Citrus Sinensis ID: 036052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTDGN
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccccccccccccEEEEccccccccccccccccccccccccccEEEEccHHHHHHHHHHccccEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHcEEEEEEccccccccccccccEEEEEccccccccccccccccccccHHHccccEEEEccHHHHHHHHHHcccEEEEEcccccccccccHHHccccccccccccc
Coil and Loop (DISEMBL)
mvsgipeehlRRRVVIytpartatqqgsgkigRWKINFMSkqkwenplmgwtstgdpyanvgdaglsfdSEEAAREFAERHGweyvvrkphrpllnvksyaehfkwkgppktdgn
Flexible Loop (DISEMBL)
mvsgipeehlrrrvviytpartatqqgsgkigrwKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAErhgweyvvrkphrpllnvksyaehfkwkgppktdgn
Low Complexity Region (SEG)
MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTDGN
Disordered region (IsUnstruct)
***********RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFD***AAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW*********
Disordered Region (DISOPRED)
*VSGIP*EHLRRRVVIYTPA************RWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHF***********
Disordered Region (DISEMBL)
MVSGIPEEHLRRRVVIYTPAR*********IGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWK********
Disordered Region (DISPRO)
**SGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTDGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q9FJW4	154	NADH dehydrogenase [ubiqu	yes	no	0.956	0.714	0.763	3e-48
Q5XIF3	175	NADH dehydrogenase [ubiqu	yes	no	0.886	0.582	0.443	3e-21
O43181	175	NADH dehydrogenase [ubiqu	yes	no	0.886	0.582	0.424	1e-20
Q0MQH0	175	NADH dehydrogenase [ubiqu	N/A	no	0.886	0.582	0.424	1e-20
Q66XS7	175	NADH dehydrogenase [ubiqu	N/A	no	0.886	0.582	0.424	1e-20
P0CB96	175	NADH dehydrogenase [ubiqu	N/A	no	0.886	0.582	0.433	1e-20
P0CB95	175	NADH dehydrogenase [ubiqu	yes	no	0.886	0.582	0.433	1e-20
Q02375	175	NADH dehydrogenase [ubiqu	yes	no	0.886	0.582	0.424	1e-20
Q0MQH1	175	NADH dehydrogenase [ubiqu	yes	no	0.886	0.582	0.415	9e-20
Q9CXZ1	175	NADH dehydrogenase [ubiqu	yes	no	0.886	0.582	0.433	2e-19

>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 100/110 (90%)

Query: 2   VSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANV 61
           VSGIPEEHL R+V+IY+PARTATQ GSGK+G+WKINF+S  KWENPLMGWTSTGDPYANV
Sbjct: 42  VSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANV 101

Query: 62  GDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPK 111
           GD+ L+FDSEEAA+ FAERHGW+Y V+KP+ PLL VKSY+++FKWKG P+
Sbjct: 102 GDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQ 151

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64  LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+F ++E A  FAE+HGW Y V     P    KSY  +F W
Sbjct: 124 M---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64  LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+F ++E A  FAE++GW Y + +   P    KSY  +F W
Sbjct: 124 M---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64  LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+F ++E A  FAE++GW Y + +   P    KSY  +F W
Sbjct: 124 M---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW+ST DP +N
Sbjct: 64  LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+F ++E A  FAE++GW + V +   P    KSY  +F W
Sbjct: 124 L---VLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gecko japonicus (taxid: 146911)

>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64  LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+F ++E A  FAE++GW Y V +   P    KSY  +F W
Sbjct: 124 M---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64  LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+F ++E A  FAE++GW Y V +   P    KSY  +F W
Sbjct: 124 M---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+  I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64  ITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+F ++E A  FAE++GW Y V +   P    KSY  +F W
Sbjct: 124 L---VLTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64  LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+  ++E A  FAE++GW Y + +   P    KSY  +F W
Sbjct: 124 M---VLTXSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 2   VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64  LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
           +    L+F ++E A  FAE++GW Y V +   P    KSY  +F W
Sbjct: 124 M---VLTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
255568613	159	NADH-ubiquinone oxidoreductase 18 kDa su	1.0	0.723	0.860	5e-54
225438227	154	PREDICTED: NADH dehydrogenase [ubiquinon	0.982	0.733	0.831	2e-51
296088915	114	unnamed protein product [Vitis vinifera]	0.982	0.991	0.831	2e-51
388512277	152	unknown [Lotus japonicus]	0.991	0.75	0.807	3e-51
351726439	146	uncharacterized protein LOC100526873 [Gl	0.973	0.767	0.803	5e-51
357122195	158	PREDICTED: NADH dehydrogenase [ubiquinon	0.982	0.715	0.814	1e-50
351723021	146	uncharacterized protein LOC100306371 [Gl	0.973	0.767	0.803	2e-50
326492291	158	predicted protein [Hordeum vulgare subsp	0.982	0.715	0.805	2e-50
115473055	159	Os07g0585800 [Oryza sativa Japonica Grou	0.982	0.710	0.796	2e-50
195642452	157	NADH-ubiquinone oxidoreductase 18 kDa su	0.982	0.719	0.796	9e-50

>gi|255568613|ref|XP_002525280.1| NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis] gi|223535438|gb|EEF37108.1| NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 99/115 (86%), Positives = 109/115 (94%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIP+EHLRRRVVIY+PARTATQQGSGK+GRWKINFMS QKWENPLMGWTSTGDPYAN
Sbjct: 45  MVSGIPQEHLRRRVVIYSPARTATQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYAN 104

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTDGN 115
           VGD+ LSFDSEEAA+EFAERHGWEYVV+K H PLL VKSYA++FK+KG PKT+GN
Sbjct: 105 VGDSALSFDSEEAAKEFAERHGWEYVVKKRHTPLLKVKSYADNFKFKGLPKTEGN 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438227|ref|XP_002265704.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Vitis vinifera] gi|147858131|emb|CAN83933.1| hypothetical protein VITISV_035766 [Vitis vinifera]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 104/113 (92%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIPEEHLRRRVVI++PARTATQQGSGK+GRWKINFMS QKWENPLMGWTSTGDPYAN
Sbjct: 41  MVSGIPEEHLRRRVVIFSPARTATQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYAN 100

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTD 113
           VGDAGL FDSEEAA+ FAE+HGWEY V+K   PLL  K+YA++FKWKGPPKT+
Sbjct: 101 VGDAGLGFDSEEAAKAFAEKHGWEYTVKKRQTPLLKTKAYADNFKWKGPPKTE 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|296088915|emb|CBI38470.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 104/113 (92%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIPEEHLRRRVVI++PARTATQQGSGK+GRWKINFMS QKWENPLMGWTSTGDPYAN
Sbjct: 1   MVSGIPEEHLRRRVVIFSPARTATQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYAN 60

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTD 113
           VGDAGL FDSEEAA+ FAE+HGWEY V+K   PLL  K+YA++FKWKGPPKT+
Sbjct: 61  VGDAGLGFDSEEAAKAFAEKHGWEYTVKKRQTPLLKTKAYADNFKWKGPPKTE 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512277|gb|AFK44200.1| unknown [Lotus japonicus]

 Score =  205 bits (521), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 104/114 (91%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIP+EHL RRVVIY+PARTA+QQGSGK+GRWKINF+S QKWENPLMGWTSTGDPYA+
Sbjct: 38  MVSGIPQEHLHRRVVIYSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYAH 97

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTDG 114
           VGD+ LSFDS EAA+ F E+HGWEYVV+KPH PLL VKSYA++FKWKG PK DG
Sbjct: 98  VGDSALSFDSAEAAKAFTEKHGWEYVVKKPHTPLLKVKSYADNFKWKGLPKVDG 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726439|ref|NP_001235335.1| uncharacterized protein LOC100526873 [Glycine max] gi|255631034|gb|ACU15881.1| unknown [Glycine max]

 Score =  204 bits (519), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 106/112 (94%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIP+EHLRRRVVIY+PARTA+QQGSGK+G+WKINF+S QKWENPLMGWTSTGDPY++
Sbjct: 32  MVSGIPQEHLRRRVVIYSPARTASQQGSGKVGKWKINFLSTQKWENPLMGWTSTGDPYSH 91

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKT 112
           VGD+ L+FDSEEAA+ FAE+HGWEY V+KPH PLL VKSYA++FKWKGPPK+
Sbjct: 92  VGDSALTFDSEEAAKAFAEKHGWEYSVKKPHTPLLKVKSYADNFKWKGPPKS 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122195|ref|XP_003562801.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Brachypodium distachyon]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 106/113 (93%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIPEEHLRRRVVIY+PARTA+QQGSGK+GRWKINF+S QKWENPLMGWTSTGDPYAN
Sbjct: 43  MVSGIPEEHLRRRVVIYSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYAN 102

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTD 113
           VG+AGL+FDS ++A+ FAE+HGW+YVVRK H PLL  K+YAE+FKWKGPPKT+
Sbjct: 103 VGEAGLTFDSADSAKAFAEKHGWDYVVRKRHTPLLKPKTYAENFKWKGPPKTE 155

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

>gi|351723021|ref|NP_001237776.1| uncharacterized protein LOC100306371 [Glycine max] gi|255628331|gb|ACU14510.1| unknown [Glycine max]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 105/112 (93%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIPEEHLRRRV+IY+PARTA+QQGSGK+GRWKINF+S QKWENPLMGWTSTGDPY++
Sbjct: 32  MVSGIPEEHLRRRVLIYSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYSH 91

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKT 112
           VGD+ L+FDSE+AA+ FAERHGWEY V+KPH PLL VKSYA++FKWK PPK+
Sbjct: 92  VGDSALTFDSEQAAKAFAERHGWEYSVKKPHTPLLKVKSYADNFKWKDPPKS 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492291|dbj|BAK01929.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 106/113 (93%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIPEEHLRR+V+IY+PARTA+QQGSGK+GRWKINF+S QKWENPLMGWTSTGDPYAN
Sbjct: 43  MVSGIPEEHLRRKVLIYSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYAN 102

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTD 113
           VG+AGL+FDS E+A+ FA++HGWEYVVRK H PLL  K+YAE+FKWKGPPKT+
Sbjct: 103 VGEAGLTFDSAESAKAFADKHGWEYVVRKRHTPLLKPKTYAENFKWKGPPKTE 155

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115473055|ref|NP_001060126.1| Os07g0585800 [Oryza sativa Japonica Group] gi|50509945|dbj|BAD30267.1| NADH-ubiquinone oxidoreductase-related-like protein [Oryza sativa Japonica Group] gi|113611662|dbj|BAF22040.1| Os07g0585800 [Oryza sativa Japonica Group] gi|218199922|gb|EEC82349.1| hypothetical protein OsI_26657 [Oryza sativa Indica Group] gi|222637356|gb|EEE67488.1| hypothetical protein OsJ_24916 [Oryza sativa Japonica Group]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 105/113 (92%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIPEEHLRR+VVIY+PARTA+QQGSGK+GRWKINF+S QKWENPLMGWTSTGDPYAN
Sbjct: 45  MVSGIPEEHLRRKVVIYSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYAN 104

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTD 113
           VG+AGL+FDS ++A+ FAE+HGW+YVVRK H PLL  KSYAE+FKW+GPPK +
Sbjct: 105 VGEAGLTFDSADSAKAFAEKHGWDYVVRKRHTPLLKAKSYAENFKWRGPPKAE 157

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195642452|gb|ACG40694.1| NADH-ubiquinone oxidoreductase 18 kDa subunit [Zea mays]

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 104/113 (92%)

Query: 1   MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
           MVSGIPEEHLRR+VVIY+PARTA+QQGSGK+GRWKINF+S QKWENPLMGWTSTGDPYAN
Sbjct: 43  MVSGIPEEHLRRKVVIYSPARTASQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYAN 102

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTD 113
           VG+AGL+F+S E+A+ FAE+HGW YVVRK H PLL  K+YAE+FKWKGPPK +
Sbjct: 103 VGEAGLTFNSAESAKAFAEKHGWNYVVRKRHTPLLKPKAYAENFKWKGPPKAE 155

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2158621	154	FRO1 "FROSTBITE1" [Arabidopsis	0.973	0.727	0.75	1.1e-46
ZFIN|ZDB-GENE-050522-421	168	ndufs4 "NADH dehydrogenase (ub	0.886	0.607	0.452	7.8e-23
UNIPROTKB|Q8QGH0	116	NDUFS4 "NADH dehydrogenase" [G	0.886	0.879	0.443	7e-22
RGD|1594380	175	Ndufs4 "NADH dehydrogenase (ub	0.886	0.582	0.443	1.1e-21
FB|FBgn0031021	183	CG12203 [Drosophila melanogast	0.886	0.557	0.439	2.4e-21
MGI|MGI:1343135	175	Ndufs4 "NADH dehydrogenase (ub	0.886	0.582	0.433	2.4e-21
UNIPROTKB|J9PB72	175	NDUFS4 "Uncharacterized protei	0.886	0.582	0.424	3e-21
UNIPROTKB|O43181	175	NDUFS4 "NADH dehydrogenase [ub	0.886	0.582	0.424	3e-21
UNIPROTKB|Q0MQH0	175	NDUFS4 "NADH dehydrogenase [ub	0.886	0.582	0.424	3e-21
UNIPROTKB|P0CB95	175	NDUFS4 "NADH dehydrogenase [ub	0.886	0.582	0.433	3.9e-21

TAIR|locus:2158621 FRO1 "FROSTBITE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 84/112 (75%), Positives = 101/112 (90%)

Query:     2 VSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANV 61
             VSGIPEEHL R+V+IY+PARTATQ GSGK+G+WKINF+S  KWENPLMGWTSTGDPYANV
Sbjct:    42 VSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANV 101

Query:    62 GDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTD 113
             GD+ L+FDSEEAA+ FAERHGW+Y V+KP+ PLL VKSY+++FKWKG P+ +
Sbjct:   102 GDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQPE 153

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-050522-421 ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 48/106 (45%), Positives = 72/106 (67%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             ++G+PEEH++ R+V I+ PAR A Q G     +WKI+F ++++WENPLMGW+ST DP +N
Sbjct:    57 LTGVPEEHIKTRKVRIFVPARNAMQSGVKNTHKWKIDFDTRERWENPLMGWSSTADPLSN 116

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +    L+F ++E A  FAE++GW Y + +   P   VKSY  +F W
Sbjct:   117 MV---LTFSTKEDAIAFAEKNGWSYDITEKRVPKPRVKSYGANFSW 159

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|Q8QGH0 NDUFS4 "NADH dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 47/106 (44%), Positives = 69/106 (65%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             ++G+P+EH++ RRV I+ PAR A Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct:     5 LTGVPDEHIKTRRVHIFVPARNAMQAGVNNTKKWKMEFDNRERWENPLMGWASTADPLSN 64

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +    L+F ++E A  FAE++GW Y V +   P    KSY  +F W
Sbjct:    65 MV---LTFSTKEDAIAFAEKNGWNYDVEEKKIPKPKSKSYGANFSW 107

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

RGD|1594380 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 47/106 (44%), Positives = 67/106 (63%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct:    64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +    L+F ++E A  FAE+HGW Y V     P    KSY  +F W
Sbjct:   124 MV---LTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166

GO:0001932 "regulation of protein phosphorylation" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA;ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0045333 "cellular respiration" evidence=IEA;ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0051591 "response to cAMP" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

FB|FBgn0031021 CG12203 [Drosophila melanogaster (taxid:7227)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 47/107 (43%), Positives = 68/107 (63%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             +SG+PEEH+R RRV I+ P + A Q G+  +  W+I F ++++WENPLMGW S+GDP +N
Sbjct:    71 ISGVPEEHIRERRVRIHIPPKNAMQSGTDNVNTWQIEFDNRERWENPLMGWASSGDPLSN 130

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLN-VKSYAEHFKW 106
             +    + F S E A  F ER+GW + V    +P    VK+Y  +F W
Sbjct:   131 MN---VQFGSPEEAITFCERNGWRWYVDGAAKPKKERVKNYGINFAW 174

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0022900 "electron transport chain" evidence=IEA

MGI|MGI:1343135 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Mus musculus (taxid:10090)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 46/106 (43%), Positives = 68/106 (64%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct:    64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +    L+F ++E A  FAE++GW Y V +   P    KSY  +F W
Sbjct:   124 MV---LTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166

GO:0001932 "regulation of protein phosphorylation" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0045271 "respiratory chain complex I" evidence=ISO

GO:0045333 "cellular respiration" evidence=ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISO

GO:0051591 "response to cAMP" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070469 "respiratory chain" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|J9PB72 NDUFS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 45/106 (42%), Positives = 68/106 (64%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct:    64 LTGVPEEHIKTRKVRIFVPARDNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +    L+F ++E A  FAE++GW Y + +   P    KSY  +F W
Sbjct:   124 MV---LTFSTKEDAAAFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

GO:0022900 "electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|O43181 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 45/106 (42%), Positives = 68/106 (64%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct:    64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +    L+F ++E A  FAE++GW Y + +   P    KSY  +F W
Sbjct:   124 MV---LTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IMP

GO:0051591 "response to cAMP" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;IMP

GO:0045333 "cellular respiration" evidence=IMP

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q0MQH0 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 45/106 (42%), Positives = 68/106 (64%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct:    64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +    L+F ++E A  FAE++GW Y + +   P    KSY  +F W
Sbjct:   124 MV---LTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|P0CB95 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 46/106 (43%), Positives = 68/106 (64%)

Query:     2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
             ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F ++++WENPLMGW ST DP +N
Sbjct:    64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123

Query:    61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +    L+F ++E A  FAE++GW Y V +   P    KSY  +F W
Sbjct:   124 MV---LTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJW4	NDUS4_ARATH	No assigned EC number	0.7636	0.9565	0.7142	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
pfam04800	101	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit co	1e-38

>gnl|CDD|218273 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region

 Score =  124 bits (314), Expect = 1e-38
 Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 2/100 (2%)

Query: 12  RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSE 71
           R   IY PAR A Q G  +  +W + F    +WENPLMGWTSTGDP +N  +  L+F ++
Sbjct: 1   RTARIYRPARNAMQSGRARTKKWTLEFDRSARWENPLMGWTSTGDPLSNQME--LTFPTK 58

Query: 72  EAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPK 111
           EAA  FAER GWEY V +P+ P    K+Y+++F W    +
Sbjct: 59  EAAIAFAERQGWEYDVEEPNAPKAKPKAYSDNFSWNRRTR 98

Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	100.0
KOG3389	178	consensus NADH:ubiquinone oxidoreductase, NDUFS4/1	100.0
PF09954	62	DUF2188: Uncharacterized protein conserved in bact	86.43
PHA02552	151	4 head completion protein; Provisional	83.66
PF05573	149	NosL: NosL; InterPro: IPR008719 NosL is one of the	82.02
PRK05370	447	argininosuccinate synthase; Validated	81.2

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=100.00  E-value=7.6e-54  Score=302.61  Aligned_cols=96  Identities=46%  Similarity=0.968  Sum_probs=60.8

Q ss_pred             CeEEEecCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCccCCCCcccc-cCCceeecCCHHHHHHHHHHcCccEEEecC
Q 036052           12 RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN-VGDAGLSFDSEEAAREFAERHGWEYVVRKP   90 (115)
Q Consensus        12 r~vrIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q-v~~~~l~F~skE~Ai~yaek~G~~y~V~~p   90 (115)
                      |+||||+|+|+|||||++++++|+|||+..++|+|||||||||+||++| |   +|+|+|+||||+|||+|||+|+|++|
T Consensus         1 r~arIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v---~l~F~skE~Ai~yaer~G~~Y~V~~p   77 (101)
T PF04800_consen    1 RKARIYQPAKNAMQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSV---RLKFDSKEDAIAYAERNGWDYEVEEP   77 (101)
T ss_dssp             -EEEEE--SS--STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-C---EEEESSHHHHHHHHHHCT-EEEEE-S
T ss_pred             CeEEEeCCCCCCCCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCee---EeeeCCHHHHHHHHHHcCCeEEEeCC
Confidence            6899999999999999999999999999889999999999999999998 8   99999999999999999999999999


Q ss_pred             CCCcCCCccccccCCCCCCC
Q 036052           91 HRPLLNVKSYAEHFKWKGPP  110 (115)
Q Consensus        91 ~~~~~~~ksYadNF~~~~~~  110 (115)
                      +.++.++|||||||+|+++.
T Consensus        78 ~~r~~~~ksY~dNF~~~r~~   97 (101)
T PF04800_consen   78 KKRKRRPKSYADNFSWNRRT   97 (101)
T ss_dssp             TT------------------
T ss_pred             CCCcCCcccHHHhCCcCCCC
Confidence            99999999999999999864

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]

Probab=100.00  E-value=6.7e-53  Score=316.70  Aligned_cols=111  Identities=58%  Similarity=1.135  Sum_probs=107.3

Q ss_pred             CCCCccccc-CCeEEEecCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCccCCCCcccccCCceeecCCHHHHHHHHHH
Q 036052            2 VSGIPEEHL-RRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAER   80 (115)
Q Consensus         2 vsg~P~~~~-~r~vrIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~qv~~~~l~F~skE~Ai~yaek   80 (115)
                      |+|+|+||+ .|+||||+|+|++||||.++++.|+|||+.+.+|+||||||+|++|||++|+ +.|.|+|+|||++||||
T Consensus        65 v~GvPeeH~~sRkvrIf~PAR~~tQSg~gntkkWkiefd~r~rWENPLMGWtsTaDPlsNvg-m~L~F~tkEdA~sFaEk  143 (178)
T KOG3389|consen   65 VSGVPEEHLDSRKVRIFSPARTATQSGSGNTKKWKIEFDSRLRWENPLMGWTSTADPLSNVG-MALAFDTKEDAKSFAEK  143 (178)
T ss_pred             ccCCChHHhcceeEEEecchhhhhhcccCCccceEEEecchhhccCccccccccCCcccccc-eeeeeccHHHHHHHHHH
Confidence            799999999 6999999999999999999999999999999999999999999999999997 58999999999999999


Q ss_pred             cCccEEEecCCCCcCCCccccccCCCCCCCCCC
Q 036052           81 HGWEYVVRKPHRPLLNVKSYAEHFKWKGPPKTD  113 (115)
Q Consensus        81 ~G~~y~V~~p~~~~~~~ksYadNF~~~~~~~~~  113 (115)
                      |||+|.|++|+.++.++||||+||+|||++.-+
T Consensus       144 ngW~ydveep~~pk~K~KsYg~NFsWn~rtr~~  176 (178)
T KOG3389|consen  144 NGWDYDVEEPNTPKLKVKSYGDNFSWNGRTRPE  176 (178)
T ss_pred             cCCcccccCCCCCccccccccccccccCCCCCC
Confidence            999999999999999999999999999998654

>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function

Probab=86.43  E-value=0.58  Score=29.42  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=22.5

Q ss_pred             eeecCCHHHHHHHHHH----c-CccEEEecCCCCcCCCcc
Q 036052           65 GLSFDSEEAAREFAER----H-GWEYVVRKPHRPLLNVKS   99 (115)
Q Consensus        65 ~l~F~skE~Ai~yaek----~-G~~y~V~~p~~~~~~~ks   99 (115)
                      ...|+|+++||++|++    + +-+..|....-+.....|
T Consensus        22 ~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~i~~~~s   61 (62)
T PF09954_consen   22 SKTFDTKAEAIEAARELAKNQGGGELIIHGRDGKIREERS   61 (62)
T ss_pred             ccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCeEEEeec
Confidence            5689999999998764    4 566666554433333333

>PHA02552 4 head completion protein; Provisional

Probab=83.66  E-value=1.1  Score=33.95  Aligned_cols=69  Identities=19%  Similarity=0.263  Sum_probs=41.1

Q ss_pred             CeEEEecCCCCC-CCCCCCCCCCcEEEccCCCCCCCCCCCccCCCCcccccCCceeecC-----------CHHHHHHHHH
Q 036052           12 RRVVIYTPARTA-TQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFD-----------SEEAAREFAE   79 (115)
Q Consensus        12 r~vrIy~pak~a-mQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~qv~~~~l~F~-----------skE~Ai~yae   79 (115)
                      .++|.|-|.=-+ +..|    ....+|..+.....+|.+-  ..-|+.+     ...|.           --++|.+||+
T Consensus        60 Gk~r~Y~PDFLV~~~dG----~~~lvEVKp~~~~~~p~~~--~~~~~~~-----~~~~~~~~~~w~~~~~K~~Aa~~~a~  128 (151)
T PHA02552         60 GKRRRYFMDFYVKVDNG----QKFLIEVKPKKETQPPKKP--AKMTTAA-----KKRFINEVYTWSVNTDKWKAARALCE  128 (151)
T ss_pred             CCeeeEcCcEEEEEeCC----CEEEEEEccHHHccCcccc--cccchhh-----hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            456777776333 1233    4678888887666666442  1111100     11222           2478999999


Q ss_pred             HcCccEEEecCC
Q 036052           80 RHGWEYVVRKPH   91 (115)
Q Consensus        80 k~G~~y~V~~p~   91 (115)
                      ++||.|.|....
T Consensus       129 ~~Gw~F~iiTE~  140 (151)
T PHA02552        129 KKGWKFKIITED  140 (151)
T ss_pred             HcCCEEEEEEHH
Confidence            999999987644

>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster

Probab=82.02  E-value=1.5  Score=32.10  Aligned_cols=51  Identities=25%  Similarity=0.565  Sum_probs=29.0

Q ss_pred             CCCcEEEccCCCCCCCCCC-CccCC--------CCcccccCCceeecCCHHHHHHHHHHcC
Q 036052           31 IGRWKINFMSKQKWENPLM-GWTST--------GDPYANVGDAGLSFDSEEAAREFAERHG   82 (115)
Q Consensus        31 t~~W~lefe~~~~~~~PLM-GWtss--------~D~~~qv~~~~l~F~skE~Ai~yaek~G   82 (115)
                      ...|+-+|.. ..|.+|-- -|...        +|-.+-++..-+-|.++++|.+|++++|
T Consensus        76 ~~~~V~D~~~-~~~~~p~~~~~Ida~~A~yV~gs~~~~pMg~~~~aF~~~~~A~~F~~~~G  135 (149)
T PF05573_consen   76 AAIYVTDYST-TDWDQPGDGEWIDAKKAYYVVGSDVRGPMGPDLIAFASKEDAEAFAKEHG  135 (149)
T ss_dssp             EEEEEEES-T-S-TT-S---EEEEGGGSEEEEESSSS-TTS--EEEES-HHHHHHHHHHTE
T ss_pred             cEEEEEeccc-ccccCCCCCceEEcceEEEEECCCcCCCCCCcccccCCHHHHHHHHHHcC
Confidence            3668888887 55555542 34333        2222233334678999999999999997

NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.

>PRK05370 argininosuccinate synthase; Validated

Probab=81.20  E-value=1.5  Score=38.49  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             eecCCHHHHHHHHHHcCccEEE
Q 036052           66 LSFDSEEAAREFAERHGWEYVV   87 (115)
Q Consensus        66 l~F~skE~Ai~yaek~G~~y~V   87 (115)
                      -.|+|+++.|+||++||++..+
T Consensus       164 ~~f~sR~e~i~Ya~~hGIpv~~  185 (447)
T PRK05370        164 DELGGRAEMSEFLIAHGFDYKM  185 (447)
T ss_pred             cccCCHHHHHHHHHHcCCCCCc
Confidence            3689999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
2jya_A	106	Nmr Solution Structure Of Protein Atu1810 From Agro		2e-10
2lju_A	108	Solution Structure Of Putative Oxidoreductase From		6e-09

>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr23, Ontario Centre For Structural Proteomics Target Atc1776 Length = 106

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 16  IYTPARTATQQGSGKIGRWKINFMSKQ-KWENPLMGWTSTGDPYANVGDAGLSFDSEEAA 74
           IY PA+TA Q G+ K   W + F ++  +  +P+MG+TS+ D    V    L+F+++E A
Sbjct: 8   IYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFETQEQA 64
Query: 75  REFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
             +A+R G EY V  P      V SY ++F++
Sbjct: 65  EAYAQRKGIEYRVILPKEATRKVVSYTDNFRF 96

>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From Ehrlichia Chaffeensis, Seattle Structural Genomics Center For Infectious Disease (Ssgcid) Length = 108

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 13  RVVIYTPARTATQQGSGKIGRWKINFM-SKQKWENPLMGWTSTGDPYANVGDAGLSFDSE 71
           R  IY PA++  Q G  K+  WK+ F  S  ++  PLM WT + D    V    LSF + 
Sbjct: 13  RARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTR 69
Query: 72  EAAREFAERHGWEYVVRKPHRPLLNVKSYAEHF 104
           E A  +A  H  +Y V + +   +  KSYA++F
Sbjct: 70  ELAIAYAVAHKIDYTVLQDNPRTIVPKSYADNF 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
2lju_A	108	Putative oxidoreductase; structural genomics, seat	2e-35
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	2e-33

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis} Length = 108

 Score =  115 bits (291), Expect = 2e-35
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 3   SGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFM-SKQKWENPLMGWTSTGDPYAN 60
            G  +E +   R  IY PA++  Q G  K+  WK+ F  S  ++  PLM WT + D    
Sbjct: 2   PGSMQEQVSNVRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQ 61

Query: 61  VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWK 107
           V    LSF + E A  +A  H  +Y V + +   +  KSYA++F   
Sbjct: 62  VC---LSFTTRELAIAYAVAHKIDYTVLQDNPRTIVPKSYADNFTKP 105

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str} Length = 106

 Score =  111 bits (279), Expect = 2e-33
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 12  RRVVIYTPARTATQQGSGKIGRWKINFMSKQ-KWENPLMGWTSTGDPYANVGDAGLSFDS 70
               IY PA+TA Q G+ K   W + F ++  +  +P+MG+TS+ D    V    L+F++
Sbjct: 4   MSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFET 60

Query: 71  EEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWK 107
           +E A  +A+R G EY V  P      V SY ++F++ 
Sbjct: 61  QEQAEAYAQRKGIEYRVILPKEATRKVVSYTDNFRFN 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2lju_A	108	Putative oxidoreductase; structural genomics, seat	100.0
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	87.43
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	82.67
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	82.63

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=100.00  E-value=7.8e-55  Score=309.85  Aligned_cols=95  Identities=34%  Similarity=0.589  Sum_probs=92.3

Q ss_pred             CeEEEecCCCCCCCCCCCCCCCcEEEccCC-CCCCCCCCCccCCCCcccccCCceeecCCHHHHHHHHHHcCccEEEecC
Q 036052           12 RRVVIYTPARTATQQGSGKIGRWKINFMSK-QKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKP   90 (115)
Q Consensus        12 r~vrIy~pak~amQSG~~~t~~W~lefe~~-~~~~~PLMGWtss~D~~~qv~~~~l~F~skE~Ai~yaek~G~~y~V~~p   90 (115)
                      ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+|||+|||+|+|++|
T Consensus        12 ~~arIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~ep   88 (108)
T 2lju_A           12 VRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYAVAHKIDYTVLQD   88 (108)
T ss_dssp             CEEEEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEecC
Confidence            789999999999999999999999999996 59999999999999999999   99999999999999999999999999


Q ss_pred             CCCcCCCccccccCCCCCC
Q 036052           91 HRPLLNVKSYAEHFKWKGP  109 (115)
Q Consensus        91 ~~~~~~~ksYadNF~~~~~  109 (115)
                      +.+++++|||||||+|+++
T Consensus        89 ~~~~~r~ksYadNF~~~r~  107 (108)
T 2lju_A           89 NPRTIVPKSYADNFTKPRD  107 (108)
T ss_dssp             SCCCCCCCCCCCCCCCCCC
T ss_pred             CcccCCcCchHHHCCccCC
Confidence            9999999999999999975

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=100.00  E-value=4e-54  Score=305.35  Aligned_cols=95  Identities=35%  Similarity=0.637  Sum_probs=77.2

Q ss_pred             CeEEEecCCCCCCCCCCCCCCCcEEEccCC-CCCCCCCCCccCCCCcccccCCceeecCCHHHHHHHHHHcCccEEEecC
Q 036052           12 RRVVIYTPARTATQQGSGKIGRWKINFMSK-QKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKP   90 (115)
Q Consensus        12 r~vrIy~pak~amQSG~~~t~~W~lefe~~-~~~~~PLMGWtss~D~~~qv~~~~l~F~skE~Ai~yaek~G~~y~V~~p   90 (115)
                      .+||||+|+|+|||||++++++|+||||+. ++|+|||||||||+||++||   +|+|+|+|+||+|||+|||+|+|++|
T Consensus         4 m~arIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~ep   80 (106)
T 2jya_A            4 MSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYRVILP   80 (106)
T ss_dssp             CEEEEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEEECCC
T ss_pred             cEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEeCC
Confidence            579999999999999999999999999996 79999999999999999999   99999999999999999999999999


Q ss_pred             CCCcCCCccccccCCCCCC
Q 036052           91 HRPLLNVKSYAEHFKWKGP  109 (115)
Q Consensus        91 ~~~~~~~ksYadNF~~~~~  109 (115)
                      +.+++++|||||||+|+.+
T Consensus        81 ~~~~~r~ksYadNF~~~r~   99 (106)
T 2jya_A           81 KEATRKVVSYTDNFRFNRT   99 (106)
T ss_dssp             TTC----------------
T ss_pred             CcCcCCcCchHHhCCcCCC
Confidence            9999999999999999865

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=87.43  E-value=0.26  Score=37.27  Aligned_cols=21  Identities=24%  Similarity=0.610  Sum_probs=19.6

Q ss_pred             eeecCCHHHHHHHHHHcCccE
Q 036052           65 GLSFDSEEAAREFAERHGWEY   85 (115)
Q Consensus        65 ~l~F~skE~Ai~yaek~G~~y   85 (115)
                      .|.|+|.++++.||+++||..
T Consensus       199 ~L~f~s~~e~~~f~~~~gw~i  219 (229)
T 4b0z_A          199 LLYLENTKETEKLAEERGWDI  219 (229)
T ss_dssp             HTTCSSHHHHHHHHHHHTCEE
T ss_pred             HhCCCCHHHHHHHHHHcCCEE
Confidence            589999999999999999976

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=82.67  E-value=0.65  Score=37.15  Aligned_cols=22  Identities=23%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             eeecCCHHHHHHHHHHcCccEE
Q 036052           65 GLSFDSEEAAREFAERHGWEYV   86 (115)
Q Consensus        65 ~l~F~skE~Ai~yaek~G~~y~   86 (115)
                      .|.|+|.|+|++||+.+||.+.
T Consensus       233 ~L~Fds~ee~~~F~~~~gl~~~  254 (316)
T 3t5v_A          233 MLLFNNRQEIIEFCNYYSIEII  254 (316)
T ss_dssp             HTTCSSHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCHHHHHHHHHHCCCeEe
Confidence            5899999999999999999996

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.63  E-value=0.5  Score=36.87  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             eeecCCHHHHHHHHHHcCccE
Q 036052           65 GLSFDSEEAAREFAERHGWEY   85 (115)
Q Consensus        65 ~l~F~skE~Ai~yaek~G~~y   85 (115)
                      .|.|+|.+++++||+++||..
T Consensus       208 ~L~F~s~~e~~~F~~~~gW~~  228 (274)
T 4b4t_T          208 LLFFNNEKETEKFALERNWPI  228 (274)
T ss_dssp             HHTCCSHHHHHHHHHHTTCCC
T ss_pred             HhCCCCHHHHHHHHHHcCCEE
Confidence            588999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	89.39

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=0.056  Score=34.72  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             eecCCHHHHHHHHHHcCccEEEe
Q 036052           66 LSFDSEEAAREFAERHGWEYVVR   88 (115)
Q Consensus        66 l~F~skE~Ai~yaek~G~~y~V~   88 (115)
                      |.|.||+|=++||++||++|...
T Consensus       163 ~~~~sk~ei~~ya~~~gi~~~~~  185 (188)
T d1k92a1         163 DELGGRHEMSEFMIACGFDYKMS  185 (188)
T ss_dssp             HHSSSHHHHHHHHHHTTCCCCCC
T ss_pred             cccCCHHHHHHHHHHcCCCCCCC
Confidence            45679999999999999999764