Citrus Sinensis ID: 036054

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MLLGALVSFRTCVIATLAFVFIIVFSKSASAINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCPYDTVVPTMVQGMDMAILLSQLGNSKFEL
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccEcccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccc
MLLGALVSFRTCVIATLAFVFIIVFSKsasaindsqvkcSRTCVAENcnsvgirygkycgvgwsgypgekpcdeldacckihdecvdkkgltnikcHEKFKRCIKKVQKfgnvgfswkcpydtvvptMVQGMDMAILLSQLGNSKFEL
MLLGALVSFRTCVIATLAFVFIIVFSKSASAINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDEcvdkkgltnikchekFKRCIKKVqkfgnvgfswkCPYDTVVPTMVQGMDMAILLSQLGNSKFEL
MLLGALVSFRTCVIATLAFVFIIVFSKSASAINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCPYDTVVPTMVQGMDMAILLSQLGNSKFEL
**LGALVSFRTCVIATLAFVFIIVFSKSASAINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCPYDTVVPTMVQGMDMAILLSQ********
****ALVSFRTCVIATLAFVFIIVFSK***************CVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCPYDTVVPTMVQGMDMAILLSQLG******
MLLGALVSFRTCVIATLAFVFIIVFSKSASAINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCPYDTVVPTMVQGMDMAILLSQLGNSKFEL
MLLGALVSFRTCVIATLAFVFIIVFSKSASAIN***VKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCPYDTVVPTMVQGMDMAILLSQLGN*****
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLLGALVSFRTCVIATLAFVFIIVFSKSASAINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCPYDTVVPTMVQGMDMAILLSQLGNSKFEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query148 2.2.26 [Sep-21-2011]
Q9XG80138 Probable phospholipase A2 yes no 0.716 0.768 0.698 5e-41
Q8GZB4147 Phospholipase A2-beta OS= yes no 0.75 0.755 0.601 6e-38
Q9M0D7187 Phospholipase A2-gamma OS no no 0.763 0.604 0.563 2e-36
Q8GV50191 Phospholipase A2-delta OS no no 0.763 0.591 0.537 1e-33
Q10E50163 Phospholipase A2 homolog no no 0.695 0.631 0.390 4e-16
Q8S8N6148 Phospholipase A2-alpha OS no no 0.817 0.817 0.362 6e-15
Q9XG81153 Probable phospholipase A2 no no 0.472 0.457 0.506 3e-14
P00616152 Acidic phospholipase A2 h N/A no 0.439 0.427 0.337 7e-05
Q8AXW7146 Basic phospholipase A2 OS N/A no 0.297 0.301 0.428 0.0002
P00608119 Basic phospholipase A2 no N/A no 0.229 0.285 0.578 0.0003
>sp|Q9XG80|PLA21_ORYSJ Probable phospholipase A2 homolog 1 OS=Oryza sativa subsp. japonica GN=PLA2-I PE=2 SV=1 Back     alignment and function desciption
 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 87/106 (82%)

Query: 43  CVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKR 102
           C A NC+SVGIRYGKYCGVGWSG  GE+PCD+LDACC+ HD CVDKKGL ++KCHEKFK 
Sbjct: 33  CAALNCDSVGIRYGKYCGVGWSGCDGEEPCDDLDACCRDHDHCVDKKGLMSVKCHEKFKN 92

Query: 103 CIKKVQKFGNVGFSWKCPYDTVVPTMVQGMDMAILLSQLGNSKFEL 148
           C++KV+K G +GFS KCPY+  + TM  GMDMAI+LSQLG  K EL
Sbjct: 93  CMRKVKKAGKIGFSRKCPYEMAMATMTSGMDMAIMLSQLGTQKLEL 138
PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides (By similarity). Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 4
>sp|Q8GZB4|PLA2B_ARATH Phospholipase A2-beta OS=Arabidopsis thaliana GN=PLA2-BETA PE=1 SV=1 Back     alignment and function description
>sp|Q9M0D7|PLA2C_ARATH Phospholipase A2-gamma OS=Arabidopsis thaliana GN=PLA2-GAMMA PE=1 SV=1 Back     alignment and function description
>sp|Q8GV50|PLA2D_ARATH Phospholipase A2-delta OS=Arabidopsis thaliana GN=PLA2-DELTA PE=2 SV=1 Back     alignment and function description
>sp|Q10E50|PLA23_ORYSJ Phospholipase A2 homolog 3 OS=Oryza sativa subsp. japonica GN=PLA2-III PE=1 SV=1 Back     alignment and function description
>sp|Q8S8N6|PLA2A_ARATH Phospholipase A2-alpha OS=Arabidopsis thaliana GN=PLA2-ALPHA PE=1 SV=1 Back     alignment and function description
>sp|Q9XG81|PLA22_ORYSJ Probable phospholipase A2 homolog 2 OS=Oryza sativa subsp. japonica GN=PLA2-II PE=1 SV=1 Back     alignment and function description
>sp|P00616|PA2TG_OXYSC Acidic phospholipase A2 homolog taipoxin gamma chain OS=Oxyuranus scutellatus scutellatus PE=1 SV=2 Back     alignment and function description
>sp|Q8AXW7|PA2B_MICCO Basic phospholipase A2 OS=Micrurus corallinus PE=2 SV=1 Back     alignment and function description
>sp|P00608|PA2B_NOTSC Basic phospholipase A2 notexin OS=Notechis scutatus scutatus PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
295646609 279 phospholipase A2 beta [Citrus sinensis] 1.0 0.530 0.905 4e-73
224088011149 predicted protein [Populus trichocarpa] 0.993 0.986 0.706 3e-53
60592660147 phospholipase A2 [Nicotiana tabacum] 0.912 0.918 0.720 4e-53
225444991151 PREDICTED: probable phospholipase A2 hom 0.783 0.768 0.810 1e-51
255546209150 Phospholipase A23 [Ricinus communis] gi| 1.0 0.986 0.74 9e-51
449446576140 PREDICTED: probable phospholipase A2 hom 0.783 0.828 0.758 4e-48
294463869161 unknown [Picea sitchensis] 0.959 0.881 0.569 3e-44
357138302136 PREDICTED: probable phospholipase A2 hom 0.804 0.875 0.672 4e-42
242067118137 hypothetical protein SORBIDRAFT_04g03843 0.743 0.802 0.709 3e-41
326517342139 predicted protein [Hordeum vulgare subsp 0.743 0.791 0.709 4e-41
>gi|295646609|gb|ADF55750.1| phospholipase A2 beta [Citrus sinensis] Back     alignment and taxonomy information
 Score =  278 bits (712), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 134/148 (90%), Positives = 138/148 (93%)

Query: 1   MLLGALVSFRTCVIATLAFVFIIVFSKSASAINDSQVKCSRTCVAENCNSVGIRYGKYCG 60
           MLLGA V FRTCVIA  AFVFIIVFS+SASA+NDSQVKCSRTCVAENCNSVGIRYGKYCG
Sbjct: 132 MLLGAFVPFRTCVIAAFAFVFIIVFSESASALNDSQVKCSRTCVAENCNSVGIRYGKYCG 191

Query: 61  VGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCP 120
           VGWSG PGEKPCD+LDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQK   VGFS +CP
Sbjct: 192 VGWSGCPGEKPCDDLDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKSAKVGFSRECP 251

Query: 121 YDTVVPTMVQGMDMAILLSQLGNSKFEL 148
           YDTVVPTMVQGMDMAILLSQLG SKFEL
Sbjct: 252 YDTVVPTMVQGMDMAILLSQLGGSKFEL 279

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224088011|ref|XP_002308290.1| predicted protein [Populus trichocarpa] gi|222854266|gb|EEE91813.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|60592660|dbj|BAD90926.1| phospholipase A2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|225444991|ref|XP_002282822.1| PREDICTED: probable phospholipase A2 homolog 1 [Vitis vinifera] gi|297738701|emb|CBI27946.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546209|ref|XP_002514164.1| Phospholipase A23 [Ricinus communis] gi|223546620|gb|EEF48118.1| Phospholipase A23 [Ricinus communis] Back     alignment and taxonomy information
>gi|449446576|ref|XP_004141047.1| PREDICTED: probable phospholipase A2 homolog 1-like [Cucumis sativus] gi|449488015|ref|XP_004157914.1| PREDICTED: probable phospholipase A2 homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|294463869|gb|ADE77457.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|357138302|ref|XP_003570734.1| PREDICTED: probable phospholipase A2 homolog 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242067118|ref|XP_002454848.1| hypothetical protein SORBIDRAFT_04g038430 [Sorghum bicolor] gi|241934679|gb|EES07824.1| hypothetical protein SORBIDRAFT_04g038430 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|326517342|dbj|BAK00038.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
TAIR|locus:2118354187 PLA2-GAMMA "AT4G29460" [Arabid 0.763 0.604 0.571 3.9e-37
TAIR|locus:2118359191 PLA2-DELTA "phospholipase A2 d 0.763 0.591 0.537 8.3e-35
UNIPROTKB|Q10E50163 PLA2-III "Phospholipase A2 hom 0.689 0.625 0.405 5.1e-19
TAIR|locus:505006241148 PLA2-ALPHA "AT2G06925" [Arabid 0.844 0.844 0.359 1.6e-17
UNIPROTKB|Q9XG81153 PLA2-II "Probable phospholipas 0.466 0.450 0.513 5.3e-17
UNIPROTKB|F8W062119 PLA2G1B "Phospholipase A2" [Ho 0.25 0.310 0.523 4.3e-06
UNIPROTKB|P04054148 PLA2G1B "Phospholipase A2" [Ho 0.25 0.25 0.523 4.3e-06
UNIPROTKB|I3LV50146 PLA2G1B "Phospholipase A2, maj 0.25 0.253 0.523 4.3e-06
UNIPROTKB|P00592146 PLA2G1B "Phospholipase A2, maj 0.25 0.253 0.523 4.3e-06
UNIPROTKB|P04416124 P04416 "Phospholipase A2, mino 0.25 0.298 0.523 4.3e-06
TAIR|locus:2118354 PLA2-GAMMA "AT4G29460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 68/119 (57%), Positives = 86/119 (72%)

Query:    31 AINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKG 90
             A+  SQ KCS TC+A+NCNS+GIRYGKYCG+G+ G PGE PCD+LDACC  HD CVD KG
Sbjct:    21 AVVSSQEKCSNTCIAQNCNSLGIRYGKYCGIGYFGCPGEPPCDDLDACCMTHDNCVDLKG 80

Query:    91 LTNIKCHEKFKRCIKKVQK---FGN---VGFSWKCPYDTVVPTMVQGMDMAILLSQLGN 143
             +T + CH++FKRC+ K+ K     N   +GFS +CPY  V+PT+  GMD  I  S +GN
Sbjct:    81 MTYVNCHKQFKRCVNKLSKSIKHSNGEKIGFSTQCPYSIVIPTVFNGMDYGIFFSGIGN 139
GO:0004623 "phospholipase A2 activity" evidence=ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009555 "pollen development" evidence=IMP
GO:0009846 "pollen germination" evidence=IDA
GO:0009860 "pollen tube growth" evidence=IDA
TAIR|locus:2118359 PLA2-DELTA "phospholipase A2 delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10E50 PLA2-III "Phospholipase A2 homolog 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:505006241 PLA2-ALPHA "AT2G06925" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XG81 PLA2-II "Probable phospholipase A2 homolog 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|F8W062 PLA2G1B "Phospholipase A2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P04054 PLA2G1B "Phospholipase A2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LV50 PLA2G1B "Phospholipase A2, major isoenzyme" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P00592 PLA2G1B "Phospholipase A2, major isoenzyme" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P04416 P04416 "Phospholipase A2, minor isoenzyme" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XG80PLA21_ORYSJ3, ., 1, ., 1, ., 40.69810.71620.7681yesno
Q8GZB4PLA2B_ARATH3, ., 1, ., 1, ., 40.60160.750.7551yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
cd04706117 cd04706, PLA2_plant, PLA2_plant: Plant-specific su 1e-39
cd0061883 cd00618, PLA2_like, PLA2_like: Phospholipase A2, a 2e-12
cd00125115 cd00125, PLA2c, PLA2c: Phospholipase A2, a family 3e-07
smart00085117 smart00085, PA2c, Phospholipase A2 4e-07
pfam00068116 pfam00068, Phospholip_A2_1, Phospholipase A2 8e-07
cd0470497 cd04704, PLA2_bee_venom_like, PLA2_bee_venom_like: 5e-04
pfam0582699 pfam05826, Phospholip_A2_2, Phospholipase A2 0.002
>gnl|CDD|153095 cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent Back     alignment and domain information 
 Score =  129 bits (326), Expect = 1e-39
 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 4/110 (3%)

Query: 38  KCSRTCVAENCNSV-GIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKK--GLTNI 94
           +CSRTC +  C+    +RYGKYCG G+SG PGE+PCD+LDACC  HD CV  K     ++
Sbjct: 6   ECSRTCESYFCSGPPFLRYGKYCGPGYSGCPGERPCDDLDACCMTHDACVQAKKNDYLSL 65

Query: 95  KCHEKFKRCIKKVQK-FGNVGFSWKCPYDTVVPTMVQGMDMAILLSQLGN 143
           +C+EKFK C+++ +K         KC    V+P +   MD A++ S+LG 
Sbjct: 66  ECNEKFKNCVRRFRKARKPTFEGNKCIVTFVIPVITVVMDAALIASKLGK 115

Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop. Length = 117
>gnl|CDD|153092 cd00618, PLA2_like, PLA2_like: Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent Back     alignment and domain information
>gnl|CDD|153091 cd00125, PLA2c, PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent Back     alignment and domain information
>gnl|CDD|214508 smart00085, PA2c, Phospholipase A2 Back     alignment and domain information
>gnl|CDD|200972 pfam00068, Phospholip_A2_1, Phospholipase A2 Back     alignment and domain information
>gnl|CDD|153093 cd04704, PLA2_bee_venom_like, PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2 Back     alignment and domain information
>gnl|CDD|147789 pfam05826, Phospholip_A2_2, Phospholipase A2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 148
cd04706117 PLA2_plant PLA2_plant: Plant-specific sub-family o 100.0
KOG4087144 consensus Phospholipase A2 [Lipid transport and me 99.94
cd00125115 PLA2c PLA2c: Phospholipase A2, a family of secreto 99.83
smart00085117 PA2c Phospholipase A2. 99.77
cd04707117 otoconin_90 otoconin_90: Phospholipase A2-like dom 99.76
PF00068116 Phospholip_A2_1: Phospholipase A2; InterPro: IPR00 99.61
cd0061883 PLA2_like PLA2_like: Phospholipase A2, a super-fam 99.6
cd0470497 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-fam 98.99
PF0582699 Phospholip_A2_2: Phospholipase A2; InterPro: IPR00 98.55
cd04705100 PLA2_group_III_like PLA2_group_III_like: A sub-fam 97.56
PF0839864 Parvo_coat_N: Parvovirus coat protein VP1; InterPr 97.33
PF06951184 PLA2G12: Group XII secretory phospholipase A2 prec 95.96
PF1069098 Myticin-prepro: Myticin pre-proprotein from the mu 83.7
>cd04706 PLA2_plant PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent Back     alignment and domain information 
Probab=100.00  E-value=1.8e-33  Score=212.59  Aligned_cols=109  Identities=44%  Similarity=0.909  Sum_probs=101.4

Q ss_pred             hhhhhhhcccccCCcc-ccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhh--cCCCCCcchHHHHHHHHHHhhc-C
Q 036054           36 QVKCSRTCVAENCNSV-GIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDK--KGLTNIKCHEKFKRCIKKVQKF-G  111 (148)
Q Consensus        36 ~i~~~rtC~~~~~~~~-y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~--~~~~~~~C~~~~~~c~~~~~~~-~  111 (148)
                      ..+++|||+..++... |..||||||+|++|.+|++|+|+||+||+.||+||++  .++.+++|+.+|.+|+.+++++ .
T Consensus         4 ~~~csrtc~~~~c~~~~y~~YG~yCG~g~~g~~~~~P~D~lD~CC~~HD~Cy~~~~~~~~~c~C~~~f~~Cl~~~~~~~~   83 (117)
T cd04706           4 PEECSRTCESYFCSGPPFLRYGKYCGPGYSGCPGERPCDDLDACCMTHDACVQAKKNDYLSLECNEKFKNCVRRFRKARK   83 (117)
T ss_pred             cccccccchhhhccCCcccccCcccCCCCCCCCCCCCcchhhHHHHhCcCcccCCCCCcCCchHHHHHHHHHHHhccccc
Confidence            3589999999999876 9999999999999988989999999999999999998  6689999999999999999988 6


Q ss_pred             ccccCCCCCccchhhhHHhhHHHHHHHHhhCCC
Q 036054          112 NVGFSWKCPYDTVVPTMVQGMDMAILLSQLGNS  144 (148)
Q Consensus       112 ~~~F~~~C~~~~~~~~~~~~md~a~~~~~~~~~  144 (148)
                      +++|+++|+++.++++|..+||+|++||+|+..
T Consensus        84 ~~~~~~~C~~~~v~~~i~~~~~~a~~~~~~~~~  116 (117)
T cd04706          84 PTFEGNKCIVTFVIPVITVVMDAALIASKLGKR  116 (117)
T ss_pred             ceeccccCccceeeeeeecchHHHHHHHHhccC
Confidence            777789999999999999999999999998764

Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.
>KOG4087 consensus Phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>cd00125 PLA2c PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent Back     alignment and domain information
>smart00085 PA2c Phospholipase A2 Back     alignment and domain information
>cd04707 otoconin_90 otoconin_90: Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia Back     alignment and domain information
>PF00068 Phospholip_A2_1: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3 Back     alignment and domain information
>cd00618 PLA2_like PLA2_like: Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent Back     alignment and domain information
>cd04704 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2 Back     alignment and domain information
>PF05826 Phospholip_A2_2: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3 Back     alignment and domain information
>cd04705 PLA2_group_III_like PLA2_group_III_like: A sub-family of Phospholipase A2, similar to human group III PLA2 Back     alignment and domain information
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides Back     alignment and domain information
>PF06951 PLA2G12: Group XII secretory phospholipase A2 precursor (PLA2G12); InterPro: IPR010711 This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (3 Back     alignment and domain information
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
2wg8_A129 Structure Of Oryza Sativa (Rice) Pla2, Orthorhombic 3e-15
2wg8_B129 Structure Of Oryza Sativa (Rice) Pla2, Orthorhombic 4e-15
2wg7_A130 Structure Of Oryza Sativa (Rice) Pla2 Length = 130 4e-15
1ae7_A119 Notexin, A Presynaptic Neurotoxic Phospholipase A2 3e-05
1p7o_A124 Crystal Structure Of Phospholipase A2 (Mipla4) From 3e-04
3elo_A133 Crystal Structure Of Human Pancreatic Prophospholip 3e-04
1pwo_A124 Crystal Structure Of Phospholipase A2 (Mipla2) From 4e-04
2not_A119 Notechis Ii-5, Neurotoxic Phospholipase A2 From Not 4e-04
3v9m_A118 Phospholipase Acii4 From Australian King Brown Snak 5e-04
1ozy_A121 Crystal Structure Of Phospholipase A2 (mipla3) From 6e-04
1hn4_A131 Prophospholipase A2 Dimer Complexed With Mj33, Sulf 6e-04
1fx9_A124 Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + 6e-04
2phi_A124 A Large Conformational Change Is Found In The Cryst 7e-04
>pdb|2WG8|A Chain A, Structure Of Oryza Sativa (Rice) Pla2, Orthorhombic Crystal Form Length = 129 Back     alignment and structure 
Iteration: 1

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 39  CSRTCVAENCNSVGI-RYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKG--LTNIK 95
           CSRTC ++ C    + RYGKYCG+ +SG PGE+PCD LDACC +HD CVD       N  
Sbjct: 18  CSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHNDDYLNTM 77
Query: 96  CHEKFKRCIKKV 107
           C+E    CI +V
Sbjct: 78  CNENLLSCIDRV 89
>pdb|2WG8|B Chain B, Structure Of Oryza Sativa (Rice) Pla2, Orthorhombic Crystal Form Length = 129 Back     alignment and structure
>pdb|2WG7|A Chain A, Structure Of Oryza Sativa (Rice) Pla2 Length = 130 Back     alignment and structure
>pdb|1AE7|A Chain A, Notexin, A Presynaptic Neurotoxic Phospholipase A2 Length = 119 Back     alignment and structure
>pdb|1P7O|A Chain A, Crystal Structure Of Phospholipase A2 (Mipla4) From Micropechis Ikaheka Length = 124 Back     alignment and structure
>pdb|3ELO|A Chain A, Crystal Structure Of Human Pancreatic Prophospholipase A2 Length = 133 Back     alignment and structure
>pdb|1PWO|A Chain A, Crystal Structure Of Phospholipase A2 (Mipla2) From Micropechis Ikaheka Length = 124 Back     alignment and structure
>pdb|2NOT|A Chain A, Notechis Ii-5, Neurotoxic Phospholipase A2 From Notechis Scutatus Scutatus Length = 119 Back     alignment and structure
>pdb|3V9M|A Chain A, Phospholipase Acii4 From Australian King Brown Snake Length = 118 Back     alignment and structure
>pdb|1OZY|A Chain A, Crystal Structure Of Phospholipase A2 (mipla3) From Micropechis Ikaheka Length = 121 Back     alignment and structure
>pdb|1HN4|A Chain A, Prophospholipase A2 Dimer Complexed With Mj33, Sulfate, And Calcium Length = 131 Back     alignment and structure
>pdb|1FX9|A Chain A, Carboxylic Ester Hydrolase Complex (Dimeric Pla2 + Mj33 Inhibitor + Sulphate Ions) Length = 124 Back     alignment and structure
>pdb|2PHI|A Chain A, A Large Conformational Change Is Found In The Crystal Structure Of The Porcine Pancreatic Phospholipase A2 Point Mutant F63v Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
2wg7_A130 PLA2, putative phospholipase A2; hydrolase, secret 1e-29
4e4c_A119 Phospholipase A2; hydrolase; HET: MES; 1.80A {Note 2e-04
>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A {Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A Length = 130 Back     alignment and structure
 Score =  103 bits (258), Expect = 1e-29
 Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 35  SQVKCSRTCVAENCNSVGI-RYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLT- 92
               CSRTC ++ C    + RYGKYCG+ +SG PGE+PCD LDACC +HD CVD      
Sbjct: 15  KDQGCSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHNDDY 74

Query: 93  -NIKCHEKFKRCIKKVQKFG------NVGFSWKCPYDTVVPTMVQG 131
            N  C+E    CI +V          NVG +       +   +  G
Sbjct: 75  LNTMCNENLLSCIDRVSGATFPGNKCNVGQTASVIRGVIETAVFAG 120
>4e4c_A Phospholipase A2; hydrolase; HET: MES; 1.80A {Notechis scutatus scutatus} PDB: 1ae7_A* 2not_A Length = 119 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query148
2wg7_A130 PLA2, putative phospholipase A2; hydrolase, secret 100.0
4h0s_A137 Svpla2 homolog, basic phospholipase A2 homolog CTS 99.89
1gp7_A151 Phospholipase A2; snake venom, KING cobra, cardiot 99.82
3jql_A119 Phospholipase A2 isoform 3; phospholipase A2, hexa 99.8
3vbz_A118 Phospholipase A2 homolog, taipoxin beta chain; pho 99.79
4e4c_A119 Phospholipase A2; hydrolase; HET: MES; 1.80A {Note 99.79
1g0z_A118 Phospholipase A2; toxin; 2.18A {Bungarus caeruleus 99.79
1le6_A123 Group X secretory phospholipase A2; human phosphat 99.78
3u8i_A124 Phospholipase A2, membrane associated; secreted ph 99.78
3r0l_D122 Phospholipase A2 CB; crotoxin, presynaptic neuroto 99.78
1bk9_A124 Phospholipase A2; hydrolase, platelet aggregation 99.78
1jlt_A122 Phospholipase A2 inhibitor; heterodimer complex, h 99.77
1gmz_A122 Phospholipase A2; hydrolase, neurotoxic; 2.4A {Bot 99.77
2aoz_A121 Myotoxin II, phospholipase A2 homolog; X-RAY diffr 99.77
3dih_A122 Phospholipase A2 homolog, ammodytin L; phospholipa 99.77
2qhd_A122 Phospholipase A2; beta sheet, three helices, prote 99.77
2g58_A121 Phospholipase A2 VRV-PL-VIIIA; phospholipase A2, d 99.77
1m8t_A119 Phospholipase A2; twinned crystal, alpha, beta, hy 99.77
2h4c_B122 Phospholipase A2-II; non-inhibitor acidic PLA2, ba 99.77
1jlt_B122 Phospholipase A2, vipoxin; heterodimer complex, hy 99.76
4h0q_A121 Phospholipase A2, acid 5; alpha-helix, glycerophos 99.76
1bun_A120 BETA2-bungarotoxin; hydrolase, presynaptic neuroto 99.76
1zlb_A122 Hypotensive phospholipase A2; Asp49-PLA2, toxin, s 99.76
1p7o_A124 Phospholipase A2, mipla4; pancreatic loop, HYDR; 2 99.76
1vip_A121 Phospholipase A2; hydrolase, anticoagulant; 2.20A 99.76
1mc2_A122 Acutohaemonlysin, phospholipase A2; YS49-phospholi 99.76
1oz6_A120 Phospholipase A2; enzyme, PLA2, hydrolase; 2.60A { 99.75
4hg9_A122 Basic phospholipase A2 B; alpha-helix, glycerophos 99.75
1g4i_A123 Phospholipase A2; lipid degradation, hydrolase; 0. 99.74
1poc_A134 Phospholipase A2; hydrolase; HET: GEL; 2.00A {Apis 98.8
3ntt_A 724 Capsid protein; gene therapy vector, cystic fibros 89.65
3ng9_A 736 Capsid protein; beta barrel, single-stranded DNA V 81.22
>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A {Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A Back     alignment and structure
Probab=100.00  E-value=1.1e-36  Score=232.29  Aligned_cols=117  Identities=36%  Similarity=0.785  Sum_probs=104.4

Q ss_pred             hcccchhhhhhhhhhhhcccccCC-ccccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhhcC--CCCCcchHHHHH
Q 036054           26 SKSASAINDSQVKCSRTCVAENCN-SVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKG--LTNIKCHEKFKR  102 (148)
Q Consensus        26 ~~~~g~~~~~~i~~~rtC~~~~~~-~~y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~--~~~~~C~~~~~~  102 (148)
                      -++.++..+.+++++|+|++.+|. +.|..||||||+|++|.||++|+|+|||||+.||+||++.+  +.+.+||..+.+
T Consensus         6 ~~~~~~~~~~~~~Csr~C~~~~c~~~~y~~YGcyCG~Gg~G~pg~~PvD~lDrCC~~HD~CY~~~~~~Y~n~eCDk~~a~   85 (130)
T 2wg7_A            6 GDLLGSTPAKDQGCSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHNDDYLNTMCNENLLS   85 (130)
T ss_dssp             GGSCC---CTTSSCBCSCEEESTTCTTTCEEETTBSTTCCBCTTCCCSSHHHHHHHHHHHHHHTTTTCTTCHHHHHHHHH
T ss_pred             hhccCcccccCCcccChhcCCCCCchhhCccCccCCCCCCCCCCCCCCcHHHHHHhhccHHHhCcCCccCcHHHHHHHHH
Confidence            356666777888999999999999 78999999999999999999999999999999999999986  567889999999


Q ss_pred             HHHHHhhcCccccC-CCCCccchhhhHHhhHHHHHHHHh-hCCCc
Q 036054          103 CIKKVQKFGNVGFS-WKCPYDTVVPTMVQGMDMAILLSQ-LGNSK  145 (148)
Q Consensus       103 c~~~~~~~~~~~F~-~~C~~~~~~~~~~~~md~a~~~~~-~~~~~  145 (148)
                      |+.+..   ++.|. ++||+++++|||+++||+|||+++ ||+++
T Consensus        86 Cl~~~~---~ptf~g~~C~~~~v~~~i~~~~~~Ai~a~~~~h~~~  127 (130)
T 2wg7_A           86 CIDRVS---GATFPGNKCNVGQTASVIRGVIETAVFAGKILHKRD  127 (130)
T ss_dssp             HHTTCC---SCCCTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcc---CCCcCCCCCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence            999875   68895 999999999999999999999999 88764
>4h0s_A Svpla2 homolog, basic phospholipase A2 homolog CTS-R6; alpha-helix, glycerophospholipid, venom gland, hydrolase; 1.55A {Viridovipera stejnegeri} Back     alignment and structure
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity, myotoxic activity, pancreatic loop, hydrolase, lipid degradation, calcium; 2.6A {Ophiophagus hannah} SCOP: a.133.1.2 Back     alignment and structure
>3jql_A Phospholipase A2 isoform 3; phospholipase A2, hexapeptide, hydrolase, calcium, disulfide bond, lipid degradation, metal-binding, secreted; 1.20A {Naja sagittifera} SCOP: a.133.1.2 PDB: 1mf4_A 3jq5_A 1ln8_A 3jti_A 3nju_A* 3osh_A* 3q4y_A 1t37_A 1zm6_A 3gci_A 1yxl_A 1oxr_A 1td7_A* 1sz8_A 1a3d_A 1a3f_A 1psh_A 2osh_A 1poa_A 1pob_A* ... Back     alignment and structure
>3vbz_A Phospholipase A2 homolog, taipoxin beta chain; phospholipase A2 fold, PLA2 fold, neurotoxin, binding; 1.76A {Oxyuranus scutellatus scutellatus} PDB: 3vc0_A Back     alignment and structure
>4e4c_A Phospholipase A2; hydrolase; HET: MES; 1.80A {Notechis scutatus scutatus} PDB: 1ae7_A* 2not_A Back     alignment and structure
>1g0z_A Phospholipase A2; toxin; 2.18A {Bungarus caeruleus} SCOP: a.133.1.2 PDB: 1u4j_A* 1g2x_A 2osn_A 1dpy_A 1fe5_A 1tc8_A* 1po8_A* Back     alignment and structure
>1le6_A Group X secretory phospholipase A2; human phosphatidylcholine 2-acylhydrolase GX, GX SPLA2, SPLA2-X; 1.97A {Homo sapiens} SCOP: a.133.1.2 PDB: 1le7_A Back     alignment and structure
>3u8i_A Phospholipase A2, membrane associated; secreted phospholipase A2, hydrolase; HET: OLD; 1.10A {Homo sapiens} PDB: 3u8d_A* 1ayp_A 1db4_A* 1db5_A* 1dcy_A* 1j1a_A* 1bbc_A* 1kqu_A* 1pod_A 1poe_A* 3u8b_A 1kvo_A* 3u8h_A* 1n28_B 1n29_A Back     alignment and structure
>3r0l_D Phospholipase A2 CB; crotoxin, presynaptic neurotoxin, snake venom, phospholipase heterodimer interface, hydrolase; 1.35A {Crotalus durissus terrificus} SCOP: a.133.1.2 PDB: 2qog_B 2qog_A 1bjj_A 1a2a_A Back     alignment and structure
>1bk9_A Phospholipase A2; hydrolase, platelet aggregation inhibitor, PBPB; HET: PBP; 2.00A {Gloydius halys} SCOP: a.133.1.2 PDB: 1psj_A 1ijl_A 1pp2_R Back     alignment and structure
>1jlt_A Phospholipase A2 inhibitor; heterodimer complex, hydrolase, PLA2-activity; 1.40A {Vipera ammodytes ammodytes} SCOP: a.133.1.2 PDB: 1vpi_A 1aok_A 1q5t_A 1oqs_A 2h4c_A Back     alignment and structure
>1gmz_A Phospholipase A2; hydrolase, neurotoxic; 2.4A {Bothrops pirajai} SCOP: a.133.1.2 Back     alignment and structure
>2aoz_A Myotoxin II, phospholipase A2 homolog; X-RAY diffration, myotoxicity, atropoides toxin; 2.08A {Atropoides nummifer} Back     alignment and structure
>3dih_A Phospholipase A2 homolog, ammodytin L; phospholipase A2 fold, myotoxin, secreted, toxin; 2.60A {Vipera ammodytes ammodytes} SCOP: a.133.1.2 PDB: 3ux7_A Back     alignment and structure
>2qhd_A Phospholipase A2; beta sheet, three helices, protein-ligand complex, hydrolase; HET: DAO; 1.95A {Echis carinatus} PDB: 2qhe_A 3bjw_A* Back     alignment and structure
>2g58_A Phospholipase A2 VRV-PL-VIIIA; phospholipase A2, diars, hydrolase-hydrolase inhibitor compl; HET: PHQ; 0.98A {Daboia russellii pulchella} SCOP: a.133.1.2 PDB: 1cl5_A 1fb2_A* 1jq8_A 1jq9_A 1kpm_A* 1oxl_A* 1fv0_A* 1q7a_A 1skg_A* 1sv3_A* 1sv9_A* 1sxk_A* 1tdv_A 1tg1_A* 1tg4_A 1th6_A* 1sqz_A 1tjq_A* 1tk4_A 1tp2_A* ... Back     alignment and structure
>1m8t_A Phospholipase A2; twinned crystal, alpha, beta, hydrolase; 2.10A {Ophiophagus hannah} SCOP: a.133.1.2 Back     alignment and structure
>2h4c_B Phospholipase A2-II; non-inhibitor acidic PLA2, basic PLA2, heterodimer, hydrolase; 2.60A {Daboia russellii siamensis} Back     alignment and structure
>1jlt_B Phospholipase A2, vipoxin; heterodimer complex, hydrolase, PLA2-activity; 1.40A {Vipera ammodytes ammodytes} SCOP: a.133.1.2 PDB: 1rgb_A* 2i0u_E* 1aok_B 1oqs_B Back     alignment and structure
>4h0q_A Phospholipase A2, acid 5; alpha-helix, glycerophospholipid, venom gland, hydrolase; 1.60A {Viridovipera stejnegeri} PDB: 1m8r_A 1m8s_A Back     alignment and structure
>1bun_A BETA2-bungarotoxin; hydrolase, presynaptic neurotoxin; 2.45A {Bungarus multicinctus} SCOP: a.133.1.2 Back     alignment and structure
>1zlb_A Hypotensive phospholipase A2; Asp49-PLA2, toxin, snake venom, hydrolase; 0.97A {Bothrops jararacussu} SCOP: a.133.1.2 PDB: 1umv_X 1zl7_A 1z76_A* 1u73_A* 1vap_A 3r0l_A Back     alignment and structure
>1p7o_A Phospholipase A2, mipla4; pancreatic loop, HYDR; 2.30A {Micropechis ikaheka} SCOP: a.133.1.2 PDB: 1pwo_A 1ozy_A Back     alignment and structure
>1vip_A Phospholipase A2; hydrolase, anticoagulant; 2.20A {Daboia russellii russellii} SCOP: a.133.1.2 Back     alignment and structure
>1mc2_A Acutohaemonlysin, phospholipase A2; YS49-phospholipase A2, snake venom, toxin; 0.85A {Deinagkistrodon acutus} SCOP: a.133.1.2 PDB: 1mg6_A 1pa0_A 3i03_A* 3hzd_A 3hzw_A* 3cxi_A* 3i3h_A 3i3i_A 1pc9_A 2q2j_A 3cyl_A* 1qll_A* 1xxs_A* 3qnl_A* 2ok9_A* 3iq3_A* 2h8i_A* 3mlm_A* 1y4l_A* 1clp_A* ... Back     alignment and structure
>1oz6_A Phospholipase A2; enzyme, PLA2, hydrolase; 2.60A {Echis carinatus} SCOP: a.133.1.2 Back     alignment and structure
>4hg9_A Basic phospholipase A2 B; alpha-helix, glycerophospholipid, venom gland, hydrolase; HET: CIT G3P; 1.60A {Gloydius halys} PDB: 1jia_A 1b4w_A 1c1j_A* Back     alignment and structure
>1g4i_A Phospholipase A2; lipid degradation, hydrolase; 0.97A {Bos taurus} SCOP: a.133.1.2 PDB: 1bvm_A 1fdk_A* 1bp2_A 1mkt_A 1mkv_A* 1une_A 2bpp_A 4bp2_A 2bp2_A 1kvy_A 1bpq_A 2zp3_A 1ceh_A 3bp2_A 2zp5_A 1kvx_A 1kvw_A 2zp4_A 1irb_A 2bax_A* ... Back     alignment and structure
>1poc_A Phospholipase A2; hydrolase; HET: GEL; 2.00A {Apis mellifera} SCOP: a.133.1.1 Back     alignment and structure
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5} Back     alignment and structure
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 148
d1jiaa_122 a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agki 1e-04
d1n28a_124 a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapie 1e-04
d2g58a1121 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake 2e-04
d1g0za_118 a.133.1.2 (A:) Snake phospholipase A2 {Indian krai 2e-04
d1gmza_122 a.133.1.2 (A:) Snake phospholipase A2 {Snake (Both 2e-04
d1p7oa_124 a.133.1.2 (A:) Snake phospholipase A2 {Small-eye s 2e-04
d1bjja_122 a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agki 2e-04
d1ae7a_119 a.133.1.2 (A:) Snake phospholipase A2 {Mainland ti 3e-04
d1vipa_121 a.133.1.2 (A:) Snake phospholipase A2 {Russell's v 4e-04
d1m8ra_124 a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agki 4e-04
d1zlba1122 a.133.1.2 (A:1-122) Snake phospholipase A2 {Jarara 5e-04
d1jlta_122 a.133.1.2 (A:) Snake phospholipase A2 {Sand viper 6e-04
d1jltb_122 a.133.1.2 (B:) Snake phospholipase A2 {Sand viper 7e-04
d1m8ta_119 a.133.1.2 (A:) Snake phospholipase A2 {King cobra 7e-04
d1poca_134 a.133.1.1 (A:) Phospholipase A2 {European honeybee 9e-04
d1g4ia_123 a.133.1.2 (A:) Phospholipase A2 {Cow (Bos taurus), 0.001
d1le6a_123 a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapie 0.001
d1sz8a_119 a.133.1.2 (A:) Snake phospholipase A2 {Andaman cob 0.002
d1mc2a_122 a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pac 0.002
d1oz6a_120 a.133.1.2 (A:) Snake phospholipase A2 {Saw-scaled 0.003
d1ppaa_121 a.133.1.2 (A:) Snake phospholipase A2 {Eastern cot 0.004
>d1jiaa_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon halys) [TaxId: 8714]} Length = 122 Back     information, alignment and structure

class: All alpha proteins
fold: Phospholipase A2, PLA2
superfamily: Phospholipase A2, PLA2
family: Vertebrate phospholipase A2
domain: Snake phospholipase A2
species: Snake (Agkistrodon halys) [TaxId: 8714]

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 55 YGKYCGVGWSGYPGEKPCDELDACCKIHDECVDK 88
          YG YCG G  G P     D  D CC +HD C +K
Sbjct: 24 YGCYCGSGGRGKPK----DATDRCCFVHDCCYEK 53
>d1n28a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens), synovial fluid [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d2g58a1 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake (Daboia russellii pulchella), different isoforms [TaxId: 97228]} Length = 121 Back     information, alignment and structure
>d1g0za_ a.133.1.2 (A:) Snake phospholipase A2 {Indian krait (Bungarus caeruleus), different isoforms [TaxId: 132961]} Length = 118 Back     information, alignment and structure
>d1gmza_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Bothrops pirajai), piratoxin III [TaxId: 113192]} Length = 122 Back     information, alignment and structure
>d1p7oa_ a.133.1.2 (A:) Snake phospholipase A2 {Small-eye snake (Micropechis ikaheka), different isoforms [TaxId: 66188]} Length = 124 Back     information, alignment and structure
>d1bjja_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon halys) [TaxId: 8714]} Length = 122 Back     information, alignment and structure
>d1ae7a_ a.133.1.2 (A:) Snake phospholipase A2 {Mainland tiger snake (Notechis scutatus scutatus), notexin [TaxId: 8663]} Length = 119 Back     information, alignment and structure
>d1vipa_ a.133.1.2 (A:) Snake phospholipase A2 {Russell's viper (Vipera russelli) [TaxId: 8707]} Length = 121 Back     information, alignment and structure
>d1m8ra_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon halys) [TaxId: 8714]} Length = 124 Back     information, alignment and structure
>d1zlba1 a.133.1.2 (A:1-122) Snake phospholipase A2 {Jararacussu (Bothrops jararacussu) [TaxId: 8726]} Length = 122 Back     information, alignment and structure
>d1jlta_ a.133.1.2 (A:) Snake phospholipase A2 {Sand viper (Vipera ammodytes meridionalis), vipoxin inhibitor [TaxId: 8704]} Length = 122 Back     information, alignment and structure
>d1jltb_ a.133.1.2 (B:) Snake phospholipase A2 {Sand viper (Vipera ammodytes meridionalis), vipoxin catalytic subunit [TaxId: 8704]} Length = 122 Back     information, alignment and structure
>d1m8ta_ a.133.1.2 (A:) Snake phospholipase A2 {King cobra (Ophiophagus hannah), an acidic isoform [TaxId: 8665]} Length = 119 Back     information, alignment and structure
>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis mellifera) [TaxId: 7460]} Length = 134 Back     information, alignment and structure
>d1g4ia_ a.133.1.2 (A:) Phospholipase A2 {Cow (Bos taurus), pancreas [TaxId: 9913]} Length = 123 Back     information, alignment and structure
>d1le6a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens), SPLA2 [TaxId: 9606]} Length = 123 Back     information, alignment and structure
>d1sz8a_ a.133.1.2 (A:) Snake phospholipase A2 {Andaman cobra (Naja sagittifera), acidic isoform 1 [TaxId: 195058]} Length = 119 Back     information, alignment and structure
>d1mc2a_ a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 122 Back     information, alignment and structure
>d1oz6a_ a.133.1.2 (A:) Snake phospholipase A2 {Saw-scaled viper (Echis carinatus) [TaxId: 40353]} Length = 120 Back     information, alignment and structure
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query148
d1g0za_118 Snake phospholipase A2 {Indian krait (Bungarus cae 99.82
d1n28a_124 Phospholipase A2 {Human (Homo sapiens), synovial f 99.82
d1le6a_123 Phospholipase A2 {Human (Homo sapiens), SPLA2 [Tax 99.82
d1ae7a_119 Snake phospholipase A2 {Mainland tiger snake (Note 99.81
d1buna_120 Snake phospholipase A2 {Many-banded krait (Bungaru 99.81
d1m8ra_124 Snake phospholipase A2 {Snake (Agkistrodon halys) 99.81
d1sz8a_119 Snake phospholipase A2 {Andaman cobra (Naja sagitt 99.81
d2g58a1121 Snake phospholipase A2 {Snake (Daboia russellii pu 99.8
d1jltb_122 Snake phospholipase A2 {Sand viper (Vipera ammodyt 99.8
d1gmza_122 Snake phospholipase A2 {Snake (Bothrops pirajai), 99.8
d1oz6a_120 Snake phospholipase A2 {Saw-scaled viper (Echis ca 99.79
d1jlta_122 Snake phospholipase A2 {Sand viper (Vipera ammodyt 99.79
d1zlba1122 Snake phospholipase A2 {Jararacussu (Bothrops jara 99.79
d1m8ta_119 Snake phospholipase A2 {King cobra (Ophiophagus ha 99.79
d1jiaa_122 Snake phospholipase A2 {Snake (Agkistrodon halys) 99.79
d1vipa_121 Snake phospholipase A2 {Russell's viper (Vipera ru 99.78
d1mc2a_122 Snake phospholipase A2 {Hundred-pace snake (Agkist 99.78
d1bjja_122 Snake phospholipase A2 {Snake (Agkistrodon halys) 99.77
d1ppaa_121 Snake phospholipase A2 {Eastern cottonmouth snake 99.77
d1p7oa_124 Snake phospholipase A2 {Small-eye snake (Micropech 99.76
d1g4ia_123 Phospholipase A2 {Cow (Bos taurus), pancreas [TaxI 99.76
d1poca_134 Phospholipase A2 {European honeybee (Apis mellifer 98.49
d1lwba_122 Prokaryotic phospholipase A2 {Streptomyces violace 86.42
>d1g0za_ a.133.1.2 (A:) Snake phospholipase A2 {Indian krait (Bungarus caeruleus), different isoforms [TaxId: 132961]} Back     information, alignment and structure
class: All alpha proteins
fold: Phospholipase A2, PLA2
superfamily: Phospholipase A2, PLA2
family: Vertebrate phospholipase A2
domain: Snake phospholipase A2
species: Indian krait (Bungarus caeruleus), different isoforms [TaxId: 132961]

Probab=99.82  E-value=1.5e-22  Score=150.04  Aligned_cols=78  Identities=31%  Similarity=0.520  Sum_probs=60.7

Q ss_pred             hhhhhhhhhhhhcccccCCccccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhhcCCCCCcchHHHHHHHHHHhhc
Q 036054           31 AINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKF  110 (148)
Q Consensus        31 ~~~~~~i~~~rtC~~~~~~~~y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~~~~~~C~~~~~~c~~~~~~~  110 (148)
                      +++|+. +++ .|++++++++|++||||||+|++|.    |||+|||||+.||+||+++. ....|++.+..|.++..+.
T Consensus         1 ~l~qf~-~MI-~c~t~~~~~~Y~~YGCyCG~gG~G~----PvD~~DrCC~~HD~CY~~~~-~~~~c~~~~~~Y~y~c~~~   73 (118)
T d1g0za_           1 NLKQFK-NMI-QCAGTRTWTSYIGYGCYCGYGGSGT----PVDELDRCCYTHDHCYNKAA-NIPGCNPLIKTYSYTCTKP   73 (118)
T ss_dssp             CHHHHH-HHH-HHHSSSCGGGGSSBTTTSSSCCCSC----CCSHHHHHHHHHHHHHHHHT-TSTTCCTTTCCCCEEEETT
T ss_pred             CHHHHH-HHH-HHhCCCChHHHcccCcccCCCCCCC----CcccchhhHHhCcHHHHhhc-ccCCCCcccccceEEEECC
Confidence            467764 445 5779999999999999999999998    99999999999999999973 3345666666666555544


Q ss_pred             Ccccc
Q 036054          111 GNVGF  115 (148)
Q Consensus       111 ~~~~F  115 (148)
                      .++|.
T Consensus        74 ~i~C~   78 (118)
T d1g0za_          74 NITCN   78 (118)
T ss_dssp             EEEEC
T ss_pred             EeEEC
Confidence            44443
>d1n28a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens), synovial fluid [TaxId: 9606]} Back     information, alignment and structure
>d1le6a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens), SPLA2 [TaxId: 9606]} Back     information, alignment and structure
>d1ae7a_ a.133.1.2 (A:) Snake phospholipase A2 {Mainland tiger snake (Notechis scutatus scutatus), notexin [TaxId: 8663]} Back     information, alignment and structure
>d1buna_ a.133.1.2 (A:) Snake phospholipase A2 {Many-banded krait (Bungarus multicinctus), beta2-bungarotoxin [TaxId: 8616]} Back     information, alignment and structure
>d1m8ra_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon halys) [TaxId: 8714]} Back     information, alignment and structure
>d1sz8a_ a.133.1.2 (A:) Snake phospholipase A2 {Andaman cobra (Naja sagittifera), acidic isoform 1 [TaxId: 195058]} Back     information, alignment and structure
>d2g58a1 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake (Daboia russellii pulchella), different isoforms [TaxId: 97228]} Back     information, alignment and structure
>d1jltb_ a.133.1.2 (B:) Snake phospholipase A2 {Sand viper (Vipera ammodytes meridionalis), vipoxin catalytic subunit [TaxId: 8704]} Back     information, alignment and structure
>d1gmza_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Bothrops pirajai), piratoxin III [TaxId: 113192]} Back     information, alignment and structure
>d1oz6a_ a.133.1.2 (A:) Snake phospholipase A2 {Saw-scaled viper (Echis carinatus) [TaxId: 40353]} Back     information, alignment and structure
>d1jlta_ a.133.1.2 (A:) Snake phospholipase A2 {Sand viper (Vipera ammodytes meridionalis), vipoxin inhibitor [TaxId: 8704]} Back     information, alignment and structure
>d1zlba1 a.133.1.2 (A:1-122) Snake phospholipase A2 {Jararacussu (Bothrops jararacussu) [TaxId: 8726]} Back     information, alignment and structure
>d1m8ta_ a.133.1.2 (A:) Snake phospholipase A2 {King cobra (Ophiophagus hannah), an acidic isoform [TaxId: 8665]} Back     information, alignment and structure
>d1jiaa_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon halys) [TaxId: 8714]} Back     information, alignment and structure
>d1vipa_ a.133.1.2 (A:) Snake phospholipase A2 {Russell's viper (Vipera russelli) [TaxId: 8707]} Back     information, alignment and structure
>d1mc2a_ a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Back     information, alignment and structure
>d1bjja_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon halys) [TaxId: 8714]} Back     information, alignment and structure
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]} Back     information, alignment and structure
>d1p7oa_ a.133.1.2 (A:) Snake phospholipase A2 {Small-eye snake (Micropechis ikaheka), different isoforms [TaxId: 66188]} Back     information, alignment and structure
>d1g4ia_ a.133.1.2 (A:) Phospholipase A2 {Cow (Bos taurus), pancreas [TaxId: 9913]} Back     information, alignment and structure
>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis mellifera) [TaxId: 7460]} Back     information, alignment and structure
>d1lwba_ a.133.1.3 (A:) Prokaryotic phospholipase A2 {Streptomyces violaceoruber [TaxId: 1935]} Back     information, alignment and structure