Citrus Sinensis ID: 035978

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---

MELAHEGSNVDGEIEERERLNPGEPSFRKSHVYRHHFPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRRSWSLNRKSFLKRSVGVQVQGRGGYLRL

ccccccccccccHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccccHHHHHHHHHHcccccHHHHHHHccccccccccccccEEEEEEcccccccHHHHHHHHcccccHHHHHHHHccccccEEEEccccEEEEcccccccccccccccEEEEEEEEHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc

cccccccccccccHHHHccccccccccccccccccccccccccEEEEEccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHcccccHHHHHHHHHcccccccEccEEEEEEcccccccccHEEEEEEEEccccEEEEEcccccccccccccHcHHccccccccccccccccccEEEHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccEEEc

melahegsnvdgeieererlnpgepsfrkshvyrhhfpgmvrkkayifdghgkyyikewdltdgignefswyhvelpkgsQKLAQSAQYLIDvlcpplklqdilslvsngpfcgyvdGALVFrvnspgpassnftFRIAAritdnsvitvslgrvprlgfspmgqsllseipsvenhrgepkegsgiVIREHVLEFLLTMnhseeadnpvpkslSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLeerrfpkmHLNLQRLLQYFRESkercsskhwfssddINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLplsiitgvfgmnvggvpwtlqeepkdgfrNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRRSWSLNRKSFLKRSVgvqvqgrggylrl

melahegsnvdgeieererlnpgepsfrkshvyrhhfpgmvRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSeipsvenhrgepkegsgIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLeerrfpkmhLNLQRLLQYFRESKERcsskhwfssddinALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRRswslnrksflkrsvgvqvqgrggylrl

MELAHEGSNVDGEIEERERLNPGEPSFRKSHVYRHHFPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNvvflcvamlllvllcflcPAAYSRIAAWQRRRAMRRSWSLNRKSFLKRSvgvqvqgrggYLRL

******************************HVYRHHFPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGF*************************GIVIREHVLEFLLTMN***********SLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRRSWSLNRKSFLKRSVGVQV*********

************************************FPGMVRKKAYIFDGHGKYYIKE****DGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFLLTM***********KSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDK******K*MLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQR*****************************YL**

*******************LNPGEPSFRKSHVYRHHFPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSV********EGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLEERRFPKMHLNLQRLLQYFR*********HWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRRSWSLNRKSFLKRSVGVQVQGRGGYLRL

*****************************SHVYRHHFPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPM*********************SGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRRSW*LNRKSFLKRSVGVQVQGRG*Y*RL

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MELAHEGSNVDGEIEERERLNPGEPSFRKSHVYRHHFPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHxxxxxxxxxxxxxxxxxxxxxLDKGGFALKKQMLEERRFPKMHLNLQRLLQYFRESKERCSSKHWFSSDDINAxxxxxxxxxxxxxxxxxxxxxVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAWQRRRAMRRSWSLNRKSFLKRSVGVQVQGRGGYLRL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		443	2.2.26 [Sep-21-2011]
A1JNE0		327	Zinc transport protein Zn	yes	no	0.392	0.532	0.286	2e-13
Q66A75		327	Zinc transport protein Zn	yes	no	0.392	0.532	0.275	3e-12
Q8ZE46		327	Zinc transport protein Zn	yes	no	0.392	0.532	0.275	3e-12
A7FHP6		327	Zinc transport protein Zn	yes	no	0.392	0.532	0.275	3e-12
Q6D5P8		327	Zinc transport protein Zn	yes	no	0.523	0.709	0.247	4e-11
Q7N3Y5		327	Zinc transport protein Zn	yes	no	0.331	0.449	0.286	5e-11
C6DJ80		327	Zinc transport protein Zn	yes	no	0.336	0.455	0.286	2e-10
A4WAT9		327	Zinc transport protein Zn	yes	no	0.336	0.455	0.256	2e-09
B5XRN5		327	Zinc transport protein Zn	yes	no	0.602	0.816	0.220	3e-09
A7MLI3		327	Zinc transport protein Zn	yes	no	0.372	0.504	0.260	4e-09

>sp\|A1JNE0\|ZNTB_YERE8 Zinc transport protein ZntB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=zntB PE=3 SV=1	Back alignment and function desciption

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 11/185 (5%)

Query: 211 PKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGFALKKQMLEERRFPKMHLN 270
           P +  N +V IVD   DH  + +  L  ++  +E +L +     + QM   R   K  + 
Sbjct: 140 PTNSGNWLVEIVDGLTDHTSEFIEDLHDKIIDLEDDLLEQKIPARGQMALLR---KQLIV 196

Query: 271 LQRLLQYFRESKERCSSKH--WFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLD 328
           L+R +   R+   R +S+   W + DD   ++E++ RL R  E++     R   +   + 
Sbjct: 197 LRRYMAPQRDVFSRLASERLPWMNDDDRRRMQEISERLGRGLEDLDSSIARTAVLSDEIS 256

Query: 329 SWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAM 388
           S  A+ +NR+ Y +S L++  LP + +TG+FG+N+GG+P        D F    F C+ +
Sbjct: 257 SLMADAMNRRTYTMSLLAMVFLPTTFLTGLFGVNLGGIPGN-----TDSFGFATF-CMML 310

Query: 389 LLLVL 393
           ++LVL
Sbjct: 311 VVLVL 315

Mediates efflux of zinc ions.
Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

>sp\|Q66A75\|ZNTB_YERPS Zinc transport protein ZntB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=zntB PE=3 SV=1	Back alignment and function description

>sp\|Q8ZE46\|ZNTB_YERPE Zinc transport protein ZntB OS=Yersinia pestis GN=zntB PE=3 SV=1	Back alignment and function description

>sp\|A7FHP6\|ZNTB_YERP3 Zinc transport protein ZntB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=zntB PE=3 SV=1	Back alignment and function description

>sp\|Q6D5P8\|ZNTB_ERWCT Zinc transport protein ZntB OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=zntB PE=3 SV=1	Back alignment and function description

>sp\|Q7N3Y5\|ZNTB_PHOLL Zinc transport protein ZntB OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=zntB PE=3 SV=1	Back alignment and function description

>sp\|C6DJ80\|ZNTB_PECCP Zinc transport protein ZntB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=zntB PE=3 SV=1	Back alignment and function description

>sp\|A4WAT9\|ZNTB_ENT38 Zinc transport protein ZntB OS=Enterobacter sp. (strain 638) GN=zntB PE=3 SV=1	Back alignment and function description

>sp\|B5XRN5\|ZNTB_KLEP3 Zinc transport protein ZntB OS=Klebsiella pneumoniae (strain 342) GN=zntB PE=3 SV=1	Back alignment and function description

>sp\|A7MLI3\|ZNTB_CROS8 Zinc transport protein ZntB OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=zntB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		443
449529545		467	PREDICTED: LOW QUALITY PROTEIN: uncharac	1.0	0.948	0.774	0.0
449459552		467	PREDICTED: uncharacterized protein LOC10	1.0	0.948	0.771	0.0
297835736		453	hypothetical protein ARALYDRAFT_342773 [	0.986	0.964	0.737	0.0
225429226		454	PREDICTED: uncharacterized protein LOC10	0.995	0.971	0.75	0.0
356554830		467	PREDICTED: uncharacterized protein LOC10	0.993	0.942	0.706	0.0
356549493		467	PREDICTED: uncharacterized protein LOC10	0.993	0.942	0.706	0.0
22325463		434	Magnesium transporter CorA-like-like pro	0.939	0.958	0.717	1e-178
224105857		510	predicted protein [Populus trichocarpa]	0.968	0.841	0.652	1e-173
124359203		466	metal ion transporter , putative [Medica	0.988	0.939	0.690	1e-173
357446055		457	Zinc transport protein zntB [Medicago tr	0.966	0.936	0.697	1e-173

>gi\|449529545\|ref\|XP_004171760.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225116 [Cucumis sativus]	Back alignment and taxonomy information

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/456 (77%), Positives = 389/456 (85%), Gaps = 13/456 (2%)

Query: 1   MELAHEGSNVDGEIEERERLNPGEPSFRKSHVYRHHFPGMVRKKAYIFDGHGKYYIKEWD 60
           MELA      +GE++E  R        R++ + R  FPGMVRK+AYIFDG+G YY KEWD
Sbjct: 12  MELAGAEPVANGELDELAREPSARLLLREAGLSRTRFPGMVRKRAYIFDGNGDYYNKEWD 71

Query: 61  LTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGAL 120
           LT+G G EF WYHVELPKG+QKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCG+VDGAL
Sbjct: 72  LTEGRGKEFCWYHVELPKGNQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGHVDGAL 131

Query: 121 VFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVE---NH 177
           VFRVNSPGPASS+FTFRIAARIT+NSVITVSLGRVPRLGFSP+GQSLLSE+PSVE   N 
Sbjct: 132 VFRVNSPGPASSDFTFRIAARITENSVITVSLGRVPRLGFSPVGQSLLSEVPSVETPSNF 191

Query: 178 RGEPKEGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLE 237
           RGE +E  GIVIREHVLEFLLTMNHSEEADNPVP SLSNLVVHI+DTH+DHLQDVVTKLE
Sbjct: 192 RGEQRETGGIVIREHVLEFLLTMNHSEEADNPVPSSLSNLVVHIIDTHMDHLQDVVTKLE 251

Query: 238 IELDSVELELDKGGFALKKQMLEERRFPKMHLNLQRLL-------QYFRESKERCSSKHW 290
           IELDSVELE+DKGGFALKKQML++RRFPKM+LNLQRLL       Q F   +E+CSSK W
Sbjct: 252 IELDSVELEMDKGGFALKKQMLDDRRFPKMNLNLQRLLQVIAHGEQVFPRVREKCSSKQW 311

Query: 291 FSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALL 350
           F+S+DI+ALEEL GRLRRLKENVGFI NRVTAIQAGLDSWQAEQINRKLYYLSFLSI  L
Sbjct: 312 FASEDISALEELIGRLRRLKENVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFL 371

Query: 351 PLSIITGVFGMNVGGVPWTLQEEP--KDGFRNVVFLCVAMLLLVLLCFLCPAAYSRIAAW 408
           PLS+ITGVFGMNVGGVPWT Q  P  K+GFRNV+FLCV MLLLVLLCF  PA Y+ +A W
Sbjct: 372 PLSVITGVFGMNVGGVPWTEQRNPELKEGFRNVMFLCVVMLLLVLLCFSFPALYTYLATW 431

Query: 409 QRRRAMRRSWSLNRKSFLKRSVGVQVQGR-GGYLRL 443
            RRR MR+SWSLNRKSFLKR+V   V+ R GGYLR+
Sbjct: 432 NRRRKMRKSWSLNRKSFLKRTVRNGVEDRGGGYLRI 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449459552\|ref\|XP_004147510.1\| PREDICTED: uncharacterized protein LOC101215859 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297835736\|ref\|XP_002885750.1\| hypothetical protein ARALYDRAFT_342773 [Arabidopsis lyrata subsp. lyrata] gi\|297331590\|gb\|EFH62009.1\| hypothetical protein ARALYDRAFT_342773 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|225429226\|ref\|XP_002263383.1\| PREDICTED: uncharacterized protein LOC100256074 [Vitis vinifera] gi\|296088080\|emb\|CBI35439.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356554830\|ref\|XP_003545745.1\| PREDICTED: uncharacterized protein LOC100817220 [Glycine max]	Back alignment and taxonomy information

>gi\|356549493\|ref\|XP_003543128.1\| PREDICTED: uncharacterized protein LOC100804031 [Glycine max]	Back alignment and taxonomy information

>gi\|22325463\|ref\|NP_178511.2\| Magnesium transporter CorA-like-like protein [Arabidopsis thaliana] gi\|19310534\|gb\|AAL85000.1\| At2g04305/T23O15.7 [Arabidopsis thaliana] gi\|27363404\|gb\|AAO11621.1\| At2g04305/T23O15.7 [Arabidopsis thaliana] gi\|330250726\|gb\|AEC05820.1\| Magnesium transporter CorA-like-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224105857\|ref\|XP_002313956.1\| predicted protein [Populus trichocarpa] gi\|222850364\|gb\|EEE87911.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|124359203\|gb\|ABN05714.1\| metal ion transporter , putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357446055\|ref\|XP_003593305.1\| Zinc transport protein zntB [Medicago truncatula] gi\|355482353\|gb\|AES63556.1\| Zinc transport protein zntB [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		443
TAIR\|locus:2828240		434	AT2G04305 [Arabidopsis thalian	0.907	0.926	0.704	1.5e-152
TIGR_CMR\|SO_3984		321	SO_3984 "magnesium transporter	0.347	0.479	0.293	1.2e-10
UNIPROTKB\|Q9KPN2		327	VC2334 "Putative uncharacteriz	0.401	0.544	0.273	4.1e-09
TIGR_CMR\|VC_2334		327	VC_2334 "conserved hypothetica	0.401	0.544	0.273	4.1e-09
UNIPROTKB\|P64423		327	ydaN "predicted Zn(II) transpo	0.336	0.455	0.256	1.2e-07
TIGR_CMR\|SPO_A0218		322	SPO_A0218 "magnesium transport	0.318	0.437	0.264	3.4e-07

TAIR\|locus:2828240 AT2G04305 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
 Identities = 300/426 (70%), Positives = 337/426 (79%)

Query:    12 GEIEERERLNPGEPSFRKSHVYR-HHFPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFS 70
             G+  + E      PS   SH +  H F GMVR++AYIFDG GKYY KEWDL +G G EF 
Sbjct:     9 GDETDLESFTSSVPSRDASHRFSSHQFSGMVRQRAYIFDGDGKYYNKEWDLAEGTGKEFC 68

Query:    71 WYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYVDGALVFRVNSPGPA 130
             WYHVELPKG+QKL+QSAQ+LID LCPPLKLQDIL+L SNGPFCG+VDGALVFRVNSPGPA
Sbjct:    69 WYHVELPKGNQKLSQSAQHLIDALCPPLKLQDILALASNGPFCGHVDGALVFRVNSPGPA 128

Query:   131 SSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIR 190
             SS+ TF+IAARIT+NSVITVSLGRVPRLGFSPMGQSLLSE+PSV              I 
Sbjct:   129 SSSNTFKIAARITENSVITVSLGRVPRLGFSPMGQSLLSEVPSV--------------IE 174

Query:   191 EHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG 250
             EHVLEFLL MNHSEEADNPVP S+SNLVVHI+DTHVD LQDVVT+LEIELD VELE+D+G
Sbjct:   175 EHVLEFLLKMNHSEEADNPVPTSVSNLVVHIIDTHVDRLQDVVTELEIELDGVELEMDRG 234

Query:   251 GFALKKQMLEERRFPKMHLNLQRLLQY-------FRESKERCSSKHWFSSDDINALEELT 303
             GFA+KK+ML++RRFPK+HLNLQRLLQ        F   KE+CS+K WF ++DI++LEEL 
Sbjct:   235 GFAMKKKMLDDRRFPKLHLNLQRLLQVIAHGEQVFPRVKEKCSTKPWFLAEDIHSLEELI 294

Query:   304 GRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNV 363
             GRLRRLKENVGFI NRVTAIQAGLDSWQAEQINRKLYYLSFLSI  LPLSIITGVFGMNV
Sbjct:   295 GRLRRLKENVGFIANRVTAIQAGLDSWQAEQINRKLYYLSFLSIIFLPLSIITGVFGMNV 354

Query:   364 GGVPWTLQEEP--KDGFRNXXXXXXXXXXXXXXXXXXPAAYSRIAAWQRRRAMRRSWSLN 421
             GGVPWT Q++P  +DGFRN                  PA YSRIA+W   R M+RSWSLN
Sbjct:   355 GGVPWTGQDKPELRDGFRNVMYICLIMLVLVLCCFGFPALYSRIASWWGTRDMKRSWSLN 414

Query:   422 RKSFLK 427
             R+SF K
Sbjct:   415 RRSFKK 420

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TIGR_CMR\|SO_3984 SO_3984 "magnesium transporter, putative" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KPN2 VC2334 "Putative uncharacterized protein VC2334" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2334 VC_2334 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|P64423 ydaN "predicted Zn(II) transporter" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_A0218 SPO_A0218 "magnesium transporter, CorA family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pg.C_scaffold_3002536	annotation not avaliable (453 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		443
cd12833		290	cd12833, ZntB-like_1, Salmonella typhimurium Zn2+	7e-25
pfam01544		291	pfam01544, CorA, CorA-like Mg2+ transporter protei	1e-22
cd12834		290	cd12834, ZntB_u1, Uncharacterized bacterial subgro	7e-19
COG0598		322	COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan	8e-19
cd12824		290	cd12824, ZntB-like, Salmonella typhimurium Zn2+ tr	9e-17
PRK09546		324	PRK09546, zntB, zinc transporter; Reviewed	7e-13
cd12822		289	cd12822, TmCorA-like, Thermotoga maritima CorA-lik	8e-10
cd11744		286	cd11744, MIT_CorA-like, metal ion transporter CorA	1e-08
cd12821		285	cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S	1e-08
cd12829		305	cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1	4e-08
cd12826		281	cd12826, EcCorA_ZntB-like_u1, uncharacterized bact	4e-04

>gnl\|CDD\|213367 cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter ZntB-like subgroup	Back alignment and domain information

 Score =  103 bits (259), Expect = 7e-25
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 21/195 (10%)

Query: 211 PKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKGGF--------ALKKQMLEER 262
           PKS  + +  + +   D ++DV+ +LE  LD +E  + +            L++Q +  R
Sbjct: 102 PKSPGDFLAALAERLTDRMEDVIDELEDRLDELEERVLEEEDEELRGELAELRRQAIALR 161

Query: 263 RFPKMHLNLQR-LLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVT 321
           R+    L  QR  L+             W S DD   L E   RL R  E++  I  R  
Sbjct: 162 RY----LAPQRDALERLAREDLP-----WLSDDDRLRLREAADRLTRYIEDLDAIRERAA 212

Query: 322 AIQAGLDSWQAEQINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNV 381
            +Q  L + +AEQ+NR++Y LS ++   LPL  +TG+ G+NVGG+P    E P   F   
Sbjct: 213 VLQEELTNRRAEQMNRRMYVLSIVAAIFLPLGFLTGLLGINVGGIPGA--ENP-WAFWIF 269

Query: 382 VFLCVAMLLLVLLCF 396
             L V + + +LL F
Sbjct: 270 CGLLVVLAVGLLLLF 284

A bacterial subgroup belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 290

>gnl\|CDD\|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein	Back alignment and domain information

>gnl\|CDD\|213368 cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily	Back alignment and domain information

>gnl\|CDD\|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|213358 cd12824, ZntB-like, Salmonella typhimurium Zn2+ transporter ZntB-like subfamily	Back alignment and domain information

>gnl\|CDD\|181941 PRK09546, zntB, zinc transporter; Reviewed	Back alignment and domain information

>gnl\|CDD\|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family	Back alignment and domain information

>gnl\|CDD\|213354 cd11744, MIT_CorA-like, metal ion transporter CorA-like divalent cation transporter superfamily	Back alignment and domain information

>gnl\|CDD\|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family	Back alignment and domain information

>gnl\|CDD\|213363 cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1p-like subfamily	Back alignment and domain information

>gnl\|CDD\|213360 cd12826, EcCorA_ZntB-like_u1, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		443
PRK09546		324	zntB zinc transporter; Reviewed	100.0
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	100.0
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	100.0
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	100.0
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	100.0
KOG2662		414	consensus Magnesium transporters: CorA family [Ino	98.88
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	90.39
COG3462		117	Predicted membrane protein [Function unknown]	88.09

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

Probab=100.00  E-value=8.7e-53  Score=424.27  Aligned_cols=301  Identities=24%  Similarity=0.353  Sum_probs=251.7

Q ss_pred             CCCceeeEEEEEcCCCceeeeccccccCCCCceeEEEecCCChhhhhHHHHHHHHHhcCChhhHHHhhhccCCCceeEEE
Q 035978           37 FPGMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGYV  116 (443)
Q Consensus        37 ~~~~i~~~a~~~~g~g~~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~fl~pl~~ed~L~~~e~rpr~e~~  116 (443)
                      .+|++  ++|.++|.|+++.++++.. ..+++++|+|+..|+++|     .+++.+.++||.+++||+.+.++|||+|.|
T Consensus         8 ~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~Wi~l~~~~~~e-----~~~L~~~~~~~~~~~d~l~~~~~rpk~e~~   79 (324)
T PRK09546          8 VPDAV--YAWQLDGKGGVKPLEDNDV-IDEAHPCWLHLDYTHPDS-----AQWLATTPLLPDNVRDALAGESTRPRVSRL   79 (324)
T ss_pred             CCCcE--EEEEEcCCCCceeCCchhc-ccCCCCEEEEeCCCChhH-----HHHHHhcCCCCHHHHHHHhCCCCCCcEEEE
Confidence            36788  9999999998766555422 235678999999999876     467776568999999999876679999999


Q ss_pred             CCEEEEEEeCCCCC--CCc-eEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHH
Q 035978          117 DGALVFRVNSPGPA--SSN-FTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHV  193 (443)
Q Consensus       117 ~~~l~~~v~~~~~~--~~~-~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~  193 (443)
                      ++++|++++.+...  ... .+.+++|++++++|||+|+++.+.+                                +.+
T Consensus        80 ~~~~~iil~~~~~~~~~~~~~~~~l~~~l~~~~lITv~~~~~~~~--------------------------------~~~  127 (324)
T PRK09546         80 GEGTLITLRCINGNTDERPDQLVAMRVYITDRLIVSTRHRKVLAL--------------------------------DDV  127 (324)
T ss_pred             CCEEEEEEEeccCCCCCChhheEEEEEEEeCCEEEEEecCCcccH--------------------------------HHH
Confidence            99998876643221  111 2579999999999999999886542                                234


Q ss_pred             HHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------HHHHHHHHHHHhcCcc
Q 035978          194 LEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG-------GFALKKQMLEERRFPK  266 (443)
Q Consensus       194 ~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~-------~~~lrr~L~~lrR~~~  266 (443)
                      .+++.   .     +..+.++.++++.+++.++|+|.+.++++++++|++|++++.+       ++.+|+++..+||+  
T Consensus       128 ~~~~~---~-----~~~~~~~~~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~--  197 (324)
T PRK09546        128 VSDLQ---E-----GTGPTDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRY--  197 (324)
T ss_pred             HHHHH---h-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH--
Confidence            44442   1     1234568899999999999999999999999999999999753       46788999999988  


Q ss_pred             hhhhhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978          267 MHLNLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLS  346 (443)
Q Consensus       267 ll~~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS  346 (443)
                        +.++|  +++.++..  .+..+++++++.+++|+.+|+.++.++++.++++++.+.+.|.+.+++++|++||+||++|
T Consensus       198 --l~p~~--~~l~~L~~--~~~~~~~~~~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt  271 (324)
T PRK09546        198 --MAPQR--DVFARLAS--ERLPWMSDDDRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYTMSLMA  271 (324)
T ss_pred             --HHHHH--HHHHHHHh--cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              67777  77888874  3456788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035978          347 IALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCF  396 (443)
Q Consensus       347 ~IflP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f  396 (443)
                      +||+|||||||||||||++||  |++|+ ||||+++++|++++++++++|
T Consensus       272 ~IflPlT~IaGiyGMNf~~mP--el~~~-~gy~~~l~im~~i~~~~~~~f  318 (324)
T PRK09546        272 MVFLPTTFLTGLFGVNLGGIP--GGGWP-FGFSIFCLLLVVLIGGVAWWL  318 (324)
T ss_pred             HHHHHHHHHHhhhccccCCCC--CcCCc-chHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999  77999 999999999999988776555

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3462 Predicted membrane protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		443
3ck6_A		252	Putative membrane transport protein; APC91421.1, Z	7e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3nvo_A		264	Zinc transport protein ZNTB; alpha-beta-alpha sand	2e-07
2iub_A		363	CORA, divalent cation transport-related protein; m	3e-07

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A* Length = 252	Back alignment and structure

 Score = 67.3 bits (164), Expect = 7e-13
 Identities = 43/302 (14%), Positives = 86/302 (28%), Gaps = 65/302 (21%)

Query: 45  AYIFDGHGKYYIKEWDLTDGI--GNEFSWYHVELPKGSQKLAQSAQYLIDVLCPPLKLQD 102
            ++ +            T          WYH E             +L D   P   +  
Sbjct: 5   GFMIEHWDFSTPMATQETTTAEHIQPNHWYHCERLH-----PDIRGWLEDNHVPRATVDH 59

Query: 103 ILSLVSNGPFCGYVDGAL--VFR-VNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLG 159
           +L+  S   F    D     + R +N    AS      I       ++I+          
Sbjct: 60  LLADESRPSFHPLDDDNFMLILRGINMNENASPEDMLSIRILYFQGALISTRKI------ 113

Query: 160 FSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVV 219
                        ++   R    E  G                        PKSL++L+ 
Sbjct: 114 ----------PSRAIMEIRQALAEHKG------------------------PKSLASLLN 139

Query: 220 HIVDTHVDHLQDVVTKLEIELDSVELELDKGG--FALKKQMLEERRF--PKMHLNLQRLL 275
            I++     +   +  +E  L+  ++  +      A +K ++  +RF  P     ++ L+
Sbjct: 140 QIIEGLNGKIDLYLDTIEETLNEFDVNDESTYNHIAAQKALISIKRFIRP-QQYAIRDLI 198

Query: 276 QYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQI 335
                      S+    +   +        + R+ E + F    V   Q  +   + E+ 
Sbjct: 199 ----------ESESELVTSRPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKT 248

Query: 336 NR 337
           N+
Sbjct: 249 NK 250

PyMOL of 3ck6

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A Length = 264	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Length = 363	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		443
4ev6_A		339	Magnesium transport protein CORA; membrane protein	100.0
2iub_A		363	CORA, divalent cation transport-related protein; m	100.0
4egw_A		280	Magnesium transport protein CORA; magnesium transp	100.0
3nvo_A		264	Zinc transport protein ZNTB; alpha-beta-alpha sand	100.0
3ck6_A		252	Putative membrane transport protein; APC91421.1, Z	100.0
2bbh_A		269	Divalent cation transport-related protein; transpo	99.95
2hn1_A		266	CORA, magnesium and cobalt transporter; integral m	99.94
2iub_A		363	CORA, divalent cation transport-related protein; m	88.92
4ev6_A		339	Magnesium transport protein CORA; membrane protein	86.01

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

Probab=100.00  E-value=1.3e-53  Score=431.34  Aligned_cols=303  Identities=18%  Similarity=0.207  Sum_probs=245.9

Q ss_pred             CceeeEEEEEcCCCceeeeccccccCCCCceeEEEecCCChhhhhHHHHHHHHHhc-CChhhHHHhhhccCCCceeEEEC
Q 035978           39 GMVRKKAYIFDGHGKYYIKEWDLTDGIGNEFSWYHVELPKGSQKLAQSAQYLIDVL-CPPLKLQDILSLVSNGPFCGYVD  117 (443)
Q Consensus        39 ~~i~~~a~~~~g~g~~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l~pl~~ed~L~~~e~rpr~e~~~  117 (443)
                      .||..++|.-||.=  .....+.-...+.+++|||+.+|+++|     +++|++.| +||++++|+++. ++|||+|.++
T Consensus        22 ~~i~~~~~~~d~~~--~~~~l~~~~~~d~~~vWIdl~~Pt~~E-----~~~l~~~~~l~~~~~ed~l~~-~~rpk~e~~~   93 (339)
T 4ev6_A           22 SMITVIAIAKDGSI--VEPKLDEISFEDYRLIWIDCYDPKDEE-----LYKLSKKIGISVSDLQIGLDE-QEIPRVEEDE   93 (339)
T ss_dssp             ---CCSSEEEEESS--SCCBCCSCCCSSCSCEEEEEESCCHHH-----HHHHHHHHTCCHHHHHHHHCT-TCCCEEEEET
T ss_pred             cceEEEEEcCCCCc--ccCchhhhhccCCCEEEEEeCCCCHHH-----HHHHHHHHCcCHhHHHHhhCC-ccCCeEEEEC
Confidence            37877777766432  222333112245679999999999987     58999999 999999999998 5699999999


Q ss_pred             CEEEEEEeCCCCCCCceEEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCcccccCCCCCCCCCchhHHHHHHHHH
Q 035978          118 GALVFRVNSPGPASSNFTFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIPSVENHRGEPKEGSGIVIREHVLEFL  197 (443)
Q Consensus       118 ~~l~~~v~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l  197 (443)
                      +++|++++.+..+++..+.+++|++++++|||||+++.+.+                                +.+.+++
T Consensus        94 ~~~~iv~~~~~~~~~~~~~~v~i~l~~~~lITv~~~~~~~~--------------------------------~~~~~~~  141 (339)
T 4ev6_A           94 DFYLIIYKAPLFEEDITTTSLGIYIKNNLLLTIHSDKIKAI--------------------------------GRLHKLI  141 (339)
T ss_dssp             TEEEEECCCCCCTTTCCCCCCEEEEETTEEEEEESSCCHHH--------------------------------HHHHHHS
T ss_pred             CEEEEEEecCccCCCcceEEEEEEEECCeeEEeecCCcchh--------------------------------HHHHHHH
Confidence            99988766543332222568999999999999999876432                                2233333


Q ss_pred             HhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHHHhcCcchhh
Q 035978          198 LTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG--------GFALKKQMLEERRFPKMHL  269 (443)
Q Consensus       198 ~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~--------~~~lrr~L~~lrR~~~ll~  269 (443)
                         ..... ......++.++++.++|.++|.|+++++.++++++++|++++.+        +..+|+++..+||+    +
T Consensus       142 ---~~~~~-~~~~~~~~~~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~----l  213 (339)
T 4ev6_A          142 ---STKKP-RIVFERGIGFLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKS----L  213 (339)
T ss_dssp             ---SSSSS-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH----H
T ss_pred             ---HcCCC-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH----h
Confidence               11111 11235689999999999999999999999999999999999864        46788999999998    6


Q ss_pred             hhHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035978          270 NLQRLLQYFRESKERCSSKHWFSSDDINALEELTGRLRRLKENVGFITNRVTAIQAGLDSWQAEQINRKLYYLSFLSIAL  349 (443)
Q Consensus       270 ~~~rll~~l~~L~~~~~~~~~l~~e~~~~l~dv~d~~~~l~e~l~~l~e~l~~L~d~~~s~~s~q~N~iMk~LTiiS~If  349 (443)
                      .++|  +++..+.+  ....+++++++.+++|+.+|+.++.++++.++++++.+.+++.+.+++++|++||+||++|+||
T Consensus       214 ~~~~--~vl~~L~~--~~~~~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~If  289 (339)
T 4ev6_A          214 IANR--DVLVLLKR--KYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIF  289 (339)
T ss_dssp             HHHH--HHHHHHHH--SCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhhH--HHHHHHhh--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777  77788764  4566778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035978          350 LPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVLLCF  396 (443)
Q Consensus       350 lP~T~IaGiyGMNf~~mP~~el~~~~yGy~~~l~lm~~i~~~~~~~f  396 (443)
                      +|||||||+|||||++||  +++|+ ||||+++++|++++++++++|
T Consensus       290 lP~T~IaGiyGMNf~~mP--el~~~-~gy~~~l~~m~~~~~~~~~~f  333 (339)
T 4ev6_A          290 AVPMWITGIYGMNFSYLP--LANNP-QGFWLVMALMVVIIMIFVYIF  333 (339)
T ss_dssp             SHHHHHHHHTTCCCSCCT--TSSCT-THHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCcCCCCC--CccCc-hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999  77999 999999999999888766554

PyMOL of 4ev6

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A	Back alignment and structure

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*	Back alignment and structure

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1	Back alignment and structure

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		443
d2iuba2		64	f.17.3.1 (A:286-349) Magnesium transport protein C	2e-08

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 334 QINRKLYYLSFLSIALLPLSIITGVFGMNVGGVPWTLQEEPKDGFRNVVFLCVAMLLLVL 393
           + N  +  L+ ++   +PL+ I G++GMN   +P       K G+  V+ +   + ++++
Sbjct: 1   KTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPEL---RWKWGYPVVLAVMGVIAVIMV 57

Query: 394 LCF 396
           + F
Sbjct: 58  VYF 60

PyMOL of d2iuba2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		443
d2bbha1		232	Magnesium transport protein CorA, soluble domain {	99.9
d2iuba2		64	Magnesium transport protein CorA {Thermotoga marit	99.8

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: CorA soluble domain-like
superfamily: CorA soluble domain-like
family: CorA soluble domain-like
domain: Magnesium transport protein CorA, soluble domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.8e-22  Score=190.11  Aligned_cols=207  Identities=15%  Similarity=0.160  Sum_probs=149.5

Q ss_pred             CCCCCCccCCCCCCCCCCceeeEEEEEcCCCceeeec---cc-ccc-CCCCceeEEEecCCChhhhhHHHHHHHHHhc-C
Q 035978           22 PGEPSFRKSHVYRHHFPGMVRKKAYIFDGHGKYYIKE---WD-LTD-GIGNEFSWYHVELPKGSQKLAQSAQYLIDVL-C   95 (443)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~g~g~~~~~~---~~-~~~-~~~~~~~Wi~l~~p~~~e~~~~~~~~l~~~f-l   95 (443)
                      ||.-.++..+    +.+-.|  .++.|+.++. ....   .+ ... ...++++|||+.+|++.|.    +++|.+.| +
T Consensus         2 pg~l~~~~~~----~~~~~i--~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~Widi~~~~~~e~----l~~l~~~f~i   70 (232)
T d2bbha1           2 PGTLVYTGKY----REDFEI--EVMNYSIEEF-REFKTTDVESVLPFRDSSTPTWINITGIHRTDV----VQRVGEFFGT   70 (232)
T ss_dssp             TTCCCCCSSC----CSCCEE--EEEEEETTEE-EEEEESCGGGTGGGGGCSSCEEEEEECTTCHHH----HHHHHHHHTC
T ss_pred             CCCccCCCCC----CCCcEE--EEEEecCCCc-eecccCCHHHHHhccCCCCcEEEEeCCCCCHHH----HHHHHHHcCc
Confidence            5655544443    224456  5556665543 2222   22 211 2457789999999987552    58899999 9


Q ss_pred             ChhhHHHhhhccCCCceeEEECCEEEEEEeC--CCCCCCce-EEEEEEEEeCCEEEEEEeCCCCCCCCCcCcccccccCc
Q 035978           96 PPLKLQDILSLVSNGPFCGYVDGALVFRVNS--PGPASSNF-TFRIAARITDNSVITVSLGRVPRLGFSPMGQSLLSEIP  172 (443)
Q Consensus        96 ~pl~~ed~L~~~e~rpr~e~~~~~l~~~v~~--~~~~~~~~-~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~l~~~~~  172 (443)
                      ||++++||++. ++|||+|.|++++|++++.  ...+...+ +.+++|++++++|||+|+++.+.+              
T Consensus        71 ~~l~led~l~~-~~rpk~e~~~~~~fiil~~~~~~~~~~~~~~~~l~i~l~~~~lITv~~~~~~~~--------------  135 (232)
T d2bbha1          71 HPLVLEDILNV-HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLILTKNCVLMFQEKIGDVF--------------  135 (232)
T ss_dssp             CHHHHHHHHCT-TCCCEEEECSSEEEEEEEEEECCC--CCCEEEEEEEEEETTEEEEEESSSCCSC--------------
T ss_pred             CHhHHHHHhCc-ccCCceEEeCCEEEEEEEeecccCCCCcceeEEEEEEEECCEEEEEecCCCchH--------------
Confidence            99999999999 4699999999999986553  22222223 679999999999999999887543              


Q ss_pred             ccccCCCCCCCCCchhHHHHHHHHHHhhcCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 035978          173 SVENHRGEPKEGSGIVIREHVLEFLLTMNHSEEADNPVPKSLSNLVVHIVDTHVDHLQDVVTKLEIELDSVELELDKG--  250 (443)
Q Consensus       173 ~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ll~~lLd~ivd~y~~~l~~l~~~ld~LE~~v~~~--  250 (443)
                                        +.+.+++.   ...  ......++++++|.+++.++|+|+++++.+++++|++|+.++.+  
T Consensus       136 ------------------~~v~~~~~---~~~--~~~~~~~~~~ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~  192 (232)
T d2bbha1         136 ------------------DPVRERIR---YNR--GIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE  192 (232)
T ss_dssp             ------------------HHHHHHHH---TTC--TTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             ------------------HHHHHHHH---hCc--cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence                              23444542   111  11123689999999999999999999999999999999999864  


Q ss_pred             ------HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHh
Q 035978          251 ------GFALKKQMLEERRFPKMHLNLQRLLQYFRESKE  283 (443)
Q Consensus       251 ------~~~lrr~L~~lrR~~~ll~~~~rll~~l~~L~~  283 (443)
                            ++.+|+++..+||+    +.++|  +++.+|.+
T Consensus       193 ~~~l~~i~~lrr~l~~lrr~----l~p~r--evl~~L~r  225 (232)
T d2bbha1         193 KETVQRTHQLKRNLVELRKT----IWPLR--EVLSSLYR  225 (232)
T ss_dssp             --CHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHhc
Confidence                  57899999999999    78888  88888864

PyMOL of d2bbha1

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure