 89999999999998        5667778  9999999988

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.48  E-value=2e-13  Score=110.60  Aligned_cols=77  Identities=30%  Similarity=0.272  Sum_probs=46.7

Q ss_pred             CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEc
Q 035976          125 KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDL  194 (203)
Q Consensus       125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L  194 (203)
                      ++|++|++++|.+++..+..+..+++|+.|++++|++++ ++...+..+++|++|+++          +..+++|+.|++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l  271 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL  271 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEEC
Confidence            345555555566655555556666666666666666666 443356666666666665          445556666666


Q ss_pred             cCCCCCcC
Q 035976          195 RDCGITTI  202 (203)
Q Consensus       195 ~~N~l~~i  202 (203)
                      ++|+|+++
T Consensus       272 ~~N~l~~~  279 (332)
T 2ft3_A          272 HTNNITKV  279 (332)
T ss_dssp             CSSCCCBC
T ss_pred             CCCCCCcc
Confidence            66666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.48  E-value=4.2e-13  Score=105.61  Aligned_cols=116  Identities=26%  Similarity=0.391  Sum_probs=96.1

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.++++++   .+...          +.+..+++|++|++++|.+++ ++     .+..+++|++|++++|++++ +
T Consensus        41 ~~L~~L~l~~n---~i~~l----------~~l~~l~~L~~L~L~~N~i~~-~~-----~l~~l~~L~~L~L~~N~l~~-l  100 (263)
T 1xeu_A           41 SGVQNFNGDNS---NIQSL----------AGMQFFTNLKELHLSHNQISD-LS-----PLKDLTKLEELSVNRNRLKN-L  100 (263)
T ss_dssp             TTCSEEECTTS---CCCCC----------TTGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCSC-C
T ss_pred             CcCcEEECcCC---Ccccc----------hHHhhCCCCCEEECCCCccCC-Ch-----hhccCCCCCEEECCCCccCC-c
Confidence            34667777776   55432          257889999999999999998 55     36789999999999999995 4


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      |. +.. ++|+.|++++|++++ ++  .+..+++|++|+++         +..+++|+.|++++|+|+++
T Consensus       101 ~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          101 NG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC
T ss_pred             Cc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch
Confidence            44 333 899999999999998 75  58999999999998         67889999999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=4.5e-13  Score=98.76  Aligned_cols=105  Identities=21%  Similarity=0.237  Sum_probs=76.5

Q ss_pred             CCCCCccccCCCCCCeeEEe---cCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCC
Q 035976           49 SNDWDGVKCNATTRRVMHLL---LNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLK  125 (203)
Q Consensus        49 c~~w~gv~c~~~~~~v~~l~---l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~  125 (203)
                      | .|+.+.|.+..  ++.+-   ....+.|++++|.+.+.   .+..|.++++|++|+|++|++++..+.    .+..++
T Consensus         9 C-~~~~l~~s~n~--l~~ip~~~~~~l~~L~L~~N~i~~~---~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~   78 (170)
T 3g39_A            9 C-SGTTVDCSGKS--LASVPTGIPTTTQVLYLYDNQITKL---EPGVFDRLTQLTRLDLDNNQLTVLPAG----VFDKLT   78 (170)
T ss_dssp             E-ETTEEECTTSC--CSSCCSCCCTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCT
T ss_pred             c-CCCEEEeCCCC--cCccCccCCCCCcEEEcCCCcCCcc---ChhhhcCcccCCEEECCCCCcCccChh----hccCCC
Confidence            6 78888886421  11110   12223334444444333   467889999999999999999985444    578899


Q ss_pred             CCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976          126 QLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus       126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                      +|++|+|++|++++..+..|..+++|+.|+|++|.++.
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99999999999997666678999999999999999986

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.47  E-value=1.9e-13  Score=118.17  Aligned_cols=119  Identities=23%  Similarity=0.200  Sum_probs=96.0

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      ..++.++++++   .+.+.        ++..|.++++|++|++++|.+++..|.    .+..+++|++|++++|.++ .+
T Consensus        52 ~~L~~L~Ls~N---~i~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~l  115 (562)
T 3a79_B           52 PRTKALSLSQN---SISEL--------RMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NI  115 (562)
T ss_dssp             TTCCEEECCSS---CCCCC--------CGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EE
T ss_pred             CCcCEEECCCC---Ccccc--------ChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-cc
Confidence            34556666655   44432        457889999999999999999986676    7889999999999999998 56


Q ss_pred             hhhhcCCCCCcEEeccCCCCCC-CcchhhhCCCCCCcEEEEe--------cCCCCCC--CEEEccCCCC
Q 035976          142 LPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR--------LANLTNL--KTLDLRDCGI  199 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~-~lp~~~~~~l~~L~~L~l~--------~~~l~~L--~~L~L~~N~l  199 (203)
                      |..  .+++|++|++++|++++ ++|. .|..+++|++|+++        +..+++|  +.|++++|++
T Consensus       116 p~~--~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          116 SCC--PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CSC--CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             Ccc--ccccCCEEECCCCCccccCchH-hhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence            665  89999999999999987 2344 79999999999998        4555566  9999999988

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=111.13  Aligned_cols=111  Identities=19%  Similarity=0.159  Sum_probs=60.8

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCc--ccchhhhccCCCCCCCEEEccCCCCCCCChh----hhcCCCCCcEEeccCCCCC
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGF--YENRAYDSNGSLKQLKILNLEANHFNDSILP----YLNTLISLTTLILRENNIE  162 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~  162 (203)
                      .+..+..+++|++|++++|.+.+.  ++..  ..+..+++|++|++++|+++ .++.    .+..+++|+.|++++|+++
T Consensus       161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~  237 (310)
T 4glp_A          161 SCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLR  237 (310)
T ss_dssp             CTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred             hHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCC
Confidence            355667777777777777776542  1110  02245566666666666665 2232    2345566666666666666


Q ss_pred             CCcchhhhCCC---CCCcEEEEe--------cCCCCCCCEEEccCCCCCcCC
Q 035976          163 GSRTIEGLSNL---RNLQLLDLR--------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       163 ~~lp~~~~~~l---~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +..|. .+..+   ++|++|+++        -.-.++|+.|+|++|+|+++|
T Consensus       238 ~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~  288 (310)
T 4glp_A          238 ATVNP-SAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAP  288 (310)
T ss_dssp             CCCCS-CCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCC
T ss_pred             ccchh-hHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCc
Confidence            63343 34443   466666665        111245666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.47  E-value=5.5e-14  Score=112.98  Aligned_cols=103  Identities=18%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC--Ch--hhhcCCCCCcEEeccCCCCCCCcchh---
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS--IL--PYLNTLISLTTLILRENNIEGSRTIE---  168 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~--~p--~~~~~l~~L~~L~L~~N~l~~~lp~~---  168 (203)
                      +++|++|++++|.+++..+.    .+..+++|++|++++|++.+.  ++  ..+..+++|++|++++|+++. ++..   
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~  218 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA  218 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH
Confidence            34444444444444443333    444444455555555444321  11  112344445555555555543 3221   


Q ss_pred             hhCCCCCCcEEEEe-----------cCCC---CCCCEEEccCCCCCcCC
Q 035976          169 GLSNLRNLQLLDLR-----------LANL---TNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l---~~L~~L~L~~N~l~~ip  203 (203)
                      .+..+++|++|+++           +..+   ++|++|+|++|+|+.+|
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence            13455666666665           2222   46667777777666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=117.83  Aligned_cols=126  Identities=23%  Similarity=0.198  Sum_probs=100.9

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      ..++.|+++++   .+.+.        .+..|.++++|++|++++|.+++..|.    .+..+++|++|++++|.++...
T Consensus        52 ~~L~~L~Ls~n---~i~~i--------~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~  116 (570)
T 2z63_A           52 PELQVLDLSRC---EIQTI--------EDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLE  116 (570)
T ss_dssp             SSCCEEECTTC---CCCEE--------CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCST
T ss_pred             CCceEEECCCC---cCCcc--------CcccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCC
Confidence            34666766666   44432        467789999999999999999986666    8889999999999999998655


Q ss_pred             hhhhcCCCCCcEEeccCCCCCC-CcchhhhCCCCCCcEEEEe-----------cCCCCCC----CEEEccCCCCCcCC
Q 035976          142 LPYLNTLISLTTLILRENNIEG-SRTIEGLSNLRNLQLLDLR-----------LANLTNL----KTLDLRDCGITTIQ  203 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~-~lp~~~~~~l~~L~~L~l~-----------~~~l~~L----~~L~L~~N~l~~ip  203 (203)
                      +..+..+++|++|++++|.+++ .+|. .+.++++|++|+++           +..+++|    +.|++++|.+++++
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~  193 (570)
T 2z63_A          117 NFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (570)
T ss_dssp             TCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred             CccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence            5578999999999999999986 4575 79999999999997           3344455    78999999887653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.46  E-value=7.6e-13  Score=115.70  Aligned_cols=100  Identities=33%  Similarity=0.361  Sum_probs=60.0

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS  171 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~  171 (203)
                      .+..+++|++|+|++|.+.+ ++     .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++ +++  +.
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~--l~  172 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LA  172 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG--GT
T ss_pred             hhccCCCCCEEEecCCCCCC-Cc-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh--hc
Confidence            45555666666666666655 22     455566666666666666643  455666666666666666665 432  56


Q ss_pred             CCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          172 NLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       172 ~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      .+++|+.|+|+         +..+++|+.|+|++|+|++.
T Consensus       173 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence            66666666665         55566666666666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=9.2e-14  Score=118.54  Aligned_cols=102  Identities=19%  Similarity=0.195  Sum_probs=86.0

Q ss_pred             CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhc-CCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976           95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN-TLISLTTLILRENNIEGSRTIEGLSNL  173 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~lp~~~~~~l  173 (203)
                      .+++|++|++++|.+++..|.    .+..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++ ++.  ...+
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~--~~~l  190 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVF  190 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCC
T ss_pred             ccCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc--cccC
Confidence            467889999999999986676    778889999999999999987777775 78999999999999988 653  5568


Q ss_pred             CCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          174 RNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       174 ~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ++|+.|+++          +..+++|+.|+|++|.|+++|
T Consensus       191 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence            999999998          667788999999999998876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=8.4e-13  Score=97.71  Aligned_cols=71  Identities=25%  Similarity=0.284  Sum_probs=57.5

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                      .+..|..+++|++|+|++|.+++ +|..   .+..+++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus        49 ~~~~~~~l~~L~~L~Ls~N~l~~-i~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           49 EPGVFDHLVNLQQLYFNSNKLTA-IPTG---VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CHHHhcCCcCCCEEECCCCCCCc-cChh---HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            46778888999999999999988 4441   46788899999999999986555568888999999999998876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.45  E-value=9.4e-13  Score=115.12  Aligned_cols=119  Identities=34%  Similarity=0.373  Sum_probs=101.7

Q ss_pred             CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976           61 TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS  140 (203)
Q Consensus        61 ~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~  140 (203)
                      ...++.|+|+++   .+.+.         +. +..+++|+.|+|++|.+.+ ++     .+..+++|+.|+|++|.+++ 
T Consensus        64 l~~L~~L~Ls~N---~l~~~---------~~-l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~-  123 (605)
T 1m9s_A           64 LPNVTKLFLNGN---KLTDI---------KP-LTNLKNLGWLFLDENKIKD-LS-----SLKDLKKLKSLSLEHNGISD-  123 (605)
T ss_dssp             CTTCCEEECTTS---CCCCC---------GG-GGGCTTCCEEECCSSCCCC-CT-----TSTTCTTCCEEECTTSCCCC-
T ss_pred             CCCCCEEEeeCC---CCCCC---------hh-hccCCCCCEEECcCCCCCC-Ch-----hhccCCCCCEEEecCCCCCC-
Confidence            346778888777   65543         22 8889999999999999998 44     68899999999999999995 


Q ss_pred             ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          141 ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      + +.+..+++|+.|+|++|++++ ++  .+..+++|+.|+|+         +..+++|+.|+|++|+|+++|
T Consensus       124 l-~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          124 I-NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             C-GGGGGCTTCSEEECCSSCCCC-CG--GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred             C-ccccCCCccCEEECCCCccCC-ch--hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh
Confidence            3 568899999999999999998 64  69999999999998         678899999999999998764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1.4e-13  Score=101.74  Aligned_cols=104  Identities=23%  Similarity=0.182  Sum_probs=88.7

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCC-CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSL-KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      ..+..+++|++|++++|.++. +|.     +..+ ++|++|++++|.+++.  ..+..+++|+.|++++|++++ +|...
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~-----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~   83 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IEN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGL   83 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCH
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHH-----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcch
Confidence            456678899999999999997 553     4444 4999999999999954  678899999999999999998 77645


Q ss_pred             hCCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976          170 LSNLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       170 ~~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +..+++|++|+++            +..+++|+.|++++|.|+.+|
T Consensus        84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~  129 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  129 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence            6899999999998            556789999999999998765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.43  E-value=3.3e-13  Score=108.82  Aligned_cols=103  Identities=26%  Similarity=0.193  Sum_probs=69.1

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhcc-CCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      +..+..+++|++|++++|.+++..+.    .+ ..+++|++|++++|.++.. + ....+++|+.|++++|++++ +|. 
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~-  208 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGP-  208 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECG-
T ss_pred             chhhhccCCCCEEECCCCCCCcccHH----HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chh-
Confidence            33455666777777777777664443    33 3567777777777777633 2 23346777777777777776 665 


Q ss_pred             hhCCCCCCcEEEEe----------cCCCCCCCEEEccCCCCC
Q 035976          169 GLSNLRNLQLLDLR----------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       169 ~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~l~  200 (203)
                      .+..+++|++|+++          +..+++|+.|++++|.++
T Consensus       209 ~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            47777777777776          566677888888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.43  E-value=1.4e-12  Score=105.82  Aligned_cols=99  Identities=28%  Similarity=0.436  Sum_probs=71.6

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                      +..+++|++|++++|.++. ++     .+..+++|++|++++|.+++.  +.+..+++|+.|++++|++++ .+...+..
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~  309 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-IN-----AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN-EDMEVIGG  309 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG-GGHHHHHT
T ss_pred             hhcCCCCCEEECCCCccCC-Ch-----hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC-cChhHhhc
Confidence            6677778888888887776 33     567778888888888887743  456777888888888888876 44346778


Q ss_pred             CCCCcEEEEe---------cCCCCCCCEEEccCCCCC
Q 035976          173 LRNLQLLDLR---------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~  200 (203)
                      +++|++|+++         +..+++|+.|++++|.|+
T Consensus       310 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred             cccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence            8888888887         566777888888888775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.42  E-value=2.6e-13  Score=109.37  Aligned_cols=102  Identities=19%  Similarity=0.195  Sum_probs=82.3

Q ss_pred             CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhh-cCCCCCcEEeccCCCCCCCcchhhhCCC
Q 035976           95 PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYL-NTLISLTTLILRENNIEGSRTIEGLSNL  173 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~lp~~~~~~l  173 (203)
                      .+++|++|++++|.+++..+.    .+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++ ++.  ...+
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~--~~~l  190 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVF  190 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGB----CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCC
T ss_pred             ccCCCCEEECCCCCCCCccch----hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc--cccc
Confidence            367788889999988886565    67778889999999999887666666 468889999999999887 653  4568


Q ss_pred             CCCcEEEEe----------cCCCCCCCEEEccCCCCCcCC
Q 035976          174 RNLQLLDLR----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       174 ~~L~~L~l~----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ++|++|+++          +..+++|+.|+|++|+|+.+|
T Consensus       191 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             ccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh
Confidence            899999887          667788999999999988765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=5.9e-13  Score=115.60  Aligned_cols=82  Identities=24%  Similarity=0.321  Sum_probs=65.3

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCc-chhhhC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSR-TIEGLS  171 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~l-p~~~~~  171 (203)
                      +..+++|++|+|++|.++. +|.    .+..+++|++|+|++|.+++ +| .+..+++|+.|+|++|++++.. |. .+.
T Consensus       459 ~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~  530 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLV  530 (567)
T ss_dssp             GGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGG
T ss_pred             ccccccCcEeecCcccccc-cch----hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH-HHh
Confidence            7888888888888888885 787    78888888888888888885 56 7888888888888888888822 54 677


Q ss_pred             CCCCCcEEEEe
Q 035976          172 NLRNLQLLDLR  182 (203)
Q Consensus       172 ~l~~L~~L~l~  182 (203)
                      .+++|+.|+++
T Consensus       531 ~l~~L~~L~L~  541 (567)
T 1dce_A          531 SCPRLVLLNLQ  541 (567)
T ss_dssp             GCTTCCEEECT
T ss_pred             cCCCCCEEEec
Confidence            77766666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.40  E-value=3.6e-12  Score=107.79  Aligned_cols=100  Identities=30%  Similarity=0.407  Sum_probs=66.1

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                      +..+++|++|++++|.+++ ++     .+..+++|+.|++++|++++..|  +..+++|+.|++++|++++ ++  .+..
T Consensus       283 ~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~  351 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLED-IS-----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLAN  351 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSC-CG-----GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTT
T ss_pred             ccCCCccCeEEcCCCcccC-ch-----hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhcc
Confidence            5556666666666666665 33     24556677777777777765443  5666777777777777776 43  4677


Q ss_pred             CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +++|+.|+++         +..+++|+.|++++|+++++|
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          352 LTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             CTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEECCC
T ss_pred             CCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccCCc
Confidence            7777777776         566677777777777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.39  E-value=1.2e-12  Score=113.59  Aligned_cols=96  Identities=25%  Similarity=0.310  Sum_probs=87.9

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ  177 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~  177 (203)
                      .|+.|++++|.+++ +|     .+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++ +|  .+..+++|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp-----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LC-----HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSS-CC-----CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred             CceEEEecCCCCCC-Cc-----CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence            58899999999998 66     5778999999999999999 789999999999999999999998 87  699999999


Q ss_pred             EEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976          178 LLDLR------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       178 ~L~l~------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +|+++            ++.+++|+.|+|++|+|+++|
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            99998            456789999999999998875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.39  E-value=5.6e-12  Score=106.69  Aligned_cols=97  Identities=24%  Similarity=0.222  Sum_probs=62.2

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                      +..+++|++|++++|.+++ +      .+..+++|++|++++|++++ +|  +..+++|+.|++++|++++ ++   +..
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~-~------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~  146 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTN-L------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSH  146 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC-C------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTT
T ss_pred             cccCCCCCEEECcCCCCce-e------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---ccc
Confidence            5666777777777777766 2      24566777777777777764 33  6667777777777777776 43   455


Q ss_pred             CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +++|++|+++         +..+++|+.|++++|+|+++|
T Consensus       147 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             CTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence            6666666654         445556666666666665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=1.9e-12  Score=105.34  Aligned_cols=86  Identities=19%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             CccCCCCCCCCEEEccC-CcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           90 FSLFHPFEELQSLDLSL-NAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      |. +..+++|++|+|++ |.+++..+.    .|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++ +|..
T Consensus        25 p~-l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~   98 (347)
T 2ifg_A           25 HH-LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWK   98 (347)
T ss_dssp             TT-SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCST
T ss_pred             CC-CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHH
Confidence            44 88888999999996 999985555    78889999999999999998778888999999999999999998 7764


Q ss_pred             hhCCCCCCcEEEEe
Q 035976          169 GLSNLRNLQLLDLR  182 (203)
Q Consensus       169 ~~~~l~~L~~L~l~  182 (203)
                      .|..++ |+.|+|.
T Consensus        99 ~~~~~~-L~~l~l~  111 (347)
T 2ifg_A           99 TVQGLS-LQELVLS  111 (347)
T ss_dssp             TTCSCC-CCEEECC
T ss_pred             HcccCC-ceEEEee
Confidence            444433 5555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.37  E-value=8.9e-12  Score=101.13  Aligned_cols=118  Identities=27%  Similarity=0.335  Sum_probs=77.5

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.++++++   .+.+.         +. +..+++|++|++++|.++. ++     .+..+++|++|++++|.+++ +
T Consensus        66 ~~L~~L~l~~n---~i~~~---------~~-~~~l~~L~~L~L~~n~i~~-~~-----~~~~l~~L~~L~l~~n~i~~-~  125 (347)
T 4fmz_A           66 TNLEYLNLNGN---QITDI---------SP-LSNLVKLTNLYIGTNKITD-IS-----ALQNLTNLRELYLNEDNISD-I  125 (347)
T ss_dssp             TTCCEEECCSS---CCCCC---------GG-GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCSEEECTTSCCCC-C
T ss_pred             CCccEEEccCC---ccccc---------hh-hhcCCcCCEEEccCCcccC-ch-----HHcCCCcCCEEECcCCcccC-c
Confidence            34666666666   44332         12 6777788888888887776 33     56777788888888777774 3


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +. +..+++|+.|++++|.....++  .+..+++|++|+++         +..+++|+.|++++|.++++
T Consensus       126 ~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          126 SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC
T ss_pred             hh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc
Confidence            33 6677777777777775444243  36777777777776         45566677777777766654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.37  E-value=6.1e-12  Score=106.40  Aligned_cols=117  Identities=26%  Similarity=0.360  Sum_probs=84.4

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.|+++++   .+.+.         +. +..+++|++|++++|.+++ ++     .+..+++|++|++++|.+++. 
T Consensus        68 ~~L~~L~Ls~n---~l~~~---------~~-~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~L~~n~l~~~-  127 (466)
T 1o6v_A           68 NNLTQINFSNN---QLTDI---------TP-LKNLTKLVDILMNNNQIAD-IT-----PLANLTNLTGLTLFNNQITDI-  127 (466)
T ss_dssp             TTCCEEECCSS---CCCCC---------GG-GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCCC-
T ss_pred             cCCCEEECCCC---ccCCc---------hh-hhccccCCEEECCCCcccc-Ch-----hhcCCCCCCEEECCCCCCCCC-
Confidence            35666766666   44433         22 7888889999999998887 44     367788899999999888854 


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe--------cCCCCCCCEEEccCCCCCcC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR--------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +. +..+++|+.|++++|.+++ ++  .+..+++|++|+++        +..+++|+.|++++|.++++
T Consensus       128 ~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          128 DP-LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             GG-GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             hH-HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence            33 7888889999999888887 65  36777777777665        55666666666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.33  E-value=2e-11  Score=103.37  Aligned_cols=97  Identities=23%  Similarity=0.150  Sum_probs=42.4

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                      +..+++|++|++++|.+++ ++      +..+++|++|++++|...+.+  .+..+++|+.|++++|++++ +|   +..
T Consensus       123 ~~~l~~L~~L~l~~N~l~~-l~------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~  189 (457)
T 3bz5_A          123 VSQNPLLTYLNCARNTLTE-ID------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQ  189 (457)
T ss_dssp             CTTCTTCCEEECTTSCCSC-CC------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTT
T ss_pred             CCCCCcCCEEECCCCccce-ec------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---ccc
Confidence            4445555555555555554 21      223333333333333222222  23344455555555555554 33   344


Q ss_pred             CCCCcEEEEe--------cCCCCCCCEEEccCCCCCcC
Q 035976          173 LRNLQLLDLR--------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       173 l~~L~~L~l~--------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +++|+.|+++        ++.+++|+.|++++|+|+++
T Consensus       190 l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i  227 (457)
T 3bz5_A          190 NKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI  227 (457)
T ss_dssp             CTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC
T ss_pred             CCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc
Confidence            4444444444        33444444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.33  E-value=5.6e-12  Score=109.45  Aligned_cols=137  Identities=19%  Similarity=0.203  Sum_probs=70.4

Q ss_pred             ccCCCCCCCCCCCCCCC----CCCcc-ccCCCCCCeeEEecCCccccccccC----------------ccccccccCCcc
Q 035976           34 ILTSWVDDDGMSSDCSN----DWDGV-KCNATTRRVMHLLLNDTAKFNFSYN----------------SLFGVSLMNFSL   92 (203)
Q Consensus        34 ~~~~W~~~~~~~~~~c~----~w~gv-~c~~~~~~v~~l~l~~~~~l~l~~~----------------~l~~~~~~~~~~   92 (203)
                      .+.+|...    ..+|.    .|.++ .|..  .+++.|+++++   .+.+.                .+...    +  
T Consensus        32 ~l~~W~~~----~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n---~L~~lp~~l~~~L~~L~Ls~N~l~~i----p--   96 (571)
T 3cvr_A           32 AWDKWEKQ----ALPGENRNEAVSLLKECLI--NQFSELQLNRL---NLSSLPDNLPPQITVLEITQNALISL----P--   96 (571)
T ss_dssp             HHHHHHTT----CCTTCCHHHHHHHHHHHHH--TTCSEEECCSS---CCSCCCSCCCTTCSEEECCSSCCSCC----C--
T ss_pred             HHHHHhcc----CCccccccchhhhcccccc--CCccEEEeCCC---CCCccCHhHcCCCCEEECcCCCCccc----c--
Confidence            35567652    34552    37888 6743  46888888877   44432                11110    1  


Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                       ..+++|++|++++|.+++ +|.     +..  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.    .
T Consensus        97 -~~l~~L~~L~Ls~N~l~~-ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~  158 (571)
T 3cvr_A           97 -ELPASLEYLDACDNRLST-LPE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----L  158 (571)
T ss_dssp             -CCCTTCCEEECCSSCCSC-CCC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----C
T ss_pred             -cccCCCCEEEccCCCCCC-cch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----c
Confidence             223445555555555544 332     111  55555555555553 333   34555666666665555 542    3


Q ss_pred             CCCCcEEEEe---cCCC----CCCCEEEccCCCCCcCC
Q 035976          173 LRNLQLLDLR---LANL----TNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       173 l~~L~~L~l~---~~~l----~~L~~L~L~~N~l~~ip  203 (203)
                      +++|++|+++   +..+    ++|+.|+|++|+|+.+|
T Consensus       159 l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLP  196 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC
T ss_pred             CCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchh
Confidence            4556666665   1111    35666666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=3.1e-12  Score=114.06  Aligned_cols=85  Identities=22%  Similarity=0.296  Sum_probs=74.8

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEG  169 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~  169 (203)
                      +..+..+++|++|+|++|.++. +|.    .+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.|+. +|. .
T Consensus       240 ~~~~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~-~  311 (727)
T 4b8c_D          240 SANIFKYDFLTRLYLNGNSLTE-LPA----EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPW-E  311 (727)
T ss_dssp             CGGGGGCCSCSCCBCTTSCCSC-CCG----GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCS-S
T ss_pred             ChhhcCCCCCCEEEeeCCcCcc-cCh----hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cCh-h
Confidence            3445588999999999999994 887    8889999999999999999 778889999999999999999986 886 6


Q ss_pred             hCCCCCCcEEEEe
Q 035976          170 LSNLRNLQLLDLR  182 (203)
Q Consensus       170 ~~~l~~L~~L~l~  182 (203)
                      |..+++|++|+|+
T Consensus       312 ~~~l~~L~~L~L~  324 (727)
T 4b8c_D          312 FGNLCNLQFLGVE  324 (727)
T ss_dssp             TTSCTTCCCEECT
T ss_pred             hhcCCCccEEeCC
Confidence            9999999999997

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=1.5e-14  Score=109.01  Aligned_cols=83  Identities=24%  Similarity=0.292  Sum_probs=37.7

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhh
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGL  170 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~  170 (203)
                      .+..+++|++|++++|.++. +|.    .+..+++|++|++++|++++ +| .+..+++|+.|++++|++++ ++. ..+
T Consensus        65 ~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l  136 (198)
T 1ds9_A           65 SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKL  136 (198)
T ss_dssp             CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHH
T ss_pred             ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHH
Confidence            34444455555555555443 343    33334445555555555542 22 34444455555555555544 321 234


Q ss_pred             CCCCCCcEEEEe
Q 035976          171 SNLRNLQLLDLR  182 (203)
Q Consensus       171 ~~l~~L~~L~l~  182 (203)
                      ..+++|++|+++
T Consensus       137 ~~l~~L~~L~l~  148 (198)
T 1ds9_A          137 AALDKLEDLLLA  148 (198)
T ss_dssp             TTTTTCSEEEEC
T ss_pred             hcCCCCCEEEec
Confidence            444444444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.30  E-value=2.8e-11  Score=102.38  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                      .+..+++|++|++++|.+++ +|.    .   .++|++|++++|++++ +| .+..+++|+.|++++|++++
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~-lp~----~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKK-LPD----L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSC-CCC----C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             ccCCCCCCCEEECCCCcCcc-cCC----C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            47777778888888887776 554    2   2366666666666664 34 35556666666666555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.24  E-value=4.4e-12  Score=111.14  Aligned_cols=70  Identities=20%  Similarity=0.151  Sum_probs=41.4

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN  175 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~  175 (203)
                      +++|++|++++|.++. +|.       .+++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|. .   +++
T Consensus        80 l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~-~---l~~  142 (622)
T 3g06_A           80 PPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV-L---PPG  142 (622)
T ss_dssp             CTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC-C---CTT
T ss_pred             CCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC-C---CCC
Confidence            4566666666666655 442       35566666666666663 333   44566666666666665 553 2   366


Q ss_pred             CcEEEEe
Q 035976          176 LQLLDLR  182 (203)
Q Consensus       176 L~~L~l~  182 (203)
                      |++|+++
T Consensus       143 L~~L~Ls  149 (622)
T 3g06_A          143 LQELSVS  149 (622)
T ss_dssp             CCEEECC
T ss_pred             CCEEECc
Confidence            7777766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.24  E-value=5e-12  Score=102.10  Aligned_cols=85  Identities=24%  Similarity=0.171  Sum_probs=45.6

Q ss_pred             CCCCCCCCEEEccCCcCCCc-ccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCC-CCCCC-cchhh
Q 035976           93 FHPFEELQSLDLSLNAFEGF-YENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILREN-NIEGS-RTIEG  169 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-lp~~~  169 (203)
                      +..+++|++|++++|.+++. ++.    .+..+++|++|++++|.+++..|..+..+++|+.|++++| .+++. ++. .
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~  163 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-L  163 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-H
T ss_pred             hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-H
Confidence            34456666666666665543 443    4555566666666666555545555555555666666555 44431 332 3


Q ss_pred             hCCCCCCcEEEEe
Q 035976          170 LSNLRNLQLLDLR  182 (203)
Q Consensus       170 ~~~l~~L~~L~l~  182 (203)
                      +..+++|++|+++
T Consensus       164 ~~~~~~L~~L~l~  176 (336)
T 2ast_B          164 LSSCSRLDELNLS  176 (336)
T ss_dssp             HHHCTTCCEEECC
T ss_pred             HhcCCCCCEEcCC
Confidence            4455555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.22  E-value=9.6e-13  Score=106.31  Aligned_cols=132  Identities=17%  Similarity=0.200  Sum_probs=107.7

Q ss_pred             CCCCCCCccccCCCCCCeeEEecCCccccccccCccccccccCCccCCCC--CCCCEEEccCCcCCCcccchhhhccCCC
Q 035976           47 DCSNDWDGVKCNATTRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPF--EELQSLDLSLNAFEGFYENRAYDSNGSL  124 (203)
Q Consensus        47 ~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~~l~~l  124 (203)
                      -|. .|.++.|+.  ..++.++++++   .+..           ..+..+  +.++.|++++|.+.+..+     .+..+
T Consensus        35 vc~-~W~~~~~~~--~~~~~l~l~~~---~~~~-----------~~~~~~~~~~l~~L~l~~n~l~~~~~-----~~~~~   92 (336)
T 2ast_B           35 VCK-RWYRLASDE--SLWQTLDLTGK---NLHP-----------DVTGRLLSQGVIAFRCPRSFMDQPLA-----EHFSP   92 (336)
T ss_dssp             SCH-HHHHHHTCS--TTSSEEECTTC---BCCH-----------HHHHHHHHTTCSEEECTTCEECSCCC-----SCCCC
T ss_pred             HHH-HHHHHhcCc--hhheeeccccc---cCCH-----------HHHHhhhhccceEEEcCCccccccch-----hhccC
Confidence            344 899998853  45778888877   4432           234445  789999999999999544     56679


Q ss_pred             CCCCEEEccCCCCCCC-ChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCCCCCCC
Q 035976          125 KQLKILNLEANHFNDS-ILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LANLTNLK  190 (203)
Q Consensus       125 ~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~l~~L~  190 (203)
                      ++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+. .+..+++|++|+++             +..+++|+
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            9999999999999865 778889999999999999999875664 78999999999997             45688999


Q ss_pred             EEEccCC-CCCc
Q 035976          191 TLDLRDC-GITT  201 (203)
Q Consensus       191 ~L~L~~N-~l~~  201 (203)
                      +|++++| .+++
T Consensus       172 ~L~l~~~~~l~~  183 (336)
T 2ast_B          172 ELNLSWCFDFTE  183 (336)
T ss_dssp             EEECCCCTTCCH
T ss_pred             EEcCCCCCCcCh
Confidence            9999999 8864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.22  E-value=1.2e-10  Score=101.04  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=88.4

Q ss_pred             CeeEEecCCc------------cccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEE
Q 035976           63 RVMHLLLNDT------------AKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKIL  130 (203)
Q Consensus        63 ~v~~l~l~~~------------~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L  130 (203)
                      .++.|+++++            +.|++++|.+.+.    +. +.+  +|++|++++|.+++ +|     .  .+++|++|
T Consensus        81 ~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~i----p~-l~~--~L~~L~Ls~N~l~~-lp-----~--~l~~L~~L  145 (571)
T 3cvr_A           81 QITVLEITQNALISLPELPASLEYLDACDNRLSTL----PE-LPA--SLKHLDVDNNQLTM-LP-----E--LPALLEYI  145 (571)
T ss_dssp             TCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC----CC-CCT--TCCEEECCSSCCSC-CC-----C--CCTTCCEE
T ss_pred             CCCEEECcCCCCcccccccCCCCEEEccCCCCCCc----ch-hhc--CCCEEECCCCcCCC-CC-----C--cCccccEE
Confidence            4556666554            3344555555443    22 444  89999999999999 66     3  57899999


Q ss_pred             EccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---cCCCC----CC-------CEEEccC
Q 035976          131 NLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---LANLT----NL-------KTLDLRD  196 (203)
Q Consensus       131 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---~~~l~----~L-------~~L~L~~  196 (203)
                      ++++|.+++ +|.   .+++|+.|++++|++++ +|.  +.  ++|++|+++   +..++    +|       +.|+|++
T Consensus       146 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          146 NADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE  216 (571)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCS
T ss_pred             eCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCC
Confidence            999999996 665   67899999999999998 885  55  899999998   33322    57       9999999


Q ss_pred             CCCCcCC
Q 035976          197 CGITTIQ  203 (203)
Q Consensus       197 N~l~~ip  203 (203)
                      |+|+.||
T Consensus       217 N~l~~lp  223 (571)
T 3cvr_A          217 NRITHIP  223 (571)
T ss_dssp             SCCCCCC
T ss_pred             CcceecC
Confidence            9999887

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=5.1e-11  Score=96.81  Aligned_cols=94  Identities=19%  Similarity=0.216  Sum_probs=80.5

Q ss_pred             CEEEccCC-cCCCcccchhhhccCCCCCCCEEEccC-CCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976          100 QSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEA-NHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ  177 (203)
Q Consensus       100 ~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~  177 (203)
                      ..++++++ .++. +|     .+..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++ +++..|..+++|+
T Consensus        11 ~~v~~~~~n~l~~-ip-----~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LH-----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTT-TT-----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCC
T ss_pred             CEEEcCCCCCCCc-cC-----CCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCC
Confidence            35688888 8887 77     467789999999996 99997777889999999999999999999 6666899999999


Q ss_pred             EEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          178 LLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       178 ~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      +|+|+           +..++ |+.|+|++|.|..
T Consensus        84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            99998           33343 9999999999863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.21  E-value=1.4e-10  Score=97.99  Aligned_cols=94  Identities=20%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNL  176 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L  176 (203)
                      ++|++|++++|.+++ +|     .+..+++|++|++++|++++ +|..   ..+|+.|++++|++++ +|  .+..+++|
T Consensus       131 ~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFL  197 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred             CCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCC
Confidence            577778888777776 55     46777888888888888774 4543   2478888888888877 66  47888888


Q ss_pred             cEEEEe---cC----CCCCCCEEEccCCCCCcCC
Q 035976          177 QLLDLR---LA----NLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       177 ~~L~l~---~~----~l~~L~~L~L~~N~l~~ip  203 (203)
                      ++|+++   +.    ..++|+.|++++|+++.+|
T Consensus       198 ~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp  231 (454)
T 1jl5_A          198 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELP  231 (454)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC
T ss_pred             CEEECCCCcCCcCCCCcCcccEEECcCCcCCccc
Confidence            888887   22    2346888888888887765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.20  E-value=3.9e-12  Score=104.30  Aligned_cols=104  Identities=24%  Similarity=0.278  Sum_probs=57.9

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCC-CCCCEEEccCCCCCCCChhhh----cC-CCCCcEEeccCCCCCCC----cc
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSL-KQLKILNLEANHFNDSILPYL----NT-LISLTTLILRENNIEGS----RT  166 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~L~~N~l~~~----lp  166 (203)
                      ++|++|++++|.+++..+......+..+ ++|++|++++|.+++..+..+    .. .++|+.|++++|.++..    ++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            5666777777666653332111123333 567777777777665544433    23 24677777777776631    22


Q ss_pred             hhhhCCCC-CCcEEEEe---------------cCCC-CCCCEEEccCCCCCc
Q 035976          167 IEGLSNLR-NLQLLDLR---------------LANL-TNLKTLDLRDCGITT  201 (203)
Q Consensus       167 ~~~~~~l~-~L~~L~l~---------------~~~l-~~L~~L~L~~N~l~~  201 (203)
                      . .+..++ +|++|+++               +..+ ++|+.|+|++|.|+.
T Consensus       160 ~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          160 Q-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             H-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             H-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            1 234444 77777776               2223 477777777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.15  E-value=7.3e-12  Score=103.35  Aligned_cols=106  Identities=19%  Similarity=0.257  Sum_probs=73.5

Q ss_pred             cCCCCCCCCEEEccCCcCCC-----cccchhhhccCCCCCCCEEEccCCCCC----CCChhhhcCCCCCcEEeccCCCCC
Q 035976           92 LFHPFEELQSLDLSLNAFEG-----FYENRAYDSNGSLKQLKILNLEANHFN----DSILPYLNTLISLTTLILRENNIE  162 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~-----~~p~~~~~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~  162 (203)
                      .+..+++|++|++++|.++.     .++.    .+..+++|++|++++|.++    ..+|..+..+++|+.|+|++|.++
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence            34456778888888887762     2332    5566778888888888875    456677777888888888888877


Q ss_pred             CC----cchhhh--CCCCCCcEEEEe---------------c-CCCCCCCEEEccCCCCCcC
Q 035976          163 GS----RTIEGL--SNLRNLQLLDLR---------------L-ANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       163 ~~----lp~~~~--~~l~~L~~L~l~---------------~-~~l~~L~~L~L~~N~l~~i  202 (203)
                      +.    ++. .+  +.+++|++|+++               + ..+++|+.|+|++|+|++.
T Consensus       258 ~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          258 ARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            52    232 44  347888888887               2 4467888888888887653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.11  E-value=1.7e-11  Score=101.19  Aligned_cols=103  Identities=27%  Similarity=0.274  Sum_probs=60.3

Q ss_pred             CCCCCCCEEEccCCcCCC----cccchhhhccCCCCCCCEEEccCCCCCCCChhhhc----CC---------CCCcEEec
Q 035976           94 HPFEELQSLDLSLNAFEG----FYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN----TL---------ISLTTLIL  156 (203)
Q Consensus        94 ~~l~~L~~L~L~~N~l~~----~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L  156 (203)
                      ..+++|++|+|++|.++.    .++.    .+..+++|++|++++|.++...+..+.    .+         ++|+.|++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLID----FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHH----HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHH----HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence            456666666666666665    2443    555566666666666666533222222    22         66777777


Q ss_pred             cCCCCC-CCcch--hhhCCCCCCcEEEEe----------------cCCCCCCCEEEccCCCCC
Q 035976          157 RENNIE-GSRTI--EGLSNLRNLQLLDLR----------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       157 ~~N~l~-~~lp~--~~~~~l~~L~~L~l~----------------~~~l~~L~~L~L~~N~l~  200 (203)
                      ++|+++ ..++.  ..+..+++|++|+++                +..+++|+.|+|++|.|+
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence            777765 22331  145566677777776                235567777777777763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.10  E-value=1.5e-12  Score=97.98  Aligned_cols=100  Identities=27%  Similarity=0.324  Sum_probs=89.1

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS  171 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~  171 (203)
                      .+..+++|++|++++|.+++ +|     .+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +|  .+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-----~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~  112 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE  112 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-----CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-----ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccc
Confidence            67889999999999999998 65     5677899999999999999 678878888999999999999998 76  588


Q ss_pred             CCCCCcEEEEe------------cCCCCCCCEEEccCCCCCc
Q 035976          172 NLRNLQLLDLR------------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       172 ~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~  201 (203)
                      .+++|++|+++            +..+++|++|++++|.+++
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            89999999998            6788999999999998754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.10  E-value=2.9e-11  Score=99.12  Aligned_cols=129  Identities=24%  Similarity=0.267  Sum_probs=95.9

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCC-CCCEEEccCCcCCCcccchhhhccCCC-----CCCCEEEccCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFE-ELQSLDLSLNAFEGFYENRAYDSNGSL-----KQLKILNLEAN  135 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~l~~l-----~~L~~L~L~~n  135 (203)
                      ..++.|+++++   .+.+......    ...+..++ +|++|++++|.+++..+.    .+..+     ++|++|++++|
T Consensus        22 ~~L~~L~Ls~n---~l~~~~~~~l----~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           22 HGVTSLDLSLN---NLYSISTVEL----IQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             TTCCEEECTTS---CGGGSCHHHH----HHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSS
T ss_pred             CCceEEEccCC---CCChHHHHHH----HHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEECcCC
Confidence            45889999888   6665411000    15667788 899999999999886554    44443     89999999999


Q ss_pred             CCCCCChhhh----cCC-CCCcEEeccCCCCCCCcchhh----hCC-CCCCcEEEEe---------------cCCCC-CC
Q 035976          136 HFNDSILPYL----NTL-ISLTTLILRENNIEGSRTIEG----LSN-LRNLQLLDLR---------------LANLT-NL  189 (203)
Q Consensus       136 ~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~lp~~~----~~~-l~~L~~L~l~---------------~~~l~-~L  189 (203)
                      .+++..+..+    ..+ ++|+.|++++|++++ .+...    +.. ..+|++|+++               +..++ +|
T Consensus        91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence            9997776644    444 899999999999987 44333    334 3699999998               23444 89


Q ss_pred             CEEEccCCCCCcC
Q 035976          190 KTLDLRDCGITTI  202 (203)
Q Consensus       190 ~~L~L~~N~l~~i  202 (203)
                      ++|+|++|+|++.
T Consensus       170 ~~L~Ls~n~l~~~  182 (362)
T 3goz_A          170 NSLNLRGNNLASK  182 (362)
T ss_dssp             CEEECTTSCGGGS
T ss_pred             cEeeecCCCCchh
Confidence            9999999999764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=1.3e-09  Score=95.63  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=37.4

Q ss_pred             CCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCCCEEEc
Q 035976          125 KQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNLKTLDL  194 (203)
Q Consensus       125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L~~L~L  194 (203)
                      ++|++|++++|.+++ +|   ..+++|+.|++++|+++. +|.    .+++|+.|+++          +..+++|+.|+|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence            445555555555553 33   234555566666665554 542    34556666665          455566666666


Q ss_pred             cCCCCCc
Q 035976          195 RDCGITT  201 (203)
Q Consensus       195 ~~N~l~~  201 (203)
                      ++|.|++
T Consensus       292 ~~N~l~~  298 (622)
T 3g06_A          292 EGNPLSE  298 (622)
T ss_dssp             CSCCCCH
T ss_pred             cCCCCCC
Confidence            6666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.05  E-value=4.5e-10  Score=91.60  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=80.8

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChh-hhcCCCCCcE-EeccCCCCCCCcchhhhCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILP-YLNTLISLTT-LILRENNIEGSRTIEGLSNLR  174 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~-L~L~~N~l~~~lp~~~~~~l~  174 (203)
                      +++++|+|++|+++. +|..   .|.++++|++|+|++|++.+.+|. .|..++++.. +.+..|+++. +++..|..++
T Consensus        30 ~~l~~L~Ls~N~i~~-i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEESCCCSE-ECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEEccCCcCCC-cCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            589999999999998 5541   688999999999999998766654 5788888765 6677899998 7766899999


Q ss_pred             CCcEEEEe-----------cCCCCCCCEEEccC-CCCCcCC
Q 035976          175 NLQLLDLR-----------LANLTNLKTLDLRD-CGITTIQ  203 (203)
Q Consensus       175 ~L~~L~l~-----------~~~l~~L~~L~L~~-N~l~~ip  203 (203)
                      +|++|+++           +....++..|++.+ |++..+|
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~  145 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  145 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence            99999998           33444667888865 5666553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=8.3e-09  Score=83.31  Aligned_cols=78  Identities=19%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             CCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc-EEEEe----------cCCCCCCCEE
Q 035976          124 LKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ-LLDLR----------LANLTNLKTL  192 (203)
Q Consensus       124 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~-~L~l~----------~~~l~~L~~L  192 (203)
                      +++|+.++++.|.++...+..|..+.+|+.+++.+| ++. ++...|..+.+|+ .+++.          |..+++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEE
Confidence            678999999999998555567899999999999998 776 8888899999999 99986          8899999999


Q ss_pred             EccCCCCCcCC
Q 035976          193 DLRDCGITTIQ  203 (203)
Q Consensus       193 ~L~~N~l~~ip  203 (203)
                      +++.|+++.|+
T Consensus       303 ~l~~n~i~~I~  313 (329)
T 3sb4_A          303 LATGDKITTLG  313 (329)
T ss_dssp             EECSSCCCEEC
T ss_pred             EeCCCccCccc
Confidence            99999988764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.92  E-value=6.5e-11  Score=99.43  Aligned_cols=75  Identities=24%  Similarity=0.218  Sum_probs=36.8

Q ss_pred             CCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCCcchhhhC-----CCCCCcEEEEe-------------
Q 035976          125 KQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGSRTIEGLS-----NLRNLQLLDLR-------------  182 (203)
Q Consensus       125 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~-----~l~~L~~L~l~-------------  182 (203)
                      ++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+. .+.     ..++|++|+++             
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            3455555555555432    233344455566666666655541111 121     14556666655             


Q ss_pred             --cCCCCCCCEEEccCCCCC
Q 035976          183 --LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       183 --~~~l~~L~~L~L~~N~l~  200 (203)
                        +..+++|++|++++|+|+
T Consensus       392 ~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHhCCCccEEECCCCCCC
Confidence              233556666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.90  E-value=2.2e-10  Score=96.13  Aligned_cols=102  Identities=23%  Similarity=0.218  Sum_probs=69.6

Q ss_pred             CCCCCCCEEEccCCcCCCc----ccchhhhccCCCCCCCEEEccCCCCCCCChhhhc-----CCCCCcEEeccCCCCCCC
Q 035976           94 HPFEELQSLDLSLNAFEGF----YENRAYDSNGSLKQLKILNLEANHFNDSILPYLN-----TLISLTTLILRENNIEGS  164 (203)
Q Consensus        94 ~~l~~L~~L~L~~N~l~~~----~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~  164 (203)
                      ..+++|++|++++|.++..    ++.    .+..+++|++|++++|.+++..+..+.     ..++|+.|++++|.+++.
T Consensus       253 ~~~~~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          253 HPSSRLRTLWIWECGITAKGCGDLCR----VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHH----HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             cCCCCceEEECcCCCCCHHHHHHHHH----HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence            3567777777777777653    333    455677788888888877643333332     235788888888887752


Q ss_pred             ----cchhhhCCCCCCcEEEEe---------------cC-CCCCCCEEEccCCCCC
Q 035976          165 ----RTIEGLSNLRNLQLLDLR---------------LA-NLTNLKTLDLRDCGIT  200 (203)
Q Consensus       165 ----lp~~~~~~l~~L~~L~l~---------------~~-~l~~L~~L~L~~N~l~  200 (203)
                          ++. .+..+++|++|+++               +. ..++|+.|+|++|+|+
T Consensus       329 ~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          329 CCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             GHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence                232 56677889999887               11 2678999999999887

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.84  E-value=2.5e-10  Score=94.13  Aligned_cols=129  Identities=20%  Similarity=0.178  Sum_probs=86.8

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhcc-CCCCCCCEEEccCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSN-GSLKQLKILNLEANHFNDS  140 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~l~~L~~L~L~~n~l~~~  140 (203)
                      ..++.++|+++   .+....+       ......+++|++|+|++|.++..........+ ...++|++|+|++|.++..
T Consensus       101 ~~L~~L~Ls~n---~l~~~~~-------~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~  170 (372)
T 3un9_A          101 HALDEVNLASC---QLDPAGL-------RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA  170 (372)
T ss_dssp             SCEEEEECTTC---CCCHHHH-------HHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred             CCceEEEecCC---CCCHHHH-------HHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence            35777777777   5543211       11122345788999999988763322101122 3567899999999998642


Q ss_pred             ----ChhhhcCCCCCcEEeccCCCCCCC----cchhhhCCCCCCcEEEEe---------------cCCCCCCCEEEccCC
Q 035976          141 ----ILPYLNTLISLTTLILRENNIEGS----RTIEGLSNLRNLQLLDLR---------------LANLTNLKTLDLRDC  197 (203)
Q Consensus       141 ----~p~~~~~l~~L~~L~L~~N~l~~~----lp~~~~~~l~~L~~L~l~---------------~~~l~~L~~L~L~~N  197 (203)
                          ++..+...++|++|+|++|.++..    ++ ..+...++|+.|+|+               +...++|++|+|++|
T Consensus       171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~-~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA-AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH-HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH-HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence                334557788999999999998751    22 246677899999998               334578999999999


Q ss_pred             CCCc
Q 035976          198 GITT  201 (203)
Q Consensus       198 ~l~~  201 (203)
                      .|+.
T Consensus       250 ~i~~  253 (372)
T 3un9_A          250 ELSS  253 (372)
T ss_dssp             SCCH
T ss_pred             CCCH
Confidence            9864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.66  E-value=1.3e-09  Score=89.87  Aligned_cols=129  Identities=17%  Similarity=0.131  Sum_probs=89.7

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCC-CCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFH-PFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS  140 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~  140 (203)
                      ..+..++++++   .++.......    ...+. ..++|++|+|++|.++......   -...+++|+.|+|++|.++..
T Consensus        72 ~~L~~L~Ls~n---~l~~~~~~~l----~~~L~~~~~~L~~L~Ls~n~l~~~~~~~---l~~~L~~L~~L~Ls~n~l~~~  141 (372)
T 3un9_A           72 SSLRQLNLAGV---RMTPVKCTVV----AAVLGSGRHALDEVNLASCQLDPAGLRT---LLPVFLRARKLGLQLNSLGPE  141 (372)
T ss_dssp             TTCCEEECTTS---CCCHHHHHHH----HHHHSSCSSCEEEEECTTCCCCHHHHHH---THHHHHTEEEEECCSSCCCHH
T ss_pred             hhCCEEEecCC---CCCHHHHHHH----HHHHhhCCCCceEEEecCCCCCHHHHHH---HHHHHHhccHhhcCCCCCCHH
Confidence            35778888887   6544311111    11122 3368999999999987632221   122356899999999999854


Q ss_pred             Chhhh-----cCCCCCcEEeccCCCCCC----CcchhhhCCCCCCcEEEEe---------------cCCCCCCCEEEccC
Q 035976          141 ILPYL-----NTLISLTTLILRENNIEG----SRTIEGLSNLRNLQLLDLR---------------LANLTNLKTLDLRD  196 (203)
Q Consensus       141 ~p~~~-----~~l~~L~~L~L~~N~l~~----~lp~~~~~~l~~L~~L~l~---------------~~~l~~L~~L~L~~  196 (203)
                      ....+     ...+.|+.|+|++|.++.    .++. .+...++|++|+|+               +...++|+.|+|++
T Consensus       142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence            43433     356889999999999975    1222 45778999999998               46678999999999


Q ss_pred             CCCCc
Q 035976          197 CGITT  201 (203)
Q Consensus       197 N~l~~  201 (203)
                      |.|+.
T Consensus       221 N~i~~  225 (372)
T 3un9_A          221 NGAGD  225 (372)
T ss_dssp             SCCCH
T ss_pred             CCCCH
Confidence            99874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.64  E-value=2.5e-08  Score=78.53  Aligned_cols=80  Identities=28%  Similarity=0.237  Sum_probs=56.4

Q ss_pred             CCCCCCEEEccCCcCCC--cccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCC--CCcEEeccCCCCCCCcch---
Q 035976           95 PFEELQSLDLSLNAFEG--FYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLI--SLTTLILRENNIEGSRTI---  167 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~lp~---  167 (203)
                      .+++|++|+|++|.+++  .+|.    .+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|.+.+.+|.   
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchh
Confidence            47788888888888887  2333    455788888888888888853  2333333  888888888888765541   


Q ss_pred             ---hhhCCCCCCcEEE
Q 035976          168 ---EGLSNLRNLQLLD  180 (203)
Q Consensus       168 ---~~~~~l~~L~~L~  180 (203)
                         ..+..+++|+.||
T Consensus       242 y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          242 YISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHCTTCCEES
T ss_pred             HHHHHHHHCcccCeEC
Confidence               1356677777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=1.8e-08  Score=74.94  Aligned_cols=107  Identities=18%  Similarity=0.124  Sum_probs=59.6

Q ss_pred             CCCCCCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCC---
Q 035976           93 FHPFEELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGS---  164 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---  164 (203)
                      +...+.|++|+|++| .+...-.......+...++|++|+|++|.+...    +...+...+.|+.|+|++|.++..   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344566666666666 655321111111345556666666666666532    222334445666666666666541   


Q ss_pred             -cchhhhCCCCCCcEEEE--e---------------cCCCCCCCEEEccCCCCC
Q 035976          165 -RTIEGLSNLRNLQLLDL--R---------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       165 -lp~~~~~~l~~L~~L~l--~---------------~~~l~~L~~L~L~~N~l~  200 (203)
                       +. ..+...++|++|++  +               +...++|+.|+|++|.|.
T Consensus       112 ~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             12 13445556666666  3               445578889999888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=2.2e-07  Score=74.85  Aligned_cols=84  Identities=17%  Similarity=0.055  Sum_probs=45.9

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCC-EEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           90 FSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLK-ILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      ...|.++++|+.+++.+| ++. ++..   .|.++++|+ .+++.. .++...+..|..+++|+.+++..|.++. ++..
T Consensus       243 ~~aF~~~~~L~~l~l~~n-i~~-I~~~---aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~  315 (329)
T 3sb4_A          243 DFTFAQKKYLLKIKLPHN-LKT-IGQR---VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDE  315 (329)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCE-ECTT---TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTT
T ss_pred             HhhhhCCCCCCEEECCcc-cce-ehHH---HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-cchh
Confidence            445556666666666555 444 3321   455555665 666655 4443334555566666666666666555 5544


Q ss_pred             hhCCCCCCcEEE
Q 035976          169 GLSNLRNLQLLD  180 (203)
Q Consensus       169 ~~~~l~~L~~L~  180 (203)
                      .|.++++|+.++
T Consensus       316 aF~~~~~L~~ly  327 (329)
T 3sb4_A          316 LFGNGVPSKLIY  327 (329)
T ss_dssp             TTCTTCCCCEEE
T ss_pred             hhcCCcchhhhc
Confidence            555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.54  E-value=3.8e-09  Score=83.16  Aligned_cols=58  Identities=22%  Similarity=0.312  Sum_probs=43.6

Q ss_pred             CCCCCCCEEEccCCCCCC--CChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCC--CCcEEEEe
Q 035976          122 GSLKQLKILNLEANHFND--SILPYLNTLISLTTLILRENNIEGSRTIEGLSNLR--NLQLLDLR  182 (203)
Q Consensus       122 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~--~L~~L~l~  182 (203)
                      ..+++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++ +.  .+..+.  +|++|+|+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~l~L~~L~L~  228 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER--ELDKIKGLKLEELWLD  228 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG--GGGGGTTSCCSEEECT
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch--hhhhcccCCcceEEcc
Confidence            468899999999999997  345667789999999999999998 53  233333  44444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.51  E-value=1.4e-08  Score=87.80  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=56.3

Q ss_pred             CCCCCCEEEccCCcCCCc----ccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCCcc
Q 035976           95 PFEELQSLDLSLNAFEGF----YENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGSRT  166 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~~~----~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~lp  166 (203)
                      .+++|++|++++|.+++.    ++.    .+..+++|++|+++.|.+++.    ++..+..+++|+.|++++|.+.+ ++
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~  236 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV  236 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH
T ss_pred             hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH
Confidence            578888888888887654    222    334578888888888888632    33445677888888888887776 66


Q ss_pred             hhhhCCCCCCcEEEE
Q 035976          167 IEGLSNLRNLQLLDL  181 (203)
Q Consensus       167 ~~~~~~l~~L~~L~l  181 (203)
                      . .+..+++|+.|++
T Consensus       237 ~-~~~~~~~L~~L~l  250 (592)
T 3ogk_B          237 G-FFKAAANLEEFCG  250 (592)
T ss_dssp             H-HHHHCTTCCEEEE
T ss_pred             H-HHhhhhHHHhhcc
Confidence            3 5666666666666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.35  E-value=5.4e-07  Score=77.76  Aligned_cols=73  Identities=18%  Similarity=0.102  Sum_probs=48.8

Q ss_pred             CCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCC
Q 035976          122 GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLK  190 (203)
Q Consensus       122 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~  190 (203)
                      ..+++|+.++++.+.. ..+|..+..+++|+.|++++|.+++......+..+++|++|+++           ...+++|+
T Consensus       267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred             hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence            3444455555544322 24566677788899999998887652222246788899998886           35677888


Q ss_pred             EEEcc
Q 035976          191 TLDLR  195 (203)
Q Consensus       191 ~L~L~  195 (203)
                      .|+|+
T Consensus       346 ~L~L~  350 (592)
T 3ogk_B          346 RLRIE  350 (592)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            88888

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.16  E-value=9.7e-06  Score=67.32  Aligned_cols=80  Identities=14%  Similarity=0.061  Sum_probs=58.1

Q ss_pred             ccCCCCCCCEEEccCCCCC-----CCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cC
Q 035976          120 SNGSLKQLKILNLEANHFN-----DSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LA  184 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~  184 (203)
                      .|..+++|+.+.+..|.+.     ...+..|..+++|+.+.+. +.++. ++...|..+.+|+.+.+.          |.
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~  343 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGLLGGNRKVTQLTIPANVTQINFSAFN  343 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTTTTTCCSCCEEEECTTCCEECTTSSS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-EhhhhhcCCCCccEEEECccccEEcHHhCC
Confidence            5667778888888776654     2334567778888888887 44665 666678888888888875          77


Q ss_pred             CCCCCCEEEccCCCCCcC
Q 035976          185 NLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       185 ~l~~L~~L~L~~N~l~~i  202 (203)
                      .+ +|+.+++.+|.+..+
T Consensus       344 ~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          344 NT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             SS-CCCEEEECCSSCCBC
T ss_pred             CC-CCCEEEEcCCCCccc
Confidence            77 888888888876554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.10  E-value=6e-07  Score=77.41  Aligned_cols=76  Identities=21%  Similarity=0.345  Sum_probs=38.8

Q ss_pred             CCCCCCEEEccCCCCCCCChhhhcC-CCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe------------cCCCCCC
Q 035976          123 SLKQLKILNLEANHFNDSILPYLNT-LISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR------------LANLTNL  189 (203)
Q Consensus       123 ~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~------------~~~l~~L  189 (203)
                      .+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++.........+++|++|+++            ...+++|
T Consensus       430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM  508 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred             hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence            344555555543 333333333333 55666666666666542221112446666666665            2345666


Q ss_pred             CEEEccCCCC
Q 035976          190 KTLDLRDCGI  199 (203)
Q Consensus       190 ~~L~L~~N~l  199 (203)
                      +.|++++|++
T Consensus       509 ~~L~l~~~~~  518 (594)
T 2p1m_B          509 RSLWMSSCSV  518 (594)
T ss_dssp             SEEEEESSCC
T ss_pred             CEEeeeCCCC
Confidence            7777766665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.05  E-value=2.6e-05  Score=64.77  Aligned_cols=102  Identities=13%  Similarity=0.097  Sum_probs=58.5

Q ss_pred             cCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch
Q 035976           88 MNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI  167 (203)
Q Consensus        88 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~  167 (203)
                      +....|.++++|+.+++..|.++. ++..   .|. ..+|+.+.+..+ ++..-...|..+++|+.+++..| ++. ++.
T Consensus       171 I~~~aF~~c~~L~~l~l~~n~l~~-I~~~---aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~~  242 (401)
T 4fdw_A          171 LKEDIFYYCYNLKKADLSKTKITK-LPAS---TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-IGQ  242 (401)
T ss_dssp             ECSSTTTTCTTCCEEECTTSCCSE-ECTT---TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-ECT
T ss_pred             ehHHHhhCcccCCeeecCCCcceE-echh---hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-ccc
Confidence            345678888888888888888776 5542   333 466777777633 44333455666667777776653 332 333


Q ss_pred             hhhCCCCCCcEEEEe----------cCCCCCCCEEEccCCC
Q 035976          168 EGLSNLRNLQLLDLR----------LANLTNLKTLDLRDCG  198 (203)
Q Consensus       168 ~~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~  198 (203)
                      ..|.. .+|+.+.+.          |..+++|+.+++.+|.
T Consensus       243 ~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          243 EAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             TTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             ccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence            34444 344444443          4444555555544443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.98  E-value=6.4e-06  Score=60.64  Aligned_cols=63  Identities=14%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             CCCCCCCCEEEccCCc-CCCcccchhhhccCCC----CCCCEEEccCCC-CCCCChhhhcCCCCCcEEeccCC
Q 035976           93 FHPFEELQSLDLSLNA-FEGFYENRAYDSNGSL----KQLKILNLEANH-FNDSILPYLNTLISLTTLILREN  159 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N  159 (203)
                      +.++++|++|+|+++. ++..    +...+..+    ++|++|+++++. +++.--..+..+++|+.|++++.
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             hcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            3455566666666553 4431    11133332    245666665543 54333334455555666666555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.96  E-value=1.3e-06  Score=75.28  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             CCCCCCEEEccCCcCCCcccchhhhccC-CCCCCCEEEccCC-CCCCC-ChhhhcCCCCCcEEeccCCCCCC
Q 035976           95 PFEELQSLDLSLNAFEGFYENRAYDSNG-SLKQLKILNLEAN-HFNDS-ILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus        95 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                      .+++|++|++++|.+++..+.    .+. .+++|++|++++| .++.. ++..+..+++|+.|++++|.+++
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLE----LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHH----HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             hCCCCCeEEeeCcEEcHHHHH----HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            355666666666665554333    332 3556666666655 33321 22223355566666666655543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=2.2e-05  Score=57.72  Aligned_cols=81  Identities=22%  Similarity=0.326  Sum_probs=61.5

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCC-CCCCChhhhcCC----CCCcEEeccCCC-CCCCcchhhh
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANH-FNDSILPYLNTL----ISLTTLILRENN-IEGSRTIEGL  170 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~lp~~~~  170 (203)
                      ..|+.||++++.++..    ++..+..+++|++|+|+++. +++.--..+..+    ++|+.|+|+++. ++. -....+
T Consensus        61 ~~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-~Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-KGIIAL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-HHHHHG
T ss_pred             ceEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-HHHHHH
Confidence            4799999999987763    33378899999999999985 775544556664    479999999974 775 222356


Q ss_pred             CCCCCCcEEEEe
Q 035976          171 SNLRNLQLLDLR  182 (203)
Q Consensus       171 ~~l~~L~~L~l~  182 (203)
                      ..+++|++|+++
T Consensus       136 ~~~~~L~~L~L~  147 (176)
T 3e4g_A          136 HHFRNLKYLFLS  147 (176)
T ss_dssp             GGCTTCCEEEEE
T ss_pred             hcCCCCCEEECC
Confidence            778888888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.72  E-value=2.4e-05  Score=57.80  Aligned_cols=81  Identities=15%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             ccCCCCCCCEEEccCC-CCCCC----ChhhhcCCCCCcEEeccCCCCCCC----cchhhhCCCCCCcEEEEe--------
Q 035976          120 SNGSLKQLKILNLEAN-HFNDS----ILPYLNTLISLTTLILRENNIEGS----RTIEGLSNLRNLQLLDLR--------  182 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----lp~~~~~~l~~L~~L~l~--------  182 (203)
                      .+...+.|++|+|++| .+...    +...+...++|+.|+|++|.+...    +.. .+...++|++|+|+        
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHH
Confidence            5677899999999999 88742    334567788999999999999751    222 45566899999998        


Q ss_pred             -------cCCCCCCCEEEc--cCCCCCc
Q 035976          183 -------LANLTNLKTLDL--RDCGITT  201 (203)
Q Consensus       183 -------~~~l~~L~~L~L--~~N~l~~  201 (203)
                             +...++|++|+|  ++|.|..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence                   666778999999  8898863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.71  E-value=3.8e-05  Score=62.92  Aligned_cols=52  Identities=13%  Similarity=0.196  Sum_probs=26.0

Q ss_pred             CCCCcEEeccCCCCCCCcchhhh---CCCCCCcEEEEe---------------cCCCCCCCEEEccCCCCC
Q 035976          148 LISLTTLILRENNIEGSRTIEGL---SNLRNLQLLDLR---------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       148 l~~L~~L~L~~N~l~~~lp~~~~---~~l~~L~~L~l~---------------~~~l~~L~~L~L~~N~l~  200 (203)
                      +++|+.|+|.+|.+....+. .+   ..+++|++|+|+               +..+++|+.|+|++|.|+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            45566666665555431211 11   234556666665               122455666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.62  E-value=1.4e-05  Score=65.58  Aligned_cols=102  Identities=19%  Similarity=0.193  Sum_probs=68.0

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhc--CCCCCcEEeccC--CCCCCC---
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLN--TLISLTTLILRE--NNIEGS---  164 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~---  164 (203)
                      .+..+++|+.|.+++|.-.. ++     .+ .+++|+.|++..+.++......+.  .+++|+.|+|+.  |...+.   
T Consensus       167 ll~~~P~L~~L~L~g~~~l~-l~-----~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLS-IG-----KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCB-CC-----SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHhcCCCCcEEEEeCCCCce-ec-----cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            44667899999998873111 33     22 278899999988887643333443  689999998853  222211   


Q ss_pred             --cchhhh--CCCCCCcEEEEe--------------cCCCCCCCEEEccCCCCCc
Q 035976          165 --RTIEGL--SNLRNLQLLDLR--------------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       165 --lp~~~~--~~l~~L~~L~l~--------------~~~l~~L~~L~L~~N~l~~  201 (203)
                        +.. .+  ..+++|++|++.              ...+++|+.|+|+.|.|..
T Consensus       240 ~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          240 NVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             GGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence              111 22  357899999996              2357889999999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.46  E-value=0.00064  Score=55.83  Aligned_cols=59  Identities=10%  Similarity=0.115  Sum_probs=24.9

Q ss_pred             cCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976          121 NGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       121 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~  182 (203)
                      |.++.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++. ++...|.++.+|+.+++.
T Consensus       307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEES
T ss_pred             ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEEC
Confidence            334444444444332 22122233444455555544332 332 433445555555555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.41  E-value=0.00089  Score=54.98  Aligned_cols=102  Identities=13%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      ....|.+...|+.+.+..+...  +...   .+.+++.|+.+.+. +.++..-...|..+.+|+.+.+..+ ++. +...
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~~--I~~~---aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~  328 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVVS--IGTG---AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ-ILDD  328 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCCE--ECTT---TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTT
T ss_pred             ccceeeecccccEEecccccce--ecCc---ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE-ehHh
Confidence            3456788889999998765432  3331   67788999999996 4455344457889999999999865 665 7767


Q ss_pred             hhCCCCCCcEEEEe----------cCCCCCCCEEEccCCC
Q 035976          169 GLSNLRNLQLLDLR----------LANLTNLKTLDLRDCG  198 (203)
Q Consensus       169 ~~~~l~~L~~L~l~----------~~~l~~L~~L~L~~N~  198 (203)
                      .|..+.+|+.+.+.          |..+++|+.+++.+|.
T Consensus       329 aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             HhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence            89999999999986          8999999999998774

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.37  E-value=0.00059  Score=55.59  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL  170 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~  170 (203)
                      ..+.....|+.+.+..+ ++. +...   .+..+..|+.+.+..+ +...-...|..+.+|+.+.+.++.++. ++...|
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~-I~~~---aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF  306 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTS-IGSF---LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVF  306 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCE-ECTT---TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTT
T ss_pred             ccccCCccceEEEcCCC-ccE-eCcc---ccceeehhcccccccc-ceeccccccccccccccccccccccce-ehhhhh
Confidence            44555666666666554 333 2221   4555666676666433 332223456667777777777766665 665667


Q ss_pred             CCCCCCcEEEEe----------cCCCCCCCEEEccC
Q 035976          171 SNLRNLQLLDLR----------LANLTNLKTLDLRD  196 (203)
Q Consensus       171 ~~l~~L~~L~l~----------~~~l~~L~~L~L~~  196 (203)
                      ..+.+|+.+.+.          |..+++|+.+.+..
T Consensus       307 ~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          307 MDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred             cCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence            777777777764          66667777666643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.37  E-value=0.00049  Score=47.87  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=26.5

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN  138 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~  138 (203)
                      +|++|+|++|.|+. +|..   .|..+++|++|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTA-LPPG---LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSS-CCTT---TGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCc-cChh---hhhhccccCEEEecCCCee
Confidence            57788888888877 4431   5666777888888887764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.29  E-value=0.00076  Score=55.40  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=28.3

Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~  182 (203)
                      .|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++. ++...|..+.+|+.+++.
T Consensus       315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEE
T ss_pred             hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEEC
Confidence            3444555555555422 33222334455555555555443 333 444455555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.22  E-value=0.00022  Score=53.34  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILREN  159 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N  159 (203)
                      +..-+.|+.|+|++|.+...--......+..-+.|++|+|+.|.|+..    +...+..-+.|+.|+|++|
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            334456666666666655321110001233345566666666666532    1123334455666666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.77  E-value=0.0043  Score=50.86  Aligned_cols=75  Identities=15%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe----------cCCCCCC
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR----------LANLTNL  189 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~----------~~~l~~L  189 (203)
                      .+..+.+|+.+.+..+ ++..-...|..+.+|+.+++..+ ++. ++...|.++.+|+.+.+.          |..+++|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECccccEehHHHhhCCCCC
Confidence            4556777888877654 44333456788889999998754 665 766788899999988875          8888899


Q ss_pred             CEEEccCC
Q 035976          190 KTLDLRDC  197 (203)
Q Consensus       190 ~~L~L~~N  197 (203)
                      +.+++..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            99988654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.35  E-value=0.0097  Score=48.28  Aligned_cols=87  Identities=9%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      ....|.+...|+.+.+..+ +.. ++..   .|..+++|+.+.+..+.++..-...|..+.+|+.+.+..+ ++. ++..
T Consensus       255 ~~~aF~~~~~l~~i~l~~~-i~~-i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~  327 (379)
T 4h09_A          255 GSFLLQNCTALKTLNFYAK-VKT-VPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVY  327 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCC-CSE-ECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTT
T ss_pred             Cccccceeehhcccccccc-cee-cccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHH
Confidence            3566778888999888654 444 3331   6778899999999888887444567888999999999754 665 7666


Q ss_pred             hhCCCCCCcEEEEe
Q 035976          169 GLSNLRNLQLLDLR  182 (203)
Q Consensus       169 ~~~~l~~L~~L~l~  182 (203)
                      .|.++.+|+.+.+.
T Consensus       328 aF~~C~~L~~i~ip  341 (379)
T 4h09_A          328 AFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTCTTCCCCCCC
T ss_pred             HhhCCCCCCEEEEC
Confidence            88899999888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.19  E-value=0.013  Score=40.48  Aligned_cols=56  Identities=18%  Similarity=0.102  Sum_probs=43.8

Q ss_pred             CEEEccCCcCC--CcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCC
Q 035976          100 QSLDLSLNAFE--GFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIE  162 (203)
Q Consensus       100 ~~L~L~~N~l~--~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  162 (203)
                      ..++.+++.++  . +|.    .+  .++|+.|+|++|+|+...+..|..+++|+.|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~-vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWAS-LPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTT-SCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCcccc-CCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36778888887  4 665    33  346899999999999665667788999999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.22  E-value=0.023  Score=42.30  Aligned_cols=106  Identities=10%  Similarity=0.088  Sum_probs=72.7

Q ss_pred             CCCCCCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCC---
Q 035976           93 FHPFEELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGS---  164 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---  164 (203)
                      +..-+.|++|+|++| .+...--......+..-+.|+.|+|++|++...    +...+..-+.|+.|+|+.|.|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455678999999986 765421111123567788999999999999743    334455668899999999999851   


Q ss_pred             -cchhhhCCCCCCcEEEEe------------------cCCCCCCCEEEccCCCC
Q 035976          165 -RTIEGLSNLRNLQLLDLR------------------LANLTNLKTLDLRDCGI  199 (203)
Q Consensus       165 -lp~~~~~~l~~L~~L~l~------------------~~~l~~L~~L~L~~N~l  199 (203)
                       +.. .+..-..|++|+|+                  +..=+.|+.|+++.|.+
T Consensus       117 ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             221 34555678888883                  22235688888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 14/113 (12%)

Query: 93  FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLT 152
                 L  L    N      +        +LK L  L L  N+ +D  +  +++L  L 
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 332

Query: 153 TLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRD 196
            L    N +     +  L+NL N+  L            LANLT +  L L D
Sbjct: 333 RLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 32/153 (20%)

Query: 76  NFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN 135
           N    SL G  L +         L  LDL+ N                L +L  L L AN
Sbjct: 220 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGAN 273

Query: 136 HFNDSI--------------------LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN 175
             ++                      +  ++ L +LT L L  NNI     +  L+ L+ 
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR 333

Query: 176 LQLLDLRL------ANLTNLKTLDLRDCGITTI 202
           L   + ++      ANLTN+  L      I+ +
Sbjct: 334 LFFANNKVSDVSSLANLTNINWLSAGHNQISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 123 SLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR 182
           +L +     L   +  D++      L  +TTL      I+   +I+G+  L NL  ++  
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74

Query: 183 LANLTNL 189
              LT++
Sbjct: 75  NNQLTDI 81

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 98  ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFND----SILPYLNTLISLTT 153
           ++QSLD+         + R  +    L+Q +++ L+     +     I   L    +L  
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 154 LILRENNIEGSRTIEGLSNLRNLQLLDLRLANLTNLKTLDLRDCG 198
           L LR N +        L  L+              ++ L L++C 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQT---------PSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 149 ISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------------LANLTNLKTLD 193
           + + +L ++   +  +R  E L  L+  Q++ L                L     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 194 LRDCGIT 200
           LR   + 
Sbjct: 62  LRSNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 13/82 (15%)

Query: 125 KQLKILNLEANHFND----SILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLD 180
             L++L L     +D    S+   L    SL  L L  N +  +  ++ + ++R      
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ----- 423

Query: 181 LRLANLTNLKTLDLRDCGITTI 202
                   L+ L L D   +  
Sbjct: 424 ----PGCLLEQLVLYDIYWSEE 441

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 24/156 (15%)

Query: 7   CLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSNDWDGVKCNATTR--RV 64
           C  +++  LL +K     + +       L+SW+     +  C+  W GV C+  T+  RV
Sbjct: 3   CNPQDKQALLQIKK---DLGNPT----TLSSWLPT---TDCCNRTWLGVLCDTDTQTYRV 52

Query: 65  MHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSL 124
            +L        + S  +L       + +      L  L+                +   L
Sbjct: 53  NNL--------DLSGLNLPK----PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 125 KQLKILNLEANHFNDSILPYLNTLISLTTLILRENN 160
            QL  L +   + + +I  +L+ + +L TL    N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 131 NLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDL 181
           +L  N    ++   L  L  L +L +  NN+ G   I    NL+   +   
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAY 298

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 135 NHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLRLANL----TNLK 190
           N  ++ I    +   SL  L +  N +           L  L      LA +     NLK
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL--IELPALPPRLERLIASFNHLAEVPELPQNLK 327

Query: 191 TLDLRDCGITTI 202
            L +    +   
Sbjct: 328 QLHVEYNPLREF 339

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.47
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.31
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.24
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.24
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.24
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.06
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.42

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=7.2e-27  Score=186.69  Aligned_cols=172  Identities=24%  Similarity=0.351  Sum_probs=145.7

Q ss_pred             cCChHHHHHHHHHHhhccccCCccccccccCCCCCCCCCCCCCCC-CCCccccCCC--CCCeeEEecCCccccccccCcc
Q 035976            6 CCLQKERIGLLALKSFFISISDTEYAEEILTSWVDDDGMSSDCSN-DWDGVKCNAT--TRRVMHLLLNDTAKFNFSYNSL   82 (203)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~-~w~gv~c~~~--~~~v~~l~l~~~~~l~l~~~~l   82 (203)
                      -|.++|++||++||+++.     ||.  .+.+|..  +  ++||. .|.||+|+..  ..+|+.|+|+++   ++.+.  
T Consensus         2 ~c~~~e~~aLl~~k~~~~-----~~~--~l~sW~~--~--~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~---~l~g~--   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG-----NPT--TLSSWLP--T--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGL---NLPKP--   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-----CCG--GGTTCCT--T--SCTTTTCSTTEEECCSSSCCCEEEEEEECC---CCSSC--
T ss_pred             CCCHHHHHHHHHHHHHCC-----CCC--cCCCCCC--C--CCCCCCcCCCeEEeCCCCcEEEEEEECCCC---CCCCC--
Confidence            499999999999999998     664  6899986  3  58982 3999999863  348999999888   66653  


Q ss_pred             ccccccCCccCCCCCCCCEEEccC-CcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCC
Q 035976           83 FGVSLMNFSLFHPFEELQSLDLSL-NAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNI  161 (203)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (203)
                         .. .|..+++|++|++|+|++ |.++|.+|+    .++++++|++|++++|++.+..+..+..+..|+.++++.|.+
T Consensus        66 ---~~-lp~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~  137 (313)
T d1ogqa_          66 ---YP-IPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             ---EE-CCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             ---CC-CChHHhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhcccccccccc
Confidence               11 367899999999999987 899988998    999999999999999999988888899999999999999999


Q ss_pred             CCCcchhhhCCCCCCcEEEEe-----------cCCCCCC-CEEEccCCCCCcC
Q 035976          162 EGSRTIEGLSNLRNLQLLDLR-----------LANLTNL-KTLDLRDCGITTI  202 (203)
Q Consensus       162 ~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L-~~L~L~~N~l~~i  202 (203)
                      .+.+|. .+..++.|++++++           +..+..+ +.++++.|++++.
T Consensus       138 ~~~~p~-~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         138 SGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             ESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             cccCch-hhccCcccceeecccccccccccccccccccccccccccccccccc
Confidence            887886 89999999999987           4455554 8899999988754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=3.9e-17  Score=121.16  Aligned_cols=118  Identities=25%  Similarity=0.296  Sum_probs=80.0

Q ss_pred             CCCCCccccCCCC---------CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976           49 SNDWDGVKCNATT---------RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD  119 (203)
Q Consensus        49 c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  119 (203)
                      | .|..|.|.+..         ..++.|+|+++   .+...       +....|.++++|++|++++|.+....+.    
T Consensus         8 C-~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N---~i~~~-------~~~~~f~~l~~L~~L~L~~N~i~~~~~~----   72 (192)
T d1w8aa_           8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---ELGRI-------SSDGLFGRLPHLVKLELKRNQLTGIEPN----   72 (192)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSC---CCCSB-------CCSCSGGGCTTCCEEECCSSCCCCBCTT----
T ss_pred             E-cCCEEEEeCCCcCccCCCCCCCCCEEEeCCC---CCccc-------ccccccCCCceEeeeecccccccccccc----
Confidence            6 67777775421         23444555444   33321       2355667777888888888887775555    


Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~  182 (203)
                      .+..+++|++|++++|+++...|..|.++++|+.|+|++|+|++ ++.+.|..+++|++++|+
T Consensus        73 ~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECT
T ss_pred             ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccc-cCHHHhcCCccccccccc
Confidence            67777788888888888876556667778888888888888877 666567777777777775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1.3e-15  Score=112.76  Aligned_cols=119  Identities=18%  Similarity=0.150  Sum_probs=100.2

Q ss_pred             eEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhh
Q 035976           65 MHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPY  144 (203)
Q Consensus        65 ~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  144 (203)
                      +.++.+++   ++...         |..+.  +++++|+|++|.|+..++..   .|..+++|++|++++|.+....+..
T Consensus        11 ~~v~Cs~~---~L~~i---------P~~lp--~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~   73 (192)
T d1w8aa_          11 TTVDCTGR---GLKEI---------PRDIP--LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             TEEECTTS---CCSSC---------CSCCC--TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred             CEEEEeCC---CcCcc---------CCCCC--CCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccc
Confidence            35667666   55443         33332  68999999999998755441   6788999999999999999888889


Q ss_pred             hcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCc
Q 035976          145 LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       145 ~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~  201 (203)
                      +..+++|+.|++++|++++ +|+..|.++++|++|+|+           |..+++|++|+|++|.+..
T Consensus        74 ~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          74 FEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccceeeeccccccc-cCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999999999999999998 877789999999999998           7889999999999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=3.7e-15  Score=102.92  Aligned_cols=90  Identities=20%  Similarity=0.270  Sum_probs=70.9

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhh
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGL  170 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~  170 (203)
                      .+..+++|++|++++|.++. +|+    .+..+++|++|++++|.++. +| .+..+++|+.|++++|+++. ++. ..+
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~-lp~----~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l   86 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ-SAAIQPL   86 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS-SSTTGGG
T ss_pred             ccccCCCCCEEECCCCccCc-chh----hhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCC-CCCchhh
Confidence            47888999999999999987 777    78889999999999999984 44 58899999999999999987 552 233


Q ss_pred             CCCCCCcEEEEecCCCCCCCEEEccCCCCCcC
Q 035976          171 SNLRNLQLLDLRLANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       171 ~~l~~L~~L~l~~~~l~~L~~L~L~~N~l~~i  202 (203)
                      .             .+++|+.|++++|+|+.+
T Consensus        87 ~-------------~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          87 V-------------SCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             G-------------GCTTCCEEECTTSGGGGS
T ss_pred             c-------------CCCCCCEEECCCCcCCcC
Confidence            3             455666666666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-14  Score=111.56  Aligned_cols=81  Identities=30%  Similarity=0.334  Sum_probs=44.4

Q ss_pred             CCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------cCCCCCCC
Q 035976          122 GSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------LANLTNLK  190 (203)
Q Consensus       122 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------~~~l~~L~  190 (203)
                      ..+++|++|++++|.+....+..+..+.+++.|++++|.++. ++...+..+++|+.++++           +..+++|+
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~-l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             ccccccccccccccccceeeccccccccccccccccccccce-eccccccccccchhcccccccccccCccccccccccc
Confidence            334444444444444333333333444444444555555544 444445556666666665           56677788


Q ss_pred             EEEccCCCCCcCC
Q 035976          191 TLDLRDCGITTIQ  203 (203)
Q Consensus       191 ~L~L~~N~l~~ip  203 (203)
                      +|+|++|+|+.||
T Consensus       176 ~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         176 TLLLQENSLYTIP  188 (266)
T ss_dssp             EEECCSSCCCCCC
T ss_pred             eeecccCCCcccC
Confidence            8888888877765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.4e-14  Score=109.31  Aligned_cols=110  Identities=24%  Similarity=0.262  Sum_probs=78.5

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      ++..|.++++|++|++++|.+....+.    .+..+++|+.+++++|.++...+..|..+++|+.|++++|++++ ++..
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~~  171 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPER  171 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTT
T ss_pred             cchhhcccccCCEEecCCccccccccc----ccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cchh
Confidence            355677777788888888777664443    55666777777777777775555666777777777777777776 6555


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .|..+++|++++++           |..+++|++|++++|+|++++
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            67777777777776           667777778888887777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-14  Score=110.79  Aligned_cols=107  Identities=25%  Similarity=0.372  Sum_probs=92.9

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      ++..|.++++|++|+|++|.++. ++     .+..+++|++|++++|+++. .+..+..+++|+.|++++|.+.. ++..
T Consensus        47 ~~~~f~~l~~L~~L~L~~N~l~~-l~-----~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~  118 (266)
T d1p9ag_          47 SLATLMPYTRLTQLNLDRAELTK-LQ-----VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG  118 (266)
T ss_dssp             EGGGGTTCTTCCEEECTTSCCCE-EE-----CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCC-CCSS
T ss_pred             CHHHhhccccccccccccccccc-cc-----cccccccccccccccccccc-cccccccccccccccccccccce-eecc
Confidence            35678999999999999999987 55     45679999999999999984 56778899999999999999988 6656


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCCcCC
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+..+.++++|+++           +..+++|+.+++++|+|+++|
T Consensus       119 ~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_         119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            78889999999987           567889999999999998875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-14  Score=105.28  Aligned_cols=112  Identities=22%  Similarity=0.237  Sum_probs=80.1

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      ++..|+|+++   +++..         +..+..+++|++|++++|.++. ++     .+..+++|++|++++|+++...+
T Consensus        19 ~lr~L~L~~n---~I~~i---------~~~~~~l~~L~~L~Ls~N~i~~-l~-----~~~~l~~L~~L~ls~N~i~~l~~   80 (162)
T d1a9na_          19 RDRELDLRGY---KIPVI---------ENLGATLDQFDAIDFSDNEIRK-LD-----GFPLLRRLKTLLVNNNRICRIGE   80 (162)
T ss_dssp             SCEEEECTTS---CCCSC---------CCGGGGTTCCSEEECCSSCCCE-EC-----CCCCCSSCCEEECCSSCCCEECS
T ss_pred             cCcEEECCCC---CCCcc---------CccccccccCCEEECCCCCCCc-cC-----CcccCcchhhhhcccccccCCCc
Confidence            4666777776   55443         3445677888889999888886 44     56778888889998888885444


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcch-hhhCCCCCCcEEEEe--------------cCCCCCCCEEE
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTI-EGLSNLRNLQLLDLR--------------LANLTNLKTLD  193 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~-~~~~~l~~L~~L~l~--------------~~~l~~L~~L~  193 (203)
                      ..+..+++|+.|++++|+++. ++. ..+..+++|++|+++              +..+++|+.||
T Consensus        81 ~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          81 GLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccceeccccccc-cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            455678888889998888886 542 346677777777776              34566777665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.1e-13  Score=95.33  Aligned_cols=100  Identities=22%  Similarity=0.161  Sum_probs=78.2

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      ..++.++++++   .+...         |..+..+++|++|++++|.++. +|     .+..+++|+++++++|+++...
T Consensus        20 ~~L~~L~ls~N---~l~~l---------p~~~~~l~~L~~L~l~~N~i~~-l~-----~~~~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3          20 LLVTHLDLSHN---RLRAL---------PPALAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             TTCCEEECCSS---CCCCC---------CGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCCSSS
T ss_pred             CCCCEEECCCC---ccCcc---------hhhhhhhhcccccccccccccc-cC-----ccccccccCeEECCCCccCCCC
Confidence            45777877777   66543         5578899999999999999998 55     6788999999999999998543


Q ss_pred             -hhhhcCCCCCcEEeccCCCCCC--CcchhhhCCCCCCcEE
Q 035976          142 -LPYLNTLISLTTLILRENNIEG--SRTIEGLSNLRNLQLL  179 (203)
Q Consensus       142 -p~~~~~l~~L~~L~L~~N~l~~--~lp~~~~~~l~~L~~L  179 (203)
                       +..+..+++|+.|++++|+++.  .++......+|+|+.+
T Consensus        82 ~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          82 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             2568899999999999999875  1333345557777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.9e-14  Score=101.16  Aligned_cols=104  Identities=23%  Similarity=0.196  Sum_probs=70.8

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS  171 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~  171 (203)
                      .+.+...+++|+|++|+++. ++.    .+..+++|++|++++|.++ .+ +.+..+++|+.|++++|+++. ++...+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~----~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~-l~~~~~~   84 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IEN----LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICR-IGEGLDQ   84 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC----GGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCE-ECSCHHH
T ss_pred             hccCcCcCcEEECCCCCCCc-cCc----cccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccC-CCccccc
Confidence            34455677777777777776 454    4456777777777777776 23 346677777777777777776 6543456


Q ss_pred             CCCCCcEEEEe------------cCCCCCCCEEEccCCCCCcCC
Q 035976          172 NLRNLQLLDLR------------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       172 ~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+++|++|+++            +..+++|++|++++|.++.+|
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCcccccc
Confidence            67777777776            455677777777777766543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=6.6e-13  Score=98.45  Aligned_cols=118  Identities=25%  Similarity=0.359  Sum_probs=95.3

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.++++++   .+.+.          ..+.++++|++|++++|.+.. ++     .+..++.|+.++++++.+..  
T Consensus        62 ~nL~~L~Ls~N---~l~~~----------~~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~~~~~~--  120 (199)
T d2omxa2          62 NNLTQINFSNN---QLTDI----------TPLKNLTKLVDILMNNNQIAD-IT-----PLANLTNLTGLTLFNNQITD--  120 (199)
T ss_dssp             TTCCEEECCSS---CCCCC----------GGGTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCSEEECCSSCCCC--
T ss_pred             CCcCcCccccc---cccCc----------ccccCCccccccccccccccc-cc-----cccccccccccccccccccc--
Confidence            35666666666   44432          237888999999999998877 44     56789999999999988874  


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      ...+..+++|+.|++++|++.. ++  .+..+++|+.|++.         ++.+++|+.|++++|+|+.++
T Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         121 IDPLKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CGGGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccchhhhhHHhhhhhhhhcc-cc--cccccccccccccccccccCCccccCCCCCCEEECCCCCCCCCc
Confidence            3457889999999999999987 65  48889999999997         788999999999999998874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-13  Score=106.12  Aligned_cols=107  Identities=28%  Similarity=0.285  Sum_probs=93.7

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      ....+....+|+.+++++|.+++..+.    .+..+++|+.|++++|+++...+..|..+++|+.+++++|++++ +++.
T Consensus       121 ~~~~~~~~~~L~~l~l~~N~l~~i~~~----~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~-i~~~  195 (284)
T d1ozna_         121 GPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPH  195 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTT
T ss_pred             cccccchhcccchhhhccccccccChh----HhccccchhhcccccCcccccchhhhccccccchhhhhhccccc-cChh
Confidence            356677888999999999999984454    77888999999999999997777888999999999999999998 5445


Q ss_pred             hhCCCCCCcEEEEe-----------cCCCCCCCEEEccCCCCC
Q 035976          169 GLSNLRNLQLLDLR-----------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       169 ~~~~l~~L~~L~l~-----------~~~l~~L~~L~L~~N~l~  200 (203)
                      .|..+++|++|+++           +..+++|++|+|++|.+.
T Consensus       196 ~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            89999999999998           788999999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.45  E-value=6.2e-14  Score=110.77  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=67.7

Q ss_pred             CCcccccccc-CccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCC
Q 035976           70 NDTAKFNFSY-NSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTL  148 (203)
Q Consensus        70 ~~~~~l~l~~-~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  148 (203)
                      ...++|++++ |.+.|..   |..|.++++|++|+|++|++.+..+.    .+..+..|++++++.|.+.+.+|..+..+
T Consensus        76 ~~L~~L~Ls~~N~l~g~i---P~~i~~L~~L~~L~Ls~N~l~~~~~~----~~~~~~~L~~l~l~~N~~~~~~p~~l~~l  148 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPI---PPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             TTCSEEEEEEETTEESCC---CGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             cccccccccccccccccc---ccccccccccchhhhccccccccccc----cccchhhhcccccccccccccCchhhccC
Confidence            3344455554 4555543   67788999999999999998886665    66667777777777777777777777777


Q ss_pred             CCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976          149 ISLTTLILRENNIEGSRTIEGLSNLRN  175 (203)
Q Consensus       149 ~~L~~L~L~~N~l~~~lp~~~~~~l~~  175 (203)
                      +.|+.+++++|.+++.+|. .+..+..
T Consensus       149 ~~L~~l~l~~n~l~~~ip~-~~~~l~~  174 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPD-SYGSFSK  174 (313)
T ss_dssp             TTCCEEECCSSCCEEECCG-GGGCCCT
T ss_pred             cccceeecccccccccccc-ccccccc
Confidence            7777777777777665554 4444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=9e-13  Score=98.54  Aligned_cols=118  Identities=34%  Similarity=0.375  Sum_probs=90.7

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI  141 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~  141 (203)
                      .+++.|+++++   .+.+.          ..+..+++|++|++++|+++. ++     .+..+++|+.|++++|.+..  
T Consensus        68 ~~L~~L~L~~n---~i~~l----------~~~~~l~~L~~L~l~~n~i~~-l~-----~l~~l~~L~~L~l~~~~~~~--  126 (210)
T d1h6ta2          68 PNVTKLFLNGN---KLTDI----------KPLANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISD--  126 (210)
T ss_dssp             TTCCEEECCSS---CCCCC----------GGGTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCC--
T ss_pred             CCCCEEeCCCc---cccCc----------cccccCccccccccccccccc-cc-----cccccccccccccccccccc--
Confidence            35667777666   54432          235678889999999998887 55     56778889999998888763  


Q ss_pred             hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          142 LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       142 p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .+.+..++.++.++++.|.+++ .+  .+..+++|++++++         +..+++|+.|+|++|+|+.+|
T Consensus       127 ~~~l~~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         127 INGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred             cccccccccccccccccccccc-cc--cccccccccccccccccccccccccCCCCCCEEECCCCCCCCCh
Confidence            3457788888888888888876 44  46778889998887         678889999999999988764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=2.3e-12  Score=95.42  Aligned_cols=117  Identities=26%  Similarity=0.331  Sum_probs=97.0

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      +++.+++.++   .+...          +.+..+++|++|++++|++++ ++     .+..+++|++|++++|.+.. ++
T Consensus        41 ~l~~L~l~~~---~i~~l----------~~l~~l~nL~~L~Ls~N~l~~-~~-----~l~~l~~L~~L~l~~n~~~~-~~  100 (199)
T d2omxa2          41 QVTTLQADRL---GIKSI----------DGVEYLNNLTQINFSNNQLTD-IT-----PLKNLTKLVDILMNNNQIAD-IT  100 (199)
T ss_dssp             TCCEEECTTS---CCCCC----------TTGGGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCC-CG
T ss_pred             CCCEEECCCC---CCCCc----------cccccCCCcCcCccccccccC-cc-----cccCCccccccccccccccc-cc
Confidence            4667777776   44332          346778999999999999998 44     57889999999999999883 43


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                       .+..++.|+.|++++|.+.. ++  .+..+++|+.|+++         +..+++|+.|++.+|++++++
T Consensus       101 -~l~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2         101 -PLANLTNLTGLTLFNNQITD-ID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             -GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG
T ss_pred             -cccccccccccccccccccc-cc--ccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCc
Confidence             48899999999999999887 54  48899999999998         778889999999999998764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=2.9e-12  Score=95.71  Aligned_cols=117  Identities=29%  Similarity=0.367  Sum_probs=95.9

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      .++.++++++   .+...          ..+..+++|++|++++|.+++ ++     .+..+++|++|++++|++++ +|
T Consensus        47 ~L~~L~l~~~---~i~~l----------~~l~~l~~L~~L~L~~n~i~~-l~-----~~~~l~~L~~L~l~~n~i~~-l~  106 (210)
T d1h6ta2          47 SIDQIIANNS---DIKSV----------QGIQYLPNVTKLFLNGNKLTD-IK-----PLANLKNLGWLFLDENKVKD-LS  106 (210)
T ss_dssp             TCCEEECTTS---CCCCC----------TTGGGCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCC-GG
T ss_pred             CccEEECcCC---CCCCc----------hhHhhCCCCCEEeCCCccccC-cc-----ccccCccccccccccccccc-cc
Confidence            3566666666   44332          236779999999999999998 55     45789999999999999984 44


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                       .+..+++|+.|++++|.+.. ++  .+..++.++.++++         +..+++|+.+++++|++++++
T Consensus       107 -~l~~l~~L~~L~l~~~~~~~-~~--~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~  172 (210)
T d1h6ta2         107 -SLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV  172 (210)
T ss_dssp             -GGTTCTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             -cccccccccccccccccccc-cc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence             58899999999999999887 65  58889999999987         667889999999999998764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=1.5e-11  Score=96.32  Aligned_cols=134  Identities=20%  Similarity=0.251  Sum_probs=92.8

Q ss_pred             CCCCCccccCCC---------CCCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhh
Q 035976           49 SNDWDGVKCNAT---------TRRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYD  119 (203)
Q Consensus        49 c~~w~gv~c~~~---------~~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  119 (203)
                      | .|.++.|.+.         ...++.|+++++   .+...        ++..|.++++|++|++++|.+....|.    
T Consensus        10 c-~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N---~i~~l--------~~~~f~~l~~L~~L~l~~n~~~~i~~~----   73 (305)
T d1xkua_          10 C-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---KITEI--------KDGDFKNLKNLHTLILINNKISKISPG----   73 (305)
T ss_dssp             E-ETTEEECTTSCCCSCCCSCCTTCCEEECCSS---CCCCB--------CTTTTTTCTTCCEEECCSSCCCCBCTT----
T ss_pred             e-cCCEEEecCCCCCccCCCCCCCCCEEECcCC---cCCCc--------ChhHhhccccccccccccccccccchh----
Confidence            7 7899999652         123455555555   44332        356788999999999999999986566    


Q ss_pred             ccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-------------cCCC
Q 035976          120 SNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-------------LANL  186 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-------------~~~l  186 (203)
                      .|..+++|++|++++|+++ .+|..  ....+..|++..|.+.+ ++...+.....+..++..             +..+
T Consensus        74 ~f~~l~~L~~L~l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l  149 (305)
T d1xkua_          74 AFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  149 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCS-BCCSS--CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             hhhCCCccCEecccCCccC-cCccc--hhhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccc
Confidence            7889999999999999998 45543  34578888888888887 555455555555555544             4445


Q ss_pred             CCCCEEEccCCCCCcC
Q 035976          187 TNLKTLDLRDCGITTI  202 (203)
Q Consensus       187 ~~L~~L~L~~N~l~~i  202 (203)
                      ++|+.+++++|.++.+
T Consensus       150 ~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_         150 KKLSYIRIADTNITTI  165 (305)
T ss_dssp             TTCCEEECCSSCCCSC
T ss_pred             cccCccccccCCcccc
Confidence            5566666666665544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.30  E-value=1.3e-11  Score=96.74  Aligned_cols=99  Identities=20%  Similarity=0.149  Sum_probs=78.5

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCC
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRN  175 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~  175 (203)
                      +++|+.|++++|..+...+.    .+..++.+++|++++|.+++..+..+..+++|++|+|++|+++. +|. .+..+++
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~----~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~-~l~~l~~  243 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG-GLADHKY  243 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT-TTTTCSS
T ss_pred             CCccCEEECCCCcCCCCChh----Hhhccccccccccccccccccccccccccccceeeecccccccc-ccc-ccccccC
Confidence            56788888888887776665    77778888888888888887667777888888888888888886 775 7888888


Q ss_pred             CcEEEEe-----------------cCCCCCCCEEEccCCCCC
Q 035976          176 LQLLDLR-----------------LANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       176 L~~L~l~-----------------~~~l~~L~~L~L~~N~l~  200 (203)
                      |++|+|+                 ...+.+|+.|+|++|.++
T Consensus       244 L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            8888887                 234567999999999876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.7e-11  Score=85.62  Aligned_cols=87  Identities=17%  Similarity=0.108  Sum_probs=70.2

Q ss_pred             CccCCCCCCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchh
Q 035976           90 FSLFHPFEELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIE  168 (203)
Q Consensus        90 ~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~  168 (203)
                      +..+.++++|++|++.+| .++...+.    .|.++++|+.|++++|+++...|..|..+++|+.|+|++|+++. +|..
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~   98 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWK   98 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCST
T ss_pred             cccccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCcccccccccccccceeccCCCCcc-cChh
Confidence            566788999999999766 58874444    78899999999999999997778889999999999999999997 8874


Q ss_pred             hhCCCCCCcEEEEe
Q 035976          169 GLSNLRNLQLLDLR  182 (203)
Q Consensus       169 ~~~~l~~L~~L~l~  182 (203)
                      .|.. .+|+.|+|+
T Consensus        99 ~~~~-~~l~~L~L~  111 (156)
T d2ifga3          99 TVQG-LSLQELVLS  111 (156)
T ss_dssp             TTCS-CCCCEEECC
T ss_pred             hhcc-ccccccccC
Confidence            4433 245555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-11  Score=92.81  Aligned_cols=72  Identities=19%  Similarity=0.257  Sum_probs=47.0

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccC-CCCCCCChhhhcCCCCCcEEeccCCCCCC
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEA-NHFNDSILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                      +...|.++++|++|++++|.+...++..   .+..++.++++.+.. |.+....+..|..+++|+.+++++|.++.
T Consensus        45 ~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          45 QKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CTTTTTTCTTCCEEEEESCTTCCEECSS---SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ChhHhhccchhhhhhhccccccceeecc---ccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            4567889999999999999887755442   345566666666543 45554444555666666666666666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=1.6e-10  Score=86.81  Aligned_cols=56  Identities=30%  Similarity=0.416  Sum_probs=41.3

Q ss_pred             hcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          145 LNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       145 ~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +..+++|+.|++++|.++. .+  .+..+++|+.|+++         +..+++|++|+|++|+|++++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred             hcccccccccccccccccc-ch--hhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCc
Confidence            4556777888888877766 43  36778888888886         567778888888888877664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=5.4e-11  Score=95.27  Aligned_cols=100  Identities=28%  Similarity=0.379  Sum_probs=48.0

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchh----------------hhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEec
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRA----------------YDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLIL  156 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~----------------~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  156 (203)
                      +..+++|++|++++|.+++..+-..                ...+..++++++|++++|++++..  .+..+++|+.|++
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L  336 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFF  336 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEEC
T ss_pred             ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEEC
Confidence            4556666666666666655211000                012233444555555555554321  2444555555555


Q ss_pred             cCCCCCCCcchhhhCCCCCCcEEEEe---------cCCCCCCCEEEccCC
Q 035976          157 RENNIEGSRTIEGLSNLRNLQLLDLR---------LANLTNLKTLDLRDC  197 (203)
Q Consensus       157 ~~N~l~~~lp~~~~~~l~~L~~L~l~---------~~~l~~L~~L~L~~N  197 (203)
                      ++|++++ ++  .+..+++|++|+++         +..+++|+.|+|++|
T Consensus       337 ~~n~l~~-l~--~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         337 ANNKVSD-VS--SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCC-CG--GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCCCCCC-Ch--hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            5555554 43  24555555555554         444455555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=6.9e-11  Score=94.66  Aligned_cols=80  Identities=26%  Similarity=0.315  Sum_probs=69.1

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhC
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLS  171 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~  171 (203)
                      .+..++.++.|++++|.+++ ++     .+..+++|++|++++|+++. ++ .+..+++|++|++++|++++ +++  +.
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~-l~-----~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~-l~~--l~  370 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISD-IS-----PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD-LTP--LA  370 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSC-CG-----GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB-CGG--GT
T ss_pred             ccchhcccCeEECCCCCCCC-Cc-----ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC-Chh--hc
Confidence            46677899999999999998 44     46779999999999999984 44 68999999999999999998 764  89


Q ss_pred             CCCCCcEEEEe
Q 035976          172 NLRNLQLLDLR  182 (203)
Q Consensus       172 ~l~~L~~L~l~  182 (203)
                      ++++|+.|+++
T Consensus       371 ~l~~L~~L~L~  381 (384)
T d2omza2         371 NLTRITQLGLN  381 (384)
T ss_dssp             TCTTCSEEECC
T ss_pred             cCCCCCEeeCC
Confidence            99999999974

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.5e-11  Score=84.30  Aligned_cols=69  Identities=20%  Similarity=0.178  Sum_probs=58.8

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCC
Q 035976           89 NFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIE  162 (203)
Q Consensus        89 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  162 (203)
                      ++..|.++++|+.|++++|+++...+.    .|..+++|++|+|++|+++ .+|........|+.|+|++|.+.
T Consensus        48 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          48 ELRDLRGLGELRNLTIVKSGLRFVAPD----AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CGGGSCSCCCCSEEECCSSCCCEECTT----GGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CchhhccccccCcceeeccccCCcccc----cccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            467899999999999999999995555    7889999999999999999 55555545557999999999985

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=6.3e-14  Score=104.23  Aligned_cols=83  Identities=24%  Similarity=0.302  Sum_probs=59.2

Q ss_pred             cCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch-hhh
Q 035976           92 LFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI-EGL  170 (203)
Q Consensus        92 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~-~~~  170 (203)
                      .+..+++|++|++++|.++. +|.    ....+++|++|++++|+++. + +.+..+++|+.|++++|+++. ++. ..+
T Consensus        65 ~l~~l~~L~~L~Ls~N~i~~-i~~----~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~-~~~~~~l  136 (198)
T d1m9la_          65 SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITN-WGEIDKL  136 (198)
T ss_dssp             CHHHHTTCCEEECCEEEECS-CSS----HHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCC-HHHHHHH
T ss_pred             cccCCccccChhhccccccc-ccc----cccccccccccccccccccc-c-ccccccccccccccccchhcc-ccccccc
Confidence            36677788888888888776 554    33345578888888888873 3 446677888888888888876 542 357


Q ss_pred             CCCCCCcEEEEe
Q 035976          171 SNLRNLQLLDLR  182 (203)
Q Consensus       171 ~~l~~L~~L~l~  182 (203)
                      ..+++|+.|+++
T Consensus       137 ~~l~~L~~L~L~  148 (198)
T d1m9la_         137 AALDKLEDLLLA  148 (198)
T ss_dssp             TTTTTCSEEEEC
T ss_pred             cCCCccceeecC
Confidence            778888888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=2.9e-10  Score=85.33  Aligned_cols=100  Identities=32%  Similarity=0.442  Sum_probs=58.9

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSN  172 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~  172 (203)
                      +..+++++++++++|.++. ++     .+..+++|+.++++.+...+.  ..+...+.+..+.++.+.+.. ..  .+..
T Consensus        81 l~~l~~l~~l~~~~n~~~~-i~-----~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~--~~~~  149 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN-IS--PLAG  149 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred             ccccccccccccccccccc-cc-----ccccccccccccccccccccc--chhccccchhhhhchhhhhch-hh--hhcc
Confidence            4444445555555444443 22     334455555555555444421  223344455555555555544 22  3566


Q ss_pred             CCCCcEEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          173 LRNLQLLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       173 l~~L~~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      .++|+.|+++         +..+++|+.|+|++|++++++
T Consensus       150 ~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~  189 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS  189 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccccchhhcccccceecccCCCccCCCh
Confidence            7788888887         788999999999999998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.06  E-value=2e-12  Score=95.86  Aligned_cols=101  Identities=27%  Similarity=0.325  Sum_probs=86.1

Q ss_pred             ccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhh
Q 035976           91 SLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGL  170 (203)
Q Consensus        91 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~  170 (203)
                      ..+..+++|++|+|++|.++. ++     .+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++. ++  .+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-----~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~--~~  111 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GI  111 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-----CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH--HH
T ss_pred             hHHhcccccceeECcccCCCC-cc-----cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc--cc
Confidence            457778999999999999987 54     5677899999999999998 466656666789999999999997 65  48


Q ss_pred             CCCCCCcEEEEe------------cCCCCCCCEEEccCCCCCc
Q 035976          171 SNLRNLQLLDLR------------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       171 ~~l~~L~~L~l~------------~~~l~~L~~L~L~~N~l~~  201 (203)
                      ..+++|++|+++            +..+++|+.|+|++|.+..
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            889999999997            6889999999999998643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.86  E-value=1.7e-08  Score=79.23  Aligned_cols=110  Identities=24%  Similarity=0.237  Sum_probs=77.2

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL  142 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p  142 (203)
                      +++.|+|+++   +++..         |+.   +++|++|++++|+++. +|.    .   +.+|+.|++++|.++ .++
T Consensus        39 ~l~~LdLs~~---~L~~l---------p~~---~~~L~~L~Ls~N~l~~-lp~----~---~~~L~~L~l~~n~l~-~l~   94 (353)
T d1jl5a_          39 QAHELELNNL---GLSSL---------PEL---PPHLESLVASCNSLTE-LPE----L---PQSLKSLLVDNNNLK-ALS   94 (353)
T ss_dssp             TCSEEECTTS---CCSCC---------CSC---CTTCSEEECCSSCCSS-CCC----C---CTTCCEEECCSSCCS-CCC
T ss_pred             CCCEEEeCCC---CCCCC---------CCC---CCCCCEEECCCCCCcc-ccc----c---hhhhhhhhhhhcccc-hhh
Confidence            4667888777   55433         322   4688999999999986 675    3   457888888888887 333


Q ss_pred             hhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe-----------------------------cCCCCCCCEEE
Q 035976          143 PYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR-----------------------------LANLTNLKTLD  193 (203)
Q Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~-----------------------------~~~l~~L~~L~  193 (203)
                      .   -.+.|++|++++|.++. +|.  +..+++|++|+++                             +..++.++.++
T Consensus        95 ~---lp~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~  168 (353)
T d1jl5a_          95 D---LPPLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIY  168 (353)
T ss_dssp             S---CCTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred             h---hcccccccccccccccc-ccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecc
Confidence            2   12458888888888886 763  5778888888876                             45556677777


Q ss_pred             ccCCCCCcC
Q 035976          194 LRDCGITTI  202 (203)
Q Consensus       194 L~~N~l~~i  202 (203)
                      ++.|.+..+
T Consensus       169 l~~n~~~~~  177 (353)
T d1jl5a_         169 ADNNSLKKL  177 (353)
T ss_dssp             CCSSCCSSC
T ss_pred             ccccccccc
Confidence            777776554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.2e-09  Score=79.94  Aligned_cols=101  Identities=20%  Similarity=0.221  Sum_probs=76.9

Q ss_pred             CCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh-hhhcCCCCCcEEeccC-CCCCCCcchhhhCCCC
Q 035976           97 EELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL-PYLNTLISLTTLILRE-NNIEGSRTIEGLSNLR  174 (203)
Q Consensus        97 ~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~-N~l~~~lp~~~~~~l~  174 (203)
                      +++++|++++|.++. +|..   .|.++++|++|++++|.+...++ ..|..++.++.+.+.. |.+.. ++...|..++
T Consensus        29 ~~l~~L~Ls~n~i~~-l~~~---~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  103 (242)
T ss_dssp             SCCSEEEEESCCCCE-ECTT---TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCT
T ss_pred             CCCCEEECcCCcCCc-cChh---Hhhccchhhhhhhccccccceeeccccccccccccccccccccccc-cccccccccc
Confidence            479999999999998 5441   68889999999999999876544 4678899999998764 67776 6655789999


Q ss_pred             CCcEEEEe------------cCCCCCCCEEEccCCCCCcC
Q 035976          175 NLQLLDLR------------LANLTNLKTLDLRDCGITTI  202 (203)
Q Consensus       175 ~L~~L~l~------------~~~l~~L~~L~L~~N~l~~i  202 (203)
                      +|++++++            ...+..+..+..+++.+..+
T Consensus       104 ~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1         104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             cccccccchhhhcccccccccccccccccccccccccccc
Confidence            99999998            22334455555566666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.67  E-value=6.6e-08  Score=75.69  Aligned_cols=89  Identities=20%  Similarity=0.278  Sum_probs=73.1

Q ss_pred             CCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCc
Q 035976           98 ELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQ  177 (203)
Q Consensus        98 ~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~  177 (203)
                      ++++|+|+++.++. +|+    .   +++|++|++++|+++ .+|..   +.+|+.|++++|+++. ++.  +  .+.|+
T Consensus        39 ~l~~LdLs~~~L~~-lp~----~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~--l--p~~L~  101 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE----L---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD--L--PPLLE  101 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS----C---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS--C--CTTCC
T ss_pred             CCCEEEeCCCCCCC-CCC----C---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh--h--ccccc
Confidence            68899999999987 775    3   578999999999999 66754   4679999999999986 653  2  24699


Q ss_pred             EEEEe---------cCCCCCCCEEEccCCCCCcCC
Q 035976          178 LLDLR---------LANLTNLKTLDLRDCGITTIQ  203 (203)
Q Consensus       178 ~L~l~---------~~~l~~L~~L~L~~N~l~~ip  203 (203)
                      +|+++         ++.+++|+.|++++|.+...+
T Consensus       102 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         102 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccccccccccchhhhccceeeccccccccccc
Confidence            99998         667889999999999887653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.41  E-value=4.9e-08  Score=77.16  Aligned_cols=108  Identities=20%  Similarity=0.250  Sum_probs=75.3

Q ss_pred             CCCCCCCCEEEccCCcCCCcccch-hhhccCCCCCCCEEEccCCCCCCC----ChhhhcCCCCCcEEeccCCCCCCCcch
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENR-AYDSNGSLKQLKILNLEANHFNDS----ILPYLNTLISLTTLILRENNIEGSRTI  167 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~-~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~lp~  167 (203)
                      +...+.|++|++++|.++..-... ....+..+++|+.|++++|.++..    +...+..+++|+.|++++|.+++ ...
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~-~g~  260 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA-RGA  260 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH-HHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc-hhh
Confidence            345678999999999887421000 011456788999999999988632    33456778899999999999875 211


Q ss_pred             h----hhC--CCCCCcEEEEe----------------cCCCCCCCEEEccCCCCCc
Q 035976          168 E----GLS--NLRNLQLLDLR----------------LANLTNLKTLDLRDCGITT  201 (203)
Q Consensus       168 ~----~~~--~l~~L~~L~l~----------------~~~l~~L~~L~L~~N~l~~  201 (203)
                      .    .+.  ..+.|++|+++                ...+++|+.|+|++|+|..
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            1    222  34678999998                2357789999999999864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=7.8e-08  Score=74.31  Aligned_cols=87  Identities=22%  Similarity=0.227  Sum_probs=62.9

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCC-CCCCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEAN-HFNDS  140 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n-~l~~~  140 (203)
                      .++..+++++.   .+....+       ...+..+++|++|+++++.++...+.    .+..+++|++|+++++ .++..
T Consensus        46 ~~L~~LdLs~~---~i~~~~l-------~~l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~  111 (284)
T d2astb2          46 FRVQHMDLSNS---VIEVSTL-------HGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEF  111 (284)
T ss_dssp             BCCCEEECTTC---EECHHHH-------HHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHH
T ss_pred             CCCCEEECCCC---ccCHHHH-------HHHHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCcccccccccccc
Confidence            46778888776   5443311       23467789999999999998876666    7888999999999985 56532


Q ss_pred             -ChhhhcCCCCCcEEeccCC-CCC
Q 035976          141 -ILPYLNTLISLTTLILREN-NIE  162 (203)
Q Consensus       141 -~p~~~~~l~~L~~L~L~~N-~l~  162 (203)
                       +......+++|+.|+++++ .++
T Consensus       112 ~l~~l~~~~~~L~~L~ls~c~~~~  135 (284)
T d2astb2         112 ALQTLLSSCSRLDELNLSWCFDFT  135 (284)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             ccchhhHHHHhccccccccccccc
Confidence             2223456889999999885 444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.6e-08  Score=69.01  Aligned_cols=84  Identities=25%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             CCCCCCCCEEEccCCcCCCcc--cchhhhccCCCCCCCEEEccCCCCCCCChhhhcCCCCCcEEeccCCCCCCCcch---
Q 035976           93 FHPFEELQSLDLSLNAFEGFY--ENRAYDSNGSLKQLKILNLEANHFNDSILPYLNTLISLTTLILRENNIEGSRTI---  167 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~--p~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~lp~---  167 (203)
                      +..+++|++|+|++|+++..-  +.    .+..+++|+.|++++|.++...+-.+.....|+.|++++|.++.....   
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~----~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGT----HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHH----HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            346789999999999998732  22    456789999999999999954333344556799999999999863321   


Q ss_pred             ---hhhCCCCCCcEEE
Q 035976          168 ---EGLSNLRNLQLLD  180 (203)
Q Consensus       168 ---~~~~~l~~L~~L~  180 (203)
                         ..+..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               1356677777775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.2e-08  Score=75.31  Aligned_cols=59  Identities=24%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCC-cCCCc-ccchhhhccCCCCCCCEEEccCC
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLN-AFEGF-YENRAYDSNGSLKQLKILNLEAN  135 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~~l~~L~~L~L~~n  135 (203)
                      .+++.++++++   .+.+.        ....+..+++|++|+++++ .++.. +..    -+..+++|++|+++++
T Consensus        71 ~~L~~L~L~~~---~l~~~--------~~~~l~~~~~L~~L~Ls~c~~itd~~l~~----l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          71 SKLQNLSLEGL---RLSDP--------IVNTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSRLDELNLSWC  131 (284)
T ss_dssp             CCCSEEECTTC---BCCHH--------HHHHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTTCCEEECCCC
T ss_pred             CCccccccccc---CCCcH--------HHHHHhcCCCCcCccccccccccccccch----hhHHHHhccccccccc
Confidence            35677777776   54432        1345677899999999995 56532 121    2346889999999885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.5e-08  Score=72.06  Aligned_cols=73  Identities=21%  Similarity=0.141  Sum_probs=55.9

Q ss_pred             ccCCCCCCCEEEccCCCCCCCC--hhhhcCCCCCcEEeccCCCCCCCcchhhhCCCCCCcEEEEe---------------
Q 035976          120 SNGSLKQLKILNLEANHFNDSI--LPYLNTLISLTTLILRENNIEGSRTIEGLSNLRNLQLLDLR---------------  182 (203)
Q Consensus       120 ~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~lp~~~~~~l~~L~~L~l~---------------  182 (203)
                      ....+++|++|++++|+++...  +..+..+++|+.|++++|+++. ++...+.....|+.++++               
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3356899999999999999643  3456789999999999999998 665344455567777776               


Q ss_pred             ---cCCCCCCCEEE
Q 035976          183 ---LANLTNLKTLD  193 (203)
Q Consensus       183 ---~~~l~~L~~L~  193 (203)
                         +..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence               45677888776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.5e-08  Score=79.12  Aligned_cols=109  Identities=20%  Similarity=0.156  Sum_probs=66.1

Q ss_pred             CeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCCC-
Q 035976           63 RVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSI-  141 (203)
Q Consensus        63 ~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~-  141 (203)
                      .++.|+++.+   ++++..+       ...+..++++++|+|++|.++..-.......+..+++|++|+|++|.++... 
T Consensus         3 ~l~~ld~~~~---~i~~~~~-------~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~   72 (460)
T d1z7xw1           3 DIQSLDIQCE---ELSDARW-------AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV   72 (460)
T ss_dssp             EEEEEEEESC---CCCHHHH-------HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             CCCEEEeeCC---cCChHHH-------HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH
Confidence            4667777777   6655422       2234557888999999998874211100115677889999999999886321 


Q ss_pred             ---hhhhc-CCCCCcEEeccCCCCCCC----cchhhhCCCCCCcEEEEe
Q 035976          142 ---LPYLN-TLISLTTLILRENNIEGS----RTIEGLSNLRNLQLLDLR  182 (203)
Q Consensus       142 ---p~~~~-~l~~L~~L~L~~N~l~~~----lp~~~~~~l~~L~~L~l~  182 (203)
                         ...+. ...+|+.|++++|.++..    ++. .+..+++|++|+++
T Consensus        73 ~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~  120 (460)
T d1z7xw1          73 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLS  120 (460)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECC
T ss_pred             HHHHHHHhcCCCCCCEEECCCCCccccccccccc-hhhccccccccccc
Confidence               12222 235799999999998752    121 34444555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.15  E-value=2.4e-07  Score=73.08  Aligned_cols=78  Identities=24%  Similarity=0.236  Sum_probs=47.4

Q ss_pred             CCCCCCCEEEccCCCCCCC-----ChhhhcCCCCCcEEeccCCCCCCC----cchhhhCCCCCCcEEEEe----------
Q 035976          122 GSLKQLKILNLEANHFNDS-----ILPYLNTLISLTTLILRENNIEGS----RTIEGLSNLRNLQLLDLR----------  182 (203)
Q Consensus       122 ~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~----lp~~~~~~l~~L~~L~l~----------  182 (203)
                      ...+.|+.|++++|.++..     +...+..+++|+.|++++|.++..    +. ..+...++|++|+++          
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~-~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc-ccccccccchhhhhhcCccCchhhH
Confidence            4456677777777776531     122345567777777777776531    22 145566777777776          


Q ss_pred             -----c--CCCCCCCEEEccCCCCC
Q 035976          183 -----L--ANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       183 -----~--~~l~~L~~L~L~~N~l~  200 (203)
                           +  ...+.|+.|++++|+|+
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCC
Confidence                 2  22356777788777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.9e-06  Score=69.23  Aligned_cols=104  Identities=21%  Similarity=0.121  Sum_probs=63.2

Q ss_pred             CCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC----Chhhhc-CCCCCcEEeccCCCCCCC----cc
Q 035976           96 FEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS----ILPYLN-TLISLTTLILRENNIEGS----RT  166 (203)
Q Consensus        96 l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~~----lp  166 (203)
                      ...|+.++++++.++..........+...++|++|+|++|++++.    ++..+. ..+.|+.|+|++|+++..    ++
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            356777888877766532210001233456788888888887532    223332 356688888888887641    22


Q ss_pred             hhhhCCCCCCcEEEEe---------------c-CCCCCCCEEEccCCCCC
Q 035976          167 IEGLSNLRNLQLLDLR---------------L-ANLTNLKTLDLRDCGIT  200 (203)
Q Consensus       167 ~~~~~~l~~L~~L~l~---------------~-~~l~~L~~L~L~~N~l~  200 (203)
                      . .+...++|++|+++               + .....|+.|++.+|.+.
T Consensus       391 ~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         391 A-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             H-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             H-HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            2 35566788888887               1 23346888888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=1.2e-05  Score=56.80  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=54.4

Q ss_pred             CCeeEEecCCccccccccCccccccccCCccCCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCCCC-
Q 035976           62 RRVMHLLLNDTAKFNFSYNSLFGVSLMNFSLFHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFNDS-  140 (203)
Q Consensus        62 ~~v~~l~l~~~~~l~l~~~~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~-  140 (203)
                      ..++.|+|++..  .++...+...    ...+...+.|++|++++|.+...........+...+.|++|++++|.++.. 
T Consensus        15 ~~L~~L~L~~~~--~i~~~~~~~l----~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_          15 TDLKEVNINNMK--RVSKERIRSL----IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             SSCCEEECTTCC--SSCHHHHHHH----HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             CCCcEEEeCCCC--CCCHHHHHHH----HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH
Confidence            557777776541  2222111111    234555677888888888776421111111344567788888888887642 


Q ss_pred             ---ChhhhcCCCCCcEEeccCCCCCC
Q 035976          141 ---ILPYLNTLISLTTLILRENNIEG  163 (203)
Q Consensus       141 ---~p~~~~~l~~L~~L~L~~N~l~~  163 (203)
                         +...+...+.|+.|++++|.+..
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHHHHHhCCcCCEEECCCCcCCC
Confidence               12245566778888888776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.54  E-value=3e-05  Score=54.48  Aligned_cols=46  Identities=13%  Similarity=0.042  Sum_probs=20.8

Q ss_pred             CCCCCCCCEEEccCCcCCCcccchhhhccCCCCCCCEEEccCCCCC
Q 035976           93 FHPFEELQSLDLSLNAFEGFYENRAYDSNGSLKQLKILNLEANHFN  138 (203)
Q Consensus        93 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~  138 (203)
                      +...++|++|++++|.++...-......+...+.++.++++.|.++
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3344555555555555543211111112333455555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=2.6e-05  Score=54.95  Aligned_cols=103  Identities=10%  Similarity=0.094  Sum_probs=66.6

Q ss_pred             CCCCCCEEEccCC-cCCCcccchhhhccCCCCCCCEEEccCCCCCC----CChhhhcCCCCCcEEeccCCCCCCC----c
Q 035976           95 PFEELQSLDLSLN-AFEGFYENRAYDSNGSLKQLKILNLEANHFND----SILPYLNTLISLTTLILRENNIEGS----R  165 (203)
Q Consensus        95 ~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----l  165 (203)
                      +.+.|++|+|+++ .++...-...+..+...+.|++|++++|.+..    .+...+...+.|+.|++++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578899999874 45432111122356777889999999988863    2233455668899999999988751    1


Q ss_pred             chhhhCCCCCCcEEEEe------------------cCCCCCCCEEEccCCC
Q 035976          166 TIEGLSNLRNLQLLDLR------------------LANLTNLKTLDLRDCG  198 (203)
Q Consensus       166 p~~~~~~l~~L~~L~l~------------------~~~l~~L~~L~L~~N~  198 (203)
                      - ..+...+.|++|+++                  +..-++|+.|+++.+.
T Consensus        93 ~-~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 L-RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             H-HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             H-HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            1 135566778888775                  3334567777776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.42  E-value=0.00023  Score=49.67  Aligned_cols=104  Identities=18%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             CCCCCCCEEEccC-CcCCCcccchhhhccCCCCCCCEEEccCCCCCCCCh----hhhcCCCCCcEEeccCCCCCCC----
Q 035976           94 HPFEELQSLDLSL-NAFEGFYENRAYDSNGSLKQLKILNLEANHFNDSIL----PYLNTLISLTTLILRENNIEGS----  164 (203)
Q Consensus        94 ~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~----  164 (203)
                      .+.+.|++|++++ +.++...-...+..+...++|++|++++|.++....    ..+...+.++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567899999987 456542211122356788999999999999874322    3445678899999999998742    


Q ss_pred             cchhhhCCCCCCcEEEEe-----------------cCCCCCCCEEEccCCC
Q 035976          165 RTIEGLSNLRNLQLLDLR-----------------LANLTNLKTLDLRDCG  198 (203)
Q Consensus       165 lp~~~~~~l~~L~~L~l~-----------------~~~l~~L~~L~L~~N~  198 (203)
                      +. ..+...++|+.+++.                 +...+.|+.|+++.+.
T Consensus        94 l~-~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HH-HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            22 245677888887775                 5567889999988765