Citrus Sinensis ID: 036031
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 541 | ||||||
| 225459219 | 730 | PREDICTED: DUF246 domain-containing prot | 0.968 | 0.717 | 0.827 | 0.0 | |
| 302141996 | 536 | unnamed protein product [Vitis vinifera] | 0.987 | 0.996 | 0.813 | 0.0 | |
| 255545806 | 536 | conserved hypothetical protein [Ricinus | 0.961 | 0.970 | 0.790 | 0.0 | |
| 449469833 | 534 | PREDICTED: DUF246 domain-containing prot | 0.955 | 0.968 | 0.784 | 0.0 | |
| 449497054 | 530 | PREDICTED: DUF246 domain-containing prot | 0.975 | 0.996 | 0.726 | 0.0 | |
| 356552922 | 525 | PREDICTED: DUF246 domain-containing prot | 0.953 | 0.982 | 0.728 | 0.0 | |
| 356500719 | 514 | PREDICTED: DUF246 domain-containing prot | 0.948 | 0.998 | 0.724 | 0.0 | |
| 449437298 | 522 | PREDICTED: DUF246 domain-containing prot | 0.961 | 0.996 | 0.714 | 0.0 | |
| 357489755 | 552 | DUF246 domain-containing protein [Medica | 0.964 | 0.945 | 0.676 | 0.0 | |
| 147804836 | 513 | hypothetical protein VITISV_036923 [Viti | 0.837 | 0.883 | 0.813 | 0.0 |
| >gi|225459219|ref|XP_002284058.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/532 (82%), Positives = 485/532 (91%), Gaps = 8/532 (1%)
Query: 1 MQRRRR-RVVVLLRKMLTCAICVIALVALLSVHVHVPVFPSFKVPDFADPYKLPTITQQH 59
MQ+R R R +V+LR++L AIC IA VALLSVHVH+ F S KVPDF+D YKLPT QH
Sbjct: 1 MQKRSRWRGLVVLRRLLIGAICSIAAVALLSVHVHI--FLSSKVPDFSDSYKLPT---QH 55
Query: 60 EIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKPPSNRDFVPCVE 119
EI +Q LSTE+ W +ELAPPHLS+ PLPSRKLD G + ++ KLWKPP NRDFVPCV+
Sbjct: 56 EIGFQRLSTERKWVQELAPPHLSKAPLPSRKLD--GASGILDLDKLWKPPQNRDFVPCVD 113
Query: 120 PSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSN 179
P +NYTSPAE +GYLLVHTNGGLNQMRAGICDMVAVARIINATLV+PELDKRSFWQDSSN
Sbjct: 114 PGANYTSPAESQGYLLVHTNGGLNQMRAGICDMVAVARIINATLVIPELDKRSFWQDSSN 173
Query: 180 FSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEGEIASMWEDYQI 239
FSDVFDEDHFI++LA DVKVIKK+PKEL+TA RAVKHFRSWSG+DYY+ EIASMW DYQ+
Sbjct: 174 FSDVFDEDHFISALAYDVKVIKKLPKELATAPRAVKHFRSWSGIDYYQNEIASMWADYQV 233
Query: 240 IRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLR 299
IRAAKSDSRLANNNL DIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLR
Sbjct: 234 IRAAKSDSRLANNNLLPDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALHLR 293
Query: 300 YEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFL 359
YEKDMLAFSGCTHDLSP EA+ELR IRENT +WKVK IDS+EQR+KGYCPLTPKEVGIFL
Sbjct: 294 YEKDMLAFSGCTHDLSPAEAEELRMIRENTAYWKVKGIDSREQRAKGYCPLTPKEVGIFL 353
Query: 360 TALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAAL 419
ALGYPSSTPIYIAAGEIYGGD+ MADLQ+RYPI+MSKEKLAS++ELEP NHASQMAAL
Sbjct: 354 MALGYPSSTPIYIAAGEIYGGDSHMADLQSRYPILMSKEKLASIDELEPFANHASQMAAL 413
Query: 420 DYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDKIELGTIREGKS 479
DYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALV LFDKIE G+++EGK+
Sbjct: 414 DYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVHLFDKIERGSLKEGKN 473
Query: 480 LSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPLPDCLCRRQP 531
LSNK++E+H+KRQGSPRKRKGPISGTKGMDRFRSEEAFYVNP+PDCLC ++P
Sbjct: 474 LSNKIMELHRKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPIPDCLCHKEP 525
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141996|emb|CBI19199.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255545806|ref|XP_002513963.1| conserved hypothetical protein [Ricinus communis] gi|223547049|gb|EEF48546.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449469833|ref|XP_004152623.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449503909|ref|XP_004162223.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449497054|ref|XP_004160299.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356552922|ref|XP_003544811.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356500719|ref|XP_003519179.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449437298|ref|XP_004136429.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357489755|ref|XP_003615165.1| DUF246 domain-containing protein [Medicago truncatula] gi|355516500|gb|AES98123.1| DUF246 domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|147804836|emb|CAN71444.1| hypothetical protein VITISV_036923 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 541 | ||||||
| TAIR|locus:2009467 | 565 | AT1G22460 [Arabidopsis thalian | 0.885 | 0.847 | 0.697 | 1.2e-188 | |
| TAIR|locus:2174754 | 522 | AT5G64600 [Arabidopsis thalian | 0.822 | 0.852 | 0.605 | 7.1e-148 | |
| TAIR|locus:2065563 | 638 | AT2G37980 [Arabidopsis thalian | 0.776 | 0.658 | 0.495 | 5.5e-109 | |
| TAIR|locus:2080285 | 638 | AT3G54100 [Arabidopsis thalian | 0.774 | 0.656 | 0.490 | 1.3e-107 | |
| TAIR|locus:2157096 | 652 | AT5G35570 [Arabidopsis thalian | 0.787 | 0.653 | 0.479 | 1.6e-104 | |
| TAIR|locus:2150129 | 631 | FRB1 "FRIABLE 1" [Arabidopsis | 0.780 | 0.668 | 0.473 | 7.7e-103 | |
| TAIR|locus:2014869 | 499 | AT1G14020 [Arabidopsis thalian | 0.737 | 0.799 | 0.487 | 2.7e-100 | |
| TAIR|locus:2076552 | 512 | AT3G02250 [Arabidopsis thalian | 0.715 | 0.755 | 0.493 | 3.4e-100 | |
| TAIR|locus:2143181 | 508 | AT5G15740 [Arabidopsis thalian | 0.730 | 0.777 | 0.492 | 5.6e-100 | |
| TAIR|locus:2056981 | 508 | AT2G03280 [Arabidopsis thalian | 0.669 | 0.712 | 0.457 | 8.8e-96 |
| TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1804 (640.1 bits), Expect = 1.2e-188, Sum P(2) = 1.2e-188
Identities = 337/483 (69%), Positives = 408/483 (84%)
Query: 51 KLPTIT--QQHEIKYQILSTEQSWTEELAPPHLSQTPLPSRKLDVTGGNSNSNIVKLWKP 108
++P I+ + +EI+YQ +E EL PPH+S +P S KL++T G + + KLWK
Sbjct: 81 EIPLISNPKTNEIQYQSSISEHINNTELVPPHVSTSPSSSSKLNITSGIPDFD--KLWKH 138
Query: 109 PSNRDFVPCVEPSSNYTSPAEPRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPEL 168
P NR+FVPCV P+ +YTSP E RGYLLVHTNGGLNQMRAGICDMVA+ARIINATLVVPEL
Sbjct: 139 PPNRNFVPCVSPNPSYTSPLESRGYLLVHTNGGLNQMRAGICDMVAIARIINATLVVPEL 198
Query: 169 DKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVPKELSTAARAVKHFRSWSGMDYYEG 228
DKRSFWQD+S FSDVFDEDHFIN+L+ D++VIKK+PK + + VKHF+S+SG+ YY+
Sbjct: 199 DKRSFWQDTSKFSDVFDEDHFINALSKDIRVIKKLPKGIDGLTKVVKHFKSYSGLSYYQN 258
Query: 229 EIASMWEDYQIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMR 288
EIASMW++Y++IRAAKSDSRLANNNLP DIQKLRCRACYEALRF+ +I +MG+LLVDRMR
Sbjct: 259 EIASMWDEYKVIRAAKSDSRLANNNLPPDIQKLRCRACYEALRFSTKIRSMGELLVDRMR 318
Query: 289 SYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYC 348
SYG YIALHLR+EK+MLAFSGC H LS EA ELR IR+NT +WKVK+ID + QR KGYC
Sbjct: 319 SYGLYIALHLRFEKEMLAFSGCNHGLSASEAAELRRIRKNTAYWKVKDIDGRVQRLKGYC 378
Query: 349 PLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEP 408
PLTPKEVGI LTALGY S TP+YIAAGEIYGG++R+ADL++R+ ++MSKEKLA+ EEL+
Sbjct: 379 PLTPKEVGILLTALGYSSDTPVYIAAGEIYGGESRLADLRSRFSMLMSKEKLATREELKT 438
Query: 409 CVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKALVRLFDK 468
+NH++QMAALDYIVS+ESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKA+VRL D+
Sbjct: 439 FMNHSTQMAALDYIVSIESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKAIVRLVDR 498
Query: 469 IELGTIREGKSLSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPLPDCLCR 528
I G ++ + + ++ EIHK RQGSPR+RKGP SGTKG++R RSEE+FY NPLPDCLC+
Sbjct: 499 IGRGAEKDNRKVYERINEIHKTRQGSPRRRKGPASGTKGLERHRSEESFYENPLPDCLCQ 558
Query: 529 RQP 531
R P
Sbjct: 559 RDP 561
|
|
| TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2150129 FRB1 "FRIABLE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2056981 AT2G03280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00015184001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (536 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 541 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-163 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-118 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 3e-10 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 465 bits (1200), Expect = e-163
Identities = 173/325 (53%), Positives = 221/325 (68%), Gaps = 38/325 (11%)
Query: 133 YLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINS 192
YLLV NGGLNQ R+ ICD VAVAR++NATLV+PELDK S W DSS F D++D DHFI S
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 193 LANDVKVIKKVPKELSTAAR--AVKHFRSWSGMDYYEGEIASMWEDYQIIRAAKSDSRLA 250
L +DV+V+KK+P+EL++ VK S S YY E+ + + + +IR A DSRLA
Sbjct: 61 LKDDVRVVKKLPEELASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLA 120
Query: 251 NNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRS-YGPYIALHLRYEKDMLAFSG 309
N+ LP +IQ+LRCR + ALRF P+IE +G LVDR+R GP++ALHLR+EKDMLAFSG
Sbjct: 121 NDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSG 180
Query: 310 CTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTP 369
C G CPLTP+EVG+ L ALG+P ST
Sbjct: 181 C-----------------------------------GKCPLTPEEVGLLLRALGFPRSTR 205
Query: 370 IYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDV 429
IY+AAGEIYGG+ R+ L++ +P + +KE LA+ EEL P H+S++AALDYIV +ESDV
Sbjct: 206 IYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDV 265
Query: 430 FIPSYSGNMARAVEGHRRFLGHRKT 454
F+P+Y GN A+AV GHRR+LGHRKT
Sbjct: 266 FVPTYGGNFAKAVAGHRRYLGHRKT 290
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 541 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 97.92 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 96.89 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=451.30 Aligned_cols=296 Identities=35% Similarity=0.606 Sum_probs=208.8
Q ss_pred ecCchhhHHHHHHHHHHHHHHhcCeEEeecccCCcccCCCCC-----CCcccchHHHHHhccccceEeccCchhhhhhhh
Q 036031 138 TNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSN-----FSDVFDEDHFINSLANDVKVIKKVPKELSTAAR 212 (541)
Q Consensus 138 ~nGGLNQqR~~IcdaVavAriLNATLVlP~L~~~s~W~D~S~-----F~dIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~ 212 (541)
+.||+||||.++++||++|++||+|||||.+...+.|++.+. |+++||+++|++.++.+|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999887 999999999999999999999998866544211
Q ss_pred ------------------------------hcc-ccc-cccCccchhhhhhcccccc------cEEEEeecCCcccCCCC
Q 036031 213 ------------------------------AVK-HFR-SWSGMDYYEGEIASMWEDY------QIIRAAKSDSRLANNNL 254 (541)
Q Consensus 213 ------------------------------~~k-~~~-~ws~~~yy~~~ilP~l~k~------~VI~l~~~~~rLa~~~l 254 (541)
..+ ... .|+.+.+|.++++|.+.++ +++.|.++...+.++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 111 112 2678888888899999886 99999999999998888
Q ss_pred ChhhhhhhhhhccccccccHHHHHHHHHHHHHHh-hcCCeeEeeccchhhhhhhcCCCCCCChhhHHHHHHHHhcccccc
Q 036031 255 PLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMR-SYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWK 333 (541)
Q Consensus 255 P~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLr-~~G~fiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk 333 (541)
+.++|| +|+|+++|+++|++++++|+ ..++|||+|||+|+|| +++|.+++ +...|+.+|. |.
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~----~~ 228 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRC----WG 228 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHH----H-
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHh----hc
Confidence 899987 99999999999999999999 7789999999999999 88899955 6677777775 24
Q ss_pred cccCChHhhhcCCCCCCCHHHHHHHHHhcCCCCCccEEEeeccccCCcccchhHHHhcCCccccccCCCcccccccccch
Q 036031 334 VKEIDSKEQRSKGYCPLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHA 413 (541)
Q Consensus 334 ~k~i~~~~~R~~G~CPLTPeEvgl~LralGf~~~T~IYlA~GeiyGG~~~l~pLr~~FPnl~tKe~L~s~eEL~pf~~~s 413 (541)
.+.+.+...+..+.||++|++++.+++++|+.+.|.||||++++|||.+.|++|++.||++++|+++.+.+|+++|..
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 306 (351)
T PF10250_consen 229 KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND-- 306 (351)
T ss_dssp GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------
T ss_pred cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--
Confidence 456778888999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhhheeeecCCceeeeCCCCchhhhhhHhhhhcCCC
Q 036031 414 SQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHR 452 (541)
Q Consensus 414 s~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~ 452 (541)
.++|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus 307 ~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 307 DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence 999999999999999999999889999999999999965
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 541 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 61/420 (14%), Positives = 114/420 (27%), Gaps = 131/420 (31%)
Query: 137 HTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLAN- 195
H + + + D+++V V D DV +D + L+
Sbjct: 6 HMDFETGEHQYQYKDILSV----FEDAFVDNFD----------CKDV--QDMPKSILSKE 49
Query: 196 DVKVIKKVPKE-----------LSTAARAVKHF-RSWSGMDYYEGEIASMWEDYQIIRAA 243
++ I LS V+ F ++Y + S + Q +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSM 107
Query: 244 KSD------SRLANNNLPLD---------IQKLRCRACYEALRFAPQIEAMGKLLVDRMR 288
+ RL N+N KLR +AL ++ +L+D +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-----QALL---ELRPAKNVLIDGVL 159
Query: 289 SYGPYIALHLRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKGYC 348
G K +A C + +++ + + W ++ K S
Sbjct: 160 GSG----------KTWVALDVC-------LSYKVQCKMDFKIFW----LNLKNCNS---- 194
Query: 349 PLTPKEVGIFLTALGYPSSTPIYIAAGEIYGGDARMADLQTRYPIMMSKEKLASVEELEP 408
P+ V L L Y + R+ +Q +L + E
Sbjct: 195 ---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE------LRRLLKSKPYEN 245
Query: 409 C------VNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKAL 462
C V +A A + + + + + + + ++ L
Sbjct: 246 CLLVLLNVQNAKAWNAFN----LSCKILLTTRFKQVTDFLSAATTT---HISLDHHSMTL 298
Query: 463 VRLFDKIELGTIREGKSLSNKVIEIHKKRQGSPRKRKGPISGTKGMDRFRSEEAFYVNPL 522
T E KSL K ++ + Q PR E NP
Sbjct: 299 ----------TPDEVKSLLLKYLDC--RPQDLPR------------------EVLTTNPR 328
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 541 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.56 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.27 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 97.86 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 97.73 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=150.47 Aligned_cols=295 Identities=18% Similarity=0.260 Sum_probs=168.7
Q ss_pred CCCCCceEEEEec-C-chhhHHHHHHHHHHHHHHhcCe----EEeecccCCcccCCC------CCCCcccchHHHHHhcc
Q 036031 127 PAEPRGYLLVHTN-G-GLNQMRAGICDMVAVARIINAT----LVVPELDKRSFWQDS------SNFSDVFDEDHFINSLA 194 (541)
Q Consensus 127 ~~~snGyL~V~~n-G-GLNQqR~~IcdaVavAriLNAT----LVlP~L~~~s~W~D~------S~F~dIFDvdhFI~sL~ 194 (541)
+...++||+-..| | |.|+||...-.|.++|+.||.| ||||-...---|.-. -+|+++||++++.
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~---- 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN---- 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence 4578999999654 5 8999999999999999999999 999976533345322 3799999998753
Q ss_pred ccceEeccCchhhhhhh--hh---c---cc-ccc-----c-----------------cCccch-----------------
Q 036031 195 NDVKVIKKVPKELSTAA--RA---V---KH-FRS-----W-----------------SGMDYY----------------- 226 (541)
Q Consensus 195 ~dVrIVk~LP~~~~~~~--~~---~---k~-~~~-----w-----------------s~~~yy----------------- 226 (541)
..|+|+.- +++.... .. + +. ... | ....++
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566622 2211100 00 0 00 000 0 000000
Q ss_pred ------hhhhhcccccc---cEEEEeecCCcccCCCCChhhhhhhhhhccccccccHHHHHHHHHHHHHHhhcCCeeEee
Q 036031 227 ------EGEIASMWEDY---QIIRAAKSDSRLANNNLPLDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYIALH 297 (541)
Q Consensus 227 ------~~~ilP~l~k~---~VI~l~~~~~rLa~~~lP~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLr~~G~fiALH 297 (541)
...+.|.+.+. .-+-+..+..-|+...-..+...+ ...|+|.+.|.++|+..++..- .++|+++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~-----~r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h 245 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDT-----RRSMVFARHLREVGDEFRSRHL-NSTDDADR 245 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHH-----HHTCCBCHHHHHHHHHHHHHHH-CCCTTTTT
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhH-----HHHhhhhHHHHHHHHHHHHHHh-Ccccceee
Confidence 00011111111 111111111222211111122222 1369999999999999888665 36899999
Q ss_pred ccchhhhhhhcCCCCCCChhhHHHHHHHHhcccccccccCChHhhhcCC-CCCCCHHHHHHHHHhcCCCCCccEEEeecc
Q 036031 298 LRYEKDMLAFSGCTHDLSPVEADELRTIRENTVHWKVKEIDSKEQRSKG-YCPLTPKEVGIFLTALGYPSSTPIYIAAGE 376 (541)
Q Consensus 298 LR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G-~CPLTPeEvgl~LralGf~~~T~IYlA~Ge 376 (541)
+|...|+... |.......- --+.-.||+... -..... .||-.++-+..+.+.|-=-+-+.||||+-+
T Consensus 246 ~r~~~dw~~~--~~~~~~~~~------~~y~~~H~Rr~d----~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~ 313 (408)
T 4ap5_A 246 IPFQEDWMKM--KVKLGSALG------GPYLGVHLRRKD----FIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA 313 (408)
T ss_dssp CCCCSSGGGC--CCCTTCBCC------EEEEEEEECCTT----TTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC
T ss_pred cccchhHhhh--hcccccccC------CCcccccccccc----chhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999888764 443211000 000112332211 011112 233333333333333322244589999865
Q ss_pred ccCCcccchhHHHhcCCccccccCCCcccccccccchhhhhhhheeeecCCceeeeCCCCchhhhhhHhhhhcCCC
Q 036031 377 IYGGDARMADLQTRYPIMMSKEKLASVEELEPCVNHASQMAALDYIVSVESDVFIPSYSGNMARAVEGHRRFLGHR 452 (541)
Q Consensus 377 iyGG~~~l~pLr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~ 452 (541)
. ++.+..|++.+|.++.-.. ..+++..+ .....|.||-+||.+||+||+|..++|+..|.=.|.+.|+.
T Consensus 314 ~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 314 V---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLD 382 (408)
T ss_dssp C---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred c---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCC
Confidence 3 4457889999998763221 23344443 23467899999999999999999999999999999999976
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00