Citrus Sinensis ID: 036031


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-
MQRRRRRVVVLLRKMLTCAICVIALVALLSVHVHVPVFPSFKVPDFADPYKLPTITQQHEIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKPPSNRDFVPCVEPSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKSLSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPLPDCLCRRQPLNVNTSLTIK
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHccEEEcccccccccccccccccccccHHHHHHHccccEEEEccccHHHHHcccccccccccccHHHHHHHHHHHHHHHcEEEEccccHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHHcccccccHHHHHHHHHHHcccccccEEEEEcEEcccccccHHHHHHcccccccccccccccccccccccccccHHcEEEEEcccEEEEcccccHHHHHHHHHHHcccccEEcccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccEEEEEcccccccccccEccccccccccccccccHHcccccccccccHHHHcccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccHHHHccHHHHHHHHHHHcEEHHcccHHHcccccccccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHcccccHHHHHHEEHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEEcccEEEEccccccccHHHHHHHHHHHHHcccccEEEEccHHHHHcccccccHHHHHHHHHHcccccccEEEEEEcEEccccHHHHHHHHHccccccccccccHHHHHHccccHHHHHHHHHHEEccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHcccccccccEccccccccccEEcc
MQRRRRRVVVLLRKMLTCAICVIALVALLSVHvhvpvfpsfkvpdfadpyklptitqqHEIKYQILSTeqswteelapphlsqtplpsrkldvtggnsnsnivklwkppsnrdfvpcvepssnytspaeprgyllvhtngglnqmrAGICDMVAVARIINATlvvpeldkrsfwqdssnfsdvfdedhfINSLANDVKVIKKVPKELSTAARAVKHFrswsgmdyyeGEIASMWEDYQIIRAAKsdsrlannnlpldIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMlafsgcthdlspveadELRTIRENTVHWKVKeidskeqrskgycpltpkEVGIFLTalgypsstpiyiaageiyggdarmadlqtrypimmskeklasveelepcvnhaSQMAALDYIVSVEsdvfipsysgnmARAVEGHRRFlghrktispdRKALVRLFDKIelgtiregkslSNKVIEIHKkrqgsprkrkgpisgtkgmdrfrseeafyvnplpdclcrrqplnvntsltik
MQRRRRRVVVLLRKMLTCAICVIALVALLSVHVHVPVFPSFKVPDFADPYKLPTITQQHEIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSnivklwkppsnrDFVPCVEPSsnytspaepRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAaravkhfrswsgMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLspveadelrtirentvhwkvkeidskeqrskgycplTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFlghrktispdrkaLVRLFDKielgtiregkslsnkvieihkkrqgsprkrkgpisgtkgmdrfrSEEAFYVnplpdclcrrqplnvntsltik
MQrrrrrvvvllrKMLTCAICvialvallsvhvhvpvFPSFKVPDFADPYKLPTITQQHEIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKPPSNRDFVPCVEPSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKSLSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPLPDCLCRRQPLNVNTSLTIK
******RVVVLLRKMLTCAICVIALVALLSVHVHVPVFPSFKVPDFADPYKLPTITQQHEIKYQILSTE********************************IVKLW*******FVPC*************RGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEID******KGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIRE***************************************AFYVNPLPDCLCRRQPL*********
*********VLLRKMLTCAICVIALVALLSVHVHVPVFPS*****************************************************************WKPPSNRDFV****************GYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPK**************WSGMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTH*********LRTIRENTVH***************YCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKSLSNKVIE**************************SEEAFYVNPLPDC****************
********VVLLRKMLTCAICVIALVALLSVHVHVPVFPSFKVPDFADPYKLPTITQQHEIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKPPSNRDFVPCVEPSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKSLSNKVIEIH***************GTKGMDRFRSEEAFYVNPLPDCLCRRQPLNVNTSLTIK
****RRRVVVLLRKMLTCAICVIALVALLSVHVHVPVFPSFKVPDFADPYKLPTITQQHEIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKPPSNRDFVPCVEPSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKSLSNKVIEIHKKRQGSPRK*******TKGMD**RSEEAFYVNPLPDCLCRRQ***********
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQRRRRRVVVLLRKMLTCAICVIALVALLSVHVHVPVFPSFKVPDFADPYKLPTITQQHEIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKPPSNRDFVPCVEPSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKSLSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPLPDCLCRRQPLNVNTSLTIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query541 2.2.26 [Sep-21-2011]
Q8W486519 Uncharacterized protein A no no 0.768 0.801 0.373 7e-76
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  285 bits (728), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 165/442 (37%), Positives = 245/442 (55%), Gaps = 26/442 (5%)

Query: 98  SNSNIVKLWKPPSNRDFVPCVEPSSNYTSPA-EPRGYLLVHTNGGLNQMRAGICDMVAVA 156
           S  N+ +LW+   +  + P   P S++  P  E  GYL V  NGGLNQ R+ IC+ V  A
Sbjct: 55  SKINVEELWESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAA 114

Query: 157 RIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPK-ELSTAARAVK 215
           RI+NATLV+PELD  SFW D S F  ++D +HFI +L  DVK++ K+P    +   + +K
Sbjct: 115 RIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIK 174

Query: 216 HFR----SWSGMDYYEGEIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALR 271
            F+      + +++Y         ++  I       RLA      + Q+LRCR  Y ALR
Sbjct: 175 AFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALR 234

Query: 272 FAPQIEAMGKLLVDRMRSYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVH 331
           F P I  + + +VD++RS G ++++HLR+E DMLAF+GC    +P E   LR  R+   +
Sbjct: 235 FKPHIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKE--N 292

Query: 332 WKVKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRY 391
           +  K +   E+R+ G CPLTP+EVG+ L A+ + +ST IY+AAGE++GG+  M   +T +
Sbjct: 293 FADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLF 352

Query: 392 PIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSG--NMARAVEGHRRFL 449
           P + +   +   EEL    +     +A+DY+V + SD+F+P+Y G  N A  + GHR + 
Sbjct: 353 PRLDNHSSVDPSEELS-ATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYY 411

Query: 450 GHRKTISPDRKALVRLFDKIELGTIREGKSLSNKVIEIHKKRQGSPRKRKGPISGTKGMD 509
           G R TI PDRKAL  +F   E G  R G   + + + + K   G P KR  P        
Sbjct: 412 GFRTTIRPDRKALAPIFIAREKGK-RAGFEEAVRRVML-KTNFGGPHKRVSP-------- 461

Query: 510 RFRSEEAFYVNPLPDCLCRRQP 531
                E+FY N  P+C C+  P
Sbjct: 462 -----ESFYTNSWPECFCQMNP 478





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query541
225459219 730 PREDICTED: DUF246 domain-containing prot 0.968 0.717 0.827 0.0
302141996536 unnamed protein product [Vitis vinifera] 0.987 0.996 0.813 0.0
255545806536 conserved hypothetical protein [Ricinus 0.961 0.970 0.790 0.0
449469833534 PREDICTED: DUF246 domain-containing prot 0.955 0.968 0.784 0.0
449497054530 PREDICTED: DUF246 domain-containing prot 0.975 0.996 0.726 0.0
356552922525 PREDICTED: DUF246 domain-containing prot 0.953 0.982 0.728 0.0
356500719514 PREDICTED: DUF246 domain-containing prot 0.948 0.998 0.724 0.0
449437298522 PREDICTED: DUF246 domain-containing prot 0.961 0.996 0.714 0.0
357489755552 DUF246 domain-containing protein [Medica 0.964 0.945 0.676 0.0
147804836513 hypothetical protein VITISV_036923 [Viti 0.837 0.883 0.813 0.0
>gi|225459219|ref|XP_002284058.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/532 (82%), Positives = 485/532 (91%), Gaps = 8/532 (1%)

Query: 1   MQRRRR-RVVVLLRKMLTCAICVIALVALLSVHVHVPVFPSFKVPDFADPYKLPTITQQH 59
           MQ+R R R +V+LR++L  AIC IA VALLSVHVH+  F S KVPDF+D YKLPT   QH
Sbjct: 1   MQKRSRWRGLVVLRRLLIGAICSIAAVALLSVHVHI--FLSSKVPDFSDSYKLPT---QH 55

Query: 60  EIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKPPSNRDFVPCVE 119
           EI +Q LSTE+ W +ELAPPHLS+ PLPSRKLD  G +   ++ KLWKPP NRDFVPCV+
Sbjct: 56  EIGFQRLSTERKWVQELAPPHLSKAPLPSRKLD--GASGILDLDKLWKPPQNRDFVPCVD 113

Query: 120 PSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSN 179
           P +NYTSPAE +GYLLVHTNGGLNQMRAGICDMVAVARIINATLV+PELDKRSFWQDSSN
Sbjct: 114 PGANYTSPAESQGYLLVHTNGGLNQMRAGICDMVAVARIINATLVIPELDKRSFWQDSSN 173

Query: 180 FSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEGEIASMWEDYQI 239
           FSDVFDEDHFI++LA DVKVIKK+PKEL+TA RAVKHFRSWSG+DYY+ EIASMW DYQ+
Sbjct: 174 FSDVFDEDHFISALAYDVKVIKKLPKELATAPRAVKHFRSWSGIDYYQNEIASMWADYQV 233

Query: 240 IRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLR 299
           IRAAKSDSRLANNNL  DIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLR
Sbjct: 234 IRAAKSDSRLANNNLLPDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLR 293

Query: 300 YEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFL 359
           YEKDMLAFSGCTHDLSP EA+ELR IRENT +WKVK IDS+EQR+KGYCPLTPKEVGIFL
Sbjct: 294 YEKDMLAFSGCTHDLSPAEAEELRMIRENTAYWKVKGIDSREQRAKGYCPLTPKEVGIFL 353

Query: 360 TALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAAL 419
            ALGYPSSTPIYIAAGEIYGGD+ MADLQ+RYPI+MSKEKLAS++ELEP  NHASQMAAL
Sbjct: 354 MALGYPSSTPIYIAAGEIYGGDSHMADLQSRYPILMSKEKLASIDELEPFANHASQMAAL 413

Query: 420 DYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKS 479
           DYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALV LFDKIE G+++EGK+
Sbjct: 414 DYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVHLFDKIERGSLKEGKN 473

Query: 480 LSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPLPDCLCRRQP 531
           LSNK++E+H+KRQGSPRKRKGPISGTKGMDRFRSEEAFYVNP+PDCLC ++P
Sbjct: 474 LSNKIMELHRKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPIPDCLCHKEP 525




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141996|emb|CBI19199.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255545806|ref|XP_002513963.1| conserved hypothetical protein [Ricinus communis] gi|223547049|gb|EEF48546.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449469833|ref|XP_004152623.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449503909|ref|XP_004162223.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449497054|ref|XP_004160299.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356552922|ref|XP_003544811.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|356500719|ref|XP_003519179.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|449437298|ref|XP_004136429.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357489755|ref|XP_003615165.1| DUF246 domain-containing protein [Medicago truncatula] gi|355516500|gb|AES98123.1| DUF246 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|147804836|emb|CAN71444.1| hypothetical protein VITISV_036923 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query541
TAIR|locus:2009467565 AT1G22460 [Arabidopsis thalian 0.885 0.847 0.697 1.2e-188
TAIR|locus:2174754522 AT5G64600 [Arabidopsis thalian 0.822 0.852 0.605 7.1e-148
TAIR|locus:2065563638 AT2G37980 [Arabidopsis thalian 0.776 0.658 0.495 5.5e-109
TAIR|locus:2080285638 AT3G54100 [Arabidopsis thalian 0.774 0.656 0.490 1.3e-107
TAIR|locus:2157096652 AT5G35570 [Arabidopsis thalian 0.787 0.653 0.479 1.6e-104
TAIR|locus:2150129631 FRB1 "FRIABLE 1" [Arabidopsis 0.780 0.668 0.473 7.7e-103
TAIR|locus:2014869499 AT1G14020 [Arabidopsis thalian 0.737 0.799 0.487 2.7e-100
TAIR|locus:2076552512 AT3G02250 [Arabidopsis thalian 0.715 0.755 0.493 3.4e-100
TAIR|locus:2143181508 AT5G15740 [Arabidopsis thalian 0.730 0.777 0.492 5.6e-100
TAIR|locus:2056981508 AT2G03280 [Arabidopsis thalian 0.669 0.712 0.457 8.8e-96
TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1804 (640.1 bits), Expect = 1.2e-188, Sum P(2) = 1.2e-188
 Identities = 337/483 (69%), Positives = 408/483 (84%)

Query:    51 KLPTIT--QQHEIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKP 108
             ++P I+  + +EI+YQ   +E     EL PPH+S +P  S KL++T G  + +  KLWK 
Sbjct:    81 EIPLISNPKTNEIQYQSSISEHINNTELVPPHVSTSPSSSSKLNITSGIPDFD--KLWKH 138

Query:   109 PSNRDFVPCVEPSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPEL 168
             P NR+FVPCV P+ +YTSP E RGYLLVHTNGGLNQMRAGICDMVA+ARIINATLVVPEL
Sbjct:   139 PPNRNFVPCVSPNPSYTSPLESRGYLLVHTNGGLNQMRAGICDMVAIARIINATLVVPEL 198

Query:   169 DKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEG 228
             DKRSFWQD+S FSDVFDEDHFIN+L+ D++VIKK+PK +    + VKHF+S+SG+ YY+ 
Sbjct:   199 DKRSFWQDTSKFSDVFDEDHFINALSKDIRVIKKLPKGIDGLTKVVKHFKSYSGLSYYQN 258

Query:   229 EIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMR 288
             EIASMW++Y++IRAAKSDSRLANNNLP DIQKLRCRACYEALRF+ +I +MG+LLVDRMR
Sbjct:   259 EIASMWDEYKVIRAAKSDSRLANNNLPPDIQKLRCRACYEALRFSTKIRSMGELLVDRMR 318

Query:   289 SYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYC 348
             SYG YIALHLR+EK+MLAFSGC H LS  EA ELR IR+NT +WKVK+ID + QR KGYC
Sbjct:   319 SYGLYIALHLRFEKEMLAFSGCNHGLSASEAAELRRIRKNTAYWKVKDIDGRVQRLKGYC 378

Query:   349 PLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEP 408
             PLTPKEVGI LTALGY S TP+YIAAGEIYGG++R+ADL++R+ ++MSKEKLA+ EEL+ 
Sbjct:   379 PLTPKEVGILLTALGYSSDTPVYIAAGEIYGGESRLADLRSRFSMLMSKEKLATREELKT 438

Query:   409 CVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDK 468
              +NH++QMAALDYIVS+ESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKA+VRL D+
Sbjct:   439 FMNHSTQMAALDYIVSIESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKAIVRLVDR 498

Query:   469 IELGTIREGKSLSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPLPDCLCR 528
             I  G  ++ + +  ++ EIHK RQGSPR+RKGP SGTKG++R RSEE+FY NPLPDCLC+
Sbjct:   499 IGRGAEKDNRKVYERINEIHKTRQGSPRRRKGPASGTKGLERHRSEESFYENPLPDCLCQ 558

Query:   529 RQP 531
             R P
Sbjct:   559 RDP 561


GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150129 FRB1 "FRIABLE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056981 AT2G03280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00015184001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (536 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 1e-163
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 1e-118
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 3e-10
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information
 Score =  465 bits (1200), Expect = e-163
 Identities = 173/325 (53%), Positives = 221/325 (68%), Gaps = 38/325 (11%)

Query: 133 YLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINS 192
           YLLV  NGGLNQ R+ ICD VAVAR++NATLV+PELDK S W DSS F D++D DHFI S
Sbjct: 1   YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60

Query: 193 LANDVKVIKKVPKELSTAAR--AVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSDSRLA 250
           L +DV+V+KK+P+EL++      VK   S S   YY  E+  + + + +IR A  DSRLA
Sbjct: 61  LKDDVRVVKKLPEELASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLA 120

Query: 251 NNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRS-YGPYIALHLRYEKDMLAFSG 309
           N+ LP +IQ+LRCR  + ALRF P+IE +G  LVDR+R   GP++ALHLR+EKDMLAFSG
Sbjct: 121 NDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSG 180

Query: 310 CTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTP 369
           C                                   G CPLTP+EVG+ L ALG+P ST 
Sbjct: 181 C-----------------------------------GKCPLTPEEVGLLLRALGFPRSTR 205

Query: 370 IYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDV 429
           IY+AAGEIYGG+ R+  L++ +P + +KE LA+ EEL P   H+S++AALDYIV +ESDV
Sbjct: 206 IYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDV 265

Query: 430 FIPSYSGNMARAVEGHRRFLGHRKT 454
           F+P+Y GN A+AV GHRR+LGHRKT
Sbjct: 266 FVPTYGGNFAKAVAGHRRYLGHRKT 290


Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 541
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
KOG3849386 consensus GDP-fucose protein O-fucosyltransferase 97.92
PF05830321 NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 96.89
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information
Probab=100.00  E-value=2e-56  Score=451.30  Aligned_cols=296  Identities=35%  Similarity=0.606  Sum_probs=208.8

Q ss_pred             ecCchhhHHHHHHHHHHHHHHhcCeEEeecccCCcccCCCCC-----CCcccchHHHHHhccccceEeccCchhhhhhhh
Q 036031          138 TNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSN-----FSDVFDEDHFINSLANDVKVIKKVPKELSTAAR  212 (541)
Q Consensus       138 ~nGGLNQqR~~IcdaVavAriLNATLVlP~L~~~s~W~D~S~-----F~dIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~  212 (541)
                      +.||+||||.++++||++|++||+|||||.+...+.|++.+.     |+++||+++|++.++.+|.+.+.+|........
T Consensus         6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~   85 (351)
T PF10250_consen    6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR   85 (351)
T ss_dssp             -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence            889999999999999999999999999999999999999887     999999999999999999999998866544211


Q ss_pred             ------------------------------hcc-ccc-cccCccchhhhhhcccccc------cEEEEeecCCcccCCCC
Q 036031          213 ------------------------------AVK-HFR-SWSGMDYYEGEIASMWEDY------QIIRAAKSDSRLANNNL  254 (541)
Q Consensus       213 ------------------------------~~k-~~~-~ws~~~yy~~~ilP~l~k~------~VI~l~~~~~rLa~~~l  254 (541)
                                                    ..+ ... .|+.+.+|.++++|.+.++      +++.|.++...+.++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  165 (351)
T PF10250_consen   86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL  165 (351)
T ss_dssp             EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred             hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence                                          111 112 2678888888899999886      99999999999998888


Q ss_pred             ChhhhhhhhhhccccccccHHHHHHHHHHHHHHh-hcCCeeEeeccchhhhhhhcCCCCCCChhhHHHHHHHHhcccccc
Q 036031          255 PLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMR-SYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWK  333 (541)
Q Consensus       255 P~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLr-~~G~fiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk  333 (541)
                      +.++||        +|+|+++|+++|++++++|+ ..++|||+|||+|+||  +++|.+++   +...|+.+|.    |.
T Consensus       166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~----~~  228 (351)
T PF10250_consen  166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRC----WG  228 (351)
T ss_dssp             GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHH----H-
T ss_pred             CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHh----hc
Confidence            899987        99999999999999999999 7789999999999999  88899955   6677777775    24


Q ss_pred             cccCChHhhhcCCCCCCCHHHHHHHHHhcCCCCCccEEEeeccccCCcccchhHHHhcCCccccccCCCcccccccccch
Q 036031          334 VKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHA  413 (541)
Q Consensus       334 ~k~i~~~~~R~~G~CPLTPeEvgl~LralGf~~~T~IYlA~GeiyGG~~~l~pLr~~FPnl~tKe~L~s~eEL~pf~~~s  413 (541)
                      .+.+.+...+..+.||++|++++.+++++|+.+.|.||||++++|||.+.|++|++.||++++|+++.+.+|+++|..  
T Consensus       229 ~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--  306 (351)
T PF10250_consen  229 KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--  306 (351)
T ss_dssp             GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------
T ss_pred             cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--
Confidence            456778888999999999999999999999999999999999999999999999999999999999999999999876  


Q ss_pred             hhhhhhheeeecCCceeeeCCCCchhhhhhHhhhhcCCC
Q 036031          414 SQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHR  452 (541)
Q Consensus       414 s~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~  452 (541)
                      .++|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus       307 ~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  307 DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP  345 (351)
T ss_dssp             S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred             cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence            999999999999999999999889999999999999965



Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 61/420 (14%), Positives = 114/420 (27%), Gaps = 131/420 (31%)

Query: 137 HTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLAN- 195
           H +    + +    D+++V         V   D            DV  +D   + L+  
Sbjct: 6   HMDFETGEHQYQYKDILSV----FEDAFVDNFD----------CKDV--QDMPKSILSKE 49

Query: 196 DVKVIKKVPKE-----------LSTAARAVKHF-RSWSGMDYYEGEIASMWEDYQIIRAA 243
           ++  I                 LS     V+ F      ++Y    + S  +  Q   + 
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSM 107

Query: 244 KSD------SRLANNNLPLD---------IQKLRCRACYEALRFAPQIEAMGKLLVDRMR 288
            +        RL N+N               KLR     +AL    ++     +L+D + 
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-----QALL---ELRPAKNVLIDGVL 159

Query: 289 SYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYC 348
             G          K  +A   C        + +++   +  + W    ++ K   S    
Sbjct: 160 GSG----------KTWVALDVC-------LSYKVQCKMDFKIFW----LNLKNCNS---- 194

Query: 349 PLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEP 408
              P+ V   L  L Y         +        R+  +Q          +L   +  E 
Sbjct: 195 ---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE------LRRLLKSKPYEN 245

Query: 409 C------VNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKAL 462
           C      V +A    A +    +   + + +    +   +           ++      L
Sbjct: 246 CLLVLLNVQNAKAWNAFN----LSCKILLTTRFKQVTDFLSAATTT---HISLDHHSMTL 298

Query: 463 VRLFDKIELGTIREGKSLSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPL 522
                     T  E KSL  K ++   + Q  PR                  E    NP 
Sbjct: 299 ----------TPDEVKSLLLKYLDC--RPQDLPR------------------EVLTTNPR 328


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query541
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 99.56
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 99.27
2de0_X526 Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran 97.86
2hhc_A330 NODZ, nodulation fucosyltransferase NODZ; glycosyl 97.73
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=99.56  E-value=1.3e-14  Score=150.47  Aligned_cols=295  Identities=18%  Similarity=0.260  Sum_probs=168.7

Q ss_pred             CCCCCceEEEEec-C-chhhHHHHHHHHHHHHHHhcCe----EEeecccCCcccCCC------CCCCcccchHHHHHhcc
Q 036031          127 PAEPRGYLLVHTN-G-GLNQMRAGICDMVAVARIINAT----LVVPELDKRSFWQDS------SNFSDVFDEDHFINSLA  194 (541)
Q Consensus       127 ~~~snGyL~V~~n-G-GLNQqR~~IcdaVavAriLNAT----LVlP~L~~~s~W~D~------S~F~dIFDvdhFI~sL~  194 (541)
                      +...++||+-..| | |.|+||...-.|.++|+.||.|    ||||-...---|.-.      -+|+++||++++.    
T Consensus        18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----   93 (408)
T 4ap5_A           18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----   93 (408)
T ss_dssp             --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred             CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence            4578999999654 5 8999999999999999999999    999976533345322      3799999998753    


Q ss_pred             ccceEeccCchhhhhhh--hh---c---cc-ccc-----c-----------------cCccch-----------------
Q 036031          195 NDVKVIKKVPKELSTAA--RA---V---KH-FRS-----W-----------------SGMDYY-----------------  226 (541)
Q Consensus       195 ~dVrIVk~LP~~~~~~~--~~---~---k~-~~~-----w-----------------s~~~yy-----------------  226 (541)
                      ..|+|+.-  +++....  ..   +   +. ...     |                 ....++                 
T Consensus        94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c  171 (408)
T 4ap5_A           94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC  171 (408)
T ss_dssp             TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred             hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence            45566622  2211100  00   0   00 000     0                 000000                 


Q ss_pred             ------hhhhhcccccc---cEEEEeecCCcccCCCCChhhhhhhhhhccccccccHHHHHHHHHHHHHHhhcCCeeEee
Q 036031          227 ------EGEIASMWEDY---QIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALH  297 (541)
Q Consensus       227 ------~~~ilP~l~k~---~VI~l~~~~~rLa~~~lP~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLr~~G~fiALH  297 (541)
                            ...+.|.+.+.   .-+-+..+..-|+...-..+...+     ...|+|.+.|.++|+..++..- .++|+++|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~-----~r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h  245 (408)
T 4ap5_A          172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDT-----RRSMVFARHLREVGDEFRSRHL-NSTDDADR  245 (408)
T ss_dssp             EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHH-----HHTCCBCHHHHHHHHHHHHHHH-CCCTTTTT
T ss_pred             EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhH-----HHHhhhhHHHHHHHHHHHHHHh-Ccccceee
Confidence                  00011111111   111111111222211111122222     1369999999999999888665 36899999


Q ss_pred             ccchhhhhhhcCCCCCCChhhHHHHHHHHhcccccccccCChHhhhcCC-CCCCCHHHHHHHHHhcCCCCCccEEEeecc
Q 036031          298 LRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKG-YCPLTPKEVGIFLTALGYPSSTPIYIAAGE  376 (541)
Q Consensus       298 LR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G-~CPLTPeEvgl~LralGf~~~T~IYlA~Ge  376 (541)
                      +|...|+...  |.......-      --+.-.||+...    -..... .||-.++-+..+.+.|-=-+-+.||||+-+
T Consensus       246 ~r~~~dw~~~--~~~~~~~~~------~~y~~~H~Rr~d----~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~  313 (408)
T 4ap5_A          246 IPFQEDWMKM--KVKLGSALG------GPYLGVHLRRKD----FIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA  313 (408)
T ss_dssp             CCCCSSGGGC--CCCTTCBCC------EEEEEEEECCTT----TTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC
T ss_pred             cccchhHhhh--hcccccccC------CCcccccccccc----chhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            9999888764  443211000      000112332211    011112 233333333333333322244589999865


Q ss_pred             ccCCcccchhHHHhcCCccccccCCCcccccccccchhhhhhhheeeecCCceeeeCCCCchhhhhhHhhhhcCCC
Q 036031          377 IYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHR  452 (541)
Q Consensus       377 iyGG~~~l~pLr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~  452 (541)
                      .   ++.+..|++.+|.++.-..  ..+++..+  .....|.||-+||.+||+||+|..++|+..|.=.|.+.|+.
T Consensus       314 ~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~  382 (408)
T 4ap5_A          314 V---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLD  382 (408)
T ss_dssp             C---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred             c---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCC
Confidence            3   4457889999998763221  23344443  23467899999999999999999999999999999999976



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Back     alignment and structure
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00