Citrus Sinensis ID: 036007

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
SSSLAVISLALTKFSFLPVIFHQPNSLNKFSQKQNLQKTKTHFSKFILFVESTSTQMLLQTQSLTLHFLPPLIPFKPIAKPQFIPCKQIPFRKLALKCSVSTVSCPTTHVGISNDKPFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY
ccccccHHEHHccccccEEEEcccccccHHHHHHHHHHHccccccEEEEEEccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEcccccccccccEEcEEEcccccEEEEEcccccccccccccEEEEEEccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHcc
ccHHHHHHHHHHHHccccEEEEccccccHccHHHHHHcccccccEEEEEEEccccHHHHHHHHccHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEccccccccEEEEEEEccccccEEEEccccHHcccccccEEEEEcccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEEcccccccEEEcHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHccc
SSSLAVISLALTkfsflpvifhqpnslnkfsqkqnlqkTKTHFSKFILFVESTSTQMLLQTQsltlhflpplipfkpiakpqfipckqipfrklALKCsvstvscptthvgisndkpfpaeaSRTIMELSsigtlsmltsegcplgvgvrfavddegspvlcvsdsckelsvdkksslhvqldqcgsrtpqctiqgvldkpkdrMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMedfaedgiwvsssdyrnaspdpLRHFAEKIVNEINLNNMEDVYRFCNIY
SSSLAVISLALTKFSFLPVIFHQPNSLNKFSQKQNLQKTKTHFSKFILFVESTSTQMLLQTQSLTLHFLPPLIPFKPIAKPQFIPCKQIPFRKLALKCSVSTVscptthvgisndkpfPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHvqldqcgsrtpqctiqgvldkpkdrmISKRLLSMWKrrfgedvneELIYVVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNeinlnnmedvyrFCNIY
SSSLAVISLALTKFSFLPVIFHQPNSLNKFSQKQNLQKTKTHFSKFILFVEststqmllqtqsltlHFLPPLIPFKPIAKPQFIPCKQIPFRKLALKCSVSTVSCPTTHVGISNDKPFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY
****AVISLALTKFSFLPVIFHQPNSLNKF*****LQKTKTHFSKFILFVESTSTQMLLQTQSLTLHFLPPLIPFKPIAKPQFIPCKQIPFRKLALKCSVSTVSCPTTHVGISND********RTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVD****LHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRN****PLRHFAEKIVNEINLNNMEDVYRFCNI*
***LAVISLALTKFSFLPVIFHQPNS**************THFSKFILFVESTSTQMLLQTQSLTLHFLP**************************************************EASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY
SSSLAVISLALTKFSFLPVIFHQPNSLNKFSQKQNLQKTKTHFSKFILFVESTSTQMLLQTQSLTLHFLPPLIPFKPIAKPQFIPCKQIPFRKLALKCSVSTVSCPTTHVGISNDKPFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY
**SLAVISLALTKFSFLPVIFHQPNSLNKFSQKQNLQKTKTHFSKFILFVESTSTQMLLQTQSLTLHFLPPLIPFKPIAKPQFIPCKQI*F*KLALKCSV***************KPFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
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SSSLAVISLALTKFSFLPVIFHQPNSLNKFSQKQNLQKTKTHFSKFILFVESTSTQMLLQTQSLTLHFLPPLIPFKPIAKPQFIPCKQIPFRKLALKCSVSTVSCPTTHVGISNDKPFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
224113295322 predicted protein [Populus trichocarpa] 0.804 0.717 0.700 7e-86
225443292324 PREDICTED: uncharacterized protein LOC10 0.808 0.716 0.639 6e-81
298204792318 unnamed protein product [Vitis vinifera] 0.801 0.723 0.641 3e-80
18402922317 proton gradient regulation 7 [Arabidopsi 0.783 0.709 0.616 7e-77
297830820314 hypothetical protein ARALYDRAFT_898561 [ 0.783 0.716 0.616 1e-76
21593452317 unknown [Arabidopsis thaliana] 0.783 0.709 0.612 2e-76
449432392320 PREDICTED: uncharacterized protein LOC10 0.794 0.712 0.605 6e-76
255568049236 conserved hypothetical protein [Ricinus 0.777 0.944 0.604 8e-73
316936734320 glutamyl-tRNA reductase binding protein 0.738 0.662 0.589 2e-67
316936736320 glutamyl-tRNA reductase binding protein 0.749 0.671 0.578 1e-65
>gi|224113295|ref|XP_002316448.1| predicted protein [Populus trichocarpa] gi|222865488|gb|EEF02619.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 166/237 (70%), Positives = 190/237 (80%), Gaps = 6/237 (2%)

Query: 57  MLLQTQSLTLHF-LPPLIPFKPIA-KP-QFIPCKQ-IPFRKLALKCSVSTVSC-PTTHV- 110
           M LQTQSLT +  LP L   KP   KP QF P KQ  PF + +LKCS+STVS  P THV 
Sbjct: 1   MHLQTQSLTTNLPLPSLFLPKPTTTKPHQFTPLKQQKPFPQFSLKCSLSTVSAEPPTHVV 60

Query: 111 GISNDKPFPAEASRTIMELSSIGTLSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKEL 170
           G SNDKPFPAE SRTIMELSS+GTLS LT +G PL VGVRFAVDD+G+P+LC+SDS ++ 
Sbjct: 61  GSSNDKPFPAEISRTIMELSSVGTLSTLTPDGWPLSVGVRFAVDDDGTPILCLSDSHRQF 120

Query: 171 SVDKKSSLHVQLDQCGSRTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVV 230
           SVD++SSLHVQL+Q G RTPQCTIQG LDKP+D  + KR  SMWK+RFGE+V +ELIYVV
Sbjct: 121 SVDRRSSLHVQLEQSGMRTPQCTIQGSLDKPEDTKLLKRAHSMWKKRFGEEVKDELIYVV 180

Query: 231 AVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY 287
           A+ERVLQMEDF EDG+WVSSSDY+NASPDPLR FAE   NEIN  NMEDV RFCN+Y
Sbjct: 181 AMERVLQMEDFVEDGVWVSSSDYKNASPDPLRDFAEAFANEINNKNMEDVSRFCNVY 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225443292|ref|XP_002274572.1| PREDICTED: uncharacterized protein LOC100260424 [Vitis vinifera] Back     alignment and taxonomy information
>gi|298204792|emb|CBI25290.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18402922|ref|NP_566678.1| proton gradient regulation 7 [Arabidopsis thaliana] gi|9280221|dbj|BAB01711.1| unnamed protein product [Arabidopsis thaliana] gi|17065156|gb|AAL32732.1| Unknown protein [Arabidopsis thaliana] gi|27311937|gb|AAO00934.1| Unknown protein [Arabidopsis thaliana] gi|332642954|gb|AEE76475.1| proton gradient regulation 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830820|ref|XP_002883292.1| hypothetical protein ARALYDRAFT_898561 [Arabidopsis lyrata subsp. lyrata] gi|297329132|gb|EFH59551.1| hypothetical protein ARALYDRAFT_898561 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21593452|gb|AAM65419.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449432392|ref|XP_004133983.1| PREDICTED: uncharacterized protein LOC101210647 [Cucumis sativus] gi|449487540|ref|XP_004157677.1| PREDICTED: uncharacterized protein LOC101224538 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255568049|ref|XP_002525001.1| conserved hypothetical protein [Ricinus communis] gi|223535709|gb|EEF37373.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|316936734|gb|ADU60361.1| glutamyl-tRNA reductase binding protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|316936736|gb|ADU60362.1| glutamyl-tRNA reductase binding protein [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2094741317 PGR7 "AT3G21200" [Arabidopsis 0.717 0.649 0.633 3.8e-69
TAIR|locus:2079394321 AT3G03890 [Arabidopsis thalian 0.560 0.501 0.279 5.1e-06
TAIR|locus:2094741 PGR7 "AT3G21200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 135/213 (63%), Positives = 169/213 (79%)

Query:    76 KPIAKPQFIPCKQIPFRKLALKCSVST-VSCPTTHVGISNDKPFPAEASRTIMELSSIGT 134
             KPI + +FI  K+ P R ++L+CSVST +  P T    S  KPFPAE SR+IMELSS+GT
Sbjct:    20 KPIERREFISLKRDPSRPISLRCSVSTTLDTPAT---ASTHKPFPAEVSRSIMELSSVGT 76

Query:   135 LSMLTSEGCPLGVGVRFAVDDEGSPVLCVSDSCKELSVDKKSSLHVQLDQCGSRTPQCTI 194
             LS LT +G PLGVGVRFAVD +G+PVLC++ S   +S DK+S+LHVQL+QCG RTPQCTI
Sbjct:    77 LSTLTHDGWPLGVGVRFAVDKDGTPVLCLNRS---VSPDKRSALHVQLEQCGLRTPQCTI 133

Query:   195 QGVLDKPKDRMISKRLLSMWKRRFGEDVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYR 254
             QG + +P D  + KRL + W+ +FGE+V E+ +YVVAV+RVLQMEDF EDGIWV+SSDY+
Sbjct:   134 QGSIGRPGDDTVLKRLSATWREKFGEEVKEDSLYVVAVDRVLQMEDFMEDGIWVASSDYK 193

Query:   255 NASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY 287
             NASPDPLR  AE IVN+IN NNMED++RFCN+Y
Sbjct:   194 NASPDPLRDIAEDIVNQINANNMEDIFRFCNVY 226
GO:0009507 "chloroplast" evidence=IDA
GO:0009767 "photosynthetic electron transport chain" evidence=IMP
GO:0009791 "post-embryonic development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP
GO:0043495 "protein anchor" evidence=IDA
GO:0070455 "positive regulation of heme biosynthetic process" evidence=IMP
TAIR|locus:2079394 AT3G03890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X2166
hypothetical protein (322 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 99.95
KOG3374210 consensus Cellular repressor of transcription [Tra 99.64
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.45
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.33
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.29
PRK03467144 hypothetical protein; Provisional 99.29
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.27
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.21
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.2
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 98.96
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 98.6
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 98.48
COG0748245 HugZ Putative heme iron utilization protein [Inorg 98.45
COG3871145 Uncharacterized stress protein (general stress pro 98.44
PRK06733151 hypothetical protein; Provisional 98.23
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 98.07
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 97.95
PF1061583 DUF2470: Protein of unknown function (DUF2470); In 97.93
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 97.75
COG3787145 Uncharacterized protein conserved in bacteria [Fun 97.62
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 97.47
KOG2586228 consensus Pyridoxamine-phosphate oxidase [Coenzyme 96.76
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 96.56
PF04299169 FMN_bind_2: Putative FMN-binding domain; InterPro: 95.99
COG5015132 Uncharacterized conserved protein [Function unknow 95.95
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 95.19
COG3576173 Predicted flavin-nucleotide-binding protein struct 94.75
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 94.32
COG2808209 PaiB Transcriptional regulator [Transcription] 87.86
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information 
Probab=99.95  E-value=2.7e-28  Score=212.39  Aligned_cols=138  Identities=26%  Similarity=0.455  Sum_probs=99.6

Q ss_pred             CCCCcHHHHHHHHhcCCeEEEEeeCC----CCeeeeeeeeEE----EcCCCcEEEEeCCcc---chhccCCCeEEEEeeC
Q 036007          115 DKPFPAEASRTIMELSSIGTLSMLTS----EGCPLGVGVRFA----VDDEGSPVLCVSDSC---KELSVDKKSSLHVQLD  183 (287)
Q Consensus       115 ~rPs~AE~ARtLL~~~~~gtLATls~----DG~P~~S~V~ya----~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~  183 (287)
                      ++...|+.||+|++..++|+|+|++.    +|.|+++++.|+    .+.+|+|+|+++.++   +||++||||||+|.+.
T Consensus         2 ~~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~   81 (170)
T PF13883_consen    2 TREEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEP   81 (170)
T ss_dssp             -TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGG
T ss_pred             ChHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecC
Confidence            56788999999999999999999998    899999999999    777999999999999   9999999999999987


Q ss_pred             C---------CCC--cCCeEEEEEEEEccCChHHHHHHHHHHHhhcCC-----CC---CCeeEEEEEEeEEEEeeccccc
Q 036007          184 Q---------CGS--RTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGE-----DV---NEELIYVVAVERVLQMEDFAED  244 (287)
Q Consensus       184 ~---------~pl--a~~RVTL~G~a~~V~dee~~~~l~a~~~ar~g~-----~~---~df~l~RL~pe~V~~vgGFG~a  244 (287)
                      +         +++  +++||||.|++++|++++. +.+.+.|.++|++     +.   +||.||||+|++|+||||||++
T Consensus        82 ~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~-~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~  160 (170)
T PF13883_consen   82 QGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEA-AAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGA  160 (170)
T ss_dssp             GSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTH-HHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS-
T ss_pred             CCCcccccCCCCCCCCCcEEEEEEEEEEcCchHH-HHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCc
Confidence            3         233  7899999999999986543 3345555555543     45   8999999999999999999999


Q ss_pred             CcccChhccc
Q 036007          245 GIWVSSSDYR  254 (287)
Q Consensus       245 ~~~V~~edy~  254 (287)
                      + ||+.|||.
T Consensus       161 ~-~i~~~~Y~  169 (170)
T PF13883_consen  161 A-WISAEEYY  169 (170)
T ss_dssp             E-EE-HHHHH
T ss_pred             e-EeCHHHhc
Confidence            7 99999996

>KOG3374 consensus Cellular repressor of transcription [Transcription] Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [] Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG2808 PaiB Transcriptional regulator [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 7e-15
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 1e-10
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 1e-10
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 7e-04
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258 Back     alignment and structure
 Score = 71.9 bits (175), Expect = 7e-15
 Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 12/178 (6%)

Query: 119 PAEASRTIMELSSIGTLSMLTS-EGCPLGVGVRFAVDDEGSPVLCVSD---SCKELSVDK 174
               +R ++  S    L+ L    G P        ++ +G+P    +      + +  D 
Sbjct: 28  AVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDA 87

Query: 175 KSSLHVQLDQCGS--RTPQCTIQGVLDKPKD----RMISKRLLSMWKRRFGEDVNEELIY 228
           + S+ +     G     P+ T+ G  D+         I++ +    K +    + +  +Y
Sbjct: 88  RISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLY 147

Query: 229 VVAVERVLQMEDFAEDGIWVSSSDYRNASPDPL--RHFAEKIVNEINLNNMEDVYRFC 284
            +  E V      A +   ++ +D R            AE     +N    E      
Sbjct: 148 RLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAV 205
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Length = 157 Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Length = 184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 100.0
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 100.0
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 99.95
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 99.93
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 99.93
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.91
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.86
2hq7_A146 Protein, related to general stress protein 26(GS2 99.6
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.58
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.57
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.55
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.55
2re7_A134 Uncharacterized protein; general stress protein CO 99.52
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.52
2fhq_A141 Putative general stress protein; alpha-beta struct 99.52
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.51
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.51
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.38
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.37
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.37
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.35
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.33
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.32
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.31
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.29
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.27
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.27
2qea_A160 Putative general stress protein 26; structural gen 99.26
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.24
2hti_A185 BH0577 protein; structural genomics, joint center 99.22
2fur_A209 Hypothetical protein; structural genomics, joint c 99.07
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.06
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.06
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 98.97
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 98.89
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 98.79
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 98.71
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 98.57
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 98.57
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 98.51
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 98.45
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 98.42
3in6_A148 FMN-binding protein; structural genomics, joint ce 98.21
3a6r_A122 FMN-binding protein; electron transport, flavoprot 97.86
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 97.48
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 95.58
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 95.53
3r5z_A145 Putative uncharacterized protein; split barrel-lik 95.51
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
Probab=100.00  E-value=6e-37  Score=280.36  Aligned_cols=170  Identities=15%  Similarity=0.232  Sum_probs=149.4

Q ss_pred             CCCCCcHHHHHHHHhcCCeEEEEeeC-CCCeeeeeeeeEEEcCCCcEEEEeCCcc---chhccCCCeEEEEeeCC--CCC
Q 036007          114 NDKPFPAEASRTIMELSSIGTLSMLT-SEGCPLGVGVRFAVDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQ--CGS  187 (287)
Q Consensus       114 ~~rPs~AE~ARtLL~~~~~gtLATls-~DG~P~~S~V~ya~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~--~pl  187 (287)
                      ++....++.+|+||+++++|+|||++ .||+|++|+|+|++|++|+++|+++..+   +||++||||||+|.+++  +++
T Consensus        23 p~~~~~~~~ar~lL~~~~~g~LaTv~~~dG~P~~s~v~y~~d~~g~~~~~~s~~~~h~~NL~~dprvSl~V~~~~~~d~~  102 (258)
T 3dnh_A           23 GAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDAL  102 (258)
T ss_dssp             ---CCHHHHHHHHHHHCCEEEEEEECTTTCCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEECCGGGSCGG
T ss_pred             CCCHHHHHHHHHHHHhCCEEEEEeccCCCCceEEEEEEEEECCCCCEEEEEeCCcHHHHHHhhCCCEEEEEecCCCCChh
Confidence            34456789999999999999999999 8999999999999998899999999988   99999999999999874  567


Q ss_pred             cCCeEEEEEEEEccCChHHHHHHHHHHHhhcCC-----CCCCeeEEEEEEeEEEEeecccc-cCcccChhcccc--CCCC
Q 036007          188 RTPQCTIQGVLDKPKDRMISKRLLSMWKRRFGE-----DVNEELIYVVAVERVLQMEDFAE-DGIWVSSSDYRN--ASPD  259 (287)
Q Consensus       188 a~~RVTL~G~a~~V~dee~~~~l~a~~~ar~g~-----~~~df~l~RL~pe~V~~vgGFG~-a~~~V~~edy~~--A~PD  259 (287)
                      ..+||+|+|+++.+++++ .+.+.+.|.++|++     +.+||.||||+|++++|++|||+ ++ ||+++||.+  |.||
T Consensus       103 ~~~rvtl~G~a~~v~~~e-~~~l~~~y~~rhP~a~~~~~~~df~l~rl~~~~v~~v~GFG~~a~-~v~~~d~~~~~a~~d  180 (258)
T 3dnh_A          103 TLPRLTLVGRADRIGPDE-VPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNAS-NITPADLRTDLSGAE  180 (258)
T ss_dssp             GSCEEEEEEEEEECCGGG-HHHHHHHHHHHCTTHHHHTSSTTEEEEEEEEEEEEEEC------C-CCCHHHHSCCCTTCH
T ss_pred             hCCeEEEEEEEEEcCchH-HHHHHHHHHHHCcChHHcccCCCeEEEEEEEeEEEEEcccCcccc-cCCHHHhcccCCCCc
Confidence            789999999999998875 35667777788874     56899999999999999999999 98 999999999  8999


Q ss_pred             cchhhhHHHHHHHhhcCHHHHHHHHhhC
Q 036007          260 PLRHFAEKIVNEINLNNMEDVYRFCNIY  287 (287)
Q Consensus       260 PL~~~e~~ll~HLN~dH~e~v~~~~~~y  287 (287)
                      ||++.|+.||+|||+|| |++.+||+ |
T Consensus       181 ~l~~~~~~ii~hmN~dH-d~l~~~~~-~  206 (258)
T 3dnh_A          181 ELMAAAESEATRLNAIK-GEASRLAV-L  206 (258)
T ss_dssp             HHHHHHHHHHHHHHTST-THHHHHHH-H
T ss_pred             hhHHHHHHHHHHHHhhH-HHHHHHHH-h
Confidence            99999999999999999 99999998 5
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d2arza1238 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps 5e-15
d1xhna1170 b.45.1.1 (A:13-182) Cellular repressor of E1A-stim 3e-05
d1vl7a_135 b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob 0.004
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 70.5 bits (172), Expect = 5e-15
 Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 13/179 (7%)

Query: 120 AEASRTIMELSSIGTLSMLT--SEGCPLGVGVRFAVDDEGSPVLCVSD---SCKELSVDK 174
           A+ +R ++       LS  +    G P G  V + +D EG P++ +S        L  D 
Sbjct: 5   AKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADP 64

Query: 175 KSSLHVQLDQCGSR-TPQCTIQGVLDKPKDRMISKRLLSMWKRRFGEDVNEEL-----IY 228
           + S+ V                    +             + R F E  +         +
Sbjct: 65  RCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFW 124

Query: 229 VVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFAEKIVNEINLNNMEDVYRFCNIY 287
           V+   +   +  F        +++    +          +V  +N ++   +  +  + 
Sbjct: 125 VLQPVQWRFIGGFGAIHWL--AAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVELA 181
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d2arza1238 Hypothetical protein PA4388 {Pseudomonas aeruginos 100.0
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 99.96
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 99.91
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.59
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.56
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.54
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.52
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.51
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.44
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.44
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.43
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.26
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 99.11
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 98.9
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 98.89
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 97.66
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 97.5
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 97.42
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 97.39
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 97.08
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=4.2e-36  Score=269.14  Aligned_cols=167  Identities=17%  Similarity=0.250  Sum_probs=149.0

Q ss_pred             CcHHHHHHHHhcCCeEEEEeeCCC--CeeeeeeeeEEEcCCCcEEEEeCCcc---chhccCCCeEEEEeeCC--CCCcCC
Q 036007          118 FPAEASRTIMELSSIGTLSMLTSE--GCPLGVGVRFAVDDEGSPVLCVSDSC---KELSVDKKSSLHVQLDQ--CGSRTP  190 (287)
Q Consensus       118 s~AE~ARtLL~~~~~gtLATls~D--G~P~~S~V~ya~d~dG~piLlvS~~a---rNL~~dPRaSL~V~~~~--~pla~~  190 (287)
                      ..|+.||+||++.++|+|||++.+  |+|++|.|+|+.|++|+|+|++|.++   +||+.||||||+|.+++  ++...+
T Consensus         3 e~a~~aR~ll~~~~~~~LsT~~~~~~G~P~~S~v~~a~d~~G~p~~~~S~la~Ht~NL~~d~rvSL~v~~~~~~~~~~~~   82 (238)
T d2arza1           3 EAAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVG   82 (238)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECSSSTTCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEEECTTCSSTTSSC
T ss_pred             HHHHHHHHHHhhCCeEEEEecCCCCCCCceEEEEEEEECCCCCEEEEEecchHhhHhhhcCCcEEEEEEcCCcccccccc
Confidence            468999999999999999999865  99999999999999999999999998   99999999999998875  567789


Q ss_pred             eEEEEEEEEccCChHHHHHHHHHHHhhcCC-----CCCCeeEEEEEEeEEEEeecccccCcccChhccccCCCCcchhhh
Q 036007          191 QCTIQGVLDKPKDRMISKRLLSMWKRRFGE-----DVNEELIYVVAVERVLQMEDFAEDGIWVSSSDYRNASPDPLRHFA  265 (287)
Q Consensus       191 RVTL~G~a~~V~dee~~~~l~a~~~ar~g~-----~~~df~l~RL~pe~V~~vgGFG~a~~~V~~edy~~A~PDPL~~~e  265 (287)
                      |+++.|.++++++++. +.+.+.|.++++.     +++||.||||+|++++||+|||+++ ||+++||..+.||+ ...|
T Consensus        83 R~tl~g~~~~~~~~e~-~~~~~~~~~rhP~~~~~~~~~Df~~~~l~~~~~~~V~GFG~a~-~i~~~~~~~~~~~~-~~~~  159 (238)
T d2arza1          83 RLTLLAEARQLAEEEV-AAAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGFGAIH-WLAAERVPLANPFA-GEAE  159 (238)
T ss_dssp             EEEEEEEEEECCHHHH-HHHHHHHHHHCGGGTTCBTTBBEEEEEEEEEEEEEECTTCCEE-EEETTTSCCCCTTT-THHH
T ss_pred             ceeeeeeeEecCchHH-HHHHHHHHHhccchhhhcccCcEEEEEEeeeEEEEEcCCCccc-cccHHHhhhccchh-hhhh
Confidence            9999999999987654 4556666677664     5689999999999999999999998 99999998776654 6778


Q ss_pred             HHHHHHHhhcCHHHHHHHHhhC
Q 036007          266 EKIVNEINLNNMEDVYRFCNIY  287 (287)
Q Consensus       266 ~~ll~HLN~dH~e~v~~~~~~y  287 (287)
                      +.+|+|||+||.|++..+|+.|
T Consensus       160 ~~ii~hmN~dH~d~l~~~~~~~  181 (238)
T d2arza1         160 RGMVEHMNSDHAAAIAHYVELA  181 (238)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHhhcchhhHHHHHHHHHHh
Confidence            9999999999999999999865
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure