Citrus Sinensis ID: 036049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
Protein Sequence
MLPLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLGRQQKATRRRRRRRN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEccccccEEEEEccccccEEEccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEccccccEEEccccccccccccEEEccccEEcccccHHHHccccccEEEcccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHcHHHHHccccccccccccccccccccccEEEEEEEEEEEEcccEEEccccccccEEEccccccccccHHHHHccccccccccccccccccccHHHHccccccHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEccccccEEEEEEccccccccccccHHHcccccccEEEccccccccccccHHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEccccccEEEcccccccccccHHHcccccccccccHccccccEEEEEccccccccccHHHHcccHcccEEEcccccccccccHcHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLPLCHDDERSALLQFKesrisgdfyawkfdcrptmaswkpeegnvdccswdgvhcnkntgHVVKLNLShsclfgsinssssLYKLVHLEWLNLAlndfnsseiqpeIINLSCSlklldlrscgfwgkvphsignFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSkcnfsgqitsSLRNLTELVVLDMAqnsyggtmeiEGKVHKwlldpnmqnlnalnlshnlltgfdqhlvllpgnneeprtgcgfsklriidlsdnrftgklpsksfLCWNAMKIVNASELRYLQdvlspsgkllmTTYDYLLTMNIKGRMMAYNKIPDILAGIIlsnksfdgaipasisnlkglqVLNLhnnnlqghipsclgnltnlesldlsnnkfsgripqqLVELTFLAFFNvsdnyltglipqgkqfatfdntsfdgnsglcgkplskgcesgeapsnedhtegseeslfsgasdWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLGRQQKATRRRRRRRN
Flexible Loop (DISEMBL)
MLPLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWileklgrqqkatrrrrrrrn
Low Complexity Region (SEG)
MLPLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQnlnalnlshnllTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKllmttydylltmNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKglqvlnlhnnnlqghIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEESLFSGASDWKiiligyagglvaglvlgFNFSTGIIGWILEKLGRQQKATrrrrrrrN
Disordered region (IsUnstruct)
************LLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLF*********YKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD***********************************GASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKL***************
Disordered Region (DISOPRED)
MLPLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV******YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPL**************************ASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLGRQQKA**RR*****
Disordered Region (DISEMBL)
MLPLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLS**********************FSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLG**************
Disordered Region (DISPRO)
*LPLCHDDERSALLQFKESRIS***********PTMASW*PEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGC********************SGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLGRQQKATRR******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLGRQQKATRRRRRRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	517	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.806	0.492	0.331	4e-45
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.752	0.533	0.283	1e-32
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.694	0.327	0.306	3e-32
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.624	0.320	0.344	9e-32
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.609	0.308	0.306	1e-30
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.644	0.321	0.315	1e-30
C0LGE4	882	Probable LRR receptor-lik	no	no	0.818	0.479	0.269	5e-30
Q00874	372	DNA-damage-repair/tolerat	no	no	0.657	0.913	0.271	5e-30
Q9LJM4	991	Receptor-like protein kin	no	no	0.603	0.314	0.314	5e-29
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.719	0.327	0.316	9e-29

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  182 bits (463), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 230/483 (47%), Gaps = 66/483 (13%)

Query: 65  KLNLSHSCLFGSINSS-SSLYKLVHLE--------------W----LNLALNDFNSSE-- 103
           +L++SH+   G+I  + S L  L+HL+              W    + L+ N F+S E  
Sbjct: 379 ELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENT 438

Query: 104 IQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR-S 162
            Q E +     ++ LDL S  F G +P+ I   + L FL L  N FSG +   I N   S
Sbjct: 439 SQEEAL-----IEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGS 493

Query: 163 LEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNAL 222
           ++ + +   NFSG +       TELV LD++ N      ++EGK  K L+  N + L  +
Sbjct: 494 IKELNLGDNNFSGTLPDIFSKATELVSLDVSHN------QLEGKFPKSLI--NCKALELV 545

Query: 223 NLSHNLLTG-FDQHLVLLP-------------GNNEEPRTGCGFSKLRIIDLSDNRFTGK 268
           N+  N +   F   L  LP             G         GF  LRIID+S N F+G 
Sbjct: 546 NVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGT 605

Query: 269 LPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDIL 328
           LP   F  W  M  +     +Y+ +           +Y + + M  KG  M++ +I    
Sbjct: 606 LPPYYFSNWKDMTTLTEEMDQYMTEFWR-----YADSYYHEMEMVNKGVDMSFERIRRDF 660

Query: 329 AGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 388
             I  S    +G IP S+  LK L+VLNL  N     IP  L NLT LE+LD+S NK SG
Sbjct: 661 RAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSG 720

Query: 389 RIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEA 448
           +IPQ L  L+FL++ N S N L G +P+G QF     +SF  N GL G  L   C    A
Sbjct: 721 QIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGA 778

Query: 449 --PSN---EDHTEGSEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLG 503
             P++   ED +E +EE++F    +W    I Y  G++ GLV+G  +++    W  EK G
Sbjct: 779 LNPTSQLPEDLSE-AEENMF----NWVAAAIAYGPGVLCGLVIGHFYTSHNHEWFTEKFG 833

Query: 504 RQQ 506
           R+Q
Sbjct: 834 RKQ 836

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 213/493 (43%), Gaps = 104/493 (21%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
           +++  + KL+ S++   G I  S  L + + L  L    N+  S  I  EI NLS  L+ 
Sbjct: 218 RSSPQLSKLDFSYNDFSGHI--SQELGRCLRLTVLQAGFNNL-SGVIPSEIYNLS-ELEQ 273

Query: 118 LDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI 177
           L L +    GK+ ++I    +L  L L  N+  G++   IGNL SL ++ +   N +G +
Sbjct: 274 LFLPANQLTGKIDNNITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTV 333

Query: 178 TSSLRNLTELV-------------------------VLDMAQNSYGGTM----------- 201
             SL N T+LV                         VLD+  NS+ G +           
Sbjct: 334 PLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLT 393

Query: 202 -------EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG------------- 241
                  ++ G++   +L+  +++L+ + LS N LT     L +L G             
Sbjct: 394 AIRFAGNKLTGEISPQVLE--LESLSFMGLSDNKLTNITGALSILQGCRKLSTLILAKNF 451

Query: 242 ------NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVL 295
                 + E+  +  GF KLRI  +   R  G++P+   +  N +++++ S  R++  + 
Sbjct: 452 YDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAW-LINLNKVEVMDLSMNRFVGSIP 510

Query: 296 SPSGKLLMTTY----DYLLTMNIKGRMMA------------------------------- 320
              G L    Y    D LLT  +   +                                 
Sbjct: 511 GWLGTLPDLFYLDLSDNLLTGELPKELFQLRALMSQKITENNYLELPIFLNPNNVTTNQQ 570

Query: 321 YNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD 380
           YNK+      I +   +  G+IP  +  LK L +L L  NNL G IP  L NLTNLE LD
Sbjct: 571 YNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLD 630

Query: 381 LSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLS 440
           LSNN  SG IP  L  L FL++FNV++N L G IP   QF TF   +F+GN  LCG  L 
Sbjct: 631 LSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLL 690

Query: 441 KGCESGEAPSNED 453
             C+   A  N++
Sbjct: 691 TSCKPTRAKENDE 703

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/421 (30%), Positives = 185/421 (43%), Gaps = 62/421 (14%)

Query: 58  KNTGHVVKLN---LSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCS 114
           K+ G + KL+   L  + L GSI    SL     L  LNL +N    +    +      S
Sbjct: 313 KDIGKLSKLSSLQLHVNNLMGSI--PVSLANCTKLVKLNLRVNQLGGTLSAIDFSRFQ-S 369

Query: 115 LKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSK---C 171
           L +LDL +  F G+ P ++ +   +  +    N  +G +   +  L SL     S     
Sbjct: 370 LSILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMT 429

Query: 172 NFSGQITSSLRNLTELVVLDMAQNSYGGTM-----------------------EIEGKVH 208
           N +G + S L+   +L  L MA+N Y  T+                        + G++ 
Sbjct: 430 NLTGAL-SILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQIFGIGACRLTGEIP 488

Query: 209 KWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGK 268
            WL+   +Q +  ++LS N   G       +PG       G     L  +DLSDN  TG+
Sbjct: 489 AWLI--KLQRVEVMDLSMNRFVG------TIPG-----WLGT-LPDLFYLDLSDNFLTGE 534

Query: 269 LPSKSFLCWNAM--KIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD 326
           LP + F     M  K  +A+E  YL+                 +  N       YN++  
Sbjct: 535 LPKELFQLRALMSQKAYDATERNYLE-------------LPVFVNPNNVTTNQQYNQLSS 581

Query: 327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386
           +   I +   +  G IP  +  LK L +L L  NN  G IP  L NLTNLE LDLSNN  
Sbjct: 582 LPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNL 641

Query: 387 SGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESG 446
           SGRIP  L  L FL++FNV++N L+G IP G QF TF   +F+GN  LCG  L   C+  
Sbjct: 642 SGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSCDPT 701

Query: 447 E 447
           +
Sbjct: 702 Q 702

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  138 bits (348), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 181/369 (49%), Gaps = 46/369 (12%)

Query: 86  LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLG 145
           ++ L  L+L  N FN     PE +     LK ++L    F G+VP S  NF  L +  L 
Sbjct: 315 MIALNSLDLGTNRFNGR--LPENLPDCKRLKNVNLARNTFHGQVPESFKNFESLSYFSLS 372

Query: 146 FNNFS--GDLLGSIGNLRSLEAIYMSKCNFSGQI---TSSLRNLTELVVLDMAQNSYGGT 200
            ++ +     LG + + ++L  + ++  NF G+     SSL +  +L VL +A     G+
Sbjct: 373 NSSLANISSALGILQHCKNLTTLVLT-LNFHGEALPDDSSL-HFEKLKVLVVANCRLTGS 430

Query: 201 MEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL 260
           M       +WL   N   L  L+LS N LTG              P     F  L  +DL
Sbjct: 431 MP------RWLSSSN--ELQLLDLSWNRLTG------------AIPSWIGDFKALFYLDL 470

Query: 261 SDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMA 320
           S+N FTG++P KS     ++   N S       V  PS       + + +  N   R + 
Sbjct: 471 SNNSFTGEIP-KSLTKLESLTSRNIS-------VNEPS-----PDFPFFMKRNESARALQ 517

Query: 321 YNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD 380
           YN+I      I L + +  G I     NLK L V +L  N L G IPS L  +T+LE+LD
Sbjct: 518 YNQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALD 577

Query: 381 LSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGK--- 437
           LSNN+ SG IP  L +L+FL+ F+V+ N L+G+IP G QF TF N+SF+ N  LCG+   
Sbjct: 578 LSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESNH-LCGEHRF 636

Query: 438 PLSKGCESG 446
           P S+G ES 
Sbjct: 637 PCSEGTESA 645

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 176/391 (45%), Gaps = 76/391 (19%)

Query: 106 PEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA 165
           P  ++ S S+ LL LR+    G++  +    T L  L L  N+FSG +  ++ N   L+ 
Sbjct: 295 PRSLSNSRSISLLSLRNNTLSGQIYLNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKT 354

Query: 166 IYMSKCNFSGQITSSLRNLTELV-----------------VLDMAQNSYG---------- 198
           I  +K  F  QI  S +N   L                  +L   QN             
Sbjct: 355 INFAKIKFIAQIPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKE 414

Query: 199 ------------------GTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240
                              + ++ G V +WL   N  +L  L+LS N L+G       +P
Sbjct: 415 ELPSVPSLQFKNLKVLIIASCQLRGTVPQWL--SNSPSLQLLDLSWNQLSG------TIP 466

Query: 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300
                P  G   + L  +DLS+N F G++P                 L  LQ ++S    
Sbjct: 467 -----PWLG-SLNSLFYLDLSNNTFIGEIPHS---------------LTSLQSLVSKENA 505

Query: 301 LLMTTYDY--LLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLH 358
           +   + D+      N     + YN+       I LS  S +G+I     +L+ L VLNL 
Sbjct: 506 VEEPSPDFPFFKKKNTNAGGLQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLK 565

Query: 359 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGK 418
           NNNL G+IP+ L  +T+LE LDLS+N  SG IP  LV+L+FL+ F+V+ N L+G IP G 
Sbjct: 566 NNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGV 625

Query: 419 QFATFDNTSFDGNSGLCGKPLSKGCESGEAP 449
           QF TF N+SF+GN GLCG+  S    + ++P
Sbjct: 626 QFQTFPNSSFEGNQGLCGEHASPCHITDQSP 656

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 180/384 (46%), Gaps = 51/384 (13%)

Query: 86  LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLG 145
           L  LE L+++ N F S    P +   S  L++LDLR+    G +  +   FT L  L L 
Sbjct: 279 LTQLEHLDVSSNKF-SGRFPPSLSQCS-KLRVLDLRNNSLSGSINLNFTGFTDLCVLDLA 336

Query: 146 FNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQN---SYGGTME 202
            N+FSG L  S+G+   ++ + ++K  F G+I  + +NL  L+ L ++ N    +  TM 
Sbjct: 337 SNHFSGPLPDSLGHCPKMKILSLAKNEFRGKIPDTFKNLQSLLFLSLSNNSFVDFSETMN 396

Query: 203 IEGKVHKWLLDPNMQNLNALNLSHNLL--------TGFDQHLVLLPGN----NEEPRTGC 250
           +           + +NL+ L LS N +        TGFD   +L  GN     + P    
Sbjct: 397 VL---------QHCRNLSTLILSKNFIGEEIPNNVTGFDNLAILALGNCGLRGQIPSWLL 447

Query: 251 GFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLL 310
              KL ++DLS N F G +P      W   K+ +   + +  + L+ +  + +T    L+
Sbjct: 448 NCKKLEVLDLSWNHFYGTIPH-----WIG-KMESLFYIDFSNNTLTGAIPVAITELKNLI 501

Query: 311 TMNIKGRMMA-------------------YNKIPDILAGIILSNKSFDGAIPASISNLKG 351
            +N     M                    YN++      I L+N   +G I   I  LK 
Sbjct: 502 RLNGTASQMTDSSGIPLYVKRNKSSNGLPYNQVSRFPPSIYLNNNRLNGTILPEIGRLKE 561

Query: 352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
           L +L+L  NN  G IP  +  L NLE LDLS N   G IP     LTFL+ F+V+ N LT
Sbjct: 562 LHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLT 621

Query: 412 GLIPQGKQFATFDNTSFDGNSGLC 435
           G IP G QF +F ++SF+GN GLC
Sbjct: 622 GAIPSGGQFYSFPHSSFEGNLGLC 645

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score =  132 bits (333), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 222/512 (43%), Gaps = 89/512 (17%)

Query: 9   ERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNL 68
           ER  LLQFK S IS D Y        ++ASW   +G++ C S++G+ CN   G V K+ L
Sbjct: 26  ERDILLQFKGS-ISDDPYN-------SLASWV-SDGDL-CNSFNGITCNPQ-GFVDKIVL 74

Query: 69  SHSCLFGSINSSSSLYKLVHLEWL-------NLALNDFNSSEI-------------QPEI 108
            ++ L G++    S  K + +  L       NL L+ F    +              PE 
Sbjct: 75  WNTSLAGTLAPGLSNLKFIRVLNLFGNRFTGNLPLDYFKLQTLWTINVSSNALSGPIPEF 134

Query: 109 INLSCSLKLLDLRSCGFWGKVPHSIGNF-TRLQFLYLGFNNFSGDLLGSIGN-------- 159
           I+   SL+ LDL   GF G++P S+  F  + +F+ L  NN  G +  SI N        
Sbjct: 135 ISELSSLRFLDLSKNGFTGEIPVSLFKFCDKTKFVSLAHNNIFGSIPASIVNCNNLVGFD 194

Query: 160 ----------------LRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEI 203
                           +  LE I +     SG ++  ++    L+++D+  N + G    
Sbjct: 195 FSYNNLKGVLPPRICDIPVLEYISVRNNLLSGDVSEEIQKCQRLILVDLGSNLFHGLAPF 254

Query: 204 EGKVHKWLLDPNMQNLNALNLSHNLLTG-------FDQHLVLLPGNNEE-----PRTGCG 251
                K        N+   N+S N   G         + L  L  ++ E     P    G
Sbjct: 255 AVLTFK--------NITYFNVSWNRFGGEIGEIVDCSESLEFLDASSNELTGRIPTGVMG 306

Query: 252 FSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLT 311
              L+++DL  N+  G +P       +  K+ + S +R   + +       + + ++L  
Sbjct: 307 CKSLKLLDLESNKLNGSIPG------SIGKMESLSVIRLGNNSIDGVIPRDIGSLEFLQV 360

Query: 312 MNIKGRMMAYNKIPD------ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGH 365
           +N+   +    ++P+      +L  + +S    +G I   + NL  +++L+LH N L G 
Sbjct: 361 LNLHN-LNLIGEVPEDISNCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGS 419

Query: 366 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
           IP  LGNL+ ++ LDLS N  SG IP  L  L  L  FNVS N L+G+IP       F +
Sbjct: 420 IPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGS 479

Query: 426 TSFDGNSGLCGKPLSKGCESGEAPSNEDHTEG 457
           ++F  N  LCG PL   C S  A +   +++ 
Sbjct: 480 SAFSNNPFLCGDPLVTPCNSRGAAAKSRNSDA 511

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score =  132 bits (333), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 180/445 (40%), Gaps = 105/445 (23%)

Query: 5   CHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCC-SWDGVHCNKNTGHV 63
           C   +++AL  FK S              P +  +     N DCC  W G+ C+ ++G V
Sbjct: 27  CSPKDQTALNAFKSSL-----------SEPNLGIFNTWSENTDCCKEWYGISCDPDSGRV 75

Query: 64  VKLNL---SHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC--SLKLL 118
             ++L   S   +F     S                  + S  I P + +L+   SL L 
Sbjct: 76  TDISLRGESEDAIFQKAGRSG-----------------YMSGSIDPAVCDLTALTSLVLA 118

Query: 119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT 178
           D +  G  G++P  I +   L+ L L  N  +G++   IG L  L  + +++   SG+I 
Sbjct: 119 DWK--GITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIP 176

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL 238
           +SL +L EL  L++ +N   G +  +          +++ L+ + L  N LTG       
Sbjct: 177 ASLTSLIELKHLELTENGITGVIPADFG--------SLKMLSRVLLGRNELTG------- 221

Query: 239 LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
                  P +  G  +L  +DLS N   G +P      W                     
Sbjct: 222 -----SIPESISGMERLADLDLSKNHIEGPIPE-----WMG------------------- 252

Query: 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLH 358
                         N+K           +L+ + L   S  G IP S+ +  GL V NL 
Sbjct: 253 --------------NMK-----------VLSLLNLDCNSLTGPIPGSLLSNSGLDVANLS 287

Query: 359 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGK 418
            N L+G IP   G+ T L SLDLS+N  SGRIP  L    F+   ++S N L G IP G 
Sbjct: 288 RNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGF 347

Query: 419 QFATFDNTSFDGNSGLCGKPLSKGC 443
            F   + TSF  N  LCG PL+  C
Sbjct: 348 PFDHLEATSFSDNQCLCGGPLTTSC 372

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJM4|IKU2_ARATH Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1

 Score =  129 bits (324), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 165/337 (48%), Gaps = 25/337 (7%)

Query: 81  SSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140
           SSL  L  L +L++  N F S     EI+NL+ +L+ + L +    GK+P  I N  RLQ
Sbjct: 166 SSLKDLKRLSFLSVGDNRFGSHPFPREILNLT-ALQWVYLSNSSITGKIPEGIKNLVRLQ 224

Query: 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGT 200
            L L  N  SG++   I  L++L  + +   + +G++    RNLT L   D + NS    
Sbjct: 225 NLELSDNQISGEIPKEIVQLKNLRQLEIYSNDLTGKLPLGFRNLTNLRNFDASNNS---- 280

Query: 201 MEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL 260
             +EG + +      ++NL +L +  N LTG            E P+    F  L  + L
Sbjct: 281 --LEGDLSELRF---LKNLVSLGMFENRLTG------------EIPKEFGDFKSLAALSL 323

Query: 261 SDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG-KLLMTTYDYLLTMNIKGRMM 319
             N+ TGKLP +    W A K ++ SE  +L+  + P   K  + T+  +L     G+  
Sbjct: 324 YRNQLTGKLPRR-LGSWTAFKYIDVSE-NFLEGQIPPYMCKKGVMTHLLMLQNRFTGQFP 381

Query: 320 AYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379
                   L  + +SN S  G IP+ I  L  LQ L+L +N  +G++   +GN  +L SL
Sbjct: 382 ESYAKCKTLIRLRVSNNSLSGMIPSGIWGLPNLQFLDLASNYFEGNLTGDIGNAKSLGSL 441

Query: 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
           DLSNN+FSG +P Q+     L   N+  N  +G++P+
Sbjct: 442 DLSNNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPE 478

Modulates the seed size by negatively regulating the cellularization of syncytial endosperm.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  128 bits (322), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 138/436 (31%), Positives = 201/436 (46%), Gaps = 64/436 (14%)

Query: 81  SSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140
           SS+  L  LE LNL  N+ N S    E++ L+ SL  LDL    F G VP SI N + L 
Sbjct: 422 SSMVNLQQLERLNLGENNLNGS-FPVELMALT-SLSELDLSGNRFSGAVPVSISNLSNLS 479

Query: 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGT 200
           FL L  N FSG++  S+GNL  L A+ +SK N SG++   L  L  + V+ +  N++ G 
Sbjct: 480 FLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGV 539

Query: 201 MEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL 260
           +  EG         ++ +L  +NLS N  +G            E P+T      L  + L
Sbjct: 540 VP-EGFS-------SLVSLRYVNLSSNSFSG------------EIPQTFGFLRLLVSLSL 579

Query: 261 SDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMA 320
           SDN  +G +P +         I N S L  L+                L +  + G + A
Sbjct: 580 SDNHISGSIPPE---------IGNCSALEVLE----------------LRSNRLMGHIPA 614

Query: 321 -YNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379
             +++P  L  + L   +  G IP  IS    L  L+L +N+L G IP     L+NL  +
Sbjct: 615 DLSRLPR-LKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKM 673

Query: 380 DLSNNKFSGRIPQQLVELTF-LAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP 438
           DLS N  +G IP  L  ++  L +FNVS N L G IP        + + F GN+ LCGKP
Sbjct: 674 DLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKP 733

Query: 439 LSKGCESGEAPSNEDHTEGSEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWI 498
           L++ CES  A       EG ++          +I++   G  +  L   F   T ++ W 
Sbjct: 734 LNRRCESSTA-------EGKKKK----RKMILMIVMAAIGAFLLSLFCCFYVYT-LLKW- 780

Query: 499 LEKLGRQQKATRRRRR 514
             K  +QQ  T  ++R
Sbjct: 781 -RKKLKQQSTTGEKKR 795

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
297745044	813	unnamed protein product [Vitis vinifera]	0.951	0.605	0.404	1e-93
296085018	1477	unnamed protein product [Vitis vinifera]	0.851	0.297	0.425	8e-84
359485824	973	PREDICTED: receptor-like protein 12-like	0.754	0.400	0.439	6e-73
147866761	859	hypothetical protein VITISV_021527 [Viti	0.779	0.469	0.386	8e-72
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.849	0.255	0.408	2e-68
224140517	979	predicted protein [Populus trichocarpa]	0.787	0.415	0.405	4e-68
296083125	656	unnamed protein product [Vitis vinifera]	0.949	0.748	0.325	9e-67
359490156	886	PREDICTED: receptor-like protein 12-like	0.715	0.417	0.398	2e-66
224140513	947	predicted protein [Populus trichocarpa]	0.750	0.409	0.422	2e-65
224140511	894	predicted protein [Populus trichocarpa]	0.808	0.467	0.391	3e-65

>gi|297745044|emb|CBI38636.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 246/608 (40%), Positives = 328/608 (53%), Gaps = 116/608 (19%)

Query: 3   PLCHDDERSALLQFKES-----RISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCN 57
           PLCHD E SALLQFK+S     + SGD  A+     P +A        +DCCSWDGV C+
Sbjct: 175 PLCHDSESSALLQFKQSFLINGQASGDPSAY-----PKVA--------IDCCSWDGVECD 221

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
           + TGHV+ L+L+ SCL+GSINSSS+L+ LVHL  L+L+ NDFN SEI   +  LS  L++
Sbjct: 222 RETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSEIPFGVGQLS-RLRM 280

Query: 118 LDLRSCGFWGKVPHSIG------------------------NFTRLQFLYLGFNNFSG-- 151
           LD+ SC F G VP  +G                        N T+L +L L FNNFSG  
Sbjct: 281 LDISSCNFTGLVPSPLGHLPQLSYLDLSNNYFSGQIPSFMANLTQLTYLDLSFNNFSGIP 340

Query: 152 ----DLLGSI------GN-------------LRSLEAIYMSKCNFSGQITSSLRNLTELV 188
               +LL ++      GN             L   + + +  CN + +    L+N  EL 
Sbjct: 341 SSLFELLKNLTDFQLSGNRLSVLSYTRTNVTLPKFKLLGLGSCNLT-EFPDFLQNQDELE 399

Query: 189 VLDMAQNSYGGTMEIE---------------GKVHKWLLDPNMQNLNALNLSHNLLTG-F 232
           +L ++ N   G + I                G++   +   NM +L  L+LS+N L+G  
Sbjct: 400 LLFLSNNRIHGPLPIPPPSTIEYSVSRNKLTGEISPLIC--NMSSLMLLDLSNNNLSGRI 457

Query: 233 DQHL--------VLLPGNNE----EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLC---- 276
            Q L        VL  G+N      P+T    + LR+IDL +N+F G++P     C    
Sbjct: 458 PQCLANLSKSLSVLDLGSNSLDGPIPQTCTVTNNLRVIDLGENQFQGQIPRSFANCMMLE 517

Query: 277 ------WNAMKIVN-ASELRYLQD--VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI 327
                 W+AMK+ + A+ LRY+Q        G   + +Y Y + M  KG    Y +IPDI
Sbjct: 518 HLYFQNWDAMKLTDIANNLRYMQTHPKFQIPGYSWIDSYMYSMRMTNKGMQRFYEQIPDI 577

Query: 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387
              I  S  +F G IP SI NLKGL +LNL  NNL GHI S LG+LT LESLDLS N+ S
Sbjct: 578 FIAIDFSGNNFKGQIPTSIGNLKGLHLLNLGGNNLTGHISSSLGDLTQLESLDLSQNQLS 637

Query: 388 GRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGE 447
           G IP QL  +TFLAFFNVS+N+L+G IPQGKQFATF + SFDGN GLCG PLS+ C S E
Sbjct: 638 GEIPLQLTRITFLAFFNVSNNHLSGPIPQGKQFATFSSASFDGNPGLCGSPLSRACGSSE 697

Query: 448 APSNEDHTEGSEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLG-RQQ 506
           A      T  S +   +   DWK +L+GY  GLV G+ +G+  ++    W ++  G RQ+
Sbjct: 698 A---SPPTSSSSKQGSTSEFDWKFVLMGYGSGLVIGVSIGYCLTSWKHEWFVKTFGKRQR 754

Query: 507 KATRRRRR 514
           K TR+ RR
Sbjct: 755 KWTRKERR 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085018|emb|CBI28433.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 212/498 (42%), Positives = 280/498 (56%), Gaps = 58/498 (11%)

Query: 42   EEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS 101
            E    DCCSWDGV C++ TGHV+ L+L+ SCL+GSINSSS+L+ LVHL+ L+L+ NDFN 
Sbjct: 857  EREGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLQRLDLSDNDFNY 916

Query: 102  SEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFN-NFSGDLLGSIGNL 160
            SEI   +  LS  L+ LDL   GF G++P  +   ++L FL L  N NFSG+L  SIG L
Sbjct: 917  SEIPFGVGQLS-RLRSLDLSFSGFSGQIPSELLALSKLVFLDLSANPNFSGELPTSIGRL 975

Query: 161  RSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEI----------------- 203
             SL  + +S CNF+G + SSL +LT+L  LD++ N +     +                 
Sbjct: 976  GSLTELDISSCNFTGSVPSSLGHLTQLYYLDLSNNHFKIPFSLVNMSQLNILSLYLLSNY 1035

Query: 204  -EGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHL--------VLLPGNN---EEPRTGCG 251
              G V   LL   ++NL  L LS N L+               L+ GN    E     C 
Sbjct: 1036 LNGTVELQLLS-KLKNLIYLQLSDNRLSFLSPLPVPPPSTVEYLVSGNKLTGEISPLICN 1094

Query: 252  FSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLS-----PSGKLLMTTY 306
             + L ++DLS N  +G++P     C     + N S   ++ D+ S     P  ++   ++
Sbjct: 1095 MTSLELLDLSSNNLSGRIPQ----C-----LANFSRSLFVLDLGSNSLDGPIPEICTVSH 1145

Query: 307  DY----LLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNL 362
            +     L     +G++    +I D    I  S  +F G IP SI +LKG+ +LNL  N+L
Sbjct: 1146 NLNVIDLGDNQFQGQIPRSLRILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDL 1205

Query: 363  QGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFAT 422
             GHIPS LGNLT LESLDLS NK SG IP QL  LTFL FFNVS N+LTG IPQGKQFAT
Sbjct: 1206 TGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFAT 1265

Query: 423  FDNTSFDGNSGLCGKPLSKGCESGEA--PSNEDHTEGSEESLFSGASDWKIILIGYAGGL 480
            F+N SFDGN GLCG PLS+ C S EA  P++    +GS         DWKI+L+GY  GL
Sbjct: 1266 FENASFDGNLGLCGSPLSRECGSSEALPPTSSSSKQGSTTKF-----DWKIVLMGYGSGL 1320

Query: 481  VAGLVLGFNFSTGIIGWI 498
            + G+ +G    T I  WI
Sbjct: 1321 LIGVSIG-QHVTNIPSWI 1337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 185/421 (43%), Positives = 236/421 (56%), Gaps = 31/421 (7%)

Query: 101 SSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF-LYLGFNNFSGDLLGSIGN 159
           + EI P I N++ SL+LLDL S    G++P  + NF+R  F L LG N+  G +      
Sbjct: 573 TGEISPLICNMT-SLELLDLSSNNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTV 631

Query: 160 LRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219
             +L  I +    F GQI  SL N T L  L +  N      +I      WL    +  L
Sbjct: 632 SHNLNVIDLGDNQFQGQIPRSLVNCTMLEHLVLGNN------KINDIFPFWL--GALPQL 683

Query: 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNA 279
             L L  N   G                T   F KLRIIDLSDN F G LPS+ F  W+A
Sbjct: 684 QVLILRSNRFHGAIGSW----------HTNFRFPKLRIIDLSDNEFIGDLPSEYFQNWDA 733

Query: 280 MKIVN-ASELRYLQ--DVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNK 336
           MK+ + AS LRY+Q   ++     +++T Y Y +TM  KG    Y +I D    I  S  
Sbjct: 734 MKLTDIASGLRYMQISPMIDLKNNVMITGYMYSMTMTNKGMQRFYERILDTFMAIDFSGN 793

Query: 337 SFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE 396
           +F G IP SI +LKG+ +LNL  N+L GHIPS LGNLT LESLDLS NK SG IP QL  
Sbjct: 794 NFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTR 853

Query: 397 LTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEA--PSNEDH 454
           LTFL FFNVS N+LTG IPQGKQFATF+N SFDGN GLCG PLS+ C S EA  P++   
Sbjct: 854 LTFLEFFNVSHNHLTGHIPQGKQFATFENASFDGNLGLCGSPLSRECGSSEALPPTSSSS 913

Query: 455 TEGSEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLG-RQQKATRRRR 513
            +GS         DWKI+L+GY  GL+ G+ +G+  ++    W ++ +G RQ+K TR+  
Sbjct: 914 KQGSTTKF-----DWKIVLMGYGSGLLIGVSIGYCLTSWKHEWFVKTIGKRQRKWTRKEG 968

Query: 514 R 514
           R
Sbjct: 969 R 969

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866761|emb|CAN80989.1| hypothetical protein VITISV_021527 [Vitis vinifera]

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 193/499 (38%), Positives = 247/499 (49%), Gaps = 96/499 (19%)

Query: 86  LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLG 145
           L HL+   L LN  N S   P ++    SL  L LR CG +G+ P +I     LQ L + 
Sbjct: 196 LTHLK--TLHLNLVNISSTIPHVLANLSSLTSLLLRGCGLYGEFPMNIFRLPSLQLLSVR 253

Query: 146 FN------------------------NFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
           +N                        +FSG+L  SIG L SL  + +  C F+G I SSL
Sbjct: 254 YNPGLTGYLPEFQETSPLKMLFLAGTSFSGELPASIGRLVSLTVLDLDSCKFTGMIPSSL 313

Query: 182 RNLTELVVLDMAQNSYGGTM-------------------EIEGKVHKWLLDPNMQNLNAL 222
            +LT+L +LD++ N + G +                    + G + +   +P+  +L  +
Sbjct: 314 SHLTQLSILDLSFNLFTGQISQSLTSLSSSLSILNLGGNNLHGPIPQMCTNPS--SLRMI 371

Query: 223 NLSHNLLTG----------FDQHLVLLPGNNE---------------------------- 244
           +LS N   G            + LVL  GNN+                            
Sbjct: 372 DLSENQFQGQIPISLANCTMLEQLVL--GNNQIHDIFPFWLGALPQLQVLILRSNRFHGA 429

Query: 245 --EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQ--DVLSPSGK 300
                T   F KLRIIDLSDN F G LPS     W+AMK+  A+ L+ +Q        G 
Sbjct: 430 IGSWHTNFRFPKLRIIDLSDNEFIGDLPSVYXQNWDAMKLAXANHLKVMQANQTFQSPGY 489

Query: 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNN 360
                Y Y +TM  KG    Y +IPD    I  S  +F G IP SI NLKGL +LNL  N
Sbjct: 490 TQTFKYIYSMTMTNKGMQRFYQEIPDTFIAIDFSGNNFKGQIPTSIGNLKGLHLLNLGRN 549

Query: 361 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQF 420
           N+ GHIPS L NLT +ESLDLS NK SG IP QL  +TFLAFFNVS+N+LTG IPQGKQF
Sbjct: 550 NITGHIPSSLMNLTQMESLDLSQNKLSGEIPWQLTRMTFLAFFNVSNNHLTGPIPQGKQF 609

Query: 421 ATFDNTSFDGNSGLCGKPLSKGCESGEA-PSNEDHTEGSEESLFSGASDWKIILIGYAGG 479
           ATF NTSFDGN GLCG PLS+ C S EA PS    ++    S F    DWK +L+GY  G
Sbjct: 610 ATFPNTSFDGNPGLCGSPLSRACGSSEASPSTPSSSKQGSTSEF----DWKFVLMGYGSG 665

Query: 480 LVAGLVLGFNFSTGIIGWI 498
           LV G+ +G+  ++    W 
Sbjct: 666 LVIGVSIGYCLTSWKHKWF 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 213/522 (40%), Positives = 271/522 (51%), Gaps = 83/522 (15%)

Query: 3   PLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGH 62
           PLCHD E SALLQFK+S ++ +  ++       ++ WK      +CCSWDGV CN+ TGH
Sbjct: 263 PLCHDSESSALLQFKQSFLTDEHASYDPSAYSKVSMWKSHGEGSNCCSWDGVECNRETGH 322

Query: 63  VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQ--------PEIINLSCS 114
           V+ L L+ S L GSINSSSSL+ LVHL+ L+L+ N FN S+I         P ++  S  
Sbjct: 323 VIGLLLASSHLNGSINSSSSLFSLVHLQRLDLSDNYFNHSQIPYGVGFEQLPXVLPWS-R 381

Query: 115 LKLLDLRSCGFWGKVPHSIGNFTRLQFLY-LGFNNFSGDLLGSIGNLRSLEAIY------ 167
           + +LDL S    G +P    +     F Y +     SG +   I N+ SL  +       
Sbjct: 382 MHILDLSSNMLQGSLPVPPPS----TFDYSVSXXKLSGQIPPLICNMSSLSLLDLSGNSL 437

Query: 168 ---MSKCN----------------FSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVH 208
              + +C                   G I  +    + L ++D+++N      +++GK+ 
Sbjct: 438 SGRIPQCLTNLSSSXSILNLRGNXLHGSIPQTCTETSNLRMIDLSEN------QLQGKIP 491

Query: 209 KWLLDPNMQNLNALNLSHNLLTG-FDQHLVLLP-------------GNNEEPRTGCGFSK 254
             L   N   L  L L  NL+   F   L  LP             G    P+T   FSK
Sbjct: 492 GSLA--NCMMLEELVLGXNLINDIFPFXLGSLPRLQVLILRSNLFHGAIGRPKTNFQFSK 549

Query: 255 LRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNI 314
           LRIIDLS N FT  L                ++L +  +V   S K     Y + +TM  
Sbjct: 550 LRIIDLSYNGFTDNL------------TYIQADLEF--EVPQYSWK---DPYSFSMTMMN 592

Query: 315 KGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT 374
           KG    Y KIPDIL  I LS+  F G IP SI N KGLQ LNL NN L G IP+ L NLT
Sbjct: 593 KGMTREYKKIPDILTIIDLSSNKFYGEIPESIGNPKGLQALNLSNNALTGPIPTSLANLT 652

Query: 375 NLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGL 434
            LE+LDLS NK S  IPQQLV+LTFL FFNVS N+LTG IPQGKQFATF NTSFDGN GL
Sbjct: 653 LLEALDLSQNKLSREIPQQLVQLTFLEFFNVSHNHLTGPIPQGKQFATFPNTSFDGNLGL 712

Query: 435 CGKPLSKGCESGEA-PSNEDHTEGSEESLFSGASDWKIILIG 475
           CG PLS+ C + EA P      + S  S F    DWKI+L+G
Sbjct: 713 CGSPLSRACGNSEASPPAPSIPQQSSASEF----DWKIVLMG 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 179/441 (40%), Positives = 238/441 (53%), Gaps = 34/441 (7%)

Query: 89  LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN 148
           L W NL     NS++ Q  +     ++    + +    G++P  I N T L  L L  NN
Sbjct: 552 LPWNNLRSLSLNSNKFQGSLPIPPPAIFEYKVSNNKLNGEIPEVICNLTSLFVLDLSINN 611

Query: 149 FSGDLLGSIGNLRSLEAIY-MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKV 207
            SG L   +GN  S  ++  +   +FSG I  +  +   L V+D +QN      ++EGK+
Sbjct: 612 LSGKLPQCLGNKSSTASVLNLHNNSFSGDIPETFTSGCSLRVVDFSQN------KLEGKI 665

Query: 208 HKWLLDPNMQNLNALNLSHNLLTG-FDQHLVLLP-------------GNNEEPRTGCGFS 253
            K L   N   L  LNL  N +   F   L +LP             G   +P T   F 
Sbjct: 666 PKSL--ANCTELEILNLEQNNINDVFPSWLGVLPDLRVMILRSNGLHGVIGKPETNVEFP 723

Query: 254 KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLS--PSGKLLMTTYDYLLT 311
           +L+I+DLS+N F GKLP + F  W AMK V   +L Y+Q   S   S   +   Y+Y +T
Sbjct: 724 RLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNEDLIYMQANTSFLTSHNTMEKQYEYSMT 783

Query: 312 MNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLG 371
           M  KG M  Y KI D L  I LS+  F+G IP  + +LK L +LNL NN L G IP  L 
Sbjct: 784 MTNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIPPSLS 843

Query: 372 NLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGN 431
           NL  LE+LDLS+NK SG IP QL +LTFLA FNVS N+L+G IP+G QF TFDNTSFD N
Sbjct: 844 NLKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDAN 903

Query: 432 SGLCGKPLSKGCESGE---APSNEDHTEGSEESLFSGASDWKIILIGYAGGLVAGLVLGF 488
            GLCG+PLSK C +GE     + ED   GS        S WK+++IGYA GLV G++LG 
Sbjct: 904 PGLCGEPLSKECGNGEDSLPAAKEDEGSGSPPE-----SRWKVVVIGYASGLVIGVILGC 958

Query: 489 NFSTGIIGWILEK-LGRQQKA 508
             +T    W++E    R+ ++
Sbjct: 959 AMNTRKYEWLVENYFARRHRS 979

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083125|emb|CBI22761.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 207/635 (32%), Positives = 299/635 (47%), Gaps = 144/635 (22%)

Query: 3   PLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGH 62
           PLCH  + SALL+FK+S +   F +      P +  W+PE    DCCSWDGV C+ N GH
Sbjct: 41  PLCHGSDSSALLEFKQSFLIEKFASGDPSAYPKVEMWQPEREGSDCCSWDGVECDTNNGH 100

Query: 63  VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRS 122
           V+ L+LS SCL+GSINSSSSL++LVHL  L+L+ NDFN S+I   +  LS  L  L+L S
Sbjct: 101 VIGLDLSSSCLYGSINSSSSLFRLVHLLRLDLSDNDFNYSKIPHGVGQLS-RLTSLNLSS 159

Query: 123 CGFWGKVPHSIG------------------------NFTRLQFLYLGFNNFSGDLLGSIG 158
             F G++   I                         + + L+ L L   +FSG L  SIG
Sbjct: 160 SRFSGQISSQILELSKLLKKLHLNEVNISSRVPDFHHTSSLKLLALAGTSFSGRLPTSIG 219

Query: 159 NLRSLEAIYMSKCNF-SGQITSSLRNLTELVVLDMAQNSYGGTM---------------- 201
           NL SL  + +S CNF SG I SSL  L +L  LD+++NS+ G +                
Sbjct: 220 NLDSLVELNISSCNFTSGLIPSSLGRLIQLTSLDLSRNSFSGQIPSLSNLKELDTLDLSY 279

Query: 202 -EIEGKVHKWLLDPNMQNLNALNLSHNLLTG----------FDQHLV-------LLPGNN 243
            +  G++  WL+  N+  L  L L+ N L G            Q+ +       L+P N+
Sbjct: 280 NQFIGEIPSWLM--NLTRLRRLYLAGNRLEGPIPNELEVLLLRQNKIHGPIPKWLIPPNS 337

Query: 244 ----------EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCW-NAMKIVNASEL--RY 290
                     E P + C  S LR++D S N  +G++P    LC  N    +NA  L    
Sbjct: 338 TTVSENELSGEIPPSFCNMSSLRLLDFSSNSVSGRIP----LCLANFSSSLNALNLGSNN 393

Query: 291 LQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD------ILAGIILSNKSFDGAIPA 344
           L  V+  +     T+ + L+ +++ G  +   ++P       +L  + L N   +   P 
Sbjct: 394 LYGVIPQA----CTSRNNLMKIDLGGNHLE-GQVPTSLGSCLMLEKLDLGNNQINDTFPF 448

Query: 345 SISNLKGLQVLNLHNNNLQGHI--PSCLGNLTNLESLDLSNNKFSGRIPQQLVE------ 396
            +  L  LQVL L +N   G I  P        L  +D+S+N F+G  P +  +      
Sbjct: 449 WLGALPKLQVLILRSNKFHGEIRGPRTNFGFPKLRIIDISHNGFTGNFPWEYFQSWDAMK 508

Query: 397 ------LTFL-----------------------------AFFNVSDNYLTGLIPQGKQFA 421
                 LT++                              FFNVS N+L G IP+  QF+
Sbjct: 509 ILESKHLTYMQMADCIGKAKGLHLLNLSNNALTVQLTFLEFFNVSHNHLKGPIPRANQFS 568

Query: 422 TFDNTSFDGNSGLCGKPLSKGCESGEA----PSNEDHTEGSEESLFSGASDWKIILIGYA 477
           TF N+SFDGN GLCG PLS+ C + EA    PS  D +         G  DW I+L+GY 
Sbjct: 569 TFPNSSFDGNLGLCGNPLSRDCGNPEASAPPPSTSDQSS-------PGELDWIIVLLGYG 621

Query: 478 GGLVAGLVLGFNFSTGIIGWILEKLGRQQKATRRR 512
            GLV G+++G+  +T    W +   GRQ++  R++
Sbjct: 622 SGLVIGVLMGYRLTTRKHEWFVRTFGRQKRWRRKK 656

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/419 (39%), Positives = 214/419 (51%), Gaps = 49/419 (11%)

Query: 101 SSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL 160
           S  I   + NLS SL +LDL S    G +P +      L+ + LG N F G +  S  N 
Sbjct: 511 SGRIPQCLANLSKSLFILDLGSNNLDGPIPQTCTVPNNLRVIDLGENQFQGQIPRSFANC 570

Query: 161 RSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220
             LE + +            L  L +L VL +  N +       G +  W          
Sbjct: 571 MMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRF------HGAIGSW---------- 614

Query: 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAM 280
                                      +   F KLRI+DLSDN+F G LPS+ F  W+AM
Sbjct: 615 --------------------------HSNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAM 648

Query: 281 KIVN-ASELRYLQ--DVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKS 337
           K+ + A++LRY+Q        G      Y Y +TM  +G    Y KIPD+   I  S  +
Sbjct: 649 KLTDIANDLRYMQARPKFQIPGYGWTAHYMYSMTMTNRGMQRFYEKIPDVFIAIDFSGNN 708

Query: 338 FDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVEL 397
           F G IP SI NL G  +LNL +NNL GHIPS LG+LT LESLDLS N+ SG IP QL  +
Sbjct: 709 FKGQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLSQNQLSGEIPLQLTRI 768

Query: 398 TFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEG 457
           TFLAFFNVS N+LTG IPQG QF TF N SFDGN GLCG PLS+ C S EA      T  
Sbjct: 769 TFLAFFNVSHNHLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRACGSSEA---SPPTSS 825

Query: 458 SEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLG-RQQKATRRRRRR 515
           S +   +   DWK +L+GY  GLV G+ +G+  ++    W ++  G RQ+K TR+ RR 
Sbjct: 826 SSKQGSTSEFDWKFVLMGYGSGLVIGVSIGYYLTSWKHEWFVKTFGKRQRKWTRKERRH 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 178/421 (42%), Positives = 233/421 (55%), Gaps = 33/421 (7%)

Query: 106 PEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL-QFLYLGFNNFSGDLLGSIGNLRSLE 164
           P++I    SL +L+L +    GK+P  +GN +R    L L  N+FSGD+  +  +  SL 
Sbjct: 548 PKVICDLTSLSVLELSNNNLSGKLPPCLGNKSRTASVLNLRHNSFSGDIPETFTSGCSLR 607

Query: 165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNL 224
            +  S+    G+I  SL N TEL +L++ QN+      I      WL    + +L  + L
Sbjct: 608 VVDFSQNKLEGKIPKSLANCTELEILNLEQNN------INDVFPSWL--GILPDLRVMIL 659

Query: 225 SHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMK-IV 283
             N L G       + GN   P T   F  L+I+DLS+N F GKLP + F  W AMK + 
Sbjct: 660 RSNGLHG-------VIGN---PETNVEFPTLQIVDLSNNSFKGKLPLEYFRNWTAMKNVR 709

Query: 284 NASELRYLQDVLS-PSGKLLMT-TYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGA 341
           N   L Y+Q   S  + ++ MT  Y+Y +TM  KG M  Y KI D L  I LS   F+G 
Sbjct: 710 NDQHLIYMQANASFQTSQIRMTGKYEYSMTMTNKGVMRLYEKIQDSLTVIDLSRNGFEGG 769

Query: 342 IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLA 401
           IP  + +LK L +LNL NN L G IP  L NL  LE+LDLS NK SG IP QL +LTFLA
Sbjct: 770 IPEVLGDLKALHLLNLSNNFLSGGIPPSLSNLKKLEALDLSQNKLSGEIPVQLAQLTFLA 829

Query: 402 FFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGC----ESGEAPSNEDHTEG 457
            FNVS N+L+G IP+G QF TFDNTSFD N  LCG+PLSK C    E     + ED  EG
Sbjct: 830 VFNVSHNFLSGRIPRGNQFETFDNTSFDANPALCGEPLSKECGNNGEDSLPAAKED--EG 887

Query: 458 SEESLFSGASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKL--GRQQKATRRRRRR 515
           S   L  G   WK+++IGYA GLV G++LG   +T    W+++     RQ K    + R 
Sbjct: 888 SGYQLEFG---WKVVVIGYASGLVIGVILGCAMNTRKYEWLVKNYFARRQNKGQDLKTRL 944

Query: 516 R 516
           R
Sbjct: 945 R 945

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 175/447 (39%), Positives = 237/447 (53%), Gaps = 29/447 (6%)

Query: 89  LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN 148
           L W NL     NS++ Q  +     ++    + +    G++P  I N T L  L L  NN
Sbjct: 456 LPWNNLRSLSLNSNKFQGSLPIPPPAIYEYQVSNNKLNGEIPEVICNLTSLSVLDLSNNN 515

Query: 149 FSGDLLGSIGNLRSLEAIYMSKCN-FSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKV 207
            SG L   +GN  S  ++   + N FSG I  +  +   L V+D++QN      ++EGK+
Sbjct: 516 LSGKLPPCLGNKSSTASVLNLRNNSFSGDIPETFTSGCSLRVVDLSQN------KLEGKI 569

Query: 208 HKWLLDPNMQNLNALNLSHNLLTG-FDQHLVLLP-------------GNNEEPRTGCGFS 253
            K L   N   L  LNL  N +   F   L +LP             G   +P T   F 
Sbjct: 570 PKSL--ANCAELEILNLEQNNINDVFPSWLGMLPDLKVLIFRSNGLHGVIGKPETNVDFP 627

Query: 254 KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQ--DVLSPSGKLLMTTYDYLLT 311
           +L+I+DLS+N F GKLP + F  W AMK V+   L Y+Q    +  S   +   Y Y +T
Sbjct: 628 RLQIVDLSNNSFKGKLPLEYFRNWTAMKNVHNEPLIYMQADTSIDISRASVTNPYPYSMT 687

Query: 312 MNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLG 371
           M  KG M  Y KI D L+ I LS+  F+G IP  + +LK L +LNL NN L G IP  L 
Sbjct: 688 MTNKGVMTLYEKIQDSLSAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGRIPPSLS 747

Query: 372 NLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGN 431
           NL  LE+LDLS+NK SG IP QL +LTFL  FNVS N+L+G IP+G QF  FD+TSFD N
Sbjct: 748 NLKELEALDLSHNKLSGEIPVQLAQLTFLEIFNVSHNFLSGPIPRGNQFGAFDSTSFDAN 807

Query: 432 SGLCGKPLSKGCESGEAPSNEDHTEGSEESLFSGASDWKIILIGYAGGLVAGLVLGFNFS 491
           SGLCG+PLSK C +   P      +G   S +     WK+++IGYA GL+ G++LG   +
Sbjct: 808 SGLCGEPLSKKCGNDVDPLPAPEEDGG--SGYPLEFGWKVVVIGYATGLLIGVILGCVMN 865

Query: 492 TGIIGWILEK-LGR-QQKATRRRRRRR 516
           T    W+++    R Q K    + R R
Sbjct: 866 TRKYEWVVKNYFARWQNKGQHLKNRLR 892

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.369	0.265	0.395	8.1e-42
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.727	0.638	0.326	1.1e-39
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.369	0.192	0.381	1.6e-39
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.764	0.498	0.314	2.1e-39
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.738	0.436	0.316	6.8e-37
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.760	0.552	0.309	2.5e-36
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.684	0.397	0.324	3.1e-36
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.270	0.145	0.375	4.8e-36
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.740	0.474	0.302	4.8e-35
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.760	0.399	0.299	7.7e-35

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 8.1e-42, Sum P(2) = 8.1e-42
 Identities = 79/200 (39%), Positives = 118/200 (59%)

Query:     4 LCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEE--GNVDCCSWDGVHCNKNTG 61
             LC  D+++ALL+FK      +FY  +F+    +   K E+   N DCCSWDG+ C+  TG
Sbjct:    28 LCRQDQKNALLEFKN-----EFYVHEFNSNGIVGVKKTEKWRNNTDCCSWDGISCDPKTG 82

Query:    62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
              VV+L+L +S L G +   SSL++L HL  L+L  N+F  S I P+ I     L++L L 
Sbjct:    83 KVVELDLMNSFLNGPLRYDSSLFRLQHLHNLDLGSNNF--SGILPDSIGSLKYLRVLSLG 140

Query:   122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
              C  +GK+P S+GN T L  L L  N+F+G+L  S+G+L  L  +++     SG   S L
Sbjct:   141 DCNLFGKIPSSLGNLTYLTNLDLSVNDFTGELPDSMGHLNKLTELHLGSAKLSGNFPSML 200

Query:   182 RNLTELVVLDMAQNSYGGTM 201
              NL+EL ++D+  N +GG +
Sbjct:   201 LNLSELTLIDLGSNQFGGML 220

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 137/420 (32%), Positives = 197/420 (46%)

Query:    63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP--EIINLSCSLKLLDL 120
             +V L+LS++   G   S   +     ++ L++ALN F  S   P   IINLS        
Sbjct:   148 LVSLDLSNNSFTGFNGSLDHVLANSSVQVLDIALNSFKGSFPNPPVSIINLSAW------ 201

Query:   121 RSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDL---LGS--IGNLRS--LEAIYMSKCNF 173
              +  F G +P S+ N T L  L L +NNF+G +   +G+  I NLR   LE     +  +
Sbjct:   202 -NNSFTGDIPLSVCNRTSLDVLDLSYNNFTGSIPPCMGNFTIVNLRKNKLEGNIPDEF-Y 259

Query:   174 SGQITSSL----RNLTELVVLDMAQNSYGGTMEIE-GKVHK----WLLD-PNMQXXXXXX 223
             SG +T +L      LT  +   +   S+   + ++  +++     WL   PN++      
Sbjct:   260 SGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRINDSFPLWLKALPNLKVLTLRS 319

Query:   224 XXXXXXTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV 283
                     F  H  + P +++   +   F KL+I+++S NRFTG LP+  F  W+   + 
Sbjct:   320 ------NSF--HGPMSPPDDQ---SSLAFPKLQILEISHNRFTGSLPTNYFANWSVKSLK 368

Query:   284 NASELR-YLQDVLSPSGKXXXXXXXXXXXXNIKGRMMAYNKIPDILAGIILSNKSFDGAI 342
                E R Y+ D  S                  KG  M   K+    + I  S    +G I
Sbjct:   369 MYDEERLYMGDYSSDR-----FVYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGNKLEGEI 423

Query:   343 PASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
             P SI  LK               IP    N+T LESLDLS NK SG IPQ+L  L++LA+
Sbjct:   424 PESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAY 483

Query:   403 FNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEESL 462
              +VSDN LTG IPQG Q      +SF+GNSGLCG PL + C   +APS ++  E  EE L
Sbjct:   484 IDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDAPSTQEPEEEEEEIL 543

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
 Identities = 76/199 (38%), Positives = 95/199 (47%)

Query:   251 GFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKXXXXXXXXXX 310
             GF  LRI D+S N F G LPS  F+ W A+   + +EL+Y+ D   P             
Sbjct:   737 GFPLLRITDVSHNDFVGTLPSDYFMNWTAIS-KSETELQYIGD---PED---YGYYTSLV 789

Query:   311 XXNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXXIPSCL 370
               N KG  M   +I      I  +     G IP S+  LK               IPS L
Sbjct:   790 LMN-KGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSL 848

Query:   371 GNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDG 430
              NLTNLESLD+S NK  G IP +L  L+ L + NVS N L G IPQG QF   + +S++G
Sbjct:   849 ANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEG 908

Query:   431 NSGLCGKPLSKGCESGEAP 449
             N G+ G  L   C    AP
Sbjct:   909 NPGIYGSSLKDVCGDIHAP 927

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 2.1e-39, P = 2.1e-39
 Identities = 132/420 (31%), Positives = 186/420 (44%)

Query:    63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSS-EIQPEIINLSCSLKLLDLR 121
             ++ +NLS +  F S+  +  +     +  L+L+ N F  S  I P  +N+  +       
Sbjct:   352 MLHVNLSRNS-FDSLEGTPKIILNSSISELDLSSNAFKGSFPIIPPYVNIMAASNNY--- 407

Query:   122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR-SLEAIYMSKCNFSGQITSS 180
                F G +P       RL  L L  NNFSG +   + N+   LEA+ +S  + +G++   
Sbjct:   408 ---FTGGIPLIFCKRYRLSLLDLSNNNFSGTIPRCLTNVSLGLEALKLSNNSLTGRLPD- 463

Query:   181 LRNLTELVVLDMAQNSYGGTME---IEGKVHKWLLDPNMQXXXXXXXXXXXXTGFDQHLV 237
             + +   LV+LD+  N   G +    +     K+L                  T  +  ++
Sbjct:   464 IED--RLVLLDVGHNQISGKLPRSLVNCTTLKFLNVEGNHINDTFPFWLKALTRLE--II 519

Query:   238 LLPGNN-----EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE-LRYL 291
             +L  N        P     F+ LRIID+S N F G LP   F  W+A  +VN  +  R+ 
Sbjct:   520 VLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNGSLPQNYFANWSA-PLVNTPQGYRWP 578

Query:   292 QDVLSPSGKXXXXXXXX-XXXXNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLK 350
             +       K              IKGR +   KIPD    I  S  SF+G IP SI +LK
Sbjct:   579 EYTGDEHSKYETPLWSYPSIHLRIKGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLK 638

Query:   351 XXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYL 410
                            IPS L  L  LESLDLS N+ SG IPQ+L ELTFL + N+S N L
Sbjct:   639 SLIVLDLSNNSFTGRIPSSLAKLKQLESLDLSQNRISGNIPQELRELTFLGYVNMSHNRL 698

Query:   411 TGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEESLFSGASDWK 470
             TG IPQ  Q      +SF+GN  LCG PL + C  G    +  HT+  E      A +WK
Sbjct:   699 TGQIPQSTQVGGQPKSSFEGNINLCGLPLQESCLRGNGVPSTPHTQEQELPKQEHALNWK 758

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 6.8e-37, P = 6.8e-37
 Identities = 129/407 (31%), Positives = 194/407 (47%)

Query:    66 LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDF----NSSEIQPEIINLSCSLKLLDLR 121
             L++S++ + G + S    + L+ LE+++++ N+F     S++++  ++    S+K     
Sbjct:   433 LDISNNKIKGQVPS----WLLLQLEYMHISNNNFIGFERSTKLEKTVVPKP-SMKHFFGS 487

Query:   122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRS-LEAIYMSKCNFSGQITSS 180
             +  F GK+P  I +   L  L L  NNFSG +   +G  +S L  + + +   SG +  +
Sbjct:   488 NNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKT 547

Query:   181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDP-NMQXXXXXXXXXXXXTGFDQHLVL- 238
             +  +  L  LD++ N   G +     +H   L+  N++            +   +  VL 
Sbjct:   548 I--IKSLRSLDVSHNELEGKLP-RSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLV 604

Query:   239 LPGNNEEPRTG-CGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSP 297
             L  N    R     F KLRIID+S N F G LPS  F+ W  M  +  +E R+ +  +  
Sbjct:   605 LRSNAFHGRIHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMG- 663

Query:   298 SGKXXXXXXXXXXXXNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXX 357
             SG             N KG  M   +I  I   +  S   F+G IP SI  LK       
Sbjct:   664 SG----YYHDSMVLMN-KGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNL 718

Query:   358 XXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
                     IPS +GNL  LESLD+S NK SG IPQ+L  L++LA+ N S N L G +P G
Sbjct:   719 SSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGG 778

Query:   418 KQFATFDNTSFDGNSGLCGKPLSKGCE--SGEAPSNEDHTEGSEESL 462
              QF T   +SF+ N GLCG+PL + C       PS E  T  SE+ L
Sbjct:   779 TQFRTQSASSFEENLGLCGRPLEE-CRVVHEPTPSGESETLESEQVL 824

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 2.5e-36, P = 2.5e-36
 Identities = 128/414 (30%), Positives = 187/414 (45%)

Query:    59 NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLL 118
             N   + +L+LS +  FG I     L+ L +L ++NL+ N F   + +P     S    LL
Sbjct:   263 NLSQLTRLDLSSNNFFGEI--PGWLWTLPNLFYVNLSYNTFIGFQ-RPNKPEPSMG-HLL 318

Query:   119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRS-LEAIYMSKCNFSGQI 177
                +  F GK+P  I     L+ L L  NNFSG +   +GNL+S L  + + + N SG +
Sbjct:   319 GSNN-NFTGKIPSFICELRSLETLDLSDNNFSGLIPRCMGNLKSNLSHLNLRQNNLSGGL 377

Query:   178 TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQXXXXXXXXXXXXTGFDQHLV 237
                +  +  L  LD+  N   G +    +    L   N++            T   +  V
Sbjct:   378 PKHIFEI--LRSLDVGHNQLVGKLPRSLRFFSTLEVLNVESNRINDTFPFWLTSLPKLQV 435

Query:   238 LLPGNN--EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVL 295
             L+  +N    P     F KLRIID+S N F G LPS  F+ W+AM  +   E R   + +
Sbjct:   436 LVLRSNAFHGPIHEASFLKLRIIDISHNHFNGTLPSDYFVKWSAMSSLGTDEDRSNANYM 495

Query:   296 SPSGKXXXXXXXXXXXXNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKXXXXX 355
                G              ++  ++   +I  I   +  S   F+G IP SI  LK     
Sbjct:   496 ---GSVYYQDSMVLMNKGVESELI---RILTIYTALDFSGNKFEGEIPKSIGLLKELLVL 549

Query:   356 XXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
                       IPS +G LT LESLD+S NK  G IPQ++  L+FL+  N S N L GL+P
Sbjct:   550 NLSNNAFTGHIPSSMGKLTALESLDVSQNKLYGEIPQEIGNLSFLSCMNFSHNQLAGLVP 609

Query:   416 QGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDH-----TEGSEESLFS 464
              G+QF T   +SF+ N GL G  L + C     P++        TE  +E + S
Sbjct:   610 GGQQFLTQPCSSFEDNLGLFGSTLEEDCRDIHTPASHQQYKTPETEEEDEEVIS 663

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.1e-36, P = 3.1e-36
 Identities = 121/373 (32%), Positives = 168/373 (45%)

Query:   100 NSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGN 159
             +S+  +  + +L  S+K   + S  F  ++P SI N + L  + L +NNF+G +      
Sbjct:   470 DSNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICNRSSLAAIDLSYNNFTGPIPPC--- 526

Query:   160 LRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTME---IEGKVHKWLLDPNM 216
             LR+LE +Y+   N  G I  +L +   L  LD++ N   G +    +     K+L   N 
Sbjct:   527 LRNLELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINN 586

Query:   217 QXXXXXXXXXXXXTGFDQHLVLLP----GNNEEPRTG-CGFSKLRIIDLSDNRFTGKLPS 271
             +                Q L L      G    P  G  GF +LRI ++SDN+FTG LP 
Sbjct:   587 RIEDTFPFWLKALPNL-QVLTLRSNRFYGPISPPHQGPLGFPELRIFEISDNKFTGSLPP 645

Query:   272 KSFLCWNAM-KIVNASELRYL--QDVLSPSGKXXXXXXXXXXXXNIKGRMMAYNKIPDIL 328
               F+ W A  + +N     Y+  ++ L   G               KG  M   K     
Sbjct:   646 NYFVNWKASSRTMNQDGGLYMVYEEKLFDEG---GYGYTDALDLQYKGLHMEQAKALTSY 702

Query:   329 AGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSG 388
             A I  S    +G IP SI  LK               IP  + NL NLESLD+S N+ SG
Sbjct:   703 AAIDFSGNRLEGQIPESIGLLKALIAVNISNNAFTGHIPLSMANLENLESLDMSRNQLSG 762

Query:   389 RIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGC-ESGE 447
              IP  L  ++FLA+ NVS N LTG IPQG Q      +SF+GN+GLCG PL + C  +G 
Sbjct:   763 TIPNGLGSISFLAYINVSHNQLTGEIPQGTQITGQSKSSFEGNAGLCGLPLKESCFGTGA 822

Query:   448 APSNEDHTEGSEE 460
              P      E  EE
Sbjct:   823 PPMYHQKQEDKEE 835

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 4.8e-36, Sum P(2) = 4.8e-36
 Identities = 53/141 (37%), Positives = 74/141 (52%)

Query:   327 ILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKF 386
             +L G+ LS     G IP     L                IP  + ++  +ES DLS N+ 
Sbjct:   780 LLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRL 839

Query:   387 SGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESG 446
              GRIP QL ELT L+ F VS N L+G+IPQG+QF TFD  S+ GN  LCG+P ++ C + 
Sbjct:   840 QGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNN 899

Query:   447 EAPSNEDHTEGSEESLFSGAS 467
                  ++  E ++ES+    S
Sbjct:   900 SYEEADNGVE-ADESIIDMVS 919

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 4.8e-35, P = 4.8e-35
 Identities = 126/417 (30%), Positives = 180/417 (43%)

Query:    59 NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLL 118
             N   + ++NL ++ LF  +  S  +     +  L+LA N F     +P +     S+ LL
Sbjct:   337 NLPRLRRVNLFNN-LFTDLEGSEEVLVNSSVRLLDLAYNHFRGPFPKPPL-----SINLL 390

Query:   119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR-SLEAIYMSKCNFSGQI 177
                +  F G +P    N + L  L L +NN +G +   + + + SL  + + K N  G +
Sbjct:   391 SAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSL 450

Query:   178 TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQXXXXXXXXXXXXTGFDQHLV 237
                  +   L  LD+  N      ++ GK+ + LL+ +M             T F   L 
Sbjct:   451 PDIFSDGALLRTLDVGYN------QLTGKLPRSLLNCSMLRFVSVDHNKIKDT-FPFWLK 503

Query:   238 LLP-------------GNNEEPRTG-CGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKI- 282
              LP             G    P  G   F KLRI+++SDN FTG LP   F+ W A  + 
Sbjct:   504 ALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPPNYFVNWEASSLQ 563

Query:   283 VNASELRYLQDVLSPSGKXXXXXXXXXXXXNIKGRMMAYNKIPDILAGIILSNKSFDGAI 342
             +N     Y+ D  +P                 KG  M   K+    A I  S    +G I
Sbjct:   564 MNEDGRIYMGDYNNP-----YYIYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQI 618

Query:   343 PASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
             P SI  LK               IP  L N+T LESLDLS N+ SG IP  L  L+FLA+
Sbjct:   619 PESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFLAY 678

Query:   403 FNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSE 459
              +V+ N L G IPQG Q      +SF+GN+GLCG PL   C +   P  ++  E  E
Sbjct:   679 ISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSCFAPPTPQPKEEDEDEE 735

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 7.7e-35, P = 7.7e-35
 Identities = 122/408 (29%), Positives = 187/408 (45%)

Query:    63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDF----NSSEIQPEIINLSCSLKLL 118
             ++ L++S++ + G +     L+ L  L ++NL+ N F     S+++    I    +++ L
Sbjct:   527 MLTLDISNNKIKGQV--PGWLWMLPVLNYVNLSNNTFIGFERSTKLGLTSIQEPPAMRQL 584

Query:   119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRS--LEAIYMSKCNFSGQ 176
                +  F G +P  I     L  L    N F+G +   +GN++S  L+A+ +     SG 
Sbjct:   585 FCSNNNFTGNIPSFICELPYLSTLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGL 644

Query:   177 ITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDP-NMQXXXXXXXXXXXXTGFDQH 235
             +  ++     L+ LD+  N   G +      H   L   N++            +   + 
Sbjct:   645 LPENI--FESLISLDVGHNQLVGKLP-RSLSHISSLGLLNVESNKISDTFPLWLSSLQEL 701

Query:   236 LVLLPGNNE--EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD 293
              VL+  +N    P     FSKLRIID+S N+F G LP+  F+ W AM  ++ +E +   +
Sbjct:   702 QVLVLRSNAFYGPIEKTQFSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGE 761

Query:   294 VLSPSGKXXXXXXXXXXXXNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKXXX 353
              +S                  KG  M   ++  +   I  S   F+G IP SI  LK   
Sbjct:   762 TMSNMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELH 821

Query:   354 XXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
                         I S +GNL  LESLD+S NK SG IPQ+L +LT+LA+ N S N L GL
Sbjct:   822 VLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGL 881

Query:   414 IPQGKQFATFDNTSFDGNSGLCGKPLSKGCE-SGEAPSNEDHTEGSEE 460
             +P G QF T   +SF+ N GL G  L K C+  G+ P   D     EE
Sbjct:   882 LPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEE 929

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	517
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-22
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  130 bits (329), Expect = 4e-32
 Identities = 126/413 (30%), Positives = 193/413 (46%), Gaps = 65/413 (15%)

Query: 6   HDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVK 65
           H +E   LL FK S           D    +++W     + D C W G+ CN N+  VV 
Sbjct: 27  HAEELELLLSFKSS---------INDPLKYLSNWNS---SADVCLWQGITCN-NSSRVVS 73

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125
           ++LS   + G I  SS++++L +++ +NL+ N   S  I  +I   S SL+ L+L +  F
Sbjct: 74  IDLSGKNISGKI--SSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 126 WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLT 185
            G +P   G+   L+ L L  N  SG++   IG+  SL+ + +      G+I +SL NLT
Sbjct: 131 TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 186 ELVVLDMAQNSYGGTMEIE-GKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244
            L  L +A N   G +  E G+         M++L  + L +N L+G            E
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQ---------MKSLKWIYLGYNNLSG------------E 227

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
            P    G + L  +DL  N  TG +PS          + N   L+Y            + 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPS---------SLGNLKNLQY------------LF 266

Query: 305 TYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQG 364
            Y   L+  I   + +  K    L  + LS+ S  G IP  +  L+ L++L+L +NN  G
Sbjct: 267 LYQNKLSGPIPPSIFSLQK----LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322

Query: 365 HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
            IP  L +L  L+ L L +NKFSG IP+ L +   L   ++S N LTG IP+G
Sbjct: 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (293), Expect = 2e-27
 Identities = 102/371 (27%), Positives = 178/371 (47%), Gaps = 44/371 (11%)

Query: 82  SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141
           S++ L  L  L+L+ N   S EI PE++    +L++L L S  F GK+P ++ +  RLQ 
Sbjct: 279 SIFSLQKLISLDLSDN-SLSGEI-PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTM 201
           L L  N FSG++  ++G   +L  + +S  N +G+I   L +   L  L +  NS     
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS----- 391

Query: 202 EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRII--- 258
            +EG++ K L     ++L  + L  N  +G            E P     F+KL ++   
Sbjct: 392 -LEGEIPKSLGA--CRSLRRVRLQDNSFSG------------ELPS---EFTKLPLVYFL 433

Query: 259 DLSDNRFTGKLPSKSFLCWN--AMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMN--- 313
           D+S+N   G++ S+    W+  ++++++ +  ++   +    G   +   D  L+ N   
Sbjct: 434 DISNNNLQGRINSRK---WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD--LSRNQFS 488

Query: 314 --IKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLG 371
             +  ++ + +++  +     LS     G IP  +S+ K L  L+L +N L G IP+   
Sbjct: 489 GAVPRKLGSLSELMQLK----LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 372 NLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGN 431
            +  L  LDLS N+ SG IP+ L  +  L   N+S N+L G +P    F   + ++  GN
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Query: 432 SGLCGKPLSKG 442
             LCG   + G
Sbjct: 605 IDLCGGDTTSG 615

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (254), Expect = 1e-22
 Identities = 99/357 (27%), Positives = 152/357 (42%), Gaps = 85/357 (23%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125
           L L+ + L G I     L ++  L+W+ L  N+  S EI  EI  L+ SL  LDL     
Sbjct: 193 LTLASNQLVGQI--PRELGQMKSLKWIYLGYNNL-SGEIPYEIGGLT-SLNHLDLVYNNL 248

Query: 126 WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLT 185
            G +P S+GN   LQ+L+L                      Y +K   SG I  S+ +L 
Sbjct: 249 TGPIPSSLGNLKNLQYLFL----------------------YQNK--LSGPIPPSIFSLQ 284

Query: 186 ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEE 245
           +L+ LD++ NS  G  EI   V +      +QNL  L+L  N  TG            + 
Sbjct: 285 KLISLDLSDNSLSG--EIPELVIQ------LQNLEILHLFSNNFTG------------KI 324

Query: 246 PRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTT 305
           P       +L+++ L  N+F+G++P       N  K  N                  +T 
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPK------NLGKHNN------------------LTV 360

Query: 306 YDYLLTMNIKGRMMAYNKIPDILAG------IILSNKSFDGAIPASISNLKGLQVLNLHN 359
            D L T N+ G       IP+ L        +IL + S +G IP S+   + L+ + L +
Sbjct: 361 LD-LSTNNLTGE------IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 360 NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
           N+  G +PS    L  +  LD+SNN   GRI  +  ++  L   +++ N   G +P 
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 98.7 bits (246), Expect = 9e-22
 Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386
            + G+ L N+   G IP  IS L+ LQ +NL  N+++G+IP  LG++T+LE LDLS N F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 387 SGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD--GNSGLCGKPLSKGCE 444
           +G IP+ L +LT L   N++ N L+G +P           SF+   N+GLCG P  + C 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538

Query: 445 S 445
            
Sbjct: 539 P 539

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 51  WDGVHC--NKNTGH--VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP 106
           W G  C  +   G   +  L L +  L G I +  S  KL HL+ +NL+  +     I P
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLS-GNSIRGNIPP 460

Query: 107 EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIG 158
            + +++ SL++LDL    F G +P S+G  T L+ L L  N+ SG +  ++G
Sbjct: 461 SLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 29/82 (35%), Positives = 46/82 (56%)

Query: 118 LDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI 177
           L L + G  G +P+ I     LQ + L  N+  G++  S+G++ SLE + +S  +F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 178 TSSLRNLTELVVLDMAQNSYGG 199
             SL  LT L +L++  NS  G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 10/52 (19%)

Query: 6  HDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCN 57
           +D+R ALL FK S           D    ++SW P   + D CSW GV C+
Sbjct: 1  LNDDRDALLAFKSS--------LNGDPSGALSSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 331 IILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386
           + LSN         +   L  L+VL+L  NNL    P     L +L SLDLS N  
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 68/275 (24%), Positives = 116/275 (42%), Gaps = 42/275 (15%)

Query: 94  LALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDL 153
           L L++ N ++I P I  L  +LK LDL        +P  + N   L+ L L FN+ S DL
Sbjct: 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DL 178

Query: 154 LGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLD 213
              + NL +L  + +S    S  +   +  L+ L  LD++ NS    +E+   +      
Sbjct: 179 PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI---IELLSSLS----- 229

Query: 214 PNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT-----GK 268
            N++NL+ L LS+N L    + +  L               L  +DLS+N+ +     G 
Sbjct: 230 -NLKNLSGLELSNNKLEDLPESIGNLSN-------------LETLDLSNNQISSISSLGS 275

Query: 269 LPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDIL 328
           L +   L  +   + NA  L  L  +L      L+ T        ++ ++ +     +IL
Sbjct: 276 LTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK-----ALELKLNSILLNNNIL 330

Query: 329 AGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ 363
           +    S+       P ++S L+ L  L   +N L 
Sbjct: 331 SNGETSS-------PEALSILESLNNLWTLDNALD 358

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 351 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYL 410
            L+ L+L NN L          L NL+ LDLS N  +   P+    L  L   ++S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387
             L+ L+L NN +   +P  L NL NLE+LDLS NK +
Sbjct: 1   TNLETLDLSNNQITD-LPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 144 LGFNN--FSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTM 201
           LG +N    G +   I  LR L++I +S  +  G I  SL ++T L VLD++ NS+ G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 202 -EIEGKVHKWLLDPNMQNLNALNLSHNLLTG 231
            E  G+         + +L  LNL+ N L+G
Sbjct: 483 PESLGQ---------LTSLRILNLNGNSLSG 504

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	517
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
PLN03150	623	hypothetical protein; Provisional	99.65
PLN03150	623	hypothetical protein; Provisional	99.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.63
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.62
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.92
PRK15386	426	type III secretion protein GogB; Provisional	97.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.08
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.93
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.58
KOG4341	483	consensus F-box protein containing LRR [General fu	96.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.54
KOG4308	478	consensus LRR-containing protein [Function unknown	95.24
KOG4308	478	consensus LRR-containing protein [Function unknown	94.93
KOG4341	483	consensus F-box protein containing LRR [General fu	94.44
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.42
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.78
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.16
smart00370	26	LRR Leucine-rich repeats, outliers.	92.16
smart00370	26	LRR Leucine-rich repeats, outliers.	92.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.14
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.05
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.17
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	83.46
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	83.21

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.8e-45  Score=409.78  Aligned_cols=415  Identities=31%  Similarity=0.511  Sum_probs=259.1

Q ss_pred             chHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCccccc
Q 036049            6 HDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYK   85 (517)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~   85 (517)
                      +++|+.||++||+++.++.         ..+.+|+.   ..+||.|.|++|.. .++|+.|+|++|.+++..+.  .+..
T Consensus        27 ~~~~~~~l~~~~~~~~~~~---------~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~   91 (968)
T PLN00113         27 HAEELELLLSFKSSINDPL---------KYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFR   91 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCc---------ccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhC
Confidence            5689999999999986543         25789976   57899999999975 36899999999988877765  7777


Q ss_pred             CCCCCEEEcCCCCCCCCCCchhhh-hcccCCcEEEccCCCC----------------------cccCCccCCCCCCCcEE
Q 036049           86 LVHLEWLNLALNDFNSSEIQPEII-NLSCSLKLLDLRSCGF----------------------WGKVPHSIGNFTRLQFL  142 (517)
Q Consensus        86 l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~l----------------------~~~~p~~~~~l~~L~~L  142 (517)
                      +++|++|+|++|++.+. +|..++ .+. +|++|+|++|.+                      .+.+|..++++++|++|
T Consensus        92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         92 LPYIQTINLSNNQLSGP-IPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCCEEECCCCccCCc-CChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence            77777777777777653 555554 222 444444443333                      23344444555555555


Q ss_pred             EccCCcccccccccccCCccccEEEccc------------------------ccccccCchhhhcCCcccccccccccCc
Q 036049          143 YLGFNNFSGDLLGSIGNLRSLEAIYMSK------------------------CNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~------------------------n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      ++++|.+.+.+|..|+++++|++|++++                        |.+++.+|..+.++++|++|++++|.+.
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            5555554444444444444444444444                        4444444444444444444444444433


Q ss_pred             cee------------------cccccccccccc----------------------ccCCCCCeEeccCCcc---------
Q 036049          199 GTM------------------EIEGKVHKWLLD----------------------PNMQNLNALNLSHNLL---------  229 (517)
Q Consensus       199 ~~~------------------~~~~~~~~~~~~----------------------~~l~~L~~L~Ls~n~l---------  229 (517)
                      +..                  .+.+.+|..+..                      ..+++|++|++++|.+         
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            211                  011112222211                      0022222222222222         


Q ss_pred             ---------------cccCCCC-----CC-------------CC---------------CC---CCCCCCCCCCCcccEE
Q 036049          230 ---------------TGFDQHL-----VL-------------LP---------------GN---NEEPRTGCGFSKLRII  258 (517)
Q Consensus       230 ---------------~~~~~~~-----~l-------------l~---------------~~---~~~~~~~~~l~~L~~L  258 (517)
                                     ++..+..     .+             ++               ++   ...+..+..+++|+.|
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L  409 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV  409 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence                           2111100     00             00               10   1223345667788888


Q ss_pred             EccCCcCCCCCChhhhhcccccceeccCcccccccccCC-------------Ccccc-----hhhhccceeee-----ec
Q 036049          259 DLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSP-------------SGKLL-----MTTYDYLLTMN-----IK  315 (517)
Q Consensus       259 ~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~-------------~~~~~-----~~~~~~~~~~~-----~~  315 (517)
                      ++++|++++.+|. .+..++.|+.++++++.........             .+...     ......+..+.     +.
T Consensus       410 ~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~  488 (968)
T PLN00113        410 RLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFS  488 (968)
T ss_pred             ECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccC
Confidence            8888888776664 3667777777777664322110000             00000     00001111111     12


Q ss_pred             CccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccc
Q 036049          316 GRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV  395 (517)
Q Consensus       316 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  395 (517)
                      +..+......+.|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+.
T Consensus       489 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  568 (968)
T PLN00113        489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG  568 (968)
T ss_pred             CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence            22222233466788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049          396 ELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       396 ~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      .+++|+.|++++|++++.+|...++.++...++.|||.+|+.+
T Consensus       569 ~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999899999999999999999754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=280.51  Aligned_cols=353  Identities=19%  Similarity=0.206  Sum_probs=220.3

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      ...+.||+++|.+......  .|.++++|+.+++.+|.++.  +|....... +|+.|+|.+|.|+..-.+.+..++.|+
T Consensus        78 ~~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sg-hl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESG-HLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             cceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhh--ccccccccc-ceeEEeeeccccccccHHHHHhHhhhh
Confidence            4678899999999877665  78889988888888888876  564433333 566666666666554445555555555


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      .||||.|.|+...-.+|..-.++++|+|++|+|+......|.++.+|.+|.|+.|+++       .+|...++ ++++|+
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-------tLp~r~Fk-~L~~L~  224 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-------TLPQRSFK-RLPKLE  224 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-------ccCHHHhh-hcchhh
Confidence            5555555555433334444445555555555555444445555555555555555554       34433333 244555


Q ss_pred             eEeccCCcc------------------------cccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhc
Q 036049          221 ALNLSHNLL------------------------TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLC  276 (517)
Q Consensus       221 ~L~Ls~n~l------------------------~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  276 (517)
                      .|+|..|+|                        ..+...            .|..+.++++|+|+.|++. .+...++-+
T Consensus       225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG------------~Fy~l~kme~l~L~~N~l~-~vn~g~lfg  291 (873)
T KOG4194|consen  225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG------------AFYGLEKMEHLNLETNRLQ-AVNEGWLFG  291 (873)
T ss_pred             hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc------------ceeeecccceeecccchhh-hhhcccccc
Confidence            555555544                        433322            3445556666666666665 444455555


Q ss_pred             ccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEe
Q 036049          277 WNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLN  356 (517)
Q Consensus       277 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  356 (517)
                      ++.|+.|+++++..-.................+....+.......+..+..|++|.|++|.+...-...|..+++|++||
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld  371 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD  371 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence            66666666655322111111110000111112222233333334444577788888888888866666788889999999


Q ss_pred             CcCccccccCCh---hccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCC
Q 036049          357 LHNNNLQGHIPS---CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSG  433 (517)
Q Consensus       357 Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~  433 (517)
                      |++|.|++.+.+   .|.+|++|+.|+|.+|+|....-..|..++.|++|||.+|.|...-|+...-..+..+-+..-.+
T Consensus       372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSF  451 (873)
T ss_pred             CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccce
Confidence            999998866654   47789999999999999986666789999999999999999998888764444777777888889


Q ss_pred             CCCCCC
Q 036049          434 LCGKPL  439 (517)
Q Consensus       434 ~c~~~~  439 (517)
                      +|||.+
T Consensus       452 lCDCql  457 (873)
T KOG4194|consen  452 LCDCQL  457 (873)
T ss_pred             EEeccH
Confidence            999976

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=4.1e-31  Score=296.59  Aligned_cols=335  Identities=27%  Similarity=0.371  Sum_probs=218.7

Q ss_pred             CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCC-CCCCCcEEEccCCcccccccccccCCccccE
Q 036049           87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIG-NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA  165 (517)
Q Consensus        87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~  165 (517)
                      .+++.|+|++|.+.+. +++.+..+. +|++|+|++|.+.+.+|..+. .+++|++|+|++|.+++.+|.  +.+++|++
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~-~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLP-YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCC-CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence            4789999999999886 677777777 999999999999888887654 889999999999988876664  45778888


Q ss_pred             EEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCC-----C--
Q 036049          166 IYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV-----L--  238 (517)
Q Consensus       166 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----l--  238 (517)
                      |+|++|.+++.+|..++++++|++|++++|.+.+      .+|..+..  +++|++|++++|.+++..+...     +  
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG------KIPNSLTN--LTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccc------cCChhhhh--CcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            8888888877778888888888888888887763      56666665  7777777777777765433210     0  


Q ss_pred             --CCCC---CCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeee
Q 036049          239 --LPGN---NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMN  313 (517)
Q Consensus       239 --l~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  313 (517)
                        +.++   ...+..+.++++|++|++++|.+++.+|. .+..+++|+.|+++.+....................+....
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence              0000   01122234555555555555555544443 24555555555555432211100000000000001111111


Q ss_pred             ecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccc
Q 036049          314 IKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ  393 (517)
Q Consensus       314 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  393 (517)
                      +.+..+......++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            22222222233556777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCC
Q 036049          394 LVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGL  434 (517)
Q Consensus       394 l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~  434 (517)
                      +..+++|+.|++++|++++.+|.. ..+..++.+++.+|...
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence            777777888888888777777653 34567777778877543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=258.51  Aligned_cols=342  Identities=20%  Similarity=0.169  Sum_probs=224.7

Q ss_pred             cEEEEEcCCCCceeeeCCCccccc--CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYK--LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      ..+.||.+.+.+......  .+..  .+.-+.||+++|++... -+..+.++. +|+++++.+|.+ ..+|...+...+|
T Consensus        53 ~~~lldcs~~~lea~~~~--~l~g~lp~~t~~LdlsnNkl~~i-d~~~f~nl~-nLq~v~l~~N~L-t~IP~f~~~sghl  127 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKS--RLKGFLPSQTQTLDLSNNKLSHI-DFEFFYNLP-NLQEVNLNKNEL-TRIPRFGHESGHL  127 (873)
T ss_pred             CceeeecCcccccccccc--ccCCcCccceeeeeccccccccC-cHHHHhcCC-cceeeeeccchh-hhcccccccccce
Confidence            456677777777543211  2222  22456799999999874 344555666 999999999999 6789876777789


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      +.|+|.+|.|+..-.++++.++.|+.|||+.|.|+...-..|..-.++++|+|++|.|+       .+....+. .+.+|
T Consensus       128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-------~l~~~~F~-~lnsL  199 (873)
T KOG4194|consen  128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-------TLETGHFD-SLNSL  199 (873)
T ss_pred             eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-------cccccccc-ccchh
Confidence            99999999999888889999999999999999999666677877789999999999998       33333332 27899


Q ss_pred             CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccc--ccccccC-
Q 036049          220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR--YLQDVLS-  296 (517)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~--~l~~~~~-  296 (517)
                      .+|.|+.|+++.+++.            .|..+++|+.|+|..|+|. .+....|..+++|+.+.+..+.  .+++... 
T Consensus       200 ~tlkLsrNrittLp~r------------~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy  266 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQR------------SFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY  266 (873)
T ss_pred             eeeecccCcccccCHH------------Hhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence            9999999999998765            3566777777777777775 4444456667777766655422  2221111 


Q ss_pred             CCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCC
Q 036049          297 PSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL  376 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  376 (517)
                      +..+.   ....+....+......+.-.+..|+.|++|.|.|...-+..++..++|++|+|++|+|+...+..|..+..|
T Consensus       267 ~l~km---e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  267 GLEKM---EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             eeccc---ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            00000   000011111111111112225567777777777776666666666777777777777775556666666666


Q ss_pred             CeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC----CcCCccCCCcccCCC
Q 036049          377 ESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG----KQFATFDNTSFDGNS  432 (517)
Q Consensus       377 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~----~~~~~l~~~~~~~Np  432 (517)
                      ++|+|++|+|...-...|..+.+|++|||++|.|+..+.+.    ..++.++.+.+.||.
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence            66666666666544455666666666666666666665543    234444455555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.2e-31  Score=258.27  Aligned_cols=324  Identities=23%  Similarity=0.302  Sum_probs=268.1

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .++++|.+++|++.....   .+..++.|+.+++..|++....+|+.++.+. .|+.||||+|++ ...|..+..-+++-
T Consensus        55 qkLEHLs~~HN~L~~vhG---ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~-dLt~lDLShNqL-~EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLISVHG---ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLK-DLTILDLSHNQL-REVPTNLEYAKNSI  129 (1255)
T ss_pred             hhhhhhhhhhhhhHhhhh---hhccchhhHHHhhhccccccCCCCchhcccc-cceeeecchhhh-hhcchhhhhhcCcE
Confidence            478899999999975543   6788999999999999998878999999999 999999999999 78999999999999


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      .|+||+|+|..+...-|.++..|-+|||++|++. .+|+.+..+..|++|+|++|.+... .+ ..+|+      +++|+
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf-QL-rQLPs------mtsL~  200 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHF-QL-RQLPS------MTSLS  200 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHH-HH-hcCcc------chhhh
Confidence            9999999999544445779999999999999998 7888899999999999999987510 00 13443      88999


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK  300 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  300 (517)
                      +|.+++.+-+-.           ..|.++..+.+|+.+|+|.|.+. .+|+ ..-.+.+|+.|+++.+........    
T Consensus       201 vLhms~TqRTl~-----------N~Ptsld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~~~----  263 (1255)
T KOG0444|consen  201 VLHMSNTQRTLD-----------NIPTSLDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELNMT----  263 (1255)
T ss_pred             hhhcccccchhh-----------cCCCchhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceeeeecc----
Confidence            999998764422           11334577899999999999998 7775 466788999999888443321110    


Q ss_pred             cchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccc-ccCChhccCCCCCCee
Q 036049          301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLGNLTNLESL  379 (517)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L  379 (517)
                                           ...-..+++|++|.|+++ .+|..+..++.|+.|++.+|+++ .-+|+.++.+.+|+.+
T Consensus       264 ---------------------~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  264 ---------------------EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             ---------------------HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence                                 011457899999999999 88999999999999999999886 4589999999999999


Q ss_pred             eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049          380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      ...+|.+. ..|+.++.+..|+.|.|+.|++.+.+.....+..+..+++..||.+.-+|
T Consensus       322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             Hhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            99999998 89999999999999999999998776666788889999999999876443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=1.2e-30  Score=254.22  Aligned_cols=317  Identities=20%  Similarity=0.315  Sum_probs=254.9

Q ss_pred             CcEEEEEcCCCCce-eeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           61 GHVVKLNLSHSCLF-GSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      +-|+.+|+++|.++ +.+|.  ....++.++.|.|...++..  +|..+..+. +|++|.+++|++ ..+-..+..++.|
T Consensus         7 pFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~~--vPeEL~~lq-kLEHLs~~HN~L-~~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLEQ--VPEELSRLQ-KLEHLSMAHNQL-ISVHGELSDLPRL   80 (1255)
T ss_pred             ceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhhhh--ChHHHHHHh-hhhhhhhhhhhh-Hhhhhhhccchhh
Confidence            45888999999998 46666  88899999999999999977  899999999 999999999998 4566678899999


Q ss_pred             cEEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCC
Q 036049          140 QFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN  218 (517)
Q Consensus       140 ~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~  218 (517)
                      +.+++..|++.. -+|..+-.|..|+.|||++|++. ..|..+..-+++-+|+|++|+|.       .||..++. +++.
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-------tIPn~lfi-nLtD  151 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-------TIPNSLFI-NLTD  151 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-------cCCchHHH-hhHh
Confidence            999999998863 46778889999999999999999 78999999999999999999997       78877765 4888


Q ss_pred             CCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCC
Q 036049          219 LNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS  298 (517)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~  298 (517)
                      |-+||||+|++..++|..             ..+.+|++|+|++|.+. ..--..+..+++|+.|.+++.+.....++. 
T Consensus       152 LLfLDLS~NrLe~LPPQ~-------------RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-  216 (1255)
T KOG0444|consen  152 LLFLDLSNNRLEMLPPQI-------------RRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-  216 (1255)
T ss_pred             HhhhccccchhhhcCHHH-------------HHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCC-
Confidence            999999999999987764             67889999999999876 322222334555666666653222211111 


Q ss_pred             cccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCe
Q 036049          299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLES  378 (517)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  378 (517)
                                            ....+.+|..+|+|.|++. .+|+.+-.+++|+.|+||+|+|+ .+.-..+.-.+|++
T Consensus       217 ----------------------sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  217 ----------------------SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLET  272 (1255)
T ss_pred             ----------------------chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence                                  1122677889999999998 78999999999999999999998 55556667788999


Q ss_pred             eeCCCCcccccCccccccCCCCCEEeccCCccc--ccCCCCCcCCccCCCcccCCC
Q 036049          379 LDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT--GLIPQGKQFATFDNTSFDGNS  432 (517)
Q Consensus       379 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~--~~~p~~~~~~~l~~~~~~~Np  432 (517)
                      |+||.|+++ .+|..++.+++|+.|++.+|+++  |++...+.+..++.+...+|.
T Consensus       273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~  327 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK  327 (1255)
T ss_pred             hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence            999999998 88999999999999999999876  444444666677776666664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=1.7e-30  Score=241.28  Aligned_cols=348  Identities=23%  Similarity=0.312  Sum_probs=241.7

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      .+..++..+|+++. .|+  ++.++.+|..|++.+|++..  +|+....+. .|++||...|-+ +.+|..++.+.+|+.
T Consensus       138 ~l~dl~~~~N~i~s-lp~--~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~-~L~~ld~~~N~L-~tlP~~lg~l~~L~~  210 (565)
T KOG0472|consen  138 DLEDLDATNNQISS-LPE--DMVNLSKLSKLDLEGNKLKA--LPENHIAMK-RLKHLDCNSNLL-ETLPPELGGLESLEL  210 (565)
T ss_pred             hhhhhhcccccccc-Cch--HHHHHHHHHHhhccccchhh--CCHHHHHHH-HHHhcccchhhh-hcCChhhcchhhhHH
Confidence            35667777777763 444  67778888888888888877  677777766 899999999888 788889999999999


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccccCchh-hhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS-LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      |||..|+|. .+| .|..+..|++|+++.|+|. .+|.. ..++++|.+||+.+|+++       ++|..+..  +.+|+
T Consensus       211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------e~Pde~cl--LrsL~  278 (565)
T KOG0472|consen  211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------EVPDEICL--LRSLE  278 (565)
T ss_pred             HHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------cCchHHHH--hhhhh
Confidence            999999998 567 7999999999999999998 55554 448999999999999998       88998888  89999


Q ss_pred             eEeccCCcccccCCCCCC--------------------CC-----------------------C--------CCCCCCCC
Q 036049          221 ALNLSHNLLTGFDQHLVL--------------------LP-----------------------G--------NNEEPRTG  249 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~l--------------------l~-----------------------~--------~~~~~~~~  249 (517)
                      +||+|+|.|++++....-                    +.                       |        ........
T Consensus       279 rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~  358 (565)
T KOG0472|consen  279 RLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI  358 (565)
T ss_pred             hhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence            999999999998765410                    00                       0        00001111


Q ss_pred             CCCCcccEEEccCCcCCCCCChhhhhccc--ccceeccCcccccccccCCCcccchhhh--ccceeeeecCccccCCCch
Q 036049          250 CGFSKLRIIDLSDNRFTGKLPSKSFLCWN--AMKIVNASELRYLQDVLSPSGKLLMTTY--DYLLTMNIKGRMMAYNKIP  325 (517)
Q Consensus       250 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  325 (517)
                      ....+.+.|++++-+++ .+|.+.|..-.  -...++++..+... . +.... .....  .........+..+......
T Consensus       359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~e-l-Pk~L~-~lkelvT~l~lsnn~isfv~~~l~~l  434 (565)
T KOG0472|consen  359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCE-L-PKRLV-ELKELVTDLVLSNNKISFVPLELSQL  434 (565)
T ss_pred             hhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhh-h-hhhhH-HHHHHHHHHHhhcCccccchHHHHhh
Confidence            23345566666666665 56665554322  12233333311110 0 00000 00000  0001111222222333345


Q ss_pred             hhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049          326 DILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV  405 (517)
Q Consensus       326 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  405 (517)
                      ++|+.|+|++|-+. .+|..++.+..|+.||+|+|++. .+|..+..+..|+.+-.++|++....|+.+.++.+|..||+
T Consensus       435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            66777777777766 67777777777888888888777 77777777777777777778887666666899999999999


Q ss_pred             cCCcccccCCCCCcCCccCCCcccCCCCC
Q 036049          406 SDNYLTGLIPQGKQFATFDNTSFDGNSGL  434 (517)
Q Consensus       406 ~~N~l~~~~p~~~~~~~l~~~~~~~Np~~  434 (517)
                      .+|.+...+|..+....+..+.++|||+.
T Consensus       513 ~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  513 QNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CCCchhhCChhhccccceeEEEecCCccC
Confidence            99999988888888999999999999975

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=3e-27  Score=240.66  Aligned_cols=352  Identities=24%  Similarity=0.332  Sum_probs=195.4

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      ++++|||++|.+. ..|.  .+..+.+|+.|+++.|.|..  .|..+..+. +|++|+|.+|.+ ...|.++..+++|++
T Consensus        46 ~L~~l~lsnn~~~-~fp~--~it~l~~L~~ln~s~n~i~~--vp~s~~~~~-~l~~lnL~~n~l-~~lP~~~~~lknl~~  118 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPI--QITLLSHLRQLNLSRNYIRS--VPSSCSNMR-NLQYLNLKNNRL-QSLPASISELKNLQY  118 (1081)
T ss_pred             eeEEeeccccccc-cCCc--hhhhHHHHhhcccchhhHhh--Cchhhhhhh-cchhheeccchh-hcCchhHHhhhcccc
Confidence            4788888888875 4444  66677777777777777766  566666666 777777777766 566777777777777


Q ss_pred             EEccCCcccccccccccCC----------------------------------------ccccE-EEcccccccccCchh
Q 036049          142 LYLGFNNFSGDLLGSIGNL----------------------------------------RSLEA-IYMSKCNFSGQITSS  180 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l----------------------------------------~~L~~-L~L~~n~l~~~~p~~  180 (517)
                      |++++|++. .+|..+..+                                        ..|++ |+|.+|.+....-..
T Consensus       119 LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~  197 (1081)
T KOG0618|consen  119 LDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN  197 (1081)
T ss_pred             cccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence            777777443 112111100                                        11222 444444433000000


Q ss_pred             h---------------------------------------hcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049          181 L---------------------------------------RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA  221 (517)
Q Consensus       181 l---------------------------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~  221 (517)
                      +                                       .--.+|+++++++|+++       .+|+|+..  +.+|+.
T Consensus       198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-------~lp~wi~~--~~nle~  268 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-------NLPEWIGA--CANLEA  268 (1081)
T ss_pred             ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-------cchHHHHh--cccceE
Confidence            0                                       01136888999999887       78888888  899999


Q ss_pred             EeccCCcccccCCCCCCCC---------CC-CCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccc-cceeccCcccc
Q 036049          222 LNLSHNLLTGFDQHLVLLP---------GN-NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNA-MKIVNASELRY  290 (517)
Q Consensus       222 L~Ls~n~l~~~~~~~~ll~---------~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~-L~~L~l~~~~~  290 (517)
                      +++.+|.++.++.......         .. ...+....++++|++|||..|++. .+|...+..... +..++.+.+..
T Consensus       269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l  347 (1081)
T KOG0618|consen  269 LNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKL  347 (1081)
T ss_pred             ecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccc
Confidence            9999998876654331100         00 011223356788888888888886 777755544433 44444333111


Q ss_pred             cccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhc
Q 036049          291 LQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCL  370 (517)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  370 (517)
                      -.....+..........++....+.............|+.|+|++|.+.......+.++..|++|+||+|+++ .+|+.+
T Consensus       348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence            1000000000001111111111122222222222344444555555444322233444444555555555554 444445


Q ss_pred             cCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc-CCCCCcCCccCCCcccCCCCC
Q 036049          371 GNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL-IPQGKQFATFDNTSFDGNSGL  434 (517)
Q Consensus       371 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~-~p~~~~~~~l~~~~~~~Np~~  434 (517)
                      ..++.|++|...+|++. ..| .+..++.|+.+|++.|+++.. +|.....++++.++++||+++
T Consensus       427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            55555555555555554 455 677889999999999999844 444444588999999999974

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=1.4e-27  Score=222.05  Aligned_cols=266  Identities=30%  Similarity=0.423  Sum_probs=213.9

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      .+..+.+++|.++...+   .+.++..|.+|++++|++..  +|+.+..+. .++.|+.++|++ ..+|+.++.+.+|+.
T Consensus        46 ~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~--lp~aig~l~-~l~~l~vs~n~l-s~lp~~i~s~~~l~~  118 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQ--LPAAIGELE-ALKSLNVSHNKL-SELPEQIGSLISLVK  118 (565)
T ss_pred             chhhhhhccCchhhccH---hhhcccceeEEEeccchhhh--CCHHHHHHH-HHHHhhcccchH-hhccHHHhhhhhhhh
Confidence            36788999999875443   67889999999999999987  899999998 999999999999 678889999999999


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA  221 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~  221 (517)
                      |++++|.+. .+|++++.+..|+.|+..+|+++ ..|+.+..+.+|..+++.+|++.       .+|+....  ++.|++
T Consensus       119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-------~l~~~~i~--m~~L~~  187 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-------ALPENHIA--MKRLKH  187 (565)
T ss_pred             hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-------hCCHHHHH--HHHHHh
Confidence            999999998 78889999999999999999998 77888899999999999999987       67776666  888999


Q ss_pred             EeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCccc
Q 036049          222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL  301 (517)
Q Consensus       222 L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  301 (517)
                      ||...|.++.+++..             +.+.+|..|++..|++. .+|+  |.+                         
T Consensus       188 ld~~~N~L~tlP~~l-------------g~l~~L~~LyL~~Nki~-~lPe--f~g-------------------------  226 (565)
T KOG0472|consen  188 LDCNSNLLETLPPEL-------------GGLESLELLYLRRNKIR-FLPE--FPG-------------------------  226 (565)
T ss_pred             cccchhhhhcCChhh-------------cchhhhHHHHhhhcccc-cCCC--CCc-------------------------
Confidence            999999888876653             77888888888888887 6663  222                         


Q ss_pred             chhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCccccc-CCCCCCeEeCcCccccccCChhccCCCCCCeee
Q 036049          302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS-NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD  380 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  380 (517)
                                             .+.|.++.++.|.+. .+|.+.. ++++|..|||..|+++ +.|+.+.-+++|+.||
T Consensus       227 -----------------------cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  227 -----------------------CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD  281 (565)
T ss_pred             -----------------------cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence                                   345666667777766 4554444 6777777777777777 6777777777777777


Q ss_pred             CCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049          381 LSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       381 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                      +|+|.|+ .+|.+++++ .|+.|-+.||++.+.
T Consensus       282 lSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  282 LSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             ccCCccc-cCCcccccc-eeeehhhcCCchHHH
Confidence            7777777 566677777 677777777777543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-24  Score=201.82  Aligned_cols=96  Identities=22%  Similarity=0.262  Sum_probs=83.5

Q ss_pred             ccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-CcCCc
Q 036049          344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-KQFAT  422 (517)
Q Consensus       344 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~  422 (517)
                      ..|..+++|++|+|++|+|+++-+.+|..+..+++|.|..|+|...-...|.++..|+.|+|.+|+|+..-|.. .....
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            45888999999999999999888889999999999999999998777778999999999999999999888754 34555


Q ss_pred             cCCCcccCCCCCCCCCC
Q 036049          423 FDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       423 l~~~~~~~Np~~c~~~~  439 (517)
                      +..+.+-+|||.|+|.+
T Consensus       348 l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  348 LSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             eeeeehccCcccCccch
Confidence            67778899999999866

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=2.2e-25  Score=227.17  Aligned_cols=359  Identities=24%  Similarity=0.283  Sum_probs=241.3

Q ss_pred             CCcccceeecC-CCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCC
Q 036049           47 DCCSWDGVHCN-KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF  125 (517)
Q Consensus        47 ~~C~w~gv~c~-~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l  125 (517)
                      .+|.-+-+.-. .....++.|+++.|.+-...-+  ...+.-+|+.||+++|.+..  +|..+..+. +|+.|+++.|-|
T Consensus         6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~--~~~~~v~L~~l~lsnn~~~~--fp~~it~l~-~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    6 SDEQLELIPEQILNNEALQILNLRRNSLLSRPLE--FVEKRVKLKSLDLSNNQISS--FPIQITLLS-HLRQLNLSRNYI   80 (1081)
T ss_pred             ccccCcccchhhccHHHHHhhhccccccccCchH--HhhheeeeEEeecccccccc--CCchhhhHH-HHhhcccchhhH
Confidence            34554444332 1123488899999877543222  45555569999999999987  888888888 999999999999


Q ss_pred             cccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccccccc-Cc--cee-
Q 036049          126 WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNS-YG--GTM-  201 (517)
Q Consensus       126 ~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~-l~--~~~-  201 (517)
                       ...|.+..++.+|++|.|.+|.+. .+|.++..+++|++|+++.|.+. .+|..+..++.++.+..++|. +.  |.. 
T Consensus        81 -~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~  157 (1081)
T KOG0618|consen   81 -RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS  157 (1081)
T ss_pred             -hhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence             678889999999999999999999 79999999999999999999988 667666666665555555551 00  000 


Q ss_pred             ---------cccccccccccc-----------------------------------------------------------
Q 036049          202 ---------EIEGKVHKWLLD-----------------------------------------------------------  213 (517)
Q Consensus       202 ---------~~~~~~~~~~~~-----------------------------------------------------------  213 (517)
                               .+.+.++..+..                                                           
T Consensus       158 ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~  237 (1081)
T KOG0618|consen  158 IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH  237 (1081)
T ss_pred             chhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc
Confidence                     000111111100                                                           


Q ss_pred             ccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhh------------------
Q 036049          214 PNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL------------------  275 (517)
Q Consensus       214 ~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------------------  275 (517)
                      +.-.+|+++++++|++++++             ..+..+.+|+.++..+|+++ .+|...+.                  
T Consensus       238 p~p~nl~~~dis~n~l~~lp-------------~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip  303 (1081)
T KOG0618|consen  238 PVPLNLQYLDISHNNLSNLP-------------EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP  303 (1081)
T ss_pred             cccccceeeecchhhhhcch-------------HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence            00123333333333333332             34577889999999999886 66654332                  


Q ss_pred             ----cccccceeccCcccc--cccccCCCcccchhhhc--cceeeeecCccccCCCchhhhhhhhCCCCCCcccCccccc
Q 036049          276 ----CWNAMKIVNASELRY--LQDVLSPSGKLLMTTYD--YLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS  347 (517)
Q Consensus       276 ----~l~~L~~L~l~~~~~--l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  347 (517)
                          .++.|+.|++..+..  ++.....   .......  ......+......-......|+.|++.+|.+++..-+.+.
T Consensus       304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~---v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~  380 (1081)
T KOG0618|consen  304 PFLEGLKSLRTLDLQSNNLPSLPDNFLA---VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV  380 (1081)
T ss_pred             CcccccceeeeeeehhccccccchHHHh---hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence                123333333332111  1100000   0000000  0000111111111223467899999999999998777889


Q ss_pred             CCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCc
Q 036049          348 NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTS  427 (517)
Q Consensus       348 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~  427 (517)
                      ++++|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+..++.|++|...+|+|... |+..+++.+..+|
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-PELAQLPQLKVLD  458 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-hhhhhcCcceEEe
Confidence            9999999999999998444456889999999999999999 8889999999999999999999955 5878888888888


Q ss_pred             ccCCC
Q 036049          428 FDGNS  432 (517)
Q Consensus       428 ~~~Np  432 (517)
                      ++-|.
T Consensus       459 lS~N~  463 (1081)
T KOG0618|consen  459 LSCNN  463 (1081)
T ss_pred             cccch
Confidence            88774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=2e-22  Score=211.72  Aligned_cols=262  Identities=22%  Similarity=0.248  Sum_probs=199.2

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      .-..|+++.+.++ .+|.  .+.  ++|+.|++++|+++.  +|..    .++|++|++++|.++ .+|..   .++|+.
T Consensus       202 ~~~~LdLs~~~Lt-sLP~--~l~--~~L~~L~L~~N~Lt~--LP~l----p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~  266 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPAL----PPELRTLEVSGNQLT-SLPVL---PPGLLE  266 (788)
T ss_pred             CCcEEEcCCCCCC-cCCc--chh--cCCCEEEccCCcCCC--CCCC----CCCCcEEEecCCccC-cccCc---ccccce
Confidence            3457899999998 4555  444  489999999999987  6642    349999999999995 56643   468999


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA  221 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~  221 (517)
                      |++++|.++ .+|..+   .+|+.|++++|+++ .+|..   .++|+.|++++|+++       .+|..     ..+|+.
T Consensus       267 L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-------~Lp~l-----p~~L~~  326 (788)
T PRK15387        267 LSIFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-------SLPAL-----PSELCK  326 (788)
T ss_pred             eeccCCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccc-------cCCCC-----cccccc
Confidence            999999998 456533   57889999999998 45543   478999999999997       45442     346888


Q ss_pred             EeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCccc
Q 036049          222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL  301 (517)
Q Consensus       222 L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  301 (517)
                      |++++|.+++++..                ..+|++|+|++|+++ .+|..    ..+|+.|+++++. +.         
T Consensus       327 L~Ls~N~L~~LP~l----------------p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~-L~---------  375 (788)
T PRK15387        327 LWAYNNQLTSLPTL----------------PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNR-LT---------  375 (788)
T ss_pred             cccccCcccccccc----------------ccccceEecCCCccC-CCCCC----Ccccceehhhccc-cc---------
Confidence            99999999876421                247999999999998 67642    2345555555421 11         


Q ss_pred             chhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049          302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL  381 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  381 (517)
                                        .+...+..|+.|++++|.+++ +|..   .++|+.|++++|+++ .+|...   .+|+.|++
T Consensus       376 ------------------~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~L  429 (788)
T PRK15387        376 ------------------SLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSV  429 (788)
T ss_pred             ------------------cCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhh
Confidence                              011124568999999999984 5543   367999999999998 567543   57889999


Q ss_pred             CCCcccccCccccccCCCCCEEeccCCcccccCCC
Q 036049          382 SNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ  416 (517)
Q Consensus       382 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  416 (517)
                      ++|+|+ .+|..+..+++|+.|++++|+|++..|.
T Consensus       430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            999998 7899999999999999999999988664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.88  E-value=2.6e-22  Score=212.16  Aligned_cols=314  Identities=18%  Similarity=0.216  Sum_probs=219.5

Q ss_pred             CchHhHHHHHHHhhcCCCCCCcccccCCCCCCCC----CCCCCCCCCCcccce----------------eecCCCCCcEE
Q 036049            5 CHDDERSALLQFKESRISGDFYAWKFDCRPTMAS----WKPEEGNVDCCSWDG----------------VHCNKNTGHVV   64 (517)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----w~~~~~~~~~C~w~g----------------v~c~~~~~~l~   64 (517)
                      -.++|...+.++.+.+..|.          .+.+    |+.   ++++|.-..                |.|..  +.|+
T Consensus        60 ~~~~~~~~~~~~~~~l~~p~----------~~~~~~~~~~~---~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt  124 (754)
T PRK15370         60 ASPEEIKSKFECLRMLAFPA----------YADNIQYSRGG---ADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVT  124 (754)
T ss_pred             CCHHHHHHHHHHHHHhcCCc----------hhhccccccCC---CCcccccCCcchhhheeeecCCceEEecCC--Cccc
Confidence            45578889999999887765          4455    876   678997654                45532  4566


Q ss_pred             EEEcCCCCceeeeCCC--------------------------ccc-----ccCCCCCEEEcCCCCCCCCCCchhhhhccc
Q 036049           65 KLNLSHSCLFGSINSS--------------------------SSL-----YKLVHLEWLNLALNDFNSSEIQPEIINLSC  113 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~--------------------------~~l-----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  113 (517)
                      .+..-+..........                          .++     +-..+...|+++++.++.  +|..+.   +
T Consensus       125 ~l~~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip---~  199 (754)
T PRK15370        125 YTRVTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP---E  199 (754)
T ss_pred             ccccccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc---c
Confidence            6655443221100000                          001     112357889999999887  776553   3


Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      .|+.|+|++|.+. .+|..+.  .+|++|++++|+++ .+|..+.  .+|+.|+|++|.+. .+|..+.  ++|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            8999999999995 5676554  58999999999998 5676554  47999999999998 6676664  579999999


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS  273 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  273 (517)
                      +|+++       .+|..+    .++|+.|++++|++++++...               .++|+.|++++|.++ .+|...
T Consensus       271 ~N~L~-------~LP~~l----~~sL~~L~Ls~N~Lt~LP~~l---------------p~sL~~L~Ls~N~Lt-~LP~~l  323 (754)
T PRK15370        271 HNKIS-------CLPENL----PEELRYLSVYDNSIRTLPAHL---------------PSGITHLNVQSNSLT-ALPETL  323 (754)
T ss_pred             CCccC-------cccccc----CCCCcEEECCCCccccCcccc---------------hhhHHHHHhcCCccc-cCCccc
Confidence            99887       556543    357999999999998764321               247899999999998 566543


Q ss_pred             hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049          274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ  353 (517)
Q Consensus       274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  353 (517)
                      .   ++|+.|+++++....                        .+.   .++++|+.|++++|+++ .+|..+.  ++|+
T Consensus       324 ~---~sL~~L~Ls~N~Lt~------------------------LP~---~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~  370 (754)
T PRK15370        324 P---PGLKTLEAGENALTS------------------------LPA---SLPPELQVLDVSKNQIT-VLPETLP--PTIT  370 (754)
T ss_pred             c---ccceeccccCCcccc------------------------CCh---hhcCcccEEECCCCCCC-cCChhhc--CCcC
Confidence            2   456666666532110                        000   12457888999999887 4666553  6899


Q ss_pred             eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc----ccCCCCCEEeccCCccc
Q 036049          354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL----VELTFLAFFNVSDNYLT  411 (517)
Q Consensus       354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~l~~N~l~  411 (517)
                      .|+|++|+++ .+|..+.  .+|+.|++++|++. .+|..+    ..++.+..|++.+|+++
T Consensus       371 ~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        371 TLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             EEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            9999999998 5666554  36889999999988 555544    34578889999999886

>PLN03210 Resistant to P

Probab=99.86  E-value=8.8e-21  Score=213.88  Aligned_cols=192  Identities=16%  Similarity=0.166  Sum_probs=115.1

Q ss_pred             CcEEEEEcCCCC------ceeeeCCCcccccCC-CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccC
Q 036049           61 GHVVKLNLSHSC------LFGSINSSSSLYKLV-HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSI  133 (517)
Q Consensus        61 ~~l~~L~Ls~n~------l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  133 (517)
                      .+++.|.+..+.      +...+|.  .+..++ +|+.|++.++.+..  +|..+ ... +|++|++++|.+ ..++..+
T Consensus       558 ~~L~~L~~~~~~~~~~~~~~~~lp~--~~~~lp~~Lr~L~~~~~~l~~--lP~~f-~~~-~L~~L~L~~s~l-~~L~~~~  630 (1153)
T PLN03210        558 RNLLFLKFYTKKWDQKKEVRWHLPE--GFDYLPPKLRLLRWDKYPLRC--MPSNF-RPE-NLVKLQMQGSKL-EKLWDGV  630 (1153)
T ss_pred             ccccEEEEecccccccccceeecCc--chhhcCcccEEEEecCCCCCC--CCCcC-Ccc-CCcEEECcCccc-ccccccc
Confidence            456666665442      2223333  444443 57777777777655  56554 334 777777777776 4566667


Q ss_pred             CCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccccccccc
Q 036049          134 GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLD  213 (517)
Q Consensus       134 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  213 (517)
                      ..+++|+.|+|+++.....+| .++.+++|++|+|++|.....+|..+.++++|+.|++++|...      +.+|..+ .
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L------~~Lp~~i-~  702 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL------EILPTGI-N  702 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc------CccCCcC-C
Confidence            777777777777765444555 3667777777777777655567777777777777777765322      1455433 2


Q ss_pred             ccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049          214 PNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE  287 (517)
Q Consensus       214 ~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~  287 (517)
                        +++|+.|++++|......+.               ...+|+.|++++|.+. .+|...  .+++|+.|.+..
T Consensus       703 --l~sL~~L~Lsgc~~L~~~p~---------------~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~  756 (1153)
T PLN03210        703 --LKSLYRLNLSGCSRLKSFPD---------------ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCE  756 (1153)
T ss_pred             --CCCCCEEeCCCCCCcccccc---------------ccCCcCeeecCCCccc-cccccc--cccccccccccc
Confidence              66777777777643322111               1345667777777665 555432  345555555443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.86  E-value=8.6e-21  Score=213.97  Aligned_cols=340  Identities=18%  Similarity=0.201  Sum_probs=222.2

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCC-----CCCchhhhhcccCCcEEEccCCCCcccCCccCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS-----SEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIG  134 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  134 (517)
                      +.+++.+.+....+........+|.++++|+.|.+..+....     ..+|..+..+..+|+.|++.++.+ ..+|..| 
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-  608 (1153)
T ss_pred             cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-
Confidence            346776666555544322222378999999999997664321     126777777766899999999998 6788877 


Q ss_pred             CCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccc
Q 036049          135 NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDP  214 (517)
Q Consensus       135 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  214 (517)
                      ...+|+.|++++|.+. .++..+..+++|++|+|+++.....+| .+..+++|++|++++|...      ..+|..+.. 
T Consensus       609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L------~~lp~si~~-  679 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL------VELPSSIQY-  679 (1153)
T ss_pred             CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc------cccchhhhc-
Confidence            5789999999999998 688889999999999999987555666 4888999999999997543      277888777 


Q ss_pred             cCCCCCeEeccCCc-ccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccccc
Q 036049          215 NMQNLNALNLSHNL-LTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD  293 (517)
Q Consensus       215 ~l~~L~~L~Ls~n~-l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~  293 (517)
                       +++|+.|++++|. ++.++..              .++++|+.|++++|...+.+|..    ..+|+.|+++..... .
T Consensus       680 -L~~L~~L~L~~c~~L~~Lp~~--------------i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        680 -LNKLEDLDMSRCENLEILPTG--------------INLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-E  739 (1153)
T ss_pred             -cCCCCEEeCCCCCCcCccCCc--------------CCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-c
Confidence             9999999999974 4443221              26789999999999766566642    356777777764311 1


Q ss_pred             ccCCCcccchhhhccceee-------eecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccC
Q 036049          294 VLSPSGKLLMTTYDYLLTM-------NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHI  366 (517)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  366 (517)
                       ++............+...       ............+++|+.|++++|...+.+|..++++++|+.|+|++|...+.+
T Consensus       740 -lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        740 -FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             -ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence             110000000000000000       000011111223567888888888777778888888888888888887544456


Q ss_pred             ChhccCCCCCCeeeCCC---------------------CcccccCccccccCCCCCEEeccC-CcccccCCCCCcCCccC
Q 036049          367 PSCLGNLTNLESLDLSN---------------------NKFSGRIPQQLVELTFLAFFNVSD-NYLTGLIPQGKQFATFD  424 (517)
Q Consensus       367 p~~l~~l~~L~~L~Ls~---------------------N~l~~~~p~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~~~l~  424 (517)
                      |..+ .+++|+.|+|++                     |.++ .+|..+..+++|++|++++ |++.+.++....+..+.
T Consensus       819 P~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~  896 (1153)
T PLN03210        819 PTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE  896 (1153)
T ss_pred             CCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence            6543 445555555554                     4444 4555566666666666666 34444433334555555


Q ss_pred             CCcccCCCC
Q 036049          425 NTSFDGNSG  433 (517)
Q Consensus       425 ~~~~~~Np~  433 (517)
                      .+++.+++.
T Consensus       897 ~L~l~~C~~  905 (1153)
T PLN03210        897 TVDFSDCGA  905 (1153)
T ss_pred             eeecCCCcc
Confidence            555555443

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=4.7e-21  Score=201.39  Aligned_cols=259  Identities=19%  Similarity=0.185  Sum_probs=198.4

Q ss_pred             CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049           87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI  166 (517)
Q Consensus        87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L  166 (517)
                      ..-..|+++++.++.  +|+.+..   +|+.|++++|+++ .+|.   .+++|++|++++|+++ .+|..   .++|++|
T Consensus       201 ~~~~~LdLs~~~Lts--LP~~l~~---~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLTT--LPDCLPA---HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCCc--CCcchhc---CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---cccccee
Confidence            356789999999986  8887653   8999999999994 5675   3588999999999999 45643   4689999


Q ss_pred             EcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCC
Q 036049          167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEP  246 (517)
Q Consensus       167 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~  246 (517)
                      ++++|.++ .+|..   .++|+.|++++|+++       .+|..     .++|++|++++|++++++..           
T Consensus       268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-------~LP~~-----p~~L~~LdLS~N~L~~Lp~l-----------  320 (788)
T PRK15387        268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-------SLPVL-----PPGLQELSVSDNQLASLPAL-----------  320 (788)
T ss_pred             eccCCchh-hhhhc---hhhcCEEECcCCccc-------ccccc-----ccccceeECCCCccccCCCC-----------
Confidence            99999998 45543   367889999999997       55542     57899999999999986421           


Q ss_pred             CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049          247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD  326 (517)
Q Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                           ..+|+.|++++|.++ .+|..    ..+|+.|+++++..-.                            ....+.
T Consensus       321 -----p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~----------------------------LP~lp~  362 (788)
T PRK15387        321 -----PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS----------------------------LPTLPS  362 (788)
T ss_pred             -----cccccccccccCccc-ccccc----ccccceEecCCCccCC----------------------------CCCCCc
Confidence                 246889999999998 57741    2468888887732211                            111245


Q ss_pred             hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049          327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  406 (517)
                      +|+.|++++|.+.. +|..   ..+|+.|+|++|+|+ .+|..   .++|+.|++++|+++ .+|..+   .+|+.|+++
T Consensus       363 ~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls  430 (788)
T PRK15387        363 ELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVY  430 (788)
T ss_pred             ccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhc
Confidence            78889999999984 6653   357999999999999 46653   368999999999998 467543   468899999


Q ss_pred             CCcccccCCCCCcCCccCCCcccCCCCCC
Q 036049          407 DNYLTGLIPQGKQFATFDNTSFDGNSGLC  435 (517)
Q Consensus       407 ~N~l~~~~p~~~~~~~l~~~~~~~Np~~c  435 (517)
                      +|+|+..+.....+..+..+++++||+..
T Consensus       431 ~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        431 RNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             cCcccccChHHhhccCCCeEECCCCCCCc
Confidence            99999554344567888899999999764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=4.1e-21  Score=203.14  Aligned_cols=246  Identities=21%  Similarity=0.338  Sum_probs=185.9

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      +...|++++++++ .+|..+.  ++|+.|+|++|+++ .+|..+.  ++|++|++++|.++ .+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            6889999999984 5777664  58999999999999 5676654  58999999999998 5676554  579999999


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS  273 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  273 (517)
                      +|.+.       .+|..+    ..+|+.|++++|+++.++...               .++|+.|++++|+++ .+|...
T Consensus       250 ~N~L~-------~LP~~l----~s~L~~L~Ls~N~L~~LP~~l---------------~~sL~~L~Ls~N~Lt-~LP~~l  302 (754)
T PRK15370        250 INRIT-------ELPERL----PSALQSLDLFHNKISCLPENL---------------PEELRYLSVYDNSIR-TLPAHL  302 (754)
T ss_pred             CCccC-------cCChhH----hCCCCEEECcCCccCcccccc---------------CCCCcEEECCCCccc-cCcccc
Confidence            99987       666654    357999999999999764321               258999999999998 677543


Q ss_pred             hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049          274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ  353 (517)
Q Consensus       274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  353 (517)
                      .   ..|+.|+++++....                        .+   ...+++|+.|++++|.+++ +|..+.  ++|+
T Consensus       303 p---~sL~~L~Ls~N~Lt~------------------------LP---~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~  349 (754)
T PRK15370        303 P---SGITHLNVQSNSLTA------------------------LP---ETLPPGLKTLEAGENALTS-LPASLP--PELQ  349 (754)
T ss_pred             h---hhHHHHHhcCCcccc------------------------CC---ccccccceeccccCCcccc-CChhhc--Cccc
Confidence            2   356666666522110                        00   0124679999999999985 676553  7899


Q ss_pred             eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-----CcCCccCCCcc
Q 036049          354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-----KQFATFDNTSF  428 (517)
Q Consensus       354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-----~~~~~l~~~~~  428 (517)
                      .|+|++|+++ .+|..+.  ++|++|+|++|+++ .+|..+.  ..|+.|++++|+|++. |..     .....+..+++
T Consensus       350 ~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L  422 (754)
T PRK15370        350 VLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIV  422 (754)
T ss_pred             EEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEe
Confidence            9999999998 6777663  68999999999999 5676654  3699999999999854 432     12345567788


Q ss_pred             cCCCCCC
Q 036049          429 DGNSGLC  435 (517)
Q Consensus       429 ~~Np~~c  435 (517)
                      .+||+..
T Consensus       423 ~~Npls~  429 (754)
T PRK15370        423 EYNPFSE  429 (754)
T ss_pred             eCCCccH
Confidence            8998753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=3.2e-20  Score=182.12  Aligned_cols=131  Identities=22%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             EEEcCCCCcee-eeCCCcccccCCCCCEEEcCCCCCCCC---CCchhhhhcccCCcEEEccCCCCcc------cCCccCC
Q 036049           65 KLNLSHSCLFG-SINSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLKLLDLRSCGFWG------KVPHSIG  134 (517)
Q Consensus        65 ~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~------~~p~~~~  134 (517)
                      .|+|..+.+++ ....  .+..+.+|++|+++++.++..   .++..+.... +|++|+++++.+.+      .++..+.
T Consensus         2 ~l~L~~~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHH
Confidence            35566666652 2222  445566677777777766432   1222222332 56677776666531      1223345


Q ss_pred             CCCCCcEEEccCCcccccccccccCCcc---ccEEEcccccccc----cCchhhhcC-CcccccccccccCc
Q 036049          135 NFTRLQFLYLGFNNFSGDLLGSIGNLRS---LEAIYMSKCNFSG----QITSSLRNL-TELVVLDMAQNSYG  198 (517)
Q Consensus       135 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~l~~N~l~  198 (517)
                      .+++|++|++++|.+.+..+..+..+.+   |++|++++|.+++    .+...+..+ ++|++|++++|.++
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            5556666666666665444444443333   6666666665542    122233344 55555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=1.8e-20  Score=183.86  Aligned_cols=285  Identities=20%  Similarity=0.180  Sum_probs=148.8

Q ss_pred             EEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCccc----CCccCCCCCCCcEEEccCCccc------ccccccccCC
Q 036049           91 WLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGK----VPHSIGNFTRLQFLYLGFNNFS------GDLLGSIGNL  160 (517)
Q Consensus        91 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~i~------~~~p~~~~~l  160 (517)
                      .|+|..+.+++......+..+. +|++|+++++.+...    ++..+...++|++|+++++.+.      ..++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~-~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLL-CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHh-hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            3566666666443444444444 677777777776322    3444556666777777777665      1233455666


Q ss_pred             ccccEEEcccccccccCchhhhcCCc---ccccccccccCcceeccccccccccccccC-CCCCeEeccCCcccccCCCC
Q 036049          161 RSLEAIYMSKCNFSGQITSSLRNLTE---LVVLDMAQNSYGGTMEIEGKVHKWLLDPNM-QNLNALNLSHNLLTGFDQHL  236 (517)
Q Consensus       161 ~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~  236 (517)
                      ++|++|++++|.+.+..+..+..+.+   |++|++++|++++.  ....+...+..  + ++|++|++++|.+++.... 
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~--~~~~l~~~l~~--~~~~L~~L~L~~n~l~~~~~~-  155 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR--GLRLLAKGLKD--LPPALEKLVLGRNRLEGASCE-  155 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH--HHHHHHHHHHh--CCCCceEEEcCCCcCCchHHH-
Confidence            77777777777776555555555544   77777777766521  00011222222  4 6677777777776632110 


Q ss_pred             CCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecC
Q 036049          237 VLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKG  316 (517)
Q Consensus       237 ~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                             .....+..+++|++|++++|.+++.........+.                                      
T Consensus       156 -------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~--------------------------------------  190 (319)
T cd00116         156 -------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLK--------------------------------------  190 (319)
T ss_pred             -------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH--------------------------------------
Confidence                   00111234556777777777766321111100000                                      


Q ss_pred             ccccCCCchhhhhhhhCCCCCCccc----CcccccCCCCCCeEeCcCccccccCChhcc-----CCCCCCeeeCCCCccc
Q 036049          317 RMMAYNKIPDILAGIILSNKSFDGA----IPASISNLKGLQVLNLHNNNLQGHIPSCLG-----NLTNLESLDLSNNKFS  387 (517)
Q Consensus       317 ~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~  387 (517)
                             ..+.|+.|++++|.+++.    ++..+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++
T Consensus       191 -------~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         191 -------ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             -------hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence                   012344455555554422    223345566677777777766642222221     1356777777777665


Q ss_pred             c----cCccccccCCCCCEEeccCCcccccCCC----C-CcC-CccCCCcccCCCC
Q 036049          388 G----RIPQQLVELTFLAFFNVSDNYLTGLIPQ----G-KQF-ATFDNTSFDGNSG  433 (517)
Q Consensus       388 ~----~~p~~l~~l~~L~~L~l~~N~l~~~~p~----~-~~~-~~l~~~~~~~Np~  433 (517)
                      .    .+...+..+++|+++++++|.++.....    . ..+ ..+..+++.+|||
T Consensus       264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            2    2334445556677777777776633111    1 122 3455556666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.76  E-value=5.5e-20  Score=171.43  Aligned_cols=316  Identities=19%  Similarity=0.195  Sum_probs=177.1

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccC-CCCcccCCccCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRS-CGFWGKVPHSIGNFTR  138 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~l~~  138 (517)
                      +...+.|+|..|+|+...+.  +|..+++|+.||||+|.|+.. -|..+..+. +|..|-+.+ |+|+......|++|..
T Consensus        66 P~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             CCcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            46789999999999977777  999999999999999999884 445555555 665555544 8886555566777766


Q ss_pred             CcEEEccCCccccccccccc------------------------CCccccEEEccccccc--------------------
Q 036049          139 LQFLYLGFNNFSGDLLGSIG------------------------NLRSLEAIYMSKCNFS--------------------  174 (517)
Q Consensus       139 L~~L~Ls~n~i~~~~p~~~~------------------------~l~~L~~L~L~~n~l~--------------------  174 (517)
                      |+.|.+.-|++.-...+.|.                        .+..++++.+..|.+.                    
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            66666655543332222232                        2333333333222200                    


Q ss_pred             -----------------------------------------ccCc-hhhhcCCcccccccccccCcceecccccccc-cc
Q 036049          175 -----------------------------------------GQIT-SSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WL  211 (517)
Q Consensus       175 -----------------------------------------~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~  211 (517)
                                                               ...| ..|..+++|++|++++|+++       .|.+ ++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-------~i~~~aF  294 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-------RIEDGAF  294 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-------hhhhhhh
Confidence                                                     0111 12455666677777777666       2222 22


Q ss_pred             ccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccc
Q 036049          212 LDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL  291 (517)
Q Consensus       212 ~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l  291 (517)
                      ..  ...+++|.|..|+|..+...            .|.++..|+.|+|.+|+|+ .+.+..|..+..|..+++-.+...
T Consensus       295 e~--~a~l~eL~L~~N~l~~v~~~------------~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  295 EG--AAELQELYLTRNKLEFVSSG------------MFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cc--hhhhhhhhcCcchHHHHHHH------------hhhccccceeeeecCCeeE-EEecccccccceeeeeehccCccc
Confidence            22  56666666666666654322            3456666666677776666 444455666666666554332111


Q ss_pred             c------------cccCCCcccc----hhhhccceeeeecCcccc---------CC---Cchhhhh-hhhCCCCCCcccC
Q 036049          292 Q------------DVLSPSGKLL----MTTYDYLLTMNIKGRMMA---------YN---KIPDILA-GIILSNKSFDGAI  342 (517)
Q Consensus       292 ~------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---------~~---~~~~~L~-~L~Ls~n~l~~~~  342 (517)
                      .            ..-....+..    ......+.+..+......         ..   .-.+-+. ....|+..++ .+
T Consensus       360 CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~l  438 (498)
T KOG4237|consen  360 CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LL  438 (498)
T ss_pred             CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hc
Confidence            0            0000000000    000000000000000000         00   0011222 2334444444 56


Q ss_pred             cccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCC
Q 036049          343 PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN  408 (517)
Q Consensus       343 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  408 (517)
                      |..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+++|+|+..--..|.+++.|.+|-|++|
T Consensus       439 p~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  439 PRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            65443  45678899999998 77775  56778 8899999998666677888999999988876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=2.9e-20  Score=154.05  Aligned_cols=159  Identities=26%  Similarity=0.437  Sum_probs=131.0

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      ..+++.|.||+|.++. +|+  .+..+.+|+.|++++|+++.  +|..+..+. +|+.|++.-|++ ...|..|+.++.|
T Consensus        32 ~s~ITrLtLSHNKl~~-vpp--nia~l~nlevln~~nnqie~--lp~~issl~-klr~lnvgmnrl-~~lprgfgs~p~l  104 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV-VPP--NIAELKNLEVLNLSNNQIEE--LPTSISSLP-KLRILNVGMNRL-NILPRGFGSFPAL  104 (264)
T ss_pred             hhhhhhhhcccCceee-cCC--cHHHhhhhhhhhcccchhhh--cChhhhhch-hhhheecchhhh-hcCccccCCCchh
Confidence            3578888888888874 444  67888888888888888877  788888887 888888888888 6788888888888


Q ss_pred             cEEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCC
Q 036049          140 QFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN  218 (517)
Q Consensus       140 ~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~  218 (517)
                      +.|||++|++.. .+|..|..|..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+-       .+|..++.  ++.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-------~lpkeig~--lt~  174 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-------SLPKEIGD--LTR  174 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-------hCcHHHHH--HHH
Confidence            888888888864 57888888888888888888888 77888888888888888888876       77888877  888


Q ss_pred             CCeEeccCCcccccCCC
Q 036049          219 LNALNLSHNLLTGFDQH  235 (517)
Q Consensus       219 L~~L~Ls~n~l~~~~~~  235 (517)
                      |++|.+.+|+++-++|.
T Consensus       175 lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  175 LRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHhcccceeeecChh
Confidence            88888888888877655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=1.4e-19  Score=150.00  Aligned_cols=163  Identities=24%  Similarity=0.434  Sum_probs=149.0

Q ss_pred             ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049           82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR  161 (517)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~  161 (517)
                      .+.++.+++.|.||+|+++.  +|+.+..+. +|+.|++++|.+ ..+|.+++.+++|+.|+++-|++. .+|..|+.++
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~-nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNIAELK-NLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcHHHhh-hhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            46677888999999999987  899999999 999999999999 788999999999999999999999 8999999999


Q ss_pred             cccEEEccccccc-ccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCC
Q 036049          162 SLEAIYMSKCNFS-GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP  240 (517)
Q Consensus       162 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~  240 (517)
                      .|++|||.+|++. ..+|..|..++.|+.|++++|.+.       .+|..++.  +++|+.|.+..|.+-.++..     
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-------~lp~dvg~--lt~lqil~lrdndll~lpke-----  168 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-------ILPPDVGK--LTNLQILSLRDNDLLSLPKE-----  168 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-------cCChhhhh--hcceeEEeeccCchhhCcHH-----
Confidence            9999999999986 568999999999999999999997       88999988  99999999999998877543     


Q ss_pred             CCCCCCCCCCCCCcccEEEccCCcCCCCCChh
Q 036049          241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK  272 (517)
Q Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  272 (517)
                              ++.+..|+.|.+.+|+++ .+|++
T Consensus       169 --------ig~lt~lrelhiqgnrl~-vlppe  191 (264)
T KOG0617|consen  169 --------IGDLTRLRELHIQGNRLT-VLPPE  191 (264)
T ss_pred             --------HHHHHHHHHHhcccceee-ecChh
Confidence                    478899999999999998 77765

>PLN03150 hypothetical protein; Provisional

Probab=99.65  E-value=2.2e-16  Score=166.75  Aligned_cols=118  Identities=41%  Similarity=0.721  Sum_probs=106.6

Q ss_pred             hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049          327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  406 (517)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCC--cCCccCCCcccCCCCCCCCCCCCCCC
Q 036049          407 DNYLTGLIPQGK--QFATFDNTSFDGNSGLCGKPLSKGCE  444 (517)
Q Consensus       407 ~N~l~~~~p~~~--~~~~l~~~~~~~Np~~c~~~~~~~c~  444 (517)
                      +|+++|.+|...  .+..+..+++.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  23445677899999999877655664

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=8.7e-15  Score=154.62  Aligned_cols=149  Identities=30%  Similarity=0.432  Sum_probs=107.0

Q ss_pred             CchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCc-----ccceeecCCCC----CcEEEEEcCCCCcee
Q 036049            5 CHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCC-----SWDGVHCNKNT----GHVVKLNLSHSCLFG   75 (517)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C-----~w~gv~c~~~~----~~l~~L~Ls~n~l~~   75 (517)
                      +.++|..||+++|+++..+.           ..+|..     ++|     .|.|+.|....    ..++.|+|++|.+.+
T Consensus       369 t~~~~~~aL~~~k~~~~~~~-----------~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g  432 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGLPL-----------RFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG  432 (623)
T ss_pred             cCchHHHHHHHHHHhcCCcc-----------cCCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccc
Confidence            45679999999999876432           247864     334     79999995321    247888888888887


Q ss_pred             eeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccc
Q 036049           76 SINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLG  155 (517)
Q Consensus        76 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~  155 (517)
                      .+|.  .+..+++|+.|+|++|.+.+. +|..+..+. +|++|+|++|.+.+.+|+.++++++|++|+|++|.+++.+|.
T Consensus       433 ~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        433 FIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             cCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence            7777  777788888888888877764 666666666 777777777777777777777777777777777777777777


Q ss_pred             cccCC-ccccEEEcccccc
Q 036049          156 SIGNL-RSLEAIYMSKCNF  173 (517)
Q Consensus       156 ~~~~l-~~L~~L~L~~n~l  173 (517)
                      .+..+ .++..+++.+|..
T Consensus       509 ~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        509 ALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             HHhhccccCceEEecCCcc
Confidence            66543 3455666666643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.43  E-value=2.5e-15  Score=146.75  Aligned_cols=108  Identities=26%  Similarity=0.389  Sum_probs=61.5

Q ss_pred             ccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccc
Q 036049           84 YKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSL  163 (517)
Q Consensus        84 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L  163 (517)
                      ..+..-...||+.|++..  +|..+..+. .|+.+.|..|.+ ..+|..++++..|++|||+.|+++ .+|..++.|+ |
T Consensus        72 ~~ltdt~~aDlsrNR~~e--lp~~~~~f~-~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L  145 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSE--LPEEACAFV-SLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L  145 (722)
T ss_pred             ccccchhhhhcccccccc--CchHHHHHH-HHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c
Confidence            344445556666666655  555555555 566666666666 455556666666666666666666 5555555543 5


Q ss_pred             cEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          164 EAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       164 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      +.|-+++|+++ .+|+.++.+..|..||.+.|.+.
T Consensus       146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~  179 (722)
T KOG0532|consen  146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ  179 (722)
T ss_pred             eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence            56666666655 45555555555555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=2.7e-14  Score=139.64  Aligned_cols=131  Identities=23%  Similarity=0.309  Sum_probs=85.8

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      .-...||+.|++ ..+|..+..+..|+.+.|..|.+. .+|..++++..|++|||+.|+++ .+|..+..++ |+.|-++
T Consensus        76 dt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            344566777776 456666666667777777777776 56667777777777777777776 5566665554 6667777


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS  271 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  271 (517)
                      +|+++       .+|..++.  ...|..||.+.|.+..+++.             ++++.+|+.|.+..|++. .+|+
T Consensus       152 NNkl~-------~lp~~ig~--~~tl~~ld~s~nei~slpsq-------------l~~l~slr~l~vrRn~l~-~lp~  206 (722)
T KOG0532|consen  152 NNKLT-------SLPEEIGL--LPTLAHLDVSKNEIQSLPSQ-------------LGYLTSLRDLNVRRNHLE-DLPE  206 (722)
T ss_pred             cCccc-------cCCccccc--chhHHHhhhhhhhhhhchHH-------------hhhHHHHHHHHHhhhhhh-hCCH
Confidence            77766       66666664  66677777777777665443             255666666666666665 4444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.36  E-value=8.7e-13  Score=133.30  Aligned_cols=85  Identities=46%  Similarity=0.623  Sum_probs=46.8

Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD  407 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  407 (517)
                      |+++++++|.+. ..+..+..+.++..|.+++|++. ..+..++.+++++.|++++|+++. ++. +..+.+++.|++++
T Consensus       211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccC
Confidence            444444444322 23334455555666666666665 335555666666666666666663 322 55666666666666


Q ss_pred             CcccccCCC
Q 036049          408 NYLTGLIPQ  416 (517)
Q Consensus       408 N~l~~~~p~  416 (517)
                      |.++..+|.
T Consensus       287 n~~~~~~~~  295 (394)
T COG4886         287 NSLSNALPL  295 (394)
T ss_pred             ccccccchh
Confidence            666655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.33  E-value=2e-12  Score=130.67  Aligned_cols=199  Identities=36%  Similarity=0.482  Sum_probs=120.6

Q ss_pred             EEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc-cccEEEcccccccccCchhhhcCCcccccccccc
Q 036049          117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR-SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQN  195 (517)
Q Consensus       117 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N  195 (517)
                      .+++..|.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4666666552 22223445566777777777777 4555555553 7777777777776 45556677777777777777


Q ss_pred             cCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhh
Q 036049          196 SYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL  275 (517)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  275 (517)
                      ++.       .+|.....  .++|+.|++++|+++.+++..             .....|++|.+++|++. ..+.. +.
T Consensus       174 ~l~-------~l~~~~~~--~~~L~~L~ls~N~i~~l~~~~-------------~~~~~L~~l~~~~N~~~-~~~~~-~~  229 (394)
T COG4886         174 DLS-------DLPKLLSN--LSNLNNLDLSGNKISDLPPEI-------------ELLSALEELDLSNNSII-ELLSS-LS  229 (394)
T ss_pred             hhh-------hhhhhhhh--hhhhhheeccCCccccCchhh-------------hhhhhhhhhhhcCCcce-ecchh-hh
Confidence            776       45544333  677777777777777665431             23445777777777533 22211 11


Q ss_pred             cccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeE
Q 036049          276 CWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVL  355 (517)
Q Consensus       276 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  355 (517)
                      .                                                ...+..+.+.+|.+. ..+..+..+++++.|
T Consensus       230 ~------------------------------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L  260 (394)
T COG4886         230 N------------------------------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETL  260 (394)
T ss_pred             h------------------------------------------------cccccccccCCceee-eccchhcccccccee
Confidence            1                                                122333334445444 224556677778888


Q ss_pred             eCcCccccccCChhccCCCCCCeeeCCCCcccccCccc
Q 036049          356 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ  393 (517)
Q Consensus       356 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  393 (517)
                      ++++|+++ .++. ++.+.+++.|++++|.+....|..
T Consensus       261 ~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         261 DLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            88888887 4444 777788888888888777554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=3e-12  Score=116.03  Aligned_cols=229  Identities=22%  Similarity=0.212  Sum_probs=129.8

Q ss_pred             hhcccCCcEEEccCCC--------CcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchh
Q 036049          109 INLSCSLKLLDLRSCG--------FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS  180 (517)
Q Consensus       109 ~~~~~~L~~L~Ls~n~--------l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  180 (517)
                      ..+.+.|.+|..+...        +...+|-.+.-+++|..+.+|.+.-. .+.+-...-+.|+++.+.+..+.. .| .
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~-~  254 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VP-S  254 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-cc-c
Confidence            3344466666655432        11223333444566666666665443 222222233567777766655441 11 1


Q ss_pred             hhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEc
Q 036049          181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL  260 (517)
Q Consensus       181 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~L  260 (517)
                      +-.++.+....-+.-..     ..|.+...+..  .+.|+++|||+|.|+.+....             .-.|.++.|++
T Consensus       255 l~pe~~~~D~~~~E~~t-----~~G~~~~~~dT--Wq~LtelDLS~N~I~~iDESv-------------KL~Pkir~L~l  314 (490)
T KOG1259|consen  255 LLPETILADPSGSEPST-----SNGSALVSADT--WQELTELDLSGNLITQIDESV-------------KLAPKLRRLIL  314 (490)
T ss_pred             ccchhhhcCccCCCCCc-----cCCceEEecch--Hhhhhhccccccchhhhhhhh-------------hhccceeEEec
Confidence            22222222221111111     11222222222  567889999999888765442             44678899999


Q ss_pred             cCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcc
Q 036049          261 SDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDG  340 (517)
Q Consensus       261 s~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  340 (517)
                      |+|.+. .+-.  +..                                                +.+|+.||||+|.++ 
T Consensus       315 S~N~i~-~v~n--La~------------------------------------------------L~~L~~LDLS~N~Ls-  342 (490)
T KOG1259|consen  315 SQNRIR-TVQN--LAE------------------------------------------------LPQLQLLDLSGNLLA-  342 (490)
T ss_pred             ccccee-eehh--hhh------------------------------------------------cccceEeecccchhH-
Confidence            999886 2221  111                                                345666667777666 


Q ss_pred             cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccccc-CccccccCCCCCEEeccCCcccccC
Q 036049          341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTGLI  414 (517)
Q Consensus       341 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~  414 (517)
                      .+..+-..+.+++.|.|+.|.|..  -..+..+-+|..||+++|+|... -...++++|.|+.+.+.+|++.+.+
T Consensus       343 ~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  343 ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            334445567788888888888752  23466777888888888888742 2256778888888888888887554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=9.9e-13  Score=121.79  Aligned_cols=66  Identities=24%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             cccCCCCCCeEeCcCccccccCChhc-----cCCCCCCeeeCCCCccccc----CccccccCCCCCEEeccCCcc
Q 036049          345 SISNLKGLQVLNLHNNNLQGHIPSCL-----GNLTNLESLDLSNNKFSGR----IPQQLVELTFLAFFNVSDNYL  410 (517)
Q Consensus       345 ~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l  410 (517)
                      .++.+++|++|++++|.+...-...|     ...++|+.|.+.+|.|+..    +...+...+.|..|+|++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            34445666677777766654333222     2356677777777766532    223344466777777777776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=1.9e-11  Score=106.32  Aligned_cols=109  Identities=28%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             cccCCCCCEEEcCCCCCCCCCCchhhhh-cccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccc-cCC
Q 036049           83 LYKLVHLEWLNLALNDFNSSEIQPEIIN-LSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSI-GNL  160 (517)
Q Consensus        83 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~-~~l  160 (517)
                      +.+..++++|+|++|.|+.  + +.+.. +. +|+.|++++|.|.. +. .+..+++|++|++++|.|+. +.+.+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~-~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--I-ENLGATLD-KLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-T-T--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-
T ss_pred             ccccccccccccccccccc--c-cchhhhhc-CCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhC
Confidence            4445566777777777754  2 23332 33 67777777777733 32 46667777777777777773 33333 356


Q ss_pred             ccccEEEcccccccccC-chhhhcCCcccccccccccCc
Q 036049          161 RSLEAIYMSKCNFSGQI-TSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       161 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      ++|++|++++|+|...- -..+..+++|++|++.+|.++
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            77777777777775321 134556667777777777665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=5.4e-12  Score=120.12  Aligned_cols=210  Identities=19%  Similarity=0.131  Sum_probs=138.7

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCcc-CCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHS-IGNFTR  138 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~  138 (517)
                      ..+++.+.|.+........ ......|++++.||||.|-+..-..-..+..-.++|+.|+|+.|++.-..... -..+++
T Consensus       120 ~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3578888888887653221 12566799999999999987653122344444459999999999984322221 235788


Q ss_pred             CcEEEccCCccccccc-ccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCC
Q 036049          139 LQFLYLGFNNFSGDLL-GSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQ  217 (517)
Q Consensus       139 L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~  217 (517)
                      |+.|.|+.|.++.... ......|+|+.|+|..|............+..|++|||++|++.       ..+.......++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-------~~~~~~~~~~l~  271 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-------DFDQGYKVGTLP  271 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-------cccccccccccc
Confidence            9999999999984322 22356799999999999543344445566788999999999887       333222222388


Q ss_pred             CCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh-hhhhcccccceec
Q 036049          218 NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS-KSFLCWNAMKIVN  284 (517)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~l~~L~~L~  284 (517)
                      .|+.|+++.+.+.++....    +  ........+++|++|+++.|++. ..+. .....+.+|+.+.
T Consensus       272 ~L~~Lnls~tgi~si~~~d----~--~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPD----V--ESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             chhhhhccccCcchhcCCC----c--cchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence            9999999999888753221    0  00011256889999999999996 3432 2233455555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.6e-11  Score=116.92  Aligned_cols=212  Identities=20%  Similarity=0.200  Sum_probs=125.2

Q ss_pred             CCCCCCcEEEccCCccccccc--ccccCCccccEEEccccccccc--CchhhhcCCcccccccccccCcceecccccccc
Q 036049          134 GNFTRLQFLYLGFNNFSGDLL--GSIGNLRSLEAIYMSKCNFSGQ--ITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK  209 (517)
Q Consensus       134 ~~l~~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  209 (517)
                      .++.+|+...|.+..+.. .+  .....+++++.|||+.|-+..-  +-.....+++|+.|+++.|++....   +..-.
T Consensus       118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~---~s~~~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI---SSNTT  193 (505)
T ss_pred             hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc---cccch
Confidence            355667777777666652 22  2445666777777777766522  2233455666666777666654110   00000


Q ss_pred             ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccc
Q 036049          210 WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR  289 (517)
Q Consensus       210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~  289 (517)
                          ..+++|+.|.|+.|.++.-....           ....+|+|+.|+|..|.....                     
T Consensus       194 ----~~l~~lK~L~l~~CGls~k~V~~-----------~~~~fPsl~~L~L~~N~~~~~---------------------  237 (505)
T KOG3207|consen  194 ----LLLSHLKQLVLNSCGLSWKDVQW-----------ILLTFPSLEVLYLEANEIILI---------------------  237 (505)
T ss_pred             ----hhhhhhheEEeccCCCCHHHHHH-----------HHHhCCcHHHhhhhcccccce---------------------
Confidence                01455666666666555221110           112355556666655531100                     


Q ss_pred             ccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccC-cccccCCCCCCeEeCcCcccccc-CC
Q 036049          290 YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAI-PASISNLKGLQVLNLHNNNLQGH-IP  367 (517)
Q Consensus       290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p  367 (517)
                                                  ...-...+..|++|||++|++.... -...+.++.|+.|+++.+.+... .|
T Consensus       238 ----------------------------~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~  289 (505)
T KOG3207|consen  238 ----------------------------KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP  289 (505)
T ss_pred             ----------------------------ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC
Confidence                                        0111233678999999999987432 13467789999999999988732 23


Q ss_pred             hh-----ccCCCCCCeeeCCCCccccc-CccccccCCCCCEEeccCCccccc
Q 036049          368 SC-----LGNLTNLESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       368 ~~-----l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                      +.     ...+++|++|+++.|+|.+. .-..+..+++|+.|.+..|.++..
T Consensus       290 d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  290 DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             CccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            32     35678999999999999632 123466678899999999998844

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=2.3e-11  Score=105.84  Aligned_cols=80  Identities=26%  Similarity=0.417  Sum_probs=21.2

Q ss_pred             CCcEEEccCCCCcccCCccCC-CCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhh-hcCCcccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIG-NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL-RNLTELVVLD  191 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~  191 (517)
                      ++++|+|++|.|.. + +.++ .+.+|+.|++++|.|+. + +.+..+++|++|++++|+|+. +.+.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            57777777777733 2 2344 46677777777777773 2 246667777777777777763 33333 3466666666


Q ss_pred             cccccCc
Q 036049          192 MAQNSYG  198 (517)
Q Consensus       192 l~~N~l~  198 (517)
                      +++|++.
T Consensus        95 L~~N~I~  101 (175)
T PF14580_consen   95 LSNNKIS  101 (175)
T ss_dssp             -TTS---
T ss_pred             CcCCcCC
Confidence            6666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.08  E-value=2.6e-11  Score=122.77  Aligned_cols=244  Identities=21%  Similarity=0.238  Sum_probs=130.5

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      .++.+++..|.+.. +-..+..+++|+.|++..|.|.. +...+..+++|++|++++|.|+...  .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence            55555566666532 22335566666666666666663 2222555666666666666666332  24455556666666


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS  273 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  273 (517)
                      +|.+...       . .+..  +..|+.+++++|.++.+...           . ...+.+++.+++.+|.+. .+..  
T Consensus       149 ~N~i~~~-------~-~~~~--l~~L~~l~l~~n~i~~ie~~-----------~-~~~~~~l~~l~l~~n~i~-~i~~--  203 (414)
T KOG0531|consen  149 GNLISDI-------S-GLES--LKSLKLLDLSYNRIVDIEND-----------E-LSELISLEELDLGGNSIR-EIEG--  203 (414)
T ss_pred             cCcchhc-------c-CCcc--chhhhcccCCcchhhhhhhh-----------h-hhhccchHHHhccCCchh-cccc--
Confidence            6666521       1 1111  55666666666666654321           0 134556666666666665 2221  


Q ss_pred             hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh--hhhhhhCCCCCCcccCcccccCCCC
Q 036049          274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD--ILAGIILSNKSFDGAIPASISNLKG  351 (517)
Q Consensus       274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~~~~l~~  351 (517)
                      +..+..+..+++.......                     +.+.     ....  .|+.+++++|.+.. .+..+..+..
T Consensus       204 ~~~~~~l~~~~l~~n~i~~---------------------~~~l-----~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~  256 (414)
T KOG0531|consen  204 LDLLKKLVLLSLLDNKISK---------------------LEGL-----NELVMLHLRELYLSGNRISR-SPEGLENLKN  256 (414)
T ss_pred             hHHHHHHHHhhccccccee---------------------ccCc-----ccchhHHHHHHhcccCcccc-cccccccccc
Confidence            1111111111111100000                     0000     0011  37788888888873 3345666778


Q ss_pred             CCeEeCcCccccccCChhccCCCCCCeeeCCCCccccc---Cccc-cccCCCCCEEeccCCcccccCC
Q 036049          352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR---IPQQ-LVELTFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       352 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l~~N~l~~~~p  415 (517)
                      +..|++..|++...  ..+...+.+..+..+.|++...   .... ....+.++.+.+.+|++....+
T Consensus       257 l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  257 LPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            88888888887632  2245566777777777776532   1121 4556778888888888776554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=2.6e-11  Score=110.00  Aligned_cols=106  Identities=24%  Similarity=0.293  Sum_probs=86.1

Q ss_pred             hhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEe
Q 036049          325 PDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN  404 (517)
Q Consensus       325 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  404 (517)
                      .+.++.|++|+|.+...  ..+..+++|+.||||+|.++ .+..+-..+.+.+.|.|+.|.|...  ..+..+-+|..||
T Consensus       306 ~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLD  380 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLD  380 (490)
T ss_pred             ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecc
Confidence            56688889999998743  23778999999999999998 6666667788999999999999733  4678889999999


Q ss_pred             ccCCccccc--CCCCCcCCccCCCcccCCCCCC
Q 036049          405 VSDNYLTGL--IPQGKQFATFDNTSFDGNSGLC  435 (517)
Q Consensus       405 l~~N~l~~~--~p~~~~~~~l~~~~~~~Np~~c  435 (517)
                      +++|+|...  +-..+.++.++.+.+.+||..-
T Consensus       381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999999744  2334678888999999998754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=2.3e-10  Score=123.91  Aligned_cols=129  Identities=26%  Similarity=0.296  Sum_probs=89.9

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC--CCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND--FNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTR  138 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  138 (517)
                      ..+++..+-+|.+......    ...+.|++|-+..|.  +..  ++..++...+.|++|||++|.-.+.+|+.++.|-+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             hheeEEEEeccchhhccCC----CCCCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            3566666666666433211    234467777777775  433  55665655558888888877666778888888888


Q ss_pred             CcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccccccc
Q 036049          139 LQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNS  196 (517)
Q Consensus       139 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~  196 (517)
                      |++|+++++.+. .+|..+++++.|.+|++..+.-...+|..+..+++|++|.+....
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            888888888887 778888888888888888777655556666678888888776544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.03  E-value=4.9e-11  Score=120.80  Aligned_cols=243  Identities=24%  Similarity=0.240  Sum_probs=144.2

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      .+..+++..|.+.... .  .+..+++|+.|++.+|.|..  +...+..+. +|++|++++|.|+...  .+..++.|+.
T Consensus        73 ~l~~l~l~~n~i~~~~-~--~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKIL-N--HLSKLKSLEALDLYDNKIEK--IENLLSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             hHHhhccchhhhhhhh-c--ccccccceeeeeccccchhh--cccchhhhh-cchheecccccccccc--chhhccchhh
Confidence            3445556666665311 1  36667777777777777765  333244455 7777777777774332  3556666777


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccccCc-hhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      |++++|.|+.  ...+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+..       + ..+..  +..+.
T Consensus       145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-------i-~~~~~--~~~l~  211 (414)
T KOG0531|consen  145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-------I-EGLDL--LKKLV  211 (414)
T ss_pred             heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-------c-cchHH--HHHHH
Confidence            7777777763  3345557777777777777764333 2 4667777777777776641       1 11111  34445


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCC--cccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCC
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFS--KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS  298 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~  298 (517)
                      .+++..|.++.+.+.              ..+.  +|+.+++++|++. .++.. ..                       
T Consensus       212 ~~~l~~n~i~~~~~l--------------~~~~~~~L~~l~l~~n~i~-~~~~~-~~-----------------------  252 (414)
T KOG0531|consen  212 LLSLLDNKISKLEGL--------------NELVMLHLRELYLSGNRIS-RSPEG-LE-----------------------  252 (414)
T ss_pred             HhhcccccceeccCc--------------ccchhHHHHHHhcccCccc-ccccc-cc-----------------------
Confidence            556667766654322              1222  2777777777776 32200 11                       


Q ss_pred             cccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccccc---CChh-ccCCC
Q 036049          299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGH---IPSC-LGNLT  374 (517)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~  374 (517)
                                               ....+..+++.+|.+...  ..+.....+..+.+..|.+...   .... ....+
T Consensus       253 -------------------------~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  253 -------------------------NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             -------------------------ccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence                                     134456667777776643  2244556777788888877521   1121 56678


Q ss_pred             CCCeeeCCCCcccccCc
Q 036049          375 NLESLDLSNNKFSGRIP  391 (517)
Q Consensus       375 ~L~~L~Ls~N~l~~~~p  391 (517)
                      .++.+.+..|.+....+
T Consensus       306 ~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  306 TLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccccCccccccc
Confidence            89999999998876544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=5e-10  Score=80.12  Aligned_cols=61  Identities=39%  Similarity=0.609  Sum_probs=51.6

Q ss_pred             CCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcc
Q 036049          350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYL  410 (517)
Q Consensus       350 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  410 (517)
                      ++|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688889999988866667888889999999999998877778888899999999998875

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=8.7e-10  Score=78.86  Aligned_cols=60  Identities=28%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNF  173 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l  173 (517)
                      +|++|++++|++....+..|.++++|++|++++|.++...+..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566666666666554445666666666666666666655556666666666666666653

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.87  E-value=9.2e-11  Score=108.92  Aligned_cols=193  Identities=19%  Similarity=0.190  Sum_probs=128.8

Q ss_pred             CCcEEEEEcCCCCcee----eeCCCcccccCCCCCEEEcCCCCCCC--CCCchhh-------hhcccCCcEEEccCCCCc
Q 036049           60 TGHVVKLNLSHSCLFG----SINSSSSLYKLVHLEWLNLALNDFNS--SEIQPEI-------INLSCSLKLLDLRSCGFW  126 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~----~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~-------~~~~~~L~~L~Ls~n~l~  126 (517)
                      ...++.|+||+|.+..    .+..  .+.+.++|+..++|+-....  ..+|+.+       .... +|++||||.|.+.
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~--~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~-~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAK--VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP-KLQKLDLSDNAFG  105 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHH--HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC-ceeEeeccccccC
Confidence            3578999999998843    2223  56777889998888642211  1144433       2233 8999999999885


Q ss_pred             ccCCcc----CCCCCCCcEEEccCCccccccc-------------ccccCCccccEEEccccccccc----CchhhhcCC
Q 036049          127 GKVPHS----IGNFTRLQFLYLGFNNFSGDLL-------------GSIGNLRSLEAIYMSKCNFSGQ----ITSSLRNLT  185 (517)
Q Consensus       127 ~~~p~~----~~~l~~L~~L~Ls~n~i~~~~p-------------~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~  185 (517)
                      ...+..    +..+..|++|+|.+|.+...--             ...++-+.|+++..++|++...    +...|...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            444433    3567889999999998762211             1233457899999999998632    334567778


Q ss_pred             cccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcC
Q 036049          186 ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRF  265 (517)
Q Consensus       186 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (517)
                      .|+.+.+..|.+...-.  ..+...+..  +++|+.|||..|.++..        |......+++.+++|+.|++++|.+
T Consensus       186 ~leevr~~qN~I~~eG~--~al~eal~~--~~~LevLdl~DNtft~e--------gs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGV--TALAEALEH--CPHLEVLDLRDNTFTLE--------GSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             ccceEEEecccccCchh--HHHHHHHHh--CCcceeeecccchhhhH--------HHHHHHHHhcccchheeeccccccc
Confidence            99999999998752100  122333444  89999999999988754        2222233456678899999999988


Q ss_pred             CC
Q 036049          266 TG  267 (517)
Q Consensus       266 ~~  267 (517)
                      ..
T Consensus       254 ~~  255 (382)
T KOG1909|consen  254 EN  255 (382)
T ss_pred             cc
Confidence            74

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.63  E-value=5.5e-10  Score=112.78  Aligned_cols=106  Identities=24%  Similarity=0.302  Sum_probs=70.8

Q ss_pred             hhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChh-ccCCCCCCeeeCCCCcccccCccccccCCCCCEE
Q 036049          325 PDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSC-LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF  403 (517)
Q Consensus       325 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  403 (517)
                      .+.++.|+|++|+++..  ..+..++.|++|||++|.+. .+|.. ...+ +|+.|+|++|.++..  ..+.++.+|+.|
T Consensus       186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence            55677777777777643  25667788888888888887 45542 2233 488888888877733  356777888888


Q ss_pred             eccCCcccccCC--CCCcCCccCCCcccCCCCCCC
Q 036049          404 NVSDNYLTGLIP--QGKQFATFDNTSFDGNSGLCG  436 (517)
Q Consensus       404 ~l~~N~l~~~~p--~~~~~~~l~~~~~~~Np~~c~  436 (517)
                      |+++|-|.+.-.  ....+..+..+.+.|||.-|.
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            888887764422  123455566677888887773

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.62  E-value=4.3e-08  Score=64.10  Aligned_cols=42  Identities=40%  Similarity=0.873  Sum_probs=29.6

Q ss_pred             hHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcccceeecC
Q 036049            7 DDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCN   57 (517)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~w~gv~c~   57 (517)
                      ++|++||++||+++..++ .       ..+.+|+... ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~-~-------~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDP-S-------GVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC---------CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhccccc-C-------cccccCCCcC-CCCCeeeccEEeC
Confidence            689999999999999643 2       3789998721 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=4.4e-08  Score=106.39  Aligned_cols=131  Identities=23%  Similarity=0.259  Sum_probs=83.2

Q ss_pred             cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC--CcccCCccCCCCCCCcEEEccCCcccccccccccCCcc
Q 036049           85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG--FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRS  162 (517)
Q Consensus        85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~  162 (517)
                      +....+...+-+|.+..  ++... ... .|++|-+..|.  +....++.|..++.|++|||++|.-.+.+|..++.|-+
T Consensus       521 ~~~~~rr~s~~~~~~~~--~~~~~-~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEH--IAGSS-ENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             chhheeEEEEeccchhh--ccCCC-CCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            34566666766666643  22221 222 67777777775  43333344677788888888877666677877887888


Q ss_pred             ccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCc
Q 036049          163 LEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNL  228 (517)
Q Consensus       163 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  228 (517)
                      |++|++++..+. .+|..+++++.|.+|++..+.-..      .+|.....  +++|++|.+..-.
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~------~~~~i~~~--L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE------SIPGILLE--LQSLRVLRLPRSA  653 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccc------cccchhhh--cccccEEEeeccc
Confidence            888888887777 677777777788877777664331      22222333  6677777665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=2.4e-08  Score=91.06  Aligned_cols=109  Identities=25%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcc--cCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049           89 LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG--KVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI  166 (517)
Q Consensus        89 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L  166 (517)
                      ++.|.+.+..|.....-..+....+.++.|||.+|.|+.  .+...+.+|+.|+.|+|+.|.+...+-..-..+.+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            334444455444332233344444467777777777632  233335667777777777777763222111345577777


Q ss_pred             Ecccccccc-cCchhhhcCCcccccccccccC
Q 036049          167 YMSKCNFSG-QITSSLRNLTELVVLDMAQNSY  197 (517)
Q Consensus       167 ~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l  197 (517)
                      -|.+..+.- .....+..+|.+++|+++.|.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            777766642 2334455666667776666643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=6e-09  Score=105.47  Aligned_cols=176  Identities=22%  Similarity=0.250  Sum_probs=105.7

Q ss_pred             ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC--Cc-------ccCCccCCCCCCCcEEEccCCccccc
Q 036049           82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG--FW-------GKVPHSIGNFTRLQFLYLGFNNFSGD  152 (517)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--l~-------~~~p~~~~~l~~L~~L~Ls~n~i~~~  152 (517)
                      .+..++.|++|.|.++.+...   ..+..+...|++|..++.-  +.       +.+..++. ...|...+.++|.+. .
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV-L  178 (1096)
T ss_pred             eeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-h
Confidence            678899999999999988652   2333333355555433211  00       11111111 134666777777777 5


Q ss_pred             ccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCccccc
Q 036049          153 LLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF  232 (517)
Q Consensus       153 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  232 (517)
                      ...++.-++.|+.|+|++|+++..  +.+..++.|++|||++|.+.       .+|..-..  -..|+.|.+++|.++.+
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-------~vp~l~~~--gc~L~~L~lrnN~l~tL  247 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-------HVPQLSMV--GCKLQLLNLRNNALTTL  247 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-------cccccchh--hhhheeeeecccHHHhh
Confidence            556677777788888888877632  36777788888888888776       34432222  22377778888777765


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049          233 DQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE  287 (517)
Q Consensus       233 ~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~  287 (517)
                      ..              +.++.+|+.||+++|-+.+.-.-..+..+..|+.|.+.+
T Consensus       248 ~g--------------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  248 RG--------------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             hh--------------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence            32              256777777777777776433223344455566666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=2.1e-08  Score=80.97  Aligned_cols=107  Identities=21%  Similarity=0.194  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCceeeeCC-CcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           63 VVKLNLSHSCLFGSINS-SSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        63 l~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      .-.++|+.+.+-. ++. ...+....+|+..+|++|.+..  +|+.+....+.+++|+|++|.| ..+|..+..++.|+.
T Consensus        29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRS  104 (177)
T ss_pred             hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhh
Confidence            3455666665531 111 0123344556666777777765  6666655555677777777777 456666777777777


Q ss_pred             EEccCCcccccccccccCCccccEEEccccccc
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS  174 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~  174 (517)
                      |++++|.+. ..|..|..|.+|..|+..+|.+.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            777777776 45666666666777776666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.19  E-value=2e-07  Score=84.02  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             CCCCCCCcEEEccCCccccccccc----ccCCccccEEEccccccc
Q 036049          133 IGNFTRLQFLYLGFNNFSGDLLGS----IGNLRSLEAIYMSKCNFS  174 (517)
Q Consensus       133 ~~~l~~L~~L~Ls~n~i~~~~p~~----~~~l~~L~~L~L~~n~l~  174 (517)
                      +.+|++|+..+||.|.+....|..    +++-+.|++|.|++|.+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            456777777777777776555543    345567777777777765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.18  E-value=1.6e-07  Score=76.01  Aligned_cols=106  Identities=23%  Similarity=0.333  Sum_probs=68.3

Q ss_pred             CCCEEEcCCCCCCCCCCchhhhhcc--cCCcEEEccCCCCcccCCccCC-CCCCCcEEEccCCcccccccccccCCcccc
Q 036049           88 HLEWLNLALNDFNSSEIQPEIINLS--CSLKLLDLRSCGFWGKVPHSIG-NFTRLQFLYLGFNNFSGDLLGSIGNLRSLE  164 (517)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~  164 (517)
                      .+..+||+.+.+..  +++....+.  ..|+..+|++|.+ ...|..|. ..+.++.|+|++|.|+ .+|..+..++.|+
T Consensus        28 E~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            34556777776643  444433332  1566667777777 44555553 3446777777777777 5666677777777


Q ss_pred             EEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      .|+++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus       104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            7777777776 55666666777777777777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.16  E-value=6.2e-07  Score=95.11  Aligned_cols=146  Identities=19%  Similarity=0.271  Sum_probs=80.4

Q ss_pred             CCcEEEccCCCCc-ccCCccC-CCCCCCcEEEccCCccccc-ccccccCCccccEEEcccccccccCchhhhcCCccccc
Q 036049          114 SLKLLDLRSCGFW-GKVPHSI-GNFTRLQFLYLGFNNFSGD-LLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVL  190 (517)
Q Consensus       114 ~L~~L~Ls~n~l~-~~~p~~~-~~l~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  190 (517)
                      +|++||+++.... ..-|..+ ..+|.|+.|.+++-.+... .-....++++|..||+++.+++..  ..++.+++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            6777777765431 1112222 2467777777777655422 222345667777777777777633  566777777777


Q ss_pred             ccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCC
Q 036049          191 DMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP  270 (517)
Q Consensus       191 ~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  270 (517)
                      .+.+-.+...     ..-..++.  +++|+.||+|.............      ...-...+|+|+.||.|++.+.+.+-
T Consensus       201 ~mrnLe~e~~-----~~l~~LF~--L~~L~vLDIS~~~~~~~~~ii~q------Ylec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  201 SMRNLEFESY-----QDLIDLFN--LKKLRVLDISRDKNNDDTKIIEQ------YLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             hccCCCCCch-----hhHHHHhc--ccCCCeeeccccccccchHHHHH------HHHhcccCccccEEecCCcchhHHHH
Confidence            7766555421     11123444  77777777777654433210000      00011347788888888877765444


Q ss_pred             hhhh
Q 036049          271 SKSF  274 (517)
Q Consensus       271 ~~~~  274 (517)
                      +...
T Consensus       268 e~ll  271 (699)
T KOG3665|consen  268 EELL  271 (699)
T ss_pred             HHHH
Confidence            3333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=4.7e-07  Score=82.77  Aligned_cols=185  Identities=16%  Similarity=0.162  Sum_probs=89.4

Q ss_pred             cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccccccc-ccccCCccc
Q 036049           85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL-GSIGNLRSL  163 (517)
Q Consensus        85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L  163 (517)
                      ..++++.|||.+|.|+.-.--..+....+.|++|+++.|.+...+-..=..+.+|++|-|.+..+.-.-. ..+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            3556666677777665411112223333366777777666643222111345566666666666543222 223456666


Q ss_pred             cEEEcccccccccCc--h----------hhhc-----------------CCcccccccccccCcceeccccccccccccc
Q 036049          164 EAIYMSKCNFSGQIT--S----------SLRN-----------------LTELVVLDMAQNSYGGTMEIEGKVHKWLLDP  214 (517)
Q Consensus       164 ~~L~L~~n~l~~~~p--~----------~l~~-----------------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  214 (517)
                      ++|.++.|.+....-  .          .+..                 ++++..+.+..|.+.....-     +..  .
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-----k~s--e  221 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-----KGS--E  221 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc-----ccC--C
Confidence            666666663321000  0          0111                 23333333444433311110     011  1


Q ss_pred             cCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChh-----hhhcccccceeccCc
Q 036049          215 NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK-----SFLCWNAMKIVNASE  287 (517)
Q Consensus       215 ~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-----~~~~l~~L~~L~l~~  287 (517)
                      .++.+..|+|+.|+|.+....           .++.+++.|+.|.+++|.+...+...     ..+.+++++.|+-+.
T Consensus       222 ~~p~~~~LnL~~~~idswasv-----------D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGsk  288 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASV-----------DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSK  288 (418)
T ss_pred             CCCcchhhhhcccccccHHHH-----------HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcc
Confidence            155566677777776554221           23467788888888888776443221     224455555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=1.7e-05  Score=77.93  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=29.8

Q ss_pred             CCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccc
Q 036049          134 GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQN  195 (517)
Q Consensus       134 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N  195 (517)
                      ..+.+++.|++++|.++ .+|. +  -.+|++|.+++|.--..+|+.+.  ++|+.|++++|
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            34566777777777666 3441 1  13577777766433234444331  34555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=3.1e-06  Score=55.39  Aligned_cols=36  Identities=50%  Similarity=0.753  Sum_probs=19.2

Q ss_pred             CCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049          351 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS  387 (517)
Q Consensus       351 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  387 (517)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666665 34444555566666666665555

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.3e-07  Score=86.45  Aligned_cols=179  Identities=18%  Similarity=0.145  Sum_probs=102.6

Q ss_pred             cccEEEcccccccc-cCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCc-ccccCCCCCCC
Q 036049          162 SLEAIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNL-LTGFDQHLVLL  239 (517)
Q Consensus       162 ~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ll  239 (517)
                      .|++|||++..|+. .+-..+..+.+|+.|.+.++++..      .+-..+.+  -.+|+.|+++.+. ++.....    
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~I~~~iAk--N~~L~~lnlsm~sG~t~n~~~----  253 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------PIVNTIAK--NSNLVRLNLSMCSGFTENALQ----  253 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------HHHHHHhc--cccceeeccccccccchhHHH----
Confidence            47777777777652 233445667777777777777763      34444444  6777788777653 3321110    


Q ss_pred             CCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccc
Q 036049          240 PGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMM  319 (517)
Q Consensus       240 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (517)
                             ..+..++.|..|+++.+.+....-.....                                            
T Consensus       254 -------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~--------------------------------------------  282 (419)
T KOG2120|consen  254 -------LLLSSCSRLDELNLSWCFLFTEKVTVAVA--------------------------------------------  282 (419)
T ss_pred             -------HHHHhhhhHhhcCchHhhccchhhhHHHh--------------------------------------------
Confidence                   12345667777777777665322111110                                            


Q ss_pred             cCCCchhhhhhhhCCCCCC--c-ccCcccccCCCCCCeEeCcCcc-ccccCChhccCCCCCCeeeCCCCcccccCccc--
Q 036049          320 AYNKIPDILAGIILSNKSF--D-GAIPASISNLKGLQVLNLHNNN-LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ--  393 (517)
Q Consensus       320 ~~~~~~~~L~~L~Ls~n~l--~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--  393 (517)
                         .+.+.|+.|+++++.-  . ..+..-...+++|.+||||.|. ++......|..++.|++|.++.|..  .+|..  
T Consensus       283 ---hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~  357 (419)
T KOG2120|consen  283 ---HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLL  357 (419)
T ss_pred             ---hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHee
Confidence               1123344444443311  0 0111123457888889988874 4433444566788888888888854  45543  


Q ss_pred             -cccCCCCCEEeccCC
Q 036049          394 -LVELTFLAFFNVSDN  408 (517)
Q Consensus       394 -l~~l~~L~~L~l~~N  408 (517)
                       +...|+|.+|++.++
T Consensus       358 ~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  358 ELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeccCcceEEEEeccc
Confidence             456788999988765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=5.4e-06  Score=54.26  Aligned_cols=36  Identities=33%  Similarity=0.404  Sum_probs=16.2

Q ss_pred             CCcEEEccCCcccccccccccCCccccEEEccccccc
Q 036049          138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS  174 (517)
Q Consensus       138 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~  174 (517)
                      +|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444555555554 23334445555555555555444

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=1.1e-07  Score=86.87  Aligned_cols=86  Identities=21%  Similarity=0.250  Sum_probs=44.1

Q ss_pred             CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCc-cccc-ccccccCCccccE
Q 036049           88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN-FSGD-LLGSIGNLRSLEA  165 (517)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~~-~p~~~~~l~~L~~  165 (517)
                      .|++||||+..|+..++..-+..+. +|+.|.+.++++...+...+++-.+|+.|+|+.+. ++.. ..--+.+++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3566666666555433333333444 56666666666655555555555666666665532 2211 0111345556666


Q ss_pred             EEccccccc
Q 036049          166 IYMSKCNFS  174 (517)
Q Consensus       166 L~L~~n~l~  174 (517)
                      |+++.|.+.
T Consensus       265 LNlsWc~l~  273 (419)
T KOG2120|consen  265 LNLSWCFLF  273 (419)
T ss_pred             cCchHhhcc
Confidence            666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=9.3e-06  Score=70.44  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=29.2

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS  174 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~  174 (517)
                      +...+||++|.+ ..++ .|..++.|.+|.|.+|+|+.+.|.--..+++|+.|.|.+|+|.
T Consensus        43 ~~d~iDLtdNdl-~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDL-RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccch-hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            445555555555 2222 3455555555555555555444433333445555555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.92  E-value=1.7e-05  Score=68.90  Aligned_cols=110  Identities=16%  Similarity=0.133  Sum_probs=69.2

Q ss_pred             CCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccC
Q 036049          137 TRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNM  216 (517)
Q Consensus       137 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l  216 (517)
                      .+...+||++|.+..  -+.|..++.|.+|.|++|+|+.+-|.--.-+++|+.|.+.+|++.....+.     .+..  +
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-----pLa~--~  112 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-----PLAS--C  112 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-----hhcc--C
Confidence            456677788877763  334667777888888888887655554455677788888887776211111     1122  6


Q ss_pred             CCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCc
Q 036049          217 QNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNR  264 (517)
Q Consensus       217 ~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~  264 (517)
                      +.|++|.+-+|.++.....-         ...+..+|+|++||++.-.
T Consensus       113 p~L~~Ltll~Npv~~k~~YR---------~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYR---------LYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CccceeeecCCchhcccCce---------eEEEEecCcceEeehhhhh
Confidence            77888888887776643321         1124667788888877644

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=7e-05  Score=73.59  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCC-cccccccccccCCccc
Q 036049           85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFN-NFSGDLLGSIGNLRSL  163 (517)
Q Consensus        85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n-~i~~~~p~~~~~l~~L  163 (517)
                      .+.+++.|++++|.++.  +|    .++++|++|++++|.-...+|+.+.  .+|++|++++| .+. .+|.      +|
T Consensus        50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence            35667777777776665  44    2344677777776544455565442  56777777776 443 3443      45


Q ss_pred             cEEEccccccc--ccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCC
Q 036049          164 EAIYMSKCNFS--GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG  241 (517)
Q Consensus       164 ~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~  241 (517)
                      +.|+++.+...  +.+|.      +|+.|.+.+++...    ...+|..+    .++|++|++++|.....+..      
T Consensus       115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~----~~~lp~~L----PsSLk~L~Is~c~~i~LP~~------  174 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPEN----QARIDNLI----SPSLKTLSLTGCSNIILPEK------  174 (426)
T ss_pred             ceEEeCCCCCcccccCcc------hHhheecccccccc----cccccccc----CCcccEEEecCCCcccCccc------
Confidence            66666655432  12332      35555554322100    00111100    25677888877765433211      


Q ss_pred             CCCCCCCCCCCCcccEEEccCC
Q 036049          242 NNEEPRTGCGFSKLRIIDLSDN  263 (517)
Q Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N  263 (517)
                               -..+|+.|+++.+
T Consensus       175 ---------LP~SLk~L~ls~n  187 (426)
T PRK15386        175 ---------LPESLQSITLHIE  187 (426)
T ss_pred             ---------ccccCcEEEeccc
Confidence                     1246777777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.75  E-value=6.3e-06  Score=74.60  Aligned_cols=69  Identities=20%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             ccCCCCCCeEeCcCccccccC----ChhccCCCCCCeeeCCCCcccccCccc----c--ccCCCCCEEeccCCcccccC
Q 036049          346 ISNLKGLQVLNLHNNNLQGHI----PSCLGNLTNLESLDLSNNKFSGRIPQQ----L--VELTFLAFFNVSDNYLTGLI  414 (517)
Q Consensus       346 ~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~----l--~~l~~L~~L~l~~N~l~~~~  414 (517)
                      +..+.+|+.|||..|-++..-    ...+...+.|+.|.+..|-++..-..+    |  ...|+|+.|...+|.+.+-+
T Consensus       210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence            345688999999999887322    234455677899999999887543322    2  13578999999999877554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=3e-05  Score=82.53  Aligned_cols=143  Identities=21%  Similarity=0.219  Sum_probs=100.6

Q ss_pred             CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcc-cCCccCCCCCCCcEEEccCCcccccccccccCCcccc
Q 036049           86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG-KVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE  164 (517)
Q Consensus        86 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~  164 (517)
                      -.+|++||+++...-...-|..++.+.|.|+.|.+++-.+.. ..-....++++|..||+|+++++..  ..++.|++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            457899999887654444667788888899999998866622 1223356789999999999999843  6788999999


Q ss_pred             EEEcccccccc-cCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCccccc
Q 036049          165 AIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF  232 (517)
Q Consensus       165 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  232 (517)
                      +|.+.+=.+.. ..-..+.+|++|++||+|.........+....-+.-.  .+++|+.||.|++.+...
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~--~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM--VLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc--cCccccEEecCCcchhHH
Confidence            99988877653 2234677899999999998765532211111111111  288999999998877653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.08  E-value=0.00018  Score=65.30  Aligned_cols=65  Identities=23%  Similarity=0.236  Sum_probs=29.6

Q ss_pred             CCCCCCCcEEEccCC--cccccccccccCCccccEEEccccccccc-CchhhhcCCcccccccccccC
Q 036049          133 IGNFTRLQFLYLGFN--NFSGDLLGSIGNLRSLEAIYMSKCNFSGQ-ITSSLRNLTELVVLDMAQNSY  197 (517)
Q Consensus       133 ~~~l~~L~~L~Ls~n--~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~N~l  197 (517)
                      |-.|++|++|.++.|  ++.+.++....++++|++|++++|++... --..+..+.+|..|++..|..
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence            344555555555555  44433333334445555555555555410 001123344444555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=4.2e-05  Score=69.65  Aligned_cols=100  Identities=27%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccc-cccccCCcccc
Q 036049           86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLE  164 (517)
Q Consensus        86 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~  164 (517)
                      +.+.+.|++.++.+++.    .+..-++.|++|.|+-|+|+..-|  |..+++|++|+|..|.|.... -..+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            33445555555555442    223222356666666666543322  455666666666666655311 12244566666


Q ss_pred             EEEcccccccccCch-----hhhcCCcccccc
Q 036049          165 AIYMSKCNFSGQITS-----SLRNLTELVVLD  191 (517)
Q Consensus       165 ~L~L~~n~l~~~~p~-----~l~~l~~L~~L~  191 (517)
                      .|.|..|.-.+.-+.     .+.-+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            666666654433332     234455555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.96  E-value=0.0029  Score=52.58  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=20.5

Q ss_pred             CCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          133 IGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       133 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      |.++++|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            44444444444442 233333334444444555544443 332333344444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.93  E-value=0.0036  Score=52.00  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=36.5

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      +++.+.+.. .+......  +|..+++|+.+.+..+ +..  ++...+....+|+.+.+.+ .+.......|..+++|+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~--~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGEN--AFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T--EEEETS-T--EE-TT--TTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCEEEECC-CeeEeChh--hccccccccccccccc-ccc--cceeeeecccccccccccc-cccccccccccccccccc
Confidence            445555543 33333333  4555555555555543 332  3333333322455555543 222222334445555555


Q ss_pred             EEccCCcccccccccccCCccccEEEccc
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSK  170 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~  170 (517)
                      +++..+ +.......|.+. +|+.+.+..
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            555443 333333444444 555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.93  E-value=0.00044  Score=62.82  Aligned_cols=77  Identities=22%  Similarity=0.261  Sum_probs=37.4

Q ss_pred             CCcEEEccCC--CCcccCCccCCCCCCCcEEEccCCccccccccc---ccCCccccEEEcccccccccCc---hhhhcCC
Q 036049          114 SLKLLDLRSC--GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGS---IGNLRSLEAIYMSKCNFSGQIT---SSLRNLT  185 (517)
Q Consensus       114 ~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~  185 (517)
                      +|+.|.++.|  ++.+.++.....+++|++|++++|+|..  +.+   +..+.+|..|++.+|..+..--   ..|.-++
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            5555555555  3333333333344555555665555542  222   3345556667776666553111   2344455


Q ss_pred             ccccccc
Q 036049          186 ELVVLDM  192 (517)
Q Consensus       186 ~L~~L~l  192 (517)
                      +|++||-
T Consensus       144 ~L~~LD~  150 (260)
T KOG2739|consen  144 SLKYLDG  150 (260)
T ss_pred             hhccccc
Confidence            5555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.00016  Score=65.94  Aligned_cols=57  Identities=18%  Similarity=0.086  Sum_probs=27.4

Q ss_pred             CCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       138 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      +.+.|++.++.+.++  .-..+|+.|++|.|+-|.|+..-  .|..+++|++|+|..|.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence            344445555544421  12334555555555555555322  2445555555555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.40  E-value=0.00012  Score=70.38  Aligned_cols=64  Identities=25%  Similarity=0.179  Sum_probs=38.6

Q ss_pred             cCCCCCCeEeCcCccccccC-----ChhccCCCCCCeeeCCCCcccc-cCccccccCCCCCEEeccCCcc
Q 036049          347 SNLKGLQVLNLHNNNLQGHI-----PSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLAFFNVSDNYL  410 (517)
Q Consensus       347 ~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~l~~N~l  410 (517)
                      .+++.|++|.|+++.+-...     ...-..+..|+.+.|+++.... ..-+.+...++|+.+++-+++-
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            35677888888877543111     1122346678888888876542 2334456667788877777653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.77  E-value=0.0046  Score=33.56  Aligned_cols=12  Identities=42%  Similarity=0.620  Sum_probs=5.3

Q ss_pred             CcEEEccCCccc
Q 036049          139 LQFLYLGFNNFS  150 (517)
Q Consensus       139 L~~L~Ls~n~i~  150 (517)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.54  E-value=0.0054  Score=33.27  Aligned_cols=19  Identities=47%  Similarity=0.749  Sum_probs=9.3

Q ss_pred             CCeEeCcCccccccCChhcc
Q 036049          352 LQVLNLHNNNLQGHIPSCLG  371 (517)
Q Consensus       352 L~~L~Ls~N~l~~~~p~~l~  371 (517)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.24  E-value=0.00023  Score=72.54  Aligned_cols=61  Identities=28%  Similarity=0.388  Sum_probs=37.8

Q ss_pred             hhhhhCCCCCCccc----CcccccCC-CCCCeEeCcCccccccC----ChhccCCCCCCeeeCCCCcccc
Q 036049          328 LAGIILSNKSFDGA----IPASISNL-KGLQVLNLHNNNLQGHI----PSCLGNLTNLESLDLSNNKFSG  388 (517)
Q Consensus       328 L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~  388 (517)
                      +..+++..|.+.+.    ..+.+..+ ..+++++++.|.|+..-    ...+..++.++.|.+++|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            45567777766532    22334444 56777888888776433    3344566777888888887764

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.93  E-value=0.00022  Score=72.73  Aligned_cols=87  Identities=28%  Similarity=0.383  Sum_probs=59.9

Q ss_pred             hhhhhhhCCCCCCccc----CcccccCCCC-CCeEeCcCcccccc----CChhccCC-CCCCeeeCCCCccccc----Cc
Q 036049          326 DILAGIILSNKSFDGA----IPASISNLKG-LQVLNLHNNNLQGH----IPSCLGNL-TNLESLDLSNNKFSGR----IP  391 (517)
Q Consensus       326 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~----~p  391 (517)
                      ..+++|.+++|.++..    +...+...+. +..|++++|++.+.    ....+..+ ..++.++++.|.|+..    +.
T Consensus       204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~  283 (478)
T KOG4308|consen  204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA  283 (478)
T ss_pred             ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence            4466666666665521    1123344455 77799999998743    23345555 7889999999999864    34


Q ss_pred             cccccCCCCCEEeccCCcccc
Q 036049          392 QQLVELTFLAFFNVSDNYLTG  412 (517)
Q Consensus       392 ~~l~~l~~L~~L~l~~N~l~~  412 (517)
                      ..+...+.++.+.+++|++..
T Consensus       284 ~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  284 EVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHhhhHHHHHhhcccCcccc
Confidence            556667899999999999863

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.44  E-value=0.0049  Score=59.78  Aligned_cols=86  Identities=19%  Similarity=0.184  Sum_probs=35.3

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCC-CCCCCchhhhhcccCCcEEEccCCCC-cccCCc-cCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDF-NSSEIQPEIINLSCSLKLLDLRSCGF-WGKVPH-SIGNFT  137 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~-~~~~l~  137 (517)
                      +.++.|.+.+..-.+.-+.-....++++++.|++.+... ++. .-..+....++|++|++..|.. +...-. ....++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~-s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS-SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH-HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            345555555554333222212334455555555555432 211 1122333333555555555332 111111 123445


Q ss_pred             CCcEEEccCC
Q 036049          138 RLQFLYLGFN  147 (517)
Q Consensus       138 ~L~~L~Ls~n  147 (517)
                      +|++|+++++
T Consensus       217 kL~~lNlSwc  226 (483)
T KOG4341|consen  217 KLKYLNLSWC  226 (483)
T ss_pred             hHHHhhhccC
Confidence            5555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.42  E-value=0.00096  Score=59.44  Aligned_cols=57  Identities=18%  Similarity=-0.029  Sum_probs=26.1

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN  172 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~  172 (517)
                      .|..|+++.|.+ ...|..++.+..++.+++..|..+ ..|.+++++++++++++..|.
T Consensus        66 ~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   66 RLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             HHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence            444444444444 334444444444444444444444 344444444444444444444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.78  E-value=0.073  Score=26.72  Aligned_cols=13  Identities=62%  Similarity=0.968  Sum_probs=5.3

Q ss_pred             cccEEEccCCcCC
Q 036049          254 KLRIIDLSDNRFT  266 (517)
Q Consensus       254 ~L~~L~Ls~N~l~  266 (517)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.16  E-value=0.16  Score=28.67  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=13.7

Q ss_pred             CCCCCEEEcCCCCCCCCCCchhhh
Q 036049           86 LVHLEWLNLALNDFNSSEIQPEII  109 (517)
Q Consensus        86 l~~L~~L~Ls~n~l~~~~~~~~~~  109 (517)
                      +++|++|+|++|+++.  +|+..+
T Consensus         1 L~~L~~L~L~~N~l~~--lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSS--LPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCc--CCHHHc
Confidence            3466777777777665  565544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.16  E-value=0.16  Score=28.67  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=13.7

Q ss_pred             CCCCCEEEcCCCCCCCCCCchhhh
Q 036049           86 LVHLEWLNLALNDFNSSEIQPEII  109 (517)
Q Consensus        86 l~~L~~L~Ls~n~l~~~~~~~~~~  109 (517)
                      +++|++|+|++|+++.  +|+..+
T Consensus         1 L~~L~~L~L~~N~l~~--lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSS--LPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCc--CCHHHc
Confidence            3466777777777665  565544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.14  E-value=0.14  Score=28.84  Aligned_cols=22  Identities=41%  Similarity=0.748  Sum_probs=15.4

Q ss_pred             CcccEEEccCCcCCCCCChhhhh
Q 036049          253 SKLRIIDLSDNRFTGKLPSKSFL  275 (517)
Q Consensus       253 ~~L~~L~Ls~N~l~~~~p~~~~~  275 (517)
                      ++|++|+|++|++. .+|...|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            46777888888777 67766553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.14  E-value=0.14  Score=28.84  Aligned_cols=22  Identities=41%  Similarity=0.748  Sum_probs=15.4

Q ss_pred             CcccEEEccCCcCCCCCChhhhh
Q 036049          253 SKLRIIDLSDNRFTGKLPSKSFL  275 (517)
Q Consensus       253 ~~L~~L~Ls~N~l~~~~p~~~~~  275 (517)
                      ++|++|+|++|++. .+|...|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            46777888888777 67766553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.05  E-value=0.0078  Score=53.81  Aligned_cols=63  Identities=21%  Similarity=0.224  Sum_probs=29.5

Q ss_pred             CCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          134 GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       134 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      ......+.||++.|++. .+-..|+.++.|..|+++.|.+. ..|..++.+..+..+++..|..+
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~  101 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS  101 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh
Confidence            33344444555544444 23334444445555555555544 44445555444555544444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.17  E-value=0.11  Score=28.69  Aligned_cols=13  Identities=31%  Similarity=0.342  Sum_probs=5.0

Q ss_pred             CCcEEEccCCccc
Q 036049          138 RLQFLYLGFNNFS  150 (517)
Q Consensus       138 ~L~~L~Ls~n~i~  150 (517)
                      +|++|+|++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.83  E-value=0.064  Score=47.16  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND   98 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~   98 (517)
                      .|+.+|-++..|...--+  .+.+++.++.|.+.++.
T Consensus       102 ~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHH--HHhccchhhhheecccc
Confidence            467777777766543222  45555555566555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.63  E-value=0.071  Score=46.90  Aligned_cols=80  Identities=21%  Similarity=0.212  Sum_probs=41.3

Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccc-ccCChhcc-CCCCCCeeeCCCC-cccccCccccccCCCCCEEe
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLG-NLTNLESLDLSNN-KFSGRIPQQLVELTFLAFFN  404 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~  404 (517)
                      ++.+|-++..|..+--+.+.+++.++.|.+.+|.-- +.--+.++ -.++|+.|+|++| +|+..--..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            455566666655544455556666666666665321 10001111 2356677777766 45543334455566666665


Q ss_pred             ccC
Q 036049          405 VSD  407 (517)
Q Consensus       405 l~~  407 (517)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=83.46  E-value=0.49  Score=48.97  Aligned_cols=110  Identities=20%  Similarity=0.108  Sum_probs=55.9

Q ss_pred             CCcEEEccCCCCccc--CCccCCCCCCCcEEEccCC-cccccc----cccccCCccccEEEccccc-ccccCchhhhc-C
Q 036049          114 SLKLLDLRSCGFWGK--VPHSIGNFTRLQFLYLGFN-NFSGDL----LGSIGNLRSLEAIYMSKCN-FSGQITSSLRN-L  184 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n-~i~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~-l  184 (517)
                      .|+.|.+..+.-...  .-.....+++|+.|+++++ ......    ......+++|+.|+++.+. ++...-..+.. +
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence            666666666543222  1223455677777777652 111111    1122345677777777776 44333333332 5


Q ss_pred             Cccccccccccc-CcceeccccccccccccccCCCCCeEeccCCccc
Q 036049          185 TELVVLDMAQNS-YGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLT  230 (517)
Q Consensus       185 ~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  230 (517)
                      ++|++|.+..+. ++..     .+-.....  +++|++|+++++...
T Consensus       269 ~~L~~L~l~~c~~lt~~-----gl~~i~~~--~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  269 PNLETLSLSNCSNLTDE-----GLVSIAER--CPSLRELDLSGCHGL  308 (482)
T ss_pred             CCcceEccCCCCccchh-----HHHHHHHh--cCcccEEeeecCccc
Confidence            677777765554 3310     11111222  677888888776543

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=83.21  E-value=1.5  Score=27.02  Aligned_cols=18  Identities=11%  Similarity=0.060  Sum_probs=8.4

Q ss_pred             hhhhHHHHHHHHHHHHhh
Q 036049          475 GYAGGLVAGLVLGFNFST  492 (517)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~  492 (517)
                      ++++++++++++.++++.
T Consensus         7 aIIv~V~vg~~iiii~~~   24 (38)
T PF02439_consen    7 AIIVAVVVGMAIIIICMF   24 (38)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            444455555544444443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	517
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-21
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-20
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-09

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 180/465 (38%), Gaps = 107/465 (23%)
Query: 82  SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRS-----------C------- 123
           +L K+  L+ L+L+ N+F S E+   + NLS SL  LDL S           C       
Sbjct: 335 TLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 124 --------GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL--------------- 160
                   GF GK+P ++ N + L  L+L FN  SG +  S+G+L               
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 161 ---------RSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWL 211
                    ++LE + +   + +G+I S L N T L  + ++ N       + G++ KW+
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN------RLTGEIPKWI 507
Query: 212 LDPNMQXXXXXXXXXXXXTGFDQHLVLLPGNNEE-----PRTGCGFSKLRIIDLSDNRFT 266
                              G  ++L +L  +N       P        L  +DL+ N F 
Sbjct: 508 -------------------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 267 GKLPSKSFLCWNAMKIVNASELRYLQ--------------DVLSPSG--KXXXXXXXXXX 310
           G +P+  F     +     +  RY+               ++L   G             
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 311 XXNIKGRMMAYNKIPDI-----LAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXX 365
             NI  R+   +  P       +  + +S     G IP  I ++                
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 366 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
           IP  +G+L  L  LDLS+NK  GRIPQ +  LT L   ++S+N L+G IP+  QF TF  
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 728
Query: 426 TSFDGNSGLCGKPLSKGCE----SGEAPSNEDHTEGSEESLFSGA 466
             F  N GLCG PL + C+     G A     H    E   F GA
Sbjct: 729 AKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRLENLYFQGA 772

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 177/448 (39%), Gaps = 107/448 (23%)
Query: 82  SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRS-----------C------- 123
           +L K+  L+ L+L+ N+F S E+   + NLS SL  LDL S           C       
Sbjct: 338 TLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 124 --------GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL--------------- 160
                   GF GK+P ++ N + L  L+L FN  SG +  S+G+L               
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 161 ---------RSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWL 211
                    ++LE + +   + +G+I S L N T L  + ++ N       + G++ KW+
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN------RLTGEIPKWI 510
Query: 212 LDPNMQXXXXXXXXXXXXTGFDQHLVLLPGNNEE-----PRTGCGFSKLRIIDLSDNRFT 266
                              G  ++L +L  +N       P        L  +DL+ N F 
Sbjct: 511 -------------------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 267 GKLPSKSFLCWNAMKIVNASELRYLQ--------------DVLSPSG--KXXXXXXXXXX 310
           G +P+  F     +     +  RY+               ++L   G             
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 311 XXNIKGRMMAYNKIPDI-----LAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXX 365
             NI  R+   +  P       +  + +S     G IP  I ++                
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 366 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
           IP  +G+L  L  LDLS+NK  GRIPQ +  LT L   ++S+N L+G IP+  QF TF  
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731
Query: 426 TSFDGNSGLCGKPLSKGCESGEAPSNED 453
             F  N GLCG PL + C+    PSN D
Sbjct: 732 AKFLNNPGLCGYPLPR-CD----PSNAD 754

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 38/65 (58%)
Query: 375 NLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGL 434
           NL  LDL NN+  G +PQ L +L FL   NVS N L G IPQG     FD +++  N  L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 435 CGKPL 439
           CG PL
Sbjct: 305 CGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	517
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  300 bits (770), Expect = 1e-93
 Identities = 110/423 (26%), Positives = 180/423 (42%), Gaps = 44/423 (10%)

Query: 60  TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLD 119
           +  ++ L+LS +   G I  +        L+ L L  N F + +I P + N S  L  L 
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCS-ELVSLH 424

Query: 120 LRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS 179
           L      G +P S+G+ ++L+ L L  N   G++   +  +++LE + +   + +G+I S
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

Query: 180 SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLL 239
            L N T L  + ++ N       + G++ KW+    ++NL  L LS+N  +G   ++   
Sbjct: 485 GLSNCTNLNWISLSNNR------LTGEIPKWIG--RLENLAILKLSNNSFSG---NI--- 530

Query: 240 PGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMK-----------IVNASEL 288
                 P        L  +DL+ N F G +P+  F     +            I N    
Sbjct: 531 ------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 289 RYLQDVLSPS----------GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSF 338
           +      +             +L       + +    G           +  + +S    
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 339 DGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT 398
            G IP  I ++  L +LNL +N++ G IP  +G+L  L  LDLS+NK  GRIPQ +  LT
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 399 FLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAPSNEDHTEGS 458
            L   ++S+N L+G IP+  QF TF    F  N GLCG PL + C+   A     H    
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSH 763

Query: 459 EES 461
              
Sbjct: 764 HHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  231 bits (591), Expect = 8e-68
 Identities = 102/428 (23%), Positives = 162/428 (37%), Gaps = 89/428 (20%)

Query: 3   PLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGH 62
                 E   L+ FK+              +  +  W     N + C++DGV C      
Sbjct: 7   SQSLYREIHQLISFKDV----------LPDKNLLPDWSS---NKNPCTFDGVTCR--DDK 51

Query: 63  VVKLNLSHSCLFGSINS-SSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
           V  ++LS   L    ++ SSSL  L  LE L L+ +  N S         + SL  LDL 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFKCSA-SLTSLDLS 108

Query: 122 SCGFWGKVP--HSIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLEAIYMSKCNFSGQIT 178
                G V    S+G+ + L+FL +  N       +     L SLE + +S  + SG   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 179 SSLR---NLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQH 235
                     EL  L ++ N   G +++              NL  L++S N  +     
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDVS----------RCVNLEFLDVSSNNFSTG--- 215

Query: 236 LVLLP--GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD 293
              +P  G+          S L+ +D+S N+ +G              I   +EL+ L  
Sbjct: 216 ---IPFLGD---------CSALQHLDISGNKLSGDFSRA---------ISTCTELKLL-- 252

Query: 294 VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI----LAGIILSNKSFDGAIPASIS-N 348
                          + +    G       IP +    L  + L+   F G IP  +S  
Sbjct: 253 --------------NISSNQFVG------PIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 349 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLAFFNVSD 407
              L  L+L  N+  G +P   G+ + LESL LS+N FSG +P   L+++  L   ++S 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 408 NYLTGLIP 415
           N  +G +P
Sbjct: 353 NEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (459), Expect = 2e-49
 Identities = 88/355 (24%), Positives = 133/355 (37%), Gaps = 78/355 (21%)

Query: 66  LNLSHSCLFGSINSSSSLY-KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
           L+LS + + G+      L      L+ L ++ N  +      ++     +L+ LD+ S  
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD---VDVSRCV-NLEFLDVSSNN 211

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
           F   +P  +G+ + LQ L +  N  SGD   +I     L+ + +S   F G I      L
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244
             L  L +A+N         G++  +L       L  L+LS N   G             
Sbjct: 269 KSLQYLSLAENK------FTGEIPDFLSG-ACDTLTGLDLSGNHFYG------------A 309

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
            P      S L  + LS N F+G+LP  + L            L+ L             
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLL--------KMRGLKVLD------------ 349

Query: 305 TYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG-LQVLNLHNNNLQ 363
                                       LS   F G +P S++NL   L  L+L +NN  
Sbjct: 350 ----------------------------LSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 364 GHIPSCLGN--LTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
           G I   L       L+ L L NN F+G+IP  L   + L   ++S NYL+G IP 
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.5 bits (158), Expect = 4e-11
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 352 LQVLNLHNNNLQ---GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN 408
           +  ++L +  L      + S L +LT LESL LSN+  +G +         L   ++S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 409 YLTGLIPQGKQFA 421
            L+G +       
Sbjct: 111 SLSGPVTTLTSLG 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  230 bits (589), Expect = 6e-72
 Identities = 107/442 (24%), Positives = 156/442 (35%), Gaps = 138/442 (31%)

Query: 4   LCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCC--SWDGVHCNK--N 59
           LC+  ++ ALLQ K+  +             T++SW P     DCC  +W GV C+    
Sbjct: 2   LCNPQDKQALLQIKKD-LGNP---------TTLSSWLP---TTDCCNRTWLGVLCDTDTQ 48

Query: 60  TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLD 119
           T  V  L+LS   L       SSL  L +L +L +     N+                  
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG--GINN------------------ 88

Query: 120 LRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS 179
                  G +P +I   T+L +LY+   N SG +   +  +++L  +  S    SG +  
Sbjct: 89  -----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 180 SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLL 239
           S+ +L                                 NL  +    N ++G        
Sbjct: 144 SISSLP--------------------------------NLVGITFDGNRISG-------- 163

Query: 240 PGNNEEPRTGCGFSKL-RIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
                 P +   FSKL   + +S NR TGK+P                    L       
Sbjct: 164 ----AIPDSYGSFSKLFTSMTISRNRLTGKIPP---------------TFANLN------ 198

Query: 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLH 358
                                        LA + LS    +G       + K  Q ++L 
Sbjct: 199 -----------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 359 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGK 418
            N+L   +   +G   NL  LDL NN+  G +PQ L +L FL   NVS N L G IPQG 
Sbjct: 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 419 QFATFDNTSFDGNSGLCGKPLS 440
               FD +++  N  LCG PL 
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLP 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (395), Expect = 3e-41
 Identities = 64/496 (12%), Positives = 146/496 (29%), Gaps = 139/496 (28%)

Query: 8   DERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLN 67
            +  AL +  ++ ++G  ++ +       A+W   +      +  GV  N + G V  L+
Sbjct: 30  KDYLALKEIWDA-LNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLS 87

Query: 68  LSHSCLFGSINSS--------------------------SSLYKLVHLEWLNLALNDFNS 101
           L      G +  +                            +   +  E        +  
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 102 SEIQ------------------------PEIINLSCSLKLLDLRSCGFWGKVPHSIGNFT 137
           + +                          +   ++     +   S      V  ++   T
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT 206

Query: 138 RLQFLYLGFNNFSGDLLG-------------------SIGNLRSLEAIYMSKCNFSGQIT 178
           +L+  Y+G + F  + +                       NL+ L  + +  C    ++ 
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL 238
           + L+ L E+ ++++A N      +++         P  + +  + + +N L  F      
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF------ 320

Query: 239 LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
                    +     KL +++   N+  GKLP+            +  +L  L       
Sbjct: 321 -----PVETSLQKMKKLGMLECLYNQLEGKLPA----------FGSEIKLASLN------ 359

Query: 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGII----------LSNKSFDGAIPA--SI 346
                               +AYN+I +I A              ++      IP     
Sbjct: 360 --------------------LAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA 398

Query: 347 SNLKGLQVLNLHNNNLQG-------HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTF 399
            ++  +  ++   N +          +        N+ S++LSNN+ S    +     + 
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 400 LAFFNVSDNYLTGLIP 415
           L+  N+  N LT +  
Sbjct: 459 LSSINLMGNMLTEIPK 474

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (364), Expect = 5e-37
 Identities = 46/368 (12%), Positives = 106/368 (28%), Gaps = 89/368 (24%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
           +  + +S            ++  + E+               +  NL   L  +++ +C 
Sbjct: 210 QFYMGNSPFVAENICE--AWENENSEYAQ------QYKTEDLKWDNLK-DLTDVEVYNCP 260

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNF--------SGDLLGSIGNLRSLEAIYMSKCNF-SG 175
              K+P  +     +Q + +  N              L        ++ IY+   N  + 
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 176 QITSSLRNLTELVVLDMAQNSYGGTM-EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQ 234
            + +SL+ + +L +L+   N   G +              +   L +LNL++N +T    
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFG----------SEIKLASLNLAYNQITE--- 367

Query: 235 HLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDV 294
               +P             ++  +  + N+    +P+            + S +  +   
Sbjct: 368 ----IP-----ANFCGFTEQVENLSFAHNKLKY-IPNIFDAK-------SVSVMSAID-- 408

Query: 295 LSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQV 354
                                    +YN+I  +              +  +      +  
Sbjct: 409 ------------------------FSYNEIGSVDGKNFDP-------LDPTPFKGINVSS 437

Query: 355 LNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-------RIPQQLVELTFLAFFNVSD 407
           +NL NN +           + L S++L  N  +           +       L   ++  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 408 NYLTGLIP 415
           N LT L  
Sbjct: 498 NKLTKLSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (353), Expect = 1e-35
 Identities = 58/382 (15%), Positives = 118/382 (30%), Gaps = 81/382 (21%)

Query: 65  KLNLSH------SCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLL 118
            +N++         L     + +       ++ + +  N+  +  ++  +  +   L +L
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGML 335

Query: 119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QI 177
           +       G    + G+  +L  L L +N  +       G    +E +  +         
Sbjct: 336 ECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 178 TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWL--LDP---NMQNLNALNLSHNLLTGF 232
               ++++ +  +D + N      EI     K    LDP      N++++NLS+N ++ F
Sbjct: 395 IFDAKSVSVMSAIDFSYN------EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 233 DQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQ 292
                               S L  I+L  N  T  +P  S    N     N   L  + 
Sbjct: 449 P------------KELFSTGSPLSSINLMGNMLTE-IPKNSLKDENE-NFKNTYLLTSID 494

Query: 293 DVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKI----PDILAG-------IILSNKSFDGA 341
                                     + +NK+     D  A        I LS  SF   
Sbjct: 495 --------------------------LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK- 527

Query: 342 IPASISNLKGLQVLNLHN------NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 395
            P    N   L+   + N      N      P  +    +L  L + +N     + +++ 
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI- 585

Query: 396 ELTFLAFFNVSDNYLTGLIPQG 417
               ++  ++ DN    +    
Sbjct: 586 -TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  133 bits (337), Expect = 2e-33
 Identities = 48/356 (13%), Positives = 98/356 (27%), Gaps = 74/356 (20%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            L   ++ L G + +       + L  LNLA N    +EI       +  ++ L      
Sbjct: 334 MLECLYNQLEGKLPA---FGSEIKLASLNLAYNQI--TEIPANFCGFTEQVENLSFAHNK 388

Query: 125 FWGKVPH--SIGNFTRLQFLYLGFNNFSG-------DLLGSIGNLRSLEAIYMSKCNFSG 175
               +P+     + + +  +   +N            L  +     ++ +I +S    S 
Sbjct: 389 L-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 176 QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQH 235
                    + L  +++  N      +   K        N   L +++L  N LT     
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-NTYLLTSIDLRFNKLTKLSDD 506

Query: 236 LVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVL 295
                              L  IDLS N F+   P++          +N+S L+      
Sbjct: 507 FRA-----------TTLPYLVGIDLSYNSFSK-FPTQ---------PLNSSTLKGF---- 541

Query: 296 SPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVL 355
                                          I               P  I+    L  L
Sbjct: 542 ------------------------------GIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 356 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
            + +N+++  +   +    N+  LD+ +N         +        + +  +   
Sbjct: 572 QIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (388), Expect = 4e-40
 Identities = 66/392 (16%), Positives = 122/392 (31%), Gaps = 70/392 (17%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC--SL 115
           +    +  LN+  + + G    S+    L++L++L+L+ +  +   +  E         L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 116 KLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGS-IGNLRSLEAIYMSKCNFS 174
            +L+L           +      L+ L LG N    +L G     L ++  IY+S   + 
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 175 GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQ 234
               +S   +  L  L + + +      ++           ++NL  L+LS+N +   + 
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVA------LKNVDSSPSPFQPLRNLTILDLSNNNIANIN- 496

Query: 235 HLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDV 294
                           G  KL I+DL  N    +L   +        +   S L  L   
Sbjct: 497 -----------DDMLEGLEKLEILDLQHNNLA-RLWKHANPGGPIYFLKGLSHLHILN-- 542

Query: 295 LSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQV 354
                                                 L +  FD        +L  L++
Sbjct: 543 --------------------------------------LESNGFDEIPVEVFKDLFELKI 564

Query: 355 LNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL-VELTFLAFFNVSDNYLTGL 413
           ++L  NNL     S   N  +L+SL+L  N  +    +        L   ++  N     
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 414 IPQGKQFATFDNTSFDGNSGL-----CGKPLS 440
                 F  + N +      L     C  P  
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (351), Expect = 3e-35
 Identities = 64/367 (17%), Positives = 115/367 (31%), Gaps = 77/367 (20%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
            +  L+LS+S L  + N++    K  +L  L+L+ N+ N   +  +       L+   L 
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV--VGNDSFAWLPQLEYFFLE 280

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDL---------LGSIGNLRSLEAIYMSKCN 172
                    HS+     +++L L  +     +           S   L+ LE + M   +
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 173 FSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF 232
             G  ++    L  L  L ++ +       +    ++  +      L+ LNL+ N ++  
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSF----TSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 233 DQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQ 292
                       E         L ++DL  N    +L  + +             +  + 
Sbjct: 397 ------------ESDAFSWLGHLEVLDLGLNEIGQELTGQEWR--------GLENIFEIY 436

Query: 293 DVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGL 352
                                     ++YNK   +                 S + +  L
Sbjct: 437 --------------------------LSYNKYLQL--------------TRNSFALVPSL 456

Query: 353 QVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYL 410
           Q L L    L+     PS    L NL  LDLSNN  +      L  L  L   ++  N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 411 TGLIPQG 417
             L    
Sbjct: 517 ARLWKHA 523

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (349), Expect = 6e-35
 Identities = 64/376 (17%), Positives = 118/376 (31%), Gaps = 75/376 (19%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
           ++  LNL+H+ L     ++    +   L  L++  N    S+++PE+      LK+L+L+
Sbjct: 26  NITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQ 81

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
                     +    T L  L+L  N+            ++L  + +S    S     + 
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241
             L  L  L ++ N       I+    + L      +L  L LS N +  F         
Sbjct: 142 VQLENLQELLLSNNK------IQALKSEELDIFANSSLKKLELSSNQIKEF--------- 186

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301
               P       +L  + L++ +    L  K  L       +  + +R L          
Sbjct: 187 ---SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE------LANTSIRNLS--------- 228

Query: 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGII------------LSNKSFDGAIPASISNL 349
                            ++ +++                    LS  + +     S + L
Sbjct: 229 -----------------LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI---------PQQLVELTFL 400
             L+   L  NN+Q      L  L N+  L+L  +     I               L  L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 401 AFFNVSDNYLTGLIPQ 416
              N+ DN + G+   
Sbjct: 332 EHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (348), Expect = 6e-35
 Identities = 63/380 (16%), Positives = 118/380 (31%), Gaps = 75/380 (19%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSS-------EIQPEIINLSCS 114
            +    L ++ +      S SL+ L ++ +LNL  +    S       +I          
Sbjct: 273 QLEYFFLEYNNIQHLF--SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 115 LKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIG----NLRSLEAIYMSK 170
           L+ L++      G   +       L++L L  +  S   L +          L  + ++K
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 171 CNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLT 230
              S   + +   L  L VLD+  N      EI  ++        ++N+  + LS+N   
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLN------EIGQELTGQEWR-GLENIFEIYLSYNKYL 443

Query: 231 GFD----------QHLVL----LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLC 276
                        Q L+L    L   +  P        L I+DLS+N     +       
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEG 502

Query: 277 WNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNK 336
              ++I++                                  + +N +        L   
Sbjct: 503 LEKLEILD----------------------------------LQHNNL------ARLWKH 522

Query: 337 SFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE 396
           +  G     +  L  L +LNL +N           +L  L+ +DL  N  +         
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 397 LTFLAFFNVSDNYLTGLIPQ 416
              L   N+  N +T +  +
Sbjct: 583 QVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  136 bits (344), Expect = 2e-34
 Identities = 61/373 (16%), Positives = 116/373 (31%), Gaps = 40/373 (10%)

Query: 59  NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLL 118
              ++ +L LS++ +    +    ++    L+ L L+ N     E  P   +    L  L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI--KEFSPGCFHAIGRLFGL 200

Query: 119 DLRSCGFWGKVPHSIGNF---TRLQFLYLGFNNFSGDLLGSIGNLR--SLEAIYMSKCNF 173
            L +      +   +      T ++ L L  +  S     +   L+  +L  + +S  N 
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 174 SGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233
           +     S   L +L    +  N+      I+      L    + N+  LNL  +      
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNN------IQHLFSHSLH--GLFNVRYLNLKRSFTKQSI 312

Query: 234 QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD 293
               L      +  +      L  +++ DN   G + S  F             L+YL  
Sbjct: 313 SLASL---PKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMF--------TGLINLKYLS- 359

Query: 294 VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ 353
            LS          +   ++         +     L  + L+          + S L  L+
Sbjct: 360 -LS----------NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 354 VLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG 412
           VL+L  N +   +       L N+  + LS NK+          +  L    +    L  
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 413 LIPQGKQFATFDN 425
           +      F    N
Sbjct: 469 VDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (319), Expect = 4e-31
 Identities = 59/325 (18%), Positives = 103/325 (31%), Gaps = 76/325 (23%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
           +L  ++ +L+L           +   +++L  L +GFN  S         L  L+ + + 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDP----NMQNLNALNLS 225
               S     +    T L  L +  NS               +        +NL  L+LS
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQK------------IKNNPFVKQKNLITLDLS 129

Query: 226 HNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNA 285
           HN L+              +  T      L+ + LS+N+    L S+         I   
Sbjct: 130 HNGLSST------------KLGTQVQLENLQELLLSNNKIQA-LKSEEL------DIFAN 170

Query: 286 SELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGII----------LSN 335
           S L+ L+                          ++ N+I +   G            L+N
Sbjct: 171 SSLKKLE--------------------------LSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 336 KSFDGAIPASIS---NLKGLQVLNLHNNNLQGHIPSCLGNL--TNLESLDLSNNKFSGRI 390
                ++   +        ++ L+L N+ L     +    L  TNL  LDLS N  +   
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 391 PQQLVELTFLAFFNVSDNYLTGLIP 415
                 L  L +F +  N +  L  
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFS 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (306), Expect = 2e-29
 Identities = 66/360 (18%), Positives = 111/360 (30%), Gaps = 95/360 (26%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC--SLKLLDLRSC 123
           L+LSH+ L  +   +    +L +L+ L L+ N      ++ E +++    SLK L+L S 
Sbjct: 126 LDLSHNGLSSTKLGT--QVQLENLQELLLSNNKI--QALKSEELDIFANSSLKKLELSSN 181

Query: 124 GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIG---NLRSLEAIYMSKCNFSGQITSS 180
                 P       RL  L+L        L   +       S+  + +S    S    ++
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240
              L                                 NL  L+LS+N L           
Sbjct: 242 FLGL------------------------------KWTNLTMLDLSYNNLNVVG------- 264

Query: 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300
                  +     +L    L  N     L S S              +RYL         
Sbjct: 265 -----NDSFAWLPQLEYFFLEYNNIQH-LFSHSL--------HGLFNVRYLN-------- 302

Query: 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNN 360
                    L  +   + ++   +P I                 S   LK L+ LN+ +N
Sbjct: 303 ---------LKRSFTKQSISLASLPKI--------------DDFSFQWLKCLEHLNMEDN 339

Query: 361 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV----ELTFLAFFNVSDNYLTGLIPQ 416
           ++ G   +    L NL+ L LSN+  S R            + L   N++ N ++ +   
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (286), Expect = 7e-27
 Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 73/307 (23%)

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
           + S ++ D        +VP  +   T +  L L  N        +      L ++ +   
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 172 NFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTG 231
             S       + L  L VL++  N       +   +          NL  L+L  N +  
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNE------LSQ-LSDKTFA-FCTNLTELHLMSNSIQK 111

Query: 232 FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL 291
                                  L  +DLS N  +      + +            L+ L
Sbjct: 112 IK------------NNPFVKQKNLITLDLSHNGLSS-TKLGTQV--------QLENLQEL 150

Query: 292 QDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG 351
                                      ++ NKI  + +  +             I     
Sbjct: 151 L--------------------------LSNNKIQALKSEEL------------DIFANSS 172

Query: 352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL---VELTFLAFFNVSDN 408
           L+ L L +N ++   P C   +  L  L L+N +    + ++L   +  T +   ++S++
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 409 YLTGLIP 415
            L+    
Sbjct: 233 QLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 62/220 (28%)

Query: 218 NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCW 277
           +    + SH  LT     L                + + +++L+ N+    LP+ +F   
Sbjct: 5   SHEVADCSHLKLTQVPDDL---------------PTNITVLNLTHNQLRR-LPAANF--- 45

Query: 278 NAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGII----- 332
                   S+L  L                           + +N I  +   +      
Sbjct: 46  -----TRYSQLTSLD--------------------------VGFNTISKLEPELCQKLPM 74

Query: 333 -----LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387
                L +         + +    L  L+L +N++Q    +      NL +LDLS+N  S
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 388 GRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTS 427
                  V+L  L    +S+N +  L  +      F N+S
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEE--LDIFANSS 172

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  136 bits (344), Expect = 3e-34
 Identities = 49/414 (11%), Positives = 119/414 (28%), Gaps = 62/414 (14%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS--------SEIQPEIINLSCSLK 116
            + L +      +     LY L  L+ LN+A N   S        + +  +       ++
Sbjct: 495 DVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP-KIQ 551

Query: 117 LLDLRSCGFWG-KVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG 175
           +  +            S+    +L  L    N      L + G    L  + +       
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEE 609

Query: 176 QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQH 235
                     ++  L  + N       ++  +       ++  + +++ S+N +      
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNK------LKY-IPNIFNAKSVYVMGSVDFSYNKIGS---- 658

Query: 236 LVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE--LRYLQD 293
                 N               + LS N      P++ F   + +  +  S   +  + +
Sbjct: 659 ---EGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPE 714

Query: 294 VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI-----------LAGIILSNKSFDGAI 342
                          L T+++      +NK+  +           L+ + +S   F    
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDL-----RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-F 768

Query: 343 PASISNLKGLQVLNL------HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE 396
           P    N   L+   +        N +    P+ +    +L  L + +N     + ++L  
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL-- 825

Query: 397 LTFLAFFNVSDNYLTGL-IPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEAP 449
              L   +++DN    + +     +          +         +GC++    
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD----KTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  134 bits (339), Expect = 1e-33
 Identities = 52/373 (13%), Positives = 110/373 (29%), Gaps = 71/373 (19%)

Query: 66  LNLSHSCLFGSINS----SSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
           ++L  + +    N     S ++ +L  L+ +  A + F          N++   +  +  
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-------DNIAVDWEDANSD 475

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG------ 175
               +     S  N   L  + L        L   + +L  L+++ ++            
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 176 ---QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF 232
              ++        ++ +  M  N+      +E       L   M  L  L+  HN +   
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNN------LEEFPASASL-QKMVKLGLLDCVHNKVR-- 586

Query: 233 DQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS--ELRY 290
                                KL  + L  N+    +P       + ++ +  S  +L+Y
Sbjct: 587 ------------HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 291 LQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLK 350
           + ++ +     +M + D            +YNKI      I  S   +            
Sbjct: 634 IPNIFNAKSVYVMGSVD-----------FSYNKIGSEGRNISCSMDDY---------KGI 673

Query: 351 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS-------GRIPQQLVELTFLAFF 403
               + L  N +Q          + + ++ LSNN  +                   L   
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 404 NVSDNYLTGLIPQ 416
           ++  N LT L   
Sbjct: 734 DLRFNKLTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (311), Expect = 5e-30
 Identities = 47/421 (11%), Positives = 111/421 (26%), Gaps = 88/421 (20%)

Query: 8   DERSALLQFKESR--ISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNK--NTGHV 63
            +  AL    E+    +  +Y+   +      +W     N +   W         N G V
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNF---NKELDMWGDQPGVDLDNNGRV 325

Query: 64  VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSC 123
             L+L+     G +    ++ +L  L+ L+   +  + +       +   +  + +    
Sbjct: 326 TGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTH--SETVSGRLFGDEELTPDMSEE--- 378

Query: 124 GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRN 183
                         R   + + +     D    +     L+               S  +
Sbjct: 379 --------------RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424

Query: 184 LTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF-------DQHL 236
           L +  + ++       +  I+           +  L  +  +++  T         D + 
Sbjct: 425 LKDTQIGNLTNRITFISKAIQ----------RLTKLQIIYFANSPFTYDNIAVDWEDANS 474

Query: 237 VLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLS 296
                   E  +      L  ++L +     +LP           + +  EL+ L     
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD---------FLYDLPELQSLN---- 521

Query: 297 PSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLN 356
                                 +A N+            +     +         +Q+  
Sbjct: 522 ----------------------IACNRGISAAQLKADWTR-----LADDEDTGPKIQIFY 554

Query: 357 LHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
           +  NNL+     + L  +  L  LD  +NK      +       L    +  N +  +  
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 416 Q 416
            
Sbjct: 613 D 613

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 44/347 (12%), Positives = 95/347 (27%), Gaps = 84/347 (24%)

Query: 93  NLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGD 152
           N+ +    ++E   +   L    + LD ++  ++    ++  +     F     + +   
Sbjct: 256 NVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQ 314

Query: 153 LLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLL 212
               + N   +  + ++     G++  ++  LTEL VL    +S   +  + G       
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 213 DPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK 272
               +          +   +DQ L                S L    ++ N     +   
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRL--------------NLSDLLQDAINRNPEMKPIKKD 420

Query: 273 SFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGII 332
           S +     +I N +                                   N+I        
Sbjct: 421 SRISLKDTQIGNLT-----------------------------------NRI-------- 437

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQG-------------------HIPSCLGNL 373
                    I  +I  L  LQ++   N+                       +      NL
Sbjct: 438 -------TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 374 TNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQF 420
            +L  ++L N     ++P  L +L  L   N++ N           +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (329), Expect = 1e-32
 Identities = 59/388 (15%), Positives = 116/388 (29%), Gaps = 85/388 (21%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLS----CSLKL 117
            + KL L ++    ++   + +  L  LE   L L +F +     +    +    C+L +
Sbjct: 201 RLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 118 LDLRSC---GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNF- 173
            + R      +   +       T +    L         +         + + +  C F 
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFG 317

Query: 174 ------------------SGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPN 215
                              G    S  +L  L  LD+++N     +  +G   +      
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG----LSFKGCCSQSDF--G 371

Query: 216 MQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL 275
             +L  L+LS N +     +               G  +L  +D   +          FL
Sbjct: 372 TTSLKYLDLSFNGVITMSSNF-------------LGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 276 CWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAG----- 330
                   +   L YL                 +   + +           I  G     
Sbjct: 419 --------SLRNLIYL----------------DISHTHTRV------AFNGIFNGLSSLE 448

Query: 331 -IILSNKSFDGAI-PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 388
            + ++  SF     P   + L+ L  L+L    L+   P+   +L++L+ L++S+N F  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 389 RIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
                   L  L   + S N++     Q
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  129 bits (327), Expect = 3e-32
 Identities = 66/360 (18%), Positives = 108/360 (30%), Gaps = 69/360 (19%)

Query: 66  LNLSHSCLFGSINS-SSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
                + L   ++        L ++   +L            +        + L+L +C 
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNF-GWQHLELVNCK 315

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS--KCNFSGQITSSLR 182
           F       + +  RL F      N       S  +L SLE + +S    +F G  + S  
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 183 NLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGN 242
             T L  LD++ N       +      +L    ++ L  L+  H+ L             
Sbjct: 371 GTTSLKYLDLSFNG------VITMSSNFL---GLEQLEHLDFQHSNLKQMS--------- 412

Query: 243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLL 302
             E         L  +D+S                        S L  L           
Sbjct: 413 --EFSVFLSLRNLIYLDISHTHTRVAFNGI---------FNGLSSLEVL----------- 450

Query: 303 MTTYDYLLTMNIKGRMMAYNKIPDILAG------IILSNKSFDGAIPASISNLKGLQVLN 356
                      + G     N +PDI         + LS    +   P + ++L  LQVLN
Sbjct: 451 ----------KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 357 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVEL-TFLAFFNVSDNYLTGLIP 415
           + +NN           L +L+ LD S N       Q+L    + LAF N++ N       
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (323), Expect = 8e-32
 Identities = 59/371 (15%), Positives = 108/371 (29%), Gaps = 65/371 (17%)

Query: 59  NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLL 118
               + KL    + L    N    +  L  L+ LN+A N   S ++     NL+ +L+ L
Sbjct: 98  GLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHL 154

Query: 119 DLRSCGFWGKVPHSIGNFTRLQF----LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS 174
           DL S          +    ++      L L  N  +    G+   +R L  + +     S
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDS 213

Query: 175 GQITS-SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233
             +    ++ L  L V  +    +     +E           ++ L  L +    L   D
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK-----FDKSALEGLCNLTIEEFRLAYLD 268

Query: 234 QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD 293
            +L      ++        + +    L        +   S+              ++L+ 
Sbjct: 269 YYL------DDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN----------FGWQHLE- 310

Query: 294 VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFD-----GAIPASISN 348
                                    +   K        + S K        G    S  +
Sbjct: 311 -------------------------LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 349 LKGLQVLNLHNNNLQ--GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS 406
           L  L+ L+L  N L   G         T+L+ LDLS N     +    + L  L   +  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 404

Query: 407 DNYLTGLIPQG 417
            + L  +    
Sbjct: 405 HSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (307), Expect = 9e-30
 Identities = 50/342 (14%), Positives = 104/342 (30%), Gaps = 41/342 (11%)

Query: 88  HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFN 147
             + L+L+ N      +          L++LDL  C        +  + + L  L L  N
Sbjct: 29  STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 148 NFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKV 207
                 LG+   L SL+ +   + N +      + +L  L  L++A N          K+
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-----FKL 141

Query: 208 HKWLLDPNMQNLNALNLSHNLLTGFD----QHLVLLPGNNEE-----------PRTGCGF 252
            ++    N+ NL  L+LS N +        + L  +P  N                    
Sbjct: 142 PEYF--SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 253 SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTM 312
            +L  + L +N  +  +          +++       +         +  +  +D     
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF-------RNEGNLEKFDKSALE 252

Query: 313 NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 372
            +    +   +        +     +   I    + L  +   +L +  ++         
Sbjct: 253 GLCNLTIEEFR--------LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSY 302

Query: 373 LTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI 414
               + L+L N KF      +L  L  L F +         +
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (300), Expect = 9e-29
 Identities = 56/397 (14%), Positives = 100/397 (25%), Gaps = 110/397 (27%)

Query: 64  VKLNLSH----------------------SCLFGSINSSSSLYKLVHLEWLNLALNDFNS 101
           + L+LS                       +         + +  L  LE   L L +F +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 102 SEIQPEIINLS----CSLKLLDLRSC---GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL 154
                +    +    C+L + + R      +   +       T +    L         +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--V 297

Query: 155 GSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTME------------ 202
                    + + +  C F    T  L++L  L        +    ++            
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 203 ---IEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIID 259
               +G   +        +L  L+LS N +     +               G  +L  +D
Sbjct: 358 GLSFKGCCSQSDF--GTTSLKYLDLSFNGVITMSSNF-------------LGLEQLEHLD 402

Query: 260 LSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMM 319
              +          FL        +   L YL                            
Sbjct: 403 FQHSNLKQMSEFSVFL--------SLRNLIYL---------------------------- 426

Query: 320 AYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSC-LGNLTNLES 378
                        +S+     A     + L  L+VL +  N+ Q +        L NL  
Sbjct: 427 ------------DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 379 LDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
           LDLS  +     P     L+ L   N+S N    L  
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 54/341 (15%), Positives = 99/341 (29%), Gaps = 75/341 (21%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125
             L+ +       ++ S   L  LE+L+L+ N  +      +    + SLK LDL   G 
Sbjct: 328 KRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 126 WGKVPHSIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
              +  +     +L+ L    +N           +LR+L  + +S  +           L
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244
           + L VL MA NS       +      +    ++NL  L+LS   L               
Sbjct: 445 SSLEVLKMAGNS------FQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAF------- 490

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
                   S L+++++S N F   L +  +           + L+ L             
Sbjct: 491 -----NSLSSLQVLNMSHNNFFS-LDTFPYK--------CLNSLQVLD------------ 524

Query: 305 TYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNL-KGLQVLNLHNNNLQ 363
                                        S      +    + +    L  LNL  N+  
Sbjct: 525 ----------------------------YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 364 GHIPSC--LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
                   L  + +   L +   +     P     +  L+ 
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 8e-15
 Identities = 18/84 (21%), Positives = 28/84 (33%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 392
           LS          S  +   LQVL+L    +Q        +L++L +L L+ N        
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 393 QLVELTFLAFFNVSDNYLTGLIPQ 416
               L+ L      +  L  L   
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 16/83 (19%), Positives = 26/83 (31%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 392
           LS          +  +L  L  L L  N +Q         L++L+ L       +     
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 393 QLVELTFLAFFNVSDNYLTGLIP 415
            +  L  L   NV+ N +     
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKL 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  128 bits (323), Expect = 8e-32
 Identities = 62/385 (16%), Positives = 126/385 (32%), Gaps = 70/385 (18%)

Query: 59  NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLL 118
           ++     LN   +     I        +  L        D               S++ +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT 178
           +L+   F+    ++   F+ LQ L L   + S +L   +  L +L+ + +S   F     
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL 238
            S  N   L  L +  N+         ++    L+ N++NL  L+LSH+ +   D   + 
Sbjct: 319 ISASNFPSLTHLSIKGNT------KRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQ 371

Query: 239 LPG----------NNE----EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVN 284
           L             NE    +        +L ++DL+  R   K     F         N
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF--------QN 423

Query: 285 ASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGII----------LS 334
              L+ L                           ++++ +      +           L 
Sbjct: 424 LHLLKVLN--------------------------LSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 335 N---KSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 391
                  +     S+  L  L++L L   +L         +L  +  +DLS+N+ +    
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 392 QQLVELTFLAFFNVSDNYLTGLIPQ 416
           + L  L  + + N++ N+++ ++P 
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (293), Expect = 7e-28
 Identities = 71/356 (19%), Positives = 124/356 (34%), Gaps = 54/356 (15%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
            V  +NL     F    SS++ +    L+ L+L       SE+   ++ LS +LK L L 
Sbjct: 255 SVESINLQKHYFFNI--SSNTFHCFSGLQELDLTATHL--SELPSGLVGLS-TLKKLVLS 309

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL-GSIGNLRSLEAIYMSKCN--FSGQIT 178
           +  F      S  NF  L  L +  N    +L  G + NL +L  + +S  +   S    
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL 238
             LRNL+ L  L+++ N           +           L  L+L+   L   D     
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLS-------LKTEAFK-ECPQLELLDLAFTRLKVKDAQSPF 421

Query: 239 LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS--ELRYLQDVLS 296
                           L++++LS +        + F    A++ +N             +
Sbjct: 422 -----------QNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 297 PSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLN 356
            S + L                         L  ++LS          + ++LK +  ++
Sbjct: 470 NSLQTLGR-----------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 357 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG 412
           L +N L       L +L  +  L+L++N  S  +P  L  L+     N+  N L  
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  114 bits (287), Expect = 4e-27
 Identities = 45/312 (14%), Positives = 92/312 (29%), Gaps = 29/312 (9%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
            L  S + L+            +      L FL L           +  +   L+ + ++
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLL 229
                    ++L     L  L   Q        I       L   N + L +L L  N +
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTG------ISSIDFIPL--HNQKTLESLYLGSNHI 141

Query: 230 TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV----NA 285
           +                  G    KL+++D  +N     L  +          +    N 
Sbjct: 142 SSIK------------LPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNG 188

Query: 286 SELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNK--SFDGAIP 343
           +++  ++     S       +     + +  + +  + I  +  G            A+ 
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF 403
             +  +  ++ +NL  +       +     + L+ LDL+    S  +P  LV L+ L   
Sbjct: 249 EGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL 306

Query: 404 NVSDNYLTGLIP 415
            +S N    L  
Sbjct: 307 VLSANKFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (284), Expect = 9e-27
 Identities = 55/356 (15%), Positives = 109/356 (30%), Gaps = 45/356 (12%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
               L  S + L      +++  +L++L +L+L         I  +       L  L L 
Sbjct: 34  STECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLT 89

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
           +         ++     L+ L+      S      + N ++LE++Y+   + S       
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241
               +L VLD   N+      I     + +         +LNL+ N + G          
Sbjct: 150 FPTEKLKVLDFQNNA------IHYLSKEDMSSLQQATNLSLNLNGNDIAGI--------- 194

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301
                      +  + ++    +    +          +K      L            +
Sbjct: 195 ----EPGAFDSAVFQSLNFGGTQNLLVIF-------KGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNN 361
               ++ L  M+++   +  +   +I                 +     GLQ L+L   +
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNI--------------SSNTFHCFSGLQELDLTATH 289

Query: 362 LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
           L   +PS L  L+ L+ L LS NKF             L   ++  N     +  G
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (273), Expect = 2e-25
 Identities = 56/375 (14%), Positives = 121/375 (32%), Gaps = 50/375 (13%)

Query: 59  NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLL 118
           +   +  L L+ + L       ++L     L+ L         S I    ++   +L+ L
Sbjct: 79  SQHRLDTLVLTANPLIFMA--ETALSGPKALKHLFFIQTGI--SSIDFIPLHNQKTLESL 134

Query: 119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS-KCNFSGQI 177
            L S               +L+ L    N         + +L+    + ++   N    I
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 178 TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV 237
                +      L+          +    + K L +  +Q+L                + 
Sbjct: 195 EPGAFDSAVFQSLNFGGT------QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 238 LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS--ELRYLQDVL 295
                      G     +  I+L  + F   + S +F C++ ++ ++ +   L  L   L
Sbjct: 249 ----------EGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGL 297

Query: 296 SPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI----------LAGIILSNKSFDGAI-PA 344
                L        L ++        NK  ++          L  + +   +    +   
Sbjct: 298 VGLSTL------KKLVLS-------ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 345 SISNLKGLQVLNLHNNNLQ--GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
            + NL+ L+ L+L +++++        L NL++L+SL+LS N+      +   E   L  
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 403 FNVSDNYLTGLIPQG 417
            +++   L     Q 
Sbjct: 405 LDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 2e-23
 Identities = 65/344 (18%), Positives = 120/344 (34%), Gaps = 70/344 (20%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
                + +L+L+       + S   L  L  L+ L L+ N F  +  Q    N   SL  
Sbjct: 275 HCFSGLQELDLTA-THLSELPSG--LVGLSTLKKLVLSANKF-ENLCQISASNFP-SLTH 329

Query: 118 LDLRSCGFWGKV-PHSIGNFTRLQFLYLGFNN--FSGDLLGSIGNLRSLEAIYMSKCNFS 174
           L ++      ++    + N   L+ L L  ++   S      + NL  L+++ +S     
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 175 GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQ 234
              T + +   +L +LD+A         ++ K  +     N+  L  LNLSH+LL    +
Sbjct: 390 SLKTEAFKECPQLELLDLAFTR------LKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSE 442

Query: 235 HLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDV 294
            L              G   L+ ++L  N F            N+  +     L  L   
Sbjct: 443 QLF------------DGLPALQHLNLQGNHFPKGNI----QKTNS--LQTLGRLEILV-- 482

Query: 295 LSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGII----------LSNKSFDGAIPA 344
                                   +++  +  I               LS+     +   
Sbjct: 483 ------------------------LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 345 SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 388
           ++S+LKG+  LNL +N++   +PS L  L+   +++L  N    
Sbjct: 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (291), Expect = 5e-29
 Identities = 44/344 (12%), Positives = 95/344 (27%), Gaps = 71/344 (20%)

Query: 77  INSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL--LDLRSCGFWGKVPHSIG 134
            N   S ++  +     +      + +   +++  +       L+LRS     + P    
Sbjct: 43  RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAF 101

Query: 135 NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQ 194
             + LQ + +       +L  ++     LE + +++      + +S+ +L  L  L +  
Sbjct: 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 195 NSYGGTM--EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGF 252
                 +   +            + NL +L L    +                P +    
Sbjct: 160 CPELTELPEPL-ASTDASGEHQGLVNLQSLRLEWTGIRSL-------------PASIANL 205

Query: 253 SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTM 312
             L+ + + ++  +  L            I +  +L  L                     
Sbjct: 206 QNLKSLKIRNSPLS-ALGPA---------IHHLPKLEEL--------------------- 234

Query: 313 NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 372
                               L   +     P        L+ L L + +    +P  +  
Sbjct: 235 -------------------DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 373 LTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
           LT LE LDL       R+P  + +L       V  +    L   
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 23/182 (12%)

Query: 64  VKLNLSH-SCL------FGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLK 116
            +L++     L        S ++S     LV+L+ L L         +   I NL  +LK
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQ-NLK 209

Query: 117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQ 176
            L +R+      +  +I +  +L+ L L       +     G    L+ + +  C+    
Sbjct: 210 SLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 177 ITSSLRNLTELVVLDMAQNSYGGT--MEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQ 234
           +   +  LT+L  LD+            I            +     + +  +L    DQ
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIA----------QLPANCIILVPPHLQAQLDQ 318

Query: 235 HL 236
           H 
Sbjct: 319 HR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 41/293 (13%), Positives = 76/293 (25%), Gaps = 85/293 (29%)

Query: 130 PHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVV 189
            H   + +  + LY   +         +   +       ++ + +        N     +
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----WRQANSNNPQI 60

Query: 190 LDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTG 249
                 +              L D       AL L    L  F             P   
Sbjct: 61  ETRTGRAL-------KATADLLEDATQPGRVALELRSVPLPQF-------------PDQA 100

Query: 250 CGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYL 309
              S L+ + +       +LP           +   + L  L                  
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPD---------TMQQFAGLETLT----------------- 133

Query: 310 LTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSC 369
                    +A N +                A+PASI++L  L+ L++        +P  
Sbjct: 134 ---------LARNPLR---------------ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 370 LGN---------LTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
           L +         L NL+SL L        +P  +  L  L    + ++ L+ L
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 29/272 (10%), Positives = 57/272 (20%), Gaps = 84/272 (30%)

Query: 151 GDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW 210
           G       +    E +Y             L         D  +             H  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW------------HSA 49

Query: 211 LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP 270
               N  N      +   L              E+            ++L       + P
Sbjct: 50  WRQANSNNPQIETRTGRALK-------ATADLLED----ATQPGRVALELRSVPLP-QFP 97

Query: 271 SKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAG 330
                     +    S L+++                           +    +      
Sbjct: 98  D---------QAFRLSHLQHM--------------------------TIDAAGLM----- 117

Query: 331 IILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI 390
                      +P ++    GL+ L L  N L+  +P+ + +L  L  L +        +
Sbjct: 118 ----------ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 391 P---------QQLVELTFLAFFNVSDNYLTGL 413
           P          +   L  L    +    +  L
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 43/222 (19%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
           H+  + +  + L   +    ++ +   LE L LA N      +   I +L+  L+ L +R
Sbjct: 105 HLQHMTIDAAGL-MEL--PDTMQQFAGLETLTLARNPL--RALPASIASLN-RLRELSIR 158

Query: 122 SCGFWGKVPHSIGNF---------TRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN 172
           +C    ++P  + +            LQ L L +      L  SI NL++L+++ +    
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217

Query: 173 FSGQITSSLRNLTELVVLDMAQNSYGGTM--EIEGKVHKWLLDPNMQNLNALNLSH-NLL 229
            S  +  ++ +L +L  LD+   +                        L  L L   + L
Sbjct: 218 LS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG----------GRAPLKRLILKDCSNL 266

Query: 230 TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS 271
                           P      ++L  +DL       +LPS
Sbjct: 267 LTL-------------PLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 48/319 (15%), Positives = 89/319 (27%), Gaps = 94/319 (29%)

Query: 64  VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSC 123
           V L L    L          ++L HL+ + +        E+   +   +  L+ L L   
Sbjct: 84  VALELRSVPL-PQF--PDQAFRLSHLQHMTIDAAGL--MELPDTMQQFA-GLETLTLARN 137

Query: 124 GFWGKVPHSIGNFTRLQFLYLGFNN---------FSGDLLGSIGNLRSLEAIYMSKCNFS 174
                +P SI +  RL+ L +              S D  G    L +L+++ +      
Sbjct: 138 PL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 175 GQITSSLRNLTELVVLDMAQNSYGG-TMEIEGKVHKWLLDPNMQNLNALNLSH-NLLTGF 232
             + +S+ NL  L  L +  +        I           ++  L  L+L     L  +
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLSALGPAIH----------HLPKLEELDLRGCTALRNY 245

Query: 233 DQHLVLLPGNNEEPRTGCGFSKLRIIDLSD-NRFTGKLPSKSFLCWNAMKIVNASELRYL 291
                        P    G + L+ + L D +     LP           I   ++L  L
Sbjct: 246 -------------PPIFGGRAPLKRLILKDCSNLL-TLPL---------DIHRLTQLEKL 282

Query: 292 QDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG 351
                                                    L        +P+ I+ L  
Sbjct: 283 ----------------------------------------DLRGCVNLSRLPSLIAQLPA 302

Query: 352 LQVLNLHNNNLQGHIPSCL 370
             ++ +   +LQ  +    
Sbjct: 303 NCIILVP-PHLQAQLDQHR 320

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (280), Expect = 2e-26
 Identities = 63/368 (17%), Positives = 122/368 (33%), Gaps = 54/368 (14%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDF----NSSEIQPEIINLSCSLKLLDL 120
           +L L  +    +I   + L  L  L    L L +F    N    +P I+   C + + + 
Sbjct: 208 ELTLRGNFNSSNI-MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 121 RSCG--FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT 178
           R      +            +  + L   +     L  +      +++ + +C      T
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL 238
             L  L     L +  N    + +             + +L+ L+LS N L+        
Sbjct: 325 LDLPFLK---SLTLTMNKGSISFKKVA----------LPSLSYLDLSRNALSFSG----- 366

Query: 239 LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
                    +  G + LR +DLS N     + S +F+    ++ ++      L+ V   S
Sbjct: 367 -----CCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHST-LKRVTEFS 418

Query: 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGII----------LSNKSFDGAIPASI-S 347
             L +     LL ++I     +Y        GI           ++  SF     +++ +
Sbjct: 419 AFLSLEK---LLYLDI-----SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 348 NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD 407
           N   L  L+L    L+         L  L+ L++S+N           +L  L+  + S 
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 408 NYLTGLIP 415
           N +     
Sbjct: 531 NRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 1e-24
 Identities = 63/361 (17%), Positives = 108/361 (29%), Gaps = 81/361 (22%)

Query: 50  SWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII 109
             D +       +V  ++L+      SI     + K    + L++               
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGV----SIKYLEDVPKHFKWQSLSIIRCQLKQFPTL---- 325

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFS--GDLLGSIGNLRSLEAIY 167
           +L   LK L L      G +         L +L L  N  S  G    S     SL  + 
Sbjct: 326 DLP-FLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN 227
           +S       ++++   L EL  LD   ++      ++          +++ L  L++S+ 
Sbjct: 383 LSFNGAII-MSANFMGLEELQHLDFQHST------LKRVTEFSAFL-SLEKLLYLDISYT 434

Query: 228 LLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE 287
                   +              G + L  + ++ N F     S  F         N + 
Sbjct: 435 NTKIDFDGIF------------LGLTSLNTLKMAGNSFKDNTLSNVF--------ANTTN 474

Query: 288 LRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS 347
           L +L                                         LS    +        
Sbjct: 475 LTFL----------------------------------------DLSKCQLEQISWGVFD 494

Query: 348 NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD 407
            L  LQ+LN+ +NNL     S    L +L +LD S N+              LAFFN+++
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 408 N 408
           N
Sbjct: 555 N 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (261), Expect = 8e-24
 Identities = 51/357 (14%), Positives = 106/357 (29%), Gaps = 47/357 (13%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
               ++LS       +  S S      L+WL+L+  +     I+ +  +    L  L L 
Sbjct: 33  STKNIDLSF-NPLKIL-KSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILT 88

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QITSS 180
                   P S    T L+ L       +      IG L +L+ + ++       ++ + 
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWL--LDPNMQNLNALNLSHNLLTGFDQHLVL 238
             NLT LV +D++ N       I+      L  L  N Q   +L++S N +         
Sbjct: 149 FSNLTNLVHVDLSYNY------IQTITVNDLQFLRENPQVNLSLDMSLNPIDFI------ 196

Query: 239 LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
                 + +   G   L  + L  N  +  +          + +       +        
Sbjct: 197 ------QDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD--ERNL 247

Query: 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLH 358
                +  + L  + I    + Y                           L  +  ++L 
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSD--------------DIVKFHCLANVSAMSLA 293

Query: 359 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
             +++ ++   +      +SL +   +        L  L  L    ++ N  +    
Sbjct: 294 GVSIK-YLED-VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFK 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 1e-22
 Identities = 56/396 (14%), Positives = 113/396 (28%), Gaps = 80/396 (20%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS----------------------- 101
           KLN++H     S    +    L +L  ++L+ N   +                       
Sbjct: 132 KLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 102 ---SEIQPEIINLSCSLKLLDLRSCGFWGKVP-HSIGNFTRLQFLYLGFNNFSG------ 151
                IQ +       L  L LR       +    + N   L    L    F        
Sbjct: 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 152 ---DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVH 208
               ++  + ++   E   ++  N           L  +  + +A  S     ++     
Sbjct: 250 FEPSIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV----- 303

Query: 209 KWLLDPNMQNLNALNLSHNLLTGFD-------QHLVLLPGNNEEPRTGCGFSKLRIIDLS 261
                P      +L++    L  F        + L L                L  +DLS
Sbjct: 304 -----PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLS 358

Query: 262 DNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAY 321
            N  +      S+        +  + LR+L   LS     ++ + +++    ++     +
Sbjct: 359 RNALS-FSGCCSY------SDLGTNSLRHLD--LS-FNGAIIMSANFMGLEELQHLDFQH 408

Query: 322 NKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL 381
           + +  +       +             L+ L  L++   N +         LT+L +L +
Sbjct: 409 STLKRVTEFSAFLS-------------LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 382 SNNKFSGRIPQQ-LVELTFLAFFNVSDNYLTGLIPQ 416
           + N F            T L F ++S   L  +   
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 52/322 (16%), Positives = 91/322 (28%), Gaps = 68/322 (21%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
           ++  S K +DL          +S  NF+ LQ+L L           +   L  L  + ++
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLL 229
                     S   LT L  L   +        +       +    +  L  LN++HN +
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETK------LASLESFPI--GQLITLKKLNVAHNFI 140

Query: 230 TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR 289
                         + P      + L  +DLS N     +                 E  
Sbjct: 141 HSC-----------KLPAYFSNLTNLVHVDLSYNYIQT-ITVNDL--------QFLRENP 180

Query: 290 YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKI----PDILAGIIL------SNKSFD 339
            +   L                       M+ N I         GI L       N +  
Sbjct: 181 QVNLSLD----------------------MSLNPIDFIQDQAFQGIKLHELTLRGNFNSS 218

Query: 340 GAIPASISNLKGLQVLNL------HNNNLQGHIPSCLGNLTNL--ESLDLSNNKFSGRIP 391
             +   + NL GL V  L         NL+   PS +  L ++  +   L+         
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 392 QQLVELTFLAFFNVSDNYLTGL 413
            +   L  ++  +++   +  L
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYL 300

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.3 bits (209), Expect = 2e-17
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 25/216 (11%)

Query: 52  DGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINL 111
              + +  T  +  L+LS +     I  S++   L  L+ L+   +           ++L
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL-GSIGNLRSLEAIYMSK 170
              L  LD+                T L  L +  N+F  + L     N  +L  + +SK
Sbjct: 424 E-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 171 CNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLT 230
           C            L  L +L+M+ N+      +   +        + +L+ L+ S N + 
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNN------LLF-LDSSHY-NQLYSLSTLDCSFNRIE 534

Query: 231 GFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT 266
                                   L   +L++N   
Sbjct: 535 TSK------------GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 36/196 (18%), Positives = 54/196 (27%), Gaps = 64/196 (32%)

Query: 222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMK 281
                  L+     +                S  + IDLS N     L S SF       
Sbjct: 16  YQCMDQKLSKVPDDI---------------PSSTKNIDLSFNPLKI-LKSYSFS------ 53

Query: 282 IVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGA 341
             N SEL++L                           ++  +I  I              
Sbjct: 54  --NFSELQWLD--------------------------LSRCEIETI-------------- 71

Query: 342 IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLA 401
              +   L  L  L L  N +Q   P     LT+LE+L     K +      + +L  L 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 402 FFNVSDNYLTGLIPQG 417
             NV+ N++       
Sbjct: 132 KLNVAHNFIHSCKLPA 147

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (278), Expect = 7e-26
 Identities = 71/368 (19%), Positives = 124/368 (33%), Gaps = 31/368 (8%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
              +L LS      ++ ++SS   L  L+ L L         I  E      +L++LDL 
Sbjct: 25  TTERLLLSF-NYIRTV-TASSFPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLG 81

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL--GSIGNLRSLEAIYMSKCNFSG-QIT 178
           S   +   P +      L  L L F   S  +L  G   NL++L  + +SK       + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL 238
            S   L  L  +D + N       I       L     + L+  +L+ N L         
Sbjct: 142 PSFGKLNSLKSIDFSSNQ------IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 239 LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
              N            L I+D+S N +T  +        +  +  +     ++       
Sbjct: 196 KCMNPFRNMV------LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 299 GKLLM---TTYDYLLTMNIKGRMMAYNKIPDILAGII----------LSNKSFDGAIPAS 345
             +      T+  L   +++   +++  +  + + +           L+    +     +
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405
              L  LQVLNL  N L     S    L  +  +DL  N  +    Q    L  L   ++
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 406 SDNYLTGL 413
            DN LT +
Sbjct: 370 RDNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.8 bits (241), Expect = 2e-21
 Identities = 63/374 (16%), Positives = 114/374 (30%), Gaps = 53/374 (14%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
           H++        +     ++ +      +  L+L+        +   +      LK+L+L 
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV--FSLNSRVFETLKDLKVLNLA 298

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
                     +      LQ L L +N        +   L  +  I + K + +     + 
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241
           + L +L  LD+  N+      I      +L    +  L  +NL+ NL+   +  L     
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE---- 414

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301
           N +          L+I+ L+ NRF+           N         L  L          
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPSEN-------PSLEQLF--------- 457

Query: 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNN 361
                            +  N +       +  +             L  LQVL L++N 
Sbjct: 458 -----------------LGENMLQLAWETELCWD---------VFEGLSHLQVLYLNHNY 491

Query: 362 LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFA 421
           L    P    +LT L  L L++N+ +      L     L   ++S N L    P    F 
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD--VFV 547

Query: 422 TFDNTSFDGNSGLC 435
           +        N  +C
Sbjct: 548 SLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 343 PASISNLKGLQVLNLHNNNLQGHI-PSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLA 401
            +S   L+ LQ+L L +      I      NL NL  LDL ++K     P     L  L 
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100

Query: 402 FFNVSDNYLTGLIPQGKQFA 421
              +    L+  + +   F 
Sbjct: 101 ELRLYFCGLSDAVLKDGYFR 120

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  102 bits (257), Expect = 3e-24
 Identities = 69/365 (18%), Positives = 133/365 (36%), Gaps = 78/365 (21%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
            + KL ++       + S   +  L +LE+LNL  N          + NL   L  L + 
Sbjct: 45  SITKLVVAGE----KVASIQGIEYLTNLEYLNLNGNQITDI---SPLSNLV-KLTNLYIG 96

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
           +         ++ N T L+ LYL  +N S   +  + NL  + ++ +   +    + S L
Sbjct: 97  TNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDL-SPL 151

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD-------- 233
            N+T L  L + ++       I           N+ +L +L+L++N +            
Sbjct: 152 SNMTGLNYLTVTESKVKDVTPIA----------NLTDLYSLSLNYNQIEDISPLASLTSL 201

Query: 234 QHLVLLPGNN--EEPRTGCGFSKLRIIDLSDNRFT-----GKLPSKSFLCWNAMKIVNAS 286
            +       N   +       ++L  + + +N+ T       L   ++L     +I + +
Sbjct: 202 HYFTA--YVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN 259

Query: 287 ELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASI 346
            ++ L                      +K   +  N+I DI                + +
Sbjct: 260 AVKDLT--------------------KLKMLNVGSNQISDI----------------SVL 283

Query: 347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS 406
           +NL  L  L L+NN L       +G LTNL +L LS N  +   P  L  L+ +   + +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341

Query: 407 DNYLT 411
           +  + 
Sbjct: 342 NQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 2e-20
 Identities = 65/354 (18%), Positives = 120/354 (33%), Gaps = 94/354 (26%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
             ++  L  +    S+    +  +L  +  L +A     S      I  L+ +L+ L+L 
Sbjct: 23  EGIRAVLQKA----SVTDVVTQEELESITKLVVAGEKVAS---IQGIEYLT-NLEYLNLN 74

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
                   P  + N  +L  LY+G N  +   + ++ NL +L  +Y+++ N S    S L
Sbjct: 75  GNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD--ISPL 128

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241
            NLT++  L++  N     +             NM  LN L ++ + +            
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSPLS---------NMTGLNYLTVTESKVKDVT-------- 171

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301
                      + L  + L+ N+     P           + + + L Y           
Sbjct: 172 ------PIANLTDLYSLSLNYNQIEDISP-----------LASLTSLHYFT--------- 205

Query: 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNN 361
                               N+I DI                  ++N+  L  L + NN 
Sbjct: 206 -----------------AYVNQITDI----------------TPVANMTRLNSLKIGNNK 232

Query: 362 LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
           +    P  L NL+ L  L++  N+ S      + +LT L   NV  N ++ +  
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 8e-12
 Identities = 44/277 (15%), Positives = 81/277 (29%), Gaps = 84/277 (30%)

Query: 139 LQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198
              L       +   +    +L       + K + +     +   L  +  L +A     
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 199 GTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRII 258
               IE           + NL  LNL+ N +T                       KL  +
Sbjct: 58  SIQGIE----------YLTNLEYLNLNGNQITDIS--------------PLSNLVKLTNL 93

Query: 259 DLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRM 318
            +  N+ T  + +          + N + LR L                           
Sbjct: 94  YIGTNKIT-DISA----------LQNLTNLRELY-------------------------- 116

Query: 319 MAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLES 378
           +  + I DI                + ++NL  +  LNL  N+    +   L N+T L  
Sbjct: 117 LNEDNISDI----------------SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159

Query: 379 LDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
           L ++ +K     P  +  LT L   +++ N +  + P
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 70/372 (18%), Positives = 116/372 (31%), Gaps = 85/372 (22%)

Query: 61  GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDL 120
           G +    ++       IN   +   L       L   +   +       +L   +  L  
Sbjct: 1   GPLGSATITQDT---PINQIFTDTALAEKMKTVLGKTNVTDT---VSQTDLD-QVTTLQA 53

Query: 121 RSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS 180
              G   K    +     L  +    N  +   +  + NL  L  I M+    +    + 
Sbjct: 54  DRLGI--KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITP 107

Query: 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD------- 233
           L NLT L  L +  N       ++          N+ NLN L LS N ++          
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLK----------NLTNLNRLELSSNTISDISALSGLTS 157

Query: 234 -QHLVLLPGNN-EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL 291
            Q L    GN   + +     + L  +D+S N+ +  +            +   + L  L
Sbjct: 158 LQQLSF--GNQVTDLKPLANLTTLERLDISSNKVSD-ISV----------LAKLTNLESL 204

Query: 292 QDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI--------LAGIILSNKSFDGAIP 343
                                         N+I DI        L  + L+         
Sbjct: 205 I--------------------------ATNNQISDITPLGILTNLDELSLNGNQLKD--I 236

Query: 344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF 403
            ++++L  L  L+L NN +    P  L  LT L  L L  N+ S   P  L  LT L   
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 404 NVSDNYLTGLIP 415
            +++N L  + P
Sbjct: 293 ELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.4 bits (238), Expect = 3e-21
 Identities = 78/359 (21%), Positives = 127/359 (35%), Gaps = 90/359 (25%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            + ++++     I   + L  L +L  L L  N          + NL+ +L  L+L S  
Sbjct: 94  DILMNNN----QIADITPLANLTNLTGLTLFNNQITDI---DPLKNLT-NLNRLELSSNT 145

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
                  ++   T LQ L  G N  +   L  + NL +LE + +S    S    S L  L
Sbjct: 146 I--SDISALSGLTSLQQLSFG-NQVTD--LKPLANLTTLERLDISSNKVSD--ISVLAKL 198

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244
           T L  L    N       +            + NL+ L+L+ N L               
Sbjct: 199 TNLESLIATNNQISDITPLG----------ILTNLDELSLNGNQLKDIG----------- 237

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
              T    + L  +DL++N+ +   P           +   ++L  L+            
Sbjct: 238 ---TLASLTNLTDLDLANNQISNLAP-----------LSGLTKLTELK------------ 271

Query: 305 TYDYLLTMNIKGRMMAYNKIPDI--------LAGIILSNKSFDGAIPASISNLKGLQVLN 356
                         +  N+I +I        L  + L+    +   P  ISNLK L  L 
Sbjct: 272 --------------LGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315

Query: 357 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
           L+ NN+    P  + +LT L+ L   NNK S      L  LT + + +   N ++ L P
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 48/357 (13%), Positives = 102/357 (28%), Gaps = 88/357 (24%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
           +L+  +      +     L  L  LE L++     N       +  L+ +L+ L   +  
Sbjct: 160 QLSFGNQ-----VTDLKPLANLTTLERLDI---SSNKVSDISVLAKLT-NLESLIATNNQ 210

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
                   +G  T L  L L  N      +G++ +L +L  + ++    S    + L  L
Sbjct: 211 I--SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGL 264

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244
           T+L  L +  N       +            +  L  L L+ N L               
Sbjct: 265 TKLTELKLGANQISNISPLA----------GLTALTNLELNENQLEDIS----------- 303

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
                     L  + L  N  +   P           + + ++L+ L             
Sbjct: 304 ---PISNLKNLTYLTLYFNNISDISP-----------VSSLTKLQRLF------------ 337

Query: 305 TYDYLLTMNIKGRMMAYNKIPDI--------LAGIILSNKSFDGAIPASISNLKGLQVLN 356
                            NK+ D+        +  +   +       P  ++NL  +  L 
Sbjct: 338 --------------FYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381

Query: 357 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
           L++        +   N++   ++           P  + +       +++ N  +  
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.6 bits (197), Expect = 4e-16
 Identities = 57/346 (16%), Positives = 103/346 (29%), Gaps = 78/346 (22%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
           +L++S +     ++  S L KL +LE L    N  +       +  L+ +L  L L    
Sbjct: 181 RLDISSN----KVSDISVLAKLTNLESLIATNNQISDI---TPLGILT-NLDELSLNGNQ 232

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
              K   ++ + T L  L L  N  S   L  +  L  L  + +     S    S L  L
Sbjct: 233 L--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGL 286

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD-----QHLVLL 239
           T L  L++ +N       I           N++NL  L L  N ++          L  L
Sbjct: 287 TALTNLELNENQLEDISPIS----------NLKNLTYLTLYFNNISDISPVSSLTKLQRL 336

Query: 240 --PGNN-EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLS 296
               N   +  +    + +  +    N+ +   P           + N + +  L     
Sbjct: 337 FFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-----------LANLTRITQLG---- 381

Query: 297 PSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGI--------ILSNKSFDGAIPASISN 348
                                 +      +              + N +     PA+IS+
Sbjct: 382 ----------------------LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISD 419

Query: 349 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 394
                  ++  N             +   ++      FSG + Q L
Sbjct: 420 GGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 392
           L   +    +    ++L  +  L      ++      +  L NL  ++ SNN+ +   P 
Sbjct: 31  LGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP- 85

Query: 393 QLVELTFLAFFNVSDNYLTGLIPQGK 418
            L  LT L    +++N +  + P   
Sbjct: 86  -LKNLTKLVDILMNNNQIADITPLAN 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405
           + NL  L  + ++NN +    P  L NLTNL  L L NN+ +   P  L  LT L    +
Sbjct: 86  LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141

Query: 406 SDNYLTGLIPQGK 418
           S N ++ +     
Sbjct: 142 SSNTISDISALSG 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 66/365 (18%), Positives = 122/365 (33%), Gaps = 36/365 (9%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125
           L L  S +  +     + Y L  LE L+L+ N    S +         SLK L+L    +
Sbjct: 55  LILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 126 WG-KVPHSIGNFTRLQFLYLGFNNFSGDLL-GSIGNLRSLEAIYMSKCNFSGQITSSLRN 183
               V     N T LQ L +G      ++       L SL  + +   +     + SL++
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 184 LTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNN 243
           + ++  L +  +     +EI            + ++  L L    L  F    + +   +
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFAD--------ILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 244 EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLM 303
              +    F    + D S N     L     L          + L       +PS   ++
Sbjct: 223 SPMK-KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF----NPSESDVV 277

Query: 304 TTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ 363
           +    + T+ I+   +    +   L+                 S L+ ++ + + N+ + 
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLST--------------VYSLLEKVKRITVENSKVF 323

Query: 364 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE---LTFLAFFNVSDNYLTGLIPQGKQF 420
               S   +L +LE LDLS N       +          L    +S N+L  +   G+  
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 421 ATFDN 425
            T  N
Sbjct: 384 LTLKN 388

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 54/375 (14%), Positives = 120/375 (32%), Gaps = 55/375 (14%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
           ++  L + +   F  I        L  L  L +          Q + +     +  L L 
Sbjct: 124 NLQTLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLH 180

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNN--------FSGDLLGSIGNLRSLEAIYMSKCNF 173
                  +       + +++L L   N           D + S     +     ++  +F
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 174 SGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233
           + ++   LR + EL  ++    +  G  +        +    +  +  + +    +  F 
Sbjct: 241 N-ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV--SELGKVETVTIRRLHIPQFY 297

Query: 234 QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD 293
               L               K++ I + +++    +P             +   L +L  
Sbjct: 298 LFYDL-------STVYSLLEKVKRITVENSKVF-LVPCSFS--------QHLKSLEFL-- 339

Query: 294 VLSP---SGKLLMTTYDYLLTMNIKGRMMAYNKIPDI------------LAGIILSNKSF 338
            LS      + L  +       +++  +++ N +  +            L  + +S  +F
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 339 DGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT 398
              +P S    + ++ LNL +  ++  + +C+     LE LD+SNN         L  L 
Sbjct: 400 -HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ 454

Query: 399 FLAFFNVSDNYLTGL 413
            L    +S N L  L
Sbjct: 455 EL---YISRNKLKTL 466

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 42/338 (12%), Positives = 103/338 (30%), Gaps = 78/338 (23%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALN-----DFNSSEIQPEIINLSC-SLKLLD 119
             L+       +     + +L  +E+ +  LN     + + S++  E+  +   +++ L 
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 120 LRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI-- 177
           +     +  +        +++ + +  +           +L+SLE + +S+     +   
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 178 -TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHL 236
            ++       L  L ++QN    +M+  G++        ++NL +L++S N         
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLR-SMQKTGEILL-----TLKNLTSLDISRNTFHPMPDSC 406

Query: 237 VLLP--------GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASEL 288
                                C    L ++D+S+N                        L
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSL------------FLPRL 453

Query: 289 RYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISN 348
           + L                           ++ NK+  +    +                
Sbjct: 454 QELY--------------------------ISRNKLKTLPDASLFPV------------- 474

Query: 349 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386
              L V+ +  N L+         LT+L+ + L  N +
Sbjct: 475 ---LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 37/304 (12%), Positives = 86/304 (28%), Gaps = 71/304 (23%)

Query: 111 LSC-SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
           LSC +  + D RS  F   +P  +     ++ L L FN  +    G +    +L+ + + 
Sbjct: 2   LSCDASGVCDGRSRSF-TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLL 229
               +     +  +L  L  LD++ N           +        + +L  LNL  N  
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHL-------SSLSSSWFG-PLSSLKYLNLMGNPY 110

Query: 230 TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR 289
                  +               + L+ + + +     ++    F           + L 
Sbjct: 111 QTLGVTSLFP-----------NLTNLQTLRIGNVETFSEIRRIDFA--------GLTSLN 151

Query: 290 YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNL 349
            L+                          +    + +  +               S+ ++
Sbjct: 152 ELE--------------------------IKALSLRNYQSQ--------------SLKSI 171

Query: 350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNY 409
           + +  L LH +     +      L+++  L+L +   +      L      +        
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 410 LTGL 413
            + L
Sbjct: 232 GSVL 235

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 35/215 (16%)

Query: 66  LNLSHSCL-FGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
           L+LS + +    + +S+       L+ L L+ N   S +   EI+    +L  LD+    
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSI--GNLRSLEAIYMSKCNFSGQITSSLR 182
           F   +P S     +++FL L            +     ++LE + +S       + S   
Sbjct: 399 F-HPMPDSCQWPEKMRFLNLSSTGIR-----VVKTCIPQTLEVLDVSNN----NLDSFSL 448

Query: 183 NLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGN 242
            L  L  L +++N          K+           L  + +S N L      +      
Sbjct: 449 FLPRLQELYISRN----------KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFD---- 494

Query: 243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCW 277
                     + L+ I L  N +    P   +L  
Sbjct: 495 --------RLTSLQKIWLHTNPWDCSCPRIDYLSR 521

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 34/94 (36%)

Query: 324 IPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 383
           +   +  + LS           +     LQVL L ++ +         +L +LE LDLS+
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 384 NKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
           N  S         L+ L + N+  N    L    
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 57/374 (15%), Positives = 105/374 (28%), Gaps = 101/374 (27%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
              ++ S L      +S      +++ L+L+ N    S+I                    
Sbjct: 14  IEKVTDSSL--KQALASLRQSAWNVKELDLSGNPL--SQISAA----------------- 52

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
                   +  FT+L+ L L  N         + +L +L  + ++           L   
Sbjct: 53  -------DLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVG 98

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244
             +  L  A N+      I       +     Q    + L++N +T              
Sbjct: 99  PSIETLHAANNN------ISR-----VSCSRGQGKKNIYLANNKITML------------ 135

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
                   S+++ +DL  N     +              ++  L +L             
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEID-TVNFAEL-------AASSDTLEHL------------- 174

Query: 305 TYDYLLTMNIKGRMMAYNKIPDILAGIILSN-KSFD------GAIPASISNLKGLQVLNL 357
               L           YN I D+   ++ +  K+ D        +     +  G+  ++L
Sbjct: 175 ---NL----------QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 358 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
            NN L   I   L    NLE  DL  N F     +            V+   +  L  Q 
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQN 279

Query: 418 KQFATFDNTSFDGN 431
           ++  T       G 
Sbjct: 280 EEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 42/285 (14%), Positives = 96/285 (33%), Gaps = 65/285 (22%)

Query: 133 IGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192
             N  R +   +  ++    L     +  +++ + +S    S    + L   T+L +L++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL----LPGNNEEPRT 248
           + N    T+++E          ++  L  L+L++N +        +       NN    +
Sbjct: 66  SSNVLYETLDLE----------SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115

Query: 249 GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDY 308
                  + I L++N+ T  L                S ++YL                 
Sbjct: 116 CSRGQGKKNIYLANNKIT-MLRDLDEG--------CRSRVQYLD---------------- 150

Query: 309 LLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS 368
                     +  N+I  +                   ++   L+ LNL  N +   +  
Sbjct: 151 ----------LKLNEIDTV-------------NFAELAASSDTLEHLNLQYNFIY-DVKG 186

Query: 369 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
            +     L++LDLS+NK +  +  +      + + ++ +N L  +
Sbjct: 187 QV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 56/348 (16%), Positives = 117/348 (33%), Gaps = 87/348 (25%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
           ++  +V +L+LS + L  S  S++ L     LE LNL+ N    +    ++ +LS +L+ 
Sbjct: 31  QSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYET---LDLESLS-TLRT 84

Query: 118 LDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI 177
           LDL +          +     ++ L+   NN S     S    +  + IY++    +   
Sbjct: 85  LDLNNNYV-----QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLR 136

Query: 178 TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV 237
                  + +  LD+  N      EI+  V+   L  +   L  LNL +N +      +V
Sbjct: 137 DLDEGCRSRVQYLDLKLN------EID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 238 LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSP 297
                          +KL+ +DLS N+    +           +  +A+ + ++      
Sbjct: 190 F--------------AKLKTLDLSSNKLA-FMGP---------EFQSAAGVTWIS----- 220

Query: 298 SGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNL 357
                                +  NK+                 I  ++   + L+  +L
Sbjct: 221 ---------------------LRNNKL---------------VLIEKALRFSQNLEHFDL 244

Query: 358 HNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN 404
             N    G +         ++++     K      ++   +  L  + 
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 19/75 (25%), Positives = 32/75 (42%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
           AI     N    ++  + +++L+  + S   +  N++ LDLS N  S      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 401 AFFNVSDNYLTGLIP 415
              N+S N L   + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 5e-20
 Identities = 57/391 (14%), Positives = 107/391 (27%), Gaps = 103/391 (26%)

Query: 59  NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLL 118
           N        ++ S L      +S      +++ L+L+ N    S+I              
Sbjct: 8   NGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPL--SQISAA----------- 52

Query: 119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT 178
                         +  FT+L+ L L  N         + +L +L  + ++         
Sbjct: 53  -------------DLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV----- 92

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL 238
             L     +  L  A N+      I       +     Q    + L++N +T        
Sbjct: 93  QELLVGPSIETLHAANNN------ISR-----VSCSRGQGKKNIYLANNKITML------ 135

Query: 239 LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
                         S+++ +DL  N     +              ++  L +L       
Sbjct: 136 ------RDLDEGCRSRVQYLDLKLNEID-TVNFAEL-------AASSDTLEHLN------ 175

Query: 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSN-KSFD------GAIPASISNLKG 351
                               + YN I D+   ++ +  K+ D        +     +  G
Sbjct: 176 --------------------LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
           +  ++L NN L   I   L    NLE  DL  N F     +            V+   + 
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK 273

Query: 412 GLIPQGKQFATFDNTSFDGNSGLCGKPLSKG 442
            L   G+        +       C + L   
Sbjct: 274 KL--TGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 45/356 (12%), Positives = 93/356 (26%), Gaps = 52/356 (14%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            L+L++       N    L     +E L+ A N+   S +           K + L +  
Sbjct: 84  TLDLNN-------NYVQELLVGPSIETLHAANNNI--SRVSCSRGQ---GKKNIYLANNK 131

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITS--SL 181
                    G  +R+Q+L L  N     +      +  +LE + +        I      
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----FIYDVKGQ 187

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241
               +L  LD++ N       +  +        +   +  ++L +N L   ++ L     
Sbjct: 188 VVFAKLKTLDLSSNK---LAFMGPEFQ------SAAGVTWISLRNNKLVLIEKALRFSQ- 237

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301
                        L   DL  N F        F     ++ V    ++ L         +
Sbjct: 238 ------------NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDG----AIPASISNLKGLQVLNL 357
              T  +      +     +      L     +  S  G     +     N    + ++ 
Sbjct: 286 P--TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 358 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
                +  I           +L+            + V     A   +       +
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKAL-----DEQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 6e-17
 Identities = 42/285 (14%), Positives = 96/285 (33%), Gaps = 65/285 (22%)

Query: 133 IGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192
             N  R +   +  ++    L     +  +++ + +S    S    + L   T+L +L++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL----LPGNNEEPRT 248
           + N    T+++E          ++  L  L+L++N +        +       NN    +
Sbjct: 66  SSNVLYETLDLE----------SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115

Query: 249 GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDY 308
                  + I L++N+ T  L                S ++YL                 
Sbjct: 116 CSRGQGKKNIYLANNKIT-MLRDLDE--------GCRSRVQYLD---------------- 150

Query: 309 LLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS 368
                     +  N+I  +                   ++   L+ LNL  N +   +  
Sbjct: 151 ----------LKLNEIDTV-------------NFAELAASSDTLEHLNLQYNFIY-DVKG 186

Query: 369 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
            +     L++LDLS+NK +  +  +      + + ++ +N L  +
Sbjct: 187 QV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 19/75 (25%), Positives = 32/75 (42%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
           AI     N    ++  + +++L+  + S   +  N++ LDLS N  S      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 401 AFFNVSDNYLTGLIP 415
              N+S N L   + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 55/353 (15%), Positives = 111/353 (31%), Gaps = 71/353 (20%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125
            ++        +        L + + +    +     ++   +++    ++LL+L     
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 81

Query: 126 WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLT 185
                ++      +Q LY+GFN           N+  L  + + + + S        N  
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141

Query: 186 ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEE 245
           +L  L M+ N+      +E ++          +L  L LS N LT  D  L         
Sbjct: 142 KLTTLSMSNNN------LE-RIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSL--------- 184

Query: 246 PRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCW-----NAMKIVNASELRYLQDVLSPSGK 300
                    L   ++S N  +  L     +       N++ +V       L  +L     
Sbjct: 185 ------IPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVRGPVNVELT-ILK---- 232

Query: 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNN 360
                             + +N + D                 A + N  GL  ++L  N
Sbjct: 233 ------------------LQHNNLTDT----------------AWLLNYPGLVEVDLSYN 258

Query: 361 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
            L+  +      +  LE L +SNN+    +      +  L   ++S N+L  +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 58/353 (16%), Positives = 108/353 (30%), Gaps = 72/353 (20%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            +   +      +  ++ L     +E LNL        EI       + +++ L +    
Sbjct: 49  IVTFKN-STMRKL-PAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNA 104

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
                PH   N   L  L L  N+ S    G   N   L  + MS  N       + +  
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL----LP 240
           T L  L ++ N       +       +    + +L   N+S+NLL+     + +      
Sbjct: 165 TSLQNLQLSSN------RLTH-----VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213

Query: 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300
            N+     G    +L I+ L  N  T               ++N   L  +         
Sbjct: 214 HNSINVVRGPVNVELTILKLQHNNLT-DTAW----------LLNYPGLVEVD-------- 254

Query: 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNN 360
                             ++YN++  I+                    ++ L+ L + NN
Sbjct: 255 ------------------LSYNELEKIMYH--------------PFVKMQRLERLYISNN 282

Query: 361 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
            L   +      +  L+ LDLS+N     + +   +   L    +  N +  L
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 66/374 (17%), Positives = 102/374 (27%), Gaps = 92/374 (24%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
           KL +        +        +  L  L L  ND   S +   I + +  L  L + +  
Sbjct: 97  KLYMGF-NAIRYL-PPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNN 152

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
                  +    T LQ L L  N  +   L  I +L           N S  + S+L   
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA--------NVSYNLLSTLAIP 204

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244
             +  LD + NS      I       +  P    L  L L HN LT              
Sbjct: 205 IAVEELDASHNS------INV-----VRGPVNVELTILKLQHNNLT-------------- 239

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
           +      +  L  +DLS N    K+    F        V    L  L             
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELE-KIMYHPF--------VKMQRLERLY------------ 278

Query: 305 TYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQG 364
                         ++ N++                 +      +  L+VL+L +N+L  
Sbjct: 279 --------------ISNNRLVA---------------LNLYGQPIPTLKVLDLSHNHLL- 308

Query: 365 HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFD 424
           H+         LE+L L +N     +         L    +S N           F    
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDC-NSLRALFRNVA 364

Query: 425 NTSFDGNSGLCGKP 438
             + D     C   
Sbjct: 365 RPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 35/285 (12%), Positives = 71/285 (24%), Gaps = 77/285 (27%)

Query: 129 VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV 188
           +  ++        +++               L + + +            + L +  ++ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 189 VLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT 248
           +L++         EI+              +  L +  N +                P  
Sbjct: 73  LLNLNDLQI---EEIDTYAFA-----YAHTIQKLYMGFNAIRYL------------PPHV 112

Query: 249 GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDY 308
                 L ++ L  N  +  LP   F         N  +L  L                 
Sbjct: 113 FQNVPLLTVLVLERNDLS-SLPRGIF--------HNTPKLTTLS---------------- 147

Query: 309 LLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS 368
                     M+ N +  I                        LQ L L +N L  H+  
Sbjct: 148 ----------MSNNNLERIEDDT--------------FQATTSLQNLQLSSNRLT-HVD- 181

Query: 369 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
            L  + +L   ++S N  S      L     +   + S N +  +
Sbjct: 182 -LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVV 220

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 43/308 (13%), Positives = 82/308 (26%), Gaps = 80/308 (25%)

Query: 106 PEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA 165
              +   C    + +                   + +    +         + + R +E 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 166 IYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLS 225
           + ++        T +      +  L M  N+      I   +   +   N+  L  L L 
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA------IR-YLPPHVFQ-NVPLLTVLVLE 125

Query: 226 HNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNA 285
            N L+                       KL  + +S+N    ++   +F           
Sbjct: 126 RNDLSSLP------------RGIFHNTPKLTTLSMSNNNLE-RIEDDTF--------QAT 164

Query: 286 SELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPAS 345
           + L+ LQ                          ++ N++  +                  
Sbjct: 165 TSLQNLQ--------------------------LSSNRLTHV-----------------D 181

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405
           +S +  L   N+  N L     S L     +E LD S+N  +       VELT L    +
Sbjct: 182 LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTIL---KL 233

Query: 406 SDNYLTGL 413
             N LT  
Sbjct: 234 QHNNLTDT 241

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 53/338 (15%), Positives = 96/338 (28%), Gaps = 107/338 (31%)

Query: 79  SSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTR 138
                +    L  L+++ N+     I+ +    + SL+ L L S      V   +     
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNL--ERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPS 187

Query: 139 LQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-----------------QITS-- 179
           L    + +N      L ++    ++E +  S  + +                   +T   
Sbjct: 188 LFHANVSYNL-----LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 242

Query: 180 SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLL 239
            L N   LV +D++ N      E+E K+        MQ L  L +S+N L          
Sbjct: 243 WLLNYPGLVEVDLSYN------ELE-KIMYHPFV-KMQRLERLYISNNRLVAL------- 287

Query: 240 PGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299
                    G     L+++DLS N     +                  L  L        
Sbjct: 288 ------NLYGQPIPTLKVLDLSHNHLL-HVERNQP---------QFDRLENLY------- 324

Query: 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHN 359
                              + +N I  +                  +S    L+ L L +
Sbjct: 325 -------------------LDHNSIVTL-----------------KLSTHHTLKNLTLSH 348

Query: 360 NNLQGHIPSCLGNL-TNLESLDLSNNKFSGRIPQQLVE 396
           N+      + L  L  N+    + +     +I  QL  
Sbjct: 349 NDWD---CNSLRALFRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 39/205 (19%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
            +   N+S+       N  S+L   + +E L+ + N    + ++     ++  L +L L+
Sbjct: 187 SLFHANVSY-------NLLSTLAIPIAVEELDASHNSI--NVVRG---PVNVELTILKLQ 234

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
                      + N+  L  + L +N     +      ++ LE +Y+S       +    
Sbjct: 235 HNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241
           + +  L VLD++ N       +   V +    P    L  L L HN +         L  
Sbjct: 292 QPIPTLKVLDLSHN------HLL-HVERNQ--PQFDRLENLYLDHNSIVT-------LKL 335

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFT 266
           +            L+ + LS N + 
Sbjct: 336 ST--------HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 26/204 (12%), Positives = 58/204 (28%), Gaps = 52/204 (25%)

Query: 212 LDPNMQNLNALNLSHNLLTGF-DQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP 270
           + P       ++ +      F D H+ +   +          +  +I+   ++    KLP
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP 61

Query: 271 SKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAG 330
           +            +  ++  L                           +   +I +I   
Sbjct: 62  AALL--------DSFRQVELL--------------------------NLNDLQIEEIDTY 87

Query: 331 IILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI 390
                           +    +Q L +  N ++   P    N+  L  L L  N  S  +
Sbjct: 88  AF--------------AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 391 PQQL-VELTFLAFFNVSDNYLTGL 413
           P+ +      L   ++S+N L  +
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERI 156

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 9e-19
 Identities = 66/391 (16%), Positives = 124/391 (31%), Gaps = 71/391 (18%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII----NLSCSLKLLDL 120
           +LN++H+ +  S         L +LE L+L+ N      I    +     +      LDL
Sbjct: 128 ELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDL 184

Query: 121 RSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL-GSIGNLRSLEAIYMSKCNFSGQIT- 178
                   +        RL  L L  N  S +++   I  L  LE   +    F  +   
Sbjct: 185 SLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 179 -----SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLL--------------------D 213
                S+L  L  L + +         ++    +   L                     +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 214 PNMQNLNALNLSHNLLTGFD----QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGK- 268
              Q+L  +N              + L           +      L  +DLS N  + K 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 269 LPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDIL 328
             S+S            + L+YL   LS    ++  + ++L    ++     ++ +  + 
Sbjct: 364 CCSQSDF--------GTTSLKYLD--LS-FNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 329 AGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 388
              +  +             L+ L  L++ + + +         L++LE L ++ N F  
Sbjct: 413 EFSVFLS-------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 389 RIP----QQLVELTFLAFFNVSDNYLTGLIP 415
                   +L  LTFL   ++S   L  L P
Sbjct: 460 NFLPDIFTELRNLTFL---DLSQCQLEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 68/365 (18%), Positives = 111/365 (30%), Gaps = 50/365 (13%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125
           L+LS   +  +I    +   L HL  L L  N   S  +     +   SL+ L       
Sbjct: 57  LDLSRCEI-QTI-EDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNL 112

Query: 126 WGKVPHSIGNFTRLQFLYLGFNNF-SGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
                  IG+   L+ L +  N   S  L     NL +LE + +S         + LR L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 185 TEL----VVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240
            ++    + LD++ N           +           L+ L L +N  +          
Sbjct: 173 HQMPLLNLSLDLSLNPM-------NFIQPGAFKE--IRLHKLTLRNNFDSL--------- 214

Query: 241 GNNEEPRTGCGFSKLRIIDLSDNRFTG--KLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
             N       G + L +  L    F     L          +  +   E R         
Sbjct: 215 --NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 299 G------KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS--NLK 350
                   L   +   L+++ I        ++ D        +               LK
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTI-------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 351 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK--FSGRIPQQLVELTFLAFFNVSDN 408
            L+ L   +N           +L +LE LDLS N   F G   Q     T L + ++S N
Sbjct: 326 SLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 409 YLTGL 413
            +  +
Sbjct: 384 GVITM 388

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 5e-18
 Identities = 58/360 (16%), Positives = 109/360 (30%), Gaps = 55/360 (15%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
           KL    + L  +   +  +  L  L+ LN+A N   S ++     NL+ +L+ LDL S  
Sbjct: 104 KLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNK 160

Query: 125 FWGKVPHSIGNFTRLQF----LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS- 179
                   +    ++      L L  N  +    G+   +  L  + +     S  +   
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219

Query: 180 SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLL 239
            ++ L  L V  +    +     +E           ++ L  L +    L   D +L   
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEK-----FDKSALEGLCNLTIEEFRLAYLDYYL--- 271

Query: 240 PGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299
              ++        + +    L       ++   S+            EL   +    P+ 
Sbjct: 272 ---DDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG-----WQHLELVNCKFGQFPTL 322

Query: 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHN 359
           KL                    NK  +  + +                +L  L+ L+L  
Sbjct: 323 KLKSLKRLTFT----------SNKGGNAFSEV----------------DLPSLEFLDLSR 356

Query: 360 NNLQ--GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
           N L   G         T+L+ LDLS N     +    + L  L   +   + L  +    
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 60/376 (15%), Positives = 105/376 (27%), Gaps = 93/376 (24%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS----SEIQPEIINLSCSLKLLDL 120
           KL L ++    ++   + +  L  LE   L L +F +     +     +   C+L + + 
Sbjct: 204 KLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 121 RSCG---FWGKVPHSIGNFTRLQFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQ 176
           R      +   +       T +    L                 + LE +      F   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 177 ITSSLR----------------NLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220
              SL+                +L  L  LD+++N       +  K      D    +L 
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN------GLSFKGCCSQSDFGTTSLK 376

Query: 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAM 280
            L+LS N +                     G  +L  +D   +    ++   S       
Sbjct: 377 YLDLSFNGVITM-------------SSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL---- 418

Query: 281 KIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDG 340
              +   L YL   +S                        +        GI         
Sbjct: 419 ---SLRNLIYLD--IS------------------------HTHTRVAFNGIF-------- 441

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIPQQLVELTF 399
                 + L  L+VL +  N+ Q +        L NL  LDLS  +     P     L+ 
Sbjct: 442 ------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 400 LAFFNVSDNYLTGLIP 415
           L   N++ N L  +  
Sbjct: 496 LQVLNMASNQLKSVPD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 57/314 (18%), Positives = 105/314 (33%), Gaps = 80/314 (25%)

Query: 76  SINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGN 135
            +   S  +   HLE +N     F + +++        SLK L   S    G    S  +
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLK--------SLKRLTFTSNK--GGNAFSEVD 345

Query: 136 FTRLQFLYLGFN--NFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193
              L+FL L  N  +F G    S     SL+ + +S       ++S+   L +L  LD  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFS 253
            ++      ++      +   +++NL  L++SH         +              G S
Sbjct: 405 HSN------LKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIF------------NGLS 445

Query: 254 KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMN 313
            L ++ ++ N F        F             L +L                      
Sbjct: 446 SLEVLKMAGNSFQENFLPDIF--------TELRNLTFLD--------------------- 476

Query: 314 IKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 373
                ++  ++  +      S  +F+        +L  LQVLN+ +N L+         L
Sbjct: 477 -----LSQCQLEQL------SPTAFN--------SLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 374 TNLESLDLSNNKFS 387
           T+L+ + L  N + 
Sbjct: 518 TSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 29/226 (12%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
           +L  + +       ++ S   L  LE+L+L+ N  +      +    + SLK LDL   G
Sbjct: 329 RLTFTSN----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRN 183
               +  +     +L+ L    +N           +LR+L  + +S  +           
Sbjct: 385 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 184 LTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD---------- 233
           L+ L VL MA NS       +      +    ++NL  L+LS   L              
Sbjct: 444 LSSLEVLKMAGNS------FQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 234 QHLVLLPGNNE----EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL 275
           Q L +   +N+            + L+ I L  N +    P   +L
Sbjct: 497 QVLNM--ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 7e-15
 Identities = 54/323 (16%), Positives = 97/323 (30%), Gaps = 69/323 (21%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
           NL  S K LDL          +S  +F  LQ L L          G+  +L  L  + ++
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLL 229
                     +   L+ L  L   + +          +  + +  +++ L  LN++HNL+
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPIG-HLKTLKELNVAHNLI 136

Query: 230 TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR 289
             F                    + L  +DLS N+    +                 ++ 
Sbjct: 137 QSFKLPEYF-----------SNLTNLEHLDLSSNKIQ-SIYCTDL--------RVLHQMP 176

Query: 290 YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGI----------ILSNKSFD 339
            L   L                       ++ N +  I  G           + +N    
Sbjct: 177 LLNLSLD----------------------LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214

Query: 340 GAIPASISNLKGLQVLNL------HNNNLQGHIPSCLGNLTNLESLDLSNNK---FSGRI 390
             +   I  L GL+V  L      +  NL+    S L  L NL   +        +   I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 391 PQQLVELTFLAFFNVSDNYLTGL 413
                 LT ++ F++    +  +
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERV 297

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 343 PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
             +  +L  L  L L  N +Q         L++L+ L       +      +  L  L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 403 FNVSDNYLTGLIPQGKQFATFDN 425
            NV+ N +       + F+   N
Sbjct: 129 LNVAHNLIQS-FKLPEYFSNLTN 150

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 19/92 (20%), Positives = 31/92 (33%)

Query: 324 IPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 383
           +P     + LS          S  +   LQVL+L    +Q        +L++L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 384 NKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
           N            L+ L      +  L  L  
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 9e-18
 Identities = 57/372 (15%), Positives = 117/372 (31%), Gaps = 75/372 (20%)

Query: 47  DCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP 106
           +    D         + V +++    ++      +    L + + +    +     ++  
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT----LNNQKIVTFKNSTM--RKLPA 68

Query: 107 EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI 166
            +++    ++LL+L          ++      +Q LY+GFN           N+  L  +
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSH 226
            + + + S        N  +L  L M+ N+      +E ++          +L  L LS 
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN------LE-RIEDDTFQ-ATTSLQNLQLSS 180

Query: 227 NLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCW-----NAMK 281
           N LT  D  L                  L   ++S N  +  L     +       N++ 
Sbjct: 181 NRLTHVDLSL---------------IPSLFHANVSYNLLS-TLAIPIAVEELDASHNSIN 224

Query: 282 IVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGA 341
           +V       L                  L +        +N + D               
Sbjct: 225 VVRGPVNVELTI----------------LKLQ-------HNNLTDT-------------- 247

Query: 342 IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLA 401
             A + N  GL  ++L  N L+  +      +  LE L +SNN+    +      +  L 
Sbjct: 248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 402 FFNVSDNYLTGL 413
             ++S N+L  +
Sbjct: 305 VLDLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 58/353 (16%), Positives = 108/353 (30%), Gaps = 72/353 (20%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            +   +      +  ++ L     +E LNL        EI       + +++ L +    
Sbjct: 55  IVTFKN-STMRKL-PAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNA 110

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
                PH   N   L  L L  N+ S    G   N   L  + MS  N       + +  
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL----LP 240
           T L  L ++ N       +       +    + +L   N+S+NLL+     + +      
Sbjct: 171 TSLQNLQLSSNR------LTH-----VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219

Query: 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300
            N+     G    +L I+ L  N  T               ++N   L  +         
Sbjct: 220 HNSINVVRGPVNVELTILKLQHNNLT-DTAW----------LLNYPGLVEVD-------- 260

Query: 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNN 360
                             ++YN++  I+                    ++ L+ L + NN
Sbjct: 261 ------------------LSYNELEKIMYH--------------PFVKMQRLERLYISNN 288

Query: 361 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
            L   +      +  L+ LDLS+N     + +   +   L    +  N +  L
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 79.2 bits (195), Expect = 7e-16
 Identities = 61/333 (18%), Positives = 94/333 (28%), Gaps = 89/333 (26%)

Query: 79  SSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTR 138
                  +  L  L L  ND   S +   I + +  L  L + +         +    T 
Sbjct: 115 PPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 139 LQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198
           LQ L L  N  +   L  I +L           N S  + S+L     +  LD + NS  
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHA--------NVSYNLLSTLAIPIAVEELDASHNSI- 223

Query: 199 GTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRII 258
                       +  P    L  L L HN LT              +      +  L  +
Sbjct: 224 ----------NVVRGPVNVELTILKLQHNNLT--------------DTAWLLNYPGLVEV 259

Query: 259 DLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRM 318
           DLS N    K+    F        V    L  L                           
Sbjct: 260 DLSYNELE-KIMYHPF--------VKMQRLERLY-------------------------- 284

Query: 319 MAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLES 378
           ++ N++                A+      +  L+VL+L +N+L  H+         LE+
Sbjct: 285 ISNNRL---------------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

Query: 379 LDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
           L L +N     +         L    +S N   
Sbjct: 329 LYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 40/217 (18%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
           + T  +  L LS + L     +   L  +  L   N++ N  ++       + +  +++ 
Sbjct: 168 QATTSLQNLQLSSNRL-----THVDLSLIPSLFHANVSYNLLST-------LAIPIAVEE 215

Query: 118 LDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI 177
           LD         V   +     L  L L  NN +      + N   L  + +S       +
Sbjct: 216 LDASHNSI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM 270

Query: 178 TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV 237
                 +  L  L ++ N     + +            +  L  L+LSHN L   +++  
Sbjct: 271 YHPFVKMQRLERLYISNNR---LVALNLYGQ------PIPTLKVLDLSHNHLLHVERNQ- 320

Query: 238 LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF 274
                         F +L  + L  N     L   + 
Sbjct: 321 ------------PQFDRLENLYLDHNSIV-TLKLSTH 344

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.6 bits (204), Expect = 7e-17
 Identities = 62/342 (18%), Positives = 113/342 (33%), Gaps = 68/342 (19%)

Query: 90  EWLNLA--LNDFNSSEIQPEIINLSCS-LKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGF 146
            W   A        + +  ++     +   +L++   G    +P  +     +  L +  
Sbjct: 14  AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPD 70

Query: 147 NNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS---SLRNLTELVVLDMAQNSYGGTMEI 203
           NN +  L      LR+LE           Q+TS       L EL +              
Sbjct: 71  NNLT-SLPALPPELRTLEVSGN-------QLTSLPVLPPGLLELSIFSNPLTH------- 115

Query: 204 EGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHL----VLLPGNNEEPRTGCGFSKLRIID 259
                   L      L  L +  N LT           L   +N+        S+L  + 
Sbjct: 116 --------LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLW 167

Query: 260 LSDNRFTGKLPSKSFLCWNAMKIVNAS--ELRYLQDVLSPSGKLLMTTYDYLLTMNIKGR 317
             +N+ T  LP       + ++ ++ S  +L  L  +     +L       L   N +  
Sbjct: 168 AYNNQLT-SLPM----LPSGLQELSVSDNQLASLPTLP---SELY-----KLWAYNNR-- 212

Query: 318 MMAYNKIPDILAG---IILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT 374
                 +P + +G   +I+S      ++P   S L   + L +  N L   +P     L 
Sbjct: 213 ---LTSLPALPSGLKELIVSGNRL-TSLPVLPSEL---KELMVSGNRLT-SLPMLPSGLL 264

Query: 375 NLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
              SL +  N+ + R+P+ L+ L+     N+  N L+    Q
Sbjct: 265 ---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 2e-16
 Identities = 60/361 (16%), Positives = 112/361 (31%), Gaps = 81/361 (22%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            LN+  S L  ++          H+  L +  N+  S  +          L+ L++    
Sbjct: 44  VLNVGESGL-TTLPDCL----PAHITTLVIPDNNLTS--LPALP----PELRTLEVSGNQ 92

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
               +P        L        +           L  L   ++     +  +      L
Sbjct: 93  L-TSLPVLPPGLLELSIFSNPLTHLPA----LPSGLCKL---WIFGNQLT-SLPVLPPGL 143

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244
            EL V D    S               L      L  L   +N LT        LP    
Sbjct: 144 QELSVSDNQLAS---------------LPALPSELCKLWAYNNQLTS-------LPML-- 179

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
                   S L+ + +SDN+    LP+               +L    + L        T
Sbjct: 180 -------PSGLQELSVSDNQLA-SLPTL---------PSELYKLWAYNNRL--------T 214

Query: 305 TYDYLLTMNIKGRMMAYNKIPDI------LAGIILSNKSFDGAIPASISNLKGLQVLNLH 358
           +   L +  +K  +++ N++  +      L  +++S      ++P   S L     L+++
Sbjct: 215 SLPALPS-GLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLPSGL---LSLSVY 269

Query: 359 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGK 418
            N L   +P  L +L++  +++L  N  S R  Q L E+T    ++              
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328

Query: 419 Q 419
           +
Sbjct: 329 R 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 58/359 (16%), Positives = 98/359 (27%), Gaps = 94/359 (26%)

Query: 61  GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDL 120
             +  L +S + L  S+        L+ L   +  L           +  L   L  L +
Sbjct: 81  PELRTLEVSGNQL-TSL--PVLPPGLLELSIFSNPLT---------HLPALPSGLCKLWI 128

Query: 121 RSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS 180
                   +P        LQ L +  N  +  L      L  L A          Q+TS 
Sbjct: 129 FGNQL-TSLPVLPPG---LQELSVSDNQLA-SLPALPSELCKLWAYNN-------QLTSL 176

Query: 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240
               + L  L ++ N      ++        L      L  L   +N LT          
Sbjct: 177 PMLPSGLQELSVSDN------QLAS------LPTLPSELYKLWAYNNRLTSLPALP---- 220

Query: 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300
                       S L+ + +S NR T  LP               SEL+ L         
Sbjct: 221 ------------SGLKELIVSGNRLTS-LPV------------LPSELKEL--------- 246

Query: 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGII---LSNKSFDGAIPASISNLKGLQVLNL 357
                   +    +         +P + +G++   +        +P S+ +L     +NL
Sbjct: 247 -------MVSGNRLT-------SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 358 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
             N L       L  +T+         +F         E   L     + ++L      
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREG 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 26/206 (12%), Positives = 53/206 (25%), Gaps = 19/206 (9%)

Query: 61  GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLS-------- 112
             + +L++S      S+   +   +L  L   N  L    +     + + +S        
Sbjct: 181 SGLQELSVSD-NQLASL--PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP 237

Query: 113 ---CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
                LK L +        +P        L  L +  N  +  L  S+ +L S   + + 
Sbjct: 238 VLPSELKELMVSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLL 229
               S +   +LR +T           +        +  + L       L          
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

Query: 230 TGFDQHLVLLPGNNEEPRTGCGFSKL 255
                        +         S+ 
Sbjct: 353 ADRWHMFGQEDNADAFSLFLDRLSET 378

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 55/326 (16%), Positives = 102/326 (31%), Gaps = 47/326 (14%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
            +    +LLDL              +F  L+ L L  N  S    G+  NL +L  + + 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLL 229
                         L+ L  LD+++N      +I   +  ++   ++ NL +L +  N L
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISEN------KIV-ILLDYMFQ-DLYNLKSLEVGDNDL 140

Query: 230 TGFD----------QHLVLLPGNNE----EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL 275
                         + L L                    L ++ L        +   SF 
Sbjct: 141 VYISHRAFSGLNSLEQLTL--EKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFK 197

Query: 276 CWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI-------- 327
                       L+ L+  +S    L   T + L  +N+    + +  +  +        
Sbjct: 198 R--------LYRLKVLE--ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 328 --LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 385
             L  + LS         + +  L  LQ + L    L    P     L  L  L++S N+
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 386 FSGRIPQQLVE-LTFLAFFNVSDNYL 410
            +  + + +   +  L    +  N L
Sbjct: 308 LT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 43/285 (15%), Positives = 85/285 (29%), Gaps = 71/285 (24%)

Query: 129 VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV 188
           VP  I   T  + L LG N           +   LE + +++   S     +  NL  L 
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 189 VLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT 248
            L +  N       ++  +   +    + NL  L++S N +                   
Sbjct: 84  TLGLRSN------RLK-LIPLGVFT-GLSNLTKLDISENKIVIL------------LDYM 123

Query: 249 GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDY 308
                 L+ +++ DN     +  ++F           + L  L                 
Sbjct: 124 FQDLYNLKSLEVGDNDLV-YISHRAF--------SGLNSLEQLT---------------- 158

Query: 309 LLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS 368
                     +    +  I                 ++S+L GL VL L + N+      
Sbjct: 159 ----------LEKCNLTSIPTE--------------ALSHLHGLIVLRLRHLNINAIRDY 194

Query: 369 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
               L  L+ L++S+  +   +    +    L   +++   LT +
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 57/344 (16%), Positives = 109/344 (31%), Gaps = 77/344 (22%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
            +  H+ +L L+ + +  ++    +   L +L  L L  N      I   +     +L  
Sbjct: 53  ASFPHLEELELNENIV-SAV-EPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTK 108

Query: 118 LDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI 177
           LD+        + +   +   L+ L +G N+       +   L SLE + + KCN +   
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168

Query: 178 TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD---- 233
           T +L +L  L+VL +   +      I   +  +     +  L  L +SH           
Sbjct: 169 TEALSHLHGLIVLRLRHLN------IN-AIRDYSFK-RLYRLKVLEISHWPYLDTMTPNC 220

Query: 234 ------QHLVLLPGNNE----EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV 283
                   L +   +                LR ++LS N  +  +              
Sbjct: 221 LYGLNLTSLSI--THCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSML--------H 269

Query: 284 NASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIP 343
               L+ +                           +   ++  +         +F G   
Sbjct: 270 ELLRLQEI--------------------------QLVGGQLAVV------EPYAFRG--- 294

Query: 344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387
                L  L+VLN+  N L     S   ++ NLE+L L +N  +
Sbjct: 295 -----LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
           A+P  I      ++L+L  N ++        +  +LE L+L+ N  S   P     L  L
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 401 AFFNVSDNYLTGL 413
               +  N L  +
Sbjct: 83  RTLGLRSNRLKLI 95

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 50/323 (15%), Positives = 88/323 (27%), Gaps = 73/323 (22%)

Query: 73  LFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCS-LKLLDLRSCGFWGKVPH 131
               +   + + K + L+ L +      S  +   +  L  S L+ L L +    G  P 
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 132 SIGNFTRLQFLYLGFNNFS----GDLLGSIGNL--RSLEAIYMSKCNFSGQITSSLRNLT 185
            +   T      L   N S       L  +       L+ + +++ +        +R   
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 186 ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEE 245
            L  LD++ N   G   +       L       L  L L +  +         L      
Sbjct: 174 ALSTLDLSDNPELGERGLISA----LCPLKFPTLQVLALRNAGMETPSGVCSALAAA--- 226

Query: 246 PRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTT 305
                   +L+ +DLS N       + S    + +  +N S                   
Sbjct: 227 ------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS------------------- 261

Query: 306 YDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGH 365
                          +  +  +  G+                    L VL+L  N L   
Sbjct: 262 ---------------FTGLKQVPKGL-----------------PAKLSVLDLSYNRLD-R 288

Query: 366 IPSCLGNLTNLESLDLSNNKFSG 388
            PS    L  + +L L  N F  
Sbjct: 289 NPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 44/223 (19%), Positives = 68/223 (30%), Gaps = 32/223 (14%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS--SEIQPEIINLSCSLKLLD 119
            + +L L +  + G+            L  LNL    + +  + +      L   LK+L 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 120 LRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDL-------LGSIGNLRSLEAIYMSKCN 172
           +            +  F  L  L L  N   G+              L+ L         
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 173 FSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF 232
            SG  ++      +L  LD++ NS                      LN+LNLS   L   
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW-------PSQLNSLNLSFTGLKQV 268

Query: 233 DQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL 275
            + L                +KL ++DLS NR     PS   L
Sbjct: 269 PKGL---------------PAKLSVLDLSYNRLDR-NPSPDEL 295

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 45/266 (16%), Positives = 78/266 (29%), Gaps = 31/266 (11%)

Query: 171 CNFSGQI--TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNL 228
           CNFS      SS  N      +++          ++    +  L      + +L+L    
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74

Query: 229 LTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP-SKSFLCWNAMKIVNASE 287
           +        +L G         G S L+ + L +   TG  P          + I+N   
Sbjct: 75  VRAARIPSRILFGALR----VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 288 LRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGII----------LSNKS 337
           +       +     L     +L    +K   +A     +     +          LS+  
Sbjct: 131 VS-----WATRDAWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 338 FDGAIPASIS----NLKGLQVLNLHNNNLQ---GHIPSCLGNLTNLESLDLSNNKFSGRI 390
             G      +        LQVL L N  ++   G   +       L+ LDLS+N      
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 391 PQQL-VELTFLAFFNVSDNYLTGLIP 415
                   + L   N+S   L  +  
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPK 270

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 21/176 (11%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC--SLKLLD 119
            +  L+++ +       S   +     L  L+L+ N           +      +L++L 
Sbjct: 150 GLKVLSIAQAHSLN--FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 120 LRSCGFW---GKVPHSIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLEAIYMSKCNFSG 175
           LR+ G     G          +LQ L L  N+        S      L ++ +S      
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 176 QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTG 231
                   L+   VLD++ N          ++ +      +  +  L+L  N    
Sbjct: 268 VPKGLPAKLS---VLDLSYN----------RLDRNPSPDELPQVGNLSLKGNPFLD 310

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 60/350 (17%), Positives = 108/350 (30%), Gaps = 12/350 (3%)

Query: 79  SSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTR 138
            +S +  L  L  L ++ N      +   +   +  L+ LDL           S      
Sbjct: 37  WTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVN 91

Query: 139 LQFLYLGFNNF-SGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSY 197
           L+ L L FN F +  +    GN+  L+ + +S  +        + +L    VL +   +Y
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 198 GGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRI 257
           G   + EG     L D N ++L+ +  ++          V    N E     C     + 
Sbjct: 152 GEKEDPEG-----LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 258 IDLSDNRFTG-KLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKG 316
                        P  S L  N ++    S +R LQ V   +      +   L       
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 317 RMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL 376
                      L+   + +  F             + + N   +  +     C   ++  
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 377 ESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNT 426
             LD SNN  +  + +    LT L    +  N L  L    +      + 
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 60/384 (15%), Positives = 127/384 (33%), Gaps = 55/384 (14%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            L+LSH+ L        S +  V+L+ L+L+ N F++  I  E  N+S  LK L L +  
Sbjct: 73  YLDLSHNKL-----VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTH 126

Query: 125 FWGKVPHSIGNFTRLQ-FLYLGFNNFSGDLLGSIGNLR--SLEAIYMSKCNFSGQITSSL 181
                   I +    +  L LG      +    + +    SL  ++ +   F   +  S+
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241
           + +  L + ++                  +L     N    NL+ N +       + +  
Sbjct: 187 KTVANLELSNIKCVLEDNKCS----YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF-LCWNAMKIVNASELRYLQDVLSPSG- 299
                      + +    +S+ +  G+L  + F     ++K ++  ++         S  
Sbjct: 243 LVWH-------TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 300 --KLLMTTYDYL-------LTMNIKGRM-------MAYNKIPDILAGI----------IL 333
                              + M    ++        + N + D +             IL
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 334 SNKSFD--GAIPASISNLKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLDLSNNKFSGRI 390
                     I    + +K LQ L++  N++             +L SL++S+N  +  I
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 391 PQQL-VELTFLAFFNVSDNYLTGL 413
            + L   +  L   ++  N +  +
Sbjct: 416 FRCLPPRIKVL---DLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 53/328 (16%), Positives = 103/328 (31%), Gaps = 77/328 (23%)

Query: 66  LNLSHSCLFGSINSSSSLYKLV---HLEWLNLALNDFNSSEIQPEIINLSCSLK---LLD 119
            NL+ + +  + NS   + +LV    + + +++           +      SLK   +  
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 120 LRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS 179
           + S  F     +    F+ +       +      +     +     +  S    +  +  
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 180 SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLL 239
           +  +LTEL  L +  N      +I            M++L  L++S N ++         
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTT------QMKSLQQLDISQNSVS--------- 387

Query: 240 PGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299
              +E+         L  +++S N     L    F C                       
Sbjct: 388 --YDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRC----------------------- 418

Query: 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHN 359
                     L   IK   +  NKI                +IP  +  L+ LQ LN+ +
Sbjct: 419 ----------LPPRIKVLDLHSNKI---------------KSIPKQVVKLEALQELNVAS 453

Query: 360 NNLQGHIPSC-LGNLTNLESLDLSNNKF 386
           N L+  +P      LT+L+ + L  N +
Sbjct: 454 NQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 48/312 (15%), Positives = 99/312 (31%), Gaps = 41/312 (13%)

Query: 128 KVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTEL 187
            VP  +    +   L +  N  S      I +L  L  + +S         S  +   EL
Sbjct: 14  HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 188 VVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR 247
             LD++ N               +      NL  L+LS N                  P 
Sbjct: 72  EYLDLSHNKL-----------VKISCHPTVNLKHLDLSFNAFDAL-------------PI 107

Query: 248 TGC--GFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTT 305
                  S+L+ + LS      K         N  K++      Y +       +   T 
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

Query: 306 YDYLL---------TMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLN 356
             +++          +++  + +A  ++ +I   +  +  S+  +I A +     L  L 
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226

Query: 357 LHNNNLQGHIPSCLGNL---TNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
           L+N     +    +  L   T +    +SN K  G++  +  + +  +   +S + +   
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 414 IPQGKQFATFDN 425
           +    Q   ++ 
Sbjct: 287 VFGFPQSYIYEI 298

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP- 391
            S       +P  +S  +   +LN+  N +     S + +L+ L  L +S+N+    +  
Sbjct: 7   RSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDI 62

Query: 392 ---QQLVELTFLAFFNVSDNYLTGL 413
              +   EL +L   ++S N L  +
Sbjct: 63  SVFKFNQELEYL---DLSHNKLVKI 84

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 58/319 (18%), Positives = 99/319 (31%), Gaps = 87/319 (27%)

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
            C L+++     G   KVP  +        L L  N  +    G   NL++L  + +   
Sbjct: 30  QCHLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 172 NFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNM-QNLNALNLSHNLLT 230
             S     +   L +L  L +++N      +++       L   M + L  L +  N +T
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKN------QLK------ELPEKMPKTLQELRVHENEIT 134

Query: 231 GFD----------QHLVLLPGNNE------EPRTGCGFSKLRIIDLSDNRFTGKLPSKSF 274
                          + L  G N       E     G  KL  I ++D   T  +P    
Sbjct: 135 KVRKSVFNGLNQMIVVEL--GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP 191

Query: 275 LCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILS 334
                        L  L                           +  NKI  + A     
Sbjct: 192 -----------PSLTELH--------------------------LDGNKITKVDAA---- 210

Query: 335 NKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 394
                     S+  L  L  L L  N++       L N  +L  L L+NNK   ++P  L
Sbjct: 211 ----------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 395 VELTFLAFFNVSDNYLTGL 413
            +  ++    + +N ++ +
Sbjct: 260 ADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 64/333 (19%), Positives = 111/333 (33%), Gaps = 80/333 (24%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
           KN  ++  L L ++ +  S  S  +   LV LE L L+ N     E+      +  +L+ 
Sbjct: 73  KNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQL--KELPE---KMPKTLQE 125

Query: 118 LDLRSCGFWGKVPHSI-GNFTRLQFLYLGFNNFSGDLL--GSIGNLRSLEAIYMSKCNFS 174
           L +       KV  S+     ++  + LG N      +  G+   ++ L  I ++  N +
Sbjct: 126 LRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 175 GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQ 234
                   +LTEL    +  N       I  KV    L   + NL  L LS N ++  D 
Sbjct: 185 TIPQGLPPSLTEL---HLDGNK------IT-KVDAASLK-GLNNLAKLGLSFNSISAVD- 232

Query: 235 HLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDV 294
                        +      LR + L++N+   K+P               ++ +Y+Q V
Sbjct: 233 -----------NGSLANTPHLRELHLNNNKLV-KVPG------------GLADHKYIQVV 268

Query: 295 LSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQV 354
                        YL            N I  I +                 +       
Sbjct: 269 -------------YL----------HNNNISAIGSNDFCPPGYN--------TKKASYSG 297

Query: 355 LNLHNNNLQGHI--PSCLGNLTNLESLDLSNNK 385
           ++L +N +Q     PS    +    ++ L N K
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 6e-15
 Identities = 66/364 (18%), Positives = 108/364 (29%), Gaps = 88/364 (24%)

Query: 61  GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDF--------------NSSEIQP 106
            H+  L  S + L   +        L  L   N  L                 N  E  P
Sbjct: 91  PHLESLVASCNSL-TEL--PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 147

Query: 107 EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI 166
           E+ N S  LK++D+ +     K+P    +   L+F+  G N      L  + NL  L AI
Sbjct: 148 ELQNSS-FLKIIDVDNNSL-KKLPDLPPS---LEFIAAGNNQLEE--LPELQNLPFLTAI 200

Query: 167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSH 226
           Y    +   ++     +L  +       N      E+           N+  L  +   +
Sbjct: 201 YADNNSLK-KLPDLPLSLESI---VAGNNILEELPEL----------QNLPFLTTIYADN 246

Query: 227 NLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS 286
           NLL                         L  +++ DN  T  LP                
Sbjct: 247 NLLKTLPDLP----------------PSLEALNVRDNYLT-DLPELP------------Q 277

Query: 287 ELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI------LAGIILSNKSFDG 340
            L +L        + + +    L   N+     + N+I  +      L  + +SN     
Sbjct: 278 SLTFLD-----VSENIFSGLSELPP-NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI- 330

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
            +PA    L   + L    N+L   +P    NL     L +  N      P     +  L
Sbjct: 331 ELPALPPRL---ERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDL 382

Query: 401 AFFN 404
              +
Sbjct: 383 RMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 54/354 (15%), Positives = 100/354 (28%), Gaps = 101/354 (28%)

Query: 81  SSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC------------SLKLLDLRSCGFWGK 128
                +        A +++  +   P                       L+L + G    
Sbjct: 28  VEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SS 85

Query: 129 VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV 188
           +P    +   L+ L    N+ + +L     +L+SL     +    S            L 
Sbjct: 86  LPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LE 134

Query: 189 VLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT 248
            L ++ N      E+           N   L  +++ +N L         LP        
Sbjct: 135 YLGVSNNQLEKLPEL----------QNSSFLKIIDVDNNSLKK-------LPD------- 170

Query: 249 GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDY 308
                 L  I   +N+   +LP           + N   L  +                 
Sbjct: 171 --LPPSLEFIAAGNNQLE-ELPE----------LQNLPFLTAIY---------------- 201

Query: 309 LLTMNIKGRMMAYNKIPDI------LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNL 362
                        N +  +      L  I+  N   +      + NL  L  +   NN L
Sbjct: 202 ----------ADNNSLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLL 249

Query: 363 QGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
           +  +P       +LE+L++ +N  +  +P+    LTFL       + L+ L P 
Sbjct: 250 K-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 9e-14
 Identities = 43/310 (13%), Positives = 87/310 (28%), Gaps = 82/310 (26%)

Query: 104 IQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSL 163
           I P  ++    L+     S     ++P    N       Y  ++ +  +     G  R +
Sbjct: 3   INPRNVSN-TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 164 EAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALN 223
               +  C              +   L++          +        L     +L +L 
Sbjct: 61  AVSRLRDCL-----------DRQAHELELNNLG------LSS------LPELPPHLESLV 97

Query: 224 LSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV 283
            S N LT   +    L               L + + +    +   P   +L  +  ++ 
Sbjct: 98  ASCNSLTELPELPQSL-------------KSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144

Query: 284 NASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIP 343
              EL+                   L  +++       N +  +               P
Sbjct: 145 KLPELQNSSF---------------LKIIDVDN-----NSLKKL---------------P 169

Query: 344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF 403
               +L   + +   NN L+  +P  L NL  L ++   NN    ++P   + L  +   
Sbjct: 170 DLPPSL---EFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESI--- 220

Query: 404 NVSDNYLTGL 413
              +N L  L
Sbjct: 221 VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 58/374 (15%), Positives = 99/374 (26%), Gaps = 109/374 (29%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121
              +L L++  L  S+          HLE L  + N    +E+     +L  SL + +  
Sbjct: 72  QAHELELNNLGL-SSLPEL-----PPHLESLVASCNSL--TELPELPQSLK-SLLVDNNN 122

Query: 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL 181
                   P        L++L +  N      L  + N   L+ I +        +    
Sbjct: 123 LKALSDLPPL-------LEYLGVSNNQLEK--LPELQNSSFLKIIDVDNN----SLKKLP 169

Query: 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241
                L  +    N      E+           N+  L A+   +N L            
Sbjct: 170 DLPPSLEFIAAGNNQLEELPEL----------QNLPFLTAIYADNNSLKKLPDLP----- 214

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301
                        L  I   +N    +LP           + N   L  +          
Sbjct: 215 -----------LSLESIVAGNNILE-ELPE----------LQNLPFLTTIY--------- 243

Query: 302 LMTTYDYLLTMNIKGRMMAYNKIPDI------LAGIILSNKSFDGAIPASISNLKGLQVL 355
                               N +  +      L  + + +      +P    +L  L V 
Sbjct: 244 -----------------ADNNLLKTLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVS 285

Query: 356 NLHNNNLQGHIPS-----CLGN--------LTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
               + L    P+        N          +LE L++SNNK    +P     L  L  
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL-- 342

Query: 403 FNVSDNYLTGLIPQ 416
              S N+L  +   
Sbjct: 343 -IASFNHLAEVPEL 355

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 55/355 (15%), Positives = 103/355 (29%), Gaps = 78/355 (21%)

Query: 61  GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDL 120
             +  +   ++     +     L  L  L  +    N          + +L  SL+ +  
Sbjct: 173 PSLEFIAAGNN----QLEELPELQNLPFLTAIYADNNSLKK------LPDLPLSLESIVA 222

Query: 121 RSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS 180
            +     +    + N   L  +Y   N     L     +L +L        N+   +   
Sbjct: 223 GNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRD----NYLTDLPEL 275

Query: 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240
            ++LT L V +   +                L     NL  LN S N +           
Sbjct: 276 PQSLTFLDVSENIFSG---------------LSELPPNLYYLNASSNEIRSLCDLP---- 316

Query: 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300
                         L  +++S+N+   +LP+                   L+  L  S  
Sbjct: 317 ------------PSLEELNVSNNKLI-ELPA---------------LPPRLE-RLIASFN 347

Query: 301 LLMTTYDYLLTMNIKGRMMAYNKI---PDILAGI-ILSNKSFDGAIPASISNLKGLQVLN 356
            L      L   N+K   + YN +   PDI   +  L   S    +P    NLK    L+
Sbjct: 348 HL-AEVPELPQ-NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK---QLH 402

Query: 357 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
           +  N L+   P    ++ +L    +++ +              L       ++  
Sbjct: 403 VETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 58/349 (16%), Positives = 96/349 (27%), Gaps = 107/349 (30%)

Query: 86  LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGN---------- 135
              L+      +  N +E+  E  N+  S          +    P   G           
Sbjct: 10  NTFLQEPLRHSS--NLTEMPVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 136 ---FTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192
                +   L L     S  L     +L SL     S  + + ++    ++L  L+V + 
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD--------QHLVLLPGNNE 244
              +               L      L  L +S+N L            + + +   NN 
Sbjct: 122 NLKA---------------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV--DNNS 164

Query: 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMT 304
             +       L  I   +N+   +LP           + N   L  +             
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQLE-ELPE----------LQNLPFLTAIY------------ 201

Query: 305 TYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQG 364
                            N +                 +P    +   L+ +   NN L+ 
Sbjct: 202 --------------ADNNSLKK---------------LPDLPLS---LESIVAGNNILE- 228

Query: 365 HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
            +P  L NL  L ++   NN     +P     L  L   NV DNYLT L
Sbjct: 229 ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLTDL 272

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 74/373 (19%), Positives = 118/373 (31%), Gaps = 74/373 (19%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            L L ++     +  + +   L +LE L L   + + + +         SL++L LR   
Sbjct: 83  ILKLDYNQF-LQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 125 FWGKVPHSI-GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY----------MSKCNF 173
                P S   N  R   L L FN         + N +                M++   
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 174 SGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233
             +   +    T +  LD++ N +     +  +    +    +Q+L  L+ S+N+ + F 
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGF--KESMAKRFFDAIAGTKIQSLI-LSNSYNMGSSFG 257

Query: 234 QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD 293
                 P N      G   S ++  DLS ++    L    F         + ++L  L  
Sbjct: 258 HTNFKDPDNF--TFKGLEASGVKTCDLSKSKIF-ALLKSVF--------SHFTDLEQLT- 305

Query: 294 VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ 353
                                    +A N+I  I          F G        L  L 
Sbjct: 306 -------------------------LAQNEINKIDDNA------FWG--------LTHLL 326

Query: 354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL-VELTFLAFFNVSDNYLTG 412
            LNL  N L         NL  LE LDLS N     +  Q  + L  L    +  N L  
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS 385

Query: 413 LIPQGKQFATFDN 425
            +P G     FD 
Sbjct: 386 -VPDG----IFDR 393

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 53/325 (16%), Positives = 104/325 (32%), Gaps = 68/325 (20%)

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
           S         + G   +VP  +     + ++ L  N+ +     S   L+ L+ + + + 
Sbjct: 9   SVIGYNAICINRGL-HQVP-EL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ 64

Query: 172 NFSGQITS-SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLT 230
                I + + R L+ L++L +  N      +   ++     +  + NL  L L+   L 
Sbjct: 65  TPGLVIRNNTFRGLSSLIILKLDYN------QFL-QLETGAFN-GLANLEVLTLTQCNLD 116

Query: 231 GFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRY 290
           G      +L GN          + L ++ L DN      P+  F        +N      
Sbjct: 117 G-----AVLSGN-----FFKPLTSLEMLVLRDNNIKKIQPASFF--------LNMRRFHV 158

Query: 291 LQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS--N 348
           L                           + +NK+  I                   +   
Sbjct: 159 LD--------------------------LTFNKVKSICEED------LLNFQGKHFTLLR 186

Query: 349 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ---QLVELTFLAFFNV 405
           L  + + +++   L           T++ +LDLS N F   + +     +  T +    +
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 406 SDNYLTGLIPQGKQFATFDNTSFDG 430
           S++Y  G       F   DN +F G
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKG 271

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 54/303 (17%), Positives = 97/303 (32%), Gaps = 73/303 (24%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL--GSIGNLRSLEAIY 167
            +  S   L+L S              T+L  L L  N  S       S     SL+ + 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN 227
           +S       ++S+   L +L  LD   ++      ++      +   +++NL  L++SH 
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSN------LKQMSEFSVFL-SLRNLIYLDISHT 136

Query: 228 LLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE 287
                   +              G S L ++ ++ N F        F             
Sbjct: 137 HTRVAFNGIFN------------GLSSLEVLKMAGNSFQENFLPDIF--------TELRN 176

Query: 288 LRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS 347
           L +L                           ++  ++  +      S  +F+        
Sbjct: 177 LTFLD--------------------------LSQCQLEQL------SPTAFNS------- 197

Query: 348 NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE--LTFLAFFNV 405
            L  LQVLN+ +NN           L +L+ LD S N       +Q ++   + LAF N+
Sbjct: 198 -LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

Query: 406 SDN 408
           + N
Sbjct: 256 TQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 48/236 (20%), Positives = 79/236 (33%), Gaps = 33/236 (13%)

Query: 49  CSWDGVHCNKNT---------GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDF 99
           CS   + CN                +L L  + L           KL  L  L+L+ N  
Sbjct: 7   CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 100 NSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSG-DLLGSIG 158
           +      +    + SLK LDL   G    +  +     +L+ L    +N           
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 159 NLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN 218
           +LR+L  + +S  +           L+ L VL MA NS+              +   ++N
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-------LPDIFTELRN 176

Query: 219 LNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF 274
           L  L+LS   L                P      S L+++++S N F   L +  +
Sbjct: 177 LTFLDLSQCQLEQL------------SPTAFNSLSSLQVLNMSHNNFF-SLDTFPY 219

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 34/227 (14%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
                + KL+LS + L      S S +    L++L+L+ N      +    + L   L+ 
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLE-QLEH 105

Query: 118 LDLRSCGFWGKVPHSI-GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQ 176
           LD +          S+  +   L +L +   +      G    L SLE + M+  +F   
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 177 ITS-SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD-- 233
                   L  L  LD++Q        +E ++     + ++ +L  LN+SHN     D  
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQ------LE-QLSPTAFN-SLSSLQVLNMSHNNFFSLDTF 217

Query: 234 --------QHLVL-------LPGNNEEPRTGCGFSKLRIIDLSDNRF 265
                   Q L               +       S L  ++L+ N F
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQH----FPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 48/203 (23%)

Query: 218 NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGK-LPSKSFLC 276
           +   L L  N L             +         ++L  + LS N  + K   S+S   
Sbjct: 29  SATRLELESNKLQ------------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 277 WNAMKIVNAS--ELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILS 334
             ++K ++ S   +  +        +L     ++L           ++ +  +    +  
Sbjct: 77  TTSLKYLDLSFNGVITMSSNFLGLEQL-----EHL--------DFQHSNLKQMSEFSVFL 123

Query: 335 NKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP--- 391
           +             L+ L  L++ + + +         L++LE L ++ N F        
Sbjct: 124 S-------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 392 -QQLVELTFLAFFNVSDNYLTGL 413
             +L  LTFL   ++S   L  L
Sbjct: 171 FTELRNLTFL---DLSQCQLEQL 190

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 324 IPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ-GHIPS-CLGNLTNLESLDL 381
           IP     + L +             L  L  L+L +N L      S      T+L+ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 382 SNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
           S N     +    + L  L   +   + L  +    
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 58/330 (17%), Positives = 97/330 (29%), Gaps = 101/330 (30%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
            +S    LLDL++                L  L L  N  S     +   LR L+ +Y+S
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 170 KCN--------FSG---------QITS----SLRNLTELVVLDMAQNSYGGTMEIEGKVH 208
           K +         S          +I          L  +  ++M  N    +   E    
Sbjct: 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG-FEPGAF 169

Query: 209 KWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGK 268
             L       LN L +S   LTG  + L                  L  + L  N+    
Sbjct: 170 DGL------KLNYLRISEAKLTGIPKDL---------------PETLNELHLDHNKIQ-A 207

Query: 269 LPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDIL 328
           +  +  L          S+L  L                           + +N+I  I 
Sbjct: 208 IELEDLL--------RYSKLYRLG--------------------------LGHNQIRMI- 232

Query: 329 AGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 388
                 N S           L  L+ L+L NN L   +P+ L +L  L+ + L  N  + 
Sbjct: 233 -----ENGSLS--------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT- 277

Query: 389 RIP-------QQLVELTFLAFFNVSDNYLT 411
           ++           V+  +    ++ +N + 
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 51/307 (16%), Positives = 86/307 (28%), Gaps = 87/307 (28%)

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
            C L+++     G    VP  I        L L  N+ S         L+ L A+ +   
Sbjct: 32  HCHLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88

Query: 172 NFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTG 231
               +I+                        I  K         ++ L  L +S N L  
Sbjct: 89  ----KISK-----------------------IHEKAFS-----PLRKLQKLYISKNHLVE 116

Query: 232 FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL 291
              +L                S L  + + DNR   K+P   F     M  +        
Sbjct: 117 IPPNL---------------PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 292 QDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG 351
                P              + +    ++  K+  I   +                  + 
Sbjct: 161 NSGFEP---------GAFDGLKLNYLRISEAKLTGIPKDL-----------------PET 194

Query: 352 LQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIP----QQLVELTFLAFFNVS 406
           L  L+L +N +Q  I    L   + L  L L +N+    I       L  L  L   ++ 
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLREL---HLD 249

Query: 407 DNYLTGL 413
           +N L+ +
Sbjct: 250 NNKLSRV 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 52/364 (14%), Positives = 108/364 (29%), Gaps = 107/364 (29%)

Query: 66  LNLSHSCLFGSINSSSSLY--KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSC 123
            +LS +  + +I+ + + Y       E   L   + N +    +   ++     L L   
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN-QFSELQLNRL 69

Query: 124 GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRN 183
                +P ++    ++  L +  N     L     +L  L+A          ++++    
Sbjct: 70  NL-SSLPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDN-------RLST---- 114

Query: 184 LTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNN 243
                                       L     +L  L++ +N LT       +LP   
Sbjct: 115 ----------------------------LPELPASLKHLDVDNNQLT-------MLP--- 136

Query: 244 EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLM 303
           E P      + L  I+  +N+ T  LP               + L  L            
Sbjct: 137 ELP------ALLEYINADNNQLT-MLPEL------------PTSLEVL------------ 165

Query: 304 TTYDYLLTMNIKGRMMAYNKIPDILAG---IILSNKSFDGAIPASISNLKGLQ----VLN 356
                +    +         +P++      + +S    + ++PA        +       
Sbjct: 166 ----SVRNNQL-------TFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213

Query: 357 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
              N +  HIP  + +L    ++ L +N  S RI + L + T    ++    Y +    Q
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 417 GKQF 420
               
Sbjct: 273 QNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 42/266 (15%), Positives = 84/266 (31%), Gaps = 78/266 (29%)

Query: 153 LLGSIGNLRSLE--AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW 210
           ++  I N  SL   + Y +         S+     +  +    +N          +    
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN----------EAVSL 52

Query: 211 LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP 270
           L +  +   + L L+   L+    +L                 ++ +++++ N     LP
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNL---------------PPQITVLEITQNALI-SLP 96

Query: 271 SKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAG 330
                          + L YL                      +       + +P++ A 
Sbjct: 97  E------------LPASLEYL----------------DACDNRL-------STLPELPAS 121

Query: 331 II---LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387
           +    + N      +P   + L   + +N  NN L   +P      T+LE L + NN+ +
Sbjct: 122 LKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPE---LPTSLEVLSVRNNQLT 173

Query: 388 GRIPQQLVELTFLAFFNVSDNYLTGL 413
             +P+    L  L   +VS N L  L
Sbjct: 174 -FLPELPESLEAL---DVSTNLLESL 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 49/359 (13%), Positives = 96/359 (26%), Gaps = 67/359 (18%)

Query: 85  KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144
            +     L L   +   S +   +      + +L++        +P    +   L++L  
Sbjct: 57  LINQFSELQLNRLNL--SSLPDNLPP---QITVLEITQNAL-ISLPELPAS---LEYLDA 107

Query: 145 GFNNFSGDLLGSIGNLR-----------------SLEAIYMSKCNFSGQITSSLRNLTEL 187
             N  S  L     +L+                  LE I         Q+T      T L
Sbjct: 108 CDNRLS-TLPELPASLKHLDVDNNQLTMLPELPALLEYINADNN----QLTMLPELPTSL 162

Query: 188 VVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEE-- 245
            VL +  N                L    ++L AL++S NLL       V    + E   
Sbjct: 163 EVLSVRNNQLTF------------LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEI 210

Query: 246 ------------PRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD 293
                       P           I L DN  + ++         ++    A    +   
Sbjct: 211 FFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI-------RESLSQQTAQPDYHGPR 263

Query: 294 VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ 353
           +          T    L   +             ++ I  + +  + A   S    +   
Sbjct: 264 IYFSMSDGQQNTLHRPLADAVTAWFP--ENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD 321

Query: 354 VLNLHNN-NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
            ++  N    +  + + L  L+    L   +   +    +   +   L + N+    L 
Sbjct: 322 TVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 57/339 (16%), Positives = 107/339 (31%), Gaps = 97/339 (28%)

Query: 77  INSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNF 136
           I               NL       +  Q E+ ++      +   +     K    I   
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSI----DQIIANNSDI--KSVQGIQYL 64

Query: 137 TRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT--SSLRNLTELVVLDMAQ 194
             +  L+L  N  +   +  + NL++L  +++ +     +I   SSL++L +L  L +  
Sbjct: 65  PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEH 118

Query: 195 NSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD--QHLVLLPGNNEEPRTGCGF 252
           N   G  +I G      L  ++  L +L L +N +T       L                
Sbjct: 119 N---GISDING------LV-HLPQLESLYLGNNKITDITVLSRL---------------- 152

Query: 253 SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTM 312
           +KL  + L DN+ +               IV  + L  LQ++             YL   
Sbjct: 153 TKLDTLSLEDNQIS--------------DIVPLAGLTKLQNL-------------YL--- 182

Query: 313 NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 372
                  + N I D+                 +++ LK L VL L +        +   N
Sbjct: 183 -------SKNHISDL----------------RALAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 373 LTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
           L    ++  ++       P+ + +       NV  +   
Sbjct: 220 LVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 77/250 (30%)

Query: 176 QIT--SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLT--- 230
            I          E +  ++ + S    +              + +++ +  +++ +    
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVTQN----------ELNSIDQIIANNSDIKSVQ 59

Query: 231 GFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT-----GKLPSKSFLCWNAMKIVNA 285
           G                       +  + L+ N+ T       L +  +L  +  KI + 
Sbjct: 60  GIQY-----------------LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL 102

Query: 286 SELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPAS 345
           S L+ L+                     +K   + +N I DI                  
Sbjct: 103 SSLKDLK--------------------KLKSLSLEHNGISDI----------------NG 126

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405
           + +L  L+ L L NN +     + L  LT L++L L +N+ S  I   L  LT L    +
Sbjct: 127 LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYL 182

Query: 406 SDNYLTGLIP 415
           S N+++ L  
Sbjct: 183 SKNHISDLRA 192

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 51/318 (16%), Positives = 97/318 (30%), Gaps = 84/318 (26%)

Query: 105 QPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE 164
             +   + C+ + L         +VP  I   +  ++L L  NN       +  +L  LE
Sbjct: 53  SNQFSKVVCTRRGLS--------EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLE 102

Query: 165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNL 224
            + + + +       +   L  L  L++  N       +   +     +  +  L  L L
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDN------WLT-VIPSGAFE-YLSKLRELWL 154

Query: 225 SHNLLT-----GFD-----QHLVLLPGNN---EEPRTGCGFSKLRIIDLSDNRFTGKLPS 271
            +N +       F+       L L               G   L+ ++L        +P+
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213

Query: 272 KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGI 331
            + L            L  L+                          M+ N  P+I  G 
Sbjct: 214 LTPL----------VGLEELE--------------------------MSGNHFPEIRPG- 236

Query: 332 ILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 391
                        S   L  L+ L + N+ +     +    L +L  L+L++N  S  +P
Sbjct: 237 -------------SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282

Query: 392 QQLVE-LTFLAFFNVSDN 408
             L   L +L   ++  N
Sbjct: 283 HDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 48/297 (16%), Positives = 86/297 (28%), Gaps = 72/297 (24%)

Query: 88  HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFN 147
           +  +LNL  N+     IQ +       L++L L           +      L  L L  N
Sbjct: 76  NTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 148 NFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKV 207
             +    G+   L  L  +++         + +   +  L+ LD+ +       ++E  +
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----KLE-YI 187

Query: 208 HKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG 267
            +   +  + NL  LNL    +                         L  +++S N F  
Sbjct: 188 SEGAFE-GLFNLKYLNLGMCNIKDMP--------------NLTPLVGLEELEMSGNHFP- 231

Query: 268 KLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI 327
           ++   SF           S L+ L                           +  +++  I
Sbjct: 232 EIRPGSF--------HGLSSLKKL--------------------------WVMNSQVSLI 257

Query: 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 384
                            +   L  L  LNL +NNL          L  L  L L +N
Sbjct: 258 ERN--------------AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 34/231 (14%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
           ++  H+  L L  + +   I    +   L  L  L L  N    + I          L+ 
Sbjct: 96  RHLHHLEVLQLGRNSI-RQI-EVGAFNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRE 151

Query: 118 LDLRSCGFWGKVPHSI-GNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLEAIYMSKCNFSG 175
           L LR+      +P         L  L LG       +  G+   L +L+ + +  C    
Sbjct: 152 LWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC---- 206

Query: 176 QITS--SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233
            I    +L  L  L  L+M+ N          ++        + +L  L + ++ ++   
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGN------HFP-EIRPGSFH-GLSSLKKLWVMNSQVSLI- 257

Query: 234 QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVN 284
                      E     G + L  ++L+ N  +  LP   F     +  ++
Sbjct: 258 -----------ERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 41/186 (22%), Positives = 62/186 (33%), Gaps = 25/186 (13%)

Query: 79  SSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSI-GNFT 137
            S +   L  L  L L  N      I     N   SL  LDL        +         
Sbjct: 139 PSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSY 197
            L++L LG  N     + ++  L  LE + MS  +F      S   L+ L  L +  +  
Sbjct: 197 NLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ- 253

Query: 198 GGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRI 257
                +   + +   D  + +L  LNL+HN L+        LP +            L  
Sbjct: 254 -----VS-LIERNAFD-GLASLVELNLAHNNLSS-------LPHD-----LFTPLRYLVE 294

Query: 258 IDLSDN 263
           + L  N
Sbjct: 295 LHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 64/202 (31%)

Query: 215 NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF 274
           ++ +L  L L  N +               E     G + L  ++L DN  T  +PS +F
Sbjct: 97  HLHHLEVLQLGRNSIRQI------------EVGAFNGLASLNTLELFDNWLT-VIPSGAF 143

Query: 275 LCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILS 334
                      S+LR L                           +  N I  I +     
Sbjct: 144 --------EYLSKLREL--------------------------WLRNNPIESIPSYA--- 166

Query: 335 NKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIPQQ 393
              F+         +  L  L+L       +I       L NL+ L+L        +P  
Sbjct: 167 ---FNR--------VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-N 213

Query: 394 LVELTFLAFFNVSDNYLTGLIP 415
           L  L  L    +S N+   + P
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS-SEIQPEI-INLSCSL 115
           +    + +L L +     SI  S +  ++  L  L+L   +      I       L  +L
Sbjct: 144 EYLSKLRELWLRN-NPIESI-PSYAFNRVPSLMRLDL--GELKKLEYISEGAFEGLF-NL 198

Query: 116 KLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG 175
           K L+L  C    K   ++     L+ L +  N+F     GS   L SL+ +++     S 
Sbjct: 199 KYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 176 QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN 227
              ++   L  LV L++A N+      +   +   L  P ++ L  L+L HN
Sbjct: 257 IERNAFDGLASLVELNLAHNN------LS-SLPHDLFTP-LRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTF 399
            +P  I      + LNL  NN+Q        +L +LE L L  N    +I       L  
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 400 LAFFNVSDNYLTGL 413
           L    + DN+LT +
Sbjct: 125 LNTLELFDNWLTVI 138

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 46/327 (14%), Positives = 92/327 (28%), Gaps = 93/327 (28%)

Query: 76  SINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGN 135
           +IN       L +   +    ++   +  Q ++      +  L     G        +  
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDG----ITTLSAFGTGV--TTIEGVQY 61

Query: 136 FTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT--SSLRNLTELVVLDMA 193
              L  L L  N  +   L  + NL  +  + +S       +   S++  L  +  LD+ 
Sbjct: 62  LNNLIGLELKDNQITD--LAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLT 115

Query: 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFS 253
                    +            + NL  L L  N +T        +           G +
Sbjct: 116 STQITDVTPLA----------GLSNLQVLYLDLNQITN-------ISPLA-------GLT 151

Query: 254 KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMN 313
            L+ + + +                  ++ + + L  L                      
Sbjct: 152 NLQYLSIGNA-----------------QVSDLTPLANLS--------------------K 174

Query: 314 IKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 373
           +       NKI DI                + +++L  L  ++L NN +    P  L N 
Sbjct: 175 LTTLKADDNKISDI----------------SPLASLPNLIEVHLKNNQISDVSP--LANT 216

Query: 374 TNLESLDLSNNKFSGRIPQQLVELTFL 400
           +NL  + L+N   + +       L   
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 39/237 (16%), Positives = 76/237 (32%), Gaps = 59/237 (24%)

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVL 238
                L   + +   +++   T+             ++  +  L+     +T     +  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQA----------DLDGITTLSAFGTGVT----TIEG 58

Query: 239 LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298
           +             + L  ++L DN+ T               +     L  + ++    
Sbjct: 59  V----------QYLNNLIGLELKDNQIT--------------DLAPLKNLTKITELELSG 94

Query: 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLH 358
             L   +    L  +IK   +   +I D+                  ++ L  LQVL L 
Sbjct: 95  NPLKNVSAIAGLQ-SIKTLDLTSTQITDV----------------TPLAGLSNLQVLYLD 137

Query: 359 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
            N +  +I   L  LTNL+ L + N + S   P  L  L+ L      DN ++ + P
Sbjct: 138 LNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 54/281 (19%), Positives = 89/281 (31%), Gaps = 72/281 (25%)

Query: 129 VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV 188
           VP  I      Q ++L  N  S     S    R+L  +++     +    ++   L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 189 VLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT 248
            LD++ N+     ++   V        +  L+ L+L    L                P  
Sbjct: 84  QLDLSDNA-----QLR-SVDPATFH-GLGRLHTLHLDRCGLQELG------------PGL 124

Query: 249 GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDY 308
             G + L+ + L DN     LP  +F         +   L +L                 
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTF--------RDLGNLTHL----------------- 158

Query: 309 LLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS 368
                     +  N+I  +         +F G        L  L  L LH N +    P 
Sbjct: 159 ---------FLHGNRISSVPER------AFRG--------LHSLDRLLLHQNRVAHVHPH 195

Query: 369 CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLAFFNVSDN 408
              +L  L +L L  N  S  +P + L  L  L +  ++DN
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 43/253 (16%), Positives = 72/253 (28%), Gaps = 68/253 (26%)

Query: 161 RSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220
            + + I++     S    +S R    L +L +  N       I+           +  L 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---RIDAAAFT-----GLALLE 83

Query: 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAM 280
            L+LS N        L  +      P T  G  +L  + L       +L    F      
Sbjct: 84  QLDLSDN------AQLRSVD-----PATFHGLGRLHTLHLDRCGLQ-ELGPGLF------ 125

Query: 281 KIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDG 340
                + L+YL                           +  N +  +       + +F  
Sbjct: 126 --RGLAALQYLY--------------------------LQDNALQAL------PDDTFRD 151

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
                   L  L  L LH N +          L +L+ L L  N+ +   P    +L  L
Sbjct: 152 --------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 401 AFFNVSDNYLTGL 413
               +  N L+ L
Sbjct: 204 MTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 31/210 (14%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKL 117
           +   ++  L L  + L  +   +++   L  LE L+L+ N      + P   +    L  
Sbjct: 53  RACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNA-QLRSVDPATFHGLGRLHT 109

Query: 118 LDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI 177
           L L  CG     P        LQ+LYL  N        +  +L +L  +++   N   +I
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-N---RI 165

Query: 178 TS----SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233
           +S    + R L  L  L + QN       +   VH      ++  L  L L  N L+   
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQN------RVA-HVHPHAFR-DLGRLMTLYLFANNLSALP 217

Query: 234 QHLVLLPGNNEEPRTGCGFSKLRIIDLSDN 263
              +                 L+ + L+DN
Sbjct: 218 TEALA------------PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 334 SNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ 393
             +    A+P  I      Q + LH N +     +      NL  L L +N  +      
Sbjct: 19  PQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 394 LVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTS 427
              L  L   ++SDN     +       TF    
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPA----TFHGLG 105

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 32/191 (16%)

Query: 89  LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN 148
            + + L  N    S +         +L +L L S         +      L+ L L  N 
Sbjct: 34  SQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 149 FSGDL-LGSIGNLRSLEAIYMSKCNFSGQITS----SLRNLTELVVLDMAQNSYGGTMEI 203
               +   +   L  L  +++ +C     +        R L  L  L +  N+      +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRC----GLQELGPGLFRGLAALQYLYLQDNA------L 141

Query: 204 EGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDN 263
           +  +       ++ NL  L L  N ++                R   G   L  + L  N
Sbjct: 142 Q-ALPDDTFR-DLGNLTHLFLHGNRISSV------------PERAFRGLHSLDRLLLHQN 187

Query: 264 RFTGKLPSKSF 274
           R    +   +F
Sbjct: 188 RVA-HVHPHAF 197

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 32/201 (15%)

Query: 79  SSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSI-GNFT 137
            ++S     +L  L L  N    + I          L+ LDL        V  +      
Sbjct: 48  PAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS----SLRNLTELVVLDMA 193
           RL  L+L          G    L +L+ +Y+        + +    + R+L  L  L + 
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN----ALQALPDDTFRDLGNLTHLFLH 161

Query: 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFS 253
            N       I   V +      + +L+ L L  N +                P       
Sbjct: 162 GN------RIS-SVPERAFR-GLHSLDRLLLHQNRVAHV------------HPHAFRDLG 201

Query: 254 KLRIIDLSDNRFTGKLPSKSF 274
           +L  + L  N  +  LP+++ 
Sbjct: 202 RLMTLYLFANNLS-ALPTEAL 221

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 57/390 (14%), Positives = 111/390 (28%), Gaps = 88/390 (22%)

Query: 62  HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC--SLKLLD 119
            +  L+  +S    SI   + + KL  L  L    N+  +       ++LS   +L  L 
Sbjct: 43  TLTSLDCHNS----SITDMTGIEKLTGLTKLICTSNNITT-------LDLSQNTNLTYLA 91

Query: 120 LRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS 179
             S          +   T+L +L    N  +      +     L  +  ++      +T 
Sbjct: 92  CDSNKLTN---LDVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARN----TLTE 141

Query: 180 -SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLD-----------PNMQNLNALNLSHN 227
             + + T+L  LD   N     +++  +     LD              + LN LN   N
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN 201

Query: 228 LLTGFD-------QHLVL-------LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273
            +T  D         L         +             ++L   D S N  T +L   +
Sbjct: 202 NITKLDLNQNIQLTFLDCSSNKLTEIDVTP--------LTQLTYFDCSVNPLT-ELDVST 252

Query: 274 F-------LCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD 326
                        +  ++ +    L       G   +   D      +         I +
Sbjct: 253 LSKLTTLHCIQTDLLEIDLTHNTQLIY-FQAEGCRKIKELDVTHNTQLYLLDCQAAGITE 311

Query: 327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386
           +                  +S    L  L L+N  L   +   + + T L+SL   N   
Sbjct: 312 L-----------------DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 387 SGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416
                  + ++  L     ++     +  +
Sbjct: 352 QD-FS-SVGKIPALNNNFEAEGQTITMPKE 379

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 53/304 (17%), Positives = 83/304 (27%), Gaps = 80/304 (26%)

Query: 115 LKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS 174
                  +         S      L  L    ++ +   +  I  L  L  +  +     
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSN--- 74

Query: 175 GQITS-SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233
             IT+  L   T L  L    N               L    +  L  LN   N LT  D
Sbjct: 75  -NITTLDLSQNTNLTYLACDSNKLTN-----------LDVTPLTKLTYLNCDTNKLTKLD 122

Query: 234 QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT----GKLPSKSFLCWNAMKIVNASELR 289
                                L  ++ + N  T          + L  +  K +   ++ 
Sbjct: 123 VS---------------QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT 167

Query: 290 YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNL 349
                                   +     ++NKI ++                  +S  
Sbjct: 168 PQT--------------------QLTTLDCSFNKITEL-----------------DVSQN 190

Query: 350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNY 409
           K L  LN   NN+   +   L     L  LD S+NK +  I   +  LT L +F+ S N 
Sbjct: 191 KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNP 244

Query: 410 LTGL 413
           LT L
Sbjct: 245 LTEL 248

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 324 IPDI-LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLS 382
            PD   A  + +          S   L  L  L+ HN+++     + +  LT L  L  +
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICT 72

Query: 383 NNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
           +N  +     Q   LT+L       N LT L
Sbjct: 73  SNNITTLDLSQNTNLTYL---ACDSNKLTNL 100

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 54/390 (13%), Positives = 106/390 (27%), Gaps = 77/390 (19%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            LN   + L     +   + +   L +LN A N           I++S + +L +L    
Sbjct: 110 YLNCDTNKL-----TKLDVSQNPLLTYLNCARNTLTE-------IDVSHNTQLTELDCHL 157

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS-SLRN 183
                   +   T+L  L   FN  +      +   + L  +          IT   L  
Sbjct: 158 NKKITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTN----NITKLDLNQ 210

Query: 184 LTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNN 243
             +L  LD + N     +++            +  L   + S N LT  D          
Sbjct: 211 NIQLTFLDCSSNKLT-EIDVT----------PLTQLTYFDCSVNPLTELDV--------- 250

Query: 244 EEPRTGCGFSKLRIIDLSDNRFT----GKLPSKSFLCWNAMKIVNASELRYLQD--VLSP 297
                    SKL  +                   +      + +   ++ +     +L  
Sbjct: 251 ------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304

Query: 298 SGKLLMTTYDYLLTMNIKGRMMAYNKIPDI-------LAGIILSN---KSFDGAIPASIS 347
               + T  D      +    +   ++ ++       L  +   N   + F      S+ 
Sbjct: 305 QAAGI-TELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFS-----SVG 358

Query: 348 NLKGLQVLNLHNNNLQGHIPSCLGNLTNL------ESLDLSNNKFSGRIPQQLVELTFLA 401
            +  L             +P       +L      + LD   N  +  I      +   A
Sbjct: 359 KIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQA 415

Query: 402 FFNVSDNYLTGLIPQGKQFATFDNTSFDGN 431
              ++   L+   P      T +N +  G 
Sbjct: 416 TNTITWENLSTDNPAVTYTFTSENGAIVGT 445

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 53/289 (18%), Positives = 90/289 (31%), Gaps = 66/289 (22%)

Query: 129 VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV 188
           VP  I   T  + L L  N      + S  +LR LE + +S+ +       +   L  L 
Sbjct: 58  VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115

Query: 189 VLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT 248
            L++  N       +   +        +  L  L L +N +                   
Sbjct: 116 TLELFDN------RLT-TIPNGAFV-YLSKLKELWLRNNPIESI------------PSYA 155

Query: 249 GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDY 308
                 LR +DL + +    +   +F           S LRYL                 
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAF--------EGLSNLRYLN---------------- 191

Query: 309 LLTMNIKGRMMAYNKIPDI--------LAGIILSNKSFDGAIPASISNLKGLQVLNLHNN 360
                     +A   + +I        L  + LS        P S   L  LQ L +  +
Sbjct: 192 ----------LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 361 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE-LTFLAFFNVSDN 408
            +Q    +   NL +L  ++L++N  +  +P  L   L  L   ++  N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 64/200 (32%)

Query: 215 NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF 274
           ++++L  L LS N +               E     G + L  ++L DNR T  +P+ +F
Sbjct: 86  HLRHLEILQLSRNHIRTI------------EIGAFNGLANLNTLELFDNRLT-TIPNGAF 132

Query: 275 LCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILS 334
                   V  S+L+ L                           +  N I  I +     
Sbjct: 133 --------VYLSKLKEL--------------------------WLRNNPIESIPSY---- 154

Query: 335 NKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIPQQ 393
             +F+         +  L+ L+L       +I       L+NL  L+L+       IP  
Sbjct: 155 --AFNR--------IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202

Query: 394 LVELTFLAFFNVSDNYLTGL 413
           L  L  L   ++S N+L+ +
Sbjct: 203 LTPLIKLDELDLSGNHLSAI 222

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
            +P  IS     ++LNLH N +Q    +   +L +LE L LS N            L  L
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 401 AFFNVSDNYLTGL 413
               + DN LT +
Sbjct: 115 NTLELFDNRLTTI 127

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125
           L+L        I S  +   L +L +LNLA+ +       P +  L   L  LDL     
Sbjct: 165 LDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNLRE---IPNLTPLI-KLDELDLSGNHL 219

Query: 126 WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLT 185
               P S      LQ L++  +        +  NL+SL  I ++  N +         L 
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279

Query: 186 ELVVLDMAQN 195
            L  + +  N
Sbjct: 280 HLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 33/71 (46%)

Query: 343 PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
             S  +L+ L++L L  N+++         L NL +L+L +N+ +       V L+ L  
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140

Query: 403 FNVSDNYLTGL 413
             + +N +  +
Sbjct: 141 LWLRNNPIESI 151

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS-SEIQPEI-INLSCSLKLLDLRSC 123
           L L +     SI  S +  ++  L  L+L   +    S I       LS +L+ L+L  C
Sbjct: 141 LWLRN-NPIESI-PSYAFNRIPSLRRLDL--GELKRLSYISEGAFEGLS-NLRYLNLAMC 195

Query: 124 GFWGKVPHSIGNF---TRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS 180
                    I N     +L  L L  N+ S    GS   L  L+ ++M +        ++
Sbjct: 196 NL-----REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN 227
             NL  LV +++A N+      +   +   L  P + +L  ++L HN
Sbjct: 251 FDNLQSLVEINLAHNN------LT-LLPHDLFTP-LHHLERIHLHHN 289

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 6e-11
 Identities = 64/386 (16%), Positives = 111/386 (28%), Gaps = 83/386 (21%)

Query: 5   CHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVV 64
            HD      +  +E+ +S  F                 +       W          HV 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
             +L  + L   +   +        +     +   +  E           L   +L S  
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL-SVE 359

Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL 184
               +   + +   LQ L          LL  I  +R+L+ +   K         +L+  
Sbjct: 360 KSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEK--------ETLQYF 408

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD--QHLVLLPGN 242
           + L  +D  + +Y   +  +  +   +L     ++  L+L+H  LT     + L      
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL------ 462

Query: 243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLL 302
                       +  +DLS NR    LP               + LR L+ VL       
Sbjct: 463 ----------LLVTHLDLSHNRLR-ALPP------------ALAALRCLE-VLQ------ 492

Query: 303 MTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNL 362
                            + N +           ++ DG     ++NL  LQ L L NN L
Sbjct: 493 ----------------ASDNAL-----------ENVDG-----VANLPRLQELLLCNNRL 520

Query: 363 QGH-IPSCLGNLTNLESLDLSNNKFS 387
           Q       L +   L  L+L  N   
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 345 SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN 404
            +  L  +  L+L +N L+  +P  L  L  LE L  S+N     +   +  L  L    
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 405 VSDNYLTGL 413
           + +N L   
Sbjct: 515 LCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 54/370 (14%), Positives = 100/370 (27%), Gaps = 84/370 (22%)

Query: 45  NVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEI 104
           +V       V     T  ++      S  + + +  +    +   +    +LND      
Sbjct: 258 SVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT 317

Query: 105 QPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFN--NFSGDLLGSIGNLRS 162
              I   S S K   L                 +L    L           L S   L+ 
Sbjct: 318 FRVIWTGSDSQKECVL-LKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQE 376

Query: 163 LEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNAL 222
           LE            I   +R L  L+                              L A+
Sbjct: 377 LEPENKWCLL---TIILLMRALDPLLYEK-------------------ETLQYFSTLKAV 414

Query: 223 NLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKI 282
           +          +   L     E       ++ +R++ L+    T               +
Sbjct: 415 DPMRAAYLDDLRSKFL----LENSVLKMEYADVRVLHLAHKDLT--------------VL 456

Query: 283 VNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAI 342
            +  +L  +  +              L          ++N++  +               
Sbjct: 457 CHLEQLLLVTHL-------------DL----------SHNRLRAL--------------- 478

Query: 343 PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLA 401
           P +++ L+ L+VL   +N L+ ++   + NL  L+ L L NN+       Q LV    L 
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 402 FFNVSDNYLT 411
             N+  N L 
Sbjct: 537 LLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 46/230 (20%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLE--------WLNLALNDFNSSEIQPEIINLSCSLK 116
           +  LS        +   S  +L  LE         + L +   +    + E +    +LK
Sbjct: 353 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 117 LLD---------LRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY 167
            +D         LRS     +       +  ++ L+L   + +  +L  +  L  +  + 
Sbjct: 413 AVDPMRAAYLDDLRSKFLL-ENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLD 469

Query: 168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDP--NMQNLNALNLS 225
           +S       +  +L  L  L VL  + N       +E       +D   N+  L  L L 
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDN------ALEN------VDGVANLPRLQELLLC 516

Query: 226 HNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL 275
           +N L        L               +L +++L  N    +   +  L
Sbjct: 517 NNRLQQSAAIQPL-----------VSCPRLVLLNLQGNSLCQEEGIQERL 555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 56/338 (16%), Positives = 107/338 (31%), Gaps = 93/338 (27%)

Query: 76  SINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGN 135
            I    S          NL       +  Q E+ ++      +   +     K    I  
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSI----DQIIANNSDI--KSVQGIQY 66

Query: 136 FTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT--SSLRNLTELVVLDMA 193
              +  L+L  N  +   +  + NL++L  +++ +     ++   SSL++L +L  L + 
Sbjct: 67  LPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLE 120

Query: 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFS 253
            N   G  +I G      L  ++  L +L L +N +T     L  L              
Sbjct: 121 HN---GISDING------LV-HLPQLESLYLGNNKITDIT-VLSRLT------------- 156

Query: 254 KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMN 313
           KL  + L DN+ +               IV  + L  LQ++                   
Sbjct: 157 KLDTLSLEDNQIS--------------DIVPLAGLTKLQNL------------------- 183

Query: 314 IKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 373
                ++ N I D+                 +++ LK L VL L +        +   NL
Sbjct: 184 ----YLSKNHISDL----------------RALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 374 TNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
               ++  ++       P+ + +       NV  +   
Sbjct: 224 VVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 67/241 (27%)

Query: 179 SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLT---GFDQH 235
            S     E +  ++ + S    +              + +++ +  +++ +    G    
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN----------ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 236 LVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVL 295
                              +  + L+ N+ T               I   + L+ L  + 
Sbjct: 66  ---------------YLPNVTKLFLNGNKLT--------------DIKPLANLKNLGWLF 96

Query: 296 SPSGKLLMTTYDYLLTM-NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQV 354
               K+       L  +  +K   + +N I DI                  + +L  L+ 
Sbjct: 97  LDENKV--KDLSSLKDLKKLKSLSLEHNGISDI----------------NGLVHLPQLES 138

Query: 355 LNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI 414
           L L NN +     + L  LT L++L L +N+ S  I   L  LT L    +S N+++ L 
Sbjct: 139 LYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISDLR 194

Query: 415 P 415
            
Sbjct: 195 A 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 14/98 (14%)

Query: 322 NKIPDI--------LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 373
             I  I             L  KS   A+    + L  +  +  +N++++  +   +  L
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYL 67

Query: 374 TNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411
            N+  L L+ NK +  I   L  L  L +  + +N + 
Sbjct: 68  PNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK 103

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 46/299 (15%), Positives = 90/299 (30%), Gaps = 56/299 (18%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
            L+ ++K LDL +          +     LQ L L  N  +     S  +L SLE + +S
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 170 KCNFSGQITS----SLRNLTELVVLDMAQNSY-----GGTMEIEGKVHKWLLDPNMQ--- 217
                  +++      + L+ L  L++  N Y             K+    +        
Sbjct: 109 YN----YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 218 ----------NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG 267
                      L  L +  + L  +            EP++      +  + L   +   
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSY------------EPKSLKSIQNVSHLILHMKQHI- 211

Query: 268 KLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI 327
            L        +    V   ELR          +L     + L+                 
Sbjct: 212 LLLEIFV---DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT------------- 255

Query: 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386
              + ++++S    +   ++ + GL  L    N L+         LT+L+ + L  N +
Sbjct: 256 FRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 34/227 (14%), Positives = 66/227 (29%), Gaps = 54/227 (23%)

Query: 215 NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF 274
              NL AL L+ N +               E  +      L  +DLS N  +  L S  F
Sbjct: 74  RCVNLQALVLTSNGINTI------------EEDSFSSLGSLEHLDLSYNYLS-NLSSSWF 120

Query: 275 LCWNAMKIVNASELRYLQ------DVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDIL 328
                      S L +L         L  +                      ++ +  + 
Sbjct: 121 --------KPLSSLTFLNLLGNPYKTLGETS--------------------LFSHLTKLQ 152

Query: 329 AGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 388
              + +  +F        + L  L+ L +  ++LQ + P  L ++ N+  L L   +   
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI- 211

Query: 389 RIPQQLVE-LTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGL 434
            + +  V+  + +    + D  L         F+       +     
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTF-----HFSELSTGETNSLIKK 253

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS---GR 389
            S+ S + +IP+ ++  + ++ L+L NN +     S L    NL++L L++N  +     
Sbjct: 38  GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 390 IPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTS 427
               L  L  L   ++S NYL+  +        F   S
Sbjct: 95  SFSSLGSLEHL---DLSYNYLS-NLSSS----WFKPLS 124

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 37/302 (12%), Positives = 79/302 (26%), Gaps = 89/302 (29%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
           N  C      L S      +P  +     ++ L L  N  +      +    +L+A+ ++
Sbjct: 33  NGICKGSSGSLNS------IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 84

Query: 170 KCNFSGQITS----SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLS 225
                  I +    S  +L  L  LD++ N       +   +        + +L  LNL 
Sbjct: 85  SN----GINTIEEDSFSSLGSLEHLDLSYN------YLS-NLSSSWFK-PLSSLTFLNLL 132

Query: 226 HNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNA 285
            N      +  +               +KL+I+ + +     K+  K F           
Sbjct: 133 GNPYKTLGETSLF-----------SHLTKLQILRVGNMDTFTKIQRKDF--------AGL 173

Query: 286 SELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPAS 345
           + L  L+                          +  + +            S        
Sbjct: 174 TFLEELE--------------------------IDASDLQSYEPK------SLK------ 195

Query: 346 ISNLKGLQVLNLHNNNLQ---GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
             +++ +  L LH                ++     L+L +         +L      + 
Sbjct: 196 --SIQNVSHLILHMKQHILLLEIFVDVTSSVE---CLELRDTDLDTFHFSELSTGETNSL 250

Query: 403 FN 404
             
Sbjct: 251 IK 252

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 48/360 (13%), Positives = 93/360 (25%), Gaps = 34/360 (9%)

Query: 85  KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144
            L  L  L L+ N      +   +   +  L+ LD+        +         L+ L L
Sbjct: 74  FLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDL 128

Query: 145 GFNNF-SGDLLGSIGNLRSLEAIYMS---------KCNFSGQITSSLRNLTELVV--LDM 192
            FN+F    +    GNL  L  + +S                ++  L +L    +   + 
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188

Query: 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGF 252
                  T  +    H   L     N++   L H  L+    +                 
Sbjct: 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 253 SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTM 312
             L  + L     T K   K F  +    +     L      ++        TY      
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPV---EYLNIYNLTITERIDREEFTYSETALK 305

Query: 313 NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 372
           ++    +           +      +             + +  L  ++       C  +
Sbjct: 306 SLMIEHVKNQVFLFSKEAL------YSV--------FAEMNIKMLSISDTPFIHMVCPPS 351

Query: 373 LTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNS 432
            ++   L+ + N F+  + Q    L  L    +  N L              +      S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 49/345 (14%), Positives = 109/345 (31%), Gaps = 63/345 (18%)

Query: 68  LSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG 127
           + H     S+  + S+  L HL+  N+ LND N   +   +  L+    LL++       
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 128 KVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTEL 187
               S+  F       + + N     +    +                  T S   L  L
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF--------------TYSETALKSL 307

Query: 188 VVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR 247
           ++  +    +   +  +  ++          +N   LS +         ++ P       
Sbjct: 308 MIEHVKNQVF---LFSKEALYSVFA-----EMNIKMLSISDTPFI---HMVCPP------ 350

Query: 248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYD 307
                S    ++ + N FT     +       ++ +       L++    +      +  
Sbjct: 351 ---SPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSL 405

Query: 308 YLLTMNIK----GRMMAYNKIPDILAGIILSN-----KSFDG----------------AI 342
             L +++               + +  + LS+       F                  +I
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI 465

Query: 343 PASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKF 386
           P  +++L+ LQ LN+ +N L+  +P      LT+L+ + L +N +
Sbjct: 466 PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 58/386 (15%), Positives = 117/386 (30%), Gaps = 61/386 (15%)

Query: 65  KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124
            L++SH+ L      + S   +  L  L+L+ NDF+   +  E  NL+  L  L L +  
Sbjct: 104 YLDVSHNRL-----QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAK 157

Query: 125 FWGKVPHSIGNFTRLQ--FLYLGFNNFSGDLLGSI--GNLRSLEAIYMSKCNFSGQITSS 180
           F  ++         L    L L   +  G    S+   N   L  ++     FS Q+  S
Sbjct: 158 F-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

Query: 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240
           +  L  L + ++  N       +        L    +    LN++   +    +  V L 
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLM------TFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF-LCWNAMKIVNASELRYLQDVLSPSG 299
                         +  +++ +   T ++  + F     A+K +    ++    + S   
Sbjct: 271 QFFWP-------RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 300 ---KLLMTTYDYL-------LTMNIKGRM-------MAYNKIPDILAGII---------- 332
                       L       + M                N   D +              
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQ----GHIPSCLGNLTNLESLDLSNNKFSG 388
           L                K +  L   + +L                ++  L+LS+N  +G
Sbjct: 384 LQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442

Query: 389 RIPQQLVE-LTFLAFFNVSDNYLTGL 413
            + + L   +  L   ++ +N +  +
Sbjct: 443 SVFRCLPPKVKVL---DLHNNRIMSI 465

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 321 YNKIPDI--------LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 372
                +         L  + +  K        ++S L  L +L++ ++     I + +  
Sbjct: 75  NIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 373 LTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415
           L  + S+DLS N     I   L  L  L   N+  + +     
Sbjct: 135 LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 27/185 (14%), Positives = 63/185 (34%), Gaps = 33/185 (17%)

Query: 85  KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144
           ++  L ++ LA  +         I     ++K L + +        + I   + L+ L +
Sbjct: 42  QMNSLTYITLANINVTDLT---GIEYAH-NIKDLTINNIHA--TNYNPISGLSNLERLRI 95

Query: 145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIE 204
              + + D + ++  L SL  + +S       I + +  L ++  +D++ N       I 
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-----AIT 150

Query: 205 GKVHKWLLDP--NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSD 262
                  + P   +  L +LN+  + +  +   +               F KL  +    
Sbjct: 151 D------IMPLKTLPELKSLNIQFDGVHDYR-GIE-------------DFPKLNQLYAFS 190

Query: 263 NRFTG 267
               G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405
           I     ++ L ++N +      + +  L+NLE L +     +      L  LT L   ++
Sbjct: 62  IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 406 SDNYLTGLIPQG 417
           S +     I   
Sbjct: 120 SHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 31/254 (12%), Positives = 70/254 (27%), Gaps = 79/254 (31%)

Query: 135 NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQ 194
            F       LG  + + ++  +   + SL  I ++  N +    + +     +  L +  
Sbjct: 21  TFKAYLNGLLG-QSSTANI--TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINN 75

Query: 195 NSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSK 254
                   I            + NL  L +    +T            +++     G + 
Sbjct: 76  IHATNYNPIS----------GLSNLERLRIMGKDVT------------SDKIPNLSGLTS 113

Query: 255 LRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNI 314
           L ++D+S +     + +         KI    ++  +                  L+ N 
Sbjct: 114 LTLLDISHSAHDDSILT---------KINTLPKVNSID-----------------LSYN- 146

Query: 315 KGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT 374
                    I DI                  +  L  L+ LN+  + +  +    + +  
Sbjct: 147 -------GAITDI----------------MPLKTLPELKSLNIQFDGVHDYRG--IEDFP 181

Query: 375 NLESLDLSNNKFSG 388
            L  L   +    G
Sbjct: 182 KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 392
           +S+ + D +I   I+ L  +  ++L  N     I   L  L  L+SL++  +        
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG- 176

Query: 393 QLVELTFLAFFNVSDNYLTGL 413
            + +   L         + G 
Sbjct: 177 -IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 345 SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN 404
           + + +  L  + L N N+   +   +    N++ L ++N   +   P  +  L+ L    
Sbjct: 39  TEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLR 94

Query: 405 VSDNYLTGLIP 415
           +    +T    
Sbjct: 95  IMGKDVTSDKI 105

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 45/290 (15%), Positives = 84/290 (28%), Gaps = 76/290 (26%)

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
            CS ++   +      ++P  +        L            G+      LE I +S+ 
Sbjct: 8   HCSNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 64

Query: 172 NFSGQIT----SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN 227
           +    I     S+L  L E+ +       Y     I  +  +     N+ NL  L +S+ 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLLY-----INPEAFQ-----NLPNLQYLLISNT 114

Query: 228 LLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF-----------LC 276
            +                        +  ++D+ DN     +   SF           L 
Sbjct: 115 GIKHL------------PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 277 WNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNK 336
            N ++ ++ S     Q                L  +     +   N + ++       N 
Sbjct: 163 KNGIQEIHNSAFNGTQ----------------LDEL----NLSDNNNLEEL------PND 196

Query: 337 SFDGAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 385
            F G          G  +L++    +   +PS  L NL  L +    N K
Sbjct: 197 VFHG--------ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 52/297 (17%), Positives = 81/297 (27%), Gaps = 100/297 (33%)

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
             S   ++         +P  +        L+L  N      L ++     L  + + + 
Sbjct: 9   VASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 172 NFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTG 231
                       LT+L V                          +  L  L+LSHN L  
Sbjct: 66  E-----------LTKLQVDG-----------------------TLPVLGTLDLSHNQLQS 91

Query: 232 FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL 291
                         P  G     L ++D+S NR T  LP  +             EL+ L
Sbjct: 92  L-------------PLLGQTLPALTVLDVSFNRLT-SLPLGAL--------RGLGELQEL 129

Query: 292 QDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG 351
                                      +  N++  +  G+                    
Sbjct: 130 Y--------------------------LKGNELKTLPPGL------LTP--------TPK 149

Query: 352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN 408
           L+ L+L NNNL       L  L NL++L L  N     IP+       L F  +  N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP----QQLVE 396
           ++P     L  L VL++  N L       L  L  L+ L L  N+    +P        +
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149

Query: 397 LTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
           L  L   ++++N LT L P G      + 
Sbjct: 150 LEKL---SLANNNLTEL-PAG----LLNG 170

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 14/85 (16%)

Query: 347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP----QQLVELTFLAF 402
             L  L  L+L +N LQ  +P     L  L  LD+S N+ +  +P    + L EL  L  
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL-- 129

Query: 403 FNVSDNYLTGLIPQGKQFATFDNTS 427
             +  N L  L P G        T 
Sbjct: 130 -YLKGNELKTL-PPG----LLTPTP 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP- 391
              ++   A+P  +   K   +L+L  N L     + L   T L  L+L   + + ++  
Sbjct: 17  CDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV 72

Query: 392 -QQLVELTFLAFFNVSDNYLTGL 413
              L  L  L   ++S N L  L
Sbjct: 73  DGTLPVLGTL---DLSHNQLQSL 92

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 42/229 (18%), Positives = 75/229 (32%), Gaps = 35/229 (15%)

Query: 59  NTGHVVKLNLSHSCL--FGSINSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSC 113
           +   +  L L    +      +    +     L  L L  N        E+ P +++ S 
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256

Query: 114 SLKLLDLRSCGF----WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL-----RSLE 164
            L+ L +  CG      G +   +     L+ L L  N    +    +          LE
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 165 AIYMSKCNFSGQ----ITSSLRNLTELVVLDMAQNSYG--GTMEIEGKVHKWLLDPNMQN 218
           ++++  C+F+       +S L     L+ L ++ N     G  E+     + L  P    
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL----CQGLGQPG-SV 371

Query: 219 LNALNLSHNLLTGFD-QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT 266
           L  L L+   ++      L      N           LR +DLS+N   
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLAN---------HSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 52/338 (15%), Positives = 104/338 (30%), Gaps = 84/338 (24%)

Query: 89  LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF----WGKVPHSIGNFTRLQFLYL 144
           ++ L++   + + +    E++ L    +++ L  CG        +  ++     L  L L
Sbjct: 5   IQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 145 GFNNFSGDLLGSIGNL-----RSLEAIYMSKCNFSGQ----ITSSLRNLTELVVLDMAQN 195
             N      +  +          ++ + +  C  +G     ++S+LR L  L  L ++ N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 196 SYG--GTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD-QHLVLLPGNNEEPRTGCGF 252
             G  G   +       LLDP    L  L L +  L+    + L  +             
Sbjct: 124 LLGDAGLQLLCEG----LLDPQC-RLEKLQLEYCSLSAASCEPLASVLRAK--------- 169

Query: 253 SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTM 312
              + + +S+N                    N + +R L   L  S              
Sbjct: 170 PDFKELTVSNNDI------------------NEAGVRVLCQGLKDS------------PC 199

Query: 313 NIKGRMMAYNKIPD----ILAGIILSNKSF------------DGAI---PASISNLKGLQ 353
            ++   +    +       L GI+ S  S              G     P  +     L+
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 354 VLNLHNNNLQ----GHIPSCLGNLTNLESLDLSNNKFS 387
            L +    +     G +   L    +L+ L L+ N+  
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 65/366 (17%), Positives = 111/366 (30%), Gaps = 80/366 (21%)

Query: 62  HVVKLNLSHSCL--FGSINSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLK 116
               + L    L      + SS+L     L  LNL  N+        +   +   SC ++
Sbjct: 29  QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88

Query: 117 LLDLRSCGF----WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR-----SLEAIY 167
            L L++C       G +  ++     LQ L+L  N      L  +          LE + 
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 168 MSKCNFSGQ----ITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWL---LDPNMQNLN 220
           +  C+ S      + S LR   +   L ++ N       I     + L   L  +   L 
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNND------INEAGVRVLCQGLKDSPCQLE 202

Query: 221 ALNLSHNLLTGFD-QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG----------KL 269
           AL L    +T  + + L  +  +          + LR + L  N+               
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASK---------ASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 270 PSKSF----LCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIP 325
           PS       +    +    A     L  VL     L                 +A N++ 
Sbjct: 254 PSSRLRTLWIWECGI---TAKGCGDLCRVLRAKESL--KELS-----------LAGNELG 297

Query: 326 DILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDL 381
           D  A ++             +     L+ L + + +       H  S L     L  L +
Sbjct: 298 DEGARLLCE---------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348

Query: 382 SNNKFS 387
           SNN+  
Sbjct: 349 SNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 68/360 (18%), Positives = 113/360 (31%), Gaps = 82/360 (22%)

Query: 65  KLNLSHSCL--FGSINSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLKLLD 119
           KL L +  L        +S L      + L ++ ND N +    +   + +  C L+ L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 120 LRSCGF----WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGN-----LRSLEAIYMSK 170
           L SCG        +   + +   L+ L LG N      +  +          L  +++ +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 171 CNFSGQ----ITSSLRNLTELVVLDMAQNSYG--GTMEI-EGKVHKWLLDPNMQNLNALN 223
           C  + +    +   LR    L  L +A N  G  G   + E      LL+P  Q L +L 
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET-----LLEPGCQ-LESLW 319

Query: 224 LSHNLLTGFD-QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKI 282
           +     T     H   +   N           L  + +S+NR          LC   +  
Sbjct: 320 VKSCSFTAACCSHFSSVLAQN---------RFLLELQISNNRLEDA--GVRELC-QGLGQ 367

Query: 283 VNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAI 342
              S LR L                           +A   + D     + +        
Sbjct: 368 PG-SVLRVLW--------------------------LADCDVSDSSCSSLAA-------- 392

Query: 343 PASISNLKGLQVLNLHNNNLQGHIPSCLG-----NLTNLESLDLSNNKFSGRIPQQLVEL 397
             ++     L+ L+L NN L       L          LE L L +  +S  +  +L  L
Sbjct: 393 --TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 450

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 59/352 (16%), Positives = 109/352 (30%), Gaps = 80/352 (22%)

Query: 62  HVVKLNLSHSCL--FGSINSSSSLYKLVHLEWLNLALNDFNSSEIQ---PEIINLSCSLK 116
            + KL+L + CL   G    SS+L  L  L+ L+L+ N    + +Q     +++  C L+
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 117 LLDLRSCGF----WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIG-----NLRSLEAIY 167
            L L  C         +   +      + L +  N+ +   +  +      +   LEA+ 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 168 MSKCNFSGQ----ITSSLRNLTELVVLDMAQNSYG--GTMEIEGKVHKWLLDPNMQNLNA 221
           +  C  +      +   + +   L  L +  N  G  G  E+       LL P+   L  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL----CPGLLHPS-SRLRT 260

Query: 222 LNLSHNLLTGFD-QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAM 280
           L +    +T      L  +               L+ + L+ N                 
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAK---------ESLKELSLAGNELGD------------- 298

Query: 281 KIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDG 340
                   R L + L   G  L + +            +              S      
Sbjct: 299 -----EGARLLCETLLEPGCQLESLW------------VKSCSFTAACCSHFSS------ 335

Query: 341 AIPASISNLKGLQVLNLHNNNLQG----HIPSCLG-NLTNLESLDLSNNKFS 387
                ++  + L  L + NN L+      +   LG   + L  L L++   S
Sbjct: 336 ----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 13/102 (12%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIPQQ-LVELT 398
                +   + L  L + N     H+    L  L  L +L +  +     +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 399 FLAFFNVSDNYLTGLIPQGKQFATFDNTS-----FDGNSGLC 435
            L+  N+S N L  L  +     T    S       GN   C
Sbjct: 81  RLSRLNLSFNALESLSWK-----TVQGLSLQELVLSGNPLHC 117

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 40/268 (14%), Positives = 74/268 (27%), Gaps = 84/268 (31%)

Query: 133 IGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192
                      LG  + +   L S   L  ++       N      + ++  T L  L +
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGF 252
           + N      ++        L  ++  L  L+++ N L   +               G   
Sbjct: 71  SHNQ---ISDLSP------LK-DLTKLEELSVNRNRLKNLN---------------GIPS 105

Query: 253 SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTM 312
           + L  + L +N                    +   L+ L+ +LS                
Sbjct: 106 ACLSRLFLDNNELR--------------DTDSLIHLKNLE-ILS---------------- 134

Query: 313 NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 372
                 +  NK+  I                  +  L  L+VL+LH N +       L  
Sbjct: 135 ------IRNNKLKSI----------------VMLGFLSKLEVLDLHGNEITNTGG--LTR 170

Query: 373 LTNLESLDLSNNKFSGRIPQQLVELTFL 400
           L  +  +DL+  K      +   EL   
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 45/276 (16%), Positives = 85/276 (30%), Gaps = 61/276 (22%)

Query: 132 SIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT--SSLRNLTELVV 189
           S    + +Q      +N     L  +    +L+ +++S      QI+  S L++LT+L  
Sbjct: 36  SQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN----QISDLSPLKDLTKLEE 89

Query: 190 LDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTG 249
           L + +N       + G             L+ L L +N L               +  + 
Sbjct: 90  LSVNRNR---LKNLNG--------IPSACLSRLFLDNNELR--------------DTDSL 124

Query: 250 CGFSKLRIIDLSDNRFT-----GKLPSKSFLCWNAMKIVNASELRYLQ--DVLSPSG--- 299
                L I+ + +N+       G L     L  +  +I N   L  L+  + +  +G   
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC 184

Query: 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHN 359
                 Y   L +         N + D     I          P  ISN        +  
Sbjct: 185 VNEPVKYQPELYIT--------NTVKDPDGRWI---------SPYYISNGGSYVDGCV-L 226

Query: 360 NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 395
             L  +        +   ++  +   F G + Q + 
Sbjct: 227 WELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIK 262

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 345 SISNLKG--LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402
           +++ +    L  L L NN L+      L +L NLE L + NNK    I   L  L+ L  
Sbjct: 99  NLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEV 154

Query: 403 FNVSDNYLTGLIP 415
            ++  N +T    
Sbjct: 155 LDLHGNEITNTGG 167

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 35/299 (11%), Positives = 92/299 (30%), Gaps = 62/299 (20%)

Query: 133 IGNFTRLQFLYLGFNNFSGD----LLGSIGNLRSLEAIYMSKCNFSGQ----ITSSLRNL 184
           +  F+ ++   L  +  + +    +   +    S++ I +S      +    ++ ++ + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLD--PNMQNLNALNLSHNLLTGFD-QHLVLLPG 241
            +L + + +    G   +   +  + LL        L+ + LS N       + L+    
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301
            +         + L  + L +N    +          A   + A  L+ L          
Sbjct: 120 KH---------TPLEHLYLHNNGLGPQ----------AGAKI-ARALQELAVNKKAKNAP 159

Query: 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNN 361
            + +                N++ +    +             +  + + L  + +  N 
Sbjct: 160 PLRSII-----------CGRNRLEN--GSMK--------EWAKTFQSHRLLHTVKMVQNG 198

Query: 362 L-----QGHIPSCLGNLTNLESLDLSNNKFSGR----IPQQLVELTFLAFFNVSDNYLT 411
           +     +  +   L     L+ LDL +N F+      +   L     L    ++D  L+
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 38/213 (17%)

Query: 80  SSSLYKLVHLEWLNLALNDFNSSEIQP--EIINLSCSLKLLDLRSCGF------------ 125
             +L K   L  + L+ N F  +  +P  + ++    L+ L L + G             
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 126 -WGKVPHSIGNFTRLQFLYLGFNNF---SGDLLGS-IGNLRSLEAIYMSKCNFSGQ---- 176
               V     N   L+ +  G N     S         + R L  + M +     +    
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 177 -ITSSLRNLTELVVLDMAQNSYG--GTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233
            +   L    EL VLD+  N++   G+  +     K     +  NL  L L+  LL+   
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIALK-----SWPNLRELGLNDCLLS--A 258

Query: 234 QHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT 266
           +    +     +  +      L+ + L  N   
Sbjct: 259 RGAAAV----VDAFSKLENIGLQTLRLQYNEIE 287

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 15/91 (16%)

Query: 341 AIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIP----QQL 394
            I      +L  L  L L  N +Q  +       L++L+ L       +  +       L
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL 123

Query: 395 VELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
             L  L   NV+ N +            F N
Sbjct: 124 KTLKEL---NVAHNLIQSFKLPE----YFSN 147

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 42/279 (15%), Positives = 81/279 (29%), Gaps = 89/279 (31%)

Query: 129 VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS----SLRNL 184
           +P ++      + L L FN        S  +   L+ + +S+C    +I +    + ++L
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSL 75

Query: 185 TELVVLDMAQNSYGGTMEIEGKVHKWLLDP----NMQNLNALNLSHNLLTG-----FD-- 233
           + L  L +  N           +    L       + +L  L      L           
Sbjct: 76  SHLSTLILTGN----------PIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 234 ---QHLVLLPGNN-----EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNA 285
              + L +   +N     + P      + L  +DLS N+    +                
Sbjct: 124 KTLKELNV--AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDL--------RVL 172

Query: 286 SELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPAS 345
            ++  L   L                       ++ N +  I  G       F       
Sbjct: 173 HQMPLLNLSLD----------------------LSLNPMNFIQPGA------FK------ 198

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 384
              ++ L+ L L  N L+         LT+L+ + L  N
Sbjct: 199 --EIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 334 SNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP-- 391
              +F   IP ++      + L+L  N L+        +   L+ LDLS  +    I   
Sbjct: 15  MELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG 70

Query: 392 --QQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTS 427
             Q L  L+ L    ++ N +   +  G     F   S
Sbjct: 71  AYQSLSHLSTL---ILTGNPIQ-SLALG----AFSGLS 100

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 15/91 (16%)

Query: 341 AIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ-----QL 394
           ++     S L  LQ L     NL       +G+L  L+ L++++N              L
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNL 148

Query: 395 VELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
             L  L   ++S N +   I           
Sbjct: 149 TNLEHL---DLSSNKIQS-IYCT----DLRV 171

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLAFFN 404
           +  L  L+ L L +N + G +        NL  L+LS NK       + L +L  L   +
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 405 VSDN 408
           + + 
Sbjct: 120 LFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 331 IILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI 390
           ++ +++S +G +       + L+ L+  N  L   I + L  L  L+ L+LS+N+ SG +
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGL 80

Query: 391 PQQLVELTFLAFFNVSDNYLTGL 413
                +   L   N+S N +  L
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDL 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 61/352 (17%), Positives = 109/352 (30%), Gaps = 96/352 (27%)

Query: 98  DFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSI 157
           DF + E Q          +  D+        +      F           +   D+  SI
Sbjct: 8   DFETGEHQ---------YQYKDI--------LSVFEDAFVD----NFDCKDVQ-DMPKSI 45

Query: 158 GNLRSLEAIYMSKCNFSGQ------ITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWL 211
            +   ++ I MSK   SG       + S    + +  V ++ + +Y   M     +    
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS---PIKTEQ 102

Query: 212 LDPNMQN---LNALNLSHNLLTGFDQHLVLLPGNNEEP----RT---------------- 248
             P+M     +   +  +N    F ++ V    +  +P    R                 
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 249 -GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE--LRYLQDVLSPSGKLLMTT 305
            G G + + +      +   K+  K F  W  +K  N+ E  L  LQ +L        + 
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 306 YDY-----LLTMNIKG---RMMAYNKIPDILAGIILSN-------KSFDGAIPASISNLK 350
            D+     L   +I+    R++      + L  ++L N        +F+        + K
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNL-------SCK 267

Query: 351 GL------QVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNKFSGRIPQQL 394
            L      QV +  +     HI        LT  E   L   K+    PQ L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDL 318

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 46/275 (16%), Positives = 77/275 (28%), Gaps = 94/275 (34%)

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
            C+  +L          VP S+   +    L L  NN           L  L A      
Sbjct: 17  LCASNILSCSKQQL-PNVPQSL--PSYTALLDLSHNN-----------LSRLRA------ 56

Query: 172 NFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTG 231
                   +   LT L  L ++ N       +   +        + NL  L+LS N L  
Sbjct: 57  ------EWTPTRLTNLHSLLLSHN------HLN-FISSEAFV-PVPNLRYLDLSSNHLHT 102

Query: 232 FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL 291
            D+ L                  L ++ L +N     +   +F         + ++L+ L
Sbjct: 103 LDEFLFS------------DLQALEVLLLYNNHIV-VVDRNAF--------EDMAQLQKL 141

Query: 292 QDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG 351
                                      ++ N+I      +               + L  
Sbjct: 142 Y--------------------------LSQNQISRFPVEL------IKD-----GNKLPK 164

Query: 352 LQVLNLHNNNLQGHIPSCLGNLTNL--ESLDLSNN 384
           L +L+L +N L+    + L  L       L L NN
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 38/196 (19%), Positives = 53/196 (27%), Gaps = 66/196 (33%)

Query: 215 NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF 274
            + NL++L LSHN       HL  +               LR +DLS N     L    F
Sbjct: 62  RLTNLHSLLLSHN-------HLNFIS-----SEAFVPVPNLRYLDLSSNHLH-TLDEFLF 108

Query: 275 LCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILS 334
                    +   L  L                           +  N I  +       
Sbjct: 109 --------SDLQALEVLL--------------------------LYNNHIVVVDRN---- 130

Query: 335 NKSFDGAIPASISNLKGLQVLNLHNNNLQGHIP----SCLGNLTNLESLDLSNNKFSGRI 390
             +F+         +  LQ L L  N +    P         L  L  LDLS+NK     
Sbjct: 131 --AFED--------MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 391 PQQLVELTFLAFFNVS 406
              L +L       + 
Sbjct: 180 LTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 22/107 (20%)

Query: 321 YNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSC-LGNLTNLESL 379
           +N +  + A    +              L  L  L L +N+L   I S     + NL  L
Sbjct: 48  HNNLSRLRAEWTPTR-------------LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYL 93

Query: 380 DLSNNKFSGRIPQQ-LVELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
           DLS+N     + +    +L  L    + +N++  ++ +      F++
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRN----AFED 134

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF 403
              L+ L+ L ++NN +          L +L  L L+NN        +L +L  LA  
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-----ELGDLDPLASL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 18/126 (14%)

Query: 77  INSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC---SLKLLDLRSCGFWGKVPHSI 133
           I  ++     V    L+L           P I NL         +D             +
Sbjct: 9   IEQAAQYTNAVRDRELDLRGYKI------PVIENLGATLDQFDAIDFSDNEI-----RKL 57

Query: 134 GNF---TRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QITSSLRNLTELVV 189
             F    RL+ L +  N       G    L  L  + ++  +         L +L  L  
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 190 LDMAQN 195
           L + +N
Sbjct: 118 LCILRN 123

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 39/277 (14%), Positives = 75/277 (27%), Gaps = 78/277 (28%)

Query: 137 TRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITS----SLRNLTELVVLDM 192
              Q L L   +       +  NL ++  IY+S       +      S  NL+++  +++
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV---TLQQLESHSFYNLSKVTHIEI 87

Query: 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGF 252
                     I+    K      +  L  L + +  L  F     +              
Sbjct: 88  RNTRN--LTYIDPDALK-----ELPLLKFLGIFNTGLKMFPDLTKVY-----------ST 129

Query: 253 SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTM 312
               I++++DN +   +P  +F             L      L                 
Sbjct: 130 DIFFILEITDNPYMTSIPVNAF-----------QGLCNETLTLK---------------- 162

Query: 313 NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCL-- 370
                 +  N    +         +F+G         K L  + L+ N     I      
Sbjct: 163 ------LYNNGFTSV------QGYAFNG--------TK-LDAVYLNKNKYLTVIDKDAFG 201

Query: 371 GNLTNLESLDLSNNKFS---GRIPQQLVELTFLAFFN 404
           G  +    LD+S    +    +  + L EL     + 
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 28/178 (15%), Positives = 64/178 (35%), Gaps = 16/178 (8%)

Query: 58  KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII-NLSCSLK 116
            N  ++ ++ +S       +  S S Y L  +  + +     N + I P+ +  L   LK
Sbjct: 52  SNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELP-LLK 108

Query: 117 LLDLRSCGFWGKVPH--SIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRS-LEAIYMSKCN 172
            L + + G     P    + +      L +  N +   + + +   L +    + +    
Sbjct: 109 FLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 173 FSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLT 230
           F+  +     N T+L  + + +N Y     +   + K          + L++S   +T
Sbjct: 168 FT-SVQGYAFNGTKLDAVYLNKNKY-----LT-VIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 347 SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIPQQ--LVELTFLAFF 403
            NL  +  + + N     +I    L  L  L+ L + N       P    +         
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFIL 135

Query: 404 NVSDNYLTGLIPQG 417
            ++DN     IP  
Sbjct: 136 EITDNPYMTSIPVN 149

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLAFFN 404
           +  L  L+ L L  N + G +      L NL  L+LS NK       + L +L  L   +
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 405 VSDN 408
           + + 
Sbjct: 127 LFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 312 MNIKGRMMA--YNKIPDILAGIILSN-KSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS 368
           M++K R+     N+ P  +  ++L N KS DG I    +    L+ L+L N  L   + S
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-S 65

Query: 369 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413
            L  L  L+ L+LS N+  G +     +L  L   N+S N L  +
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 334 SNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS---GRI 390
           S+K    AIP++I      + L+L +N L          LT L  L L++NK       I
Sbjct: 24  SSKKLT-AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80

Query: 391 PQQLVELTFLAFFNVSDNYLTGL 413
            ++L  L  L    V+DN L  L
Sbjct: 81  FKELKNLETL---WVTDNKLQAL 100

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 341 AIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ----QLV 395
           A+P  +   L  L  L L  N L+   P    +LT L  L L  N+    +P+    +L 
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 396 ELTFLAFFNVSDNYLTGL 413
            L  L    + +N L  +
Sbjct: 158 SLKEL---RLYNNQLKRV 172

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 7e-05
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 12/90 (13%)

Query: 334 SNKSFDGAIPA-----SISNLKGLQVLNLHNNNLQGHIPSCLGN---LTNLESLDLSNNK 385
            +  FDG +       S      L+ L + +   Q  +         L  LE++D+S   
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 386 FSGRIPQQLVE----LTFLAFFNVSDNYLT 411
            +    + L++    +  L F N+  NYL+
Sbjct: 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 7/57 (12%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 344 ASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE 396
                L  L+ +++    L       +   +  + +L+ +++  N  S  + ++L +
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 334 SNKSFDGA-IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386
             +    A +P +         L L  NNL    P  L  L  L +  L  N +
Sbjct: 16  GRRGLTWASLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 342 IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLA 401
           + A++S LK  + L L  NN++  I S L  + NL  L L  N    +I         L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 402 FFNVSDNYLTGL 413
              +S N +  L
Sbjct: 97  ELWISYNQIASL 108

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 32/126 (25%)

Query: 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTM 201
           L+         +  ++  L++ + + +S  N   +I SSL  +  L +L + +N      
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRN---LIK 83

Query: 202 EIEGKVHKWLLDPNMQNLNALNLSHNLLT---GFDQHLVLLPGNNEEPRTGCGFSKLRII 258
           +IE       LD     L  L +S+N +    G +                     LR++
Sbjct: 84  KIEN------LDAVADTLEELWISYNQIASLSGIE-----------------KLVNLRVL 120

Query: 259 DLSDNR 264
            +S+N+
Sbjct: 121 YMSNNK 126

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 52/352 (14%), Positives = 108/352 (30%), Gaps = 85/352 (24%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLKLLDLRS 122
           +N   +   GS            +  L+L+LN+  S    E+     N   S+  L+L  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 123 CGFWGKVPHSIG-----NFTRLQFLYLGFNNFSGDLLGSIGNL-----RSLEAIYMSKCN 172
                K    +          +  L L  N  S      +         ++  + +   +
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 173 FSGQ----ITSSLRNL-TELVVLDMAQNSYG--GTMEI-EGKVHKWLLDPNMQNLNALNL 224
           FS +       +  NL   +  L++  N  G   + E+ +      L      N+N+LNL
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-----LAAIP-ANVNSLNL 174

Query: 225 SHNLLTGFD-QHLV-LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKI 282
             N L   +   L   L             + +  +DLS N    K              
Sbjct: 175 RGNNLASKNCAELAKFLASIP---------ASVTSLDLSANLLGLKS------------- 212

Query: 283 VNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAI 342
              +EL            +  +  ++++++N+       N +      +          +
Sbjct: 213 --YAEL----------AYIFSSIPNHVVSLNL-----CLNCLHG--PSLE--------NL 245

Query: 343 PASISNLKGLQVLNLHNNNLQG-------HIPSCLGNLTNLESLDLSNNKFS 387
                +LK LQ + L  + ++         + +   N+  +  +D +  +  
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP----QQLVE 396
            IP ++     +  + L  N ++   P        L  +DLSNN+ S  +     Q L  
Sbjct: 25  EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 397 LTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
           L  L    +  N +T L P+      F+ 
Sbjct: 82  LNSL---VLYGNKITEL-PKS----LFEG 102

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 334 SNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP-- 391
           SNK     +P  I   + +  L L  N     +P  L N  +L  +DLSNN+ S  +   
Sbjct: 18  SNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQ 72

Query: 392 --QQLVELTFLAFFNVSDNYLTGLIPQG 417
               + +L  L    +S N L  + P  
Sbjct: 73  SFSNMTQLLTL---ILSYNRLRCI-PPR 96

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 349 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN 408
           L  L VL+L  N L     +    L +L+ L +  NK +  +P+ +  LT L    +  N
Sbjct: 87  LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145

Query: 409 YLTGLIPQGKQFATFDN 425
            L   IP G     FD 
Sbjct: 146 QLKS-IPHG----AFDR 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	517
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.77
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.89
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	85.53
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	83.07

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-49  Score=432.70  Aligned_cols=125  Identities=40%  Similarity=0.661  Sum_probs=118.1

Q ss_pred             CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCE
Q 036049          323 KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF  402 (517)
Q Consensus       323 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  402 (517)
                      .....|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..|+.+++|++|||++|++++.+|..+..+++|++
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            33567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCcccccCCCCCcCCccCCCcccCCCCCCCCCCCCCCCCCCC
Q 036049          403 FNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEA  448 (517)
Q Consensus       403 L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~~~~~c~~~~~  448 (517)
                      |++++|+++|.+|+..+|.++...++.|||.+||.|+. .|.....
T Consensus       709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            99999999999999999999999999999999999987 8976543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.2e-45  Score=355.82  Aligned_cols=304  Identities=34%  Similarity=0.550  Sum_probs=229.0

Q ss_pred             CCCchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcc--cceeecCCCC--CcEEEEEcCCCCcee--e
Q 036049            3 PLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCS--WDGVHCNKNT--GHVVKLNLSHSCLFG--S   76 (517)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~--w~gv~c~~~~--~~l~~L~Ls~n~l~~--~   76 (517)
                      ..|.++|++||++||+++.++.          .+++|..   +.+||.  |.||.|....  ++|++|+|++|.+++  .
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~----------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~   67 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT----------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP   67 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG----------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc----------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcc
Confidence            3699999999999999986543          6789976   678998  9999998654  789999999999987  6


Q ss_pred             eCCCcccccCCCCCEEEcCC-CCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccc
Q 036049           77 INSSSSLYKLVHLEWLNLAL-NDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLG  155 (517)
Q Consensus        77 ~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~  155 (517)
                      ++.  .+.++++|++|++++ |.+.+. +|..+..+. +|++|++++|.+.+.+|..|.++++|++|++++|.+++.+|.
T Consensus        68 ~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  143 (313)
T 1ogq_A           68 IPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             CCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             cCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence            666  788888888888874 777654 666666666 777777777777666777777777777777777777766666


Q ss_pred             cccCCccccEEEcccccccccCchhhhcCC-cccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCC
Q 036049          156 SIGNLRSLEAIYMSKCNFSGQITSSLRNLT-ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQ  234 (517)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  234 (517)
                      .|..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++      .+|..+                       
T Consensus       144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------~~~~~~-----------------------  194 (313)
T 1ogq_A          144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------KIPPTF-----------------------  194 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE------ECCGGG-----------------------
T ss_pred             HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec------cCChHH-----------------------
Confidence            677777777777777776666666655554 45555555444431      222222                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeee
Q 036049          235 HLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNI  314 (517)
Q Consensus       235 ~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                                     ..++ |++|++++|.+++                                               
T Consensus       195 ---------------~~l~-L~~L~Ls~N~l~~-----------------------------------------------  211 (313)
T 1ogq_A          195 ---------------ANLN-LAFVDLSRNMLEG-----------------------------------------------  211 (313)
T ss_dssp             ---------------GGCC-CSEEECCSSEEEE-----------------------------------------------
T ss_pred             ---------------hCCc-ccEEECcCCcccC-----------------------------------------------
Confidence                           2232 5555555555542                                               


Q ss_pred             cCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc
Q 036049          315 KGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL  394 (517)
Q Consensus       315 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  394 (517)
                                                ..|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+
T Consensus       212 --------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          212 --------------------------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             --------------------------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             --------------------------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence                                      2334566778899999999999866665 7888999999999999998999999


Q ss_pred             ccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCCCCCCC
Q 036049          395 VELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGC  443 (517)
Q Consensus       395 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~~~~~c  443 (517)
                      ..+++|++|++++|+++|.+|....++.+..+++.+||++|+.|+. .|
T Consensus       265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            9999999999999999999999888999999999999999998765 36

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.2e-44  Score=382.78  Aligned_cols=406  Identities=18%  Similarity=0.191  Sum_probs=298.0

Q ss_pred             chHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCccc---ceeecCCCCCcEEEEEcCCCCceeeeCCCcc
Q 036049            6 HDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSW---DGVHCNKNTGHVVKLNLSHSCLFGSINSSSS   82 (517)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~w---~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~   82 (517)
                      ...|+.||.++++++..+. +.+..+..+...+|+.   +.+||.|   +||+|+.. ++|+.|+|+++++.|.+|.  +
T Consensus        28 ~~~d~~aL~~~~~~~~~~~-w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~  100 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKN-WSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--A  100 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGG-CCCCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--G
T ss_pred             HHHHHHHHHHHHHHcCCCC-cccCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--H
Confidence            3479999999999988755 2222333455679987   6899999   99999765 8999999999999999998  9


Q ss_pred             cccCCCCCEEEcCCCCC---------------------------------------------------------------
Q 036049           83 LYKLVHLEWLNLALNDF---------------------------------------------------------------   99 (517)
Q Consensus        83 l~~l~~L~~L~Ls~n~l---------------------------------------------------------------   99 (517)
                      ++++++|++|+|++|.+                                                               
T Consensus       101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  180 (636)
T 4eco_A          101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR  180 (636)
T ss_dssp             GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred             HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence            99999999999999954                                                               


Q ss_pred             ---------------CCCCCchhhhhcccCCcEEEccCCCCccc-----------------CCccCC--CCCCCcEEEcc
Q 036049          100 ---------------NSSEIQPEIINLSCSLKLLDLRSCGFWGK-----------------VPHSIG--NFTRLQFLYLG  145 (517)
Q Consensus       100 ---------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls  145 (517)
                                     ++  +|..+..+. +|++|+|++|.+++.                 +|+.++  ++++|++|+++
T Consensus       181 ~~l~~l~l~~~~n~l~~--ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~  257 (636)
T 4eco_A          181 ITLKDTQIGQLSNNITF--VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY  257 (636)
T ss_dssp             CCCCTTTTTCCSCEEEE--ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             cchhhhhhccccCCCcc--CCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence                           12  677777777 999999999999875                 999999  99999999999


Q ss_pred             CCcccccccccccCCccccEEEccccc-ccc-cCchhhhcC------CcccccccccccCcceecccccccc--cccccc
Q 036049          146 FNNFSGDLLGSIGNLRSLEAIYMSKCN-FSG-QITSSLRNL------TELVVLDMAQNSYGGTMEIEGKVHK--WLLDPN  215 (517)
Q Consensus       146 ~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~  215 (517)
                      +|.+.+.+|..|+++++|++|++++|. +++ .+|..++.+      ++|++|++++|.++       .+|.  .+..  
T Consensus       258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-------~ip~~~~l~~--  328 (636)
T 4eco_A          258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-------TFPVETSLQK--  328 (636)
T ss_dssp             CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-------SCCCHHHHTT--
T ss_pred             CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-------ccCchhhhcc--
Confidence            999999999999999999999999998 888 788888876      89999999999887       6676  6666  


Q ss_pred             CCCCCeEeccCCcccccCCCCCC--------CCCC--CCCCCCCCCCCc-ccEEEccCCcCCCCCChhhhhcc--cccce
Q 036049          216 MQNLNALNLSHNLLTGFDQHLVL--------LPGN--NEEPRTGCGFSK-LRIIDLSDNRFTGKLPSKSFLCW--NAMKI  282 (517)
Q Consensus       216 l~~L~~L~Ls~n~l~~~~~~~~l--------l~~~--~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~~l--~~L~~  282 (517)
                      +++|++|++++|.+++..+...-        +.++  ...+..+..+++ |++|++++|.++ .+|.. +...  ++|+.
T Consensus       329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~  406 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSA  406 (636)
T ss_dssp             CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEE
T ss_pred             CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-hhhcccCccCE
Confidence            88888888888888744432200        1111  012233456666 777777777776 66642 3332  35666


Q ss_pred             eccCcccccccc---cC-------C---------------Cccc-chhhhccceeeeecC-----ccccCCCch------
Q 036049          283 VNASELRYLQDV---LS-------P---------------SGKL-LMTTYDYLLTMNIKG-----RMMAYNKIP------  325 (517)
Q Consensus       283 L~l~~~~~l~~~---~~-------~---------------~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~------  325 (517)
                      |+++++......   +.       .               ..+. .......+..+.+.+     .+.......      
T Consensus       407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~  486 (636)
T 4eco_A          407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN  486 (636)
T ss_dssp             EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred             EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence            666553321100   00       0               0000 000011122222211     111111111      


Q ss_pred             -hhhhhhhCCCCCCcccCccccc--CCCCCCeEeCcCccccccCChhccCCCCCCeeeC------CCCcccccCcccccc
Q 036049          326 -DILAGIILSNKSFDGAIPASIS--NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL------SNNKFSGRIPQQLVE  396 (517)
Q Consensus       326 -~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~  396 (517)
                       +.|+.|++++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..
T Consensus       487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence             28899999999998 6787776  89999999999999996 8888999999999999      567788889999999


Q ss_pred             CCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCC
Q 036049          397 LTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCG  436 (517)
Q Consensus       397 l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~  436 (517)
                      +++|++|++++|++ +.+|.. ..+.+..+++++||+.|-
T Consensus       565 l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          565 CPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI  602 (636)
T ss_dssp             CSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred             CCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence            99999999999999 566665 337888999999998873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4e-41  Score=365.26  Aligned_cols=397  Identities=18%  Similarity=0.196  Sum_probs=264.4

Q ss_pred             CCchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCC--CCCCC--ccc------------ceeecCCCCCcEEEEE
Q 036049            4 LCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEE--GNVDC--CSW------------DGVHCNKNTGHVVKLN   67 (517)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~--C~w------------~gv~c~~~~~~l~~L~   67 (517)
                      .+..+|+.||++||+++.++              +|+...  ...+|  |.|            .||.|+. .++|+.|+
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~  329 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLS  329 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred             ccchHHHHHHHHHHHHcCCC--------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEE
Confidence            34568999999999998642              443310  01244  899            9999986 47999999


Q ss_pred             cCCCCceeeeCCCcccccCCCCCEEEc-CCCCCCCC--------------------------------------------
Q 036049           68 LSHSCLFGSINSSSSLYKLVHLEWLNL-ALNDFNSS--------------------------------------------  102 (517)
Q Consensus        68 Ls~n~l~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~--------------------------------------------  102 (517)
                      |+++++.|.+|+  .++++++|++|+| ++|.+.+.                                            
T Consensus       330 Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~  407 (876)
T 4ecn_A          330 LAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA  407 (876)
T ss_dssp             CTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred             CccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence            999999999998  9999999999999 77743221                                            


Q ss_pred             -------------------------------CCchhhhhcccCCcEEEccCCCCcc-----------------cCCccCC
Q 036049          103 -------------------------------EIQPEIINLSCSLKLLDLRSCGFWG-----------------KVPHSIG  134 (517)
Q Consensus       103 -------------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~-----------------~~p~~~~  134 (517)
                                                     .+|..+..+. +|++|+|++|.+++                 .+|..++
T Consensus       408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             hhhCccccccccccccchhhceeccccCcccchhHHHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence                                           0667777777 99999999999987                 3899988


Q ss_pred             --CCCCCcEEEccCCcccccccccccCCccccEEEccccc-ccc-cCchhhhcCC-------cccccccccccCcceecc
Q 036049          135 --NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN-FSG-QITSSLRNLT-------ELVVLDMAQNSYGGTMEI  203 (517)
Q Consensus       135 --~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~N~l~~~~~~  203 (517)
                        ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+..++       +|++|++++|.++     
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----  561 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----  561 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----
T ss_pred             hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----
Confidence              99999999999999999999999999999999999998 887 7888777766       9999999999987     


Q ss_pred             cccccc--ccccccCCCCCeEeccCCcccccCCCCCC--------CCCC--CCCCCCCCCCCc-ccEEEccCCcCCCCCC
Q 036049          204 EGKVHK--WLLDPNMQNLNALNLSHNLLTGFDQHLVL--------LPGN--NEEPRTGCGFSK-LRIIDLSDNRFTGKLP  270 (517)
Q Consensus       204 ~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l--------l~~~--~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p  270 (517)
                        .+|.  .+..  +++|++|++++|.++.++ ...-        +.++  ...+..+..+++ |++|++++|.++ .+|
T Consensus       562 --~ip~~~~l~~--L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          562 --EFPASASLQK--MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             --BCCCHHHHTT--CTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             --ccCChhhhhc--CCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc
Confidence              6777  6776  899999999999988554 2200        1110  012223445555 666666666655 455


Q ss_pred             hhhhhccc--ccceeccCcccccccc--cC-CC---------------cc---cch---hhhccceeeeecC-----ccc
Q 036049          271 SKSFLCWN--AMKIVNASELRYLQDV--LS-PS---------------GK---LLM---TTYDYLLTMNIKG-----RMM  319 (517)
Q Consensus       271 ~~~~~~l~--~L~~L~l~~~~~l~~~--~~-~~---------------~~---~~~---~~~~~~~~~~~~~-----~~~  319 (517)
                      . .+....  +|+.|+++++......  +. ..               +.   ...   .....+..+.+.+     .+.
T Consensus       636 ~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          636 N-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             S-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             h-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence            3 222222  2555555543221100  00 00               00   000   0001111111111     111


Q ss_pred             cCCCch-------hhhhhhhCCCCCCcccCccccc--CCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC------C
Q 036049          320 AYNKIP-------DILAGIILSNKSFDGAIPASIS--NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN------N  384 (517)
Q Consensus       320 ~~~~~~-------~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N  384 (517)
                      ......       +.|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N  792 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN  792 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence            111111       26666777777766 5566665  66777777777777764 566666777777777755      5


Q ss_pred             cccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCC
Q 036049          385 KFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGL  434 (517)
Q Consensus       385 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~  434 (517)
                      ++.+.+|..+..+++|+.|+|++|++ +.+|.. ..+.+..+++++||+.
T Consensus       793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNI  840 (876)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTC
T ss_pred             cccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCC
Confidence            66666677777777777777777777 455554 2356666677777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-40  Score=362.18  Aligned_cols=145  Identities=25%  Similarity=0.257  Sum_probs=118.1

Q ss_pred             cccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCC-chhhhhcccCCcEEEccCCCCcc
Q 036049           49 CSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEI-QPEIINLSCSLKLLDLRSCGFWG  127 (517)
Q Consensus        49 C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~  127 (517)
                      |.|..|.+  .+.++++|+|++|.+++..+.  .|.++++|++|+|++|.+... + |..+..+. +|++|+|++|.+.+
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~-~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLP-NLRILDLGSSKIYF   87 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCT-TCCEEECTTCCCCE
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCC-CCCEEECCCCcCcc
Confidence            55777776  457899999999999887777  889999999999999966543 5 44555565 89999999999988


Q ss_pred             cCCccCCCCCCCcEEEccCCccccccccc--ccCCccccEEEcccccccccCc-hhhhcCCcccccccccccCcc
Q 036049          128 KVPHSIGNFTRLQFLYLGFNNFSGDLLGS--IGNLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNSYGG  199 (517)
Q Consensus       128 ~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~l~~  199 (517)
                      ..|..|+++++|++|+|++|.+++..|..  |+++++|++|+|++|.+++..+ ..|+++++|++|++++|.+++
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            88888999999999999999998766655  8889999999999998886654 578888999999988887754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.2e-39  Score=330.68  Aligned_cols=377  Identities=21%  Similarity=0.208  Sum_probs=292.4

Q ss_pred             Ccccce--eecCCC--------CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCc
Q 036049           48 CCSWDG--VHCNKN--------TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLK  116 (517)
Q Consensus        48 ~C~w~g--v~c~~~--------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~  116 (517)
                      .|.|.+  +.|...        ..++++|+|++|.+++..+.  .|.++++|++|++++|.+... +++ .+..+. +|+
T Consensus         7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~-~L~   82 (455)
T 3v47_A            7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLS-SLI   82 (455)
T ss_dssp             CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCE-ECTTTTTTCT-TCC
T ss_pred             eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccce-ECcccccccc-cCC
Confidence            355544  777532        25799999999999988777  899999999999999998754 544 455565 999


Q ss_pred             EEEccCCCCcccCCccCCCCCCCcEEEccCCccccccccc--ccCCccccEEEcccccccccCchh-hhcCCcccccccc
Q 036049          117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGS--IGNLRSLEAIYMSKCNFSGQITSS-LRNLTELVVLDMA  193 (517)
Q Consensus       117 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~  193 (517)
                      +|++++|.+.+..|..|+++++|++|++++|.+++..+..  |..+++|++|++++|.+++..|.. +.++++|++|+++
T Consensus        83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A           83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            9999999998888999999999999999999999766655  999999999999999999887776 8999999999999


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS  273 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  273 (517)
                      +|.+++      ..+..+..-...+|+.|++++|.+.+..+...-    ......+..+++|++|++++|.+++..|...
T Consensus       163 ~n~l~~------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  232 (455)
T 3v47_A          163 FNKVKS------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG----WEKCGNPFKNTSITTLDLSGNGFKESMAKRF  232 (455)
T ss_dssp             TCCBSC------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----HHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred             CCcccc------cChhhhhccccccccccccccCcccccchhhcc----ccccccccccceeeeEecCCCcccccchhhh
Confidence            999874      444444441237899999999999887543200    0000112456899999999999997766543


Q ss_pred             hhc--ccccceeccCcccccccccCCC-----cc--cchhhhccceeee-----ecCccccCCCchhhhhhhhCCCCCCc
Q 036049          274 FLC--WNAMKIVNASELRYLQDVLSPS-----GK--LLMTTYDYLLTMN-----IKGRMMAYNKIPDILAGIILSNKSFD  339 (517)
Q Consensus       274 ~~~--l~~L~~L~l~~~~~l~~~~~~~-----~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~  339 (517)
                      ...  ..+++.++++.+..........     ..  ........+..+.     +.+.........+.|+.|++++|.++
T Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  312 (455)
T 3v47_A          233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN  312 (455)
T ss_dssp             HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence            322  3678888887653332111100     00  0000001122222     22223333455788999999999999


Q ss_pred             ccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-C
Q 036049          340 GAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-K  418 (517)
Q Consensus       340 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~  418 (517)
                      +..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++.++.. .
T Consensus       313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence            988999999999999999999999888899999999999999999999888999999999999999999999877754 5


Q ss_pred             cCCccCCCcccCCCCCCCCC
Q 036049          419 QFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       419 ~~~~l~~~~~~~Np~~c~~~  438 (517)
                      .+..++.+++++||+.|+||
T Consensus       393 ~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          393 RLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCTTCCEEECCSSCBCCCTT
T ss_pred             cCCcccEEEccCCCcccCCC
Confidence            67889999999999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.9e-38  Score=332.52  Aligned_cols=374  Identities=18%  Similarity=0.150  Sum_probs=261.3

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      +.++++|+|++|.+++..+.  .|.++++|++|++++|.++.. .|..+..+. +|++|++++|.+.+..|..|+++++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchh-hcCEeECCCCcccccChhhcCCcccC
Confidence            46789999999999887776  889999999999999998873 344555666 99999999999987778889999999


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccc-cCchhhhcCCcccccccccccCcceecc--------c------
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTMEI--------E------  204 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~--------~------  204 (517)
                      ++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|.++++|++|++++|.+++....        .      
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L  186 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL  186 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence            999999999987777888899999999999998875 5688888899999999888877643200        0      


Q ss_pred             -------ccccccccc----------------------------------------------------------------
Q 036049          205 -------GKVHKWLLD----------------------------------------------------------------  213 (517)
Q Consensus       205 -------~~~~~~~~~----------------------------------------------------------------  213 (517)
                             ..++...+.                                                                
T Consensus       187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  266 (606)
T 3vq2_A          187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF  266 (606)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred             eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence                   000100000                                                                


Q ss_pred             -------------------------------------ccCCCCCeEeccCCcccccCCCCCC-------CCCC-CCCCCC
Q 036049          214 -------------------------------------PNMQNLNALNLSHNLLTGFDQHLVL-------LPGN-NEEPRT  248 (517)
Q Consensus       214 -------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~l-------l~~~-~~~~~~  248 (517)
                                                           +.+++|++|++++|.+..++ ...+       +.+. ......
T Consensus       267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~~l~~L~~L~l~~n~~~~~~~  345 (606)
T 3vq2_A          267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TLDLPFLKSLTLTMNKGSISFK  345 (606)
T ss_dssp             EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CCCCSSCCEEEEESCSSCEECC
T ss_pred             eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cCCCCccceeeccCCcCccchh
Confidence                                                 01234555555555553332 1100       0011 112224


Q ss_pred             CCCCCcccEEEccCCcCCCC--CChhhhhcccccceeccCccccccc--ccCCC----------cc-------cchhhhc
Q 036049          249 GCGFSKLRIIDLSDNRFTGK--LPSKSFLCWNAMKIVNASELRYLQD--VLSPS----------GK-------LLMTTYD  307 (517)
Q Consensus       249 ~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~l~~L~~L~l~~~~~l~~--~~~~~----------~~-------~~~~~~~  307 (517)
                      +..+++|++|++++|.+++.  +| ..+..+++|+.|+++++.....  .+...          ..       .......
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCS-YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECC-HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hccCCCCCEEECcCCccCCCcchh-hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            56788888888888888743  24 4466777777777776432110  00000          00       0000111


Q ss_pred             cceeeeec-----CccccCCCchhhhhhhhCCCCCCcc-cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049          308 YLLTMNIK-----GRMMAYNKIPDILAGIILSNKSFDG-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL  381 (517)
Q Consensus       308 ~~~~~~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  381 (517)
                      .+..+.+.     +.........+.|+.|++++|.+++ .+|..+..+++|+.|+|++|++++..|..|..+++|++|+|
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            12222221     1222233446788889999999887 47888889999999999999999888888999999999999


Q ss_pred             CCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCC-ccCCCcccCCCCCCCCCC
Q 036049          382 SNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFA-TFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       382 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~l~~~~~~~Np~~c~~~~  439 (517)
                      ++|++++..|..+..+++|++|++++|+++..++....+. .+..+++++||+.|+|+.
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999998889999999999999999999996555444454 488899999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.7e-37  Score=330.39  Aligned_cols=373  Identities=19%  Similarity=0.164  Sum_probs=264.6

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh-hhcccCCcEEEccCCCCcccCCccCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI-INLSCSLKLLDLRSCGFWGKVPHSIGNFTR  138 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  138 (517)
                      +..+++|||++|.|++..+.  +|.++++|++|+|++|+|+.  +++.. ..+. +|++|+|++|++.+..+..|.++++
T Consensus        51 p~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT--IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCE--ECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCC--cChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCC
Confidence            35799999999999988777  89999999999999999987  66654 4555 9999999999997777778999999


Q ss_pred             CcEEEccCCcccccccccccCCccccEEEcccccccc-cCchhhhcCCcccccccccccCcceecc--------------
Q 036049          139 LQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTMEI--------------  203 (517)
Q Consensus       139 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~--------------  203 (517)
                      |++|+|++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++...-              
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence            9999999999998777789999999999999999975 4678889999999999999987643200              


Q ss_pred             ---c----ccc---------------------------------------------------------------------
Q 036049          204 ---E----GKV---------------------------------------------------------------------  207 (517)
Q Consensus       204 ---~----~~~---------------------------------------------------------------------  207 (517)
                         .    ..+                                                                     
T Consensus       206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  285 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  285 (635)
T ss_dssp             EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred             hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence               0    000                                                                     


Q ss_pred             -------------ccccc--------------------cccCCCCCeEeccCCcccccCCCC------------------
Q 036049          208 -------------HKWLL--------------------DPNMQNLNALNLSHNLLTGFDQHL------------------  236 (517)
Q Consensus       208 -------------~~~~~--------------------~~~l~~L~~L~Ls~n~l~~~~~~~------------------  236 (517)
                                   +..+.                    .....+|+.|++.+|.+.......                  
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred             hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence                         00000                    001234555555555443332110                  


Q ss_pred             ---CC-------CCCC-C----CCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc-c
Q 036049          237 ---VL-------LPGN-N----EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG-K  300 (517)
Q Consensus       237 ---~l-------l~~~-~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~  300 (517)
                         .+       +..+ +    ..+..+..+.+|++++++.|.+. .++. .+..++.|+.+++.............. .
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~  443 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS  443 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECS-CCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccc-cccccccccchhhhhcccccccccccccc
Confidence               00       0011 0    11122234566777777777665 2332 255566666666655332221111000 0


Q ss_pred             cchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCc-ccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049          301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFD-GAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL  379 (517)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  379 (517)
                      ........+....+...........+.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|
T Consensus       444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  523 (635)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence            000001111111222223334455778999999999854 4577889999999999999999999899999999999999


Q ss_pred             eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCC-cC-CccCCCcccCCCCCCCCCC
Q 036049          380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGK-QF-ATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~-~~-~~l~~~~~~~Np~~c~~~~  439 (517)
                      +|++|+|++..|..|..+++|++|++++|+|++.+|... .+ .+++.+++++|||.|+|.+
T Consensus       524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            999999998888899999999999999999999998753 33 5788999999999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.6e-37  Score=315.35  Aligned_cols=338  Identities=16%  Similarity=0.116  Sum_probs=246.2

Q ss_pred             cceeecCC---------CCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEcc
Q 036049           51 WDGVHCNK---------NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR  121 (517)
Q Consensus        51 w~gv~c~~---------~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls  121 (517)
                      |..+.|..         -..+++.|+|++|.+++..+.  .|.++++|++|+|++|.++.. .|..+..+. +|++|+|+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~-~L~~L~L~   88 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLF-NLRTLGLR   88 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCT-TCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCc-cCCEEECC
Confidence            45677742         235789999999999887776  899999999999999999873 355666666 99999999


Q ss_pred             CCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCccee
Q 036049          122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTM  201 (517)
Q Consensus       122 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  201 (517)
                      +|.+....+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++   
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---  165 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---  165 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS---
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc---
Confidence            99997666667899999999999999999888888999999999999999999888888999999999999999887   


Q ss_pred             cccccccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhccccc
Q 036049          202 EIEGKVHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAM  280 (517)
Q Consensus       202 ~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L  280 (517)
                          .++. .+..  +++|+.|++++|.+.+..+.            .+..+++|++|++++|.+.+.+|...+.. .+|
T Consensus       166 ----~~~~~~l~~--l~~L~~L~l~~n~i~~~~~~------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L  226 (477)
T 2id5_A          166 ----SIPTEALSH--LHGLIVLRLRHLNINAIRDY------------SFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNL  226 (477)
T ss_dssp             ----SCCHHHHTT--CTTCCEEEEESCCCCEECTT------------CSCSCTTCCEEEEECCTTCCEECTTTTTT-CCC
T ss_pred             ----ccChhHhcc--cCCCcEEeCCCCcCcEeChh------------hcccCcccceeeCCCCccccccCcccccC-ccc
Confidence                3443 3444  89999999999999887543            45778899999999998877777654432 366


Q ss_pred             ceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCc
Q 036049          281 KIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNN  360 (517)
Q Consensus       281 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  360 (517)
                      +.|+++++....                        .........+.|+.|++++|.+++..+..|..+++|+.|+|++|
T Consensus       227 ~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          227 TSLSITHCNLTA------------------------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             SEEEEESSCCCS------------------------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred             cEEECcCCcccc------------------------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence            666665522110                        00001112456777777777777666666777777777777777


Q ss_pred             cccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049          361 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       361 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      ++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+....+.......+.++...|..|
T Consensus       283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            777666777777777777777777777655556666777777777777776554322222222334555666666443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.8e-37  Score=322.98  Aligned_cols=378  Identities=19%  Similarity=0.237  Sum_probs=250.8

Q ss_pred             CcccceeecCCC-----------CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCc
Q 036049           48 CCSWDGVHCNKN-----------TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLK  116 (517)
Q Consensus        48 ~C~w~gv~c~~~-----------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~  116 (517)
                      .|.|.|+ |+..           ..++++|+|++|.+++..+.  .|.++++|++|++++|++++. .|..+..+. +|+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~-~L~   77 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLG-SLE   77 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCT-TCC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-Chhhccccc-cCC
Confidence            4777776 6421           24789999999998877766  788899999999999988773 334555665 899


Q ss_pred             EEEccCCCCcccCCccCCCCCCCcEEEccCCcccc-cccccccCCccccEEEcccccccccC-chhhhcCCccccccccc
Q 036049          117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQI-TSSLRNLTELVVLDMAQ  194 (517)
Q Consensus       117 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~  194 (517)
                      +|++++|.+.+..|..|+++++|++|++++|.+++ ..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            99999998877666668888899999999998885 35677888888888888888843344 46788888888888888


Q ss_pred             ccCcceecc-----------------ccccccccccccCCCCCeEeccCCcccccCCCC----CCC--------------
Q 036049          195 NSYGGTMEI-----------------EGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHL----VLL--------------  239 (517)
Q Consensus       195 N~l~~~~~~-----------------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~ll--------------  239 (517)
                      |.+++....                 .+.+|..+.. .+++|++|++++|.+++.....    ...              
T Consensus       158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred             CcccccChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence            887752210                 0112222211 2788999999999988752100    000              


Q ss_pred             ---------------------------CC--CCC-----CCCC--------------------------CCCCCcccEEE
Q 036049          240 ---------------------------PG--NNE-----EPRT--------------------------GCGFSKLRIID  259 (517)
Q Consensus       240 ---------------------------~~--~~~-----~~~~--------------------------~~~l~~L~~L~  259 (517)
                                                 .+  .++     ....                          +...++|+.|+
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~  316 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT  316 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred             hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence                                       00  000     0000                          01124677777


Q ss_pred             ccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccc-------cCCCchhhhhhhh
Q 036049          260 LSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMM-------AYNKIPDILAGII  332 (517)
Q Consensus       260 Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~~L~  332 (517)
                      +++|.+. .+|...+..+++|+.|+++++..........  ........+..+.+.+...       .....+++|+.|+
T Consensus       317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~  393 (549)
T 2z81_A          317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS--ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD  393 (549)
T ss_dssp             EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH--TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred             eccCccc-cCCHHHHhcCccccEEEccCCccccccccch--hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence            7777776 7787766778888888888754332110000  0000011111222211111       1123356677777


Q ss_pred             CCCCCCcccCcccccCCCCCCeEeCcCccccccCChh------------------ccCCCCCCeeeCCCCcccccCcccc
Q 036049          333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSC------------------LGNLTNLESLDLSNNKFSGRIPQQL  394 (517)
Q Consensus       333 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------------------l~~l~~L~~L~Ls~N~l~~~~p~~l  394 (517)
                      +++|+++ .+|..+..+++|++|++++|+++ .+|..                  +..+++|++|+|++|+++ .+|. .
T Consensus       394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~  469 (549)
T 2z81_A          394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-A  469 (549)
T ss_dssp             CTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-G
T ss_pred             CCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-c
Confidence            7777777 56666666677777777777665 22222                  136789999999999998 6665 4


Q ss_pred             ccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCCCCCC
Q 036049          395 VELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       395 ~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      ..+++|++|++++|++++.+|.. ..+..+..+++++||+.|+|+
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            67899999999999999988863 567888999999999999886

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=311.87  Aligned_cols=366  Identities=19%  Similarity=0.172  Sum_probs=230.7

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      .+++.|+|++|.+++..+.  +|.++++|++|+|++|.++.  +++ .+..+. +|++|++++|.+.+..|..|+++++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT--IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCE--ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCc--cCcccccCch-hCCEEeCcCCcCCccCHhhhcCcccc
Confidence            4567777777777665555  66677777777777777665  333 333444 77777777777665555666777777


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccc-cCchhhhcCCcccccccccccCcceec----------------
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTME----------------  202 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~----------------  202 (517)
                      ++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|.++++|++|++++|.+++...                
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence            777777776665444456666677777777766664 346666666666666666666543210                


Q ss_pred             --------------------------------------------------------------------------------
Q 036049          203 --------------------------------------------------------------------------------  202 (517)
Q Consensus       203 --------------------------------------------------------------------------------  202 (517)
                                                                                                      
T Consensus       183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  262 (570)
T 2z63_A          183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  262 (570)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred             ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence                                                                                            


Q ss_pred             -------cccccccccccccCCCCCeEeccCCcccccCCCCCCC-------CC----CCCC------------------C
Q 036049          203 -------IEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLL-------PG----NNEE------------------P  246 (517)
Q Consensus       203 -------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll-------~~----~~~~------------------~  246 (517)
                             +.+.++..+..  +++|++|++++|.+++++....-.       .+    .++.                  .
T Consensus       263 ~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             EEEETTEEESCSTTTTGG--GTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred             hhhcchhhhhhchhhhcC--cCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence                   00111122222  456666666666666543321000       00    0000                  0


Q ss_pred             CCCCCCCcccEEEccCCcCCCCCC-hhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeec-----Cccc-
Q 036049          247 RTGCGFSKLRIIDLSDNRFTGKLP-SKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIK-----GRMM-  319 (517)
Q Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-  319 (517)
                      .....+++|++|++++|.+++... ...+..+++|+.|+++++.......      .......+..+.+.     +... 
T Consensus       341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~  414 (570)
T 2z63_A          341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS------NFLGLEQLEHLDFQHSNLKQMSEF  414 (570)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE------EEETCTTCCEEECTTSEEESCTTS
T ss_pred             cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc------cccccCCCCEEEccCCccccccch
Confidence            000234455555555555542210 1234445555555555432111000      00011112222222     2111 


Q ss_pred             cCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccc-ccCChhccCCCCCCeeeCCCCcccccCccccccCC
Q 036049          320 AYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT  398 (517)
Q Consensus       320 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  398 (517)
                      ......+.|+.|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|+|++|++++..|..+..++
T Consensus       415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence            23344678999999999999989999999999999999999997 57899999999999999999999988899999999


Q ss_pred             CCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCCCCCCC
Q 036049          399 FLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       399 ~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~~  439 (517)
                      +|++|++++|++++.+|.. ..+..++.+++++||+.|+|+.
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999999988764 5678889999999999998764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-36  Score=302.61  Aligned_cols=310  Identities=19%  Similarity=0.175  Sum_probs=248.6

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      .+++.|+++++.++...+.  .+..+++|++|++++|.++.  +++ .+..+. +|++|++++|.+.+..|..|+++++|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~--~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEE--IDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             CCCSEEEEESCEESEECTH--HHHHCCCCSEEECTTSCCCE--ECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCceEEEecCCchhhCChh--HhcccccCcEEECCCCcccc--cChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            5678889998888755443  57888999999999999876  444 455555 99999999999987777888999999


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      ++|++++|.++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++       ++  +..  +++|
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~--~~~--l~~L  188 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD--LSL--IPSL  188 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------CC--GGG--CTTC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------cc--ccc--cccc
Confidence            999999999985545557889999999999999987777888899999999999998873       22  222  7889


Q ss_pred             CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049          220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG  299 (517)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  299 (517)
                      ++|++++|.++++                 ...++|++|++++|.+. .+|..   ..++|+.|+++++.....      
T Consensus       189 ~~L~l~~n~l~~~-----------------~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~------  241 (390)
T 3o6n_A          189 FHANVSYNLLSTL-----------------AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT------  241 (390)
T ss_dssp             SEEECCSSCCSEE-----------------ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC------
T ss_pred             ceeeccccccccc-----------------CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc------
Confidence            9999999988765                 23457889999999887 44432   245777777776332210      


Q ss_pred             ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049          300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL  379 (517)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  379 (517)
                                          ......+.|+.|++++|.+++..|..+..+++|+.|+|++|+++ .+|..+..+++|++|
T Consensus       242 --------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L  300 (390)
T 3o6n_A          242 --------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL  300 (390)
T ss_dssp             --------------------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEE
T ss_pred             --------------------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEE
Confidence                                11223678999999999999988999999999999999999998 467677889999999


Q ss_pred             eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCC
Q 036049          380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGK  437 (517)
Q Consensus       380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~  437 (517)
                      +|++|+++ .+|..+..+++|++|++++|+++...  ...+..+..+++++||+.|++
T Consensus       301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             ECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchh
Confidence            99999998 67778889999999999999998764  456788999999999999965

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.4e-36  Score=316.93  Aligned_cols=303  Identities=19%  Similarity=0.197  Sum_probs=204.9

Q ss_pred             cEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccc
Q 036049          116 KLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQN  195 (517)
Q Consensus       116 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N  195 (517)
                      ++|++++|.+.+..+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence            33444444443333444556666666666666666 55666666666666666666666555666666666666666666


Q ss_pred             cCcceeccccccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhh
Q 036049          196 SYGGTMEIEGKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF  274 (517)
Q Consensus       196 ~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  274 (517)
                      .+.+      .++.. +..  +++|++|++++|.+++....          +..+..+++|++|++++|.+.+ ++...+
T Consensus       336 ~~~~------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~----------~~~~~~l~~L~~L~l~~n~l~~-~~~~~~  396 (606)
T 3t6q_A          336 TKRL------ELGTGCLEN--LENLRELDLSHDDIETSDCC----------NLQLRNLSHLQSLNLSYNEPLS-LKTEAF  396 (606)
T ss_dssp             SSCC------BCCSSTTTT--CTTCCEEECCSSCCCEEEES----------TTTTTTCTTCCEEECCSCSCEE-ECTTTT
T ss_pred             Cccc------ccchhhhhc--cCcCCEEECCCCccccccCc----------chhcccCCCCCEEECCCCcCCc-CCHHHh
Confidence            5542      33332 333  67777777777777665310          1235677888888888888874 444557


Q ss_pred             hcccccceeccCcccccccccCC-CcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCccc---CcccccCCC
Q 036049          275 LCWNAMKIVNASELRYLQDVLSP-SGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGA---IPASISNLK  350 (517)
Q Consensus       275 ~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~p~~~~~l~  350 (517)
                      ..+++|+.|+++++......... ...........+....+.+........++.|+.|++++|.+.+.   .+..+..++
T Consensus       397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~  476 (606)
T 3t6q_A          397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG  476 (606)
T ss_dssp             TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred             cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence            77788888888774432211110 00001111111112222223333344578899999999999873   335688999


Q ss_pred             CCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-CcCCccCCCccc
Q 036049          351 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFD  429 (517)
Q Consensus       351 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~  429 (517)
                      +|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..++.| +|++++|++++.+|.. ..+..++.++++
T Consensus       477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence            99999999999998889999999999999999999999999999999999 9999999999888764 456788899999


Q ss_pred             CCCCCCCCCC
Q 036049          430 GNSGLCGKPL  439 (517)
Q Consensus       430 ~Np~~c~~~~  439 (517)
                      +||+.|+|+.
T Consensus       556 ~N~~~c~c~~  565 (606)
T 3t6q_A          556 QNPLDCTCSN  565 (606)
T ss_dssp             TCCEECSGGG
T ss_pred             CCCccccCCc
Confidence            9999998863

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.1e-36  Score=308.04  Aligned_cols=324  Identities=19%  Similarity=0.211  Sum_probs=272.6

Q ss_pred             EEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEE
Q 036049           64 VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLY  143 (517)
Q Consensus        64 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  143 (517)
                      +.++.++++++. +|.  .+  .+++++|+|++|.++.. .+..+..+. +|++|+|++|.+.+..|..|.++++|++|+
T Consensus        14 ~~v~c~~~~l~~-ip~--~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~   86 (477)
T 2id5_A           14 RAVLCHRKRFVA-VPE--GI--PTETRLLDLGKNRIKTL-NQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLG   86 (477)
T ss_dssp             TEEECCSCCCSS-CCS--CC--CTTCSEEECCSSCCCEE-CTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcCc-CCC--CC--CCCCcEEECCCCccceE-CHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence            467888888874 443  33  36899999999999873 344566666 999999999999888899999999999999


Q ss_pred             ccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEe
Q 036049          144 LGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALN  223 (517)
Q Consensus       144 Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  223 (517)
                      |++|.++...+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+.+      ..+..+..  +++|++|+
T Consensus        87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~--l~~L~~L~  158 (477)
T 2id5_A           87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY------ISHRAFSG--LNSLEQLT  158 (477)
T ss_dssp             CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE------ECTTSSTT--CTTCCEEE
T ss_pred             CCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce------eChhhccC--CCCCCEEE
Confidence            99999997766778999999999999999998889999999999999999999873      33445555  99999999


Q ss_pred             ccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccch
Q 036049          224 LSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLM  303 (517)
Q Consensus       224 Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  303 (517)
                      +++|.++++++.            .+..+++|+.|++++|.+. .++...|..+++|+.|+++++..+......      
T Consensus       159 l~~n~l~~~~~~------------~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------  219 (477)
T 2id5_A          159 LEKCNLTSIPTE------------ALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPN------  219 (477)
T ss_dssp             EESCCCSSCCHH------------HHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTT------
T ss_pred             CCCCcCcccChh------------HhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcc------
Confidence            999999886543            3577899999999999998 566667889999999998875544321110      


Q ss_pred             hhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC
Q 036049          304 TTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN  383 (517)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  383 (517)
                                       .. ...+|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++
T Consensus       220 -----------------~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (477)
T 2id5_A          220 -----------------CL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG  281 (477)
T ss_dssp             -----------------TT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred             -----------------cc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence                             00 123799999999999966557889999999999999999988888899999999999999


Q ss_pred             CcccccCccccccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCCCCCCC
Q 036049          384 NKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       384 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~~  439 (517)
                      |++++..|..|..+++|++|++++|++++..+.. ..+..++.+++++||+.|+|+.
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            9999999999999999999999999999877654 4567888999999999999753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.3e-36  Score=315.63  Aligned_cols=333  Identities=19%  Similarity=0.193  Sum_probs=259.2

Q ss_pred             CCCCCCCCCCCCCCcc----cceeecCC----------------CCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEc
Q 036049           35 TMASWKPEEGNVDCCS----WDGVHCNK----------------NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNL   94 (517)
Q Consensus        35 ~~~~w~~~~~~~~~C~----w~gv~c~~----------------~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L   94 (517)
                      .+++|..   ..+||.    |.++.|..                ...+++.|++++|.+....+.  .+..+++|++|+|
T Consensus         8 ~l~~~~~---~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~--~~~~l~~L~~L~L   82 (597)
T 3oja_B            8 NVKPRQP---EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNL   82 (597)
T ss_dssp             ---CCCS---EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTH--HHHHCCCCSEEEC
T ss_pred             cccCCCC---CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHH--HHccCCCCcEEEC
Confidence            4678876   456664    66655531                014578889999988765544  6788999999999


Q ss_pred             CCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccc
Q 036049           95 ALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNF  173 (517)
Q Consensus        95 s~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l  173 (517)
                      ++|.+++  +++ .+..+. +|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+
T Consensus        83 ~~n~l~~--~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           83 NDLQIEE--IDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             TTSCCCE--ECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCC--CChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            9999987  444 555665 999999999999887788889999999999999999966666678999999999999999


Q ss_pred             cccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 036049          174 SGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFS  253 (517)
Q Consensus       174 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~  253 (517)
                      ++..|..|.++++|++|++++|.+++       ++  +..  +++|+.|++++|.++++                 ...+
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~--~~~--l~~L~~L~l~~n~l~~l-----------------~~~~  211 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNRLTH-------VD--LSL--IPSLFHANVSYNLLSTL-----------------AIPI  211 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSCCSB-------CC--GGG--CTTCSEEECCSSCCSEE-----------------ECCT
T ss_pred             CCCChhhhhcCCcCcEEECcCCCCCC-------cC--hhh--hhhhhhhhcccCccccc-----------------cCCc
Confidence            98888889999999999999998873       22  222  78899999999988875                 2345


Q ss_pred             cccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhC
Q 036049          254 KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIIL  333 (517)
Q Consensus       254 ~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  333 (517)
                      +|+.|++++|.+. .+|...   ..+|+.|+++++....                          ......++.|+.|++
T Consensus       212 ~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--------------------------~~~l~~l~~L~~L~L  261 (597)
T 3oja_B          212 AVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--------------------------TAWLLNYPGLVEVDL  261 (597)
T ss_dssp             TCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--------------------------CGGGGGCTTCSEEEC
T ss_pred             hhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--------------------------ChhhccCCCCCEEEC
Confidence            7888899988887 444322   2567777777633221                          011223577999999


Q ss_pred             CCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049          334 SNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       334 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                      ++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++.
T Consensus       262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          262 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             CSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             CCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc
Confidence            9999998888899999999999999999985 5777778999999999999998 6788888899999999999999876


Q ss_pred             CCCCCcCCccCCCcccCCCCCCCC
Q 036049          414 IPQGKQFATFDNTSFDGNSGLCGK  437 (517)
Q Consensus       414 ~p~~~~~~~l~~~~~~~Np~~c~~  437 (517)
                      .  ...+..+..+++++||+.|++
T Consensus       340 ~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          340 K--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             C--hhhcCCCCEEEeeCCCCCChh
Confidence            4  345778888999999998864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-35  Score=315.76  Aligned_cols=332  Identities=17%  Similarity=0.211  Sum_probs=267.9

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC-CCCCCCchhhhhc------ccCCcEEEccCCCCcccCCc-
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND-FNSSEIQPEIINL------SCSLKLLDLRSCGFWGKVPH-  131 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~------~~~L~~L~Ls~n~l~~~~p~-  131 (517)
                      ..+++.|+|++|.+.+.+|.  .+.++++|++|++++|+ +++..+|..+..+      . +|++|++++|.+. .+|. 
T Consensus       248 l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~  323 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVE  323 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCT--TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCH
T ss_pred             cCCCCEEEecCCcCCccChH--HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCch
Confidence            35799999999999999988  99999999999999998 8761288888876      5 9999999999996 8898 


Q ss_pred             -cCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCc-ccccccccccCcceecccccccc
Q 036049          132 -SIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTE-LVVLDMAQNSYGGTMEIEGKVHK  209 (517)
Q Consensus       132 -~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~~  209 (517)
                       .|+++++|++|++++|.+++.+| .|+.+++|++|++++|.++ .+|..+.++++ |++|++++|.++       .+|.
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-------~lp~  394 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-------YIPN  394 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-------SCCS
T ss_pred             hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-------ccch
Confidence             89999999999999999998899 9999999999999999999 88889999999 999999999987       6777


Q ss_pred             ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccc
Q 036049          210 WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR  289 (517)
Q Consensus       210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~  289 (517)
                      .+....+++|++|++++|.+++..+...-     +.......+++|++|++++|.++ .+|...+..+++|+.|+++++.
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFD-----PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSC-----TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhc-----ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC
Confidence            66652345899999999999986554200     00111126779999999999998 8898888889999999999854


Q ss_pred             ccccccCCCcccc--------hhhhccceeeeecCccccCC-CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeC---
Q 036049          290 YLQDVLSPSGKLL--------MTTYDYLLTMNIKGRMMAYN-KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNL---  357 (517)
Q Consensus       290 ~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L---  357 (517)
                      .. ..........        ......+....+...+..+. ..++.|+.|++++|.+++ +|..+..+++|+.|+|   
T Consensus       469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred             CC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence            33 1111111100        11111222222332333332 256789999999999997 8999999999999999   


Q ss_pred             ---cCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049          358 ---HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       358 ---s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  415 (517)
                         ++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.|++++|++....+
T Consensus       547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             cccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence               56788889999999999999999999999 47888766  899999999999886544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.5e-34  Score=304.81  Aligned_cols=356  Identities=20%  Similarity=0.204  Sum_probs=269.7

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      +..+++|+|++|.+++..+.  .|.++++|++|+|++|.+... .|..+..+. +|++|++++|.+.+..|..|+++++|
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             CCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCcc-ccCeeeCCCCcccccChhhhcccccc
Confidence            35799999999999988777  899999999999999999873 455666776 99999999999988889999999999


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      ++|++++|.+++..+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++      ..+..+..  +++|
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~--l~~L  179 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY------LSKEDMSS--LQQA  179 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE------ECHHHHHT--TTTC
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc------cChhhhhh--hccc
Confidence            999999999998778889999999999999999997554556669999999999999873      33444555  8888


Q ss_pred             C--eEeccCCcccccCCCCCCC--------CC------------------------------------------------
Q 036049          220 N--ALNLSHNLLTGFDQHLVLL--------PG------------------------------------------------  241 (517)
Q Consensus       220 ~--~L~Ls~n~l~~~~~~~~ll--------~~------------------------------------------------  241 (517)
                      +  +|++++|.+++.++...-.        .+                                                
T Consensus       180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L  259 (606)
T 3t6q_A          180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI  259 (606)
T ss_dssp             CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred             ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence            8  8899999888776543110        00                                                


Q ss_pred             ----C-C--CCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeee
Q 036049          242 ----N-N--EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNI  314 (517)
Q Consensus       242 ----~-~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (517)
                          . +  ..+..+..+++|++|++++|.++ .+|.. +..+++|+.|+++++.......     ........+..+.+
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQ-----ISASNFPSLTHLSI  332 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGG-----GCGGGCTTCSEEEC
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCch-----hhhhccCcCCEEEC
Confidence                0 0  01122556677777777777776 66643 5666777777776643221100     00111122222222


Q ss_pred             cCc------cccCCCchhhhhhhhCCCCCCcccC--cccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcc
Q 036049          315 KGR------MMAYNKIPDILAGIILSNKSFDGAI--PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF  386 (517)
Q Consensus       315 ~~~------~~~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  386 (517)
                      .+.      ........+.|+.|++++|.+.+..  +..+..+++|++|++++|++.+..|..|..+++|++|++++|++
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            221      1222344678999999999998765  67788899999999999999888888899999999999999999


Q ss_pred             cccCccc-cccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCC
Q 036049          387 SGRIPQQ-LVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGL  434 (517)
Q Consensus       387 ~~~~p~~-l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~  434 (517)
                      ++..+.. +..+++|++|++++|.+++.+|.. ..++.++.+++++|+..
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence            8776544 888999999999999999887764 46788888899998753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6e-35  Score=318.22  Aligned_cols=324  Identities=27%  Similarity=0.365  Sum_probs=198.1

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCC-CCCEEEcCCCCCCCCCCchhhhh--cccCCcEEEccCCCCcccCCccCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLV-HLEWLNLALNDFNSSEIQPEIIN--LSCSLKLLDLRSCGFWGKVPHSIGNFT  137 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~l~  137 (517)
                      .+++.|++++|.+++.+|.  .+.+++ +|++|++++|.+++. +|+.+..  +. +|++|++++|.+.+.+|..|++++
T Consensus       343 ~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~-~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~l~~l~  418 (768)
T 3rgz_A          343 RGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGP-ILPNLCQNPKN-TLQELYLQNNGFTGKIPPTLSNCS  418 (768)
T ss_dssp             TTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSEEEEE-CCTTTTCSTTC-CCCEEECCSSEEEEECCGGGGGCT
T ss_pred             CCCCEEeCcCCccCccccH--HHHhhhcCCcEEEccCCCcCCC-cChhhhhcccC-CccEEECCCCccccccCHHHhcCC
Confidence            4677777777777766666  666665 677777776666543 4444433  33 566666666666555666666666


Q ss_pred             CCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCC
Q 036049          138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQ  217 (517)
Q Consensus       138 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~  217 (517)
                      +|++|++++|.+++.+|..|+.+++|++|++++|.+++.+|..+..+++|++|++++|++++      .+|..+..  ++
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~------~~p~~l~~--l~  490 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG------EIPSGLSN--CT  490 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS------CCCGGGGG--CT
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC------cCCHHHhc--CC
Confidence            66666666666665566666666666666666666665566666666666666666665552      44444444  55


Q ss_pred             CCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccccccc--
Q 036049          218 NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVL--  295 (517)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~--  295 (517)
                      +|++|++++|++++..+.            .+..+++|++|++++|++++.+|. .+..+++|+.|+++++.......  
T Consensus       491 ~L~~L~L~~N~l~~~~p~------------~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPK------------WIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             TCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCCGG
T ss_pred             CCCEEEccCCccCCcCCh------------HHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCChH
Confidence            555555555555544332            233444555555555555444442 24444444444444422110000  


Q ss_pred             -CC--------------------------------------------------------------Ccc-----cchhhhc
Q 036049          296 -SP--------------------------------------------------------------SGK-----LLMTTYD  307 (517)
Q Consensus       296 -~~--------------------------------------------------------------~~~-----~~~~~~~  307 (517)
                       ..                                                              ..+     .......
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L  637 (768)
T 3rgz_A          558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL  637 (768)
T ss_dssp             GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred             HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence             00                                                              000     0000011


Q ss_pred             cceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049          308 YLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS  387 (517)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  387 (517)
                      .+....+.+..+.....++.|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+|++|+++
T Consensus       638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            11112222333333445678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccccccCCCCCEEeccCCcc
Q 036049          388 GRIPQQLVELTFLAFFNVSDNYL  410 (517)
Q Consensus       388 ~~~p~~l~~l~~L~~L~l~~N~l  410 (517)
                      |.+|.. ..+..+....+.+|+-
T Consensus       718 g~iP~~-~~~~~~~~~~~~gN~~  739 (768)
T 3rgz_A          718 GPIPEM-GQFETFPPAKFLNNPG  739 (768)
T ss_dssp             EECCSS-SSGGGSCGGGGCSCTE
T ss_pred             ccCCCc-hhhccCCHHHhcCCch
Confidence            999964 2344455556777763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.5e-34  Score=310.06  Aligned_cols=358  Identities=19%  Similarity=0.174  Sum_probs=247.4

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCC--CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVH--LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTR  138 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  138 (517)
                      .+++.|++++|.+++..+.  .+..++.  |++|++++|.+++. .+..+..+. +|++|++++|.+.+..|..|.++++
T Consensus       222 ~~L~~L~L~~n~l~~~~~~--~~~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~  297 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNT--TFLGLKWTNLTMLDLSYNNLNVV-GNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFN  297 (680)
T ss_dssp             SCCCEEECTTSCCCEECTT--TTGGGGGSCCCEEECTTSCCCEE-CTTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTT
T ss_pred             ccccEEEccCCcccccChh--HhhccCcCCCCEEECCCCCcCcc-CcccccCcc-cccEeeCCCCccCccChhhhcCCCC
Confidence            4678888888888887776  7777754  99999999998763 334455555 9999999999998888888999999


Q ss_pred             CcEEEccCCcccc-----cccc----cccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccccc
Q 036049          139 LQFLYLGFNNFSG-----DLLG----SIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK  209 (517)
Q Consensus       139 L~~L~Ls~n~i~~-----~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  209 (517)
                      |++|++++|...+     .+|.    .|..+++|++|++++|.+++..+..|.++++|++|++++|.+...     .++.
T Consensus       298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-----~l~~  372 (680)
T 1ziw_A          298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR-----TLTN  372 (680)
T ss_dssp             CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC-----EECT
T ss_pred             ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh-----hcch
Confidence            9999998875543     2232    678889999999999999888888888999999999988875421     1221


Q ss_pred             ccc-cccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcc
Q 036049          210 WLL-DPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASEL  288 (517)
Q Consensus       210 ~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~  288 (517)
                      ..+ ....++|+.|++++|++++..+.            .+..+++|++|++++|.+.+.+|...+..+++|+.++++++
T Consensus       373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          373 ETFVSLAHSPLHILNLTKNKISKIESD------------AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             TTTGGGTTSCCCEEECTTSCCCEECTT------------TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred             hhhcccccCcCceEECCCCCCCeEChh------------hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence            111 10135677777777777765443            34556666777777776665566555666666666666654


Q ss_pred             cccccccC---------------------CCcccchhhhccce-----eeeecCccccCCCchhhhhhhhCCCCCCcccC
Q 036049          289 RYLQDVLS---------------------PSGKLLMTTYDYLL-----TMNIKGRMMAYNKIPDILAGIILSNKSFDGAI  342 (517)
Q Consensus       289 ~~l~~~~~---------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  342 (517)
                      ........                     ...+........+.     ...+.+.........+.|+.|++++|.+++..
T Consensus       441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW  520 (680)
T ss_dssp             SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred             CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence            32110000                     00000001111111     12222333333444677888888888887532


Q ss_pred             c--------ccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccC
Q 036049          343 P--------ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI  414 (517)
Q Consensus       343 p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  414 (517)
                      +        ..+..+++|+.|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++.+
T Consensus       521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            1        23677888888888888888444456888999999999999998666667788899999999999999877


Q ss_pred             CCCC--cCCccCCCcccCCCCCCCCCC
Q 036049          415 PQGK--QFATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       415 p~~~--~~~~l~~~~~~~Np~~c~~~~  439 (517)
                      |...  .+..+..+++.+|||.|+|+.
T Consensus       601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          601 KKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             hhHhcccccccCEEEccCCCcccCCcc
Confidence            6542  467888999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.9e-34  Score=313.02  Aligned_cols=353  Identities=14%  Similarity=0.177  Sum_probs=275.0

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC-CCCCCCchhhhhcc------cCCcEEEccCCCCcccCCc-
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND-FNSSEIQPEIINLS------CSLKLLDLRSCGFWGKVPH-  131 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~------~~L~~L~Ls~n~l~~~~p~-  131 (517)
                      ..+++.|+|++|.+.+.+|.  .+.++++|++|+|++|+ +++..+|..+..+.      ++|++|+|++|.+. .+|. 
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~--~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~  566 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPD--FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS  566 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCG--GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred             CCCCCEEECcCCCCCccChH--HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence            35799999999999999887  99999999999999998 87512787776553      48999999999996 8898 


Q ss_pred             -cCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCc-ccccccccccCcceecccccccc
Q 036049          132 -SIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTE-LVVLDMAQNSYGGTMEIEGKVHK  209 (517)
Q Consensus       132 -~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~~  209 (517)
                       .|+++++|++|+|++|.++ .+| .|+.+++|++|+|++|.++ .+|..+.++++ |++|++++|.++       .+|.
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-------~lp~  636 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-------YIPN  636 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-------SCCS
T ss_pred             hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-------cCch
Confidence             8999999999999999999 788 8999999999999999999 88989999999 999999999987       6776


Q ss_pred             ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccc
Q 036049          210 WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR  289 (517)
Q Consensus       210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~  289 (517)
                      .+.....++|+.|++++|.+++..+..       +.......+++|+.|++++|.++ .+|...+..+++|+.|+++++.
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l-------~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNI-------SCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSC-------SSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred             hhhccccCCCCEEECcCCcCCCccccc-------hhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence            666522345999999999999865542       11111124568999999999998 8998888899999999998853


Q ss_pred             ccccccCCCcccc--------hhhhccceeeeecCccccCC-CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcC-
Q 036049          290 YLQDVLSPSGKLL--------MTTYDYLLTMNIKGRMMAYN-KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHN-  359 (517)
Q Consensus       290 ~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-  359 (517)
                      .- ..........        ......+....+...+..+. ..++.|+.|+|++|.+++ +|..+..+++|+.|+|++ 
T Consensus       709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred             CC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence            32 1111111100        11111222222232333332 246789999999999997 788999999999999976 


Q ss_pred             -----ccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCC-cCCccCCCcccCCCC
Q 036049          360 -----NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGK-QFATFDNTSFDGNSG  433 (517)
Q Consensus       360 -----N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~-~~~~l~~~~~~~Np~  433 (517)
                           |++.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+... .........+.+|+.
T Consensus       787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence                 788889999999999999999999999 58888765  699999999999987655321 122234456677776


Q ss_pred             CC--CCC
Q 036049          434 LC--GKP  438 (517)
Q Consensus       434 ~c--~~~  438 (517)
                      .+  +|+
T Consensus       864 ~~I~gC~  870 (876)
T 4ecn_A          864 QDIRGCD  870 (876)
T ss_dssp             SEEESCG
T ss_pred             cccCCCC
Confidence            55  554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.7e-34  Score=301.58  Aligned_cols=337  Identities=20%  Similarity=0.193  Sum_probs=225.2

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .++++|+|++|.+++..+.  .|.++++|++|+|++|.+++. .|..+..+. +|++|++++|.+. .+|..  .+++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~--~l~~L~  124 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQ-DLEYLDVSHNRLQ-NISCC--PMASLR  124 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCT-TCCEEECTTSCCC-EECSC--CCTTCS
T ss_pred             CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCC-CCCEEECCCCcCC-ccCcc--ccccCC
Confidence            5678888888888766655  777888888888888887762 244455555 8888888888874 56654  678888


Q ss_pred             EEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCcc--cccccccccC--cceecccccccccccc--
Q 036049          141 FLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTEL--VVLDMAQNSY--GGTMEIEGKVHKWLLD--  213 (517)
Q Consensus       141 ~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~N~l--~~~~~~~~~~~~~~~~--  213 (517)
                      +|++++|.+++ ..|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++.      .|..+..  
T Consensus       125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~------~~~~l~~l~  195 (562)
T 3a79_B          125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG------ETESLQIPN  195 (562)
T ss_dssp             EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS------SCCEEEECC
T ss_pred             EEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc------CcccccccC
Confidence            88888888875 2356788888888888888877642   34444444  7777777766  221      1111100  


Q ss_pred             -----------------------------------------------------------------------------ccC
Q 036049          214 -----------------------------------------------------------------------------PNM  216 (517)
Q Consensus       214 -----------------------------------------------------------------------------~~l  216 (517)
                                                                                                   ...
T Consensus       196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~  275 (562)
T 3a79_B          196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP  275 (562)
T ss_dssp             EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred             cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence                                                                                         001


Q ss_pred             CCCCeEeccCCcccccCCCCCC---------------------CC-------------------CCCCCCCC-CCCCCcc
Q 036049          217 QNLNALNLSHNLLTGFDQHLVL---------------------LP-------------------GNNEEPRT-GCGFSKL  255 (517)
Q Consensus       217 ~~L~~L~Ls~n~l~~~~~~~~l---------------------l~-------------------~~~~~~~~-~~~l~~L  255 (517)
                      ++|++|++++|.+++..+....                     +|                   +....+.. ...+++|
T Consensus       276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L  355 (562)
T 3a79_B          276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF  355 (562)
T ss_dssp             SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred             ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCc
Confidence            2566666666666643322110                     00                   00000000 1455666


Q ss_pred             cEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCC
Q 036049          256 RIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSN  335 (517)
Q Consensus       256 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  335 (517)
                      ++|++++|.+++.+| ..+..+++|+.|+++++..-...                      .........+.|+.|++++
T Consensus       356 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          356 TFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFF----------------------KVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             CEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTT----------------------HHHHTTTTCTTCCEEECTT
T ss_pred             eEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcc----------------------cchhhhcCCCCCCEEECCC
Confidence            777777776665444 33566666666666653211000                      0011123367899999999


Q ss_pred             CCCcccCcc-cccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccC
Q 036049          336 KSFDGAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI  414 (517)
Q Consensus       336 n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  414 (517)
                      |.+++.+|. .+..+++|++|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|++++|++++.+
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence            999985554 588899999999999999887776654  79999999999999 78877779999999999999999665


Q ss_pred             CC-CCcCCccCCCcccCCCCCCCCCC
Q 036049          415 PQ-GKQFATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       415 p~-~~~~~~l~~~~~~~Np~~c~~~~  439 (517)
                      +. ...+..+..+++++||+.|+|+.
T Consensus       490 ~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             HHHHhcCCCCCEEEecCCCcCCCcch
Confidence            55 45778888999999999998754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.4e-34  Score=294.07  Aligned_cols=331  Identities=18%  Similarity=0.132  Sum_probs=252.2

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCcc--CCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHS--IGNFT  137 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~--~~~l~  137 (517)
                      ..+++.|+|++|.+.+.++. ..|.++++|++|+|++|.++.. .|..+..+. +|++|++++|.+.+..|..  |+.++
T Consensus        53 l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           53 LQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQFLQL-ETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             CTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTTCEE-CTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred             CccccEEECcCCcccceECc-ccccccccCCEEeCCCCccCcc-ChhhccCcc-cCCEEeCCCCCCCccccCcccccCcc
Confidence            46899999999999755542 2799999999999999999874 466677777 9999999999997755554  99999


Q ss_pred             CCcEEEccCCccccccccc-ccCCccccEEEcccccccccCchhhhcC--CcccccccccccCcceeccc--cccccccc
Q 036049          138 RLQFLYLGFNNFSGDLLGS-IGNLRSLEAIYMSKCNFSGQITSSLRNL--TELVVLDMAQNSYGGTMEIE--GKVHKWLL  212 (517)
Q Consensus       138 ~L~~L~Ls~n~i~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~l~~N~l~~~~~~~--~~~~~~~~  212 (517)
                      +|++|++++|.+++..|.. |.++++|++|++++|.+++..+..+..+  .+|+.|++++|.+.+.....  ......+.
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  209 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF  209 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence            9999999999999887876 8999999999999999998888888776  67777888877776321100  00001122


Q ss_pred             cccCCCCCeEeccCCcccccCCCC---------------------------CCCCCCCCCCCCCCCCCcccEEEccCCcC
Q 036049          213 DPNMQNLNALNLSHNLLTGFDQHL---------------------------VLLPGNNEEPRTGCGFSKLRIIDLSDNRF  265 (517)
Q Consensus       213 ~~~l~~L~~L~Ls~n~l~~~~~~~---------------------------~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (517)
                      .  +++|++|++++|.+++..+..                           .-+++...........++|++|++++|.+
T Consensus       210 ~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  287 (455)
T 3v47_A          210 K--NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI  287 (455)
T ss_dssp             T--TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred             c--cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence            2  566777777777665422110                           00000001111111346899999999999


Q ss_pred             CCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCccc
Q 036049          266 TGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPAS  345 (517)
Q Consensus       266 ~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  345 (517)
                      ++..| ..+..+++|+.|+++++....                        .........+.|+.|++++|.+++..|..
T Consensus       288 ~~~~~-~~~~~l~~L~~L~Ls~n~l~~------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          288 FALLK-SVFSHFTDLEQLTLAQNEINK------------------------IDDNAFWGLTHLLKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             CEECT-TTTTTCTTCCEEECTTSCCCE------------------------ECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             cccch-hhcccCCCCCEEECCCCcccc------------------------cChhHhcCcccCCEEECCCCccCCcChhH
Confidence            85444 568889999999988743221                        11112223678999999999999888999


Q ss_pred             ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcC
Q 036049          346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQF  420 (517)
Q Consensus       346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  420 (517)
                      +..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|....+
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            999999999999999999888999999999999999999999777777899999999999999999999865433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=301.26  Aligned_cols=112  Identities=28%  Similarity=0.320  Sum_probs=93.5

Q ss_pred             hhhhhhhhCCCCCCcccCcc-cccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEE
Q 036049          325 PDILAGIILSNKSFDGAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF  403 (517)
Q Consensus       325 ~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  403 (517)
                      ++.|+.|++++|.+++.+|. .+..+++|+.|++++|++++..|..+.  ++|++|+|++|+++ .+|..+..+++|++|
T Consensus       373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            56788889999998875665 377788999999999998877776654  78999999999998 788888899999999


Q ss_pred             eccCCcccccCCC-CCcCCccCCCcccCCCCCCCCCC
Q 036049          404 NVSDNYLTGLIPQ-GKQFATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       404 ~l~~N~l~~~~p~-~~~~~~l~~~~~~~Np~~c~~~~  439 (517)
                      ++++|++++.++. ...+..+..+++++||+.|+|+.
T Consensus       450 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            9999999965554 35677888999999999998753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.4e-33  Score=298.55  Aligned_cols=134  Identities=19%  Similarity=0.147  Sum_probs=82.4

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .++++|+|++|.+++..+.  .|.++++|++|+|++|.+++. .|..+..+. +|++|++++|.+.+..+..|+++++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhccc-CcCEEECCCCccCccChhhhccCCCCC
Confidence            4667777777777655544  566667777777777666653 344444444 666666666666443334566666666


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      +|++++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.++
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            6666666666555556666666666666666666555555555666666666555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.1e-33  Score=298.83  Aligned_cols=350  Identities=21%  Similarity=0.144  Sum_probs=250.8

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      ..++++|+|++|.+++..+.  +|.++++|++|+|++|.++.. .|..+..+. +|++|++++|.+.+..+..|+++++|
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLT-SLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCCC-CTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             CccCcEEeCCCCcccccCHH--HhhchhhcCEeECCCCccccc-ChhhcCCcc-cCCEEEccCCccccccccccCCCCCC
Confidence            46899999999999887777  889999999999999999873 466676776 99999999999977777889999999


Q ss_pred             cEEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCc---------------------------ccccc
Q 036049          140 QFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTE---------------------------LVVLD  191 (517)
Q Consensus       140 ~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---------------------------L~~L~  191 (517)
                      ++|++++|.+++ .+|..|+++++|++|++++|.+++..+..|..+++                           |++|+
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~  210 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT  210 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence            999999999986 56888999999999999999888766655544333                           33333


Q ss_pred             cccccCccee----------------------------------------------------ccc---------------
Q 036049          192 MAQNSYGGTM----------------------------------------------------EIE---------------  204 (517)
Q Consensus       192 l~~N~l~~~~----------------------------------------------------~~~---------------  204 (517)
                      +++|.+.+..                                                    .+.               
T Consensus       211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L  290 (606)
T 3vq2_A          211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM  290 (606)
T ss_dssp             EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred             ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence            3333321000                                                    000               


Q ss_pred             -----------------------------cccc--------------------cccccccCCCCCeEeccCCcccccC--
Q 036049          205 -----------------------------GKVH--------------------KWLLDPNMQNLNALNLSHNLLTGFD--  233 (517)
Q Consensus       205 -----------------------------~~~~--------------------~~~~~~~l~~L~~L~Ls~n~l~~~~--  233 (517)
                                                   +.+|                    ..+.  .+++|++|++++|.+++..  
T Consensus       291 ~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~  368 (606)
T 3vq2_A          291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCC  368 (606)
T ss_dssp             EEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCC--CCTTCCEEECCSSCEEEEEEC
T ss_pred             EecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhc--cCCCCCEEECcCCccCCCcch
Confidence                                         0111                    0112  2678888888888887652  


Q ss_pred             CCC-----CC----CCCC--CCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccc
Q 036049          234 QHL-----VL----LPGN--NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLL  302 (517)
Q Consensus       234 ~~~-----~l----l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  302 (517)
                      +..     .+    +.++  ...+..+..+++|++|++++|++.+..|...+..+++|+.|+++++..............
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  448 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT  448 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence            110     00    1111  011234577888999999999888666656688888899988887553321111111111


Q ss_pred             hhhhccceeeeecC-ccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049          303 MTTYDYLLTMNIKG-RMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL  381 (517)
Q Consensus       303 ~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  381 (517)
                      ......+....+.+ ........++.|+.|++++|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            11111222222222 12333455789999999999999999999999999999999999999888999999999999999


Q ss_pred             CCCcccccCccccccCC-CCCEEeccCCcccccCCC
Q 036049          382 SNNKFSGRIPQQLVELT-FLAFFNVSDNYLTGLIPQ  416 (517)
Q Consensus       382 s~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~  416 (517)
                      ++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus       529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999 6777799987 599999999999987764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=3.7e-34  Score=280.22  Aligned_cols=282  Identities=18%  Similarity=0.218  Sum_probs=168.1

Q ss_pred             CchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCC-CCCCCCCcccceeecCC--------CCCcEEEEEcCCCCcee
Q 036049            5 CHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKP-EEGNVDCCSWDGVHCNK--------NTGHVVKLNLSHSCLFG   75 (517)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~C~w~gv~c~~--------~~~~l~~L~Ls~n~l~~   75 (517)
                      +..+|+.||++||+++..+. .       ..++.|.. .....++|.|.|+.|..        ...+|+.|+|++|.++ 
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~-~-------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-   94 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADR-N-------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-   94 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCC-T-------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-
T ss_pred             cCchHHHHHHHHHHhccCCc-h-------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-
Confidence            55689999999999875333 1       24577831 00157899999999942        2245555555555554 


Q ss_pred             eeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccc
Q 036049           76 SINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLG  155 (517)
Q Consensus        76 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~  155 (517)
                      .+|.  .+.++++|++|+|++|.++.  +|..+..+. +|++|+|++|.+. .+|..|+++++|++|++++|++.+.+|.
T Consensus        95 ~lp~--~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A           95 QFPD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             SCCS--CGGGGTTCSEEEEESSCCCC--CCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             hcCh--hhhhCCCCCEEECCCCCccc--hhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence            3333  44455555555555555542  454444444 5555555555553 4455555555555555555544444444


Q ss_pred             cccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCC
Q 036049          156 SIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQH  235 (517)
Q Consensus       156 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  235 (517)
                      .+...               ..+..|.++++|++|++++|.++       .+|..+..  +++|++|++++|.++++++.
T Consensus       169 ~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-------~lp~~l~~--l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          169 PLAST---------------DASGEHQGLVNLQSLRLEWTGIR-------SLPASIAN--LQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             CSEEE---------------C-CCCEEESTTCCEEEEEEECCC-------CCCGGGGG--CTTCCEEEEESSCCCCCCGG
T ss_pred             hHhhc---------------cchhhhccCCCCCEEECcCCCcC-------cchHhhcC--CCCCCEEEccCCCCCcCchh
Confidence            43320               00011223666666666666665       45555555  66777777777776654332


Q ss_pred             CCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeec
Q 036049          236 LVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIK  315 (517)
Q Consensus       236 ~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                                   +..+++|++|++++|.+.+.+|                                             
T Consensus       225 -------------l~~l~~L~~L~Ls~n~~~~~~p---------------------------------------------  246 (328)
T 4fcg_A          225 -------------IHHLPKLEELDLRGCTALRNYP---------------------------------------------  246 (328)
T ss_dssp             -------------GGGCTTCCEEECTTCTTCCBCC---------------------------------------------
T ss_pred             -------------hccCCCCCEEECcCCcchhhhH---------------------------------------------
Confidence                         3566777777777777664433                                             


Q ss_pred             CccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccc
Q 036049          316 GRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV  395 (517)
Q Consensus       316 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  395 (517)
                                                  ..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.
T Consensus       247 ----------------------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          247 ----------------------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             ----------------------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             ----------------------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence                                        2345566677777777766667777777777777777777777777777777


Q ss_pred             cCCCCCEEeccCCccc
Q 036049          396 ELTFLAFFNVSDNYLT  411 (517)
Q Consensus       396 ~l~~L~~L~l~~N~l~  411 (517)
                      .+++|+.+++..|.+.
T Consensus       299 ~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          299 QLPANCIILVPPHLQA  314 (328)
T ss_dssp             GSCTTCEEECCGGGSC
T ss_pred             hccCceEEeCCHHHHH
Confidence            7777777777666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.5e-32  Score=273.35  Aligned_cols=309  Identities=18%  Similarity=0.151  Sum_probs=253.0

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh-hhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE-IINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      .++++|+|++|.+++..+.  .|..+++|++|++++|.++.  +++. +..+. +|++|++++|.+....+..|.++++|
T Consensus        69 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRY--LPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCC--CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCc--CCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCC
Confidence            5799999999999987776  89999999999999999987  5544 55666 99999999999965444557999999


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      ++|++++|.+++..+..|..+++|++|++++|.+++.   .+..+++|++|++++|.+++       ++.      .++|
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-------~~~------~~~L  207 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-------LAI------PIAV  207 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-------EEC------CSSC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-------cCC------CCcc
Confidence            9999999999988888899999999999999999854   36678999999999998873       221      5789


Q ss_pred             CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049          220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG  299 (517)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  299 (517)
                      ++|++++|.++..+..               .+++|+.|++++|.+++ .  ..+..+++|+.|+++++....       
T Consensus       208 ~~L~l~~n~l~~~~~~---------------~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~-------  262 (390)
T 3o6n_A          208 EELDASHNSINVVRGP---------------VNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNELEK-------  262 (390)
T ss_dssp             SEEECCSSCCCEEECC---------------CCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCE-------
T ss_pred             eEEECCCCeeeecccc---------------ccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCcCCC-------
Confidence            9999999999887432               35789999999999984 3  357888999999998843221       


Q ss_pred             ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049          300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL  379 (517)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  379 (517)
                                       ........++.|+.|++++|.+++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|
T Consensus       263 -----------------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          263 -----------------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  323 (390)
T ss_dssp             -----------------EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             -----------------cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence                             011112236789999999999985 5667788999999999999998 677778899999999


Q ss_pred             eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049          380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      +|++|+++.. +  +..+++|+.|++++|++++.... ..+..+....+.+++..|.++
T Consensus       324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             ECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence            9999999854 3  67889999999999999875332 345666677788888888754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.1e-32  Score=267.19  Aligned_cols=303  Identities=21%  Similarity=0.278  Sum_probs=249.5

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      ..++++|+++++.+... +   .+..+++|++|++++|.++.  +++ +..+. +|++|++++|.+.. ++ .|..+++|
T Consensus        43 l~~L~~L~l~~~~i~~~-~---~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~-~L~~L~L~~n~i~~-~~-~~~~l~~L  112 (347)
T 4fmz_A           43 LESITKLVVAGEKVASI-Q---GIEYLTNLEYLNLNGNQITD--ISP-LSNLV-KLTNLYIGTNKITD-IS-ALQNLTNL  112 (347)
T ss_dssp             HTTCSEEECCSSCCCCC-T---TGGGCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCC-CG-GGTTCTTC
T ss_pred             cccccEEEEeCCccccc-h---hhhhcCCccEEEccCCcccc--chh-hhcCC-cCCEEEccCCcccC-ch-HHcCCCcC
Confidence            35799999999998743 2   58889999999999999987  665 66666 99999999999954 44 69999999


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      ++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+       ++. +..  +++|
T Consensus       113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-------~~~-~~~--l~~L  179 (347)
T 4fmz_A          113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-------VTP-IAN--LTDL  179 (347)
T ss_dssp             SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-------CGG-GGG--CTTC
T ss_pred             CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-------chh-hcc--CCCC
Confidence            9999999999954 43 8999999999999997664444 48999999999999999873       332 444  8999


Q ss_pred             CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049          220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG  299 (517)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  299 (517)
                      ++|++++|.+++..+              +..+++|+.|++++|.+.+ ++.  +..+++|+.|+++++.....      
T Consensus       180 ~~L~l~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~------  236 (347)
T 4fmz_A          180 YSLSLNYNQIEDISP--------------LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDL------  236 (347)
T ss_dssp             SEEECTTSCCCCCGG--------------GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC------
T ss_pred             CEEEccCCccccccc--------------ccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCC------
Confidence            999999999987643              3678999999999999984 443  77888999999887432210      


Q ss_pred             ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049          300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL  379 (517)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  379 (517)
                                        ..  ....+.|+.|++++|.+++.  ..+..+++|+.|++++|++++ + ..+..+++|++|
T Consensus       237 ------------------~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L  292 (347)
T 4fmz_A          237 ------------------SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL  292 (347)
T ss_dssp             ------------------GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             ------------------cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence                              00  22367899999999999863  468899999999999999985 3 458899999999


Q ss_pred             eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCC
Q 036049          380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSG  433 (517)
Q Consensus       380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~  433 (517)
                      ++++|++++..|..+..+++|++|++++|++++.+| ...++.++.+++++|+.
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            999999998888999999999999999999998877 66788899999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=290.71  Aligned_cols=342  Identities=20%  Similarity=0.202  Sum_probs=222.9

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCc-hhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQ-PEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      .++++|+|++|.+++..+.  .|.++++|++|+|++|.++.  ++ ..+..+. +|++|++++|.+.+..+..|+++++|
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQS--LALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             SSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCE--ECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             CCceEEECCCCcCCccCcc--cccCchhCCEEeCcCCcCCc--cCHhhhcCcc-ccccccccccccccCCCccccccccc
Confidence            5677777777777766555  67777777777777777765  33 3344444 77777777777755444456777777


Q ss_pred             cEEEccCCcccc-cccccccCCccccEEEcccccccccCchhhh------------------------------------
Q 036049          140 QFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLR------------------------------------  182 (517)
Q Consensus       140 ~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~------------------------------------  182 (517)
                      ++|++++|.+++ .+|..|+++++|++|++++|.+++..+..+.                                    
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~  206 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT  206 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence            777777777765 3566677777777777777666544333322                                    


Q ss_pred             -------------------------------------------------------------------------cCCcccc
Q 036049          183 -------------------------------------------------------------------------NLTELVV  189 (517)
Q Consensus       183 -------------------------------------------------------------------------~l~~L~~  189 (517)
                                                                                               .+++|++
T Consensus       207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~  286 (570)
T 2z63_A          207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS  286 (570)
T ss_dssp             EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred             cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence                                                                                     2344444


Q ss_pred             cccccccCcceeccc---------------ccccccc------------------ccccCCCCCeEeccCCcccccCCCC
Q 036049          190 LDMAQNSYGGTMEIE---------------GKVHKWL------------------LDPNMQNLNALNLSHNLLTGFDQHL  236 (517)
Q Consensus       190 L~l~~N~l~~~~~~~---------------~~~~~~~------------------~~~~l~~L~~L~Ls~n~l~~~~~~~  236 (517)
                      |++++|.+.+.....               ..+|...                  ....+++|++|++++|.+++.... 
T Consensus       287 L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-  365 (570)
T 2z63_A          287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC-  365 (570)
T ss_dssp             EEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE-
T ss_pred             EEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccc-
Confidence            444444443211000               0111100                  002378999999999998865310 


Q ss_pred             CCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCC-Ccccchhhhccceeeeec
Q 036049          237 VLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSP-SGKLLMTTYDYLLTMNIK  315 (517)
Q Consensus       237 ~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~  315 (517)
                               +..+..+++|++|++++|.+. .+|.. +..+++|+.|+++++......... ...........+....+.
T Consensus       366 ---------~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          366 ---------SQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             ---------EHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             ---------cccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence                     012356677778888777776 34444 667777777777764332211100 000000011111111122


Q ss_pred             CccccCCCchhhhhhhhCCCCCCc-ccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc
Q 036049          316 GRMMAYNKIPDILAGIILSNKSFD-GAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL  394 (517)
Q Consensus       316 ~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  394 (517)
                      +........++.|+.|++++|.+. +.+|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            222333444788999999999998 5789999999999999999999998889999999999999999999998888889


Q ss_pred             ccCCCCCEEeccCCcccccCCCCCc
Q 036049          395 VELTFLAFFNVSDNYLTGLIPQGKQ  419 (517)
Q Consensus       395 ~~l~~L~~L~l~~N~l~~~~p~~~~  419 (517)
                      ..+++|+.|++++|++++.+|....
T Consensus       515 ~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             hcccCCcEEEecCCcccCCCcchHH
Confidence            9999999999999999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=286.49  Aligned_cols=111  Identities=21%  Similarity=0.169  Sum_probs=82.2

Q ss_pred             CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccc--cCChhccCCCCCCeeeCCCCcccccCcc-ccccCCC
Q 036049          323 KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNNKFSGRIPQ-QLVELTF  399 (517)
Q Consensus       323 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~  399 (517)
                      ..++.|++|++++|.+++..|..+..+++|+.|+|++|++++  .+|..+..+++|++|+|++|++++.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            346678888888888888778888888888888888888875  4556788888888888888888864554 3677778


Q ss_pred             CCEEeccCCcccccCCCCCcCCccCCCcccCCCCC
Q 036049          400 LAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGL  434 (517)
Q Consensus       400 L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~  434 (517)
                      |++|++++|++++..|.... ..++.+++++|...
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK  434 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCC
T ss_pred             CCEEECcCCCCCcchhhhhc-ccCCEEECCCCccc
Confidence            88888888887766664322 46666666666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=1.1e-31  Score=284.32  Aligned_cols=309  Identities=18%  Similarity=0.154  Sum_probs=256.2

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh-hhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI-INLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      .+++.|+|++|.+++..+.  .|..+++|++|+|++|.+++  +++.. ..+. +|++|+|++|.+.+..+..|+++++|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRY--LPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCC--CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCC--CCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            5799999999999988777  89999999999999999988  55554 5565 99999999999976656667999999


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      ++|+|++|.+++..|..|+.+++|++|++++|.+++.   .+..+++|+.|++++|.+++       ++.      .++|
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-------l~~------~~~L  213 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-------LAI------PIAV  213 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-------EEC------CTTC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-------ccC------Cchh
Confidence            9999999999998888999999999999999999864   25678999999999998873       221      6789


Q ss_pred             CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049          220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG  299 (517)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  299 (517)
                      ++|++++|.++.++..               ..++|+.|++++|.+++.   ..+..+++|+.|+++++....       
T Consensus       214 ~~L~ls~n~l~~~~~~---------------~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~-------  268 (597)
T 3oja_B          214 EELDASHNSINVVRGP---------------VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEK-------  268 (597)
T ss_dssp             SEEECCSSCCCEEECS---------------CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCE-------
T ss_pred             heeeccCCcccccccc---------------cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCC-------
Confidence            9999999999887543               236899999999999853   457889999999998743221       


Q ss_pred             ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049          300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL  379 (517)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  379 (517)
                                       ..+.....++.|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus       269 -----------------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          269 -----------------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  329 (597)
T ss_dssp             -----------------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             -----------------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence                             111122236789999999999996 5777788999999999999999 688888999999999


Q ss_pred             eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049          380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      +|++|.+++. +  +..+++|+.|++++|++++..+. ..+..+....+.+++..|+.+
T Consensus       330 ~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          330 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             ECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            9999999854 3  67789999999999999976432 345666677788999999764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=1.4e-31  Score=282.00  Aligned_cols=329  Identities=20%  Similarity=0.255  Sum_probs=245.0

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcc-cCCccCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG-KVPHSIGNFTR  138 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~  138 (517)
                      ..++++|+|++|.+++..+.  .|.++++|++|+|++|.++.  +|..  .+. +|++|++++|.+.+ .+|..|+++++
T Consensus        75 l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           75 LSELRVLRLSHNRIRSLDFH--VFLFNQDLEYLDVSHNRLQN--ISCC--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             CTTCCEEECCSCCCCEECTT--TTTTCTTCCEEECTTSCCCE--ECSC--CCT-TCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             CCCccEEECCCCCCCcCCHH--HhCCCCCCCEEECCCCcCCc--cCcc--ccc-cCCEEECCCCCccccCchHhhcccCc
Confidence            46899999999999988777  89999999999999999986  7766  555 99999999999976 34689999999


Q ss_pred             CcEEEccCCcccccccccccCCccc--cEEEcccccc--cccCchhhhcCC-----------------------------
Q 036049          139 LQFLYLGFNNFSGDLLGSIGNLRSL--EAIYMSKCNF--SGQITSSLRNLT-----------------------------  185 (517)
Q Consensus       139 L~~L~Ls~n~i~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-----------------------------  185 (517)
                      |++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+..+.                             
T Consensus       148 L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  224 (562)
T 3a79_B          148 LTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ  224 (562)
T ss_dssp             CCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred             ccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence            99999999999853   34555555  9999999988  656555554432                             


Q ss_pred             ----------------------------------------------------cccccccccccCcceecccccccccccc
Q 036049          186 ----------------------------------------------------ELVVLDMAQNSYGGTMEIEGKVHKWLLD  213 (517)
Q Consensus       186 ----------------------------------------------------~L~~L~l~~N~l~~~~~~~~~~~~~~~~  213 (517)
                                                                          +|++|++++|.+++      .+|..++.
T Consensus       225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~ip~~~~~  298 (562)
T 3a79_B          225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE------RIDREEFT  298 (562)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECS------CCCCCCCC
T ss_pred             EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeec------cccchhhh
Confidence                                                                45555555555442      33433210


Q ss_pred             ---------------------------------------------------ccCCCCCeEeccCCcccccCCCCCCCCCC
Q 036049          214 ---------------------------------------------------PNMQNLNALNLSHNLLTGFDQHLVLLPGN  242 (517)
Q Consensus       214 ---------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~  242 (517)
                                                                         ..+++|++|++++|.+++..+.       
T Consensus       299 ~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------  371 (562)
T 3a79_B          299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ-------  371 (562)
T ss_dssp             CCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT-------
T ss_pred             cccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhh-------
Confidence                                                               1267788888888887764332       


Q ss_pred             CCCCCCCCCCCcccEEEccCCcCCCCCCh--hhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCcccc
Q 036049          243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPS--KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMA  320 (517)
Q Consensus       243 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                           .+..+++|++|++++|+++ .++.  ..+..+++|+.|+++++.....                       ....
T Consensus       372 -----~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~-----------------------~~~~  422 (562)
T 3a79_B          372 -----GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH-----------------------AYDR  422 (562)
T ss_dssp             -----TCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSC-----------------------CSSC
T ss_pred             -----hhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCc-----------------------cChh
Confidence                 4578999999999999998 4553  4578899999999988443210                       1111


Q ss_pred             CCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccc-cccCCC
Q 036049          321 YNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTF  399 (517)
Q Consensus       321 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~  399 (517)
                      ....++.|+.|++++|.+++..|..+.  ++|+.|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  498 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS  498 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred             hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence            223367899999999999987776654  79999999999999 78887779999999999999999 56655 999999


Q ss_pred             CCEEeccCCcccccCCCCCcCCcc---CCCcccCCCCCCCCCCCCCCCC
Q 036049          400 LAFFNVSDNYLTGLIPQGKQFATF---DNTSFDGNSGLCGKPLSKGCES  445 (517)
Q Consensus       400 L~~L~l~~N~l~~~~p~~~~~~~l---~~~~~~~Np~~c~~~~~~~c~~  445 (517)
                      |+.|++++|++++..|....+..+   ....+. +...|+.+....|..
T Consensus       499 L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          499 LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR-NSAGSVAPDSAKCSG  546 (562)
T ss_dssp             CCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEE-CSSSSBCSSSSCBSS
T ss_pred             CCEEEecCCCcCCCcchHHHHHHHHHhcCCccc-ccccCCCCCCCccCC
Confidence            999999999999877643221111   111222 223345666667766

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=7.3e-31  Score=257.76  Aligned_cols=287  Identities=18%  Similarity=0.207  Sum_probs=197.8

Q ss_pred             EEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049           63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL  142 (517)
Q Consensus        63 l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  142 (517)
                      ++.++++++.++ .+|.  .+  .++|++|++++|.++.. .+..+..+. +|++|++++|.+.+..|..|+++++|++|
T Consensus        35 l~~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           35 LRVVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             TTEEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             CCEEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            445666666665 3333  33  36788888888888762 233555555 88888888888877778888888888888


Q ss_pred             EccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeE
Q 036049          143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNAL  222 (517)
Q Consensus       143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  222 (517)
                      ++++|.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.++..    +..+..+..  + +|++|
T Consensus       108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~--l-~L~~L  177 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----GFEPGAFDG--L-KLNYL  177 (332)
T ss_dssp             ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----GSCTTSSCS--C-CCSCC
T ss_pred             ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----CCCcccccC--C-ccCEE
Confidence            88888888 5555554  7888888888888866666788888888888888877521    123333333  4 88888


Q ss_pred             eccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccc
Q 036049          223 NLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLL  302 (517)
Q Consensus       223 ~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  302 (517)
                      ++++|.+++++...               .++|++|++++|.+++ ++...+..                          
T Consensus       178 ~l~~n~l~~l~~~~---------------~~~L~~L~l~~n~i~~-~~~~~l~~--------------------------  215 (332)
T 2ft3_A          178 RISEAKLTGIPKDL---------------PETLNELHLDHNKIQA-IELEDLLR--------------------------  215 (332)
T ss_dssp             BCCSSBCSSCCSSS---------------CSSCSCCBCCSSCCCC-CCTTSSTT--------------------------
T ss_pred             ECcCCCCCccCccc---------------cCCCCEEECCCCcCCc-cCHHHhcC--------------------------
Confidence            88888888754321               2678888888888873 33222222                          


Q ss_pred             hhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCC
Q 036049          303 MTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLS  382 (517)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  382 (517)
                                            .+.|+.|++++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|+++
T Consensus       216 ----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          216 ----------------------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             ----------------------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             ----------------------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence                                  345666777777777766667778888888888888887 677778888888888888


Q ss_pred             CCcccccCcccccc------CCCCCEEeccCCccc--ccCCCC-CcCCccCCCcccCC
Q 036049          383 NNKFSGRIPQQLVE------LTFLAFFNVSDNYLT--GLIPQG-KQFATFDNTSFDGN  431 (517)
Q Consensus       383 ~N~l~~~~p~~l~~------l~~L~~L~l~~N~l~--~~~p~~-~~~~~l~~~~~~~N  431 (517)
                      +|++++..+..|..      .+.|+.|++++|++.  +..|.. ..+..+..+++++|
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            88888665555544      356788888888876  333332 33555666666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.9e-31  Score=256.61  Aligned_cols=287  Identities=19%  Similarity=0.218  Sum_probs=209.8

Q ss_pred             EEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        63 l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      ++.++++++.++. +|.  .+  .++|++|++++|.++.  +++ .+..+. +|++|++++|.+.+..|..|+++++|++
T Consensus        33 l~~l~~~~~~l~~-lp~--~~--~~~l~~L~L~~n~i~~--~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           33 LRVVQCSDLGLEK-VPK--DL--PPDTALLDLQNNKITE--IKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLER  104 (330)
T ss_dssp             TTEEECTTSCCCS-CCC--SC--CTTCCEEECCSSCCCC--BCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CeEEEecCCCccc-cCc--cC--CCCCeEEECCCCcCCE--eChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence            3455556666653 333  23  2688999999999987  554 455665 9999999999998777888999999999


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA  221 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~  221 (517)
                      |++++|.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+...    +..+..+..  +++|++
T Consensus       105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~--l~~L~~  175 (330)
T 1xku_A          105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----GIENGAFQG--MKKLSY  175 (330)
T ss_dssp             EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----GBCTTGGGG--CTTCCE
T ss_pred             EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----CcChhhccC--CCCcCE
Confidence            999999998 5666554  7899999999999977778889999999999999988521    133444555  899999


Q ss_pred             EeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCccc
Q 036049          222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL  301 (517)
Q Consensus       222 L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  301 (517)
                      |++++|.++.++..               ..++|++|++++|.+++..| ..+..                         
T Consensus       176 L~l~~n~l~~l~~~---------------~~~~L~~L~l~~n~l~~~~~-~~~~~-------------------------  214 (330)
T 1xku_A          176 IRIADTNITTIPQG---------------LPPSLTELHLDGNKITKVDA-ASLKG-------------------------  214 (330)
T ss_dssp             EECCSSCCCSCCSS---------------CCTTCSEEECTTSCCCEECT-GGGTT-------------------------
T ss_pred             EECCCCccccCCcc---------------ccccCCEEECCCCcCCccCH-HHhcC-------------------------
Confidence            99999998876432               13789999999999884333 33333                         


Q ss_pred             chhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049          302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL  381 (517)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  381 (517)
                                             .+.|+.|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++
T Consensus       215 -----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          215 -----------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             -----------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             -----------------------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence                                   344666677777777766667888888888888888888 77778888888888888


Q ss_pred             CCCcccccCcccccc------CCCCCEEeccCCcccc--cCCCC-CcCCccCCCcccCC
Q 036049          382 SNNKFSGRIPQQLVE------LTFLAFFNVSDNYLTG--LIPQG-KQFATFDNTSFDGN  431 (517)
Q Consensus       382 s~N~l~~~~p~~l~~------l~~L~~L~l~~N~l~~--~~p~~-~~~~~l~~~~~~~N  431 (517)
                      ++|+|++..+..|..      .+.|+.+++++|++..  ..|.. .....+..+++++|
T Consensus       271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            888888666555543      3678888888888863  22221 23445566666665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=2.2e-31  Score=279.80  Aligned_cols=329  Identities=21%  Similarity=0.232  Sum_probs=226.8

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh-hhhcccCCcEEEccCCCCcc-cCCccCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE-IINLSCSLKLLDLRSCGFWG-KVPHSIGNFT  137 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~  137 (517)
                      ..++++|+|++|.+++..+.  .|.++++|++|++++|.+++  +++. +..+. +|++|++++|.+.+ ..|..|++++
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~  123 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGD--AFYSLGSLEHLDLSDNHLSS--LSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLT  123 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCS--CCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred             CCcccEEECCCCCcCccChh--hccccccCCEEECCCCccCc--cCHHHhccCC-CCcEEECCCCcccccchhhhhhccC
Confidence            46899999999999988777  89999999999999999987  5555 66666 99999999999965 4577899999


Q ss_pred             CCcEEEccCCccccccc-ccccCCccccEEEcccccccccCchhhhc------------------------CCccccccc
Q 036049          138 RLQFLYLGFNNFSGDLL-GSIGNLRSLEAIYMSKCNFSGQITSSLRN------------------------LTELVVLDM  192 (517)
Q Consensus       138 ~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------------------------l~~L~~L~l  192 (517)
                      +|++|++++|.+.+.+| ..|.++++|++|++++|.+++..|..+..                        +++|++|++
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence            99999999998444444 67999999999999999998877777655                        455666666


Q ss_pred             ccccCccee----ccc-----------------c----------------------------------------------
Q 036049          193 AQNSYGGTM----EIE-----------------G----------------------------------------------  205 (517)
Q Consensus       193 ~~N~l~~~~----~~~-----------------~----------------------------------------------  205 (517)
                      ++|.+++..    .+.                 +                                              
T Consensus       204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L  283 (549)
T 2z81_A          204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV  283 (549)
T ss_dssp             ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred             cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence            666665420    000                 0                                              


Q ss_pred             ----------------------------------------ccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCC
Q 036049          206 ----------------------------------------KVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEE  245 (517)
Q Consensus       206 ----------------------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~  245 (517)
                                                              .+|..++. .+++|++|++++|++++..+.         .
T Consensus       284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~-~l~~L~~L~Ls~N~l~~~~~~---------~  353 (549)
T 2z81_A          284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ-HLKSLEFLDLSENLMVEEYLK---------N  353 (549)
T ss_dssp             CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH-HCTTCCEEECCSSCCCHHHHH---------H
T ss_pred             ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh-cCccccEEEccCCcccccccc---------c
Confidence                                                    01111100 134444444444444432110         0


Q ss_pred             CCCCCCCCcccEEEccCCcCCCCCCh--hhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCcccc--C
Q 036049          246 PRTGCGFSKLRIIDLSDNRFTGKLPS--KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMA--Y  321 (517)
Q Consensus       246 ~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  321 (517)
                      ...+..+++|++|++++|+++ .++.  ..+..+++|+.|+++++... .. +..    ......+..+.+.+....  .
T Consensus       354 ~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l-p~~----~~~~~~L~~L~Ls~N~l~~l~  426 (549)
T 2z81_A          354 SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PM-PDS----CQWPEKMRFLNLSSTGIRVVK  426 (549)
T ss_dssp             HTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CC-CSC----CCCCTTCCEEECTTSCCSCCC
T ss_pred             hhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cC-Chh----hcccccccEEECCCCCccccc
Confidence            011345667777777777776 3332  34666777777777764322 11 100    001111222222221111  1


Q ss_pred             CCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCC
Q 036049          322 NKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLA  401 (517)
Q Consensus       322 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  401 (517)
                      ...++.|+.|++++|++++..    ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|..+..+++|+
T Consensus       427 ~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          427 TCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             TTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             chhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence            123468899999999988642    57899999999999999 6776 56799999999999999988888899999999


Q ss_pred             EEeccCCcccccCCC
Q 036049          402 FFNVSDNYLTGLIPQ  416 (517)
Q Consensus       402 ~L~l~~N~l~~~~p~  416 (517)
                      .|++++|++++.+|.
T Consensus       501 ~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          501 KIWLHTNPWDCSCPR  515 (549)
T ss_dssp             EEECCSSCBCCCHHH
T ss_pred             EEEecCCCccCCCcc
Confidence            999999999988874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=9.4e-31  Score=269.11  Aligned_cols=322  Identities=22%  Similarity=0.258  Sum_probs=195.3

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .++++|+|++|.+++..    .+.++++|++|++++|.+.+  +++ +..+. +|++|++++|.+.+. +. +.++++|+
T Consensus        68 ~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~-~L~~L~L~~n~l~~~-~~-~~~l~~L~  137 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIAD--ITP-LANLT-NLTGLTLFNNQITDI-DP-LKNLTNLN  137 (466)
T ss_dssp             TTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred             cCCCEEECCCCccCCch----hhhccccCCEEECCCCcccc--Chh-hcCCC-CCCEEECCCCCCCCC-hH-HcCCCCCC
Confidence            45666666666665432    25566666666666666655  333 44444 666666666666433 22 56666666


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      +|++++|.+.+ ++ .+..+++|++|+++ |.+.+.  ..+.++++|++|++++|.+.+       ++ .+..  +++|+
T Consensus       138 ~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~-------~~-~l~~--l~~L~  202 (466)
T 1o6v_A          138 RLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSD-------IS-VLAK--LTNLE  202 (466)
T ss_dssp             EEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCC-------CG-GGGG--CTTCS
T ss_pred             EEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCC-------Ch-hhcc--CCCCC
Confidence            66666666653 22 35555555555554 233322  125666677777777776652       22 1333  66777


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK  300 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  300 (517)
                      +|++++|.+++..+              +..+++|++|++++|.++ .++  .+..+++|+.|+++++........  ..
T Consensus       203 ~L~l~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~--~~  263 (466)
T 1o6v_A          203 SLIATNNQISDITP--------------LGILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISNLAPL--SG  263 (466)
T ss_dssp             EEECCSSCCCCCGG--------------GGGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGGG--TT
T ss_pred             EEEecCCccccccc--------------ccccCCCCEEECCCCCcc-cch--hhhcCCCCCEEECCCCccccchhh--hc
Confidence            77777776665432              244566666666666665 232  255566666666665332111000  00


Q ss_pred             cchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeee
Q 036049          301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD  380 (517)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  380 (517)
                      ........+....+.+...  ...++.|+.|++++|.+++..+  +..+++|+.|+|++|++++..|  +..+++|++|+
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence            0000001111111111111  2336778899999999886544  7788999999999999986655  77889999999


Q ss_pred             CCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCC
Q 036049          381 LSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLC  435 (517)
Q Consensus       381 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c  435 (517)
                      +++|++++.  ..+..+++|+.|++++|++++.+| ...+..+..+++.+|++..
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            999998854  468889999999999999998887 5677888888888887765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=3.1e-31  Score=291.85  Aligned_cols=333  Identities=19%  Similarity=0.136  Sum_probs=219.3

Q ss_pred             EEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccC-CccCCCCCCCcEE
Q 036049           64 VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKV-PHSIGNFTRLQFL  142 (517)
Q Consensus        64 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L  142 (517)
                      +..+.++++++.. |   .  -.++|++|+|++|.++.. .+..+..+. +|++|+|++|.+.+.+ |..|.++++|++|
T Consensus         7 ~~~dcs~~~L~~v-P---~--lp~~l~~LdLs~N~i~~i-~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L   78 (844)
T 3j0a_A            7 RIAFYRFCNLTQV-P---Q--VLNTTERLLLSFNYIRTV-TASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRIL   78 (844)
T ss_dssp             EEEEESCCCSSCC-C---S--SCTTCCEEEEESCCCCEE-CSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred             eEEEccCCCCCCC-C---C--CCCCcCEEECCCCcCCcc-ChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence            3456677777644 2   2  357999999999999874 456677777 9999999999665555 7889999999999


Q ss_pred             EccCCcccccccccccCCccccEEEcccccccccCchh--hhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS--LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      +|++|.+++..|..|+++++|++|+|++|.+++..|..  |.++++|++|++++|.+++.     ..+..+..  +++|+
T Consensus        79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-----~~~~~~~~--L~~L~  151 (844)
T 3j0a_A           79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-----YLHPSFGK--LNSLK  151 (844)
T ss_dssp             ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-----CCCGGGGT--CSSCC
T ss_pred             ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc-----ccchhHhh--CCCCC
Confidence            99999999888999999999999999999999766665  99999999999999999731     12345565  99999


Q ss_pred             eEeccCCcccccCCCCC-------C---------CCCCCCCCCCCCCCC------cccEEEccCCcCCCCCChhhhhcc-
Q 036049          221 ALNLSHNLLTGFDQHLV-------L---------LPGNNEEPRTGCGFS------KLRIIDLSDNRFTGKLPSKSFLCW-  277 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~-------l---------l~~~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~p~~~~~~l-  277 (517)
                      +|++++|.+++..+...       +         +.+..  +..+..++      +|++|++++|.+++.+|......+ 
T Consensus       152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  229 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV--SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS  229 (844)
T ss_dssp             EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC--CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred             EEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc--ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence            99999999987644310       0         00100  11111111      255555555555544443322211 


Q ss_pred             -cccceeccCccccccc----ccCCCc--ccchhhhccceeee-----ecCccccCCCchhhhhhhhCCCCCCcccCccc
Q 036049          278 -NAMKIVNASELRYLQD----VLSPSG--KLLMTTYDYLLTMN-----IKGRMMAYNKIPDILAGIILSNKSFDGAIPAS  345 (517)
Q Consensus       278 -~~L~~L~l~~~~~l~~----~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  345 (517)
                       ..+..+.+.....-..    ......  .........+..+.     +.+........++.|+.|++++|.+++..|..
T Consensus       230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  309 (844)
T 3j0a_A          230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA  309 (844)
T ss_dssp             SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred             cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence             2222232221000000    000000  00000001111111     11122233344567778888888887777777


Q ss_pred             ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049          346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                      |..+++|+.|+|++|++++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|.+++.
T Consensus       310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            77788888888888888766677788888888888888888766666777788888888888877753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.9e-30  Score=254.25  Aligned_cols=282  Identities=22%  Similarity=0.288  Sum_probs=233.4

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      ..++++|++++|.+++..    .+..+++|++|++++|.++.  ++ .+..+. +|++|++++|.+.+ ++. +..+++|
T Consensus        65 ~~~L~~L~l~~n~i~~~~----~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~-~L~~L~l~~n~i~~-~~~-~~~l~~L  134 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDIS----PLSNLVKLTNLYIGTNKITD--IS-ALQNLT-NLRELYLNEDNISD-ISP-LANLTKM  134 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--CG-GGTTCT-TCSEEECTTSCCCC-CGG-GTTCTTC
T ss_pred             cCCccEEEccCCccccch----hhhcCCcCCEEEccCCcccC--ch-HHcCCC-cCCEEECcCCcccC-chh-hccCCce
Confidence            468999999999997543    38899999999999999987  54 566666 99999999999954 444 8999999


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      ++|++++|.....+ ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.       .++. +..  +++|
T Consensus       135 ~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-------~~~~-~~~--l~~L  201 (347)
T 4fmz_A          135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-------DISP-LAS--LTSL  201 (347)
T ss_dssp             CEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-------CCGG-GGG--CTTC
T ss_pred             eEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-------cccc-ccC--CCcc
Confidence            99999999766444 449999999999999999985443  889999999999999987       3333 444  8999


Q ss_pred             CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049          220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG  299 (517)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  299 (517)
                      ++|++++|.+++..+              +..+++|++|++++|.++ .++.  +..+++|+.|+++++.....      
T Consensus       202 ~~L~l~~n~l~~~~~--------------~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~------  258 (347)
T 4fmz_A          202 HYFTAYVNQITDITP--------------VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI------  258 (347)
T ss_dssp             CEEECCSSCCCCCGG--------------GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC------
T ss_pred             ceeecccCCCCCCch--------------hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC------
Confidence            999999999987643              367899999999999998 4554  78899999999887432210      


Q ss_pred             ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049          300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL  379 (517)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  379 (517)
                                          .....+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|..+..+++|++|
T Consensus       259 --------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          259 --------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             --------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             --------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence                                1112367899999999999864  458889999999999999998889999999999999


Q ss_pred             eCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049          380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  411 (517)
                      ++++|++++..|  +..+++|++|++++|+|+
T Consensus       317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          317 FLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999997655  889999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5e-30  Score=251.57  Aligned_cols=268  Identities=18%  Similarity=0.193  Sum_probs=141.3

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      .++.|+|++|.+++..+.  .|.++++|++|++++|.++.. .|..+..+. +|++|++++|.+. .+|..+.  ++|++
T Consensus        53 ~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~--~~L~~  125 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLV-KLERLYLSKNQLK-ELPEKMP--KTLQE  125 (330)
T ss_dssp             TCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCT-TCCEEECCSSCCS-BCCSSCC--TTCCE
T ss_pred             CCeEEECCCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCC-CCCEEECCCCcCC-ccChhhc--ccccE
Confidence            455666666666554444  555666666666666666542 244444444 6666666666653 3444333  45666


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccc--cCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG--QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      |++++|.+++..+..|.++++|++|++++|.+..  ..+..+.++++|++|++++|.++       .+|..+    .++|
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-------~l~~~~----~~~L  194 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-------TIPQGL----PPSL  194 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-------SCCSSC----CTTC
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-------cCCccc----cccC
Confidence            6666666665555555666666666666666542  44555566666666666666554       333322    2456


Q ss_pred             CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049          220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG  299 (517)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  299 (517)
                      ++|++++|.+++..+.            .+..+++|++|++++|.+++ ++...+..                       
T Consensus       195 ~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~-----------------------  238 (330)
T 1xku_A          195 TELHLDGNKITKVDAA------------SLKGLNNLAKLGLSFNSISA-VDNGSLAN-----------------------  238 (330)
T ss_dssp             SEEECTTSCCCEECTG------------GGTTCTTCCEEECCSSCCCE-ECTTTGGG-----------------------
T ss_pred             CEEECCCCcCCccCHH------------HhcCCCCCCEEECCCCcCce-eChhhccC-----------------------
Confidence            6666666666554322            23455566666666666552 22211211                       


Q ss_pred             ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccC------C
Q 036049          300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN------L  373 (517)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l  373 (517)
                                               .+.|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..      .
T Consensus       239 -------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~  292 (330)
T 1xku_A          239 -------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK  292 (330)
T ss_dssp             -------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred             -------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccc
Confidence                                     233444555555555 45555555666666666666665444444432      2


Q ss_pred             CCCCeeeCCCCcccc--cCccccccCCCCCEEeccCCc
Q 036049          374 TNLESLDLSNNKFSG--RIPQQLVELTFLAFFNVSDNY  409 (517)
Q Consensus       374 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~  409 (517)
                      +.|+.|++++|.+..  ..|..|..+..++.+++++|+
T Consensus       293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            455566666665542  334455555666666666553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.3e-30  Score=253.04  Aligned_cols=267  Identities=24%  Similarity=0.302  Sum_probs=221.1

Q ss_pred             CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEE
Q 036049           88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY  167 (517)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~  167 (517)
                      +++.++++++.++.  +|..+.   ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        34 ~l~~l~~~~~~l~~--ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA--VPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSS--CCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCccc--cCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            68899999999876  776653   3899999999999877788899999999999999999988889999999999999


Q ss_pred             cccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCC
Q 036049          168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEP  246 (517)
Q Consensus       168 L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~  246 (517)
                      +++|.++ .+|..+.  ++|++|++++|.++       .++.. +..  +++|++|++++|.++.....          +
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~----------~  166 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIR-------KVPKGVFSG--LRNMNCIEMGGNPLENSGFE----------P  166 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCC-------CCCSGGGSS--CSSCCEEECCSCCCBGGGSC----------T
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccC-------ccCHhHhCC--CccCCEEECCCCccccCCCC----------c
Confidence            9999998 5565544  88999999999887       44443 444  89999999999998742111          1


Q ss_pred             CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049          247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD  326 (517)
Q Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                      ..+..+ +|++|++++|.++ .+|...                                                   .+
T Consensus       167 ~~~~~l-~L~~L~l~~n~l~-~l~~~~---------------------------------------------------~~  193 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISEAKLT-GIPKDL---------------------------------------------------PE  193 (332)
T ss_dssp             TSSCSC-CCSCCBCCSSBCS-SCCSSS---------------------------------------------------CS
T ss_pred             ccccCC-ccCEEECcCCCCC-ccCccc---------------------------------------------------cC
Confidence            133555 8999999999987 455321                                                   24


Q ss_pred             hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049          327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  406 (517)
                      .|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            5788899999999888889999999999999999999888888999999999999999999 788889999999999999


Q ss_pred             CCcccccCCCCC-------cCCccCCCcccCCCCCC
Q 036049          407 DNYLTGLIPQGK-------QFATFDNTSFDGNSGLC  435 (517)
Q Consensus       407 ~N~l~~~~p~~~-------~~~~l~~~~~~~Np~~c  435 (517)
                      +|++++..+...       .+..+..+++.+||+.+
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccc
Confidence            999998766532       14557788899999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=1.3e-29  Score=270.75  Aligned_cols=349  Identities=21%  Similarity=0.159  Sum_probs=245.0

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .+++.|+|++|.|++..+.  +|.++++|++|+|++|+++.  +|+..+...++|++|++++|.+.+..+..|+++++|+
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~  151 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  151 (635)
T ss_dssp             TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             CCCCEEECCCCcCCCcChh--HhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence            5799999999999988777  89999999999999999987  7766554444999999999999877777899999999


Q ss_pred             EEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCccc----ccccccccCccee--------------
Q 036049          141 FLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV----VLDMAQNSYGGTM--------------  201 (517)
Q Consensus       141 ~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~l~~N~l~~~~--------------  201 (517)
                      +|++++|.+++ ..|..++.+++|++|++++|.+++..+..|..+.+++    .++++.|.+....              
T Consensus       152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l  231 (635)
T 4g8a_A          152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL  231 (635)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred             eeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence            99999999976 4678889999999999999999877777665544332    2223332221100              


Q ss_pred             --------------------------------------------------------------------------------
Q 036049          202 --------------------------------------------------------------------------------  201 (517)
Q Consensus       202 --------------------------------------------------------------------------------  201 (517)
                                                                                                      
T Consensus       232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l  311 (635)
T 4g8a_A          232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF  311 (635)
T ss_dssp             ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred             hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence                                                                                            


Q ss_pred             ---------------------------ccc-------------------cccccccccccCCCCCeEeccCCcccccCCC
Q 036049          202 ---------------------------EIE-------------------GKVHKWLLDPNMQNLNALNLSHNLLTGFDQH  235 (517)
Q Consensus       202 ---------------------------~~~-------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  235 (517)
                                                 .+.                   ...+....  .+++|+.|++++|.+......
T Consensus       312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~  389 (635)
T 4g8a_A          312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCC  389 (635)
T ss_dssp             EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC--BCTTCCEEECCSSCCBEEEEC
T ss_pred             cccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc--cccccccchhhcccccccccc
Confidence                                       000                   00000111  278899999999987643211


Q ss_pred             C-------CC----CC--CCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccc
Q 036049          236 L-------VL----LP--GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLL  302 (517)
Q Consensus       236 ~-------~l----l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  302 (517)
                      .       .+    +.  +.......+..+++|+.++++.|+.....+...|..+..++.++++................
T Consensus       390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~  469 (635)
T 4g8a_A          390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  469 (635)
T ss_dssp             CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence            1       00    00  01111223456677777777777766555555666677777776665322111000000000


Q ss_pred             hhhhccceeee-ecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049          303 MTTYDYLLTMN-IKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL  381 (517)
Q Consensus       303 ~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  381 (517)
                      ......+.... ............++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            00000111111 11112233445778999999999999999999999999999999999999888889999999999999


Q ss_pred             CCCcccccCccccccC-CCCCEEeccCCcccccCC
Q 036049          382 SNNKFSGRIPQQLVEL-TFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       382 s~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p  415 (517)
                      ++|+|++..|..+..+ ++|++|++++|++++...
T Consensus       550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999988 689999999999997654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=257.86  Aligned_cols=283  Identities=18%  Similarity=0.202  Sum_probs=207.4

Q ss_pred             CCCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCC
Q 036049           45 NVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSC  123 (517)
Q Consensus        45 ~~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n  123 (517)
                      ...+|.|.|+ |          +++++.++. +|.  .+.  ++|++|++++|.++.  ++. .+..+. +|++|++++|
T Consensus        26 ~~~~C~~~~~-c----------~~~~~~l~~-iP~--~~~--~~L~~L~l~~n~i~~--~~~~~~~~l~-~L~~L~L~~n   86 (353)
T 2z80_A           26 ASLSCDRNGI-C----------KGSSGSLNS-IPS--GLT--EAVKSLDLSNNRITY--ISNSDLQRCV-NLQALVLTSN   86 (353)
T ss_dssp             -CCEECTTSE-E----------ECCSTTCSS-CCT--TCC--TTCCEEECTTSCCCE--ECTTTTTTCT-TCCEEECTTS
T ss_pred             cCCCCCCCeE-e----------eCCCCCccc-ccc--ccc--ccCcEEECCCCcCcc--cCHHHhccCC-CCCEEECCCC
Confidence            4567889876 5          445677763 343  332  589999999999886  555 455555 9999999999


Q ss_pred             CCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCc-hhhhcCCccccccccccc-Cccee
Q 036049          124 GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNS-YGGTM  201 (517)
Q Consensus       124 ~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~-l~~~~  201 (517)
                      .+.+..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+++..+ ..+.++++|++|++++|. +.+  
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~--  164 (353)
T 2z80_A           87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK--  164 (353)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--
T ss_pred             ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc--
Confidence            9987778889999999999999999986555568889999999999999884433 478889999999999884 541  


Q ss_pred             ccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccc
Q 036049          202 EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMK  281 (517)
Q Consensus       202 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~  281 (517)
                          ..+..+..  +++|++|++++|.+++..+.            .+..+++|++|++++|.+. .+|...+..+++|+
T Consensus       165 ----~~~~~~~~--l~~L~~L~l~~n~l~~~~~~------------~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~  225 (353)
T 2z80_A          165 ----IQRKDFAG--LTFLEELEIDASDLQSYEPK------------SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE  225 (353)
T ss_dssp             ----ECTTTTTT--CCEEEEEEEEETTCCEECTT------------TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEE
T ss_pred             ----cCHHHccC--CCCCCEEECCCCCcCccCHH------------HHhccccCCeecCCCCccc-cchhhhhhhccccc
Confidence                22334545  88899999999998876443            3577889999999999886 66655444444444


Q ss_pred             eeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccc---cCCCCCCeEeCc
Q 036049          282 IVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASI---SNLKGLQVLNLH  358 (517)
Q Consensus       282 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls  358 (517)
                      .|                                                ++++|.+++..+..+   .....++.++|+
T Consensus       226 ~L------------------------------------------------~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~  257 (353)
T 2z80_A          226 CL------------------------------------------------ELRDTDLDTFHFSELSTGETNSLIKKFTFR  257 (353)
T ss_dssp             EE------------------------------------------------EEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred             EE------------------------------------------------ECCCCccccccccccccccccchhhccccc
Confidence            44                                                444454444322222   234567777787


Q ss_pred             Cccccc----cCChhccCCCCCCeeeCCCCcccccCccc-cccCCCCCEEeccCCcccccCCC
Q 036049          359 NNNLQG----HIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLAFFNVSDNYLTGLIPQ  416 (517)
Q Consensus       359 ~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l~~N~l~~~~p~  416 (517)
                      ++.+++    .+|..+..+++|++|+|++|+++ .+|.. |..+++|++|++++|++++.+|.
T Consensus       258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            777764    46778889999999999999998 55555 58899999999999999987764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=257.77  Aligned_cols=229  Identities=19%  Similarity=0.202  Sum_probs=137.9

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      ++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..|..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            55555555555555555555666666666666666655555556666666666666666654444455555666666666


Q ss_pred             cccCcceecccccccc-ccccccCCCCCeEeccCC-cccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049          194 QNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHN-LLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS  271 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  271 (517)
                      +|.++       .++. .+..  +++|++|++++| .+..+++.            .+.++++|++|++++|.++ .+|.
T Consensus       145 ~N~i~-------~~~~~~~~~--l~~L~~L~l~~~~~l~~i~~~------------~~~~l~~L~~L~L~~n~l~-~~~~  202 (440)
T 3zyj_A          145 NNPIE-------SIPSYAFNR--IPSLRRLDLGELKRLSYISEG------------AFEGLSNLRYLNLAMCNLR-EIPN  202 (440)
T ss_dssp             SCCCC-------EECTTTTTT--CTTCCEEECCCCTTCCEECTT------------TTTTCSSCCEEECTTSCCS-SCCC
T ss_pred             CCccc-------ccCHHHhhh--CcccCEeCCCCCCCcceeCcc------------hhhcccccCeecCCCCcCc-cccc
Confidence            66554       2222 2222  556666666653 23322211            2455666777777776665 3331


Q ss_pred             hhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCC
Q 036049          272 KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG  351 (517)
Q Consensus       272 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  351 (517)
                        +..                                                ..+|+.|++++|.+++..|..|..+++
T Consensus       203 --~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          203 --LTP------------------------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             --CTT------------------------------------------------CSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             --cCC------------------------------------------------CcccCEEECCCCccCccChhhhccCcc
Confidence              100                                                233445555555555555666777777


Q ss_pred             CCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccC
Q 036049          352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI  414 (517)
Q Consensus       352 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  414 (517)
                      |+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            888888888887777777777788888888888887666666777777888888877776543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=1.7e-29  Score=258.74  Aligned_cols=250  Identities=17%  Similarity=0.182  Sum_probs=168.3

Q ss_pred             CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEc
Q 036049           89 LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYM  168 (517)
Q Consensus        89 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L  168 (517)
                      ...++.+++.++.  +|..+.   ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus        56 ~~~v~c~~~~l~~--iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLSE--VPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCSS--CCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcCc--cCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3455666666654  554332   26777777777776666667777777777777777777666667777777777777


Q ss_pred             ccccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCCeEeccCC-cccccCCCCCCCCCCCCCC
Q 036049          169 SKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHN-LLTGFDQHLVLLPGNNEEP  246 (517)
Q Consensus       169 ~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ll~~~~~~~  246 (517)
                      ++|.+++..+..|..+++|++|++++|.++       .++. .+..  +++|++|++++| .+..+++.           
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~--l~~L~~L~l~~~~~l~~i~~~-----------  190 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNR--VPSLMRLDLGELKKLEYISEG-----------  190 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTT--CTTCCEEECCCCTTCCEECTT-----------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhc--CCcccEEeCCCCCCccccChh-----------
Confidence            777777555566777777777777777665       3333 2333  677777777763 34333222           


Q ss_pred             CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049          247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD  326 (517)
Q Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                       .+.++++|++|++++|+++ .+|.  +.                                                .+.
T Consensus       191 -~~~~l~~L~~L~L~~n~l~-~~~~--~~------------------------------------------------~l~  218 (452)
T 3zyi_A          191 -AFEGLFNLKYLNLGMCNIK-DMPN--LT------------------------------------------------PLV  218 (452)
T ss_dssp             -TTTTCTTCCEEECTTSCCS-SCCC--CT------------------------------------------------TCT
T ss_pred             -hccCCCCCCEEECCCCccc-cccc--cc------------------------------------------------ccc
Confidence             3456777777777777776 3331  10                                                034


Q ss_pred             hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049          327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  406 (517)
                      +|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence            45666666677766667777778888888888888887777778888888888888888886666677778888888888


Q ss_pred             CCcccccCC
Q 036049          407 DNYLTGLIP  415 (517)
Q Consensus       407 ~N~l~~~~p  415 (517)
                      +|++.+...
T Consensus       299 ~Np~~CdC~  307 (452)
T 3zyi_A          299 HNPWNCDCD  307 (452)
T ss_dssp             SSCEECSTT
T ss_pred             CCCcCCCCC
Confidence            888775543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=3.7e-29  Score=255.52  Aligned_cols=299  Identities=18%  Similarity=0.143  Sum_probs=196.6

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .++++|++++|.+++. +   .+..+++|++|++++|.+++  +|  +..+. +|++|++++|.+.+. +  ++++++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~-~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITT--LD--LSQNT-NLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSC--CC--CTTCT-TCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCe--Ec--cccCC-CCCEEECcCCCCcee-e--cCCCCcCC
Confidence            4678888888888754 2   57788888888888888876  43  55555 888888888888553 3  77888888


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      +|++++|.+++ +|  ++.+++|++|++++|.+++. +  +..+++|++|++++|...+      .+  .+..  +++|+
T Consensus       110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~------~~--~~~~--l~~L~  173 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKIT------KL--DVTP--QTQLT  173 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCC------CC--CCTT--CTTCC
T ss_pred             EEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccc------cc--cccc--CCcCC
Confidence            88888888875 33  77888888888888888753 2  6677778888887775432      22  1223  67777


Q ss_pred             eEeccCCcccccCCCC--CC----CCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccc
Q 036049          221 ALNLSHNLLTGFDQHL--VL----LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDV  294 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~--~l----l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~  294 (517)
                      +|++++|++++++...  .+    +.++.-....+..+++|++|++++|++++ +|   +..+++|+.|+++++..-.. 
T Consensus       174 ~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~-  248 (457)
T 3bz5_A          174 TLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTEL-  248 (457)
T ss_dssp             EEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-
T ss_pred             EEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCc-
Confidence            7777777776643110  00    00000000123455666666666666653 44   44555666666555322110 


Q ss_pred             cCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCCh------
Q 036049          295 LSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS------  368 (517)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------  368 (517)
                      ...       ....+..+..         ....|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.      
T Consensus       249 ~~~-------~l~~L~~L~l---------~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~  310 (457)
T 3bz5_A          249 DVS-------TLSKLTTLHC---------IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT  310 (457)
T ss_dssp             CCT-------TCTTCCEEEC---------TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred             CHH-------HCCCCCEEec---------cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce
Confidence            000       0000000000         02357888899998887776  46789999999999987666654      


Q ss_pred             --hccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049          369 --CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       369 --~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                        .+..+++|++|++++|++++. +  +..+++|+.|++++|++++.
T Consensus       311 ~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          311 ELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             CCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC
T ss_pred             EechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc
Confidence              256678999999999999974 3  88999999999999999973

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=3.7e-29  Score=257.17  Aligned_cols=304  Identities=25%  Similarity=0.264  Sum_probs=205.8

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      ..+++.|++++|.+.+..    .+.++++|++|++++|.++.  +++ +..+. +|++|++++|.+.+ ++ .+..+++|
T Consensus        89 l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~-~L~~L~l~~n~l~~-~~-~~~~l~~L  158 (466)
T 1o6v_A           89 LTKLVDILMNNNQIADIT----PLANLTNLTGLTLFNNQITD--IDP-LKNLT-NLNRLELSSNTISD-IS-ALSGLTSL  158 (466)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--CGG-GTTCT-TCSEEEEEEEEECC-CG-GGTTCTTC
T ss_pred             cccCCEEECCCCccccCh----hhcCCCCCCEEECCCCCCCC--ChH-HcCCC-CCCEEECCCCccCC-Ch-hhccCCcc
Confidence            468999999999998654    38899999999999999987  554 66666 99999999999854 33 47777777


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      ++|+++ |.+.+..  .+.++++|++|++++|.+++.  ..+..+++|++|++++|.+.+       ++. +..  +++|
T Consensus       159 ~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-------~~~-~~~--l~~L  223 (466)
T 1o6v_A          159 QQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD-------ITP-LGI--LTNL  223 (466)
T ss_dssp             SEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-------CGG-GGG--CTTC
T ss_pred             cEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc-------ccc-ccc--cCCC
Confidence            777775 3444322  266777777777777776632  246677777777777776652       111 222  6667


Q ss_pred             CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049          220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG  299 (517)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  299 (517)
                      ++|++++|.+++..              .+..+++|++|++++|.+++..|   +..+++|+.|+++++........  .
T Consensus       224 ~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~--~  284 (466)
T 1o6v_A          224 DELSLNGNQLKDIG--------------TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPL--A  284 (466)
T ss_dssp             CEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGG--T
T ss_pred             CEEECCCCCcccch--------------hhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccc--c
Confidence            77777777666542              12445566666666666653222   45555566665555322110000  0


Q ss_pred             ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049          300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL  379 (517)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  379 (517)
                      .........+....+.+...  ...++.|+.|++++|.+++..|  +..+++|+.|++++|++++.  ..+..+++|+.|
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  358 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL  358 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence            00000000111111111111  2346789999999999997765  78899999999999999864  468999999999


Q ss_pred             eCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049          380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  415 (517)
                      ++++|++++..|  +..+++|+.|++++|++++.+.
T Consensus       359 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~  392 (466)
T 1o6v_A          359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV  392 (466)
T ss_dssp             ECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred             eCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence            999999998776  8899999999999999998543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=6.2e-29  Score=253.86  Aligned_cols=294  Identities=16%  Similarity=0.127  Sum_probs=187.7

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      ..+++.|++++|.+++.     .+..+++|++|++++|.+++  ++  +..+. +|++|++++|.+.+ +|  ++.+++|
T Consensus        63 l~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~-~L~~L~L~~N~l~~-l~--~~~l~~L  129 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTN--LD--VTPLT-KLTYLNCDTNKLTK-LD--VSQNPLL  129 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CC--CTTCT-TCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred             cCCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCce--ee--cCCCC-cCCEEECCCCcCCe-ec--CCCCCcC
Confidence            35788888888888763     36778888888888888876  43  55555 88888888888755 44  7778888


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccc--------------
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEG--------------  205 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~--------------  205 (517)
                      ++|++++|.+++. +  ++.+++|++|++++|...+.+  .+..+++|++|++++|++++.. +..              
T Consensus       130 ~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          130 TYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             CEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcC
Confidence            8888888887753 2  566666666666666443333  3555666666666666655210 000              


Q ss_pred             -ccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceec
Q 036049          206 -KVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVN  284 (517)
Q Consensus       206 -~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  284 (517)
                       .+  .+..  +++|++|++++|++++++               +..+++|++|++++|++++ +|.   ..++.|+.++
T Consensus       204 ~~~--~l~~--l~~L~~L~Ls~N~l~~ip---------------~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~  260 (457)
T 3bz5_A          204 TKL--DLNQ--NIQLTFLDCSSNKLTEID---------------VTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLH  260 (457)
T ss_dssp             SCC--CCTT--CTTCSEEECCSSCCSCCC---------------CTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEE
T ss_pred             Cee--cccc--CCCCCEEECcCCcccccC---------------ccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEe
Confidence             11  1222  455555555555555431               4678999999999999985 453   3456666666


Q ss_pred             cCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcc--------cccCCCCCCeEe
Q 036049          285 ASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPA--------SISNLKGLQVLN  356 (517)
Q Consensus       285 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~--------~~~~l~~L~~L~  356 (517)
                      ++... +.........             ..+..  ....++.|+.|++++|...+.+|.        .+..+++|+.|+
T Consensus       261 l~~n~-L~~L~l~~n~-------------~~~~~--~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~  324 (457)
T 3bz5_A          261 CIQTD-LLEIDLTHNT-------------QLIYF--QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY  324 (457)
T ss_dssp             CTTCC-CSCCCCTTCT-------------TCCEE--ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             ccCCC-CCEEECCCCc-------------cCCcc--cccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence            55421 1110000000             00000  012357899999999988776664        256678999999


Q ss_pred             CcCccccccCChhccCCCCCCeeeCCCCcccccCccccc-------------cCCCCCEEeccCCcccccCCC
Q 036049          357 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV-------------ELTFLAFFNVSDNYLTGLIPQ  416 (517)
Q Consensus       357 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-------------~l~~L~~L~l~~N~l~~~~p~  416 (517)
                      +++|++++ ++  +..+++|+.|++++|++++. + .+.             .+..|+.+++++|+++|.+|.
T Consensus       325 L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          325 LNNTELTE-LD--VSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             CTTCCCSC-CC--CTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCT
T ss_pred             CCCCcccc-cc--cccCCcCcEEECCCCCCCCc-c-ccccccccCCcEEecceeeecCccccccCcEEEEcCh
Confidence            99999997 43  89999999999999999862 2 111             123456666777777776663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.9e-29  Score=246.73  Aligned_cols=232  Identities=18%  Similarity=0.228  Sum_probs=186.8

Q ss_pred             cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCcccc
Q 036049           85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE  164 (517)
Q Consensus        85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~  164 (517)
                      ..+++++|+|++|.++.  +|+.++.+. +|++|+|++|.+. .+|..|+++++|++|+|++|.++ .+|..|+++++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~--lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQ--FPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCCSS--CCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             cccceeEEEccCCCchh--cChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            35778888888888875  788788776 8888888888885 78888888888888888888888 6788888888888


Q ss_pred             EEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCC
Q 036049          165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE  244 (517)
Q Consensus       165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~  244 (517)
                      +|++++|.+.+.+|..+...                     .++..+..  +++|++|++++|.++.++.          
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~---------------------~~~~~~~~--l~~L~~L~L~~n~l~~lp~----------  200 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLAST---------------------DASGEHQG--LVNLQSLRLEWTGIRSLPA----------  200 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEE---------------------C-CCCEEE--STTCCEEEEEEECCCCCCG----------
T ss_pred             EEECCCCCCccccChhHhhc---------------------cchhhhcc--CCCCCEEECcCCCcCcchH----------
Confidence            88888887777777654431                     11112223  8999999999999986533          


Q ss_pred             CCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCc
Q 036049          245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKI  324 (517)
Q Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (517)
                         .+..+++|++|++++|.++ .+|                                                      
T Consensus       201 ---~l~~l~~L~~L~L~~N~l~-~l~------------------------------------------------------  222 (328)
T 4fcg_A          201 ---SIANLQNLKSLKIRNSPLS-ALG------------------------------------------------------  222 (328)
T ss_dssp             ---GGGGCTTCCEEEEESSCCC-CCC------------------------------------------------------
T ss_pred             ---hhcCCCCCCEEEccCCCCC-cCc------------------------------------------------------
Confidence               3578899999999999987 333                                                      


Q ss_pred             hhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEe
Q 036049          325 PDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN  404 (517)
Q Consensus       325 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  404 (517)
                                         ..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+
T Consensus       223 -------------------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          223 -------------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             -------------------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             -------------------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence                               2356678999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCCCC-CcCCccCCCcccCC
Q 036049          405 VSDNYLTGLIPQG-KQFATFDNTSFDGN  431 (517)
Q Consensus       405 l~~N~l~~~~p~~-~~~~~l~~~~~~~N  431 (517)
                      +++|++.+.+|+. ..+..+..+.+..|
T Consensus       284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          284 LRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCCCCchhhccHHHhhccCceEEeCCHH
Confidence            9999999999974 34555555555444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=9.5e-30  Score=246.85  Aligned_cols=254  Identities=24%  Similarity=0.302  Sum_probs=169.0

Q ss_pred             CcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcc
Q 036049           48 CCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG  127 (517)
Q Consensus        48 ~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  127 (517)
                      .|.|.++.|...            +++ .+|.  .+  .++|++|++++|.++.  +|..++...++|++|++++|.+..
T Consensus         6 ~C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~   66 (306)
T 2z66_A            6 SCSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSF   66 (306)
T ss_dssp             EEETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCE
T ss_pred             eeCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCc
Confidence            388988888642            333 2222  22  2577788888887765  665543333378888888877752


Q ss_pred             c--CCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCc-hhhhcCCcccccccccccCcceeccc
Q 036049          128 K--VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNSYGGTMEIE  204 (517)
Q Consensus       128 ~--~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~  204 (517)
                      .  .|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+     
T Consensus        67 ~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----  140 (306)
T 2z66_A           67 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-----  140 (306)
T ss_dssp             EEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-----
T ss_pred             ccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-----
Confidence            2  2455666778888888888777 466667778888888888888775444 467777888888888887762     


Q ss_pred             cccccccccccCCCCCeEeccCCcccc-cCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhccccccee
Q 036049          205 GKVHKWLLDPNMQNLNALNLSHNLLTG-FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV  283 (517)
Q Consensus       205 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L  283 (517)
                       ..+..+..  +++|++|++++|.+++ ..+.            .+..+++|++|++++|.+++..|             
T Consensus       141 -~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~-------------  192 (306)
T 2z66_A          141 -AFNGIFNG--LSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSP-------------  192 (306)
T ss_dssp             -CSTTTTTT--CTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECT-------------
T ss_pred             -cchhhccc--CcCCCEEECCCCccccccchh------------HHhhCcCCCEEECCCCCcCCcCH-------------
Confidence             33444444  7788888888888775 2221            34677888888888888763222             


Q ss_pred             ccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccc
Q 036049          284 NASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ  363 (517)
Q Consensus       284 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  363 (517)
                                                                                  ..+..+++|+.|+|++|+++
T Consensus       193 ------------------------------------------------------------~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          193 ------------------------------------------------------------TAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             ------------------------------------------------------------TTTTTCTTCCEEECTTSCCS
T ss_pred             ------------------------------------------------------------HHhcCCCCCCEEECCCCccC
Confidence                                                                        23445566777777777776


Q ss_pred             ccCChhccCCCCCCeeeCCCCcccccCccccccCC-CCCEEeccCCcccccC
Q 036049          364 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT-FLAFFNVSDNYLTGLI  414 (517)
Q Consensus       364 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~  414 (517)
                      +..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|++++..
T Consensus       213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            55555666777777777777777766666666663 6777777777776553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=6e-30  Score=253.46  Aligned_cols=279  Identities=18%  Similarity=0.185  Sum_probs=223.4

Q ss_pred             cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCcccc
Q 036049           85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE  164 (517)
Q Consensus        85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~  164 (517)
                      .++.....+++++.++.  +|..+.   ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~--iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNS--IPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             EECTTSEEECCSTTCSS--CCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCeEeeCCCCCccc--cccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            34455568899999987  787654   3899999999999776667899999999999999999988888999999999


Q ss_pred             EEEcccccccccCchhhhcCCcccccccccccCcceecccccccc--ccccccCCCCCeEeccCC-cccccCCCCCCCCC
Q 036049          165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK--WLLDPNMQNLNALNLSHN-LLTGFDQHLVLLPG  241 (517)
Q Consensus       165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ll~~  241 (517)
                      +|++++|.+++..+..|.++++|++|++++|+++       .+|.  .+..  +++|++|++++| .+++.++.      
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~l~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~------  168 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-------TLGETSLFSH--LTKLQILRVGNMDTFTKIQRK------  168 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-------SSCSSCSCTT--CTTCCEEEEEESSSCCEECTT------
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-------ccCchhhhcc--CCCCcEEECCCCccccccCHH------
Confidence            9999999999766666999999999999999997       5555  4445  999999999999 46665433      


Q ss_pred             CCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccC
Q 036049          242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAY  321 (517)
Q Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                            .+.++++|++|++++|.+++..|. .+..+                                            
T Consensus       169 ------~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l--------------------------------------------  197 (353)
T 2z80_A          169 ------DFAGLTFLEELEIDASDLQSYEPK-SLKSI--------------------------------------------  197 (353)
T ss_dssp             ------TTTTCCEEEEEEEEETTCCEECTT-TTTTC--------------------------------------------
T ss_pred             ------HccCCCCCCEEECCCCCcCccCHH-HHhcc--------------------------------------------
Confidence                  457889999999999999854443 34333                                            


Q ss_pred             CCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhcc---CCCCCCeeeCCCCcccc----cCcccc
Q 036049          322 NKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLG---NLTNLESLDLSNNKFSG----RIPQQL  394 (517)
Q Consensus       322 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l  394 (517)
                          ++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+.   ..+.++.++|+++.+.+    .+|..+
T Consensus       198 ----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l  273 (353)
T 2z80_A          198 ----QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL  273 (353)
T ss_dssp             ----SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred             ----ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence                3455566666776543333455689999999999999976554433   46778899999998876    477889


Q ss_pred             ccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCCCCCC
Q 036049          395 VELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       395 ~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      ..+++|++|++++|+++..++.. ..+..+..+++++||+.|+|+
T Consensus       274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            99999999999999999655543 578889999999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=9e-29  Score=239.96  Aligned_cols=113  Identities=21%  Similarity=0.293  Sum_probs=94.5

Q ss_pred             hhhhhhCCCCCCcc-cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049          327 ILAGIILSNKSFDG-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV  405 (517)
Q Consensus       327 ~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  405 (517)
                      .|+.|++++|.+.+ ..|..+..+++|+.|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence            34444455555544 45667888999999999999999888999999999999999999999877778999999999999


Q ss_pred             cCCcccccCCCC-CcC-CccCCCcccCCCCCCCCCC
Q 036049          406 SDNYLTGLIPQG-KQF-ATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       406 ~~N~l~~~~p~~-~~~-~~l~~~~~~~Np~~c~~~~  439 (517)
                      ++|++++..|.. ..+ ..+..+++++|++.|+|+.
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            999999988865 344 4788999999999998753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2.9e-29  Score=243.92  Aligned_cols=158  Identities=22%  Similarity=0.345  Sum_probs=135.1

Q ss_pred             CcEEEEEcCC-CCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           61 GHVVKLNLSH-SCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        61 ~~l~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      .+++.|+|++ |.+.+.+|.  .+.++++|++|+|++|.+++. +|..+..+. +|++|++++|.+.+.+|..|..+++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             CCCCeeeCCCCCcccccCCh--hHhcCCCCCEEECcCCeeCCc-CCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCC
Confidence            5799999995 999988887  899999999999999999864 788888887 99999999999988999999999999


Q ss_pred             cEEEccCCcccccccccccCCc-cccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCC
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLR-SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN  218 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~  218 (517)
                      ++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++      .+|..+..  +++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~------~~~~~~~~--l~~  222 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG------DASVLFGS--DKN  222 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE------CCGGGCCT--TSC
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC------cCCHHHhc--CCC
Confidence            9999999999999999999998 999999999999999999999887 9999998887763      34444443  555


Q ss_pred             CCeEeccCCcccc
Q 036049          219 LNALNLSHNLLTG  231 (517)
Q Consensus       219 L~~L~Ls~n~l~~  231 (517)
                      |++|++++|.+++
T Consensus       223 L~~L~L~~N~l~~  235 (313)
T 1ogq_A          223 TQKIHLAKNSLAF  235 (313)
T ss_dssp             CSEEECCSSEECC
T ss_pred             CCEEECCCCceee
Confidence            5555555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=5.5e-29  Score=261.80  Aligned_cols=286  Identities=20%  Similarity=0.220  Sum_probs=227.4

Q ss_pred             CCCCCCCCCCCCCCcccceeec------CCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh
Q 036049           35 TMASWKPEEGNVDCCSWDGVHC------NKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI  108 (517)
Q Consensus        35 ~~~~w~~~~~~~~~C~w~gv~c------~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  108 (517)
                      ....|..   ..+||.|+|..|      ......++.|++++|.++ .+|.  .+.  ++|++|++++|.++.  +|.  
T Consensus        11 ~w~~W~~---~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~--   78 (622)
T 3g06_A           11 VWSAWRR---AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA--   78 (622)
T ss_dssp             HHHHHHH---TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC--
T ss_pred             HHHHHHh---cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC--
Confidence            3456765   568899976432      111235899999999998 4554  443  799999999999986  776  


Q ss_pred             hhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccc
Q 036049          109 INLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV  188 (517)
Q Consensus       109 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  188 (517)
                       .+. +|++|+|++|.++ .+|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|..   +++|+
T Consensus        79 -~l~-~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~  144 (622)
T 3g06_A           79 -LPP-ELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQ  144 (622)
T ss_dssp             -CCT-TCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred             -cCC-CCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCC
Confidence             334 9999999999995 5665   77999999999999995 555   56899999999999984 5553   58999


Q ss_pred             ccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCC
Q 036049          189 VLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGK  268 (517)
Q Consensus       189 ~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  268 (517)
                      +|++++|.++       .+|..     +++|+.|++++|.+++++                ..+++|+.|++++|.++ .
T Consensus       145 ~L~Ls~N~l~-------~l~~~-----~~~L~~L~L~~N~l~~l~----------------~~~~~L~~L~Ls~N~l~-~  195 (622)
T 3g06_A          145 ELSVSDNQLA-------SLPAL-----PSELCKLWAYNNQLTSLP----------------MLPSGLQELSVSDNQLA-S  195 (622)
T ss_dssp             EEECCSSCCS-------CCCCC-----CTTCCEEECCSSCCSCCC----------------CCCTTCCEEECCSSCCS-C
T ss_pred             EEECcCCcCC-------CcCCc-----cCCCCEEECCCCCCCCCc----------------ccCCCCcEEECCCCCCC-C
Confidence            9999999997       44432     678999999999999864                23689999999999998 5


Q ss_pred             CChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccC
Q 036049          269 LPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISN  348 (517)
Q Consensus       269 ~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  348 (517)
                      +|..    .++|+.|+++++....                            +...+++|+.|++++|.+++ +|   ..
T Consensus       196 l~~~----~~~L~~L~L~~N~l~~----------------------------l~~~~~~L~~L~Ls~N~L~~-lp---~~  239 (622)
T 3g06_A          196 LPTL----PSELYKLWAYNNRLTS----------------------------LPALPSGLKELIVSGNRLTS-LP---VL  239 (622)
T ss_dssp             CCCC----CTTCCEEECCSSCCSS----------------------------CCCCCTTCCEEECCSSCCSC-CC---CC
T ss_pred             CCCc----cchhhEEECcCCcccc----------------------------cCCCCCCCCEEEccCCccCc-CC---CC
Confidence            6642    4677788777632111                            11124779999999999995 55   45


Q ss_pred             CCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCC
Q 036049          349 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ  416 (517)
Q Consensus       349 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  416 (517)
                      +++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            689999999999999 5665   5789999999999999 7899999999999999999999988775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=4.9e-28  Score=247.03  Aligned_cols=301  Identities=22%  Similarity=0.296  Sum_probs=180.4

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .+++.|++++|.+++. +.   +  .++|++|++++|.+++  +| .+..+. +|++|++++|.+.+ +|..+   .+|+
T Consensus       111 ~~L~~L~l~~n~l~~l-~~---~--~~~L~~L~L~~n~l~~--lp-~~~~l~-~L~~L~l~~N~l~~-lp~~~---~~L~  176 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKAL-SD---L--PPLLEYLGVSNNQLEK--LP-ELQNSS-FLKIIDVDNNSLKK-LPDLP---PSLE  176 (454)
T ss_dssp             TTCCEEECCSSCCSCC-CS---C--CTTCCEEECCSSCCSS--CC-CCTTCT-TCCEEECCSSCCSC-CCCCC---TTCC
T ss_pred             CCCcEEECCCCccCcc-cC---C--CCCCCEEECcCCCCCC--Cc-ccCCCC-CCCEEECCCCcCcc-cCCCc---cccc
Confidence            4677777777776542 11   1  1689999999999986  67 466666 99999999999854 66543   5899


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      +|++++|.+++ +| .|+++++|++|++++|.+++ +|..   .++|++|++++|.++       .+|. +..  +++|+
T Consensus       177 ~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-------~lp~-~~~--l~~L~  240 (454)
T 1jl5_A          177 FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-------ELPE-LQN--LPFLT  240 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-------SCCC-CTT--CTTCC
T ss_pred             EEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-------cccc-cCC--CCCCC
Confidence            99999999986 56 68999999999999999885 4443   258999999999887       5563 455  88999


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK  300 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  300 (517)
                      +|++++|++++++.                .+++|++|++++|+++ .+|..    .++|+.|+++++.... .. . .+
T Consensus       241 ~L~l~~N~l~~l~~----------------~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ls~N~l~~-l~-~-~~  296 (454)
T 1jl5_A          241 TIYADNNLLKTLPD----------------LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSG-LS-E-LP  296 (454)
T ss_dssp             EEECCSSCCSSCCS----------------CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSE-ES-C-CC
T ss_pred             EEECCCCcCCcccc----------------cccccCEEECCCCccc-ccCcc----cCcCCEEECcCCccCc-cc-C-cC
Confidence            99999999887532                2368888999988887 46642    3677888877643221 00 0 00


Q ss_pred             cchhhhccceeeeecCccc-cCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049          301 LLMTTYDYLLTMNIKGRMM-AYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL  379 (517)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  379 (517)
                            ..+..+.+.+... .....+..|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|++|
T Consensus       297 ------~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L  362 (454)
T 1jl5_A          297 ------PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQL  362 (454)
T ss_dssp             ------TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred             ------CcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEE
Confidence                  0111111111100 011223567777777777764 4443   466777777777776 4554   35677777


Q ss_pred             eCCCCcccc--cCccccccC-------------CCCCEEeccCCcccc--cCCCCCcCCccCCCcccCCCCC
Q 036049          380 DLSNNKFSG--RIPQQLVEL-------------TFLAFFNVSDNYLTG--LIPQGKQFATFDNTSFDGNSGL  434 (517)
Q Consensus       380 ~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~l~~~~~~~Np~~  434 (517)
                      ++++|++++  .+|..+..+             ++|++|++++|++++  .+|.     ++..+.+.+|...
T Consensus       363 ~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~  429 (454)
T 1jl5_A          363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVV  429 (454)
T ss_dssp             ECCSSCCSSCCCCCTTCCEEECCC------------------------------------------------
T ss_pred             ECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhheeCcCcccC
Confidence            777777776  566666655             667777777777775  4442     2344445554433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.5e-28  Score=235.85  Aligned_cols=133  Identities=17%  Similarity=0.136  Sum_probs=62.0

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccccc-ccccCchhhhcCCccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN-FSGQITSSLRNLTELVVLDM  192 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l  192 (517)
                      +|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. +....|..|..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444443333444444555555555555544444444455555555555554 44333444444444444444


Q ss_pred             ccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049          193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT  266 (517)
Q Consensus       193 ~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (517)
                      ++|.+++      ..+..+..  +++|++|++++|.+++.++.            .+..+++|++|++++|+++
T Consensus       113 ~~n~l~~------~~~~~~~~--l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A          113 DRCGLQE------LGPGLFRG--LAALQYLYLQDNALQALPDD------------TFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             TTSCCCC------CCTTTTTT--CTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCE------ECHhHhhC--CcCCCEEECCCCcccccCHh------------HhccCCCccEEECCCCccc
Confidence            4444431      11222222  45555555555555443322            2344556666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=6.4e-31  Score=255.70  Aligned_cols=254  Identities=22%  Similarity=0.208  Sum_probs=164.4

Q ss_pred             cccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCC-cccCCccCC-------CCCCCcEEEccCCccccccc
Q 036049           83 LYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF-WGKVPHSIG-------NFTRLQFLYLGFNNFSGDLL  154 (517)
Q Consensus        83 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~i~~~~p  154 (517)
                      ++..++|++|++++|.+ .  +|..+...   |++|++++|.+ ...+|..+.       ++++|++|++++|.+++.+|
T Consensus        39 ~~~~~~L~~l~l~~n~l-~--~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-A--DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-C--CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EccCCCceeEeeccccc-c--cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            34455667777777777 2  66655543   66667777766 234554444       56777777777777776666


Q ss_pred             ccc--cCCccccEEEcccccccccCchhhhcC-----CcccccccccccCcceeccccccccccccccCCCCCeEeccCC
Q 036049          155 GSI--GNLRSLEAIYMSKCNFSGQITSSLRNL-----TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN  227 (517)
Q Consensus       155 ~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  227 (517)
                      ..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++      ..+..+..  +++|++|++++|
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~------~~~~~~~~--l~~L~~L~Ls~N  183 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN------FSCEQVRV--FPALSTLDLSDN  183 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC------CCTTTCCC--CSSCCEEECCSC
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc------chHHHhcc--CCCCCEEECCCC
Confidence            665  6777777777777777755 6666665     677777777777652      22244444  777777777777


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC--CCChhhhhcccccceeccCcccccccccCCCcccchhh
Q 036049          228 LLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG--KLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTT  305 (517)
Q Consensus       228 ~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  305 (517)
                      ++.+..+.        +....+..+++|++|++++|++++  .++...+..                             
T Consensus       184 ~l~~~~~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-----------------------------  226 (312)
T 1wwl_A          184 PELGERGL--------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA-----------------------------  226 (312)
T ss_dssp             TTCHHHHH--------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT-----------------------------
T ss_pred             CcCcchHH--------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc-----------------------------
Confidence            76542100        000012556777777777777762  111111111                             


Q ss_pred             hccceeeeecCccccCCCchhhhhhhhCCCCCCcccCc-ccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCC
Q 036049          306 YDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIP-ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN  384 (517)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  384 (517)
                                         .+.|+.|++++|.+++..| ..+..+++|++|+|++|+++ .+|..+.  ++|++|+|++|
T Consensus       227 -------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N  284 (312)
T 1wwl_A          227 -------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN  284 (312)
T ss_dssp             -------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred             -------------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence                               2345556666666665553 34556788999999999988 7777665  78999999999


Q ss_pred             cccccCccccccCCCCCEEeccCCcccc
Q 036049          385 KFSGRIPQQLVELTFLAFFNVSDNYLTG  412 (517)
Q Consensus       385 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~  412 (517)
                      +|++. |. +..+++|++|++++|++++
T Consensus       285 ~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          285 RLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            99855 55 8888899999999998875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.9e-27  Score=242.67  Aligned_cols=301  Identities=20%  Similarity=0.223  Sum_probs=178.1

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .+++.|++++|.+++ +|.  .   +++|++|++++|.+++  ++.    ..++|++|++++|.+.+ +| .|+++++|+
T Consensus        91 ~~L~~L~l~~n~l~~-lp~--~---~~~L~~L~l~~n~l~~--l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~  156 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPE--L---PQSLKSLLVDNNNLKA--LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLK  156 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCC--C---CTTCCEEECCSSCCSC--CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred             CCCCEEEccCCcCCc-ccc--c---cCCCcEEECCCCccCc--ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence            456777777777665 332  2   3667777777777765  332    11377777777777754 56 477777777


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      +|++++|++++ +|..+   .+|++|++++|.+++ +| .+.++++|++|++++|.++       .+|..     .++|+
T Consensus       157 ~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-------~l~~~-----~~~L~  218 (454)
T 1jl5_A          157 IIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-------KLPDL-----PLSLE  218 (454)
T ss_dssp             EEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-------SCCCC-----CTTCC
T ss_pred             EEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-------cCCCC-----cCccc
Confidence            77777777774 45433   467777777777774 44 4677777777777777766       33332     34677


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK  300 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  300 (517)
                      +|++++|.++.++              .+..+++|++|++++|+++ .+|.    ..++|+.|+++++....  ++..  
T Consensus       219 ~L~l~~n~l~~lp--------------~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~--l~~~--  275 (454)
T 1jl5_A          219 SIVAGNNILEELP--------------ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD--LPEL--  275 (454)
T ss_dssp             EEECCSSCCSSCC--------------CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC--CCCC--
T ss_pred             EEECcCCcCCccc--------------ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc--cCcc--
Confidence            7777777776442              1367788888888888887 4553    23677777777643221  0000  


Q ss_pred             cchhhhccceeeeecCccc-cCCCchhhhhhhhCCCCCCcccCcccccCC-CCCCeEeCcCccccccCChhccCCCCCCe
Q 036049          301 LLMTTYDYLLTMNIKGRMM-AYNKIPDILAGIILSNKSFDGAIPASISNL-KGLQVLNLHNNNLQGHIPSCLGNLTNLES  378 (517)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  378 (517)
                           ...+..+.+.+... .....++.|+.|++++|.+++. +    .+ ++|+.|++++|++++ +|..   +++|++
T Consensus       276 -----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~  341 (454)
T 1jl5_A          276 -----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLER  341 (454)
T ss_dssp             -----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred             -----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCE
Confidence                 01111122211111 1112346777778888777742 2    22 478888888888874 5543   478888


Q ss_pred             eeCCCCcccccCccccccCCCCCEEeccCCcccc--cCCCC-CcC-------------CccCCCcccCCCCC
Q 036049          379 LDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG--LIPQG-KQF-------------ATFDNTSFDGNSGL  434 (517)
Q Consensus       379 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~--~~p~~-~~~-------------~~l~~~~~~~Np~~  434 (517)
                      |++++|+++ .+|.   .+++|++|++++|++++  .+|.. ..+             ..++.+++++|+..
T Consensus       342 L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          342 LIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             EECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             EECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            888888887 4665   46788888888888887  45543 122             45666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.2e-27  Score=244.97  Aligned_cols=246  Identities=19%  Similarity=0.181  Sum_probs=195.6

Q ss_pred             EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049           65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL  144 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  144 (517)
                      .++.++.+++. +|.  .+  .++|++|+|++|.++.. .+..+..+. +|++|+|++|.+.+..+..|.++++|++|+|
T Consensus        58 ~v~c~~~~l~~-iP~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           58 KVVCTRRGLSE-VPQ--GI--PSNTRYLNLMENNIQMI-QADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             EEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEE-CTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEEECCCCcCc-cCC--CC--CCCccEEECcCCcCceE-CHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            44555556653 333  23  26889999999999873 345555666 9999999999998888888999999999999


Q ss_pred             cCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEe
Q 036049          145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALN  223 (517)
Q Consensus       145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~  223 (517)
                      ++|.++...+..|..+++|++|+|++|.++...+..|.++++|++|++++|...+      .++.. +..  +++|++|+
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~--l~~L~~L~  202 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------YISEGAFEG--LFNLKYLN  202 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTT--CTTCCEEE
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc------ccChhhccC--CCCCCEEE
Confidence            9999997777778999999999999999997777789999999999999854332      44443 334  89999999


Q ss_pred             ccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccch
Q 036049          224 LSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLM  303 (517)
Q Consensus       224 Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  303 (517)
                      +++|.+++++.              +..+++|++|++++|.+++ ++...|..                           
T Consensus       203 L~~n~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~~---------------------------  240 (452)
T 3zyi_A          203 LGMCNIKDMPN--------------LTPLVGLEELEMSGNHFPE-IRPGSFHG---------------------------  240 (452)
T ss_dssp             CTTSCCSSCCC--------------CTTCTTCCEEECTTSCCSE-ECGGGGTT---------------------------
T ss_pred             CCCCccccccc--------------ccccccccEEECcCCcCcc-cCcccccC---------------------------
Confidence            99999987632              3678899999999999984 43333433                           


Q ss_pred             hhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC
Q 036049          304 TTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN  383 (517)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  383 (517)
                                           .++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus       241 ---------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          241 ---------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             ---------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred             ---------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence                                 34566677888888888888899999999999999999977778889999999999999


Q ss_pred             Ccccc
Q 036049          384 NKFSG  388 (517)
Q Consensus       384 N~l~~  388 (517)
                      |.+.-
T Consensus       300 Np~~C  304 (452)
T 3zyi_A          300 NPWNC  304 (452)
T ss_dssp             SCEEC
T ss_pred             CCcCC
Confidence            98863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=243.11  Aligned_cols=245  Identities=20%  Similarity=0.186  Sum_probs=185.4

Q ss_pred             EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049           65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL  144 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  144 (517)
                      .++.++..++. +|.  .+  .+++++|+|++|+++.. .+..+..+. +|++|+|++|.+.+..+..|.++++|++|+|
T Consensus        47 ~v~c~~~~l~~-iP~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           47 KVICVRKNLRE-VPD--GI--STNTRLLNLHENQIQII-KVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             EEECCSCCCSS-CCS--CC--CTTCSEEECCSCCCCEE-CTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             EEEeCCCCcCc-CCC--CC--CCCCcEEEccCCcCCee-CHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            45555666653 333  23  26788888888888763 234455555 8888888888887777778888888888888


Q ss_pred             cCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEe
Q 036049          145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALN  223 (517)
Q Consensus       145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~  223 (517)
                      ++|+++...+..|..+++|++|+|++|.++...+..|.++++|++|++++|...+      .++.. +..  +++|++|+
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~--l~~L~~L~  191 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS------YISEGAFEG--LSNLRYLN  191 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTT--CSSCCEEE
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc------eeCcchhhc--ccccCeec
Confidence            8888886666678888888888888888887777788888888888888854332      34442 333  88888899


Q ss_pred             ccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccch
Q 036049          224 LSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLM  303 (517)
Q Consensus       224 Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  303 (517)
                      +++|.++.++.              +..+++|++|+|++|++++ ++...|..                           
T Consensus       192 L~~n~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~~---------------------------  229 (440)
T 3zyj_A          192 LAMCNLREIPN--------------LTPLIKLDELDLSGNHLSA-IRPGSFQG---------------------------  229 (440)
T ss_dssp             CTTSCCSSCCC--------------CTTCSSCCEEECTTSCCCE-ECTTTTTT---------------------------
T ss_pred             CCCCcCccccc--------------cCCCcccCEEECCCCccCc-cChhhhcc---------------------------
Confidence            98888886532              3677889999999998874 33333333                           


Q ss_pred             hhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC
Q 036049          304 TTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN  383 (517)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  383 (517)
                                           .+.|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus       230 ---------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          230 ---------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             ---------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             ---------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence                                 34566677777888878888899999999999999999987778889999999999999


Q ss_pred             Cccc
Q 036049          384 NKFS  387 (517)
Q Consensus       384 N~l~  387 (517)
                      |.+.
T Consensus       289 Np~~  292 (440)
T 3zyj_A          289 NPWN  292 (440)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            9886

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.4e-29  Score=244.54  Aligned_cols=244  Identities=23%  Similarity=0.255  Sum_probs=199.2

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccc-cccccccc-------CCccccEEEcccccccccCchhh--hc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFS-GDLLGSIG-------NLRSLEAIYMSKCNFSGQITSSL--RN  183 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~l--~~  183 (517)
                      +|++|++++|.+  .+|..+...  |++|++++|.+. ..+|..+.       ++++|++|++++|.+++.+|..+  ..
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            899999999999  778777654  999999999994 45666665       79999999999999998888876  89


Q ss_pred             CCcccccccccccCcceeccccccccccccccC-----CCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEE
Q 036049          184 LTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNM-----QNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRII  258 (517)
Q Consensus       184 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L  258 (517)
                      +++|++|++++|.+++       +|..+..  +     ++|++|++++|++++.++.            .+..+++|++|
T Consensus       120 l~~L~~L~Ls~N~l~~-------~~~~~~~--l~~~~~~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L  178 (312)
T 1wwl_A          120 GPDLNILNLRNVSWAT-------RDAWLAE--LQQWLKPGLKVLSIAQAHSLNFSCE------------QVRVFPALSTL  178 (312)
T ss_dssp             SCCCSEEEEESCBCSS-------SSSHHHH--HHTTCCTTCCEEEEESCSCCCCCTT------------TCCCCSSCCEE
T ss_pred             CCCccEEEccCCCCcc-------hhHHHHH--HHHhhcCCCcEEEeeCCCCccchHH------------HhccCCCCCEE
Confidence            9999999999999983       3544444  4     8999999999999987644            46789999999


Q ss_pred             EccCCcCCCCCC--hhh-hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCC
Q 036049          259 DLSDNRFTGKLP--SKS-FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSN  335 (517)
Q Consensus       259 ~Ls~N~l~~~~p--~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  335 (517)
                      ++++|++.+.++  ... +..                                                .+.|++|++++
T Consensus       179 ~Ls~N~l~~~~~~~~~~~~~~------------------------------------------------l~~L~~L~L~~  210 (312)
T 1wwl_A          179 DLSDNPELGERGLISALCPLK------------------------------------------------FPTLQVLALRN  210 (312)
T ss_dssp             ECCSCTTCHHHHHHHHSCTTS------------------------------------------------CTTCCEEECTT
T ss_pred             ECCCCCcCcchHHHHHHHhcc------------------------------------------------CCCCCEEECCC
Confidence            999999875422  110 111                                                45677788888


Q ss_pred             CCCcc--cCc-ccccCCCCCCeEeCcCccccccCC-hhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049          336 KSFDG--AIP-ASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       336 n~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  411 (517)
                      |.+++  .++ ..+..+++|+.|+|++|++++..| ..+..+++|++|+|++|+|+ .+|..+.  ++|++|++++|+|+
T Consensus       211 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred             CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence            88873  222 345678999999999999997775 45677899999999999999 7887776  89999999999999


Q ss_pred             ccCCCCCcCCccCCCcccCCCCC
Q 036049          412 GLIPQGKQFATFDNTSFDGNSGL  434 (517)
Q Consensus       412 ~~~p~~~~~~~l~~~~~~~Np~~  434 (517)
                      +. |....+..++.+++++|++.
T Consensus       288 ~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          288 RN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SC-CCTTTSCEEEEEECTTCTTT
T ss_pred             CC-hhHhhCCCCCEEeccCCCCC
Confidence            88 66778889999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.6e-27  Score=226.27  Aligned_cols=251  Identities=20%  Similarity=0.196  Sum_probs=194.2

Q ss_pred             EEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049           64 VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL  142 (517)
Q Consensus        64 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  142 (517)
                      +.++.++++++.. |.  .  -.++|++|++++|.++.  +++ .+..+. +|++|++++|.+.+..|..|.++++|++|
T Consensus        14 ~~~~c~~~~l~~i-p~--~--~~~~l~~L~l~~n~i~~--~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PV--G--IPAASQRIFLHGNRISH--VPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQL   85 (285)
T ss_dssp             CEEECCSSCCSSC-CT--T--CCTTCSEEECTTSCCCE--ECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             eEEEcCcCCcccC-Cc--C--CCCCceEEEeeCCcCCc--cCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEE
Confidence            5677788887643 33  2  25689999999999987  554 455555 99999999999988888999999999999


Q ss_pred             EccCCc-ccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCC
Q 036049          143 YLGFNN-FSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLN  220 (517)
Q Consensus       143 ~Ls~n~-i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~  220 (517)
                      ++++|. +....|..|..+++|++|++++|.+++..|..|.++++|++|++++|.++       .++. .+..  +++|+
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~--l~~L~  156 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------ALPDDTFRD--LGNLT  156 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTT--CTTCC
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------ccCHhHhcc--CCCcc
Confidence            999997 88766888999999999999999999888888999999999999999987       4443 3445  89999


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK  300 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  300 (517)
                      +|++++|+++++++.            .+..+++|++|++++|.+++.                                
T Consensus       157 ~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~--------------------------------  192 (285)
T 1ozn_A          157 HLFLHGNRISSVPER------------AFRGLHSLDRLLLHQNRVAHV--------------------------------  192 (285)
T ss_dssp             EEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCEE--------------------------------
T ss_pred             EEECCCCcccccCHH------------HhcCccccCEEECCCCccccc--------------------------------
Confidence            999999999987543            346788899999988888632                                


Q ss_pred             cchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeee
Q 036049          301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD  380 (517)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  380 (517)
                                                               .|..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus       193 -----------------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          193 -----------------------------------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             -----------------------------------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             -----------------------------------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence                                                     233455677888888888888866666788888888888


Q ss_pred             CCCCcccccCccccccCCCCCEEeccCCcccccCCCC
Q 036049          381 LSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG  417 (517)
Q Consensus       381 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  417 (517)
                      |++|.+....+.. .-...++.+..+.+.+.+..|..
T Consensus       232 l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          232 LNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            8888887433211 11123444456677777777753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-28  Score=239.68  Aligned_cols=216  Identities=19%  Similarity=0.169  Sum_probs=107.5

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      +|++|++++|.+.+..|..|..+++|++|+|++|.+++..+  |..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence            55555555555544444455555555555555555553332  555555555555555554221     22555555555


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS  273 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  273 (517)
                      +|.+++       ++..    .+++|++|++++|++++..+.            .+..+++|++|++++|.+++..+...
T Consensus       108 ~n~l~~-------~~~~----~~~~L~~L~l~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A          108 NNNISR-------VSCS----RGQGKKNIYLANNKITMLRDL------------DEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             SSCCSE-------EEEC----CCSSCEEEECCSSCCCSGGGB------------CTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             CCccCC-------cCcc----ccCCCCEEECCCCCCCCccch------------hhhccCCCCEEECCCCCCCcccHHHH
Confidence            555542       1111    144566666666666554332            23445566666666666653222221


Q ss_pred             hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049          274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ  353 (517)
Q Consensus       274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  353 (517)
                      +..+                                                +.|+.|++++|.+++. +. ...+++|+
T Consensus       165 ~~~l------------------------------------------------~~L~~L~L~~N~l~~~-~~-~~~l~~L~  194 (317)
T 3o53_A          165 AASS------------------------------------------------DTLEHLNLQYNFIYDV-KG-QVVFAKLK  194 (317)
T ss_dssp             GGGT------------------------------------------------TTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred             hhcc------------------------------------------------CcCCEEECCCCcCccc-cc-ccccccCC
Confidence            1122                                                2333444444444432 11 12355566


Q ss_pred             eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049          354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  411 (517)
                      +|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus       195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            66666666553 3333555556666666666555 34555555556666666666555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.7e-27  Score=243.82  Aligned_cols=254  Identities=19%  Similarity=0.176  Sum_probs=181.8

Q ss_pred             Cchhhhhcc---cCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchh
Q 036049          104 IQPEIINLS---CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS  180 (517)
Q Consensus       104 ~~~~~~~~~---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  180 (517)
                      +|..+..+.   ++|++|+|++|.+.+..|..|+.+++|++|+|++|.+++..|  |..+++|++|+|++|.+++..+  
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~--   97 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV--   97 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--
Confidence            455554433   278888888888877667788888888888888888876554  7888888888888888874332  


Q ss_pred             hhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEc
Q 036049          181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL  260 (517)
Q Consensus       181 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~L  260 (517)
                         .++|++|++++|.+++       ++..  .  +++|++|++++|.+++..+.            .+..+++|++|++
T Consensus        98 ---~~~L~~L~L~~N~l~~-------~~~~--~--l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L  151 (487)
T 3oja_A           98 ---GPSIETLHAANNNISR-------VSCS--R--GQGKKNIYLANNKITMLRDL------------DEGCRSRVQYLDL  151 (487)
T ss_dssp             ---CTTCCEEECCSSCCCC-------EEEC--C--CSSCEEEECCSSCCCSGGGB------------CGGGGSSEEEEEC
T ss_pred             ---CCCcCEEECcCCcCCC-------CCcc--c--cCCCCEEECCCCCCCCCCch------------hhcCCCCCCEEEC
Confidence               3788888888888773       2221  1  67788888888888876543            3466788888888


Q ss_pred             cCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcc
Q 036049          261 SDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDG  340 (517)
Q Consensus       261 s~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  340 (517)
                      ++|.+++..|......                                                ++.|+.|+|++|.+++
T Consensus       152 s~N~l~~~~~~~l~~~------------------------------------------------l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          152 KLNEIDTVNFAELAAS------------------------------------------------SDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             TTSCCCEEEGGGGGGG------------------------------------------------TTTCCEEECTTSCCCE
T ss_pred             CCCCCCCcChHHHhhh------------------------------------------------CCcccEEecCCCcccc
Confidence            8888886555432222                                                3456666777777775


Q ss_pred             cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc-ccCCC-CC
Q 036049          341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT-GLIPQ-GK  418 (517)
Q Consensus       341 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~-~~  418 (517)
                      . | ....+++|+.|+|++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++ +.+|. ..
T Consensus       184 ~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 V-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             E-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             c-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            5 2 234588999999999999854 4458889999999999999984 6777888899999999999988 33332 12


Q ss_pred             cCCccCCCccc-------CCCCCCCCCC
Q 036049          419 QFATFDNTSFD-------GNSGLCGKPL  439 (517)
Q Consensus       419 ~~~~l~~~~~~-------~Np~~c~~~~  439 (517)
                      .+..+..+++.       +|++.|.++.
T Consensus       260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          260 KNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             TCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             hCCCCcEEeccccccccCCCcccccCCc
Confidence            34444444444       7888887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-27  Score=231.98  Aligned_cols=242  Identities=18%  Similarity=0.171  Sum_probs=198.2

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      .++.++++.+.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            56667777777755555556678899999999999998888899999999999999999986554  8999999999999


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS  273 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  273 (517)
                      +|.++       .++.      .++|++|++++|.+++.++.               .+++|++|++++|++++ ++...
T Consensus        89 ~n~l~-------~l~~------~~~L~~L~l~~n~l~~~~~~---------------~~~~L~~L~l~~N~l~~-~~~~~  139 (317)
T 3o53_A           89 NNYVQ-------ELLV------GPSIETLHAANNNISRVSCS---------------RGQGKKNIYLANNKITM-LRDLD  139 (317)
T ss_dssp             SSEEE-------EEEE------CTTCCEEECCSSCCSEEEEC---------------CCSSCEEEECCSSCCCS-GGGBC
T ss_pred             CCccc-------cccC------CCCcCEEECCCCccCCcCcc---------------ccCCCCEEECCCCCCCC-ccchh
Confidence            99987       3332      68999999999999987543               36789999999999984 33322


Q ss_pred             hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccc-cCCCCC
Q 036049          274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASI-SNLKGL  352 (517)
Q Consensus       274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L  352 (517)
                      +..                                                .+.|+.|++++|.+++..+..+ ..+++|
T Consensus       140 ~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A          140 EGC------------------------------------------------RSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (317)
T ss_dssp             TGG------------------------------------------------GSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             hhc------------------------------------------------cCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence            222                                                4567778888898887767666 478999


Q ss_pred             CeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCC
Q 036049          353 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNS  432 (517)
Q Consensus       353 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np  432 (517)
                      ++|+|++|.+++. +. ...+++|++|+|++|++++ +|..+..+++|++|++++|++++.++....+..++.+++++|+
T Consensus       172 ~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          172 EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             CEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence            9999999999855 43 3458999999999999995 4556999999999999999999776655677889999999999


Q ss_pred             CCCCC
Q 036049          433 GLCGK  437 (517)
Q Consensus       433 ~~c~~  437 (517)
                      +.|++
T Consensus       249 ~~~~~  253 (317)
T 3o53_A          249 FHCGT  253 (317)
T ss_dssp             CBHHH
T ss_pred             ccCcC
Confidence            99864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=6.1e-27  Score=241.23  Aligned_cols=235  Identities=19%  Similarity=0.152  Sum_probs=128.9

Q ss_pred             CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEE
Q 036049           88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY  167 (517)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~  167 (517)
                      +|++|+|++|.+++. .|..+..+. +|++|+|++|.+.+..|  |+.+++|++|+|++|.+++..+     .++|++|+
T Consensus        35 ~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           35 NVKELDLSGNPLSQI-SAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GCCEEECCSSCCCCC-CGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CccEEEeeCCcCCCC-CHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            455555555555442 223333333 55555555555543333  5555555555555555553211     14555555


Q ss_pred             cccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCC
Q 036049          168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR  247 (517)
Q Consensus       168 L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~  247 (517)
                      +++|.+++..+.   .+++|++|++++|.+++      ..|..+..  +++|++|++++|.+++.++..           
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~------~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~-----------  163 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITM------LRDLDEGC--RSRVQYLDLKLNEIDTVNFAE-----------  163 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCS------GGGBCGGG--GSSEEEEECTTSCCCEEEGGG-----------
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCC------CCchhhcC--CCCCCEEECCCCCCCCcChHH-----------
Confidence            555555543332   23455555555555542      22333333  455555555555555433221           


Q ss_pred             CCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhh
Q 036049          248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI  327 (517)
Q Consensus       248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                      ....+++|++|+|++|.+++. |...                                                  .++.
T Consensus       164 l~~~l~~L~~L~Ls~N~l~~~-~~~~--------------------------------------------------~l~~  192 (487)
T 3oja_A          164 LAASSDTLEHLNLQYNFIYDV-KGQV--------------------------------------------------VFAK  192 (487)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE-ECCC--------------------------------------------------CCTT
T ss_pred             HhhhCCcccEEecCCCccccc-cccc--------------------------------------------------cCCC
Confidence            011345555555555555421 1100                                                  0234


Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc-ccCccccccCCCCCEEecc
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS-GRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~  406 (517)
                      |+.|++++|.+++. |..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       193 L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          193 LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            45555555555543 334677788999999999988 46777888889999999999887 5677778888888888876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=7.4e-29  Score=254.77  Aligned_cols=134  Identities=22%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             cEEEEEcCCCCceee----eCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhccc----CCcEEEccCCCCcc----cC
Q 036049           62 HVVKLNLSHSCLFGS----INSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC----SLKLLDLRSCGFWG----KV  129 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~----~L~~L~Ls~n~l~~----~~  129 (517)
                      ++++|+|++|.+++.    ++.  .+..+++|++|+|++|.+... .+..+.....    +|++|++++|.+..    .+
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISS--ALRVNPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHH--HHHTCTTCCEEECTTCCCHHH-HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHH--HHHhCCCcCEEeCCCCcCChH-HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            455566666555421    222  444555666666666655432 2223333222    36666666666542    33


Q ss_pred             CccCCCCCCCcEEEccCCccccccccccc-----CCccccEEEccccccccc----CchhhhcCCcccccccccccCc
Q 036049          130 PHSIGNFTRLQFLYLGFNNFSGDLLGSIG-----NLRSLEAIYMSKCNFSGQ----ITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       130 p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            55555566666666666665543333222     134566666666655542    2344445556666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.1e-25  Score=231.04  Aligned_cols=259  Identities=19%  Similarity=0.174  Sum_probs=209.6

Q ss_pred             CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049           87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI  166 (517)
Q Consensus        87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L  166 (517)
                      .++++|++++|.++.  +|..+.   ++|++|++++|.+. .+|.   .+++|++|+|++|.++ .+|.   .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~~--lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLTT--LPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCSC--CCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCcCc--cChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEE
Confidence            469999999999986  787665   49999999999995 5665   5789999999999999 4665   67999999


Q ss_pred             EcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCC
Q 036049          167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEP  246 (517)
Q Consensus       167 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~  246 (517)
                      ++++|.+++ +|.   .+++|++|++++|+++       .+|..     +++|++|++++|.+++++.            
T Consensus       107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-------~lp~~-----l~~L~~L~Ls~N~l~~l~~------------  158 (622)
T 3g06_A          107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-------SLPVL-----PPGLQELSVSDNQLASLPA------------  158 (622)
T ss_dssp             EECSCCCCC-CCC---CCTTCCEEECCSSCCS-------CCCCC-----CTTCCEEECCSSCCSCCCC------------
T ss_pred             ECcCCcCCC-CCC---CCCCcCEEECCCCCCC-------cCCCC-----CCCCCEEECcCCcCCCcCC------------
Confidence            999999995 454   6789999999999997       55553     6899999999999987632            


Q ss_pred             CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049          247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD  326 (517)
Q Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                          .+++|+.|++++|.++ .+|    ..+++|+.|+++++....                            +...+.
T Consensus       159 ----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~----------------------------l~~~~~  201 (622)
T 3g06_A          159 ----LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS----------------------------LPTLPS  201 (622)
T ss_dssp             ----CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC----------------------------CCCCCT
T ss_pred             ----ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC----------------------------CCCccc
Confidence                2568999999999998 577    346788888888733211                            111256


Q ss_pred             hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049          327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  406 (517)
                      +|+.|++++|.++ .+|.   .+++|+.|+|++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+++
T Consensus       202 ~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          202 ELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY  269 (622)
T ss_dssp             TCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             hhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence            7999999999998 4554   34889999999999994 66   45689999999999999 5665   67899999999


Q ss_pred             CCcccccCCCCCcCCccCCCcccCCCCCC
Q 036049          407 DNYLTGLIPQGKQFATFDNTSFDGNSGLC  435 (517)
Q Consensus       407 ~N~l~~~~p~~~~~~~l~~~~~~~Np~~c  435 (517)
                      +|+|+..++....+..+..+++++|++..
T Consensus       270 ~N~L~~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          270 RNQLTRLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             SSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             CCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence            99999554444567788889999998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=8.3e-29  Score=254.41  Aligned_cols=358  Identities=14%  Similarity=0.089  Sum_probs=225.7

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCC---CCchhhhhcccCCcEEEccCCCCcccCCccC-CCC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLKLLDLRSCGFWGKVPHSI-GNF  136 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l  136 (517)
                      .++++|+|+++.++..... ..+..+++|++|++++|.++..   .++..+..+. +|++|++++|.+....+..+ ..+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHH
Confidence            4789999999998754322 1377899999999999998742   1344555556 99999999999965444333 334


Q ss_pred             C----CCcEEEccCCcccc----cccccccCCccccEEEcccccccccCchhhhc-----CCcccccccccccCcceecc
Q 036049          137 T----RLQFLYLGFNNFSG----DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRN-----LTELVVLDMAQNSYGGTMEI  203 (517)
Q Consensus       137 ~----~L~~L~Ls~n~i~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~l~~N~l~~~~~~  203 (517)
                      +    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++..  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--  158 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--  158 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG--
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH--
Confidence            4    79999999999984    56888999999999999999998654544432     568999999999887411  


Q ss_pred             ccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCC-CCCCcccEEEccCCcCCCC----CChhhhhccc
Q 036049          204 EGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTG-CGFSKLRIIDLSDNRFTGK----LPSKSFLCWN  278 (517)
Q Consensus       204 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~~l~  278 (517)
                      ...++..+..  +++|++|++++|.+++......        ...+ ...++|++|++++|.+++.    ++ ..+..++
T Consensus       159 ~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l--------~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~  227 (461)
T 1z7x_W          159 CEPLASVLRA--KPDFKELTVSNNDINEAGVRVL--------CQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASKA  227 (461)
T ss_dssp             HHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHH--------HHHHHHSCCCCCEEECTTSCCBTTHHHHHH-HHHHHCT
T ss_pred             HHHHHHHHhh--CCCCCEEECcCCCcchHHHHHH--------HHHHhcCCCCceEEEccCCCCcHHHHHHHH-HHHHhCC
Confidence            0123444555  8999999999999876422100        0000 1256899999999998743    23 3456778


Q ss_pred             ccceeccCcccccccccCCCcccchhhhccceeeeecCccccC---------CCchhhhhhhhCCCCCCcccCcccccC-
Q 036049          279 AMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAY---------NKIPDILAGIILSNKSFDGAIPASISN-  348 (517)
Q Consensus       279 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~L~~L~Ls~n~l~~~~p~~~~~-  348 (517)
                      +|+.|+++++..-.................+..+.+.+.....         ....+.|++|++++|.+++..+..+.. 
T Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  307 (461)
T 1z7x_W          228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  307 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence            8999998875321100000000000001111122221111100         111355777777777776543333322 


Q ss_pred             ----CCCCCeEeCcCcccccc----CChhccCCCCCCeeeCCCCcccccCcccccc-----CCCCCEEeccCCcccc---
Q 036049          349 ----LKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQQLVE-----LTFLAFFNVSDNYLTG---  412 (517)
Q Consensus       349 ----l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~l~~N~l~~---  412 (517)
                          .++|++|+|++|.+++.    ++..+..+++|++|+|++|++++..+..+..     .++|++|++++|++++   
T Consensus       308 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  387 (461)
T 1z7x_W          308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC  387 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred             hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhH
Confidence                25777777777777644    3455566677777777777776554443432     5677777777777764   


Q ss_pred             -cCCCC-CcCCccCCCcccCCCC
Q 036049          413 -LIPQG-KQFATFDNTSFDGNSG  433 (517)
Q Consensus       413 -~~p~~-~~~~~l~~~~~~~Np~  433 (517)
                       .+|.. ...+++..+++++|+.
T Consensus       388 ~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          388 SSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSSC
T ss_pred             HHHHHHHHhCCCccEEECCCCCC
Confidence             33332 2355666677777754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=4.4e-25  Score=210.60  Aligned_cols=228  Identities=20%  Similarity=0.195  Sum_probs=151.5

Q ss_pred             EEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccc
Q 036049           91 WLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSK  170 (517)
Q Consensus        91 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~  170 (517)
                      ..+.++..+..  +|..+.   ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        11 ~~~c~~~~l~~--ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFYK--IPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCSS--CCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCccc--cCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence            44555556654  565442   3788888888888666666788888888888888888866666788888888888888


Q ss_pred             ccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCC
Q 036049          171 CNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTG  249 (517)
Q Consensus       171 n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~  249 (517)
                      |.+++..+..|.++++|++|++++|.+.       .++. .+..  +++|++|++++|.+++..           .+..+
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~--l~~L~~L~l~~n~l~~~~-----------l~~~~  145 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLA-------SLENFPIGH--LKTLKELNVAHNLIQSFK-----------LPEYF  145 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCC-------CSTTCCCTT--CTTCCEEECCSSCCCCCC-----------CCGGG
T ss_pred             CccCccChhhhcCCccccEEECCCCCcc-------ccCchhccc--CCCCCEEECcCCccceec-----------Cchhh
Confidence            8887766677777777777777777665       2222 2333  566666666666665431           01123


Q ss_pred             CCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhh
Q 036049          250 CGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILA  329 (517)
Q Consensus       250 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  329 (517)
                      ..+++|++|++++|+++ .++                                                           
T Consensus       146 ~~l~~L~~L~Ls~N~l~-~~~-----------------------------------------------------------  165 (276)
T 2z62_A          146 SNLTNLEHLDLSSNKIQ-SIY-----------------------------------------------------------  165 (276)
T ss_dssp             GGCTTCCEEECCSSCCC-EEC-----------------------------------------------------------
T ss_pred             ccCCCCCEEECCCCCCC-cCC-----------------------------------------------------------
Confidence            45556666666666555 222                                                           


Q ss_pred             hhhCCCCCCcccCcccccCCCCCC----eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049          330 GIILSNKSFDGAIPASISNLKGLQ----VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV  405 (517)
Q Consensus       330 ~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  405 (517)
                                   +..+..+++|+    .|++++|.+++..+..+. ..+|++|+|++|++++..+..|..+++|+.|++
T Consensus       166 -------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          166 -------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             -------------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred             -------------HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence                         22233333333    788888888855554443 447888888888888666666778888888888


Q ss_pred             cCCcccccCCCC
Q 036049          406 SDNYLTGLIPQG  417 (517)
Q Consensus       406 ~~N~l~~~~p~~  417 (517)
                      ++|++++..|..
T Consensus       232 ~~N~~~c~c~~l  243 (276)
T 2z62_A          232 HTNPWDCSCPRI  243 (276)
T ss_dssp             CSSCBCCCTTTT
T ss_pred             cCCcccccCCch
Confidence            888888777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=6.9e-25  Score=210.42  Aligned_cols=69  Identities=28%  Similarity=0.311  Sum_probs=48.5

Q ss_pred             ccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049          344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       344 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                      ..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.+++++|++.+.
T Consensus       142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            34556677777777777777555555677777777777777777 5666666677777777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=6e-25  Score=209.66  Aligned_cols=135  Identities=22%  Similarity=0.333  Sum_probs=64.8

Q ss_pred             CCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049           88 HLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI  166 (517)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L  166 (517)
                      +|++|++++|.++.  +++ .+..+. +|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|
T Consensus        29 ~l~~L~ls~n~l~~--~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNLDLSFNPLRH--LGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEEECTTCCCCE--ECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccEEECCCCcccc--cCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            45555555555544  222 233333 55555555555544444445555555555555555554444445555555555


Q ss_pred             EcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCccccc
Q 036049          167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF  232 (517)
Q Consensus       167 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  232 (517)
                      ++++|.+.+..+..+..+++|++|++++|.+++.     .+|..+..  +++|++|++++|++++.
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~l~~~~~~--l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSN--LTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----CCCGGGGG--CTTCCEEECCSSCCCEE
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCcccee-----cCchhhcc--CCCCCEEECCCCCCCcC
Confidence            5555555544333455555555555555544410     13334443  45555555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=7.4e-25  Score=208.30  Aligned_cols=213  Identities=20%  Similarity=0.279  Sum_probs=178.9

Q ss_pred             CCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCC
Q 036049           46 VDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCG  124 (517)
Q Consensus        46 ~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~  124 (517)
                      .++|.|.|+.|.-. ..++.++++++.++. +|.  .+.  ++|++|+|++|.++.  +++ .+..+. +|++|++++|.
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~--~~~~~~~~l~-~L~~L~l~~n~   72 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSS--LPSKAFHRLT-KLRLLYLNDNK   72 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSC--CCTTSSSSCT-TCCEEECCSSC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCe--eCHHHhcCCC-CCCEEECCCCc
Confidence            47899999998532 356789999999985 443  332  689999999999987  555 455565 99999999999


Q ss_pred             CcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccc
Q 036049          125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIE  204 (517)
Q Consensus       125 l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~  204 (517)
                      +....+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++      
T Consensus        73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------  146 (270)
T 2o6q_A           73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------  146 (270)
T ss_dssp             CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------
T ss_pred             cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC------
Confidence            97666666799999999999999999777778899999999999999999888888999999999999999987      


Q ss_pred             cccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhccccccee
Q 036049          205 GKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV  283 (517)
Q Consensus       205 ~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L  283 (517)
                       .++.. +..  +++|++|++++|.++++++.            .+..+++|++|++++|+++ .+|...+..+++|+.+
T Consensus       147 -~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          147 -SLPKGVFDK--LTSLKELRLYNNQLKRVPEG------------AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML  210 (270)
T ss_dssp             -CCCTTTTTT--CTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEE
T ss_pred             -ccCHhHccC--CcccceeEecCCcCcEeChh------------HhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEE
Confidence             45544 444  89999999999999987544            3577899999999999998 6777778889999999


Q ss_pred             ccCccc
Q 036049          284 NASELR  289 (517)
Q Consensus       284 ~l~~~~  289 (517)
                      +++++.
T Consensus       211 ~l~~N~  216 (270)
T 2o6q_A          211 QLQENP  216 (270)
T ss_dssp             ECCSSC
T ss_pred             EecCCC
Confidence            988743

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.2e-23  Score=199.84  Aligned_cols=70  Identities=24%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049          346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  415 (517)
                      |..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            4556777777777777776555667777778888888887776555567777778888888877776554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.9e-23  Score=200.39  Aligned_cols=203  Identities=22%  Similarity=0.227  Sum_probs=125.1

Q ss_pred             ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049           82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR  161 (517)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~  161 (517)
                      .+.+++++++++++++.++.  +|..+.   +++++|++++|.+.+..+..|.++++|++|+|++|.+++. +. .+.++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCT
T ss_pred             cccccCCccEEECCCCCCCc--CCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCC
Confidence            35566777777777777765  565443   2677777777777666666677777777777777777643 22 25666


Q ss_pred             cccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccc-cccccccCCCCCeEeccCCcccccCCCCCCCC
Q 036049          162 SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVH-KWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP  240 (517)
Q Consensus       162 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~  240 (517)
                      +|++|++++|.++ .+|..+..+++|++|++++|+++       .++ ..+..  +++|++|++++|+++++++.     
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-------~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~-----  142 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-------SLPLGALRG--LGELQELYLKGNELKTLPPG-----  142 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-------CCCSSTTTT--CTTCCEEECTTSCCCCCCTT-----
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-------ccCHHHHcC--CCCCCEEECCCCCCCccChh-----
Confidence            6777777777666 45555555666666666666554       222 22333  55555555555555544322     


Q ss_pred             CCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCcccc
Q 036049          241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMA  320 (517)
Q Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (517)
                             .+..+++|+.|++++|+++ .+|                                                  
T Consensus       143 -------~~~~l~~L~~L~L~~N~l~-~l~--------------------------------------------------  164 (290)
T 1p9a_G          143 -------LLTPTPKLEKLSLANNNLT-ELP--------------------------------------------------  164 (290)
T ss_dssp             -------TTTTCTTCCEEECTTSCCS-CCC--------------------------------------------------
T ss_pred             -------hcccccCCCEEECCCCcCC-ccC--------------------------------------------------
Confidence                   2234455555555555554 222                                                  


Q ss_pred             CCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049          321 YNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS  387 (517)
Q Consensus       321 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  387 (517)
                                            +..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus       165 ----------------------~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          165 ----------------------AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ----------------------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ----------------------HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence                                  233556777888888888887 66777777778888888888775

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.2e-23  Score=200.17  Aligned_cols=220  Identities=20%  Similarity=0.264  Sum_probs=143.9

Q ss_pred             CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEc
Q 036049           89 LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYM  168 (517)
Q Consensus        89 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L  168 (517)
                      +..+++..+.+...   .....+. +|+.|++++|.+. .++ .+..+++|++|++++|.+++ + ..+..+++|++|++
T Consensus        21 l~~l~l~~~~~~~~---~~~~~l~-~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           21 TIKANLKKKSVTDA---VTQNELN-SIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHTCSCTTSE---ECHHHHT-TCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred             HHHHHhcCcccccc---ccccccc-ceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence            33444555544431   2233444 6666666666653 222 35666666666666666664 2 35666666666666


Q ss_pred             ccccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCC
Q 036049          169 SKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR  247 (517)
Q Consensus       169 ~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~  247 (517)
                      ++|.+++..+..|.++++|++|++++|.++       .++. .+..  +++|++|++++|.+++.++.            
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~------------  151 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------SLPDGVFDK--LTNLTYLNLAHNQLQSLPKG------------  151 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------CCCTTTTTT--CTTCCEEECCSSCCCCCCTT------------
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCC-------ccCHHHhcc--CCCCCEEECCCCccCccCHH------------
Confidence            666666555555666666777777766665       2222 2333  67777778877777765443            


Q ss_pred             CCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhh
Q 036049          248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI  327 (517)
Q Consensus       248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                      .+..+++|++|++++|+++ .+|.                                                        
T Consensus       152 ~~~~l~~L~~L~l~~n~l~-~~~~--------------------------------------------------------  174 (272)
T 3rfs_A          152 VFDKLTNLTELDLSYNQLQ-SLPE--------------------------------------------------------  174 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCT--------------------------------------------------------
T ss_pred             HhccCccCCEEECCCCCcC-ccCH--------------------------------------------------------
Confidence            2467788888888888887 3332                                                        


Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD  407 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  407 (517)
                                      ..+..+++|+.|++++|++++..+..+..+++|++|+|++|.+.+.       ++.|+.++++.
T Consensus       175 ----------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~  231 (272)
T 3rfs_A          175 ----------------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI  231 (272)
T ss_dssp             ----------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred             ----------------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence                            2345667888888888888877777778888888888888877643       45688888888


Q ss_pred             CcccccCCCC
Q 036049          408 NYLTGLIPQG  417 (517)
Q Consensus       408 N~l~~~~p~~  417 (517)
                      |.++|.+|..
T Consensus       232 n~~~g~ip~~  241 (272)
T 3rfs_A          232 NKHSGVVRNS  241 (272)
T ss_dssp             HHTGGGBBCT
T ss_pred             HhCCCcccCc
Confidence            8888888864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.7e-23  Score=197.62  Aligned_cols=157  Identities=21%  Similarity=0.287  Sum_probs=77.8

Q ss_pred             cccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCcc
Q 036049           83 LYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRS  162 (517)
Q Consensus        83 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~  162 (517)
                      +..+++|+.|++++|.++.  ++ .+..+. +|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..|..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--~~-~l~~l~-~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS--VQ-GIQYLP-NVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC--CT-TGGGCT-TCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccceeeeeeCCCCccc--cc-ccccCC-CCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            3444555555555555543  22 233333 55555555555533 1 24555555555555555555444444555555


Q ss_pred             ccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEeccCCcccccCCCCCCCCC
Q 036049          163 LEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPG  241 (517)
Q Consensus       163 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~  241 (517)
                      |++|++++|.+++..+..|..+++|++|++++|.++       .++.. +..  +++|++|++++|++++.++.      
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~------  175 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------SLPKGVFDK--LTNLTELDLSYNQLQSLPEG------  175 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTT--CTTCCEEECCSSCCCCCCTT------
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-------ccCHHHhcc--CccCCEEECCCCCcCccCHH------
Confidence            555555555555444444555555555555555554       22222 222  55555555555555544322      


Q ss_pred             CCCCCCCCCCCCcccEEEccCCcCC
Q 036049          242 NNEEPRTGCGFSKLRIIDLSDNRFT  266 (517)
Q Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (517)
                            .+..+++|++|++++|+++
T Consensus       176 ------~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          176 ------VFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ------TTTTCTTCCEEECCSSCCS
T ss_pred             ------HhcCCccCCEEECCCCcCC
Confidence                  2344555555555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.5e-25  Score=220.13  Aligned_cols=265  Identities=17%  Similarity=0.181  Sum_probs=158.1

Q ss_pred             CCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccC--CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC
Q 036049           47 DCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKL--VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG  124 (517)
Q Consensus        47 ~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~  124 (517)
                      -|..|.++.|+.  ..+++++++++.+..   .  .+..+  ++++.|++++|.+.+  .++.++.+. +|++|++++|.
T Consensus        35 vc~~W~~~~~~~--~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~--~~~~~~~~~-~L~~L~L~~~~  104 (336)
T 2ast_B           35 VCKRWYRLASDE--SLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQ--PLAEHFSPF-RVQHMDLSNSV  104 (336)
T ss_dssp             SCHHHHHHHTCS--TTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECS--CCCSCCCCB-CCCEEECTTCE
T ss_pred             HHHHHHHHhcCc--hhheeeccccccCCH---H--HHHhhhhccceEEEcCCccccc--cchhhccCC-CCCEEEccCCC
Confidence            455799888753  357788888877652   2  44555  677777777777765  333345554 77777777776


Q ss_pred             Cccc-CCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccc-cccc-cCchhhhcCCcccccccccc-cCcce
Q 036049          125 FWGK-VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC-NFSG-QITSSLRNLTELVVLDMAQN-SYGGT  200 (517)
Q Consensus       125 l~~~-~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~l~~N-~l~~~  200 (517)
                      +.+. +|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++.
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  184 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK  184 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence            6544 5556666777777777777766666666666777777777776 4553 24455666666666666666 55421


Q ss_pred             eccccccccccccccCC-CCCeEeccCCc--ccc--cCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhh
Q 036049          201 MEIEGKVHKWLLDPNMQ-NLNALNLSHNL--LTG--FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL  275 (517)
Q Consensus       201 ~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~--l~~--~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  275 (517)
                           .++..+..  ++ +|++|++++|.  ++.  ++.             .+..+++|++|++++|.+          
T Consensus       185 -----~~~~~~~~--l~~~L~~L~l~~~~~~~~~~~l~~-------------~~~~~~~L~~L~l~~~~~----------  234 (336)
T 2ast_B          185 -----HVQVAVAH--VSETITQLNLSGYRKNLQKSDLST-------------LVRRCPNLVHLDLSDSVM----------  234 (336)
T ss_dssp             -----HHHHHHHH--SCTTCCEEECCSCGGGSCHHHHHH-------------HHHHCTTCSEEECTTCTT----------
T ss_pred             -----HHHHHHHh--cccCCCEEEeCCCcccCCHHHHHH-------------HHhhCCCCCEEeCCCCCc----------
Confidence                 13333333  55 55555555552  221  100             112334444444444441          


Q ss_pred             cccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeE
Q 036049          276 CWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVL  355 (517)
Q Consensus       276 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  355 (517)
                                                                                    +++..+..+..+++|++|
T Consensus       235 --------------------------------------------------------------l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          235 --------------------------------------------------------------LKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             --------------------------------------------------------------CCGGGGGGGGGCTTCCEE
T ss_pred             --------------------------------------------------------------CCHHHHHHHhCCCCCCEe
Confidence                                                                          333444456677888888


Q ss_pred             eCcCcc-ccccCChhccCCCCCCeeeCCCCcccccCccccccC-CCCCEEeccCCcccccCCCC
Q 036049          356 NLHNNN-LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVEL-TFLAFFNVSDNYLTGLIPQG  417 (517)
Q Consensus       356 ~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p~~  417 (517)
                      ++++|. +.......+..+++|++|++++| +...   .+..+ ..+..|++++|++++..|..
T Consensus       253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence            888884 33222235777888888888888 4432   23333 23666668888888887753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=7.1e-24  Score=205.75  Aligned_cols=235  Identities=19%  Similarity=0.183  Sum_probs=146.7

Q ss_pred             CCCCCEEEcCCCCCCCCCCch--hhhhcccCCcEEEccCCCCcccCCccC--CCCCCCcEEEccCCccccccc----ccc
Q 036049           86 LVHLEWLNLALNDFNSSEIQP--EIINLSCSLKLLDLRSCGFWGKVPHSI--GNFTRLQFLYLGFNNFSGDLL----GSI  157 (517)
Q Consensus        86 l~~L~~L~Ls~n~l~~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~i~~~~p----~~~  157 (517)
                      ...++.+.+.++.++...+..  ...... +|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            335677888777764321111  122233 68888888888877788777  788888888888888876444    344


Q ss_pred             cCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCC
Q 036049          158 GNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV  237 (517)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  237 (517)
                      ..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..    .++.......+++|++|++++|+++..+... 
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-  216 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER----GLMAALCPHKFPAIQNLALRNTGMETPTGVC-  216 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH----HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch----hhhHHHhhhcCCCCCEEECCCCCCCchHHHH-
Confidence            56778888888888887777777777777777777777765211    0111111011556666666666554322100 


Q ss_pred             CCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCc
Q 036049          238 LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGR  317 (517)
Q Consensus       238 ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (517)
                              ...+..+++|++|++++|+++                                                   
T Consensus       217 --------~~l~~~l~~L~~L~Ls~N~l~---------------------------------------------------  237 (310)
T 4glp_A          217 --------AALAAAGVQPHSLDLSHNSLR---------------------------------------------------  237 (310)
T ss_dssp             --------HHHHHHTCCCSSEECTTSCCC---------------------------------------------------
T ss_pred             --------HHHHhcCCCCCEEECCCCCCC---------------------------------------------------
Confidence                    000123345555555555554                                                   


Q ss_pred             cccCCCchhhhhhhhCCCCCCcccCcccccCC---CCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc
Q 036049          318 MMAYNKIPDILAGIILSNKSFDGAIPASISNL---KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL  394 (517)
Q Consensus       318 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  394 (517)
                                            +..|..+..+   ++|++|+|++|+++ .+|..+.  ++|++|+|++|+|++. |. +
T Consensus       238 ----------------------~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~  290 (310)
T 4glp_A          238 ----------------------ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-P  290 (310)
T ss_dssp             ----------------------CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-T
T ss_pred             ----------------------ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-h
Confidence                                  3333333333   67888888888888 6666654  6888888888888843 33 5


Q ss_pred             ccCCCCCEEeccCCcccc
Q 036049          395 VELTFLAFFNVSDNYLTG  412 (517)
Q Consensus       395 ~~l~~L~~L~l~~N~l~~  412 (517)
                      ..+++|+.|++++|+++.
T Consensus       291 ~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          291 DELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TSCCCCSCEECSSTTTSC
T ss_pred             hhCCCccEEECcCCCCCC
Confidence            677888888888888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=6.6e-23  Score=192.58  Aligned_cols=191  Identities=21%  Similarity=0.263  Sum_probs=161.8

Q ss_pred             CCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCc
Q 036049           47 DCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFW  126 (517)
Q Consensus        47 ~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~  126 (517)
                      +||.|.|..|..   ..++++++++.++.. |.  .+.  +++++|+|++|.+++. .+..+..+. +|++|+|++|.+.
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~-p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~   72 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLDSV-PS--GIP--ADTEKLDLQSTGLATL-SDATFRGLT-KLTWLNLDYNQLQ   72 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCSSC-CS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCT-TCCEEECTTSCCC
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcccc-CC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcc-cCCEEECCCCcCC
Confidence            688999999953   456799999999744 43  333  6899999999999884 344556666 9999999999998


Q ss_pred             ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccc
Q 036049          127 GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGK  206 (517)
Q Consensus       127 ~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~  206 (517)
                      +..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.++       .
T Consensus        73 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~  145 (251)
T 3m19_A           73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------S  145 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------C
T ss_pred             ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-------c
Confidence            888888999999999999999999887888999999999999999999777777899999999999999998       4


Q ss_pred             ccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCC
Q 036049          207 VHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGK  268 (517)
Q Consensus       207 ~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  268 (517)
                      ++. .+..  +++|++|++++|+++++++.            .+..+++|++|++++|.+.+.
T Consensus       146 ~~~~~~~~--l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          146 IPAGAFDK--LTNLQTLSLSTNQLQSVPHG------------AFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTT--CTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHcCc--CcCCCEEECCCCcCCccCHH------------HHhCCCCCCEEEeeCCceeCC
Confidence            444 4555  89999999999999987653            357889999999999999865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=3.4e-23  Score=193.11  Aligned_cols=134  Identities=18%  Similarity=0.220  Sum_probs=78.2

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCc-ccccccccccCCccccEEEccc-ccccccCchhhhcCCcccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN-FSGDLLGSIGNLRSLEAIYMSK-CNFSGQITSSLRNLTELVVLD  191 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  191 (517)
                      +|++|++++|.+.+..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55566666666544444456666666666666664 5544444566666666666666 666655455566666666666


Q ss_pred             cccccCcceeccccccccccccccCCCCC---eEeccCC-cccccCCCCCCCCCCCCCCCCCCCCCccc-EEEccCCcCC
Q 036049          192 MAQNSYGGTMEIEGKVHKWLLDPNMQNLN---ALNLSHN-LLTGFDQHLVLLPGNNEEPRTGCGFSKLR-IIDLSDNRFT  266 (517)
Q Consensus       192 l~~N~l~~~~~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~ll~~~~~~~~~~~~l~~L~-~L~Ls~N~l~  266 (517)
                      +++|.++       .+|. +..  +++|+   +|++++| .++++++.            .+..+++|+ +|++++|+++
T Consensus       112 l~~n~l~-------~lp~-~~~--l~~L~~L~~L~l~~N~~l~~i~~~------------~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          112 IFNTGLK-------MFPD-LTK--VYSTDIFFILEITDNPYMTSIPVN------------AFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEECCC-------SCCC-CTT--CCBCCSEEEEEEESCTTCCEECTT------------TTTTTBSSEEEEECCSCCCC
T ss_pred             CCCCCCc-------cccc-ccc--ccccccccEEECCCCcchhhcCcc------------cccchhcceeEEEcCCCCCc
Confidence            6666555       2333 222  44554   6666666 66655433            245566777 7777777765


Q ss_pred             CCCC
Q 036049          267 GKLP  270 (517)
Q Consensus       267 ~~~p  270 (517)
                       .+|
T Consensus       170 -~i~  172 (239)
T 2xwt_C          170 -SVQ  172 (239)
T ss_dssp             -EEC
T ss_pred             -ccC
Confidence             444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=8.4e-25  Score=217.08  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=36.3

Q ss_pred             CCCCeEeCcCccccccCC----hhccCCCCCCeeeCCCCccccc-------CccccccCCCCCEEeccCCccccc
Q 036049          350 KGLQVLNLHNNNLQGHIP----SCLGNLTNLESLDLSNNKFSGR-------IPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       350 ~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                      ++|++|+|++|.+++..+    ..+..+++|++|+|++|.+.+.       ++..+..+++|+.|++++|++...
T Consensus       225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            366666666666654333    2234556666666666663322       223455566666677777766544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.4e-23  Score=201.99  Aligned_cols=191  Identities=15%  Similarity=0.086  Sum_probs=141.0

Q ss_pred             cEEEEEcCCCCceeee-CCCcccccCCCCCEEEcCCCCCCCCCCchhh--hhcccCCcEEEccCCCCcccCC----ccCC
Q 036049           62 HVVKLNLSHSCLFGSI-NSSSSLYKLVHLEWLNLALNDFNSSEIQPEI--INLSCSLKLLDLRSCGFWGKVP----HSIG  134 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~p----~~~~  134 (517)
                      +++.+.+.++.+.... .....+..+++|++|++++|.+.+. .|..+  ..+. +|++|++++|.+.+..+    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhh
Confidence            4678888887765321 0000233457799999999999875 66665  5555 99999999999976555    3456


Q ss_pred             CCCCCcEEEccCCcccccccccccCCccccEEEccccccccc--C--chhhhcCCcccccccccccCcceeccccccccc
Q 036049          135 NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQ--I--TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW  210 (517)
Q Consensus       135 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  210 (517)
                      .+++|++|+|++|.+.+..+..|+.+++|++|+|++|++.+.  +  +..+..+++|++|++++|+++...    ..+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~  218 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT----GVCAA  218 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----HHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----HHHHH
Confidence            799999999999999988889999999999999999998642  2  233478999999999999996211    11112


Q ss_pred             -cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCC
Q 036049          211 -LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP  270 (517)
Q Consensus       211 -~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  270 (517)
                       +..  +++|++|++++|.+++..|..         ...+..+++|++|++++|+++ .+|
T Consensus       219 l~~~--l~~L~~L~Ls~N~l~~~~p~~---------~~~~~~~~~L~~L~Ls~N~l~-~lp  267 (310)
T 4glp_A          219 LAAA--GVQPHSLDLSHNSLRATVNPS---------APRCMWSSALNSLNLSFAGLE-QVP  267 (310)
T ss_dssp             HHHH--TCCCSSEECTTSCCCCCCCSC---------CSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred             HHhc--CCCCCEEECCCCCCCccchhh---------HHhccCcCcCCEEECCCCCCC-chh
Confidence             233  899999999999999874321         011223478999999999887 555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=3.4e-22  Score=193.46  Aligned_cols=39  Identities=31%  Similarity=0.461  Sum_probs=19.8

Q ss_pred             cCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049          347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS  387 (517)
Q Consensus       347 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  387 (517)
                      ..+++|++|+|++|++++..+  +..+++|+.|+|++|+++
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            344555555555555553221  455555555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=5e-24  Score=213.52  Aligned_cols=88  Identities=17%  Similarity=0.273  Sum_probs=62.8

Q ss_pred             hhhhhCCCCCCc----ccCcccccCCCCCCeEeCcCcccccc----CChhccC--CCCCCeeeCCCCcccc----cCccc
Q 036049          328 LAGIILSNKSFD----GAIPASISNLKGLQVLNLHNNNLQGH----IPSCLGN--LTNLESLDLSNNKFSG----RIPQQ  393 (517)
Q Consensus       328 L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~  393 (517)
                      |+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    ++..+..  +++|++|+|++|.+++    .+|..
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            334444444443    34556677788888888888888755    4566633  8888999999998886    37766


Q ss_pred             c-ccCCCCCEEeccCCcccccCC
Q 036049          394 L-VELTFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       394 l-~~l~~L~~L~l~~N~l~~~~p  415 (517)
                      + .++++|++|++++|++++..|
T Consensus       298 l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          298 IDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHhcCCCceEEEccCCcCCcchh
Confidence            6 567889999999998887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.1e-24  Score=214.26  Aligned_cols=270  Identities=17%  Similarity=0.164  Sum_probs=179.6

Q ss_pred             EEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCc----hhhhhcccCCcEEEccCCCCcccCCccCCCC-----
Q 036049           66 LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQ----PEIINLSCSLKLLDLRSCGFWGKVPHSIGNF-----  136 (517)
Q Consensus        66 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-----  136 (517)
                      +++++|.+++.++.  .+...++|++|+|++|.++.. .+    ..+..+..+|++|+|++|.+.+..+..|..+     
T Consensus         3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccchHHHHH--HHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            57788888877765  555566699999999988763 22    2333333378899999998876666666654     


Q ss_pred             CCCcEEEccCCccccccccccc----CC-ccccEEEcccccccccCchhhhc-----CCcccccccccccCcceeccccc
Q 036049          137 TRLQFLYLGFNNFSGDLLGSIG----NL-RSLEAIYMSKCNFSGQITSSLRN-----LTELVVLDMAQNSYGGTMEIEGK  206 (517)
Q Consensus       137 ~~L~~L~Ls~n~i~~~~p~~~~----~l-~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~l~~N~l~~~~~~~~~  206 (517)
                      ++|++|+|++|.+++..+..+.    .+ ++|++|++++|.+++..+..+..     .++|++|++++|.+++..  ...
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~  157 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--SDE  157 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--HHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--HHH
Confidence            8889999999988876666443    34 78899999999888666655443     358888888888876311  012


Q ss_pred             cccccccccCC-CCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCC-CcccEEEccCCcCCCCCChhhhhcccccceec
Q 036049          207 VHKWLLDPNMQ-NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGF-SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVN  284 (517)
Q Consensus       207 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  284 (517)
                      ++..+..  ++ +|++|++++|.+++..+..        ....+..+ ++|++|+|++|.+++.........        
T Consensus       158 l~~~l~~--~~~~L~~L~Ls~n~l~~~~~~~--------l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~--------  219 (362)
T 3goz_A          158 LIQILAA--IPANVNSLNLRGNNLASKNCAE--------LAKFLASIPASVTSLDLSANLLGLKSYAELAYI--------  219 (362)
T ss_dssp             HHHHHHT--SCTTCCEEECTTSCGGGSCHHH--------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH--------
T ss_pred             HHHHHhc--CCccccEeeecCCCCchhhHHH--------HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH--------
Confidence            3333333  44 8888888888887653210        00011234 488888888888873211110000        


Q ss_pred             cCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCc----ccccCCCCCCeEeCcCc
Q 036049          285 ASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIP----ASISNLKGLQVLNLHNN  360 (517)
Q Consensus       285 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N  360 (517)
                                                          +....+.|+.|++++|.+++..+    ..+..+++|+.|+|++|
T Consensus       220 ------------------------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          220 ------------------------------------FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             ------------------------------------HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             ------------------------------------HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence                                                00012467788888888876543    34567899999999999


Q ss_pred             ccccc-------CChhccCCCCCCeeeCCCCcccccCcccc
Q 036049          361 NLQGH-------IPSCLGNLTNLESLDLSNNKFSGRIPQQL  394 (517)
Q Consensus       361 ~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  394 (517)
                      .+.+.       ++..+..+++|+.||+++|++....+..+
T Consensus       264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            95533       33457788999999999999987644433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=1.3e-22  Score=189.13  Aligned_cols=196  Identities=18%  Similarity=0.257  Sum_probs=165.5

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC-CCCCCCchh-hhhcccCCcEEEccC-CCCcccCCccCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND-FNSSEIQPE-IINLSCSLKLLDLRS-CGFWGKVPHSIGNF  136 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~l  136 (517)
                      ..+++.|++++|.+++..+.  .|.++++|++|++++|. ++.  +++. +..+. +|++|++++ |.+.+..+..|.++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~--i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQ--LESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCE--ECTTTEESCT-TCCEEEEEEETTCCEECTTSEECC
T ss_pred             CCcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCcce--eCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCC
Confidence            35799999999999987776  89999999999999997 876  6654 44555 999999999 99977777889999


Q ss_pred             CCCcEEEccCCcccccccccccCCcccc---EEEcccc-cccccCchhhhcCCccc-ccccccccCcceecccccccccc
Q 036049          137 TRLQFLYLGFNNFSGDLLGSIGNLRSLE---AIYMSKC-NFSGQITSSLRNLTELV-VLDMAQNSYGGTMEIEGKVHKWL  211 (517)
Q Consensus       137 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~  211 (517)
                      ++|++|++++|.+++ +|. |..+++|+   +|++++| .+++..+..|.++++|+ +|++++|.++       .+|...
T Consensus       105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-------~i~~~~  175 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-------SVQGYA  175 (239)
T ss_dssp             TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-------EECTTT
T ss_pred             CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-------ccCHhh
Confidence            999999999999995 666 88888888   9999999 99977777899999999 9999999997       677766


Q ss_pred             ccccCCCCCeEeccCCc-ccccCCCCCCCCCCCCCCCCCCCC-CcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049          212 LDPNMQNLNALNLSHNL-LTGFDQHLVLLPGNNEEPRTGCGF-SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE  287 (517)
Q Consensus       212 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~ll~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~  287 (517)
                      +.  .++|++|++++|+ ++++++.            .+..+ ++|+.|++++|+++ .+|..   .+.+|+.|.+++
T Consensus       176 ~~--~~~L~~L~L~~n~~l~~i~~~------------~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~  235 (239)
T 2xwt_C          176 FN--GTKLDAVYLNKNKYLTVIDKD------------AFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARN  235 (239)
T ss_dssp             TT--TCEEEEEECTTCTTCCEECTT------------TTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTT
T ss_pred             cC--CCCCCEEEcCCCCCcccCCHH------------HhhccccCCcEEECCCCccc-cCChh---HhccCceeeccC
Confidence            66  5789999999995 9887544            35778 89999999999998 67755   456666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=4.9e-22  Score=192.36  Aligned_cols=62  Identities=27%  Similarity=0.401  Sum_probs=36.6

Q ss_pred             cCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccc
Q 036049          347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG  412 (517)
Q Consensus       347 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  412 (517)
                      ..+++|+.|++++|++++..+  +..+++|++|+|++|++++..  .+..+++|+.|++++|++++
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            344566666666666653322  556666666666666666433  25666666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=7.7e-22  Score=185.27  Aligned_cols=212  Identities=21%  Similarity=0.230  Sum_probs=125.6

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      ..++++++++.+ ..+|..+.  ++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l-~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSL-DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCC-SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCc-cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            566777777777 45565554  567777777777776666667777777777777777766555555555555555555


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS  273 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  273 (517)
                      +|.++                                ++++.            .+..+++|++|++++|+++ .+|.  
T Consensus        92 ~n~l~--------------------------------~~~~~------------~~~~l~~L~~L~L~~N~l~-~~~~--  124 (251)
T 3m19_A           92 NNQLA--------------------------------SLPLG------------VFDHLTQLDKLYLGGNQLK-SLPS--  124 (251)
T ss_dssp             TSCCC--------------------------------CCCTT------------TTTTCTTCCEEECCSSCCC-CCCT--
T ss_pred             CCccc--------------------------------ccChh------------HhcccCCCCEEEcCCCcCC-CcCh--
Confidence            55443                                32211            1244556666666666665 2221  


Q ss_pred             hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049          274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ  353 (517)
Q Consensus       274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  353 (517)
                                                                                            ..|..+++|+
T Consensus       125 ----------------------------------------------------------------------~~~~~l~~L~  134 (251)
T 3m19_A          125 ----------------------------------------------------------------------GVFDRLTKLK  134 (251)
T ss_dssp             ----------------------------------------------------------------------TTTTTCTTCC
T ss_pred             ----------------------------------------------------------------------hHhccCCccc
Confidence                                                                                  1234556677


Q ss_pred             eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCcc------CCCc
Q 036049          354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATF------DNTS  427 (517)
Q Consensus       354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l------~~~~  427 (517)
                      .|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++...+...+..+      ...+
T Consensus       135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~  214 (251)
T 3m19_A          135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKD  214 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC
T ss_pred             EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceee
Confidence            7777777777555556777777777777777777666666777777777888777777664432211111      1122


Q ss_pred             ccCCCCCCCCCCCCCCCCC
Q 036049          428 FDGNSGLCGKPLSKGCESG  446 (517)
Q Consensus       428 ~~~Np~~c~~~~~~~c~~~  446 (517)
                      ..|+. .|+.+....|..+
T Consensus       215 ~~~~~-~~~~~~~~~C~~~  232 (251)
T 3m19_A          215 GTGQN-LHESPDGVTCSDG  232 (251)
T ss_dssp             --------CCGGGCBBTTS
T ss_pred             ccCcc-cccCCCcCccCCC
Confidence            33443 5666666677765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=5.8e-22  Score=195.58  Aligned_cols=106  Identities=15%  Similarity=0.099  Sum_probs=51.3

Q ss_pred             CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCC-ccCCCCCCCcE-EEccCCcccccccccccCCcccc
Q 036049           87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVP-HSIGNFTRLQF-LYLGFNNFSGDLLGSIGNLRSLE  164 (517)
Q Consensus        87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~n~i~~~~p~~~~~l~~L~  164 (517)
                      +++++|+|++|+|+.  +|+..+...++|++|+|++|.+.+.+| ..|.++++|++ +.+++|+++...|..|..+++|+
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            345555555555544  444332222255555555555544333 23455555443 34444555544455555555555


Q ss_pred             EEEcccccccccCchhhhcCCccccccccc
Q 036049          165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQ  194 (517)
Q Consensus       165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  194 (517)
                      +|++++|.+....+..+....++..|++.+
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~  137 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQD  137 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred             cccccccccccCCchhhcccchhhhhhhcc
Confidence            555555555544444444444455555533

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=5.1e-21  Score=188.83  Aligned_cols=240  Identities=13%  Similarity=0.102  Sum_probs=165.4

Q ss_pred             EEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccccccc-ccccCCccccE-EEc
Q 036049           91 WLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL-GSIGNLRSLEA-IYM  168 (517)
Q Consensus        91 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~-L~L  168 (517)
                      +++.++++++.  +|..+.   +++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| .+|.++++|++ +.+
T Consensus        13 ~v~C~~~~Lt~--iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           13 VFLCQESKVTE--IPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEEEESTTCCS--CCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             EEEecCCCCCc--cCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            34444555554  565542   389999999999976556689999999999999999876555 56889988775 667


Q ss_pred             ccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccC-CcccccCCCCCCCCCCCCCCC
Q 036049          169 SKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSH-NLLTGFDQHLVLLPGNNEEPR  247 (517)
Q Consensus       169 ~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~ll~~~~~~~~  247 (517)
                      +.|+++...|..|..+++|++|++++|++.       .++...+. ...++..|++.+ +.+..++..            
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-------~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~------------  147 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-------HLPDVHKI-HSLQKVLLDIQDNINIHTIERN------------  147 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-------SCCCCTTC-CBSSCEEEEEESCTTCCEECTT------------
T ss_pred             cCCcccccCchhhhhccccccccccccccc-------cCCchhhc-ccchhhhhhhcccccccccccc------------
Confidence            789999888899999999999999999997       44433221 156677888865 567766443            


Q ss_pred             CCCCC-CcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049          248 TGCGF-SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD  326 (517)
Q Consensus       248 ~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (517)
                      .+..+ ..++.|++++|+++ .+|...|..                                                 .
T Consensus       148 ~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~-------------------------------------------------~  177 (350)
T 4ay9_X          148 SFVGLSFESVILWLNKNGIQ-EIHNSAFNG-------------------------------------------------T  177 (350)
T ss_dssp             SSTTSBSSCEEEECCSSCCC-EECTTSSTT-------------------------------------------------E
T ss_pred             chhhcchhhhhhcccccccc-CCChhhccc-------------------------------------------------c
Confidence            23444 46899999999998 677554321                                                 2


Q ss_pred             hhhhhhCCC-CCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049          327 ILAGIILSN-KSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV  405 (517)
Q Consensus       327 ~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  405 (517)
                      .++.+++++ |.++...+..|..+++|+.|||++|+|+...+..|   .+|+.|.+.++.-...+| .+..+++|+.+++
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l  253 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASL  253 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence            344555554 44443333467788888888888888884433334   445555544443333565 4777888888888


Q ss_pred             cCCc
Q 036049          406 SDNY  409 (517)
Q Consensus       406 ~~N~  409 (517)
                      .++.
T Consensus       254 ~~~~  257 (350)
T 4ay9_X          254 TYPS  257 (350)
T ss_dssp             SCHH
T ss_pred             CCCc
Confidence            7643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=6.7e-23  Score=205.27  Aligned_cols=240  Identities=18%  Similarity=0.238  Sum_probs=140.9

Q ss_pred             ccccCCCCCEEEcCCCCCCCCCCchh----hhhcccCCcEEEccCCCC---cccCCccC-------CCCCCCcEEEccCC
Q 036049           82 SLYKLVHLEWLNLALNDFNSSEIQPE----IINLSCSLKLLDLRSCGF---WGKVPHSI-------GNFTRLQFLYLGFN  147 (517)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~~~~L~~L~Ls~n~l---~~~~p~~~-------~~l~~L~~L~Ls~n  147 (517)
                      .+..+++|++|+|++|.++.. .+..    +..+. +|++|+|++|.+   .+.+|..+       ..+++|++|+|++|
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTE-AARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHH-HHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHhcCCCccEEECCCCCCCHH-HHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            445556666666666655432 1111    22333 666666666432   23334333       56666666666666


Q ss_pred             cccc----cccccccCCccccEEEcccccccccCchhh----hcC---------CcccccccccccCcceeccccccc--
Q 036049          148 NFSG----DLLGSIGNLRSLEAIYMSKCNFSGQITSSL----RNL---------TELVVLDMAQNSYGGTMEIEGKVH--  208 (517)
Q Consensus       148 ~i~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~l~~N~l~~~~~~~~~~~--  208 (517)
                      .+++    .+|..+..+++|++|+|++|.++...+..+    ..+         ++|++|++++|+++.     +.++  
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~~l  179 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-----GSMKEW  179 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-----GGHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-----HHHHHH
Confidence            6665    355566666667777777766653333222    223         667777777776641     1222  


Q ss_pred             -cccccccCCCCCeEeccCCcccc-----cCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC----CCCChhhhhccc
Q 036049          209 -KWLLDPNMQNLNALNLSHNLLTG-----FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT----GKLPSKSFLCWN  278 (517)
Q Consensus       209 -~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~~l~  278 (517)
                       ..+..  +++|++|++++|.++.     ..+            ..+..+++|++|+|++|.++    +.+|. .+..  
T Consensus       180 ~~~l~~--~~~L~~L~L~~n~l~~~g~~~l~~------------~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~--  242 (386)
T 2ca6_A          180 AKTFQS--HRLLHTVKMVQNGIRPEGIEHLLL------------EGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKS--  242 (386)
T ss_dssp             HHHHHH--CTTCCEEECCSSCCCHHHHHHHHH------------TTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGG--
T ss_pred             HHHHHh--CCCcCEEECcCCCCCHhHHHHHHH------------HHhhcCCCccEEECcCCCCCcHHHHHHHH-HHcc--
Confidence             22333  6677777777776662     111            02355667777777777764    12221 1111  


Q ss_pred             ccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCccc----Ccccc--cCCCCC
Q 036049          279 AMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGA----IPASI--SNLKGL  352 (517)
Q Consensus       279 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~--~~l~~L  352 (517)
                                                                    .+.|+.|+|++|.+++.    ++..+  +.+++|
T Consensus       243 ----------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L  276 (386)
T 2ca6_A          243 ----------------------------------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL  276 (386)
T ss_dssp             ----------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred             ----------------------------------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence                                                          23455566666666543    45555  348999


Q ss_pred             CeEeCcCccccc----cCChhc-cCCCCCCeeeCCCCcccccCc
Q 036049          353 QVLNLHNNNLQG----HIPSCL-GNLTNLESLDLSNNKFSGRIP  391 (517)
Q Consensus       353 ~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p  391 (517)
                      +.|+|++|.+++    .+|..+ .++++|++|+|++|++++..+
T Consensus       277 ~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999999997    477777 668999999999999997653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1e-21  Score=192.74  Aligned_cols=246  Identities=17%  Similarity=0.154  Sum_probs=179.0

Q ss_pred             CCCEEEcCCCCCCCCCCchhhhhc--ccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccccc-ccccccCCcccc
Q 036049           88 HLEWLNLALNDFNSSEIQPEIINL--SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGD-LLGSIGNLRSLE  164 (517)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~  164 (517)
                      .++.++++++.+.    +..+..+  . +++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~-~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQ-GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHT-TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hheeeccccccCC----HHHHHhhhhc-cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            4789999998874    4455555  4 899999999998666554 66789999999999998865 778888999999


Q ss_pred             EEEcccccccccCchhhhcCCcccccccccc-cCcceeccccccccccccccCCCCCeEeccCC-cccccCCCCCCCCCC
Q 036049          165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQN-SYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN-LLTGFDQHLVLLPGN  242 (517)
Q Consensus       165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ll~~~  242 (517)
                      +|++++|.+++..+..+..+++|++|++++| .+++.     .++..+..  +++|++|++++| .+++...        
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----~l~~~~~~--~~~L~~L~l~~~~~l~~~~~--------  186 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQTLLSS--CSRLDELNLSWCFDFTEKHV--------  186 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHHHHHH--CTTCCEEECCCCTTCCHHHH--------
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----HHHHHHhc--CCCCCEEcCCCCCCcChHHH--------
Confidence            9999999988778888888999999999988 56521     24444444  778888888887 6664210        


Q ss_pred             CCCCCCCCCCC-cccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccC
Q 036049          243 NEEPRTGCGFS-KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAY  321 (517)
Q Consensus       243 ~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (517)
                         +..+..++ +|++|++++|.+.                                                       
T Consensus       187 ---~~~~~~l~~~L~~L~l~~~~~~-------------------------------------------------------  208 (336)
T 2ast_B          187 ---QVAVAHVSETITQLNLSGYRKN-------------------------------------------------------  208 (336)
T ss_dssp             ---HHHHHHSCTTCCEEECCSCGGG-------------------------------------------------------
T ss_pred             ---HHHHHhcccCCCEEEeCCCccc-------------------------------------------------------
Confidence               00124456 6777777766321                                                       


Q ss_pred             CCchhhhhhhhCCCCCCc-ccCcccccCCCCCCeEeCcCcc-ccccCChhccCCCCCCeeeCCCCc-ccccCccccccCC
Q 036049          322 NKIPDILAGIILSNKSFD-GAIPASISNLKGLQVLNLHNNN-LQGHIPSCLGNLTNLESLDLSNNK-FSGRIPQQLVELT  398 (517)
Q Consensus       322 ~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~  398 (517)
                                      ++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..++
T Consensus       209 ----------------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~  272 (336)
T 2ast_B          209 ----------------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  272 (336)
T ss_dssp             ----------------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             ----------------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence                            11 1234455678899999999999 777788889999999999999995 4333334688899


Q ss_pred             CCCEEeccCCcccccCCCC--CcC-CccCCCcccCCCC
Q 036049          399 FLAFFNVSDNYLTGLIPQG--KQF-ATFDNTSFDGNSG  433 (517)
Q Consensus       399 ~L~~L~l~~N~l~~~~p~~--~~~-~~l~~~~~~~Np~  433 (517)
                      +|+.|++++|     +++.  ..+ ..++.+++.+|..
T Consensus       273 ~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l  305 (336)
T 2ast_B          273 TLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHF  305 (336)
T ss_dssp             TCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCS
T ss_pred             CCCEEeccCc-----cCHHHHHHHHhhCcceEEecccC
Confidence            9999999999     3332  122 3366777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=2.2e-21  Score=201.54  Aligned_cols=115  Identities=20%  Similarity=0.227  Sum_probs=74.7

Q ss_pred             CCCCCCCCCCCCCc-----cccee-ecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhh
Q 036049           36 MASWKPEEGNVDCC-----SWDGV-HCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII  109 (517)
Q Consensus        36 ~~~w~~~~~~~~~C-----~w~gv-~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  109 (517)
                      +.+|..   +.++|     .|.|+ .|..  .+++.|+|++|.+++ +|.  .+  +++|++|+|++|.++.  +| .  
T Consensus        33 l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip-~--   97 (571)
T 3cvr_A           33 WDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP-E--   97 (571)
T ss_dssp             HHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC-C--
T ss_pred             HHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc-c--
Confidence            345654   45667     69988 6753  478888888888876 443  33  3678888888888774  56 1  


Q ss_pred             hcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccccccc
Q 036049          110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS  174 (517)
Q Consensus       110 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~  174 (517)
                       ..++|++|++++|.+++ +|. |.+  +|++|+|++|.+++ +|.   .+++|++|+|++|.++
T Consensus        98 -~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           98 -LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             -CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             -ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence             22377777777777754 555 544  67777777776664 444   4566666666666655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=4.9e-21  Score=174.41  Aligned_cols=178  Identities=19%  Similarity=0.226  Sum_probs=123.9

Q ss_pred             CCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhh-hcccCCcEEEccCCCC
Q 036049           47 DCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII-NLSCSLKLLDLRSCGF  125 (517)
Q Consensus        47 ~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~l  125 (517)
                      ..|.|.++.|...            +++. +|.  .  -.++|++|++++|.++.  +++..+ .+. +|++|++++|.+
T Consensus         5 C~C~~~~v~c~~~------------~l~~-~p~--~--~~~~l~~L~l~~n~l~~--~~~~~~~~l~-~L~~L~l~~n~l   64 (208)
T 2o6s_A            5 CSCSGTTVECYSQ------------GRTS-VPT--G--IPAQTTYLDLETNSLKS--LPNGVFDELT-SLTQLYLGGNKL   64 (208)
T ss_dssp             CEEETTEEECCSS------------CCSS-CCS--C--CCTTCSEEECCSSCCCC--CCTTTTTTCT-TCSEEECCSSCC
T ss_pred             CEECCCEEEecCC------------CccC-CCC--C--CCCCCcEEEcCCCccCc--CChhhhcccc-cCcEEECCCCcc
Confidence            3488999999642            2322 222  1  23577888888888775  555443 444 788888888887


Q ss_pred             cccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccc
Q 036049          126 WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEG  205 (517)
Q Consensus       126 ~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~  205 (517)
                      .+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++       
T Consensus        65 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------  137 (208)
T 2o6s_A           65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------  137 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------
T ss_pred             CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------
Confidence            6555556777888888888888887665666777888888888888887666666777888888888888776       


Q ss_pred             ccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChh
Q 036049          206 KVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK  272 (517)
Q Consensus       206 ~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  272 (517)
                      .++.. +..  +++|++|++++|.+.+                   .+++|+.|+++.|+++|.+|..
T Consensus       138 ~~~~~~~~~--l~~L~~L~l~~N~~~~-------------------~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          138 SVPDGVFDR--LTSLQYIWLHDNPWDC-------------------TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             CCCTTTTTT--CTTCCEEECCSCCBCC-------------------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             eeCHHHhcc--CCCccEEEecCCCeec-------------------CCCCHHHHHHHHHhCCceeecc
Confidence            33333 333  7788888888886653                   3567788888888888887754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=2.8e-20  Score=169.33  Aligned_cols=152  Identities=21%  Similarity=0.203  Sum_probs=107.6

Q ss_pred             CEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcc
Q 036049           90 EWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS  169 (517)
Q Consensus        90 ~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~  169 (517)
                      +.++.+++.++.  +|..+.   ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        10 ~~v~c~~~~l~~--~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRTS--VPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCSS--CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCccC--CCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            466777777765  554432   378888888888876666667888888888888888886666667888888888888


Q ss_pred             cccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCC
Q 036049          170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT  248 (517)
Q Consensus       170 ~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~  248 (517)
                      +|.+++..+..|..+++|++|++++|.++       .++.. +..  +++|++|++++|.++++++.            .
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~--l~~L~~L~l~~N~l~~~~~~------------~  143 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ-------SLPDGVFDK--LTQLKDLRLYQNQLKSVPDG------------V  143 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTT--CTTCCEEECCSSCCSCCCTT------------T
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCc-------ccCHhHhcc--CCcCCEEECCCCccceeCHH------------H
Confidence            88888666666777888888888888776       33332 333  67777777777777765433            2


Q ss_pred             CCCCCcccEEEccCCcCCC
Q 036049          249 GCGFSKLRIIDLSDNRFTG  267 (517)
Q Consensus       249 ~~~l~~L~~L~Ls~N~l~~  267 (517)
                      +..+++|++|++++|.+.+
T Consensus       144 ~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          144 FDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             TTTCTTCCEEECCSCCBCC
T ss_pred             hccCCCccEEEecCCCeec
Confidence            4566777777777776653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=2.8e-20  Score=193.32  Aligned_cols=195  Identities=19%  Similarity=0.227  Sum_probs=116.3

Q ss_pred             CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEE
Q 036049           88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY  167 (517)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~  167 (517)
                      +|++|++++|.+++  +|..++   ++|++|+|++|.+. .+|   ..+++|++|++++|.|++ +|. |.+  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~--lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS--LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC--CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc--cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            66666666666655  555442   26666666666664 455   335666666666666664 444 443  666666


Q ss_pred             cccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCC
Q 036049          168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR  247 (517)
Q Consensus       168 L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~  247 (517)
                      |++|.+++ +|.   .+++|++|++++|.++       .+|.   .  +++|++|++++|.+++++.             
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-------~lp~---~--l~~L~~L~Ls~N~L~~lp~-------------  177 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLT-------MLPE---L--PTSLEVLSVRNNQLTFLPE-------------  177 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCS-------CCCC---C--CTTCCEEECCSSCCSCCCC-------------
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccC-------cCCC---c--CCCcCEEECCCCCCCCcch-------------
Confidence            66666664 443   4566666666666655       2333   1  4556666666666555321             


Q ss_pred             CCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhh
Q 036049          248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI  327 (517)
Q Consensus       248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                       +.  ++|++|+|++|.|+ .+|.  +..  +                                                
T Consensus       178 -l~--~~L~~L~Ls~N~L~-~lp~--~~~--~------------------------------------------------  201 (571)
T 3cvr_A          178 -LP--ESLEALDVSTNLLE-SLPA--VPV--R------------------------------------------------  201 (571)
T ss_dssp             -CC--TTCCEEECCSSCCS-SCCC--CC----------------------------------------------------
T ss_pred             -hh--CCCCEEECcCCCCC-chhh--HHH--h------------------------------------------------
Confidence             11  45666666666555 4442  100  0                                                


Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCC
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT  398 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  398 (517)
                                       -+...+.|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus       202 -----------------L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          202 -----------------NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -----------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             -----------------hhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence                             0011233588999999998 6788777889999999999999888887776653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=1.9e-22  Score=213.72  Aligned_cols=317  Identities=13%  Similarity=0.045  Sum_probs=175.6

Q ss_pred             CcEEEEEcCCCCceee----eCCCcccccCCCCCEEEcCCCCCCCC---CCchhhhhcccCCcEEEccCCCCcccCCccC
Q 036049           61 GHVVKLNLSHSCLFGS----INSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLKLLDLRSCGFWGKVPHSI  133 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  133 (517)
                      .++++|+|++|.+++.    ++.  .+..+++|++|++++|.+++.   .++..+..+. +|++|++++|.+.+ +|..+
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~~~~  239 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LVGFF  239 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GHHHH
T ss_pred             CCCCEEECccccccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HHHHH
Confidence            5799999999987654    222  456788999999999988631   1233334454 89999999988744 55666


Q ss_pred             CCCCCCcEEEccCCccc---ccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceec--------
Q 036049          134 GNFTRLQFLYLGFNNFS---GDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTME--------  202 (517)
Q Consensus       134 ~~l~~L~~L~Ls~n~i~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~--------  202 (517)
                      ..+++|++|+++.....   ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+++...        
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            66777777777643221   112223344444444444443222 333444444444444444444321000        


Q ss_pred             -----------cccccccccccccCCCCCeEeccC-----------CcccccCCCCCCCCCCCCCCCCCCCCCcccEEEc
Q 036049          203 -----------IEGKVHKWLLDPNMQNLNALNLSH-----------NLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL  260 (517)
Q Consensus       203 -----------~~~~~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~L  260 (517)
                                 ..+.++.....  +++|++|++++           |.+++....           .....+++|++|++
T Consensus       319 ~L~~L~L~~~~~~~~l~~~~~~--~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          319 NLEVLETRNVIGDRGLEVLAQY--CKQLKRLRIERGADEQGMEDEEGLVSQRGLI-----------ALAQGCQELEYMAV  385 (592)
T ss_dssp             TCCEEEEEGGGHHHHHHHHHHH--CTTCCEEEEECCCCSSTTSSTTCCCCHHHHH-----------HHHHHCTTCSEEEE
T ss_pred             CCCEEeccCccCHHHHHHHHHh--CCCCCEEEeecCccccccccccCccCHHHHH-----------HHHhhCccCeEEEe
Confidence                       00011211122  45555555552           333321000           00123556666666


Q ss_pred             cCCcCCCCCChhhhhcccccceeccCccc---ccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCC
Q 036049          261 SDNRFTGKLPSKSFLCWNAMKIVNASELR---YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKS  337 (517)
Q Consensus       261 s~N~l~~~~p~~~~~~l~~L~~L~l~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  337 (517)
                      +.|.+++..+......+++|+.|+++.+.   .+.....     .            .+ ........++|+.|+++.|.
T Consensus       386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~-----~------------~~-~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL-----D------------NG-VRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC-----H------------HH-HHHHHHHCTTCCEEEEECCG
T ss_pred             ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH-----H------------HH-HHHHHHhCCCCCEEEEecCC
Confidence            66665543333333335556665554211   1110000     0            00 00001125678888887543


Q ss_pred             --CcccCccccc-CCCCCCeEeCcCccccc-cCChhccCCCCCCeeeCCCCccccc-CccccccCCCCCEEeccCCcccc
Q 036049          338 --FDGAIPASIS-NLKGLQVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTG  412 (517)
Q Consensus       338 --l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~  412 (517)
                        +++..+..+. .+++|+.|+|++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|++|++++|+++.
T Consensus       448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence              6655444443 47889999999999875 3455567889999999999998754 44445678999999999999875


Q ss_pred             c
Q 036049          413 L  413 (517)
Q Consensus       413 ~  413 (517)
                      .
T Consensus       528 ~  528 (592)
T 3ogk_B          528 T  528 (592)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=7e-23  Score=217.01  Aligned_cols=344  Identities=13%  Similarity=0.060  Sum_probs=231.6

Q ss_pred             cEEEEEcCCCCceee--eCCCcccccCCCCCEEEcCCCCCCCCC---CchhhhhcccCCcEEEccCCCCc----ccCCcc
Q 036049           62 HVVKLNLSHSCLFGS--INSSSSLYKLVHLEWLNLALNDFNSSE---IQPEIINLSCSLKLLDLRSCGFW----GKVPHS  132 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~~L~~L~Ls~n~l~----~~~p~~  132 (517)
                      ++++|+|+++.-...  ++.  ....+++|++|+|++|.+++..   ++.....+. +|++|++++|.+.    +.++..
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~  215 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLS--IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLETI  215 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHH--HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHH--HHhhCCCCCEEECccccccCcchhHHHHHHhcCC-CccEEEeeccCCCccCHHHHHHH
Confidence            499999999862111  111  3347899999999999986642   222333444 9999999999986    334455


Q ss_pred             CCCCCCCcEEEccCCcccccccccccCCccccEEEccccccc---ccCchhhhcCCcccccccccccCcceecccccccc
Q 036049          133 IGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS---GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK  209 (517)
Q Consensus       133 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  209 (517)
                      +.++++|++|++++|.+.+ ++..+..+++|++|+++.....   ...+..+..+++|+.|+++++...       .+|.
T Consensus       216 ~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~l~~  287 (592)
T 3ogk_B          216 ARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-------EMPI  287 (592)
T ss_dssp             HHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-------TGGG
T ss_pred             HhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-------HHHH
Confidence            6789999999999999985 7788999999999999864433   234456778899999999886443       5666


Q ss_pred             ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc--
Q 036049          210 WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE--  287 (517)
Q Consensus       210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~--  287 (517)
                      .+..  +++|++|++++|.+++....           ..+..+++|++|+++ +.+...........+++|+.|++++  
T Consensus       288 ~~~~--~~~L~~L~Ls~~~l~~~~~~-----------~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~  353 (592)
T 3ogk_B          288 LFPF--AAQIRKLDLLYALLETEDHC-----------TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGA  353 (592)
T ss_dssp             GGGG--GGGCCEEEETTCCCCHHHHH-----------HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred             HHhh--cCCCcEEecCCCcCCHHHHH-----------HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCc
Confidence            6665  89999999999997653211           012568899999998 5554333334556678888888884  


Q ss_pred             --------ccccccccCCCcccchhhhccceeeee--cCcccc----CCCchhhhhhhhCC----CCCCccc-----Ccc
Q 036049          288 --------LRYLQDVLSPSGKLLMTTYDYLLTMNI--KGRMMA----YNKIPDILAGIILS----NKSFDGA-----IPA  344 (517)
Q Consensus       288 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~L~Ls----~n~l~~~-----~p~  344 (517)
                              +..+......   ........+..+.+  ......    .....++|+.|+++    .|.+++.     ++.
T Consensus       354 ~~~~~~~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          354 DEQGMEDEEGLVSQRGLI---ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CSSTTSSTTCCCCHHHHH---HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cccccccccCccCHHHHH---HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence                    2222211000   00001111222222  111110    11124568888886    6677753     344


Q ss_pred             cccCCCCCCeEeCcCcc--ccccCChhcc-CCCCCCeeeCCCCccccc-CccccccCCCCCEEeccCCccccc-CCCC-C
Q 036049          345 SISNLKGLQVLNLHNNN--LQGHIPSCLG-NLTNLESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTGL-IPQG-K  418 (517)
Q Consensus       345 ~~~~l~~L~~L~Ls~N~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~-~p~~-~  418 (517)
                      .+..+++|+.|++++|.  +++..+..+. .+++|++|+|++|++++. ++..+..+++|++|++++|++++. ++.. .
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence            46678999999998643  6655555544 489999999999999863 455567889999999999998754 2221 3


Q ss_pred             cCCccCCCcccCCCC
Q 036049          419 QFATFDNTSFDGNSG  433 (517)
Q Consensus       419 ~~~~l~~~~~~~Np~  433 (517)
                      .++.++.+++++|..
T Consensus       511 ~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRA  525 (592)
T ss_dssp             HCSSCCEEEEESCBC
T ss_pred             hcCccCeeECcCCcC
Confidence            467788889999873

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.2e-19  Score=167.66  Aligned_cols=159  Identities=20%  Similarity=0.178  Sum_probs=111.6

Q ss_pred             CCCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC
Q 036049           45 NVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG  124 (517)
Q Consensus        45 ~~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~  124 (517)
                      ....|.|+++.|...            .++ .+|.  .+  .++|++|+|++|.+++. .|..+..+. +|++|+|++|.
T Consensus        15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~-~L~~L~L~~N~   75 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLI-NLKELYLGSNQ   75 (229)
T ss_dssp             TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSC
T ss_pred             CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCcc-CCcEEECCCCC
Confidence            467899999999632            232 2232  22  26778888888887763 344444555 78888888888


Q ss_pred             CcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccc
Q 036049          125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIE  204 (517)
Q Consensus       125 l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~  204 (517)
                      +....+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++ .+|..+..+++|++|++++|+++      
T Consensus        76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~------  148 (229)
T 3e6j_A           76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK------  148 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC------
T ss_pred             CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC------
Confidence            75555556777888888888888887666666777888888888888887 66777778888888888888776      


Q ss_pred             ccccc-ccccccCCCCCeEeccCCccccc
Q 036049          205 GKVHK-WLLDPNMQNLNALNLSHNLLTGF  232 (517)
Q Consensus       205 ~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~  232 (517)
                       .++. .+..  +++|++|++++|.+...
T Consensus       149 -~~~~~~~~~--l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          149 -SIPHGAFDR--LSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             -CCCTTTTTT--CTTCCEEECTTSCBCTT
T ss_pred             -ccCHHHHhC--CCCCCEEEeeCCCccCC
Confidence             3443 2333  77888888888877754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.81  E-value=9.1e-21  Score=204.01  Aligned_cols=205  Identities=13%  Similarity=0.102  Sum_probs=96.9

Q ss_pred             chHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCccccc
Q 036049            6 HDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYK   85 (517)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~   85 (517)
                      .+.++.+|+++..+..... .       ..-..|...  .+..+.|.+..+..  ++++.|+|.+|.+.... .      
T Consensus       130 ~~~~~~~l~~~~~~~~~~~-~-------~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~-~------  190 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSK-T-------AKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEAN-Q------  190 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHH-T-------TC--------------------------------------------------
T ss_pred             cccchhhhhhhhhhccccc-C-------cccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcch-h------
Confidence            4567889999987754322 1       123456442  35567798888754  58999999999886532 2      


Q ss_pred             CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccE
Q 036049           86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA  165 (517)
Q Consensus        86 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~  165 (517)
                       ..|+.++|+.|.|..                ++++.|.+ ...|+.|..+++|+.|+|++|.+. .+|..+.++++|++
T Consensus       191 -~~l~~l~Ls~~~i~~----------------~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          191 -ALLQHKKLSQYSIDE----------------DDDIENRM-VMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR  251 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred             -hHhhcCccCcccccC----------------ccccccce-ecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence             235566666665543                34444555 355666777777777777777777 56666667777888


Q ss_pred             EEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCC
Q 036049          166 IYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEE  245 (517)
Q Consensus       166 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~  245 (517)
                      |+|++|.|+ .+|..|.++++|++|+|++|.++       .+|..+..  +++|++|+|++|.|+.++.           
T Consensus       252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~--l~~L~~L~L~~N~l~~lp~-----------  310 (727)
T 4b8c_D          252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-------SLPAELGS--CFQLKYFYFFDNMVTTLPW-----------  310 (727)
T ss_dssp             CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-------SCCSSGGG--GTTCSEEECCSSCCCCCCS-----------
T ss_pred             EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-------ccChhhcC--CCCCCEEECCCCCCCccCh-----------
Confidence            888887777 67777777778888888887776       56666666  7788888888887775532           


Q ss_pred             CCCCCCCCcccEEEccCCcCCCCCCh
Q 036049          246 PRTGCGFSKLRIIDLSDNRFTGKLPS  271 (517)
Q Consensus       246 ~~~~~~l~~L~~L~Ls~N~l~~~~p~  271 (517)
                        .+..+++|++|+|++|.+++.+|.
T Consensus       311 --~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          311 --EFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             --STTSCTTCCCEECTTSCCCSHHHH
T ss_pred             --hhhcCCCccEEeCCCCccCCCChH
Confidence              247788888888888888866554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=1.2e-22  Score=215.25  Aligned_cols=352  Identities=14%  Similarity=0.076  Sum_probs=163.2

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccc-cCCCCCEEEcCCC-CCCCCCCchhhhhcccCCcEEEccCCCCcccCCcc----CC
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLY-KLVHLEWLNLALN-DFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHS----IG  134 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~----~~  134 (517)
                      .++++|+|+++.+++....  .+. .+++|++|+|++| .++...++..+..+. +|++|++++|.+.+..+..    ..
T Consensus       105 ~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCeEEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhh
Confidence            3567777777766544333  343 4667777777766 333211222222344 7777777777654433222    23


Q ss_pred             CCCCCcEEEccCCc--cccc-ccccccCCccccEEEcccccccccCchhhhcCCcccccccccccC-------cce----
Q 036049          135 NFTRLQFLYLGFNN--FSGD-LLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSY-------GGT----  200 (517)
Q Consensus       135 ~l~~L~~L~Ls~n~--i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l-------~~~----  200 (517)
                      .+++|++|++++|.  +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+..       .+.    
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            55677777777765  2211 111223457777777777632223556666666676666543321       000    


Q ss_pred             ------------e-ccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC
Q 036049          201 ------------M-EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG  267 (517)
Q Consensus       201 ------------~-~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  267 (517)
                                  . ...+.++..+..  +++|++|++++|.+++....           ..+..+++|++|++++| +..
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~l~~~~l~-----------~~~~~~~~L~~L~l~~~-~~~  327 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSV--CSRLTTLNLSYATVQSYDLV-----------KLLCQCPKLQRLWVLDY-IED  327 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHH--HTTCCEEECTTCCCCHHHHH-----------HHHTTCTTCCEEEEEGG-GHH
T ss_pred             hcCCCcccccCCcccchhhHHHHHHh--hCCCCEEEccCCCCCHHHHH-----------HHHhcCCCcCEEeCcCc-cCH
Confidence                        0 000122222223  67788888887776542110           01235677777777776 332


Q ss_pred             CCChhhhhcccccceeccCcc--------cccccccCCCcccchhhhccceeeee--cCccc----cCCCchhhhhhhhC
Q 036049          268 KLPSKSFLCWNAMKIVNASEL--------RYLQDVLSPSGKLLMTTYDYLLTMNI--KGRMM----AYNKIPDILAGIIL  333 (517)
Q Consensus       268 ~~p~~~~~~l~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~L~L  333 (517)
                      .........+++|+.|++..+        ..+......   ........+..+..  .....    ......++|+.|++
T Consensus       328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~---~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L  404 (594)
T 2p1m_B          328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV---SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL  404 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH---HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH---HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence            211222334666777766221        111100000   00000001111100  11000    00011345566666


Q ss_pred             C--C----CCCcc-----cCcccccCCCCCCeEeCcCccccccCChhccC-CCCCCeeeCCCCcccccCcccc-ccCCCC
Q 036049          334 S--N----KSFDG-----AIPASISNLKGLQVLNLHNNNLQGHIPSCLGN-LTNLESLDLSNNKFSGRIPQQL-VELTFL  400 (517)
Q Consensus       334 s--~----n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L  400 (517)
                      +  +    +.+++     .++..+..+++|+.|+|++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|
T Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L  483 (594)
T 2p1m_B          405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL  483 (594)
T ss_dssp             EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred             ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence            5  2    33331     1111234455666666655 444333333433 5666666666666654433333 445666


Q ss_pred             CEEeccCCcccccCCC--CCcCCccCCCcccCCCC
Q 036049          401 AFFNVSDNYLTGLIPQ--GKQFATFDNTSFDGNSG  433 (517)
Q Consensus       401 ~~L~l~~N~l~~~~p~--~~~~~~l~~~~~~~Np~  433 (517)
                      ++|++++|++++..+.  ...++.++.+++++|+.
T Consensus       484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            6666666666432221  12344555555655543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=4.1e-19  Score=170.28  Aligned_cols=123  Identities=22%  Similarity=0.361  Sum_probs=53.4

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      +|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred             cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence            44444444444421 22 24444444444444444443222  4444444444444444442 1 124444444444444


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT  266 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (517)
                      +|.+++       + ..+..  +++|++|++++|.+++..              .+..+++|++|++++|.++
T Consensus       121 ~n~i~~-------~-~~l~~--l~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          121 HNGISD-------I-NGLVH--LPQLESLYLGNNKITDIT--------------VLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             TSCCCC-------C-GGGGG--CTTCCEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCC
T ss_pred             CCcCCC-------C-hhhcC--CCCCCEEEccCCcCCcch--------------hhccCCCCCEEEccCCccc
Confidence            444431       1 11222  455555555555554431              1244555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=9.1e-19  Score=161.72  Aligned_cols=156  Identities=18%  Similarity=0.172  Sum_probs=137.4

Q ss_pred             CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEc
Q 036049           89 LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYM  168 (517)
Q Consensus        89 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L  168 (517)
                      -+.++.+++.++.  +|..+.   ++|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus        21 ~~~v~c~~~~l~~--ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHAS--VPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSCCSS--CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCCcCc--cCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            4578889998877  776554   49999999999998888999999999999999999999766677899999999999


Q ss_pred             ccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCC
Q 036049          169 SKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT  248 (517)
Q Consensus       169 ~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~  248 (517)
                      ++|.+++..+..|..+++|++|++++|+++       .+|..+..  +++|++|++++|+++++++.            .
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~--l~~L~~L~L~~N~l~~~~~~------------~  154 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-------ELPRGIER--LTHLTHLALDQNQLKSIPHG------------A  154 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------SCCTTGGG--CTTCSEEECCSSCCCCCCTT------------T
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-------ccCccccc--CCCCCEEECCCCcCCccCHH------------H
Confidence            999999777778899999999999999998       77877776  99999999999999987543            3


Q ss_pred             CCCCCcccEEEccCCcCCCCCC
Q 036049          249 GCGFSKLRIIDLSDNRFTGKLP  270 (517)
Q Consensus       249 ~~~l~~L~~L~Ls~N~l~~~~p  270 (517)
                      +..+++|+.|++++|.+.+..+
T Consensus       155 ~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTCTTCCEEECTTSCBCTTBG
T ss_pred             HhCCCCCCEEEeeCCCccCCcc
Confidence            5788999999999999986544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=6.7e-19  Score=168.78  Aligned_cols=172  Identities=22%  Similarity=0.316  Sum_probs=139.4

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .+++.|++++|.+...  +  .+..+++|++|++++|.+++  +++ +..+. +|++|++++|.+.+ +| .+..+++|+
T Consensus        46 ~~L~~L~l~~~~i~~~--~--~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~-~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--Q--GIQYLPNVTKLFLNGNKLTD--IKP-LANLK-NLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             CcccEEEccCCCcccC--h--hHhcCCCCCEEEccCCccCC--Ccc-cccCC-CCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            4688999999988754  2  57889999999999999987  555 66666 99999999999854 44 488999999


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      +|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++       ++. +..  +++|+
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-------~~~-l~~--l~~L~  181 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-------IVP-LAG--LTKLQ  181 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-------CGG-GTT--CTTCC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-------chh-hcC--CCccC
Confidence            999999999853  5688899999999999999854  578889999999999998873       333 444  89999


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS  271 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  271 (517)
                      +|++++|.+++++.              +..+++|+.|++++|+++ ..|.
T Consensus       182 ~L~L~~N~i~~l~~--------------l~~l~~L~~L~l~~n~i~-~~~~  217 (291)
T 1h6t_A          182 NLYLSKNHISDLRA--------------LAGLKNLDVLELFSQECL-NKPI  217 (291)
T ss_dssp             EEECCSSCCCBCGG--------------GTTCTTCSEEEEEEEEEE-CCCE
T ss_pred             EEECCCCcCCCChh--------------hccCCCCCEEECcCCccc-CCcc
Confidence            99999999887532              367889999999999987 3443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=3.3e-19  Score=163.58  Aligned_cols=157  Identities=19%  Similarity=0.235  Sum_probs=103.9

Q ss_pred             cccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC
Q 036049          188 VVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG  267 (517)
Q Consensus       188 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  267 (517)
                      +.+++++|.++       .+|..+    ...+++|++++|.+++.++..           .+..+++|++|++++|.++ 
T Consensus        14 ~~l~~s~n~l~-------~iP~~~----~~~~~~L~L~~N~l~~~~~~~-----------~~~~l~~L~~L~L~~N~i~-   70 (220)
T 2v70_A           14 TTVDCSNQKLN-------KIPEHI----PQYTAELRLNNNEFTVLEATG-----------IFKKLPQLRKINFSNNKIT-   70 (220)
T ss_dssp             TEEECCSSCCS-------SCCSCC----CTTCSEEECCSSCCCEECCCC-----------CGGGCTTCCEEECCSSCCC-
T ss_pred             CEeEeCCCCcc-------cCccCC----CCCCCEEEcCCCcCCccCchh-----------hhccCCCCCEEECCCCcCC-
Confidence            46777777776       566544    335677777777777664321           2456777777777777776 


Q ss_pred             CCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCccccc
Q 036049          268 KLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS  347 (517)
Q Consensus       268 ~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  347 (517)
                      .++...|..                                                +..|+.|++++|.+++..+..|.
T Consensus        71 ~i~~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~  102 (220)
T 2v70_A           71 DIEEGAFEG------------------------------------------------ASGVNEILLTSNRLENVQHKMFK  102 (220)
T ss_dssp             EECTTTTTT------------------------------------------------CTTCCEEECCSSCCCCCCGGGGT
T ss_pred             EECHHHhCC------------------------------------------------CCCCCEEECCCCccCccCHhHhc
Confidence            333322222                                                33455566666777766666677


Q ss_pred             CCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049          348 NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       348 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  415 (517)
                      .+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            77777777777777776667777777777777777777776667777777777777777777776544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=6.6e-19  Score=161.57  Aligned_cols=127  Identities=14%  Similarity=0.118  Sum_probs=65.3

Q ss_pred             EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh-hhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEE
Q 036049           65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE-IINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLY  143 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  143 (517)
                      .+++++|.++. +|.  .+  ...+++|+|++|.++.. .+.. +..+. +|++|+|++|.+.+..+..|.++++|++|+
T Consensus        15 ~l~~s~n~l~~-iP~--~~--~~~~~~L~L~~N~l~~~-~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           15 TVDCSNQKLNK-IPE--HI--PQYTAELRLNNNEFTVL-EATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             EEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEE-CCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             EeEeCCCCccc-Ccc--CC--CCCCCEEEcCCCcCCcc-CchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            45555666653 332  22  22445666666666542 1222 23333 566666666665554444555555566666


Q ss_pred             ccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          144 LGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       144 Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      |++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|+++
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence            6655555555555555555555555555555444444444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=1.9e-19  Score=178.21  Aligned_cols=93  Identities=24%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             cccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc---ccCCCCCEEeccCCcccccCCCC-CcC
Q 036049          345 SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL---VELTFLAFFNVSDNYLTGLIPQG-KQF  420 (517)
Q Consensus       345 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~l~~N~l~~~~p~~-~~~  420 (517)
                      .|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|+|++|+|++.++.. ..+
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  186 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL  186 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence            34455556666666666655555555666666666666666653322223   34556666666666665433221 111


Q ss_pred             Cc--cCCCcccCCCCCCCC
Q 036049          421 AT--FDNTSFDGNSGLCGK  437 (517)
Q Consensus       421 ~~--l~~~~~~~Np~~c~~  437 (517)
                      ..  +..+++.+||+.|+|
T Consensus       187 ~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          187 PAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             CHHHHTTEECCSSCEECCH
T ss_pred             cHhhcceEEecCCCccCCc
Confidence            11  234556666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=2.5e-21  Score=202.16  Aligned_cols=192  Identities=20%  Similarity=0.225  Sum_probs=135.9

Q ss_pred             CCCCCCcEEEccCCcccccccccccCCccccEEEccccc-------------ccccCchhhhcCCcccccc-cccccCcc
Q 036049          134 GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN-------------FSGQITSSLRNLTELVVLD-MAQNSYGG  199 (517)
Q Consensus       134 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-l~~N~l~~  199 (517)
                      ..+++|+.|+|++|.++ .+|..++.+++|++|++++|.             +.+..|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56788888888888887 778888888888888887775             4566777888888888888 6666432 


Q ss_pred             eeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccc
Q 036049          200 TMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNA  279 (517)
Q Consensus       200 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~  279 (517)
                                        +|+.+.+++|.++.+++                  ..|+.|++++|.++ .+|.  +..   
T Consensus       424 ------------------~L~~l~l~~n~i~~l~~------------------~~L~~L~Ls~n~l~-~lp~--~~~---  461 (567)
T 1dce_A          424 ------------------DLRSKFLLENSVLKMEY------------------ADVRVLHLAHKDLT-VLCH--LEQ---  461 (567)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHH------------------TTCSEEECTTSCCS-SCCC--GGG---
T ss_pred             ------------------hhhhhhhhcccccccCc------------------cCceEEEecCCCCC-CCcC--ccc---
Confidence                              23344555555554321                  13666666666666 3442  222   


Q ss_pred             cceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcC
Q 036049          280 MKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHN  359 (517)
Q Consensus       280 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  359 (517)
                                                                   +..|+.|++++|.++ .+|..++.+++|+.|+|++
T Consensus       462 ---------------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          462 ---------------------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             ---------------------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred             ---------------------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence                                                         233455556666666 5666777788888888888


Q ss_pred             ccccccCChhccCCCCCCeeeCCCCcccccC-ccccccCCCCCEEeccCCcccccCCCC
Q 036049          360 NNLQGHIPSCLGNLTNLESLDLSNNKFSGRI-PQQLVELTFLAFFNVSDNYLTGLIPQG  417 (517)
Q Consensus       360 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~p~~  417 (517)
                      |+|++ +| .++.+++|+.|+|++|+|++.. |..+..+++|+.|++++|++++.+|..
T Consensus       496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            88884 56 6788888888888888888665 788888888888888888888777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.4e-18  Score=159.39  Aligned_cols=134  Identities=20%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      +|++|++++|.+.+..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|.++++|++|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            34444444444433333344444444444444444444444444444444444444444443333334444444444444


Q ss_pred             cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC
Q 036049          194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG  267 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  267 (517)
                      +|.+++      ..+..+..  +++|++|+|++|.++++++.            .+..+++|++|++++|.+..
T Consensus       113 ~N~l~~------~~~~~~~~--l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          113 ANKINC------LRVDAFQD--LHNLNLLSLYDNKLQTIAKG------------TFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCCC------CCTTTTTT--CTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCE------eCHHHcCC--CCCCCEEECCCCcCCEECHH------------HHhCCCCCCEEEeCCCCcCC
Confidence            444441      11222222  55555555555555554332            23556667777777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=6.6e-19  Score=158.74  Aligned_cols=155  Identities=16%  Similarity=0.210  Sum_probs=120.6

Q ss_pred             ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049           82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR  161 (517)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~  161 (517)
                      ....+++|++|++++|.++.  +| .+..+. +|++|++++|.+.  .+..+..+++|++|++++|.+++..+..|+.++
T Consensus        39 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~-~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVTD--LT-GIEYAH-NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCSC--CT-TGGGCT-TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             ChhhcCCccEEeccCCCccC--hH-HHhcCC-CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            34567788888888888875  56 566666 8888888888663  334688888899999999888877788888888


Q ss_pred             cccEEEcccccccccCchhhhcCCccccccccccc-CcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCC
Q 036049          162 SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNS-YGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP  240 (517)
Q Consensus       162 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~  240 (517)
                      +|++|++++|.+++..+..+..+++|++|++++|. ++       .++ .+..  +++|++|++++|.++++.       
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-------~~~-~l~~--l~~L~~L~l~~n~i~~~~-------  175 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-------DIM-PLKT--LPELKSLNIQFDGVHDYR-------  175 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-------CCG-GGGG--CSSCCEEECTTBCCCCCT-------
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-------ccH-hhcC--CCCCCEEECCCCCCcChH-------
Confidence            89999999998887778888888899999998887 54       444 3444  888999999999888753       


Q ss_pred             CCCCCCCCCCCCCcccEEEccCCcCC
Q 036049          241 GNNEEPRTGCGFSKLRIIDLSDNRFT  266 (517)
Q Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (517)
                             .+..+++|++|++++|++.
T Consensus       176 -------~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 -------GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -------TGGGCSSCCEEEECBC---
T ss_pred             -------HhccCCCCCEEEeeCcccC
Confidence                   2367888999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=2.4e-18  Score=180.71  Aligned_cols=146  Identities=23%  Similarity=0.334  Sum_probs=69.8

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      +|+.|++++|.+... +   .+..+++|+.|+|++|.+.+  +++ +..+. +|++|+|++|.+.+ +| .+..+++|++
T Consensus        44 ~L~~L~l~~n~i~~l-~---~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~-~L~~L~Ls~N~l~~-l~-~l~~l~~L~~  113 (605)
T 1m9s_A           44 SIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTD--IKP-LTNLK-NLGWLFLDENKIKD-LS-SLKDLKKLKS  113 (605)
T ss_dssp             TCCCCBCTTCCCCCC-T---TGGGCTTCCEEECTTSCCCC--CGG-GGGCT-TCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred             CCCEEECcCCCCCCC-h---HHccCCCCCEEEeeCCCCCC--Chh-hccCC-CCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence            445555555554322 1   34455555555555555544  333 33333 55555555555532 22 3555555555


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA  221 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~  221 (517)
                      |+|++|.+.+ + ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+       ++. +..  +++|+.
T Consensus       114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-------~~~-l~~--l~~L~~  179 (605)
T 1m9s_A          114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-------IVP-LAG--LTKLQN  179 (605)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-------CGG-GTT--CTTCCE
T ss_pred             EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-------chh-hcc--CCCCCE
Confidence            5555555553 1 2345555555555555555432  344555555555555555442       111 222  455555


Q ss_pred             EeccCCcccc
Q 036049          222 LNLSHNLLTG  231 (517)
Q Consensus       222 L~Ls~n~l~~  231 (517)
                      |+|++|.|++
T Consensus       180 L~Ls~N~i~~  189 (605)
T 1m9s_A          180 LYLSKNHISD  189 (605)
T ss_dssp             EECCSSCCCB
T ss_pred             EECcCCCCCC
Confidence            5555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.4e-18  Score=159.30  Aligned_cols=133  Identities=17%  Similarity=0.217  Sum_probs=104.8

Q ss_pred             CCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccE
Q 036049           87 VHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA  165 (517)
Q Consensus        87 ~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~  165 (517)
                      ++|++|++++|.++.  +++ .+..+. +|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~--i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIKV--IPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCCE--ECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCC--cCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence            578888888888876  555 344444 8888888888887777888888888888888888888665666788888888


Q ss_pred             EEcccccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCCeEeccCCcccc
Q 036049          166 IYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHNLLTG  231 (517)
Q Consensus       166 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~  231 (517)
                      |+|++|.+++..|..|..+++|++|++++|.++       .++. .+..  +++|++|++++|.+..
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~--l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-------TIAKGTFSP--LRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTT--CTTCCEEECCSSCEEC
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-------EECHHHHhC--CCCCCEEEeCCCCcCC
Confidence            888888888777888888888888888888887       3333 3444  7888888888888865

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=4.7e-18  Score=178.46  Aligned_cols=188  Identities=22%  Similarity=0.323  Sum_probs=153.4

Q ss_pred             EEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049           63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL  142 (517)
Q Consensus        63 l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  142 (517)
                      +..+.+..+.+....    .+..+++|+.|++++|.+..  ++ .+..+. +|++|+|++|.+.+..|  +..+++|+.|
T Consensus        23 l~~l~l~~~~i~~~~----~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV----TQNELNSIDQIIANNSDIKS--VQ-GIQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHTTCSCTTSEE----CHHHHTTCCCCBCTTCCCCC--CT-TGGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHhccCCCccccc----chhcCCCCCEEECcCCCCCC--Ch-HHccCC-CCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            445566666665544    45788999999999999987  54 566666 99999999999966544  8999999999


Q ss_pred             EccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeE
Q 036049          143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNAL  222 (517)
Q Consensus       143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  222 (517)
                      +|++|.+.+ ++ .+..+++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+++       + ..+..  +++|+.|
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-------l-~~l~~--l~~L~~L  158 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-------I-TVLSR--LTKLDTL  158 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-------C-GGGGS--CTTCSEE
T ss_pred             ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-------c-hhhcc--cCCCCEE
Confidence            999999985 33 79999999999999999985 3 468999999999999999983       3 34444  9999999


Q ss_pred             eccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccc
Q 036049          223 NLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL  291 (517)
Q Consensus       223 ~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l  291 (517)
                      +|++|.+++.++              +..+++|+.|+|++|.+++ +|  .+..+++|+.|+++++...
T Consensus       159 ~Ls~N~l~~~~~--------------l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          159 SLEDNQISDIVP--------------LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             ECCSSCCCCCGG--------------GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEE
T ss_pred             ECcCCcCCCchh--------------hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCc
Confidence            999999998654              3778999999999999984 54  3778888888888875443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=3e-18  Score=169.66  Aligned_cols=176  Identities=19%  Similarity=0.161  Sum_probs=136.4

Q ss_pred             EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhh--hcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049           65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII--NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL  142 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  142 (517)
                      .+++++++++. +|.  .+  ...+++|+|++|.++.  +++..+  .+. +|++|+|++|.|.+..+..|.++++|++|
T Consensus        22 ~l~c~~~~l~~-iP~--~~--~~~l~~L~Ls~N~l~~--l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQ--SL--PSYTALLDLSHNNLSR--LRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             EEECCSSCCSS-CCS--SC--CTTCSEEECCSSCCCE--ECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             EEEeCCCCcCc-cCc--cC--CCCCCEEECCCCCCCc--cChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            56777777764 343  33  2468999999999987  565554  455 99999999999987777889999999999


Q ss_pred             EccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccccccccc--ccCCCCC
Q 036049          143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLD--PNMQNLN  220 (517)
Q Consensus       143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~--~~l~~L~  220 (517)
                      +|++|+++...+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++       .+|..++.  ..+++|+
T Consensus        94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-------~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-------RFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------SCCGGGTC----CTTCC
T ss_pred             ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-------eeCHHHhcCcccCCcCC
Confidence            99999999777778999999999999999999888888999999999999999887       55555431  1278888


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCc--ccEEEccCCcCCC
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSK--LRIIDLSDNRFTG  267 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~--L~~L~Ls~N~l~~  267 (517)
                      +|+|++|+|++++..            .+..++.  ++.|+|++|.+..
T Consensus       167 ~L~L~~N~l~~l~~~------------~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          167 LLDLSSNKLKKLPLT------------DLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             EEECCSSCCCCCCHH------------HHHHSCHHHHTTEECCSSCEEC
T ss_pred             EEECCCCCCCccCHH------------HhhhccHhhcceEEecCCCccC
Confidence            888888888876432            2244554  4778888888763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=1.7e-20  Score=198.76  Aligned_cols=309  Identities=14%  Similarity=0.063  Sum_probs=168.2

Q ss_pred             CcEEEEEcCCC-Cceee-eCCCcccccCCCCCEEEcCCCCCCCCCCchhhh---hcccCCcEEEccCCC--Ccc-cCCcc
Q 036049           61 GHVVKLNLSHS-CLFGS-INSSSSLYKLVHLEWLNLALNDFNSSEIQPEII---NLSCSLKLLDLRSCG--FWG-KVPHS  132 (517)
Q Consensus        61 ~~l~~L~Ls~n-~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~~~L~~L~Ls~n~--l~~-~~p~~  132 (517)
                      .++++|+|++| .++.. ++.  .+.++++|++|+|++|.+++. .+..+.   ...++|++|++++|.  +.. .++..
T Consensus       130 ~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          130 KNFKVLVLSSCEGFSTDGLAA--IAATCRNLKELDLRESDVDDV-SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             TTCCEEEEESCEEEEHHHHHH--HHHHCTTCCEEECTTCEEECC-CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred             CCCcEEeCCCcCCCCHHHHHH--HHHhCCCCCEEeCcCCccCCc-chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence            57888888877 44321 222  344678888888888876553 222222   122377888887775  211 11111


Q ss_pred             CCCCCCCcEEEccCC-cccccccccccCCccccEEEccccc--------------------------cc----ccCchhh
Q 036049          133 IGNFTRLQFLYLGFN-NFSGDLLGSIGNLRSLEAIYMSKCN--------------------------FS----GQITSSL  181 (517)
Q Consensus       133 ~~~l~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~L~L~~n~--------------------------l~----~~~p~~l  181 (517)
                      +..+++|++|++++| .+. .++..+..+++|++|+++.+.                          +.    ..++..+
T Consensus       207 ~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~  285 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY  285 (594)
T ss_dssp             HHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH
T ss_pred             HHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH
Confidence            234577777777777 333 355555556666666544331                          11    1233333


Q ss_pred             hcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEc-
Q 036049          182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL-  260 (517)
Q Consensus       182 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~L-  260 (517)
                      ..+++|++|++++|.+++.     .+...+..  +++|++|++++| ++......           ....+++|++|++ 
T Consensus       286 ~~~~~L~~L~L~~~~l~~~-----~l~~~~~~--~~~L~~L~l~~~-~~~~~l~~-----------l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSY-----DLVKLLCQ--CPKLQRLWVLDY-IEDAGLEV-----------LASTCKDLRELRVF  346 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHH-----HHHHHHTT--CTTCCEEEEEGG-GHHHHHHH-----------HHHHCTTCCEEEEE
T ss_pred             HhhCCCCEEEccCCCCCHH-----HHHHHHhc--CCCcCEEeCcCc-cCHHHHHH-----------HHHhCCCCCEEEEe
Confidence            4567777777777765421     12222223  666777777666 32110000           0012444555554 


Q ss_pred             ---------------------------------cCCcCCCCCChhhhhcccccceeccCc-----ccccccccCCCcccc
Q 036049          261 ---------------------------------SDNRFTGKLPSKSFLCWNAMKIVNASE-----LRYLQDVLSPSGKLL  302 (517)
Q Consensus       261 ---------------------------------s~N~l~~~~p~~~~~~l~~L~~L~l~~-----~~~l~~~~~~~~~~~  302 (517)
                                                       +.|.+++..+......+++|+.|+++.     +..+.....      
T Consensus       347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~------  420 (594)
T 2p1m_B          347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL------  420 (594)
T ss_dssp             CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT------
T ss_pred             cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch------
Confidence                                             444443222222222334444444431     111100000      


Q ss_pred             hhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccC-CCCCCeEeCcCccccccCChhc-cCCCCCCeee
Q 036049          303 MTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISN-LKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLD  380 (517)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~  380 (517)
                      .           .+ ........++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+
T Consensus       421 ~-----------~~-~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          421 D-----------IG-FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             H-----------HH-HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred             h-----------hH-HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence            0           00 000011245788999977 676655555554 8899999999999976655555 6789999999


Q ss_pred             CCCCcccccCcc-ccccCCCCCEEeccCCccc
Q 036049          381 LSNNKFSGRIPQ-QLVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       381 Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~  411 (517)
                      |++|.+++..+. ....+++|++|++++|+++
T Consensus       488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          488 IRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            999999654433 3455889999999999885

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=4.6e-21  Score=200.17  Aligned_cols=217  Identities=20%  Similarity=0.137  Sum_probs=153.5

Q ss_pred             ccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccc
Q 036049           84 YKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSL  163 (517)
Q Consensus        84 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L  163 (517)
                      ..+++|+.|+|++|.++.  +|+.+..+. +|++|++++|......|..           +..+.+.+..|..++.+++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~~--Lp~~i~~l~-~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV--LQSELESCK-ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH--HHHHHHHHH-HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHh--hHHHHHHHH-HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhc
Confidence            445666666666666654  666666666 6666666544321111110           11122455778888899999


Q ss_pred             cEEE-cccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCC
Q 036049          164 EAIY-MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGN  242 (517)
Q Consensus       164 ~~L~-L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~  242 (517)
                      +.|+ ++.|.+           ..|+.+.+++|.++       .++       ...|+.|++++|.+++++.        
T Consensus       412 ~~L~~l~~n~~-----------~~L~~l~l~~n~i~-------~l~-------~~~L~~L~Ls~n~l~~lp~--------  458 (567)
T 1dce_A          412 KAVDPMRAAYL-----------DDLRSKFLLENSVL-------KME-------YADVRVLHLAHKDLTVLCH--------  458 (567)
T ss_dssp             HHHCGGGHHHH-----------HHHHHHHHHHHHHH-------HHH-------HTTCSEEECTTSCCSSCCC--------
T ss_pred             ccCcchhhccc-----------chhhhhhhhccccc-------ccC-------ccCceEEEecCCCCCCCcC--------
Confidence            9988 666643           35667777778765       333       2358889999998887532        


Q ss_pred             CCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCC
Q 036049          243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYN  322 (517)
Q Consensus       243 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (517)
                            +..+++|+.|+|++|.++ .+|.. +..                                              
T Consensus       459 ------~~~l~~L~~L~Ls~N~l~-~lp~~-~~~----------------------------------------------  484 (567)
T 1dce_A          459 ------LEQLLLVTHLDLSHNRLR-ALPPA-LAA----------------------------------------------  484 (567)
T ss_dssp             ------GGGGTTCCEEECCSSCCC-CCCGG-GGG----------------------------------------------
T ss_pred             ------ccccccCcEeecCccccc-ccchh-hhc----------------------------------------------
Confidence                  477889999999999998 77753 333                                              


Q ss_pred             CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccC-ChhccCCCCCCeeeCCCCcccccCcc---ccccCC
Q 036049          323 KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHI-PSCLGNLTNLESLDLSNNKFSGRIPQ---QLVELT  398 (517)
Q Consensus       323 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~  398 (517)
                        ++.|+.|+|++|.+++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.|+|++|++++..|.   .+..++
T Consensus       485 --l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          485 --LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             --CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             --CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence              3456667778888885 66 7899999999999999999776 99999999999999999999966543   234489


Q ss_pred             CCCEEec
Q 036049          399 FLAFFNV  405 (517)
Q Consensus       399 ~L~~L~l  405 (517)
                      +|+.|++
T Consensus       561 ~L~~L~l  567 (567)
T 1dce_A          561 SVSSILT  567 (567)
T ss_dssp             TCSEEEC
T ss_pred             ccCccCC
Confidence            9999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=5.3e-18  Score=152.76  Aligned_cols=151  Identities=17%  Similarity=0.216  Sum_probs=128.4

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .+++.|++++|.++. ++   .+..+++|++|++++|.++.  + +.+..+. +|++|++++|.+.+..+..|+.+++|+
T Consensus        44 ~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~l~~n~~~~--~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           44 NSLTYITLANINVTD-LT---GIEYAHNIKDLTINNIHATN--Y-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HTCCEEEEESSCCSC-CT---TGGGCTTCSEEEEESCCCSC--C-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             CCccEEeccCCCccC-hH---HHhcCCCCCEEEccCCCCCc--c-hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCC
Confidence            478999999999973 33   58899999999999998765  3 4667766 999999999999887888999999999


Q ss_pred             EEEccCCcccccccccccCCccccEEEccccc-ccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN-FSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL  219 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L  219 (517)
                      +|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.++       .++ .+..  +++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-------~~~-~l~~--l~~L  183 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-------DYR-GIED--FPKL  183 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-------CCT-TGGG--CSSC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-------ChH-Hhcc--CCCC
Confidence            99999999998889999999999999999998 66 555 6899999999999999997       343 3444  8999


Q ss_pred             CeEeccCCcccc
Q 036049          220 NALNLSHNLLTG  231 (517)
Q Consensus       220 ~~L~Ls~n~l~~  231 (517)
                      ++|++++|++.+
T Consensus       184 ~~L~l~~N~i~~  195 (197)
T 4ezg_A          184 NQLYAFSQTIGG  195 (197)
T ss_dssp             CEEEECBC----
T ss_pred             CEEEeeCcccCC
Confidence            999999999865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.8e-18  Score=163.22  Aligned_cols=64  Identities=30%  Similarity=0.486  Sum_probs=35.9

Q ss_pred             ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049          346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                      +..+++|+.|+|++|++++ ++ .+..+++|++|+|++|++++.  ..+..+++|+.|++++|++++.
T Consensus       124 l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            3445556666666666553 22 355556666666666666543  4455566666666666666544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=3.9e-18  Score=160.88  Aligned_cols=170  Identities=22%  Similarity=0.293  Sum_probs=138.2

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      +++.++++.+.+++..    .+..+++|++|++++|.++.  ++ .+..+. +|++|++++|.+.+..+  +..+++|++
T Consensus        20 ~l~~l~l~~~~i~~~~----~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~-~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV----SQKELSGVQNFNGDNSNIQS--LA-GMQFFT-NLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHTCSCTTSEE----CHHHHTTCSEEECTTSCCCC--CT-TGGGCT-TCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHhcCCCccccc----chhhcCcCcEEECcCCCccc--ch-HHhhCC-CCCEEECCCCccCCChh--hccCCCCCE
Confidence            4566778888887543    57889999999999999987  55 566666 99999999999965444  999999999


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA  221 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~  221 (517)
                      |++++|++++ +|. +.. ++|++|++++|.+++.  +.+..+++|++|++++|++++       ++ .+..  +++|++
T Consensus        90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-------~~-~l~~--l~~L~~  154 (263)
T 1xeu_A           90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-------IV-MLGF--LSKLEV  154 (263)
T ss_dssp             EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-------CG-GGGG--CTTCCE
T ss_pred             EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-------Ch-HHcc--CCCCCE
Confidence            9999999995 443 333 8999999999999853  368999999999999999983       33 3444  899999


Q ss_pred             EeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049          222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS  271 (517)
Q Consensus       222 L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  271 (517)
                      |++++|.+++..              .+..+++|+.|++++|.+++ .|.
T Consensus       155 L~L~~N~i~~~~--------------~l~~l~~L~~L~l~~N~~~~-~~~  189 (263)
T 1xeu_A          155 LDLHGNEITNTG--------------GLTRLKKVNWIDLTGQKCVN-EPV  189 (263)
T ss_dssp             EECTTSCCCBCT--------------TSTTCCCCCEEEEEEEEEEC-CCE
T ss_pred             EECCCCcCcchH--------------HhccCCCCCEEeCCCCcccC-Ccc
Confidence            999999998861              34788999999999999984 353

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.9e-17  Score=148.45  Aligned_cols=113  Identities=21%  Similarity=0.304  Sum_probs=79.8

Q ss_pred             hhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049          326 DILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV  405 (517)
Q Consensus       326 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  405 (517)
                      +.|+.|++++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..|..|..+++|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            34555556666666666677788888888888888888777777888888888888888888888888888888888888


Q ss_pred             cCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049          406 SDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       406 ~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      ++|++++..+-......+....+.++...|+.|
T Consensus       134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            888888766532111122233344555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.8e-16  Score=142.01  Aligned_cols=128  Identities=21%  Similarity=0.251  Sum_probs=108.3

Q ss_pred             EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh--hhhcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049           65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE--IINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL  142 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  142 (517)
                      .+++++++++ .+|.  .+.  .+|++|++++|.++.  +++.  +..+. +|++|+|++|.+++..|..|.++++|++|
T Consensus        12 ~l~~s~~~l~-~ip~--~~~--~~l~~L~l~~n~i~~--~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           12 TVDCTGRGLK-EIPR--DIP--LHTTELLLNDNELGR--ISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             EEECTTSCCS-SCCS--CCC--TTCSEEECCSCCCCS--BCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             EEEcCCCCcC-cCcc--CCC--CCCCEEECCCCcCCc--cCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence            5566677775 3444  333  389999999999987  5543  55666 99999999999988889999999999999


Q ss_pred             EccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcce
Q 036049          143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGT  200 (517)
Q Consensus       143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  200 (517)
                      +|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+.+.
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9999999988888899999999999999999988899999999999999999998753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=143.38  Aligned_cols=114  Identities=21%  Similarity=0.356  Sum_probs=101.3

Q ss_pred             hhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEe
Q 036049          325 PDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN  404 (517)
Q Consensus       325 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  404 (517)
                      +..++.|++++|.++ .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+
T Consensus        30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            345788889999998 6778899999999999999999988888899999999999999999988888899999999999


Q ss_pred             ccCCcccccCCCC-CcCCccCCCcccCCCCCCCCCC
Q 036049          405 VSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       405 l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~~  439 (517)
                      +++|+|++.++.. ..+..+..+++.+||+.|+|.+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            9999999877653 4678889999999999998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.3e-16  Score=139.70  Aligned_cols=133  Identities=20%  Similarity=0.229  Sum_probs=65.9

Q ss_pred             CCcEEEccCCCCc-ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccc
Q 036049          114 SLKLLDLRSCGFW-GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM  192 (517)
Q Consensus       114 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  192 (517)
                      +|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..|..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            4555555555553 34444445555555555555555532  44555555555555555555444444444555555555


Q ss_pred             ccccCcceeccccccc--cccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049          193 AQNSYGGTMEIEGKVH--KWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT  266 (517)
Q Consensus       193 ~~N~l~~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (517)
                      ++|.++       .++  ..+..  +++|++|++++|.+++.++..         ...+..+++|++|++++|.+.
T Consensus       103 s~N~l~-------~~~~~~~l~~--l~~L~~L~l~~N~l~~~~~~~---------~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          103 SGNKLK-------DISTLEPLKK--LECLKSLDLFNCEVTNLNDYR---------ESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             BSSSCC-------SSGGGGGGSS--CSCCCEEECCSSGGGTSTTHH---------HHHHTTCSSCCEETTEETTSC
T ss_pred             cCCccC-------cchhHHHHhc--CCCCCEEEeeCCcCcchHHHH---------HHHHHhCccCcEecCCCCChh
Confidence            555554       222  22333  555555666655555543200         001244556666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.6e-17  Score=178.65  Aligned_cols=153  Identities=19%  Similarity=0.097  Sum_probs=89.2

Q ss_pred             CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049           87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI  166 (517)
Q Consensus        87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L  166 (517)
                      +.++.|+|.+|.+..  .+..      .|+.++|+.|.|.              .++++.|.+. ..++.|..++.|++|
T Consensus       173 ~~~~~l~L~~n~~~~--~~~~------~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L  229 (727)
T 4b8c_D          173 PLTPKIELFANGKDE--ANQA------LLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHAL  229 (727)
T ss_dssp             ------------------------------------------------------------------------CCCCCCEE
T ss_pred             CccceEEeeCCCCCc--chhh------HhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEE
Confidence            446666666666644  2222      3455555555542              2345556666 678889999999999


Q ss_pred             EcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCC
Q 036049          167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEP  246 (517)
Q Consensus       167 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~  246 (517)
                      +|++|.+. .+|..+..+++|++|+|++|.++       .+|..+..  +++|++|+|++|.|+.++.            
T Consensus       230 ~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~--l~~L~~L~Ls~N~l~~lp~------------  287 (727)
T 4b8c_D          230 DLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-------ELPAEIKN--LSNLRVLDLSHNRLTSLPA------------  287 (727)
T ss_dssp             ECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-------CCCGGGGG--GTTCCEEECTTSCCSSCCS------------
T ss_pred             ECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-------ccChhhhC--CCCCCEEeCcCCcCCccCh------------
Confidence            99999998 77877889999999999999997       78888877  9999999999999996533            


Q ss_pred             CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049          247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE  287 (517)
Q Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~  287 (517)
                       .+..+++|++|+|++|.|+ .+|.. +..+++|+.|++++
T Consensus       288 -~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          288 -ELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEG  325 (727)
T ss_dssp             -SGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECTT
T ss_pred             -hhcCCCCCCEEECCCCCCC-ccChh-hhcCCCccEEeCCC
Confidence             3578999999999999997 88865 66666666666555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=2.2e-16  Score=138.27  Aligned_cols=134  Identities=18%  Similarity=0.144  Sum_probs=73.8

Q ss_pred             CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049           87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI  166 (517)
Q Consensus        87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L  166 (517)
                      ++|++|++++|.++...+|..+..+. +|++|++++|.+.+.  ..|..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45555666655555111444444444 666666666665433  455566666666666666665455555556666666


Q ss_pred             EcccccccccC-chhhhcCCcccccccccccCcceecccccccc----ccccccCCCCCeEeccCCccccc
Q 036049          167 YMSKCNFSGQI-TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK----WLLDPNMQNLNALNLSHNLLTGF  232 (517)
Q Consensus       167 ~L~~n~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~  232 (517)
                      ++++|.+++.. +..+..+++|++|++++|.++       .++.    .+..  +++|++|++++|.+...
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-------NLNDYRESVFKL--LPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-------TSTTHHHHHHTT--CSSCCEETTEETTSCBC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-------chHHHHHHHHHh--CccCcEecCCCCChhhc
Confidence            66666665321 145556666666666666555       2332    3333  66666666666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=2.9e-16  Score=134.52  Aligned_cols=111  Identities=21%  Similarity=0.242  Sum_probs=74.3

Q ss_pred             CCcEEEccCCCCc-ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccc
Q 036049          114 SLKLLDLRSCGFW-GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM  192 (517)
Q Consensus       114 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  192 (517)
                      +|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            6777777777775 46676777777777777777777754  56777777777777777777656666666777777777


Q ss_pred             ccccCcceeccccccccccccccCCCCCeEeccCCcccccC
Q 036049          193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD  233 (517)
Q Consensus       193 ~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  233 (517)
                      ++|.+++.     ..+..+..  +++|++|++++|.+++.+
T Consensus        96 s~N~i~~~-----~~~~~~~~--l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           96 SGNKIKDL-----STIEPLKK--LENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             TTSCCCSH-----HHHGGGGG--CTTCCEEECTTCGGGGST
T ss_pred             CCCcCCCh-----HHHHHHhh--CCCCCEEeCcCCcccchH
Confidence            77776521     01133444  666666666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=2.1e-16  Score=135.40  Aligned_cols=127  Identities=21%  Similarity=0.252  Sum_probs=67.1

Q ss_pred             CcEEEEEcCCCCce-eeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           61 GHVVKLNLSHSCLF-GSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      .+++.|++++|.++ +.++.  .+..+++|++|++++|.++.  + ..+..+. +|++|++++|.+.+.+|..+..+++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTS--I-ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCC--C-TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             ccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCC--c-hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCC
Confidence            34566666666665 34444  45556666666666665554  2 3333333 55555555555544455545555555


Q ss_pred             cEEEccCCccccc-ccccccCCccccEEEcccccccccCc---hhhhcCCcccccccc
Q 036049          140 QFLYLGFNNFSGD-LLGSIGNLRSLEAIYMSKCNFSGQIT---SSLRNLTELVVLDMA  193 (517)
Q Consensus       140 ~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~  193 (517)
                      ++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5555555555532 22455555555555555555554333   345555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.9e-15  Score=135.26  Aligned_cols=126  Identities=21%  Similarity=0.223  Sum_probs=99.0

Q ss_pred             EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049           65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL  144 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  144 (517)
                      .++++++.++. +|.  .+  .++|++|+|++|.++.  +|..+..+. +|++|+|++|.+++..+..|.++++|++|+|
T Consensus        14 ~l~~~~~~l~~-ip~--~~--~~~l~~L~L~~n~i~~--ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           14 VVRCSNKGLKV-LPK--GI--PRDVTELYLDGNQFTL--VPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             EEECTTSCCSS-CCS--CC--CTTCCEEECCSSCCCS--CCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EEEcCCCCCCc-CCC--CC--CCCCCEEECCCCcCch--hHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            45666777763 343  23  2578899999998875  777776766 8899999999887777778888888999999


Q ss_pred             cCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      ++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            988888777778888888888888888888666667778888888888888775

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=2.8e-15  Score=132.32  Aligned_cols=132  Identities=20%  Similarity=0.267  Sum_probs=95.4

Q ss_pred             CcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh-hhcccCCcEEEccCCCCc
Q 036049           48 CCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI-INLSCSLKLLDLRSCGFW  126 (517)
Q Consensus        48 ~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~l~  126 (517)
                      .|.|.++.|.            +++++. +|.  .+  .++|++|++++|.++.  +++.. ..+. +|++|++++|.+.
T Consensus         6 ~C~~~~l~~~------------~~~l~~-~p~--~~--~~~l~~L~l~~n~l~~--~~~~~~~~l~-~L~~L~l~~n~l~   65 (177)
T 2o6r_A            6 SCSGTEIRCN------------SKGLTS-VPT--GI--PSSATRLELESNKLQS--LPHGVFDKLT-QLTKLSLSQNQIQ   65 (177)
T ss_dssp             EEETTEEECC------------SSCCSS-CCT--TC--CTTCSEEECCSSCCCC--CCTTTTTTCT-TCSEEECCSSCCC
T ss_pred             EeCCCEEEec------------CCCCcc-CCC--CC--CCCCcEEEeCCCcccE--eCHHHhcCcc-cccEEECCCCcce
Confidence            3778777774            334442 222  22  3678888888888876  55544 3444 8888888888886


Q ss_pred             ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcc
Q 036049          127 GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGG  199 (517)
Q Consensus       127 ~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~  199 (517)
                      +..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        66 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6666667888888888888888887666667888888888888888886555566778888888888887764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=8.7e-16  Score=135.51  Aligned_cols=135  Identities=14%  Similarity=0.148  Sum_probs=95.3

Q ss_pred             ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049           82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR  161 (517)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~  161 (517)
                      .+.++.+|++|++++|.++.  ++ .+....++|++|++++|.+.+.  ..|..+++|++|++++|.+++..+..|..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCch--hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            56677788888888888875  54 3445444788888888888654  5678888888888888888855445557888


Q ss_pred             cccEEEcccccccccCch--hhhcCCcccccccccccCcceeccccccccc----cccccCCCCCeEeccCCcccc
Q 036049          162 SLEAIYMSKCNFSGQITS--SLRNLTELVVLDMAQNSYGGTMEIEGKVHKW----LLDPNMQNLNALNLSHNLLTG  231 (517)
Q Consensus       162 ~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~  231 (517)
                      +|++|++++|.++ .+|.  .+..+++|++|++++|.++       .+|..    +..  +++|++|+++.|.+..
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-------~~~~~~~~~~~~--l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-------NKKHYRLYVIYK--VPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-------GSTTHHHHHHHH--CTTCSEETTEECCHHH
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-------CcHhHHHHHHHH--CCccceeCCCcCCHHH
Confidence            8888888888886 4454  6777777777777777775       34443    333  6667777776665543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.6e-15  Score=147.96  Aligned_cols=271  Identities=12%  Similarity=0.062  Sum_probs=162.5

Q ss_pred             cEEEEEcCCCCceeeeCCCccccc-CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCC-----
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYK-LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGN-----  135 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-----  135 (517)
                      ++++|.++++ +......  .+.. +++|++|||++|++.....+..  ... .++.+.+..|.+   .+..|.+     
T Consensus        26 ~l~~L~l~g~-i~~~~~~--~l~~~l~~L~~LdLs~n~i~~~~~~~~--~~~-~~~~~~~~~~~I---~~~aF~~~~~~~   96 (329)
T 3sb4_A           26 SITHLTLTGK-LNAEDFR--HLRDEFPSLKVLDISNAEIKMYSGKAG--TYP-NGKFYIYMANFV---PAYAFSNVVNGV   96 (329)
T ss_dssp             HCSEEEEEEE-ECHHHHH--HHHHSCTTCCEEEEEEEEECCEEESSS--SSG-GGCCEEECTTEE---CTTTTEEEETTE
T ss_pred             ceeEEEEecc-ccHHHHH--HHHHhhccCeEEecCcceeEEecCccc--ccc-cccccccccccc---CHHHhccccccc
Confidence            5677777653 2111111  3334 7889999999998872101111  111 234455555533   2345556     


Q ss_pred             ---CCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccC----c---ce-----
Q 036049          136 ---FTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSY----G---GT-----  200 (517)
Q Consensus       136 ---l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l----~---~~-----  200 (517)
                         +++|+.|+|.+ .++.+.+.+|..+++|+.|++.+|.+....+..|.++.++..+....+..    .   ..     
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence               88888888887 77766667788888888888888877766677777777776666554221    0   00     


Q ss_pred             ------e--ccccccccccccc--cCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCC
Q 036049          201 ------M--EIEGKVHKWLLDP--NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP  270 (517)
Q Consensus       201 ------~--~~~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  270 (517)
                            .  ...+.++..++..  ...+++.+.+.++-.......            ....+++|+.+++++|+++ .+|
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~------------l~~~~~~L~~l~L~~n~i~-~I~  242 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL------------IRDYMPNLVSLDISKTNAT-TIP  242 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH------------HHHHCTTCCEEECTTBCCC-EEC
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHH------------HHHhcCCCeEEECCCCCcc-eec
Confidence                  0  0000111111000  022233333332211000000            0012678999999998887 788


Q ss_pred             hhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCC
Q 036049          271 SKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLK  350 (517)
Q Consensus       271 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  350 (517)
                      ...|..+.+|+.+++.+                                                | ++...+.+|.+++
T Consensus       243 ~~aF~~~~~L~~l~l~~------------------------------------------------n-i~~I~~~aF~~~~  273 (329)
T 3sb4_A          243 DFTFAQKKYLLKIKLPH------------------------------------------------N-LKTIGQRVFSNCG  273 (329)
T ss_dssp             TTTTTTCTTCCEEECCT------------------------------------------------T-CCEECTTTTTTCT
T ss_pred             HhhhhCCCCCCEEECCc------------------------------------------------c-cceehHHHhhCCh
Confidence            87777766666655443                                                2 3334456788888


Q ss_pred             CCC-eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049          351 GLQ-VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV  405 (517)
Q Consensus       351 ~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  405 (517)
                      +|+ .+++.+ .++...+.+|.++++|+.|++++|+++...+..|.++++|+.++.
T Consensus       274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            898 999988 777666788999999999999999988777778888999988864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=5.3e-15  Score=130.57  Aligned_cols=112  Identities=20%  Similarity=0.203  Sum_probs=57.8

Q ss_pred             CCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccC
Q 036049          138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNM  216 (517)
Q Consensus       138 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l  216 (517)
                      +|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++       .++.. +..  +
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~--l   99 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-------SLPNGVFDK--L   99 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTT--C
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-------ccCHHHhhC--C
Confidence            4444444444444333333444444444444444444333333444444555555554444       22221 222  5


Q ss_pred             CCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCC
Q 036049          217 QNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP  270 (517)
Q Consensus       217 ~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  270 (517)
                      ++|++|++++|.++++++.            .+..+++|++|++++|.+.+..|
T Consensus       100 ~~L~~L~l~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          100 TQLKELALDTNQLKSVPDG------------IFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccCEEECcCCcceEeCHH------------HhcCCcccCEEEecCCCeeccCc
Confidence            6666666666666655432            23567778888888888876555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=7.4e-14  Score=139.38  Aligned_cols=169  Identities=13%  Similarity=0.076  Sum_probs=89.5

Q ss_pred             cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCcccc
Q 036049           85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE  164 (517)
Q Consensus        85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~  164 (517)
                      .+..++.+.+.++ ++.  ++...+... +|+.+.+..+ +...-...|.++ +|+.+.+.. .+......+|.++++|+
T Consensus       111 ~~~~l~~i~ip~~-i~~--I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKS--IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCTT-CCE--ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             ecCCccEEEECCc-cCE--ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            3455666665543 332  444444444 6666666554 434444555553 466666664 45545555666666666


Q ss_pred             EEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCC
Q 036049          165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE  244 (517)
Q Consensus       165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~  244 (517)
                      .+++.+|.++......|. ..+|+.+.+..+ ++       .++...+. .+++|+.+++..+ ++.+...         
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-------~I~~~aF~-~~~~L~~l~l~~~-l~~I~~~---------  243 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-------EIGSQAFL-KTSQLKTIEIPEN-VSTIGQE---------  243 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-------EECTTTTT-TCTTCCCEECCTT-CCEECTT---------
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-------eehhhHhh-CCCCCCEEecCCC-ccCcccc---------
Confidence            666666666644444444 466666666533 33       33333332 2566666666653 3333222         


Q ss_pred             CCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccC
Q 036049          245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS  286 (517)
Q Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~  286 (517)
                         +|.+ .+|+.+.+. +.++ .++...|..+.+|+.+.+.
T Consensus       244 ---aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          244 ---AFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             ---TTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEE
T ss_pred             ---cccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeC
Confidence               2333 456666663 3344 5555666666666665544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.5e-14  Score=127.55  Aligned_cols=131  Identities=16%  Similarity=0.161  Sum_probs=99.6

Q ss_pred             CCcEEEccCCCCcccCCccCCCCC-CCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFT-RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM  192 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  192 (517)
                      +|++|++++|.+. .+|. +..+. +|++|++++|.+++.  ..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            8999999999985 4554 55544 899999999999864  67888999999999999998665566688999999999


Q ss_pred             ccccCcceecccccccc--ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049          193 AQNSYGGTMEIEGKVHK--WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT  266 (517)
Q Consensus       193 ~~N~l~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (517)
                      ++|.++       .+|.  .+..  +++|++|++++|.++..+...         ...+..+++|++||+++|.+.
T Consensus        96 ~~N~i~-------~~~~~~~l~~--l~~L~~L~l~~N~i~~~~~~~---------~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           96 TNNSLV-------ELGDLDPLAS--LKSLTYLCILRNPVTNKKHYR---------LYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSCCCC-------CGGGGGGGGG--CTTCCEEECCSSGGGGSTTHH---------HHHHHHCTTCSEETTEECCHH
T ss_pred             CCCcCC-------cchhhHhhhc--CCCCCEEEecCCCCCCcHhHH---------HHHHHHCCccceeCCCcCCHH
Confidence            999886       4554  4555  888888888888887653210         001356788888888887764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=4.9e-14  Score=123.35  Aligned_cols=85  Identities=18%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      +|++|+|++|.+.+..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+++..+..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            44444444444444444444444555555555555544333344444555555555555443333344444444444444


Q ss_pred             cccCc
Q 036049          194 QNSYG  198 (517)
Q Consensus       194 ~N~l~  198 (517)
                      +|.+.
T Consensus       111 ~N~~~  115 (170)
T 3g39_A          111 NNPWD  115 (170)
T ss_dssp             SSCBC
T ss_pred             CCCCC
Confidence            44443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=5.3e-14  Score=123.13  Aligned_cols=108  Identities=25%  Similarity=0.279  Sum_probs=81.1

Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD  407 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  407 (517)
                      .+.+++++|.++ .+|..+  .++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456778888877 456554  36788888888888877777788888888888888888866666677888888888888


Q ss_pred             CcccccCCC-CCcCCccCCCcccCCCCCCCCC
Q 036049          408 NYLTGLIPQ-GKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       408 N~l~~~~p~-~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      |+|++.+|. ...+..+..+++++||+.|+|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            888877665 3456777777888888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=3.9e-16  Score=140.62  Aligned_cols=114  Identities=22%  Similarity=0.273  Sum_probs=78.1

Q ss_pred             CchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhc
Q 036049          104 IQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRN  183 (517)
Q Consensus       104 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  183 (517)
                      +|..+..+. +|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..
T Consensus        40 l~~~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           40 MDATLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             CHHHHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred             hhHHHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence            334666666 77777777777744 55 6777777777777777777 566666667777777777777774 34 5777


Q ss_pred             CCcccccccccccCcceecccccccc--ccccccCCCCCeEeccCCccccc
Q 036049          184 LTELVVLDMAQNSYGGTMEIEGKVHK--WLLDPNMQNLNALNLSHNLLTGF  232 (517)
Q Consensus       184 l~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~  232 (517)
                      +++|++|++++|.++       .++.  .+..  +++|++|++++|.+++.
T Consensus       114 l~~L~~L~l~~N~i~-------~~~~~~~l~~--l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          114 LVNLRVLYMSNNKIT-------NWGEIDKLAA--LDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHSSEEEESEEECC-------CHHHHHHHTT--TTTCSEEEECSCHHHHH
T ss_pred             CCCCCEEECCCCcCC-------chhHHHHHhc--CCCCCEEEecCCccccc
Confidence            777777777777776       2222  3333  67777777777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=3.1e-16  Score=141.25  Aligned_cols=64  Identities=25%  Similarity=0.277  Sum_probs=38.5

Q ss_pred             ccCCCCCCeEeCcCccccccCC-hhccCCCCCCeeeCCCCcccccCcc----------ccccCCCCCEEeccCCccc
Q 036049          346 ISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKFSGRIPQ----------QLVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       346 ~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~l~~N~l~  411 (517)
                      +..+++|+.|++++|++++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.||  +|.++
T Consensus       111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            4445666666666666663222 3566666777777777766655443          266677777765  55554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=8.3e-14  Score=135.82  Aligned_cols=198  Identities=16%  Similarity=0.154  Sum_probs=127.4

Q ss_pred             CCcEEEEEcCCCCce--e-----------------eeCCCccccc--------CCCCCEEEcCCCCCCCCCCchhhhhcc
Q 036049           60 TGHVVKLNLSHSCLF--G-----------------SINSSSSLYK--------LVHLEWLNLALNDFNSSEIQPEIINLS  112 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~--~-----------------~~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~~~~~~~  112 (517)
                      ..+++.|||++|.+.  .                 .++. .+|.+        +++|+.|+|.+ .++.  +++..|...
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~--I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKN--IEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT-TCCE--ECTTTTTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCH-HHhcccccccccccCCCcEEECCc-cccc--hhHHHhhcC
Confidence            357999999999887  1                 1111 25666        78888888877 6655  555555444


Q ss_pred             cCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcc----cccccccc-------------------------------
Q 036049          113 CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNF----SGDLLGSI-------------------------------  157 (517)
Q Consensus       113 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i----~~~~p~~~-------------------------------  157 (517)
                      ++|++|++++|.+....+..|.++.++..+.+..+..    ......+|                               
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            4788888888877666667777777676666554211    00000001                               


Q ss_pred             -------------------cCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCC
Q 036049          158 -------------------GNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN  218 (517)
Q Consensus       158 -------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~  218 (517)
                                         ..+++|++|+|++|.++...+..|.++++|+.|++.+| ++       .++...+. ++++
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-------~I~~~aF~-~~~~  274 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-------TIGQRVFS-NCGR  274 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTT-TCTT
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-------eehHHHhh-CChh
Confidence                               02567777777777777666667777777777777776 54       45554443 2777


Q ss_pred             CC-eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceec
Q 036049          219 LN-ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVN  284 (517)
Q Consensus       219 L~-~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  284 (517)
                      |+ .+++.+ .++.+.+.            +|.++++|+.+++++|.++ .++...|.++++|+.+.
T Consensus       275 L~~~l~l~~-~l~~I~~~------------aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          275 LAGTLELPA-SVTAIEFG------------AFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEEEEECT-TCCEECTT------------TTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             ccEEEEEcc-cceEEchh------------hhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            77 777777 56555433            4677777888888777776 67777777777776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1e-13  Score=121.77  Aligned_cols=103  Identities=21%  Similarity=0.180  Sum_probs=44.4

Q ss_pred             EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049           65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL  144 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  144 (517)
                      .+++++|.++ .+|.  .+.  ++|++|+|++|.+++. .|..+..+. +|++|+|++|++.+..+..|.++++|++|+|
T Consensus        16 ~l~~~~n~l~-~iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             EEECCSSCCS-SCCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EEEeCCCCCC-ccCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            4555555553 2222  221  4455555555555441 122222333 4444444444443333333444444444444


Q ss_pred             cCCcccccccccccCCccccEEEccccccc
Q 036049          145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFS  174 (517)
Q Consensus       145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~  174 (517)
                      ++|+|++..+..|..+++|++|+|++|.+.
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            444444333333444444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=1.1e-13  Score=121.59  Aligned_cols=107  Identities=22%  Similarity=0.268  Sum_probs=73.3

Q ss_pred             hhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCC
Q 036049          329 AGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN  408 (517)
Q Consensus       329 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  408 (517)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45667777775 4555443  67777777777777666777777777777777777777555555667777777777777


Q ss_pred             cccccCCC-CCcCCccCCCcccCCCCCCCCC
Q 036049          409 YLTGLIPQ-GKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       409 ~l~~~~p~-~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      +|++.++. ...+..+..+++.+||+.|+|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            77766554 3456667777777777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=1.6e-12  Score=129.73  Aligned_cols=241  Identities=11%  Similarity=0.058  Sum_probs=168.9

Q ss_pred             cCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccc
Q 036049          113 CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM  192 (517)
Q Consensus       113 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  192 (517)
                      ..++.+.+.++ +...-...|.++ +|+.+.+..+ ++.....+|.+. +|+.+.+.+ .++...+.+|.++++|+.+++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            37788887654 445556678875 7999999876 776777788884 799999986 677677788999999999999


Q ss_pred             ccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChh
Q 036049          193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK  272 (517)
Q Consensus       193 ~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  272 (517)
                      ..|.++       .++...+.  +.+|+.+.+..+ ++.+...            +|.++++|+.+++..| ++ .++..
T Consensus       188 ~~n~l~-------~I~~~aF~--~~~L~~l~lp~~-l~~I~~~------------aF~~~~~L~~l~l~~~-l~-~I~~~  243 (401)
T 4fdw_A          188 SKTKIT-------KLPASTFV--YAGIEEVLLPVT-LKEIGSQ------------AFLKTSQLKTIEIPEN-VS-TIGQE  243 (401)
T ss_dssp             TTSCCS-------EECTTTTT--TCCCSEEECCTT-CCEECTT------------TTTTCTTCCCEECCTT-CC-EECTT
T ss_pred             CCCcce-------EechhhEe--ecccCEEEeCCc-hheehhh------------HhhCCCCCCEEecCCC-cc-Ccccc
Confidence            999887       77777777  789999999854 6655433            5678889999999875 54 67777


Q ss_pred             hhhcccccceeccCc-ccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCc-----ccCcccc
Q 036049          273 SFLCWNAMKIVNASE-LRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFD-----GAIPASI  346 (517)
Q Consensus       273 ~~~~l~~L~~L~l~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~  346 (517)
                      .|.. ..|+.+.+.. +..+                          ....+....+|+.+++.+|.+.     ...+..|
T Consensus       244 aF~~-~~L~~i~lp~~i~~I--------------------------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF  296 (401)
T 4fdw_A          244 AFRE-SGITTVKLPNGVTNI--------------------------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL  296 (401)
T ss_dssp             TTTT-CCCSEEEEETTCCEE--------------------------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred             cccc-CCccEEEeCCCccEE--------------------------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence            7776 5666666533 1111                          1112222456667777666554     3445567


Q ss_pred             cCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccc
Q 036049          347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG  412 (517)
Q Consensus       347 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  412 (517)
                      .++++|+.++|.+ .++.....+|.++++|+.++|..| ++..-...|.++ +|+.+++++|.+..
T Consensus       297 ~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          297 EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            7777788888773 466555667777778888887554 554556677777 78888887776553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=9.8e-13  Score=129.23  Aligned_cols=107  Identities=21%  Similarity=0.212  Sum_probs=88.0

Q ss_pred             hhhCCCC-CCcccCcccccCCCCCCeEeCcC-ccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049          330 GIILSNK-SFDGAIPASISNLKGLQVLNLHN-NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD  407 (517)
Q Consensus       330 ~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  407 (517)
                      .++++++ .++ .+|. +..+++|+.|+|++ |+|++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4567777 777 4777 88888899999986 899877778888999999999999999988888888899999999999


Q ss_pred             CcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049          408 NYLTGLIPQGKQFATFDNTSFDGNSGLCGKP  438 (517)
Q Consensus       408 N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~  438 (517)
                      |+|++.+|.......+..+++.+|++.|+|.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            9998877765444448888889999999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=6.2e-14  Score=138.59  Aligned_cols=164  Identities=16%  Similarity=0.162  Sum_probs=93.7

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccc-----cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccC--
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLY-----KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSI--  133 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--  133 (517)
                      ..++.|+|++|.++.....  .+.     ..++|++|+|++|.++.. ....+....++|++|+|++|.+.......+  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCT--VVAAVLGSGRHALDEVNLASCQLDPA-GLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHH--HHHHHHSSCSSCEEEEECTTCCCCHH-HHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHH--HHHHHHhhCCCCceEEEecCCCCCHH-HHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            3577777777777543221  222     225777777777777542 122333322377777777777754332232  


Q ss_pred             ---CCCCCCcEEEccCCccccc----ccccccCCccccEEEccccccccc----CchhhhcCCcccccccccccCcceec
Q 036049          134 ---GNFTRLQFLYLGFNNFSGD----LLGSIGNLRSLEAIYMSKCNFSGQ----ITSSLRNLTELVVLDMAQNSYGGTME  202 (517)
Q Consensus       134 ---~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~N~l~~~~~  202 (517)
                         ...++|++|+|++|.++..    ++..+..+++|++|+|++|.++..    ++..+...++|++|++++|.++... 
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-  227 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-  227 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-
Confidence               2456777777777777642    333445667777777777777632    2445556667777777777665210 


Q ss_pred             cccccccccccccCCCCCeEeccCCcccc
Q 036049          203 IEGKVHKWLLDPNMQNLNALNLSHNLLTG  231 (517)
Q Consensus       203 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  231 (517)
                       ...+...+..  .++|++|+|++|.|+.
T Consensus       228 -~~~l~~~L~~--~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          228 -ALALARAARE--HPSLELLHLYFNELSS  253 (372)
T ss_dssp             -HHHHHHHHHH--CSSCCEEECTTSSCCH
T ss_pred             -HHHHHHHHHh--CCCCCEEeccCCCCCH
Confidence             0012222222  5667777777776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.31  E-value=9.4e-11  Score=117.13  Aligned_cols=297  Identities=11%  Similarity=0.041  Sum_probs=146.7

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .+++++.|..+ ++..-..  +|.++++|+.+++..+ ++.  +....+....+|+.+.+..+ +.......|.++..++
T Consensus        71 ~~L~~i~lp~~-i~~I~~~--aF~~c~~L~~i~lp~~-l~~--I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           71 RKVTEIKIPST-VREIGEF--AFENCSKLEIINIPDS-VKM--IGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTEEEEECCTT-CCEECTT--TTTTCTTCCEECCCTT-CCE--ECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred             CCceEEEeCCC-ccCcchh--HhhCCCCCcEEEeCCC-ceE--ccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence            35666666533 4433333  6667777777777544 332  33333333225555554433 2122223343333222


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      ......  +......+|.++++|+.+.+.++. .......|.++.+|+.+.+..+ ++       .++...+. .+..|+
T Consensus       144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-------~I~~~~F~-~~~~L~  211 (394)
T 4fs7_A          144 ITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-------IIRDYCFA-ECILLE  211 (394)
T ss_dssp             EECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-------EECTTTTT-TCTTCC
T ss_pred             cccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-------EeCchhhc-cccccc
Confidence            222111  111234456677777777776543 2244556667777777776654 22       22222222 155555


Q ss_pred             eEeccCCcccccCCCCC-------CCCCCC--CCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccc
Q 036049          221 ALNLSHNLLTGFDQHLV-------LLPGNN--EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL  291 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~-------ll~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l  291 (517)
                      .+.+..+...-......       .+|...  .....+..+.+|+.+.+..+..  .+....|.....++.+......  
T Consensus       212 ~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~--  287 (394)
T 4fs7_A          212 NMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVI--  287 (394)
T ss_dssp             BCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSE--
T ss_pred             eeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCcee--
Confidence            55554432211000000       000000  0001223344444444443322  2222333333333332221100  


Q ss_pred             ccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhcc
Q 036049          292 QDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLG  371 (517)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  371 (517)
                                               ...........|+.+.+.++ ++..-..+|.++.+|+.++|..+ ++.....+|.
T Consensus       288 -------------------------i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  340 (394)
T 4fs7_A          288 -------------------------VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR  340 (394)
T ss_dssp             -------------------------ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred             -------------------------eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence                                     01111222455666666544 44445567888889999998754 6655567888


Q ss_pred             CCCCCCeeeCCCCcccccCccccccCCCCCEEeccCC
Q 036049          372 NLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN  408 (517)
Q Consensus       372 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  408 (517)
                      ++++|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus       341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            8999999999877 66566678888899999888654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.26  E-value=9e-12  Score=122.32  Aligned_cols=88  Identities=19%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             cccCCCCCEEEcCC-CCCCCCCCchh-hhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCC
Q 036049           83 LYKLVHLEWLNLAL-NDFNSSEIQPE-IINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL  160 (517)
Q Consensus        83 l~~l~~L~~L~Ls~-n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l  160 (517)
                      +..+++|++|+|++ |.++.  +++. +..+. +|++|+|++|.|.+..|..|.++++|++|+|++|+|++..+..|..+
T Consensus        27 l~~~~~L~~L~l~~~n~l~~--~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  103 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQH--LELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL  103 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCE--ECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred             CCCCCCeeEEEccCCCCCCC--cChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC
Confidence            56667777777774 77765  4433 33444 77777777777766666667777777777777777775544455554


Q ss_pred             ccccEEEccccccc
Q 036049          161 RSLEAIYMSKCNFS  174 (517)
Q Consensus       161 ~~L~~L~L~~n~l~  174 (517)
                      + |++|+|.+|.+.
T Consensus       104 ~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          104 S-LQELVLSGNPLH  116 (347)
T ss_dssp             C-CCEEECCSSCCC
T ss_pred             C-ceEEEeeCCCcc
Confidence            4 777777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=1.5e-13  Score=135.91  Aligned_cols=169  Identities=17%  Similarity=0.161  Sum_probs=119.1

Q ss_pred             CCCCCEEEcCCCCCCCCCCchhhhhc----ccCCcEEEccCCCCcccCCccC-CCCCCCcEEEccCCcccccccccc---
Q 036049           86 LVHLEWLNLALNDFNSSEIQPEIINL----SCSLKLLDLRSCGFWGKVPHSI-GNFTRLQFLYLGFNNFSGDLLGSI---  157 (517)
Q Consensus        86 l~~L~~L~Ls~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~i~~~~p~~~---  157 (517)
                      +++|++|+|++|.++.. ....+...    .++|++|+|++|.+.......+ ..+++|++|+|++|.++......+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            46899999999999753 22233333    1389999999999854333333 346789999999999986555554   


Q ss_pred             --cCCccccEEEcccccccc----cCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccc
Q 036049          158 --GNLRSLEAIYMSKCNFSG----QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTG  231 (517)
Q Consensus       158 --~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  231 (517)
                        ...++|++|+|++|.++.    .++..+..+++|++|+|++|.+++..  ...+...+..  .++|++|+|++|.|+.
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g--~~~L~~~L~~--~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG--LELLAAQLDR--NRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH--HHHHHHHGGG--CSCCCEEECCSSCCCH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH--HHHHHHHHhc--CCCcCeEECCCCCCCH
Confidence              346889999999999974    24455678999999999999987311  0123444444  7899999999999975


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC
Q 036049          232 FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG  267 (517)
Q Consensus       232 ~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  267 (517)
                      .....        ....+...++|++|+|++|.|+.
T Consensus       226 ~g~~~--------l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          226 TAALA--------LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHH--------HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHH--------HHHHHHhCCCCCEEeccCCCCCH
Confidence            32110        00112346789999999999873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.02  E-value=5.5e-09  Score=104.24  Aligned_cols=285  Identities=11%  Similarity=0.038  Sum_probs=167.0

Q ss_pred             ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049           82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR  161 (517)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~  161 (517)
                      +|.++.+|+.+.+..+ ++.  +....|...++|+.+++..+ +...-...|.++.+|+.+.+..+ +......+|..+.
T Consensus        66 AF~~c~~L~~i~lp~~-i~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VRE--IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCE--ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HhhCCCCceEEEeCCC-ccC--cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            8999999999999754 654  66665554349999999765 54555677999999999888755 4445667787776


Q ss_pred             cccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCC
Q 036049          162 SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG  241 (517)
Q Consensus       162 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~  241 (517)
                      .++.......  ......+|.++++|+.+.+..+. .       .++...+. .+.+|+.+++..+ ++.+...      
T Consensus       141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~-------~I~~~~F~-~c~~L~~i~l~~~-~~~I~~~------  202 (394)
T 4fs7_A          141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-E-------TLHNGLFS-GCGKLKSIKLPRN-LKIIRDY------  202 (394)
T ss_dssp             CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-C-------EECTTTTT-TCTTCCBCCCCTT-CCEECTT------
T ss_pred             ccccccCccc--cccchhhhcccCCCcEEecCCcc-c-------eecccccc-CCCCceEEEcCCC-ceEeCch------
Confidence            5544443332  22445789999999999997653 2       34444433 2889999999776 4433222      


Q ss_pred             CCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc-ccccccccCCCcccchhhhccceeeeec----C
Q 036049          242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE-LRYLQDVLSPSGKLLMTTYDYLLTMNIK----G  316 (517)
Q Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~  316 (517)
                            .|.++..|+.+.+..+...  +... +.....|+.+.+.. ...+.......       ...+....+.    .
T Consensus       203 ------~F~~~~~L~~i~~~~~~~~--i~~~-~~~~~~l~~i~ip~~~~~i~~~~f~~-------~~~l~~~~~~~~~~~  266 (394)
T 4fs7_A          203 ------CFAECILLENMEFPNSLYY--LGDF-ALSKTGVKNIIIPDSFTELGKSVFYG-------CTDLESISIQNNKLR  266 (394)
T ss_dssp             ------TTTTCTTCCBCCCCTTCCE--ECTT-TTTTCCCCEEEECTTCCEECSSTTTT-------CSSCCEEEECCTTCE
T ss_pred             ------hhccccccceeecCCCceE--eehh-hcccCCCceEEECCCceecccccccc-------cccceeEEcCCCcce
Confidence                  3455566666655544321  1111 11223333333321 01110000000       0000000000    0


Q ss_pred             ccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccccc
Q 036049          317 RMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE  396 (517)
Q Consensus       317 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  396 (517)
                      ...........++.+....+.+   ....|..+.+|+.+.+..+ ++.....+|.++++|+.++|.++ ++..-..+|.+
T Consensus       267 i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  341 (394)
T 4fs7_A          267 IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG  341 (394)
T ss_dssp             ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred             eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence            0011111123333333333322   2245777889999998765 55456677899999999999755 66556678899


Q ss_pred             CCCCCEEeccCCccc
Q 036049          397 LTFLAFFNVSDNYLT  411 (517)
Q Consensus       397 l~~L~~L~l~~N~l~  411 (517)
                      +.+|+.+++..| ++
T Consensus       342 c~~L~~i~lp~~-l~  355 (394)
T 4fs7_A          342 CTSLSNINFPLS-LR  355 (394)
T ss_dssp             CTTCCEECCCTT-CC
T ss_pred             CCCCCEEEECcc-cc
Confidence            999999998766 44

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.92  E-value=2.7e-08  Score=99.20  Aligned_cols=68  Identities=9%  Similarity=0.117  Sum_probs=43.6

Q ss_pred             cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcc
Q 036049          341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYL  410 (517)
Q Consensus       341 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  410 (517)
                      .....|.++.+|+.++|..+ ++.....+|.++++|+.+.|..+ ++..-...|.++++|+.+++.++..
T Consensus       302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            33455667777777777654 44344556777777777777544 4434455677777777777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=1e-09  Score=107.53  Aligned_cols=59  Identities=19%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             CCCCCeEeCcCcccccc----CChhccCCCCCCeeeCCCCcccccCcccccc-CCCCCEEeccCCc
Q 036049          349 LKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQQLVE-LTFLAFFNVSDNY  409 (517)
Q Consensus       349 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~l~~N~  409 (517)
                      +++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.|+......+.. +  ...+++++++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            45667777777666543    2333345566777777777666443333332 2  3445665554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.86  E-value=1.1e-07  Score=94.67  Aligned_cols=281  Identities=8%  Similarity=0.034  Sum_probs=131.6

Q ss_pred             ccccCC-CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC---CcccCCccCCCCCCCcEEEccCCcccccccccc
Q 036049           82 SLYKLV-HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG---FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSI  157 (517)
Q Consensus        82 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~  157 (517)
                      +|.+++ .|+.+.+..+ ++.  +....|....+|+.+.+..|.   +...-...|.++.+|+.+.+..+ ++.....+|
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~--Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTE--IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCE--ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeE--EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            566653 4777777543 433  444444332377777776553   43333456677777777666544 333445566


Q ss_pred             cCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCC
Q 036049          158 GNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV  237 (517)
Q Consensus       158 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  237 (517)
                      ..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++       .+....+.  ..+|+.+.+..+-.. ..    
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-------~I~~~aF~--~~~l~~i~ip~~~~~-i~----  197 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-------AIEERAFT--GTALTQIHIPAKVTR-IG----  197 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTT--TCCCSEEEECTTCCE-EC----
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-ee-------Eecccccc--ccceeEEEECCcccc-cc----
Confidence            77777777777544 33244556666677776666544 22       33333343  455666665443211 10    


Q ss_pred             CCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccC--cccccccccCCCcccchhhhccceeeeec
Q 036049          238 LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS--ELRYLQDVLSPSGKLLMTTYDYLLTMNIK  315 (517)
Q Consensus       238 ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                              ...+..+.++.......+... .+....+............  ........              .....+.
T Consensus       198 --------~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ip~~v~  254 (394)
T 4gt6_A          198 --------TNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAF--------------KIPNGVA  254 (394)
T ss_dssp             --------TTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEE--------------ECCTTEE
T ss_pred             --------cchhhhccccceecccccccc-cccceeecccccccccccccccccccceE--------------EcCCcce
Confidence                    112344455555554443332 1111111000000000000  00000000              0000000


Q ss_pred             CccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccc
Q 036049          316 GRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV  395 (517)
Q Consensus       316 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  395 (517)
                      ......+.....|+.+.+.++... .....|.++.+|+.+.+. +.++.....+|.++.+|+.++|..+ ++..-...|.
T Consensus       255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             EcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            000111112334444554433222 333456666777777775 3444344556777777777777654 4434455677


Q ss_pred             cCCCCCEEeccCC
Q 036049          396 ELTFLAFFNVSDN  408 (517)
Q Consensus       396 ~l~~L~~L~l~~N  408 (517)
                      ++.+|+.+.+..+
T Consensus       332 ~C~~L~~i~ip~s  344 (394)
T 4gt6_A          332 GCEQLERIAIPSS  344 (394)
T ss_dssp             TCTTCCEEEECTT
T ss_pred             CCCCCCEEEECcc
Confidence            7777777777543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=3.9e-09  Score=103.28  Aligned_cols=66  Identities=21%  Similarity=0.353  Sum_probs=52.2

Q ss_pred             CCCCCCeEeCcCccccccCChhcc---CCCCCCeeeCCCCccccc----CccccccCCCCCEEeccCCccccc
Q 036049          348 NLKGLQVLNLHNNNLQGHIPSCLG---NLTNLESLDLSNNKFSGR----IPQQLVELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       348 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~~~  413 (517)
                      .+++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.|+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            478999999999998754444333   578999999999999864    344556779999999999988743

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.77  E-value=6.3e-10  Score=103.39  Aligned_cols=62  Identities=21%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             CCCCCcEEEccCCcccc--cccccccCCccccEEEcccccccccCchhhhcCC--cccccccccccCc
Q 036049          135 NFTRLQFLYLGFNNFSG--DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLT--ELVVLDMAQNSYG  198 (517)
Q Consensus       135 ~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~l~~N~l~  198 (517)
                      ++++|+.|+|++|+|++  .+|..+..+++|++|+|++|.|++.  ..+..++  +|++|+|++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence            34555555555555554  2334445555555666655555532  2233333  5556666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.64  E-value=1.8e-06  Score=85.30  Aligned_cols=291  Identities=10%  Similarity=0.006  Sum_probs=161.3

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .+|+.+.+.. .++..-..  +|.++.+|+.++|..+ ++.  +....+... +|+.+.+..+ +...-...|... +|+
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~--aF~~C~~L~~I~lp~~-v~~--Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~  116 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEA--NFNSCYNMTKVTVAST-VTS--IGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD  116 (379)
T ss_dssp             GGCSEEEECT-TEEEECTT--TTTTCTTCCEEEECTT-CCE--ECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred             cCCEEEEeCC-CccChHHH--HhhCCCCCCEEEeCCc-ceE--echhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence            3577777764 45544444  8999999999999754 544  666666666 7888887654 433344456554 799


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceec------cccccccccccc
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTME------IEGKVHKWLLDP  214 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~~~~~  214 (517)
                      .+.+..+- .......|... +|+.+.+..+ ++......|.....++.+.+..+.......      ........+.. 
T Consensus       117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (379)
T 4h09_A          117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA-  192 (379)
T ss_dssp             EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT-
T ss_pred             cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc-
Confidence            99987653 32444455554 5666655443 333445667777777777665543221100      00001111111 


Q ss_pred             cCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc-cccccc
Q 036049          215 NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE-LRYLQD  293 (517)
Q Consensus       215 ~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~-~~~l~~  293 (517)
                       ...+..+.+....-.-             ....+....+|+.+.+..+ +. .+....|..+..|+.+.+.. +..+..
T Consensus       193 -~~~~~~~~~~~~~~~i-------------~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~v~~I~~  256 (379)
T 4h09_A          193 -AKTGTEFTIPSTVKTV-------------TAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKNVTSIGS  256 (379)
T ss_dssp             -TCCCSEEECCTTCCEE-------------CTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTTCCEECT
T ss_pred             -cccccccccccceeEE-------------eecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCCccEeCc
Confidence             3344444333221110             0112344556666666543 22 44445555566665555432 111110


Q ss_pred             ccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCC
Q 036049          294 VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL  373 (517)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  373 (517)
                                                ........++.+.+..+ +.......|.++.+|+.+++.++.++.....+|.++
T Consensus       257 --------------------------~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c  309 (379)
T 4h09_A          257 --------------------------FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC  309 (379)
T ss_dssp             --------------------------TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred             --------------------------cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCC
Confidence                                      01111223444444322 333334567778888888888887775666778888


Q ss_pred             CCCCeeeCCCCcccccCccccccCCCCCEEeccCC
Q 036049          374 TNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN  408 (517)
Q Consensus       374 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  408 (517)
                      .+|+.+.|..+ ++..-..+|.++.+|+.+.+..+
T Consensus       310 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          310 VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            88888888755 55455567888888887776543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=1.5e-08  Score=89.52  Aligned_cols=18  Identities=22%  Similarity=0.030  Sum_probs=9.5

Q ss_pred             cccCCCCCEEEcCCC-CCC
Q 036049           83 LYKLVHLEWLNLALN-DFN  100 (517)
Q Consensus        83 l~~l~~L~~L~Ls~n-~l~  100 (517)
                      +...+.|++|+|++| .+.
T Consensus        32 l~~~~~L~~L~L~~n~~i~   50 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIP   50 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCC
T ss_pred             HhcCCCCCEEEecCCCCCC
Confidence            344555555555555 543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=2.1e-08  Score=88.54  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=54.2

Q ss_pred             CCcEEEccCC-CCccc----CCccCCCCCCCcEEEccCCccccc----ccccccCCccccEEEccccccccc----Cchh
Q 036049          114 SLKLLDLRSC-GFWGK----VPHSIGNFTRLQFLYLGFNNFSGD----LLGSIGNLRSLEAIYMSKCNFSGQ----ITSS  180 (517)
Q Consensus       114 ~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~  180 (517)
                      .|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+...++|++|+|++|.|...    +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            7888888887 76432    334456667788888888877643    233344556777777777777632    3344


Q ss_pred             hhcCCccccccc--ccccCc
Q 036049          181 LRNLTELVVLDM--AQNSYG  198 (517)
Q Consensus       181 l~~l~~L~~L~l--~~N~l~  198 (517)
                      +...++|++|++  ++|.++
T Consensus       117 L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCC
T ss_pred             HHhCCCceEEEecCCCCCCC
Confidence            555666777777  666665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.49  E-value=7.6e-06  Score=80.85  Aligned_cols=275  Identities=11%  Similarity=0.038  Sum_probs=166.9

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .+|+.++|..+ ++..-..  +|.++ +|+.+.+..+ ++.  +....+... +|+.+.+..+-. ..-...|.+. +|+
T Consensus        69 ~~L~~I~lp~~-v~~Ig~~--aF~~c-~l~~i~~~~~-l~~--I~~~aF~~~-~L~~i~lp~~~~-~i~~~~F~~~-~l~  138 (379)
T 4h09_A           69 YNMTKVTVAST-VTSIGDG--AFADT-KLQSYTGMER-VKK--FGDYVFQGT-DLDDFEFPGATT-EIGNYIFYNS-SVK  138 (379)
T ss_dssp             TTCCEEEECTT-CCEECTT--TTTTC-CCCEEEECTT-CCE--ECTTTTTTC-CCSEEECCTTCC-EECTTTTTTC-CCC
T ss_pred             CCCCEEEeCCc-ceEechh--hhcCC-CCceEECCce-eeE--eccceeccC-CcccccCCCccc-cccccccccc-eee
Confidence            57889999754 5544444  78877 6888887654 443  566667666 899999986532 3334455554 566


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccC------------chhhhcCCcccccccccccCcceeccccccc
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI------------TSSLRNLTELVVLDMAQNSYGGTMEIEGKVH  208 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~------------p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  208 (517)
                      .+.+..+ ++......|..+..++.+.+..+......            ...+.....+..+.+....-.       ...
T Consensus       139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~  210 (379)
T 4h09_A          139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-------VTA  210 (379)
T ss_dssp             EEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-------ECT
T ss_pred             eeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-------Eee
Confidence            6666543 44355667788888888877665433111            111222223333322221100       111


Q ss_pred             cccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc-
Q 036049          209 KWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE-  287 (517)
Q Consensus       209 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~-  287 (517)
                      ..+..  +.+|+.+.+..+ ++.+..            ..+.++.+|+.+.+..+ ++ .+....|..+..|+.+.+.. 
T Consensus       211 ~~f~~--~~~l~~i~~~~~-~~~i~~------------~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~  273 (379)
T 4h09_A          211 YGFSY--GKNLKKITITSG-VTTLGD------------GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK  273 (379)
T ss_dssp             TTTTT--CSSCSEEECCTT-CCEECT------------TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC
T ss_pred             ccccc--ccccceeeeccc-eeEEcc------------ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc
Confidence            11222  567777777544 222211            13466778888888765 44 56666777777777766543 


Q ss_pred             ccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCC
Q 036049          288 LRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIP  367 (517)
Q Consensus       288 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  367 (517)
                      +..+                          ....+....+|+.+.+.++.++..-...|.++.+|+.++|..+ ++....
T Consensus       274 i~~i--------------------------~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~  326 (379)
T 4h09_A          274 VKTV--------------------------PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV  326 (379)
T ss_dssp             CSEE--------------------------CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             ceec--------------------------cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH
Confidence            1111                          1111223567788888888887666778999999999999765 665667


Q ss_pred             hhccCCCCCCeeeCCCCcccccCccccccCC
Q 036049          368 SCLGNLTNLESLDLSNNKFSGRIPQQLVELT  398 (517)
Q Consensus       368 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  398 (517)
                      .+|.++++|+.+.+..+ ++..-..+|.+..
T Consensus       327 ~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          327 YAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             HHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            78999999999999765 5544455665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=2.2e-07  Score=86.30  Aligned_cols=89  Identities=24%  Similarity=0.246  Sum_probs=65.5

Q ss_pred             hhhhh--hhCCCCCCc---ccCcccccCCCCCCeEeCcCccccc--cCChhccCCCCCCeeeCCCCcccccCccccccCC
Q 036049          326 DILAG--IILSNKSFD---GAIPASISNLKGLQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT  398 (517)
Q Consensus       326 ~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  398 (517)
                      +.|..  ++++.|...   ..++....++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~  218 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK  218 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence            34444  666777433   1222223568899999999999986  4557778899999999999999865  3344444


Q ss_pred             --CCCEEeccCCcccccCCC
Q 036049          399 --FLAFFNVSDNYLTGLIPQ  416 (517)
Q Consensus       399 --~L~~L~l~~N~l~~~~p~  416 (517)
                        +|++|++++|++++.+|.
T Consensus       219 ~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          219 GLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TSCCSEEECTTSTTGGGCSS
T ss_pred             cCCcceEEccCCcCccccCc
Confidence              899999999999987774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=6.1e-07  Score=77.25  Aligned_cols=82  Identities=11%  Similarity=0.154  Sum_probs=43.8

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCc-ccccccccccCC----ccccEEEccccc-ccccCchhhhcCCcc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN-FSGDLLGSIGNL----RSLEAIYMSKCN-FSGQITSSLRNLTEL  187 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L  187 (517)
                      .|++||+++|.++..--..+.++++|++|+|++|. |++..-..++.+    ++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555544333345556666666666663 554434444443    356666666653 553333344555556


Q ss_pred             cccccccc
Q 036049          188 VVLDMAQN  195 (517)
Q Consensus       188 ~~L~l~~N  195 (517)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            66665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=1.1e-06  Score=75.70  Aligned_cols=84  Identities=11%  Similarity=0.087  Sum_probs=68.8

Q ss_pred             hhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcc-ccccCChhccCC----CCCCeeeCCCCc-ccccCccccccCCC
Q 036049          326 DILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNN-LQGHIPSCLGNL----TNLESLDLSNNK-FSGRIPQQLVELTF  399 (517)
Q Consensus       326 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~  399 (517)
                      ..|+.||++++.++..--..+..+++|++|+|++|. +++.--..+..+    ++|++|+|++|. |++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            358999999999987766678899999999999994 776555556664    479999999984 88765566788999


Q ss_pred             CCEEeccCCc
Q 036049          400 LAFFNVSDNY  409 (517)
Q Consensus       400 L~~L~l~~N~  409 (517)
                      |++|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.44  E-value=3.7e-05  Score=67.44  Aligned_cols=15  Identities=13%  Similarity=0.014  Sum_probs=7.6

Q ss_pred             cCCCCCEEEcCCC-CC
Q 036049           85 KLVHLEWLNLALN-DF   99 (517)
Q Consensus        85 ~l~~L~~L~Ls~n-~l   99 (517)
                      +-+.|++|+|++| .|
T Consensus        39 ~n~~L~~L~L~~nn~i   54 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRV   54 (197)
T ss_dssp             TCSSCCEEECTTCCSS
T ss_pred             cCCCccEEECCCCCCC
Confidence            3445555555553 44

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.33  E-value=5.7e-05  Score=66.21  Aligned_cols=16  Identities=25%  Similarity=0.270  Sum_probs=7.4

Q ss_pred             ccCCCCCEEEcCCCCC
Q 036049           84 YKLVHLEWLNLALNDF   99 (517)
Q Consensus        84 ~~l~~L~~L~Ls~n~l   99 (517)
                      ..-+.|+.|+|++|.|
T Consensus        67 ~~N~~L~~L~L~~n~i   82 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAI   82 (197)
T ss_dssp             TTCSCCCEEECTTSCC
T ss_pred             hhCCCcCEEEccCCCC
Confidence            3344444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.06  E-value=0.00087  Score=54.74  Aligned_cols=56  Identities=18%  Similarity=0.255  Sum_probs=33.3

Q ss_pred             eEeCcCcccc-ccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049          354 VLNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       354 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  411 (517)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665 24454332  35677777777776555555666666666665555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.89  E-value=0.0017  Score=52.95  Aligned_cols=55  Identities=20%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             EEEccCCCCc-ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccc
Q 036049          117 LLDLRSCGFW-GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNF  173 (517)
Q Consensus       117 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l  173 (517)
                      .++.++++++ ..+|..+.  .+|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555542 14443322  2455555555555544444455555555555555544

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=85.53  E-value=0.49  Score=29.66  Aligned_cols=14  Identities=36%  Similarity=0.434  Sum_probs=6.1

Q ss_pred             hhhhhhhhHHHHHH
Q 036049          471 IILIGYAGGLVAGL  484 (517)
Q Consensus       471 ~~~~~~~~~~~~~~  484 (517)
                      .|+.++++++++++
T Consensus        12 ~IA~gVVgGv~~~~   25 (44)
T 2ks1_B           12 SIATGMVGALLLLL   25 (44)
T ss_dssp             SSTHHHHHHHHHHH
T ss_pred             eEEeehhHHHHHHH
Confidence            44444444444333

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=83.07  E-value=2.3  Score=30.57  Aligned_cols=8  Identities=25%  Similarity=0.650  Sum_probs=3.0

Q ss_pred             hhhhhhhH
Q 036049          472 ILIGYAGG  479 (517)
Q Consensus       472 ~~~~~~~~  479 (517)
                      ++.+++++
T Consensus        13 Iv~gvi~g   20 (79)
T 2knc_B           13 VLLSVMGA   20 (79)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            33333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	517
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 4e-19
 Identities = 63/302 (20%), Positives = 102/302 (33%), Gaps = 43/302 (14%)

Query: 4   LCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCC--SWDGVHCNKNTG 61
           LC+  ++ ALLQ K+                T++SW P     DCC  +W GV C+ +T 
Sbjct: 2   LCNPQDKQALLQIKKD----------LGNPTTLSSWLP---TTDCCNRTWLGVLCDTDTQ 48

Query: 62  --HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLS------- 112
              V  L+LS   L       SSL  L +L +L +   +     I P I  L+       
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 113 ----------------CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGS 156
                            +L  LD       G +P SI +   L  +    N  SG +  S
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 157 IGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNM 216
            G+   L        N              L  +D+++N   G   +     K     ++
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 217 QNLNALNLSHNLLTGFDQHLVLLPGNN---EEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273
              +       +    + + + L  N      P+       L  +++S N   G++P   
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 274 FL 275
            L
Sbjct: 289 NL 290

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.6 bits (192), Expect = 1e-16
 Identities = 63/314 (20%), Positives = 97/314 (30%), Gaps = 49/314 (15%)

Query: 131 HSIGNFTRLQFLYLGFNNFSGD--LLGSIGNLRSLEAIYMSKC-NFSGQITSSLRNLTEL 187
            +     R+  L L   N      +  S+ NL  L  +Y+    N  G I  ++  LT+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 188 VVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR 247
             L +   +  G +       K L+  +                          +   P 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA--------------------LSGTLPP 143

Query: 248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYD 307
           +      L  I    NR +G +P            +  S  R    +  P     +    
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLNLAF 201

Query: 308 YLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIP 367
             L+ N+     +     D     I   K+        +   K L  L+L NN + G +P
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 368 SCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTS 427
             L  L  L SL++S N                         L G IPQG     FD ++
Sbjct: 262 QGLTQLKFLHSLNVSFNN------------------------LCGEIPQGGNLQRFDVSA 297

Query: 428 FDGNSGLCGKPLSK 441
           +  N  LCG PL  
Sbjct: 298 YANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 119 DLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNF 173
           DLR+   +G +P  +     L  L + FNN  G  +   GNL+  +    +    
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 123 CGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLR 182
                     +G    L  L L  N   G L   +  L+ L ++ +S  N  G+I     
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGG 288

Query: 183 NLTELVVLDMAQN 195
           NL    V   A N
Sbjct: 289 NLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 15/209 (7%)

Query: 25  FYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLY 84
                 D    + +    + + +  S        +  ++V +    + + G+I  S    
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-- 170

Query: 85  KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144
                  L  ++    +          +         S          +    +      
Sbjct: 171 ---SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIE 204
              N     LG +G  ++L  + +      G +   L  L  L  L+++ N+  G +   
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 205 GKVHKWLLDPNMQNLNALNLSHN-LLTGF 232
           G         N+Q  +    ++N  L G 
Sbjct: 288 G---------NLQRFDVSAYANNKCLCGS 307

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 61/359 (16%), Positives = 105/359 (29%), Gaps = 30/359 (8%)

Query: 61  GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINL--------- 111
             V  L          I S   +  L +L  +N + N          +  L         
Sbjct: 44  DQVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 99

Query: 112 --SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
               +         G                   L     S + +  I  L  L ++   
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLL 229
                      L NLT L  LD++ N       +    +   L      ++  +++   +
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS--DITPLGI 217

Query: 230 TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR 289
                 L L     ++  T    + L  +DL++N+ +   P          K+       
Sbjct: 218 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGA 272

Query: 290 YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNL 349
                +SP   L   T         +   ++       L  + L   +     P  +S+L
Sbjct: 273 NQISNISPLAGLTALTNLE--LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328

Query: 350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN 408
             LQ L   NN +     S L NLTN+  L   +N+ S   P  L  LT +    ++D 
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 45/311 (14%), Positives = 91/311 (29%), Gaps = 46/311 (14%)

Query: 132 SIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLD 191
           S  +  ++  L           +  +  L +L  I  S    +    + L+NLT+LV + 
Sbjct: 39  SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDIL 94

Query: 192 MAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCG 251
           M  N       +    +   L      +  ++   NL       L     ++    +G  
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 252 FSKLRIIDLSDNRFTG----KLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYD 307
             +                     +  +  N +  ++        + L  +   +     
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 308 YLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIP 367
             +  N+    +  N++ DI                 ++++L  L  L+L NN +    P
Sbjct: 215 LGILTNLDELSLNGNQLKDI----------------GTLASLTNLTDLDLANNQISNLAP 258

Query: 368 SCLGNLTNLESLDLSNNKFSGRIP--------------------QQLVELTFLAFFNVSD 407
             L  LT L  L L  N+ S   P                      +  L  L +  +  
Sbjct: 259 --LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 408 NYLTGLIPQGK 418
           N ++ + P   
Sbjct: 317 NNISDISPVSS 327

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP- 391
           L   +    +  S ++L  +  L      ++      +  L NL  ++ SNN+ +   P 
Sbjct: 29  LGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPL 84

Query: 392 QQLVELTFL 400
           + L +L  +
Sbjct: 85  KNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 44/258 (17%), Positives = 85/258 (32%), Gaps = 20/258 (7%)

Query: 159 NLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQ 217
            L       + K N +  ++ + L  +T L    +   S  G   +E           + 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG---VE----------YLN 66

Query: 218 NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCW 277
           NL  +N S+N LT       L      +               +    TG     + +  
Sbjct: 67  NLTQINFSNNQLTDITPLKNLT--KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 278 NAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKS 337
                   +  R      + S    ++    L  ++   ++     + ++     L   S
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 338 FDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVEL 397
              +  + ++ L  L+ L   NN +    P     LTNL+ L L+ N+        L  L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASL 240

Query: 398 TFLAFFNVSDNYLTGLIP 415
           T L   ++++N ++ L P
Sbjct: 241 TNLTDLDLANNQISNLAP 258

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 45/284 (15%), Positives = 79/284 (27%), Gaps = 32/284 (11%)

Query: 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169
           +L     LLDL++            N   L  L L  N  S    G+   L  LE +Y+S
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLL 229
           K           + L EL V +        ++         +        ++   +    
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 230 TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR 289
                  + +   N           L  + L  N+ T    +      N  K+  +    
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF--- 204

Query: 290 YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNL 349
                                  +I             L  + L+N      +P  +++ 
Sbjct: 205 ----------------------NSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 241

Query: 350 KGLQVLNLHNNNLQG------HIPSCLGNLTNLESLDLSNNKFS 387
           K +QV+ LHNNN+          P       +   + L +N   
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 4e-11
 Identities = 59/309 (19%), Positives = 98/309 (31%), Gaps = 41/309 (13%)

Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
            C L+++     G   KVP  +        L L  N  +    G   NL++L  + +   
Sbjct: 9   QCHLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 172 NFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTG 231
             S     +   L +L  L +++N      E   K  + L     +         N L  
Sbjct: 66  KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 232 F---DQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASEL 288
               +     L  +  E     G  KL  I ++D   T  +P                 L
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP-----------PSL 173

Query: 289 RYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISN 348
             L                +L    I     A  K  + LA + LS  S       S++N
Sbjct: 174 TEL----------------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 349 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG------RIPQQLVELTFLAF 402
              L+ L+L+NN L   +P  L +   ++ + L NN  S         P    +    + 
Sbjct: 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 403 FNVSDNYLT 411
            ++  N + 
Sbjct: 277 VSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
            +P  +       +L+L NN +         NL NL +L L NNK S   P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 401 AFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLC 435
               +S N L  L  +  +         +  + + 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 37/229 (16%), Positives = 72/229 (31%), Gaps = 21/229 (9%)

Query: 217 QNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLC 276
            +   L+L +N +T              +         L  + L +N+ +   P  +F  
Sbjct: 31  PDTALLDLQNNKITEI------------KDGDFKNLKNLHTLILINNKISKISPG-AFAP 77

Query: 277 WNAMKIVNAS--ELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILS 334
              ++ +  S  +L+ L + +  + + L    + +  +           I   L    L 
Sbjct: 78  LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 335 NKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 394
                G    +   +K L  + + + N+   IP   G   +L  L L  NK +      L
Sbjct: 138 ---SSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASL 191

Query: 395 VELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGC 443
             L  LA   +S N ++ +                 N+ L   P     
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 23/117 (19%), Positives = 33/117 (28%)

Query: 324 IPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 383
           +P   A + L N            NLK L  L L NN +    P     L  LE L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 384 NKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLS 440
           N+      +    L  L         +   +  G           +       +  +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 7e-07
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 333 LSNKSF-DGAIPASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDLSNNKFS 387
           +  +   D      +  L+  QV+ L +  L       I S L     L  L+L +N+  
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 388 GRIPQQLVEL 397
                 +++ 
Sbjct: 69  DVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 6e-06
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 343 PASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE-- 396
                    L+VL L + ++       + + L    +L  LDLSNN        QLVE  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 397 ---LTFLAFFNVSDNYLTGLIPQ 416
                 L    + D Y +  +  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLG-----NLTNLESLDLSNNKFSGRIPQQLV 395
           ++ A++     L+ L+L NN L       L          LE L L +  +S  +  +L 
Sbjct: 388 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

Query: 396 EL 397
            L
Sbjct: 448 AL 449

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 13/223 (5%)

Query: 218 NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCW 277
               + L  N ++                 +      L I+ L  N       +      
Sbjct: 33  ASQRIFLHGNRISHV------------PAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 278 NAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKS 337
              ++  +   +      +    L      +L    ++       +    L  + L + +
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 338 FDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVEL 397
                  +  +L  L  L LH N +          L +L+ L L  N+ +   P    +L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 398 TFLAFFNVSDNYLTGLIPQGKQFATFDNT-SFDGNSGLCGKPL 439
             L    +  N L+ L  +             + N  +C    
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 43/284 (15%), Positives = 82/284 (28%), Gaps = 26/284 (9%)

Query: 129 VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV 188
           VP  I      Q ++L  N  S     S    R+L  +++     +    ++        
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG----- 78

Query: 189 VLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT 248
            L + +            V        +  L+ L+L    L                   
Sbjct: 79  -LALLEQLDLSDNAQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPG------------L 124

Query: 249 GCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDY 308
             G + L+ + L DN     LP  +F     +  +     R           L       
Sbjct: 125 FRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 309 LLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS 368
           L    +        +    L  + L   +       +++ L+ LQ L L++N       +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 369 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG 412
                  L+    S+++    +PQ+L          ++ N L G
Sbjct: 244 -RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 36/192 (18%), Positives = 59/192 (30%), Gaps = 17/192 (8%)

Query: 217 QNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLC 276
           ++   L+LS NLL  F               T   +++L  ++L                
Sbjct: 31  KDTTILHLSENLLYTFS------------LATLMPYTRLTQLNLDRAEL----TKLQVDG 74

Query: 277 WNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNK 336
              +          LQ +      L   T   +    +    +   +    L  + L   
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 337 SFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE 396
                 P  ++    L+ L+L NNNL       L  L NL++L L  N     IP+    
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193

Query: 397 LTFLAFFNVSDN 408
              L F  +  N
Sbjct: 194 SHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 345 SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN 404
            +S +     +N    NL   +P  L    +   L LS N         L+  T L   N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 405 VSDNY 409
           +    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386
           A+P  +   K   +L+L  N L     + L   T L  L+L   + 
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 29/230 (12%), Positives = 73/230 (31%), Gaps = 25/230 (10%)

Query: 183 NLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD-----QHLV 237
            L   + +   +++   T+             ++  +  L+     +T  +      +L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA----------DLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 238 LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSP 297
            L   + +         L  I   +          +     ++K ++ +  +        
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV---- 122

Query: 298 SGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNL 357
               L    +  +      ++   + +  +     LS  +   +    ++NL  L  L  
Sbjct: 123 --TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 358 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD 407
            +N +    P  L +L NL  + L NN+ S   P  L   + L    +++
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 11/78 (14%), Positives = 22/78 (28%)

Query: 308 YLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIP 367
           +L    I+           +    +  N + +           G  +L++    +     
Sbjct: 159 WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 218

Query: 368 SCLGNLTNLESLDLSNNK 385
             L NL  L +    N K
Sbjct: 219 YGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 45/320 (14%), Positives = 82/320 (25%), Gaps = 37/320 (11%)

Query: 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFS-------GDLLGSIGNLRSLEAI 166
           SLKL  + +      V   +     ++ + L  N           + + S  +L   E  
Sbjct: 9   SLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 167 YMSKCNFSGQITSSLRNLTELVV----LDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNAL 222
            +       +I  +LR L + ++    L   + S         +     L  +    +  
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 223 NLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS----------- 271
             ++ L       +          +       LR I    NR                  
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 272 ------KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIP 325
                                E       L        T      +          N   
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 326 DILAGIILSNKSFDG-AIPASISNLKGLQVLNLHNNNLQGHIPSCL-----GNLTNLESL 379
             L   +LS +         S     GLQ L L  N ++      L       + +L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 380 DLSNNKFS--GRIPQQLVEL 397
           +L+ N+FS    +  ++ E+
Sbjct: 308 ELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 10/90 (11%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR----IPQQLVELTFLAFFNV 405
           K L++  +   + +  + + L    +++ + LS N         + + +     L     
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 406 SDNYLTGLIPQGKQFATFDNTSFDGNSGLC 435
           SD +   +  +  +       +      L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF 403
           A  +N    + L+L    +   I +    L   +++D S+N+           L  L   
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 404 NVSDNYLTGLIPQGKQFATFDN 425
            V++N +  +     Q      
Sbjct: 69  LVNNNRICRIGEGLDQALPDLT 90

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 1/100 (1%)

Query: 342 IPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
               +   + L  L + N     H+    L  L  L +L +  +      P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 401 AFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLS 440
           +  N+S N L  L  +  Q  +       GN   C   L 
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 303 MTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNL 362
               +          + +   +P  L  + +SN      +PA    L   + L    N+L
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL 316

Query: 363 QGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 400
              +P    NL   + L +  N      P     +  L
Sbjct: 317 A-EVPELPQNL---KQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNY 409
           +    L L+N  L   +P    +L   ESL  S N  +  +P+       L    V +N 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPE---LPQSLKSLLVDNNN 89

Query: 410 LTGLIPQGKQFATFDN 425
           L  L            
Sbjct: 90  LKALSDLPPLLEYLGV 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 353 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 391
           +VL+L + +L   +   L  L  +  LDLS+N+     P
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP 37

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 66  LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125
           L+L+H      +     L +L+ +  L+L+ N      ++     L+    L  L++   
Sbjct: 3   LHLAHK----DLTVLCHLEQLLLVTHLDLSHN-----RLRALPPALAALRCLEVLQASDN 53

Query: 126 WGKVPHSIGNFTRLQFLYLGFNNF-SGDLLGSIGNLRSLEAIYMSKCNFSG------QIT 178
             +    + N  RLQ L L  N       +  + +   L  + +   +         ++ 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 179 SSLRNLTELV 188
             L +++ ++
Sbjct: 114 EMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 26/104 (25%)

Query: 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL---------------- 376
           L++K     +   +  L  +  L+L +N L+   P+ L  L  L                
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGV 61

Query: 377 ------ESLDLSNNKF-SGRIPQQLVELTFLAFFNVSDNYLTGL 413
                 + L L NN+       Q LV    L   N+  N L   
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 27/161 (16%), Positives = 46/161 (28%), Gaps = 44/161 (27%)

Query: 222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMK 281
           L+L+H  LT                        +  +DLS NR     P+ + L      
Sbjct: 3   LHLAHKDLTVLCHL--------------EQLLLVTHLDLSHNRLRALPPALAALRC---- 44

Query: 282 IVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGA 341
                              L +         N+ G          +L     +N+    A
Sbjct: 45  -------------------LEVLQASDNALENVDGVANLPRLQELLLC----NNRLQQSA 81

Query: 342 IPASISNLKGLQVLNLHNNNL---QGHIPSCLGNLTNLESL 379
               + +   L +LNL  N+L   +G        L ++ S+
Sbjct: 82  AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 353 QVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGR--IPQQLVEL 397
           Q L L NN LQ       L +   L  L+L  N       I ++L E+
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 341 AIPASISNLKGLQVLNLHNNNLQGH--IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT 398
            +     N+  L  LNL NN L     + S +    NL+ L+LS N+         ++  
Sbjct: 56  TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 115

Query: 399 FLAFFNVSDNYLTGLIPQGKQFATF 423
            L    +  N L+        + + 
Sbjct: 116 KLEELWLDGNSLSDTFRDQSTYISA 140

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 12/191 (6%)

Query: 256 RIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIK 315
             +D +      ++P    L    + + +    R   D L      L+        +   
Sbjct: 11  TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 316 GRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTN 375
                          +                 L  L+ LNL++N +   +P    +L +
Sbjct: 70  EPNAFEGASHIQELQLG--ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 376 LESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP---QGKQFATFDNTSFDGNS 432
           L SL+L++N F+           +L   +++        P   +  Q     ++ F    
Sbjct: 128 LTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK--- 183

Query: 433 GLCGKPLSKGC 443
             C    S+GC
Sbjct: 184 --CSSENSEGC 192

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 5/150 (3%)

Query: 25  FYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLY 84
                        +     G         +         +        +    +     +
Sbjct: 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 197

Query: 85  KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144
           +L +L+ L+L+       E   E+  +  +LK L +      G +         LQ   +
Sbjct: 198 QLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIVPDGTLQLLKEALPHLQ---I 253

Query: 145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFS 174
             ++F+     +IGN ++ E I+  KC  +
Sbjct: 254 NCSHFTTIARPTIGNKKNQE-IWGIKCRLT 282

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	517
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.15

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.9e-42  Score=335.15  Aligned_cols=304  Identities=35%  Similarity=0.550  Sum_probs=210.2

Q ss_pred             CCchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcc--cceeecCCCC--CcEEEEEcCCCCceee--e
Q 036049            4 LCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCS--WDGVHCNKNT--GHVVKLNLSHSCLFGS--I   77 (517)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~--w~gv~c~~~~--~~l~~L~Ls~n~l~~~--~   77 (517)
                      -|.++||+||++||+++.++.          ++++|..   ++|||.  |+||+|+...  .+|+.|+|+++++.+.  +
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~----------~l~sW~~---~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~l   68 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT----------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG----------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC----------cCCCCCC---CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCC
Confidence            499999999999999998654          6899986   679995  9999998643  3799999999988764  3


Q ss_pred             CCCcccccCCCCCEEEcCC-CCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccccccccc
Q 036049           78 NSSSSLYKLVHLEWLNLAL-NDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGS  156 (517)
Q Consensus        78 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~  156 (517)
                      |.  .++++++|++|+|++ |++++. +|+.+..+. +|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|..
T Consensus        69 p~--~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          69 PS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             CG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             Ch--HHhcCccccccccccccccccc-ccccccccc-ccchhhhccccccccccccccchhhhcccccccccccccCchh
Confidence            33  666666666666654 555443 555555554 5555555555555555555555555555555555555555555


Q ss_pred             ccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCC
Q 036049          157 IGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHL  236 (517)
Q Consensus       157 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  236 (517)
                      |+++++|+++++++|.+.+.+|..+..+..+                               ++.+++++|++++..+..
T Consensus       145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-------------------------------~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------------------------------FTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTT-------------------------------CCEEECCSSEEEEECCGG
T ss_pred             hccCcccceeecccccccccccccccccccc-------------------------------cccccccccccccccccc
Confidence            5555555555555555554444444333222                               245555555555432221


Q ss_pred             CCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecC
Q 036049          237 VLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKG  316 (517)
Q Consensus       237 ~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  316 (517)
                                  +..+ ....++++++                                                     
T Consensus       194 ------------~~~l-~~~~l~l~~~-----------------------------------------------------  207 (313)
T d1ogqa_         194 ------------FANL-NLAFVDLSRN-----------------------------------------------------  207 (313)
T ss_dssp             ------------GGGC-CCSEEECCSS-----------------------------------------------------
T ss_pred             ------------cccc-cccccccccc-----------------------------------------------------
Confidence                        1111 1223444433                                                     


Q ss_pred             ccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccccc
Q 036049          317 RMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE  396 (517)
Q Consensus       317 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  396 (517)
                                          .+.+.+|..+..+++|+.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..|..
T Consensus       208 --------------------~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~  266 (313)
T d1ogqa_         208 --------------------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             --------------------EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             --------------------ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhC
Confidence                                3334555566778899999999999986655 5888999999999999999999999999


Q ss_pred             CCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCCCCCCC
Q 036049          397 LTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGC  443 (517)
Q Consensus       397 l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~~~~~c  443 (517)
                      +++|++|+|++|+|+|.+|+...+..++.+++.||+.+||.|+. .|
T Consensus       267 L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999999999999999998888899999999999999998763 45

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=5e-26  Score=225.31  Aligned_cols=299  Identities=23%  Similarity=0.248  Sum_probs=195.9

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .++++|++++++|+..  +  .+..+++|++|++++|++++  +++ +..+. +|++|++++|.+.+. + .++.+++|+
T Consensus        44 ~~l~~L~l~~~~I~~l--~--gl~~L~nL~~L~Ls~N~l~~--l~~-l~~L~-~L~~L~L~~n~i~~i-~-~l~~l~~L~  113 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--D--GVEYLNNLTQINFSNNQLTD--ITP-LKNLT-KLVDILMNNNQIADI-T-PLANLTNLT  113 (384)
T ss_dssp             TTCCEEECCSSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCCC-G-GGTTCTTCC
T ss_pred             CCCCEEECCCCCCCCc--c--ccccCCCCCEEeCcCCcCCC--Ccc-ccCCc-ccccccccccccccc-c-ccccccccc
Confidence            4799999999999753  3  67889999999999999987  554 66776 999999999999654 3 389999999


Q ss_pred             EEEccCCcccccccccccCCccccEEEccccccc-----------------------------------------ccCch
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS-----------------------------------------GQITS  179 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~-----------------------------------------~~~p~  179 (517)
                      .|++++|.+++..+.  .....+..+....|.+.                                         .....
T Consensus       114 ~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
T d2omza2         114 GLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS  191 (384)
T ss_dssp             EEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            999999987753222  22233333333222211                                         11234


Q ss_pred             hhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEE
Q 036049          180 SLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIID  259 (517)
Q Consensus       180 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~  259 (517)
                      .+..+++++.+++++|.+++       ++. ...  +++|++|++++|.++..+              .+..+++|+.|+
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~-------~~~-~~~--~~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~  247 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISD-------ITP-LGI--LTNLDELSLNGNQLKDIG--------------TLASLTNLTDLD  247 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCC-------CGG-GGG--CTTCCEEECCSSCCCCCG--------------GGGGCTTCSEEE
T ss_pred             ccccccccceeeccCCccCC-------CCc-ccc--cCCCCEEECCCCCCCCcc--------------hhhcccccchhc
Confidence            45667788888888887763       222 122  678888888888877643              235677888888


Q ss_pred             ccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCc
Q 036049          260 LSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFD  339 (517)
Q Consensus       260 Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  339 (517)
                      +++|.+++ ++.  +..+++|+.++++........                          .......++.++++.|.+.
T Consensus       248 l~~n~l~~-~~~--~~~~~~L~~L~l~~~~l~~~~--------------------------~~~~~~~l~~l~~~~n~l~  298 (384)
T d2omza2         248 LANNQISN-LAP--LSGLTKLTELKLGANQISNIS--------------------------PLAGLTALTNLELNENQLE  298 (384)
T ss_dssp             CCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCG--------------------------GGTTCTTCSEEECCSSCCS
T ss_pred             cccCccCC-CCc--ccccccCCEeeccCcccCCCC--------------------------ccccccccccccccccccc
Confidence            88888874 332  666777888777653221100                          0011334556666666665


Q ss_pred             ccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCc
Q 036049          340 GAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQ  419 (517)
Q Consensus       340 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~  419 (517)
                      +.  ..+..+++++.|++++|++++..  .+..+++|++|++++|+|++ ++ .+..+++|++|++++|++++.+| ...
T Consensus       299 ~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~  371 (384)
T d2omza2         299 DI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-LAN  371 (384)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTT
T ss_pred             cc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hcc
Confidence            42  23566677777777777776432  26667777777777777763 33 46677777777777777776554 344


Q ss_pred             CCccCCCcccCC
Q 036049          420 FATFDNTSFDGN  431 (517)
Q Consensus       420 ~~~l~~~~~~~N  431 (517)
                      ++.++.+++++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            556666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.9e-25  Score=212.81  Aligned_cols=269  Identities=21%  Similarity=0.253  Sum_probs=184.6

Q ss_pred             cccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh-hhhcccCCcEEEccCCCCcc
Q 036049           49 CSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE-IINLSCSLKLLDLRSCGFWG  127 (517)
Q Consensus        49 C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~  127 (517)
                      |.|+++.|..            ++++ .+|.  .+  .+++++|+|++|+|+.  +|+. +..+. +|++|++++|.+..
T Consensus        10 c~~~~~~C~~------------~~L~-~lP~--~l--~~~l~~L~Ls~N~i~~--l~~~~f~~l~-~L~~L~l~~n~~~~   69 (305)
T d1xkua_          10 CHLRVVQCSD------------LGLE-KVPK--DL--PPDTALLDLQNNKITE--IKDGDFKNLK-NLHTLILINNKISK   69 (305)
T ss_dssp             EETTEEECTT------------SCCC-SCCC--SC--CTTCCEEECCSSCCCC--BCTTTTTTCT-TCCEEECCSSCCCC
T ss_pred             ecCCEEEecC------------CCCC-ccCC--CC--CCCCCEEECcCCcCCC--cChhHhhccc-cccccccccccccc
Confidence            7888888863            3454 3344  33  2679999999999987  7764 44555 99999999999987


Q ss_pred             cCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccc
Q 036049          128 KVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKV  207 (517)
Q Consensus       128 ~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  207 (517)
                      ..|..|.++++|++|++++|+++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++...|.....    ...
T Consensus        70 i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----~~~  142 (305)
T d1xkua_          70 ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----GIE  142 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----GBC
T ss_pred             cchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc----CCC
Confidence            77888999999999999999998 455543  35788999999999877777777788888888887765421    122


Q ss_pred             ccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049          208 HKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE  287 (517)
Q Consensus       208 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~  287 (517)
                      +..+..  +++|+.+++++|.++.++.               ..+++|+.|++++|.+++..+ ..|..           
T Consensus       143 ~~~~~~--l~~L~~l~l~~n~l~~l~~---------------~~~~~L~~L~l~~n~~~~~~~-~~~~~-----------  193 (305)
T d1xkua_         143 NGAFQG--MKKLSYIRIADTNITTIPQ---------------GLPPSLTELHLDGNKITKVDA-ASLKG-----------  193 (305)
T ss_dssp             TTGGGG--CTTCCEEECCSSCCCSCCS---------------SCCTTCSEEECTTSCCCEECT-GGGTT-----------
T ss_pred             cccccc--ccccCccccccCCccccCc---------------ccCCccCEEECCCCcCCCCCh-hHhhc-----------
Confidence            223333  7788888888888776532               235678888888887774333 22222           


Q ss_pred             ccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCC
Q 036049          288 LRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIP  367 (517)
Q Consensus       288 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  367 (517)
                                                           ...++.|++++|.+.+..+..+.++++|++|+|++|+|+ .+|
T Consensus       194 -------------------------------------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp  235 (305)
T d1xkua_         194 -------------------------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP  235 (305)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred             -------------------------------------cccccccccccccccccccccccccccceeeeccccccc-ccc
Confidence                                                 223444555566666666666667777777777777776 556


Q ss_pred             hhccCCCCCCeeeCCCCcccccCccc------cccCCCCCEEeccCCccc
Q 036049          368 SCLGNLTNLESLDLSNNKFSGRIPQQ------LVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       368 ~~l~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~l~~N~l~  411 (517)
                      ..|..+++|++|+|++|+|+......      +..+++|+.|++++|++.
T Consensus       236 ~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            66777777777777777776432222      234566777777777664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.3e-25  Score=215.14  Aligned_cols=270  Identities=22%  Similarity=0.290  Sum_probs=204.6

Q ss_pred             CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEE
Q 036049           88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY  167 (517)
Q Consensus        88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~  167 (517)
                      .++.+|-++++++.  +|+.+.   +++++|+|++|+|+...+..|.++++|++|++++|.+....|..|.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~~--lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLEK--VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCCS--CCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCCc--cCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            45677777777876  676553   3788888888888555555788888888888888888877778888888888888


Q ss_pred             cccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCC
Q 036049          168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR  247 (517)
Q Consensus       168 L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~  247 (517)
                      +++|+++ .+|..  ....++.|++.+|.+.       .++...+. ....+..++...|........          ..
T Consensus        86 l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~-------~l~~~~~~-~~~~~~~l~~~~n~~~~~~~~----------~~  144 (305)
T d1xkua_          86 LSKNQLK-ELPEK--MPKTLQELRVHENEIT-------KVRKSVFN-GLNQMIVVELGTNPLKSSGIE----------NG  144 (305)
T ss_dssp             CCSSCCS-BCCSS--CCTTCCEEECCSSCCC-------BBCHHHHT-TCTTCCEEECCSSCCCGGGBC----------TT
T ss_pred             ccCCccC-cCccc--hhhhhhhhhccccchh-------hhhhhhhh-ccccccccccccccccccCCC----------cc
Confidence            8888887 44443  2356777888888776       33333222 156667777777754433211          12


Q ss_pred             CCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhh
Q 036049          248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI  327 (517)
Q Consensus       248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (517)
                      .+..+++|+.+++++|.+. .+|..                                                   .+++
T Consensus       145 ~~~~l~~L~~l~l~~n~l~-~l~~~---------------------------------------------------~~~~  172 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNIT-TIPQG---------------------------------------------------LPPS  172 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCC-SCCSS---------------------------------------------------CCTT
T ss_pred             ccccccccCccccccCCcc-ccCcc---------------------------------------------------cCCc
Confidence            3456778888888888776 44432                                                   1456


Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD  407 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  407 (517)
                      ++.|++++|...+..+..+..++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|..|..+++|++|++++
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCC
Confidence            778889999999888899999999999999999999888889999999999999999998 6788999999999999999


Q ss_pred             CcccccCCCC-------CcCCccCCCcccCCCCCCC
Q 036049          408 NYLTGLIPQG-------KQFATFDNTSFDGNSGLCG  436 (517)
Q Consensus       408 N~l~~~~p~~-------~~~~~l~~~~~~~Np~~c~  436 (517)
                      |+|+......       ....++..+++.|||+.+.
T Consensus       252 N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            9999654332       2345677788999998763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=3.6e-25  Score=219.13  Aligned_cols=302  Identities=18%  Similarity=0.196  Sum_probs=222.4

Q ss_pred             EcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccC
Q 036049           67 NLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGF  146 (517)
Q Consensus        67 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  146 (517)
                      .++.+.+++.+    ....+.+|++|+++++.|+.  + +.+..+. +|++|++++|++++ +| .|+++++|++|++++
T Consensus        28 ~l~~~~~~~~~----~~~~l~~l~~L~l~~~~I~~--l-~gl~~L~-nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~   97 (384)
T d2omza2          28 VLGKTNVTDTV----SQTDLDQVTTLQADRLGIKS--I-DGVEYLN-NLTQINFSNNQLTD-IT-PLKNLTKLVDILMNN   97 (384)
T ss_dssp             HTTCSSTTSEE----CHHHHTTCCEEECCSSCCCC--C-TTGGGCT-TCCEEECCSSCCCC-CG-GGTTCTTCCEEECCS
T ss_pred             HhCCCCCCCcc----CHHHhCCCCEEECCCCCCCC--c-cccccCC-CCCEEeCcCCcCCC-Cc-cccCCcccccccccc
Confidence            45555565544    34567899999999999986  4 3566666 99999999999965 44 399999999999999


Q ss_pred             CcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCccee-------------------------
Q 036049          147 NNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTM-------------------------  201 (517)
Q Consensus       147 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~-------------------------  201 (517)
                      |.+.+..  .++++++|+.|++++|.+++..+  ......+..+....|.+....                         
T Consensus        98 n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (384)
T d2omza2          98 NQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN  173 (384)
T ss_dssp             SCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTT
T ss_pred             ccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhcc
Confidence            9998643  38899999999999999885433  223344444444333322110                         


Q ss_pred             ----------ccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049          202 ----------EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS  271 (517)
Q Consensus       202 ----------~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  271 (517)
                                ............  +++++.+++++|.+++..+.              ...++|++|++++|.++ .++ 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~--l~~~~~l~l~~n~i~~~~~~--------------~~~~~L~~L~l~~n~l~-~~~-  235 (384)
T d2omza2         174 LTTLERLDISSNKVSDISVLAK--LTNLESLIATNNQISDITPL--------------GILTNLDELSLNGNQLK-DIG-  235 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGG--CTTCSEEECCSSCCCCCGGG--------------GGCTTCCEEECCSSCCC-CCG-
T ss_pred             cccccccccccccccccccccc--ccccceeeccCCccCCCCcc--------------cccCCCCEEECCCCCCC-Ccc-
Confidence                      000111222333  88999999999999886543              55789999999999998 454 


Q ss_pred             hhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCC
Q 036049          272 KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG  351 (517)
Q Consensus       272 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  351 (517)
                       .+..+++|+.++++++.....                          ......+.|+.|+++++.+++..  .+..++.
T Consensus       236 -~l~~l~~L~~L~l~~n~l~~~--------------------------~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~  286 (384)
T d2omza2         236 -TLASLTNLTDLDLANNQISNL--------------------------APLSGLTKLTELKLGANQISNIS--PLAGLTA  286 (384)
T ss_dssp             -GGGGCTTCSEEECCSSCCCCC--------------------------GGGTTCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             -hhhcccccchhccccCccCCC--------------------------CcccccccCCEeeccCcccCCCC--ccccccc
Confidence             367788899988877432210                          00122567999999999998543  3778899


Q ss_pred             CCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCC
Q 036049          352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGN  431 (517)
Q Consensus       352 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N  431 (517)
                      ++.+++++|.+++ + ..+..+++++.|++++|++++..  .+..+++|++|++++|+|++. |....++.++.+++++|
T Consensus       287 l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         287 LTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHN  361 (384)
T ss_dssp             CSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-hhHcCCCCCCEEECCCC
Confidence            9999999999984 3 34788999999999999999653  388999999999999999864 44566788888999998


Q ss_pred             CCC
Q 036049          432 SGL  434 (517)
Q Consensus       432 p~~  434 (517)
                      ...
T Consensus       362 ~l~  364 (384)
T d2omza2         362 QIS  364 (384)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.1e-25  Score=216.59  Aligned_cols=134  Identities=22%  Similarity=0.357  Sum_probs=114.4

Q ss_pred             CCcEEEEEcCC-CCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCC
Q 036049           60 TGHVVKLNLSH-SCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTR  138 (517)
Q Consensus        60 ~~~l~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  138 (517)
                      -.+++.|+|++ |.++|.+|.  .++++++|++|+|++|++.+. .+..+.... .|+++++++|.+.+.+|..|+++++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~--~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~-~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             Ccccccccccccccccccccc--ccccccccchhhhcccccccc-ccccccchh-hhcccccccccccccCchhhccCcc
Confidence            35789999986 889998988  999999999999999999874 444555555 9999999999999999999999999


Q ss_pred             CcEEEccCCcccccccccccCCccc-cEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          139 LQFLYLGFNNFSGDLLGSIGNLRSL-EAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       139 L~~L~Ls~n~i~~~~p~~~~~l~~L-~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      |+++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++.+...
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~  210 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE  210 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            9999999999999999999988876 899999999998888777665443 4666665544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=206.41  Aligned_cols=208  Identities=20%  Similarity=0.205  Sum_probs=119.6

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcc-cccccccCchhhhcCCccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS-KCNFSGQITSSLRNLTELVVLDM  192 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~l  192 (517)
                      ++++|+|++|+|++..+..|.++++|++|++++|.+....+..+..+..++.++.. .+.++...+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            55666666666644444556666666666666666665555556666666666543 34444444555666666666666


Q ss_pred             ccccCcceecccccccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049          193 AQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS  271 (517)
Q Consensus       193 ~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  271 (517)
                      ++|.+.       .++. .+..  ..+|+.+++++|.++++++.            .+..+++|++|++++|+++ .   
T Consensus       113 ~~n~~~-------~~~~~~~~~--~~~L~~l~l~~N~l~~i~~~------------~f~~~~~L~~L~l~~N~l~-~---  167 (284)
T d1ozna_         113 DRCGLQ-------ELGPGLFRG--LAALQYLYLQDNALQALPDD------------TFRDLGNLTHLFLHGNRIS-S---  167 (284)
T ss_dssp             TTSCCC-------CCCTTTTTT--CTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCC-E---
T ss_pred             CCcccc-------cccccccch--hcccchhhhccccccccChh------------HhccccchhhcccccCccc-c---
Confidence            655543       1111 1112  45555555555555554322            2344555556666555554 2   


Q ss_pred             hhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCC
Q 036049          272 KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG  351 (517)
Q Consensus       272 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  351 (517)
                                                                                           ..+..|.++++
T Consensus       168 ---------------------------------------------------------------------l~~~~f~~l~~  178 (284)
T d1ozna_         168 ---------------------------------------------------------------------VPERAFRGLHS  178 (284)
T ss_dssp             ---------------------------------------------------------------------ECTTTTTTCTT
T ss_pred             ---------------------------------------------------------------------cchhhhccccc
Confidence                                                                                 23334555666


Q ss_pred             CCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049          352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       352 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  415 (517)
                      |+.+++++|++++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|++.+..+
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            6666666666666666666666667777777776666566666666666666666666665443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-24  Score=200.57  Aligned_cols=66  Identities=29%  Similarity=0.348  Sum_probs=40.9

Q ss_pred             cccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049          345 SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       345 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  411 (517)
                      .+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            3445566666666666666555555666666666666666666 55655556666666666655554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=198.42  Aligned_cols=227  Identities=19%  Similarity=0.229  Sum_probs=169.7

Q ss_pred             cEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccccc-
Q 036049          116 KLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQ-  194 (517)
Q Consensus       116 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-  194 (517)
                      ..++.+++++ ..+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....+..+..++.++.++... 
T Consensus        14 ~~v~c~~~~L-~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGL-QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCC-SSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCC-CccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            3456777776 46676554  5688999999999866667788899999999999988877777777777777766543 


Q ss_pred             ccCcceecccccc-ccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049          195 NSYGGTMEIEGKV-HKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS  273 (517)
Q Consensus       195 N~l~~~~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  273 (517)
                      |.++       .+ +..+..  +++|++|++++|.+......            .+....+|+.+++++|.++       
T Consensus        91 ~~~~-------~l~~~~~~~--l~~L~~L~l~~n~~~~~~~~------------~~~~~~~L~~l~l~~N~l~-------  142 (284)
T d1ozna_          91 AQLR-------SVDPATFHG--LGRLHTLHLDRCGLQELGPG------------LFRGLAALQYLYLQDNALQ-------  142 (284)
T ss_dssp             TTCC-------CCCTTTTTT--CTTCCEEECTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCC-------
T ss_pred             cccc-------cccchhhcc--cccCCEEecCCccccccccc------------ccchhcccchhhhcccccc-------
Confidence            3333       22 222333  56666666666665543322            2234455555555555554       


Q ss_pred             hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049          274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ  353 (517)
Q Consensus       274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  353 (517)
                                                                                        +..+..|..+++|+
T Consensus       143 ------------------------------------------------------------------~i~~~~f~~~~~L~  156 (284)
T d1ozna_         143 ------------------------------------------------------------------ALPDDTFRDLGNLT  156 (284)
T ss_dssp             ------------------------------------------------------------------CCCTTTTTTCTTCC
T ss_pred             ------------------------------------------------------------------ccChhHhccccchh
Confidence                                                                              33334567788999


Q ss_pred             eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCC
Q 036049          354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNS  432 (517)
Q Consensus       354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np  432 (517)
                      +|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++|++++|++++.+|.. .....+..+++++||
T Consensus       157 ~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            9999999999888889999999999999999999999999999999999999999999887754 456778889999999


Q ss_pred             CCCCCCC
Q 036049          433 GLCGKPL  439 (517)
Q Consensus       433 ~~c~~~~  439 (517)
                      +.|+|+.
T Consensus       237 l~C~C~~  243 (284)
T d1ozna_         237 WVCDCRA  243 (284)
T ss_dssp             EECSGGG
T ss_pred             CCCCccc
Confidence            9999865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.4e-23  Score=192.57  Aligned_cols=92  Identities=26%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             cCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCC
Q 036049          347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNT  426 (517)
Q Consensus       347 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~  426 (517)
                      ..+.+++.|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+..++....+..++.+
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEE
Confidence            34456666666666666555555666667777777777776655566666677777777777766433334455566666


Q ss_pred             cccCCCCCCCCC
Q 036049          427 SFDGNSGLCGKP  438 (517)
Q Consensus       427 ~~~~Np~~c~~~  438 (517)
                      ++.||||.|+|.
T Consensus       201 ~L~~Np~~CdC~  212 (266)
T d1p9ag_         201 FLHGNPWLCNCE  212 (266)
T ss_dssp             ECCSCCBCCSGG
T ss_pred             EecCCCCCCCcc
Confidence            677777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=1.4e-18  Score=168.78  Aligned_cols=296  Identities=19%  Similarity=0.166  Sum_probs=184.0

Q ss_pred             cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049           62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF  141 (517)
Q Consensus        62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  141 (517)
                      ++++|||++++++. +|+  .   .++|++|++++|+|+.  +|..+    .+|+.|++++|.+. .+++ +  .+.|++
T Consensus        39 ~l~~LdLs~~~L~~-lp~--~---~~~L~~L~Ls~N~l~~--lp~~~----~~L~~L~l~~n~l~-~l~~-l--p~~L~~  102 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE--L---PPHLESLVASCNSLTE--LPELP----QSLKSLLVDNNNLK-ALSD-L--PPLLEY  102 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS--C---CTTCSEEECCSSCCSS--CCCCC----TTCCEEECCSSCCS-CCCS-C--CTTCCE
T ss_pred             CCCEEEeCCCCCCC-CCC--C---CCCCCEEECCCCCCcc--cccch----hhhhhhhhhhcccc-hhhh-h--cccccc
Confidence            57899999999974 454  2   5789999999999986  77542    38999999999984 4443 2  246999


Q ss_pred             EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049          142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA  221 (517)
Q Consensus       142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~  221 (517)
                      |++++|.+. .+|. ++.+++|++|++++|.+.. .+..   ...+..+.+..+....        ...+..  ++.++.
T Consensus       103 L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~~--------~~~l~~--l~~l~~  166 (353)
T d1jl5a_         103 LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE--------LPELQN--LPFLTA  166 (353)
T ss_dssp             EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS--------CCCCTT--CTTCCE
T ss_pred             ccccccccc-cccc-hhhhccceeeccccccccc-cccc---cccccchhhccccccc--------cccccc--ccccee
Confidence            999999998 5564 6889999999999999873 3333   3455556665554431        122223  778888


Q ss_pred             EeccCCcccccCCCCCC------CCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccccccc
Q 036049          222 LNLSHNLLTGFDQHLVL------LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVL  295 (517)
Q Consensus       222 L~Ls~n~l~~~~~~~~l------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~  295 (517)
                      +++++|.+...+.....      ..........+..++.|+.+++++|... .++..    ..++..+.+..........
T Consensus       167 L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~----~~~l~~~~~~~~~~~~~~~  241 (353)
T d1jl5a_         167 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTDLPE  241 (353)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc----ccccccccccccccccccc
Confidence            99988887765432211      0011122223466788999999988876 44421    2233333333321111000


Q ss_pred             CCCcccchhhhccceeeeecC-ccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCC
Q 036049          296 SPSGKLLMTTYDYLLTMNIKG-RMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT  374 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  374 (517)
                      ..         ..+....... ........+......++..+.+.+    ....+++|++|+|++|+|+ .+|..   ++
T Consensus       242 ~~---------~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~~---~~  304 (353)
T d1jl5a_         242 LP---------QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPAL---PP  304 (353)
T ss_dssp             CC---------TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCCC---CT
T ss_pred             cc---------ccccccccccccccccccccchhcccccccCcccc----ccccCCCCCEEECCCCccC-ccccc---cC
Confidence            00         0000000000 000111122333344555555543    2334678999999999998 66753   57


Q ss_pred             CCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCC
Q 036049          375 NLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ  416 (517)
Q Consensus       375 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  416 (517)
                      +|+.|+|++|+|+ .+|..   +++|++|++++|+|+. +|+
T Consensus       305 ~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp~  341 (353)
T d1jl5a_         305 RLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPD  341 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CCC
T ss_pred             CCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC-CCc
Confidence            8999999999998 56653   4679999999999884 454

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.9e-18  Score=157.15  Aligned_cols=58  Identities=28%  Similarity=0.467  Sum_probs=43.0

Q ss_pred             ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049          346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD  407 (517)
Q Consensus       346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  407 (517)
                      +.++++|++|+|++|++++ ++. ++++++|++|+|++|++++ ++ .+.++++|++|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            5567788888888888874 433 7778888888888888874 33 377888888888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.2e-18  Score=156.81  Aligned_cols=52  Identities=25%  Similarity=0.427  Sum_probs=35.9

Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN  383 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  383 (517)
                      |+.|++++|++++ ++ .+..+++|++|+|++|++++ ++. ++++++|+.|++++
T Consensus       175 L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         175 LTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             ceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            4444444454443 22 26678889999999999884 443 78899999998863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.2e-19  Score=161.38  Aligned_cols=85  Identities=16%  Similarity=0.126  Sum_probs=39.1

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccc-cccccCCccccEEEccc-ccccccCchhhhcCCcccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLEAIYMSK-CNFSGQITSSLRNLTELVVLD  191 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  191 (517)
                      ++++|++++|.+....+..|.++++|++|++++|.+...+ +..|..++.++++.+.. |.+....+..|.++++|++|+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4444555555443333334455555555555555444322 23344555555554432 344434444444555555555


Q ss_pred             cccccCc
Q 036049          192 MAQNSYG  198 (517)
Q Consensus       192 l~~N~l~  198 (517)
                      +++|.+.
T Consensus       110 l~~~~l~  116 (242)
T d1xwdc1         110 ISNTGIK  116 (242)
T ss_dssp             EESCCCC
T ss_pred             cchhhhc
Confidence            5554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-18  Score=158.12  Aligned_cols=218  Identities=19%  Similarity=0.219  Sum_probs=161.9

Q ss_pred             cccceeecCCC---------CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEE
Q 036049           49 CSWDGVHCNKN---------TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLD  119 (517)
Q Consensus        49 C~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~  119 (517)
                      |..+.+.|...         +..++.|+|++|.++...+.  +|.++++|++|++++|.+... ++...+...+.++++.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~--~f~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIR   84 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTT--TTTTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCEEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChh--Hhhccchhhhhhhccccccce-eecccccccccccccc
Confidence            66677788521         24688999999999866555  788999999999999988663 4444444334888888


Q ss_pred             ccC-CCCcccCCccCCCCCCCcEEEccCCcccccccc-cccCCccccEEEcccccccccCchhhhcCC-ccccccccccc
Q 036049          120 LRS-CGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLG-SIGNLRSLEAIYMSKCNFSGQITSSLRNLT-ELVVLDMAQNS  196 (517)
Q Consensus       120 Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~N~  196 (517)
                      +.. |.+....+..|.++++|++|++++|.+....+. .+..++.+..+...++.+....+..|.+++ .++.|++++|+
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            764 567677777889999999999999988753332 234566777777788888766666776664 78889999998


Q ss_pred             CcceeccccccccccccccCCCCCeE-eccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhh
Q 036049          197 YGGTMEIEGKVHKWLLDPNMQNLNAL-NLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL  275 (517)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  275 (517)
                      ++       .++...+.  ..+++++ ++++|+++.+++.            .|.++++|++|++++|+++ .+|...|.
T Consensus       165 l~-------~i~~~~~~--~~~l~~~~~l~~n~l~~l~~~------------~f~~l~~L~~L~Ls~N~l~-~l~~~~~~  222 (242)
T d1xwdc1         165 IQ-------EIHNCAFN--GTQLDELNLSDNNNLEELPND------------VFHGASGPVILDISRTRIH-SLPSYGLE  222 (242)
T ss_dssp             CC-------EECTTTTT--TCCEEEEECTTCTTCCCCCTT------------TTTTSCCCSEEECTTSCCC-CCCSSSCT
T ss_pred             cc-------cccccccc--chhhhccccccccccccccHH------------HhcCCCCCCEEECCCCcCC-ccCHHHHc
Confidence            87       55555555  5666555 5677888876543            3678999999999999998 88888888


Q ss_pred             cccccceeccCccccc
Q 036049          276 CWNAMKIVNASELRYL  291 (517)
Q Consensus       276 ~l~~L~~L~l~~~~~l  291 (517)
                      ++..|+.+++..++.+
T Consensus       223 ~l~~L~~l~~~~l~~l  238 (242)
T d1xwdc1         223 NLKKLRARSTYNLKKL  238 (242)
T ss_dssp             TCCEEESSSEESSSCS
T ss_pred             CCcccccCcCCCCCcC
Confidence            8888888877664433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=1.7e-16  Score=153.88  Aligned_cols=281  Identities=20%  Similarity=0.219  Sum_probs=182.0

Q ss_pred             CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049           60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL  139 (517)
Q Consensus        60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  139 (517)
                      .+++++|+|++|+|+ .+|.  .   +.+|+.|++++|+++.  ++.    +.+.|++|++++|.+. .+|. ++.+++|
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~--~---~~~L~~L~l~~n~l~~--l~~----lp~~L~~L~L~~n~l~-~lp~-~~~l~~L  122 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPE--L---PQSLKSLLVDNNNLKA--LSD----LPPLLEYLGVSNNQLE-KLPE-LQNSSFL  122 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCC--C---CTTCCEEECCSSCCSC--CCS----CCTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             CCCCCEEECCCCCCc-cccc--c---hhhhhhhhhhhcccch--hhh----hccccccccccccccc-cccc-hhhhccc
Confidence            357999999999998 4454  3   4689999999999976  442    3348999999999994 5664 6889999


Q ss_pred             cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccc-------------cc
Q 036049          140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIE-------------GK  206 (517)
Q Consensus       140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~-------------~~  206 (517)
                      ++|++++|.+.. .+..   ...+..+.+.++...  .+..+..++.++.+++++|.........             ..
T Consensus       123 ~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~  196 (353)
T d1jl5a_         123 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE  196 (353)
T ss_dssp             CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS
T ss_pred             eeeccccccccc-cccc---cccccchhhcccccc--ccccccccccceecccccccccccccccccccccccccccccc
Confidence            999999999874 3332   345666777666554  2345667777888888777655322100             01


Q ss_pred             cccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccC
Q 036049          207 VHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS  286 (517)
Q Consensus       207 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~  286 (517)
                      ++ ....  ++.|+.+++++|.....+                ....++..+.+.++.+.. .+..    ...+......
T Consensus       197 ~~-~~~~--l~~L~~l~l~~n~~~~~~----------------~~~~~l~~~~~~~~~~~~-~~~~----~~~l~~~~~~  252 (353)
T d1jl5a_         197 LP-ELQN--LPFLTTIYADNNLLKTLP----------------DLPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVS  252 (353)
T ss_dssp             CC-CCTT--CTTCCEEECCSSCCSSCC----------------SCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECC
T ss_pred             cc-cccc--cccccccccccccccccc----------------cccccccccccccccccc-cccc----cccccccccc
Confidence            12 1222  788999999998876543                234578888888888763 3321    1222222222


Q ss_pred             cc--cccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccc
Q 036049          287 EL--RYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQG  364 (517)
Q Consensus       287 ~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  364 (517)
                      ..  ..+......          .................+++|++|++++|+++ .+|..   +++|+.|+|++|+|+ 
T Consensus       253 ~~~~~~l~~l~~~----------~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-  317 (353)
T d1jl5a_         253 ENIFSGLSELPPN----------LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-  317 (353)
T ss_dssp             SSCCSEESCCCTT----------CCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-
T ss_pred             cccccccccccch----------hcccccccCccccccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-
Confidence            11  111100000          00000001111122334678999999999998 56653   578999999999998 


Q ss_pred             cCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049          365 HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       365 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  406 (517)
                      .+|..   +++|++|+|++|+|+ .+|...   .+|+.|.+.
T Consensus       318 ~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         318 EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence            67753   568999999999998 667533   457777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.9e-17  Score=145.86  Aligned_cols=177  Identities=19%  Similarity=0.289  Sum_probs=124.6

Q ss_pred             EEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEcc
Q 036049           66 LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLG  145 (517)
Q Consensus        66 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  145 (517)
                      +.++.+.+++..    ....+.++++|++++|.++.  +. .+..+. +|++|++++|.+++..  .++++++|++|+++
T Consensus        23 ~~l~~~~~~~~~----~~~~l~~l~~L~l~~~~i~~--l~-~l~~l~-nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~   92 (199)
T d2omxa2          23 TVLGKTNVTDTV----SQTDLDQVTTLQADRLGIKS--ID-GVEYLN-NLTQINFSNNQLTDIT--PLKNLTKLVDILMN   92 (199)
T ss_dssp             HHTTCSSTTSEE----CHHHHTTCCEEECTTSCCCC--CT-TGGGCT-TCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             HHhCCCCCCCcc----CHHHhcCCCEEECCCCCCCC--cc-ccccCC-CcCcCccccccccCcc--cccCCccccccccc
Confidence            345555555443    23456788888888888875  32 455555 8888888888885433  27888888888888


Q ss_pred             CCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEecc
Q 036049          146 FNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLS  225 (517)
Q Consensus       146 ~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  225 (517)
                      +|.+.. ++ .++++++|++|++++|.+...  ..+..+++|+.|++++|++.       .++ .+..  +++|++|+++
T Consensus        93 ~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-------~~~-~l~~--~~~L~~L~l~  158 (199)
T d2omxa2          93 NNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-------DIS-ALSG--LTSLQQLNFS  158 (199)
T ss_dssp             SSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-------CCG-GGTT--CTTCSEEECC
T ss_pred             cccccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-------ccc-cccc--cccccccccc
Confidence            888774 33 477888888888888887642  34777888888888888775       333 2334  7888888888


Q ss_pred             CCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhccccccee
Q 036049          226 HNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV  283 (517)
Q Consensus       226 ~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L  283 (517)
                      +|+++++.+              +.++++|++|++++|+++ .++.  +..+++|+.|
T Consensus       159 ~n~l~~l~~--------------l~~l~~L~~L~ls~N~i~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         159 SNQVTDLKP--------------LANLTTLERLDISSNKVS-DISV--LAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCGG--------------GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred             cccccCCcc--------------ccCCCCCCEEECCCCCCC-CCcc--ccCCCCCCcC
Confidence            888877532              367888999999998887 4542  5566666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=3.2e-18  Score=151.31  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=73.8

Q ss_pred             hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049          327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  406 (517)
                      .|++|++++|+++...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+...... ..-...++.+.+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~  157 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLN  157 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCS
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhccc
Confidence            344455555666555566677888888888888888877777788888888888888887643221 1111235556677


Q ss_pred             CCcccccCCCCCcCCccCCCcccCCCCCCCCCCCCCC
Q 036049          407 DNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGC  443 (517)
Q Consensus       407 ~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~~~~~c  443 (517)
                      .|.+++..|.  .+..+.-.++..|.+.|.++-...|
T Consensus       158 ~~~~~c~~p~--~l~~~~l~~L~~n~l~C~~~~~~g~  192 (192)
T d1w8aa_         158 GGAARCGAPS--KVRDVQIKDLPHSEFKCSSENSEGC  192 (192)
T ss_dssp             GGGCBBCSST--TTTTSBGGGSCTTTCCCCCC---CC
T ss_pred             CCCeEeCCCh--hhcCCEeeecCHhhCcCCCCCCCCC
Confidence            7777766664  3455566677788887866544444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=3.2e-18  Score=151.31  Aligned_cols=170  Identities=19%  Similarity=0.238  Sum_probs=119.6

Q ss_pred             EEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh-hhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049           66 LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI-INLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL  144 (517)
Q Consensus        66 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  144 (517)
                      ++.++++++ .+|.  .+  .+++++|+|++|+|+.. ++... ..+. +|++|+|++|.+....+..|..+++|++|+|
T Consensus        13 v~Cs~~~L~-~iP~--~l--p~~l~~L~Ls~N~i~~~-~~~~~f~~l~-~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          13 VDCTGRGLK-EIPR--DI--PLHTTELLLNDNELGRI-SSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             EECTTSCCS-SCCS--CC--CTTCSEEECCSCCCCSB-CCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             EEEeCCCcC-ccCC--CC--CCCCCEEEeCCCCCccc-ccccccCCCc-eEeeeeccccccccccccccccccccceeee
Confidence            344455665 3343  33  25788999999998753 44444 4455 8999999999988888888888999999999


Q ss_pred             cCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEec
Q 036049          145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNL  224 (517)
Q Consensus       145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L  224 (517)
                      ++|+|+...+.+|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.......     ++    ...++.+.+
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-----~~----~~~l~~~~l  156 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-----WF----AEWLRKKSL  156 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-----HH----HHHHHHHCC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-----HH----hhhhhhhcc
Confidence            999999877888889999999999999998877888888899999999988876321111     11    112444555


Q ss_pred             cCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049          225 SHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT  266 (517)
Q Consensus       225 s~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (517)
                      ..+.++...|               ..+..++.++++.|.+.
T Consensus       157 ~~~~~~c~~p---------------~~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         157 NGGAARCGAP---------------SKVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             SGGGCBBCSS---------------TTTTTSBGGGSCTTTCC
T ss_pred             cCCCeEeCCC---------------hhhcCCEeeecCHhhCc
Confidence            5565554322               23455666677777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.1e-17  Score=145.04  Aligned_cols=180  Identities=21%  Similarity=0.327  Sum_probs=124.9

Q ss_pred             EcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccC
Q 036049           67 NLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGF  146 (517)
Q Consensus        67 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  146 (517)
                      ++..+.+++.++    ...+.+|++|++++|.++.  ++ .+..+. +|++|++++|++++ ++ .++.+++|++|++++
T Consensus        30 ~l~~~~~~~~~~----~~~L~~L~~L~l~~~~i~~--l~-~l~~l~-~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~   99 (210)
T d1h6ta2          30 NLKKKSVTDAVT----QNELNSIDQIIANNSDIKS--VQ-GIQYLP-NVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDE   99 (210)
T ss_dssp             HTTCSCTTSEEC----HHHHHTCCEEECTTSCCCC--CT-TGGGCT-TCCEEECCSSCCCC-CG-GGTTCTTCCEEECCS
T ss_pred             HhCcCccCCccC----HHHhcCccEEECcCCCCCC--ch-hHhhCC-CCCEEeCCCccccC-cc-ccccCcccccccccc
Confidence            444555544432    2346678888888888766  33 355555 88888888888854 33 367788888888888


Q ss_pred             CcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccC
Q 036049          147 NNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSH  226 (517)
Q Consensus       147 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  226 (517)
                      |++++ ++ .+..+++|+.|++++|.+.. + ..+..+++++.+++++|.+++       . ..+..  +++|+++++++
T Consensus       100 n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~-------~-~~~~~--l~~L~~l~l~~  165 (210)
T d1h6ta2         100 NKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-------I-TVLSR--LTKLDTLSLED  165 (210)
T ss_dssp             SCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-------C-GGGGG--CTTCSEEECCS
T ss_pred             ccccc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc-------c-ccccc--ccccccccccc
Confidence            88874 44 47778888888888887763 2 357778888888888887752       1 12233  77888888888


Q ss_pred             CcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049          227 NLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE  287 (517)
Q Consensus       227 n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~  287 (517)
                      |+++++.+              +.++++|+.|++++|+++ .+|.  +..+++|+.|++++
T Consensus       166 n~l~~i~~--------------l~~l~~L~~L~Ls~N~i~-~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         166 NQISDIVP--------------LAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCCCGG--------------GTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEEE
T ss_pred             cccccccc--------------ccCCCCCCEEECCCCCCC-CChh--hcCCCCCCEEEccC
Confidence            88876532              366788888888888887 5652  67778888877653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=8.9e-17  Score=143.95  Aligned_cols=164  Identities=23%  Similarity=0.338  Sum_probs=136.4

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      ..++.|+++++.++...    .+..+++|++|++++|++++  +++ +..+. +|++|++++|++++ +| .+.++++|+
T Consensus        46 ~~L~~L~l~~~~i~~l~----~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~-~L~~L~l~~n~i~~-l~-~l~~l~~L~  115 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTD--IKP-LANLK-NLGWLFLDENKVKD-LS-SLKDLKKLK  115 (210)
T ss_dssp             HTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             cCccEEECcCCCCCCch----hHhhCCCCCEEeCCCccccC--ccc-cccCc-cccccccccccccc-cc-ccccccccc
Confidence            36899999999997542    57889999999999999987  553 55666 99999999999954 55 589999999


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      .|++++|.+..  ...+..+++|+.+++++|.+++  +..+..+++|+++++++|+++       .++. +..  +++|+
T Consensus       116 ~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-------~i~~-l~~--l~~L~  181 (210)
T d1h6ta2         116 SLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-------DIVP-LAG--LTKLQ  181 (210)
T ss_dssp             EEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-------CCGG-GTT--CTTCC
T ss_pred             ccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccc-------cccc-ccC--CCCCC
Confidence            99999999874  3468899999999999999974  345788999999999999987       3332 444  99999


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccC
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSD  262 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~  262 (517)
                      +|++++|++++++              .+.++++|++|+|++
T Consensus       182 ~L~Ls~N~i~~l~--------------~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         182 NLYLSKNHISDLR--------------ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCBCG--------------GGTTCTTCSEEEEEE
T ss_pred             EEECCCCCCCCCh--------------hhcCCCCCCEEEccC
Confidence            9999999998763              247899999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=140.87  Aligned_cols=160  Identities=23%  Similarity=0.294  Sum_probs=132.1

Q ss_pred             CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049           61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ  140 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  140 (517)
                      .++++|++++++++..  +  .+..+++|++|++++|++++  +++ +..+. +|++|++++|.+.. ++ .+.++++|+
T Consensus        40 ~~l~~L~l~~~~i~~l--~--~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~-~L~~L~l~~n~~~~-~~-~l~~l~~L~  109 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--D--GVEYLNNLTQINFSNNQLTD--ITP-LKNLT-KLVDILMNNNQIAD-IT-PLANLTNLT  109 (199)
T ss_dssp             TTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             cCCCEEECCCCCCCCc--c--ccccCCCcCcCccccccccC--ccc-ccCCc-cccccccccccccc-cc-ccccccccc
Confidence            4789999999999743  2  67889999999999999987  554 66776 99999999999843 44 489999999


Q ss_pred             EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049          141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      .|++++|.+...  ..+..+++|+.|++++|.+.. + +.+..+++|++|++.+|++++       ++. +..  +++|+
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-------l~~-l~~--l~~L~  175 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-------LKP-LAN--LTTLE  175 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-------CGG-GTT--CTTCC
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-------Ccc-ccC--CCCCC
Confidence            999999998853  458899999999999999973 3 368899999999999999873       332 444  99999


Q ss_pred             eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEE
Q 036049          221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRII  258 (517)
Q Consensus       221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L  258 (517)
                      +|++++|+++++++              +.++++|++|
T Consensus       176 ~L~ls~N~i~~i~~--------------l~~L~~L~~L  199 (199)
T d2omxa2         176 RLDISSNKVSDISV--------------LAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCCCGG--------------GGGCTTCSEE
T ss_pred             EEECCCCCCCCCcc--------------ccCCCCCCcC
Confidence            99999999987532              3677888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-19  Score=183.18  Aligned_cols=320  Identities=18%  Similarity=0.132  Sum_probs=176.6

Q ss_pred             CcEEEEEcCCCCceeee-CCCcccccCCCCCEEEcCCCCCCCCC---CchhhhhcccCCcEEEccCCCCccc----CCcc
Q 036049           61 GHVVKLNLSHSCLFGSI-NSSSSLYKLVHLEWLNLALNDFNSSE---IQPEIINLSCSLKLLDLRSCGFWGK----VPHS  132 (517)
Q Consensus        61 ~~l~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~  132 (517)
                      .+|++||++++++++.. ..  .+..++++++|+|++|.++...   +...+.... +|++|||++|.|+..    +.+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~--l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAE--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHH--HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCCEEEeeCCcCChHHHHH--HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHH
Confidence            36899999999997532 22  4567899999999999987421   223344555 999999999998421    2333


Q ss_pred             CC-CCCCCcEEEccCCccccc----ccccccCCccccEEEcccccccccCchh---------------------------
Q 036049          133 IG-NFTRLQFLYLGFNNFSGD----LLGSIGNLRSLEAIYMSKCNFSGQITSS---------------------------  180 (517)
Q Consensus       133 ~~-~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~---------------------------  180 (517)
                      +. ...+|++|+|++|.+++.    ++..+..+++|++|++++|.++......                           
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence            33 335799999999999753    4566788999999999999876321111                           


Q ss_pred             ------hhcCCcccccccccccCccee------------------cccc--c-------cccccccccCCCCCeEeccCC
Q 036049          181 ------LRNLTELVVLDMAQNSYGGTM------------------EIEG--K-------VHKWLLDPNMQNLNALNLSHN  227 (517)
Q Consensus       181 ------l~~l~~L~~L~l~~N~l~~~~------------------~~~~--~-------~~~~~~~~~l~~L~~L~Ls~n  227 (517)
                            +.....++.++++.+......                  ....  .       ....+.  ..+.++.+++++|
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~~~~n  236 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SKASLRELALGSN  236 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccc--ccccccccchhhc
Confidence                  112234444554444322100                  0000  0       000111  1466777777777


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChh---hhhcccccceeccCcccccccccCCCcccchh
Q 036049          228 LLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK---SFLCWNAMKIVNASELRYLQDVLSPSGKLLMT  304 (517)
Q Consensus       228 ~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  304 (517)
                      .+.......       ...........++.+++++|.+.......   .+...+.++.++++....-...          
T Consensus       237 ~~~~~~~~~-------~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~----------  299 (460)
T d1z7xw1         237 KLGDVGMAE-------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG----------  299 (460)
T ss_dssp             BCHHHHHHH-------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH----------
T ss_pred             cccccccch-------hhcccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence            653210000       00001234568999999999886322111   2234556666666653221100          


Q ss_pred             hhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcc----cccCCCCCCeEeCcCcccccc----CChhcc-CCCC
Q 036049          305 TYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPA----SISNLKGLQVLNLHNNNLQGH----IPSCLG-NLTN  375 (517)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~  375 (517)
                       ...+.        .........|+.+++++|.++.....    .+...++|++|+|++|++++.    ++..+. ..+.
T Consensus       300 -~~~l~--------~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~  370 (460)
T d1z7xw1         300 -ARLLC--------ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  370 (460)
T ss_dssp             -HHHHH--------HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             -cchhh--------ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCC
Confidence             00000        00000123455666666666543222    223345677777777766532    222232 3455


Q ss_pred             CCeeeCCCCccccc----CccccccCCCCCEEeccCCccc
Q 036049          376 LESLDLSNNKFSGR----IPQQLVELTFLAFFNVSDNYLT  411 (517)
Q Consensus       376 L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~  411 (517)
                      |++|+|++|.|+..    +++.+..+++|++|++++|+|+
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            77777777766532    3344555666777777777665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3.7e-15  Score=120.75  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             CEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcc
Q 036049           90 EWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS  169 (517)
Q Consensus        90 ~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~  169 (517)
                      |+|+|++|+++.  ++ .+..+. +|++|++++|.+ ..+|+.|+.+++|++|++++|.|+. +| .++.+++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~-~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLL-LVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGT-TCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCC-CCCEEECCCCcc-Ccchhhhhhhhcccccccccccccc-cC-ccccccccCeEECC
Confidence            345555555543  32 244444 555555555555 2344455555555555555555553 22 35555555555555


Q ss_pred             cccccccC-chhhhcCCcccccccccccCc
Q 036049          170 KCNFSGQI-TSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       170 ~n~l~~~~-p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      +|+++... ...+..+++|++|++++|+++
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            55555322 134555555555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-15  Score=143.09  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             CEEEcCCCCCCCCCCchhhhhcc-cCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccccc-ccccccCCccccEEE
Q 036049           90 EWLNLALNDFNSSEIQPEIINLS-CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGD-LLGSIGNLRSLEAIY  167 (517)
Q Consensus        90 ~~L~Ls~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~  167 (517)
                      +.|||+++.+.    |..+.... ..+..+.++...+.... .......+|++||++++.++.. +...+..+++|++|+
T Consensus         3 ~~lDLs~~~l~----~~~l~~l~~~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CEEECCCCCCC----chHHHHHHhccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            35677776653    22222222 13556666655543222 2234456788888888877643 344467778888888


Q ss_pred             cccccccccCchhhhcCCcccccccccc-cCcceeccccccccccccccCCCCCeEeccCC
Q 036049          168 MSKCNFSGQITSSLRNLTELVVLDMAQN-SYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN  227 (517)
Q Consensus       168 L~~n~l~~~~p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  227 (517)
                      +++|.+++..+..+..+++|++|+++++ .++..     .+......  +++|++|+++++
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-----~l~~l~~~--~~~L~~L~ls~c  131 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQTLLSS--CSRLDELNLSWC  131 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHHHHHH--CTTCCEEECCCC
T ss_pred             ccccCCCcHHHHHHhcCCCCcCcccccccccccc-----ccchhhHH--HHhccccccccc
Confidence            8888877666677777788888888774 34310     11111122  677777777775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.4e-15  Score=127.17  Aligned_cols=112  Identities=16%  Similarity=0.108  Sum_probs=71.5

Q ss_pred             ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049           82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR  161 (517)
Q Consensus        82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~  161 (517)
                      .+.+..++++|+|++|+|+.  ++.....+. +|++|+|++|.|.. ++ .|..+++|++|++++|.++...+..+..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~-~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV--IENLGATLD-QFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTT-CCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCCc--cCccccccc-cCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccc
Confidence            45566677777777777766  554333344 77777777777743 33 467777777777777777754444456677


Q ss_pred             cccEEEcccccccccCc-hhhhcCCcccccccccccCc
Q 036049          162 SLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       162 ~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~l~  198 (517)
                      +|++|++++|.+..... ..+..+++|++|++++|.++
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccc
Confidence            77777777777763211 34556666666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.6e-14  Score=116.89  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=95.2

Q ss_pred             EEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEE
Q 036049           64 VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLY  143 (517)
Q Consensus        64 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  143 (517)
                      +.|+|++|+++.. +   .+..+++|++|++++|.++.  +|+.+..+. +|++|++++|.++. +| .++.+++|++|+
T Consensus         1 R~L~Ls~n~l~~l-~---~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~-~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C---HLEQLLLVTHLDLSHNRLRA--LPPALAALR-CLEVLQASDNALEN-VD-GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSSC-C---CGGGGTTCCEEECCSSCCCC--CCGGGGGCT-TCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCCCC-c---ccccCCCCCEEECCCCccCc--chhhhhhhh-cccccccccccccc-cC-ccccccccCeEE
Confidence            4799999999743 2   58899999999999999987  888888777 99999999999954 45 599999999999


Q ss_pred             ccCCcccccc-cccccCCccccEEEcccccccccC---chhhhcCCccccc
Q 036049          144 LGFNNFSGDL-LGSIGNLRSLEAIYMSKCNFSGQI---TSSLRNLTELVVL  190 (517)
Q Consensus       144 Ls~n~i~~~~-p~~~~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L  190 (517)
                      +++|+|+... ...+..+++|++|++++|.++...   ...+..+++|+.|
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999998543 357899999999999999997421   2233345555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=8.3e-16  Score=148.73  Aligned_cols=85  Identities=18%  Similarity=0.281  Sum_probs=53.9

Q ss_pred             hhhhhCCCCCCcc----cCcccccCCCCCCeEeCcCccccccCChh----cc--CCCCCCeeeCCCCccccc----Cccc
Q 036049          328 LAGIILSNKSFDG----AIPASISNLKGLQVLNLHNNNLQGHIPSC----LG--NLTNLESLDLSNNKFSGR----IPQQ  393 (517)
Q Consensus       328 L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~--~l~~L~~L~Ls~N~l~~~----~p~~  393 (517)
                      |+.|++++|.++.    .+...+..+++|++|+|++|.|++.....    +.  ..+.|++|++++|+|...    +...
T Consensus       217 L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~  296 (344)
T d2ca6a1         217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  296 (344)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHH
Confidence            4444444444432    13344566788888888888887543322    22  236788899999988753    2333


Q ss_pred             cc-cCCCCCEEeccCCcccc
Q 036049          394 LV-ELTFLAFFNVSDNYLTG  412 (517)
Q Consensus       394 l~-~l~~L~~L~l~~N~l~~  412 (517)
                      +. +.+.|++|++++|++..
T Consensus       297 l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         297 IDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHCTTCCEEECTTSBSCT
T ss_pred             HHccCCCCCEEECCCCcCCC
Confidence            42 56789999999998864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.1e-15  Score=127.41  Aligned_cols=106  Identities=18%  Similarity=0.180  Sum_probs=68.1

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA  193 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  193 (517)
                      +|++|+|++|+| ..++..+..+++|++|+|++|.|+. + +.|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        19 ~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCC-CccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            677777777777 3445555667777777777777773 3 346777777777777777775555555667777777777


Q ss_pred             cccCcceecccccccc--ccccccCCCCCeEeccCCcccc
Q 036049          194 QNSYGGTMEIEGKVHK--WLLDPNMQNLNALNLSHNLLTG  231 (517)
Q Consensus       194 ~N~l~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~  231 (517)
                      +|++.       .++.  .+..  +++|++|++++|.++.
T Consensus        96 ~N~i~-------~~~~l~~l~~--l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          96 NNSLV-------ELGDLDPLAS--LKSLTYLCILRNPVTN  126 (162)
T ss_dssp             SCCCC-------CGGGGGGGGG--CTTCCEEECCSSGGGG
T ss_pred             ccccc-------cccccccccc--ccccchhhcCCCcccc
Confidence            77665       2221  2222  5556666666665544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.6e-16  Score=159.64  Aligned_cols=197  Identities=19%  Similarity=0.128  Sum_probs=118.5

Q ss_pred             ccccEEEcccccccc-----cCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCC
Q 036049          161 RSLEAIYMSKCNFSG-----QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQH  235 (517)
Q Consensus       161 ~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  235 (517)
                      +.++.+++++|.+..     ...........++.+++++|.+.....  +.....+..  .+.++.+++++|.++.....
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~--~~~~~~l~~--~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRA--KESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHH--CTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccchhhccccccccchhhccccccccccccccccccccccccc--ccccccccc--cccccccccccccccccccc
Confidence            445555555554431     112223346689999999998863210  122233333  78999999999998642110


Q ss_pred             CCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeec
Q 036049          236 LVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIK  315 (517)
Q Consensus       236 ~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  315 (517)
                      ..      . .........|+.+++++|.++.... ..+..+.                                     
T Consensus       302 ~l------~-~~l~~~~~~L~~l~l~~~~l~~~~~-~~l~~~~-------------------------------------  336 (460)
T d1z7xw1         302 LL------C-ETLLEPGCQLESLWVKSCSFTAACC-SHFSSVL-------------------------------------  336 (460)
T ss_dssp             HH------H-HHHTSTTCCCCEEECTTSCCBGGGH-HHHHHHH-------------------------------------
T ss_pred             hh------h-ccccccccccccccccccchhhhhh-hhccccc-------------------------------------
Confidence            00      0 0001234589999999999873221 1111000                                     


Q ss_pred             CccccCCCchhhhhhhhCCCCCCccc----Cccccc-CCCCCCeEeCcCcccccc----CChhccCCCCCCeeeCCCCcc
Q 036049          316 GRMMAYNKIPDILAGIILSNKSFDGA----IPASIS-NLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKF  386 (517)
Q Consensus       316 ~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l  386 (517)
                             .....|++|+|++|.+++.    ++..+. ..+.|++|+|++|.|++.    ++..+..+++|++|+|++|+|
T Consensus       337 -------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         337 -------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             -------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             -------ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcC
Confidence                   0023467778888877642    233333 456799999999998743    445566778999999999998


Q ss_pred             cccCccc----cc-cCCCCCEEeccCCccccc
Q 036049          387 SGRIPQQ----LV-ELTFLAFFNVSDNYLTGL  413 (517)
Q Consensus       387 ~~~~p~~----l~-~l~~L~~L~l~~N~l~~~  413 (517)
                      +......    +. ....|+.|++.+|.+...
T Consensus       410 ~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             CHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            7543322    32 334799999999988744

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-15  Score=140.91  Aligned_cols=251  Identities=18%  Similarity=0.163  Sum_probs=148.0

Q ss_pred             EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCccc-CCccCCCCCCCcEEE
Q 036049           65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGK-VPHSIGNFTRLQFLY  143 (517)
Q Consensus        65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~  143 (517)
                      +|||+++.+......  .+.. ..+..+.++...+..  ......... +|++||+++|.+... ++..+..+++|++|+
T Consensus         4 ~lDLs~~~l~~~~l~--~l~~-~~~~~lrl~~~~~~~--~~~~~~~~~-~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           4 TLDLTGKNLHPDVTG--RLLS-QGVIAFRCPRSFMDQ--PLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             EEECTTCBCCHHHHH--HHHH-TTCSEEECTTCEECS--CCCSCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             EEECCCCCCCchHHH--HHHh-ccceEeecccccccc--chhhhccCC-CCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            678887776432211  1111 134556666554433  122233344 889999988877543 344567888999999


Q ss_pred             ccCCcccccccccccCCccccEEEcccc-ccccc-CchhhhcCCccccccccccc-CcceeccccccccccccccCCCCC
Q 036049          144 LGFNNFSGDLLGSIGNLRSLEAIYMSKC-NFSGQ-ITSSLRNLTELVVLDMAQNS-YGGTMEIEGKVHKWLLDPNMQNLN  220 (517)
Q Consensus       144 Ls~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~l~~L~  220 (517)
                      ++++.+++..+..++.+++|++|++++| .++.. +...+.++++|++|+++++. ++..     .+...+.. ..++|+
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~-----~~~~~~~~-~~~~L~  151 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAH-VSETIT  151 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHH-SCTTCC
T ss_pred             ccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccc-----cchhhhcc-cccccc
Confidence            9999888777888888889999999885 45422 22334578899999998853 3310     11111211 146788


Q ss_pred             eEeccCCc--ccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCc-CCCCCChhhhhcccccceeccCcccccccccCC
Q 036049          221 ALNLSHNL--LTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNR-FTGKLPSKSFLCWNAMKIVNASELRYLQDVLSP  297 (517)
Q Consensus       221 ~L~Ls~n~--l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~  297 (517)
                      .|+++++.  ++.....           .....+++|++|++++|. +++                              
T Consensus       152 ~L~l~~~~~~i~~~~l~-----------~l~~~~~~L~~L~L~~~~~itd------------------------------  190 (284)
T d2astb2         152 QLNLSGYRKNLQKSDLS-----------TLVRRCPNLVHLDLSDSVMLKN------------------------------  190 (284)
T ss_dssp             EEECCSCGGGSCHHHHH-----------HHHHHCTTCSEEECTTCTTCCG------------------------------
T ss_pred             hhhhccccccccccccc-----------ccccccccccccccccccCCCc------------------------------
Confidence            88887642  3221000           001345667777776653 321                              


Q ss_pred             CcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCc-cccccCChhccCCCCC
Q 036049          298 SGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNN-NLQGHIPSCLGNLTNL  376 (517)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L  376 (517)
                                                                 .....+..+++|++|+|++| .+++.....++.+++|
T Consensus       191 -------------------------------------------~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         191 -------------------------------------------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             -------------------------------------------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             -------------------------------------------hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence                                                       12223455678888888885 5666666667788888


Q ss_pred             CeeeCCCCccccc-CccccccCCCCCEEeccCCcccccCC
Q 036049          377 ESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTGLIP  415 (517)
Q Consensus       377 ~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~p  415 (517)
                      ++|+++++ ++.. ++.....+|+|+   +..++++...+
T Consensus       228 ~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~  263 (284)
T d2astb2         228 KTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIAR  263 (284)
T ss_dssp             CEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTC
T ss_pred             CEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCC
Confidence            88888887 3322 222223455554   56677765543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.1e-14  Score=118.42  Aligned_cols=111  Identities=20%  Similarity=0.151  Sum_probs=95.3

Q ss_pred             hhhhhCCCCCCcccCcccccCCCCCCeEeCcCc-cccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049          328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNN-NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS  406 (517)
Q Consensus       328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  406 (517)
                      .+.++.+++.+. ..|..+..+++|++|++++| .|+...+..|.++++|+.|+|++|+|+...+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345677777777 56777888999999999876 5886667789999999999999999998888899999999999999


Q ss_pred             CCcccccCCCCCcCCccCCCcccCCCCCCCCCC
Q 036049          407 DNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPL  439 (517)
Q Consensus       407 ~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~~  439 (517)
                      +|+|+...+.......+..+++++||+.|+|.+
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             CCCCcccChhhhccccccccccCCCcccCCchH
Confidence            999997777666666788999999999998754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=1.3e-14  Score=140.29  Aligned_cols=40  Identities=30%  Similarity=0.465  Sum_probs=29.1

Q ss_pred             CCCCCeEeCcCccccccC----Chhcc-CCCCCCeeeCCCCcccc
Q 036049          349 LKGLQVLNLHNNNLQGHI----PSCLG-NLTNLESLDLSNNKFSG  388 (517)
Q Consensus       349 l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~~L~Ls~N~l~~  388 (517)
                      .+.|++|++++|+|+...    ...+. ++++|+.|+|++|++..
T Consensus       272 ~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            367899999999886432    33332 56789999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=4.3e-14  Score=124.58  Aligned_cols=114  Identities=24%  Similarity=0.286  Sum_probs=69.5

Q ss_pred             CchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhc
Q 036049          104 IQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRN  183 (517)
Q Consensus       104 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  183 (517)
                      ++..+..+. +|++|+|++|+|. .++ .|.++++|++|+|++|.|+ .+|..+..+++|++|++++|.++. + +.+..
T Consensus        40 l~~sl~~L~-~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          40 MDATLSTLK-ACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CHHHHHHTT-TCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             hhhHHhccc-ccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence            455566665 6777777777663 333 4666677777777777766 345444455567777777777663 2 34666


Q ss_pred             CCcccccccccccCcceeccccccc--cccccccCCCCCeEeccCCccccc
Q 036049          184 LTELVVLDMAQNSYGGTMEIEGKVH--KWLLDPNMQNLNALNLSHNLLTGF  232 (517)
Q Consensus       184 l~~L~~L~l~~N~l~~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~  232 (517)
                      +++|++|++++|+++       .++  ..+..  +++|++|++++|.++..
T Consensus       114 l~~L~~L~L~~N~i~-------~~~~~~~l~~--l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         114 LVNLRVLYMSNNKIT-------NWGEIDKLAA--LDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHSSEEEESEEECC-------CHHHHHHHTT--TTTCSEEEECSSHHHHH
T ss_pred             cccccccccccchhc-------cccccccccC--CCccceeecCCCccccC
Confidence            677777777777665       222  12333  66777777777766554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=2.6e-14  Score=126.01  Aligned_cols=40  Identities=15%  Similarity=0.286  Sum_probs=15.7

Q ss_pred             CCCCCCCcEEEccCCcccccccccccCCccccEEEccccccc
Q 036049          133 IGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS  174 (517)
Q Consensus       133 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~  174 (517)
                      +..+++|++|+|++|+|+. ++ .+..+++|++|+|++|.++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC
T ss_pred             HhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc
Confidence            3344444444444444432 11 2333444444444444433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.9e-12  Score=106.49  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=41.7

Q ss_pred             cEEEccCCCCcccCCccCCCCCCCcEEEccCC-cccccccccccCCccccEEEcccccccccCchhhhcCCccccccccc
Q 036049          116 KLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFN-NFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQ  194 (517)
Q Consensus       116 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  194 (517)
                      +.++.+++.+ ...|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+...+.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~-~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGA-LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCC-CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCC-ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            3444554444 234444555555555555433 35544444555555555555555555544445555555555555555


Q ss_pred             ccCc
Q 036049          195 NSYG  198 (517)
Q Consensus       195 N~l~  198 (517)
                      |+++
T Consensus        90 N~l~   93 (156)
T d2ifga3          90 NALE   93 (156)
T ss_dssp             SCCS
T ss_pred             CCCc
Confidence            5444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=4.2e-09  Score=88.74  Aligned_cols=63  Identities=16%  Similarity=0.070  Sum_probs=27.3

Q ss_pred             CCCCcEEEccCCccccc--ccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049          136 FTRLQFLYLGFNNFSGD--LLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG  198 (517)
Q Consensus       136 l~~L~~L~Ls~n~i~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~  198 (517)
                      +++|++|+|++|+|+..  ++..+..+++|+.|+|++|.|+...+-.+....+|++|++++|.+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            44444444444444422  1223344455555555555554322222223334555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5e-09  Score=88.26  Aligned_cols=106  Identities=18%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccC--chhhhcCCcccccc
Q 036049          114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI--TSSLRNLTELVVLD  191 (517)
Q Consensus       114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~  191 (517)
                      ..+.|++++...   .+ .+..+..+..++..++.+. .++..+..+++|++|+|++|+|+...  +..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~---~~-~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRS---DP-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSS---CT-TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCC---Cc-hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            344455554432   11 2333444444444444333 34444456777777777777776432  34466677777777


Q ss_pred             cccccCcceeccccccccccccccCCCCCeEeccCCccccc
Q 036049          192 MAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF  232 (517)
Q Consensus       192 l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  232 (517)
                      +++|.++       .+++.... ....|++|++++|.++..
T Consensus        98 Ls~N~i~-------~l~~l~~l-~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          98 LSGNELK-------SERELDKI-KGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CTTSCCC-------CGGGHHHH-TTCCCSSCCCTTSTTSSS
T ss_pred             cccCccc-------cchhhhhh-hccccceeecCCCCcCcC
Confidence            7777776       33321111 144677777777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=3.4e-06  Score=70.71  Aligned_cols=37  Identities=19%  Similarity=0.106  Sum_probs=16.2

Q ss_pred             CCCCcEEEccCCccccc----ccccccCCccccEEEccccc
Q 036049          136 FTRLQFLYLGFNNFSGD----LLGSIGNLRSLEAIYMSKCN  172 (517)
Q Consensus       136 l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~  172 (517)
                      .+.|++|+|++|.++..    +..++...+.|++|++++|.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34455555555554432    11223333445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=3.9e-06  Score=70.32  Aligned_cols=65  Identities=12%  Similarity=0.075  Sum_probs=38.1

Q ss_pred             CCCCCCCcEEEccCCcccccc----cccccCCccccEEEccccccccc----CchhhhcCCcccccccccccC
Q 036049          133 IGNFTRLQFLYLGFNNFSGDL----LGSIGNLRSLEAIYMSKCNFSGQ----ITSSLRNLTELVVLDMAQNSY  197 (517)
Q Consensus       133 ~~~l~~L~~L~Ls~n~i~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~N~l  197 (517)
                      +...++|++|+|++|.+....    ...+...+.|++|+|++|.++..    +...+...++|++|++++|.+
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            445566777777777665322    23344556777888887777632    223344556666666666644

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.21  E-value=4e-05  Score=63.83  Aligned_cols=11  Identities=36%  Similarity=0.130  Sum_probs=5.5

Q ss_pred             CCCCCEEEcCC
Q 036049           86 LVHLEWLNLAL   96 (517)
Q Consensus        86 l~~L~~L~Ls~   96 (517)
                      .+.|++|+|++
T Consensus        16 ~~~L~~L~L~~   26 (166)
T d1io0a_          16 DPDLEEVNLNN   26 (166)
T ss_dssp             CTTCCEEECTT
T ss_pred             CCCCcEEEcCC
Confidence            34555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.15  E-value=6.1e-05  Score=62.65  Aligned_cols=85  Identities=12%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             cCCcEEEccC-CCCccc----CCccCCCCCCCcEEEccCCcccccc----cccccCCccccEEEccccccccc----Cch
Q 036049          113 CSLKLLDLRS-CGFWGK----VPHSIGNFTRLQFLYLGFNNFSGDL----LGSIGNLRSLEAIYMSKCNFSGQ----ITS  179 (517)
Q Consensus       113 ~~L~~L~Ls~-n~l~~~----~p~~~~~l~~L~~L~Ls~n~i~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~p~  179 (517)
                      +.|++|+|++ +.++..    +-..+...++|++|++++|.++...    ...+...+.++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            3778888876 345321    2233456677777777777776432    22344556777777777766522    223


Q ss_pred             hhhcCCcccccc--cccccC
Q 036049          180 SLRNLTELVVLD--MAQNSY  197 (517)
Q Consensus       180 ~l~~l~~L~~L~--l~~N~l  197 (517)
                      .+...++|+.++  +++|.+
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCC
T ss_pred             HHHhCccccEEeeccCCCcC
Confidence            444556665433  334444