Citrus Sinensis ID: 036119
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 839 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR4 | 1054 | Putative disease resistan | yes | no | 0.387 | 0.308 | 0.414 | 3e-62 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.779 | 0.659 | 0.307 | 2e-61 | |
| Q9LRR5 | 1424 | Putative disease resistan | no | no | 0.421 | 0.248 | 0.376 | 2e-61 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.768 | 0.652 | 0.301 | 1e-60 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.771 | 0.667 | 0.310 | 2e-59 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.774 | 0.663 | 0.310 | 1e-58 | |
| Q8RXS5 | 888 | Probable disease resistan | no | no | 0.415 | 0.393 | 0.259 | 6e-26 | |
| O81825 | 919 | Probable disease resistan | no | no | 0.716 | 0.653 | 0.263 | 6e-24 | |
| Q8L3R3 | 885 | Disease resistance protei | no | no | 0.638 | 0.605 | 0.253 | 4e-23 | |
| Q8W3K0 | 1138 | Probable disease resistan | no | no | 0.860 | 0.634 | 0.245 | 4e-23 |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/357 (41%), Positives = 215/357 (60%), Gaps = 32/357 (8%)
Query: 1 ELKKQLFGKK--FLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGAD 58
+LK++L G FLLVLDD+WNEN++ W L PF A GS+I+VTTR+ VA M A
Sbjct: 267 KLKERLTGTGLPFLLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAV 326
Query: 59 PVYQLKELSDDDCLD-FTR----------HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRG 107
V+ L+ LSD DC F + ++ + ++ E+IV KC GLPLA KTLGG+LR
Sbjct: 327 HVHNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRF 386
Query: 108 RDDPRDWEFVLKTDIWNL--RDSDILPALR---------LKQCFAYSSLFPKDYEFQDEE 156
+WE VL + IW+L S++LP LR LK+CFAY S+FPK + F+ ++
Sbjct: 387 EGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDK 446
Query: 157 IILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWA 216
++LLW AEGFL Q + + +E+LG E+ EL SRSL Q++ +R++MHD IN+LA++A
Sbjct: 447 VVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK---TRYIMHDFINELAQFA 503
Query: 217 AGEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHF 276
+GE + ED + + SE R+ SY+ Y +++ +V+ LRTFLP+ L++
Sbjct: 504 SGEFSSKFEDGC----KLQVSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNS 559
Query: 277 DEN-YLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEE 332
+ L V + LL L RLRV SL Y+ P+ N+ H R L+LSRT+ E+
Sbjct: 560 SRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEK 616
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 247/804 (30%), Positives = 367/804 (45%), Gaps = 150/804 (18%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
+L++ L GK++ LVLDDVWNE+ +W L GA+G+ I++TTR + MG +
Sbjct: 246 KLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQL 305
Query: 61 YQLKELSDDDC-LDFTR----HQS-----LKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD 110
YQL LS +DC L F + HQ+ L E+G++IV KCGG+PLAAKTLGGLLR + +
Sbjct: 306 YQLSNLSQEDCWLLFKQRAFCHQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKRE 365
Query: 111 PRDWEFVLKTDIWNL--RDSDILPALRL---------KQCFAYSSLFPKDYEFQDEEIIL 159
+WE V ++IWNL ++ +LPALRL +QCFAY ++FPKD + + E +I
Sbjct: 366 ESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIA 425
Query: 160 LWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASR--FVMHDLINDLARWAA 217
LW A FL + N ++ED+G E EL+ RS FQ+ + + F MHDLI+DLA
Sbjct: 426 LWMAHSFLLSKGN-MELEDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLATSMF 484
Query: 218 GEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFD 277
+ RQ + +I Y K + SI E + ++ P
Sbjct: 485 ------SASASSRSIRQINVKDDEDMMFIVTNY---KDMMSIGFSEVVSSYSPS------ 529
Query: 278 ENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCG 337
L LRV +L LP+ +G+L HLR L+LS K C
Sbjct: 530 -----------LFKRFVSLRVLNLSN-SEFEQLPSSVGDLVHLRYLDLSGNKI-----CS 572
Query: 338 AGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLP------- 390
PK CKLQ L+TLD+ +C L CLP
Sbjct: 573 --------LPK-------RLCKLQN--------LQTLDLYNCQSL----SCLPKQTSKLC 605
Query: 391 ALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQ--DIRSLNW---LQISRCP 445
+L L +D C + P + ++ YF E + Q ++R+LN + I+
Sbjct: 606 SLRNLVLDHCP-LTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLNLRGAISITHLE 664
Query: 446 QLISLVTVEEHDQQQP----------ELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMR 495
++ + + +E + + P R + E+ E L P +L +
Sbjct: 665 RVKNDMEAKEANLSAKANLHSLSMSWDRPNRYESEEVKVLEALKPHP-------NLKYLE 717
Query: 496 IHDCAS--LVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVS 553
I D L + ++ + S++I C+ LP LE L ++ + V
Sbjct: 718 IIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPF---GELPCLESLELQDGSVEVE 774
Query: 554 FPEVA-------LPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYC-------- 598
+ E + PS LR + IGG L+ L + P LE +++S C
Sbjct: 775 YVEDSGFLTRRRFPS-LRKLHIGGFCNLKGLQRMKGAEQFP-VLEEMKISDCPMFVFPTL 832
Query: 599 -----------SNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNT--SLEEISISVL 645
++ LS NL +L LKI + SL E + +L +S+S L
Sbjct: 833 SSVKKLEIWGEADAGGLSSISNL-STLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFL 891
Query: 646 ENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPS-TKLTELTIYDCENLKALPNCMH 704
ENLK LP L +L++L+ + I C LES PEEGL + LTEL + C LK LP +
Sbjct: 892 ENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQ 951
Query: 705 NLTSLLNLKISECPSVVSFPEDGF 728
+LT+L +LKI CP ++ E G
Sbjct: 952 HLTTLTSLKIRGCPQLIKRCEKGI 975
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 217/390 (55%), Gaps = 36/390 (9%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
+LKK L GK+FLLVLDD W+E+ S W F GSKIV+TTR+ +V+ A+ +
Sbjct: 264 QLKKTLSGKRFLLVLDDFWSESDSEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKI 323
Query: 61 YQLKELSDDDCLDFTR------------HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGR 108
YQ+K +++++C + +Q L+ +G++I +C GLPLAA+ + LR +
Sbjct: 324 YQMKLMTNEECWELISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSK 383
Query: 109 DDPRDWEFVLKTDIWNLRDSDILPALRL---------KQCFAYSSLFPKDYEFQDEEIIL 159
+P DW V K ++ + ILP L+L K+CFA S+FPK + F EE++L
Sbjct: 384 PNPDDWYAVSKN--FSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVL 441
Query: 160 LWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGE 219
LW A L Q + R++ED+G +++ +L ++S FQ+ + FVMHDL+NDLA+ +G+
Sbjct: 442 LWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGD 501
Query: 220 ICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMEL-SHFDE 278
CFR+ED +N + + RHFS+ + D +SIC E LRT LP + +
Sbjct: 502 FCFRLED----DNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLES 557
Query: 279 NYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGA 338
L VL LLN L LR+ SL Y+ I NLP + LK LR L+LS TK +E
Sbjct: 558 LQLTEKVLNPLLNALSGLRILSLSHYQ-ITNLPKSLKGLKLLRYLDLSSTKIKEL----- 611
Query: 339 GQEVDEVFPKLRTLSLDNCCKLQGTLPRRL 368
E L+TL L NC L +LP+ +
Sbjct: 612 -PEFVCTLCNLQTLLLSNCRDLT-SLPKSI 639
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 239/792 (30%), Positives = 362/792 (45%), Gaps = 147/792 (18%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
+L++ L GK++LLVLDDVWN++ +W++L GA G+ I+ TTR V MG
Sbjct: 248 KLQELLNGKRYLLVLDDVWNDDLEKWAKLRAVLTVGARGASILATTRLEKVGSIMGTLQP 307
Query: 61 YQLKELSDDDCL------DFTRHQ----SLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD 110
Y L LS D L F + + +L +G++IV KCGG+PLAAKTLGGLLR + +
Sbjct: 308 YHLSNLSPHDSLLLFMQRAFGQQKEANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKRE 367
Query: 111 PRDWEFVLKTDIWNL--RDSDILPALR---------LKQCFAYSSLFPKDYEFQDEEIIL 159
+WE V +IW+L +S ILPALR L+QCFAY ++FPKD + E +I
Sbjct: 368 ESEWEHVRDNEIWSLPQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLIT 427
Query: 160 LWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQ--QSSYDASRFVMHDLINDLARWAA 217
LW A GFL + N ++ED+G E EL+ RS FQ ++ + F +HDLI+DLA
Sbjct: 428 LWMAHGFLLSKGN-LELEDVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLA---- 482
Query: 218 GEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFD 277
SL S CG R ++ D +H + F
Sbjct: 483 --------------------TSLFSASASCGNI----REINVKDYKHTVSI------GFA 512
Query: 278 ENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCG 337
++S LL LRV +L Y + LP+ IG+L HLR L+LS C
Sbjct: 513 AVVSSYS--PSLLKKFVSLRVLNL-SYSKLEQLPSSIGDLLHLRYLDLS---------CN 560
Query: 338 AGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLP------- 390
R+L + CKLQ L+TLD+ +C ++ CLP
Sbjct: 561 ----------NFRSLP-ERLCKLQN--------LQTLDVHNC----YSLNCLPKQTSKLS 597
Query: 391 ALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450
+L L +DGC + S+P + + + F+ ++ + L L + + L
Sbjct: 598 SLRHLVVDGCP--LTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNLNLCGSISITHL 655
Query: 451 VTVEEHDQQQPELPCRLQFLELSCC---EGLTRL-PQALLTLSSLTEMRIHDCASLVSFP 506
V+ + L + LS +G R + + L +L +++F
Sbjct: 656 ERVKNDTDAEANLSAKANLQSLSMSWDNDGPNRYESKEVKVLEALKPHPNLKYLEIIAFG 715
Query: 507 QAALPS--------QLRSVVIEECDALESLP---------EAWMQNSNSSLECLAIRSCN 549
PS ++ SV I+ C LP +QN ++ +E + +
Sbjct: 716 GFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLELQNGSAEVEYVEEDDVH 775
Query: 550 SLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYC--------SNL 601
S S + PS L+ + I +L+ L + + P LE + + YC S++
Sbjct: 776 SRFS-TRRSFPS-LKKLRIWFFRSLKGLMKEEGEEKFP-MLEEMAILYCPLFVFPTLSSV 832
Query: 602 ALLSRNGNLP----------QSLKYLKIEDCSKLESLAERLDN--TSLEEISISVLENLK 649
L +GN +L L+I + SL E + T+LE +S +NLK
Sbjct: 833 KKLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLK 892
Query: 650 SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPS-TKLTELTIYDCENLKALPNCMHNLTS 708
LP L +L+ L+++ I C +LESFPE+GL T LT+L + C+ LK LP + +LT+
Sbjct: 893 DLPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTA 952
Query: 709 LLNLKISECPSV 720
L NL +S CP V
Sbjct: 953 LTNLGVSGCPEV 964
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 245/788 (31%), Positives = 360/788 (45%), Gaps = 141/788 (17%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
+L++ L GK++LLVLDDVWNE+ +W+ L GA+G+ ++ TTR V MG
Sbjct: 247 KLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQP 306
Query: 61 YQLKELSDDDC-LDFTR----HQ-----SLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD 110
Y+L LS +DC L F + HQ +L +G++IV K GG+PLAAKTLGG+L + +
Sbjct: 307 YELSNLSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKRE 366
Query: 111 PRDWEFVLKTDIWNL--RDSDILPALR---------LKQCFAYSSLFPKDYEFQDEEIIL 159
R WE V + IWNL +S ILPALR LKQCFAY ++FPKD + + E++I
Sbjct: 367 ERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLIS 426
Query: 160 LWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASR--FVMHDLINDLARWAA 217
LW A GFL + N ++ED+G E +EL+ RS FQ+ + F MHDLI+DLA
Sbjct: 427 LWMAHGFLLSKGN-MELEDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLA---- 481
Query: 218 GEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFD 277
+T + R+ S H I +V T P+E
Sbjct: 482 --TSLFSANTSSSNIREINKHSYTHMMSI-----------GFAEVVFFYTLPPLE----- 523
Query: 278 ENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCG 337
LRV +L G LP+ IG+L HLR LNL G
Sbjct: 524 --------------KFISLRVLNL-GDSTFNKLPSSIGDLVHLRYLNLY----------G 558
Query: 338 AGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLP------- 390
+G +R+L CKLQ L+TLD+ C +L CLP
Sbjct: 559 SG---------MRSLP-KQLCKLQN--------LQTLDLQYCTKLC----CLPKETSKLG 596
Query: 391 ALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450
+L L +DG + + P + ++ F + Q + L L + ++ L
Sbjct: 597 SLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQ-LGELGNLNLYGSIKISHL 655
Query: 451 VTVE-EHDQQQPELPCRLQFLELSCC----------EGLTRLPQALLTLSSLTEMRIHDC 499
V+ + D ++ L + LS ++ +AL S+LT ++I+
Sbjct: 656 ERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEEVKVLEALKPHSNLTSLKIYGF 715
Query: 500 ASLVSFPQAALPSQLRSVV------IEECD---------ALESLPEAWMQNSNSSLECLA 544
+ P+ S L+++V C LESL W ++ +E +
Sbjct: 716 RG-IHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHW---GSADVEYVE 771
Query: 545 IRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLAL 603
+ FP + PS LR + I +L+ L + + P LE + + C L
Sbjct: 772 EVDIDVHSGFPTRIRFPS-LRKLDIWDFGSLKGLLKKEGEEQFP-VLEEMIIHECPFLT- 828
Query: 604 LSRNGNLPQSLK--YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHL 661
LS N SL+ Y K+ S E + + L N L+ ++IS NLK LP L +L+ L
Sbjct: 829 LSSNLRALTSLRICYNKVA-TSFPEEMFKNLAN--LKYLTISRCNNLKELPTSLASLNAL 885
Query: 662 QKIWIFGCPNLESFPEEGLPS-TKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSV 720
+ + I C LES PEEGL + LTEL + C LK LP + +LT+L +LKI CP +
Sbjct: 886 KSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQL 945
Query: 721 VSFPEDGF 728
+ E G
Sbjct: 946 IKRCEKGI 953
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 247/795 (31%), Positives = 366/795 (46%), Gaps = 145/795 (18%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
+L++ L GK++ LVLDDVWNE+ +W+ L GA+G+ ++ TTR V MG
Sbjct: 246 KLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQP 305
Query: 61 YQLKELSDDDC--LDFTR---HQ-----SLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD 110
Y+L LS +DC L R HQ +L +G++IV KCGG+PLAAKTLGG+LR + +
Sbjct: 306 YELSNLSPEDCWFLFMQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKRE 365
Query: 111 PRDWEFVLKTDIWNL--RDSDILPALR---------LKQCFAYSSLFPKDYEFQDEEIIL 159
R+WE V + IWNL +S ILPALR L+QCF Y ++FPKD + E +I
Sbjct: 366 EREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIA 425
Query: 160 LWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASR--FVMHDLINDLARWAA 217
W A GFL + N ++ED+G E EL+ RS FQ+ ++ + F MHDLI+DLA
Sbjct: 426 FWMAHGFLLSKGN-LELEDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLA---- 480
Query: 218 GEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFD 277
+L N S ++R I YDG + SI E + ++ P
Sbjct: 481 --------TSLFSANTS--SSNIRE---INANYDG--YMMSIGFAEVVSSYSP------- 518
Query: 278 ENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCG 337
S+LQ ++ LRV +L N+ LP+ IG+L HLR L+LS
Sbjct: 519 ------SLLQKFVS----LRVLNLRN-SNLNQLPSSIGDLVHLRYLDLS----------- 556
Query: 338 AGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLP------- 390
G PK CKLQ L+TLD+ CD L CLP
Sbjct: 557 -GNFRIRNLPK-------RLCKLQN--------LQTLDLHYCDSL----SCLPKQTSKLG 596
Query: 391 ALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450
+L L +DGC + S+P + + + + R + L L + + L
Sbjct: 597 SLRNLLLDGCS--LTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNLNLYGSISITKL 654
Query: 451 VTV-EEHDQQQPELPCRLQFLELSCCEGL-------TRLPQALLTLSSLTEMRIHDCASL 502
V ++ D ++ L + L L + + +AL S+L + I+
Sbjct: 655 DRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEVLEALKPHSNLKYLEINGFGG- 713
Query: 503 VSFPQAALPSQLRSVV---IEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE--- 556
+ P S L++VV I C+ LP LE L + + ++ V + E
Sbjct: 714 IRLPDWMNQSVLKNVVSIRIRGCENCSCLPPF---GELPCLESLELHTGSADVEYVEDNV 770
Query: 557 --VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYC---------------- 598
PS LR ++I L+ L + + P LE + +C
Sbjct: 771 HPGRFPS-LRKLVIWDFSNLKGLLKMEGEKQFP-VLEEMTFYWCPMFVIPTLSSVKTLKV 828
Query: 599 --SNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNT--SLEEISISVLENLKSLPAD 654
++ +L NL ++L L I D + SL E + + +L+ + IS NLK LP
Sbjct: 829 IVTDATVLRSISNL-RALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTS 887
Query: 655 LHNLHHLQKIWIFGCPNLESFPEEGLPS-TKLTELTIYDCENLKALPNCMHNLTSLLNLK 713
L +L+ L+ + C LES PEEG+ T LTEL++ +C LK LP + +LT+L L
Sbjct: 888 LASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEGLQHLTALTTLT 947
Query: 714 ISECPSVVSFPEDGF 728
I++CP V E G
Sbjct: 948 ITQCPIVFKRCERGI 962
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 181/393 (46%), Gaps = 44/393 (11%)
Query: 9 KKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQLKELSD 68
K+F+L+LDD+W++ +E+ PF + G KIV TTR + RMG D +++ L+
Sbjct: 256 KRFVLLLDDIWSK--VDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAP 313
Query: 69 DDCLD-FTR---------HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVL 118
DD D FT+ H + V + KC GLPLA +G + + ++W +
Sbjct: 314 DDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAI 373
Query: 119 KTDI-----WNLRDSDILPALR----------LKQCFAYSSLFPKDYEFQDEEIILLWTA 163
++ + +ILP L+ LK CF Y +LFP+D+ + +++ W
Sbjct: 374 DVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIG 433
Query: 164 EGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICFR 223
EGF+D+ N K E+ G E + L L + + + + MHD++ ++A W A + +
Sbjct: 434 EGFIDR--NKGKAENQGYEIIGILVRSCLLMEENQETVK--MHDVVREMALWIASDFGKQ 489
Query: 224 MEDTLAGENRQKFS----ESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDEN 279
E+ + Q + E + + ++ + ++ + L T L +N
Sbjct: 490 KENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLITLL------LRKN 543
Query: 280 YLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAG 339
+L + +P L V L R++ +LPNEI L+ L+LSRT+ W P G
Sbjct: 544 FLG-HISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIW-PAGLV 601
Query: 340 QEVDEVFPKLR-TLSLDNCCKLQGTLPRRLLLL 371
+ ++ L T +++ C + G ++L L
Sbjct: 602 ELRKLLYLNLEYTRMVESICGISGLTSLKVLRL 634
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 191/724 (26%), Positives = 302/724 (41%), Gaps = 123/724 (16%)
Query: 9 KKFLLVLDDVWNENYSRWSELSCPFG-AGAAGSKIVVTTRNLVVAERMGADPVYQLKELS 67
K FLL+LDDVW+ +L P + SK+V+T+R L V ++M + ++ L
Sbjct: 216 KNFLLILDDVWHP--IDLDQLGIPLALERSKDSKVVLTSRRLEVCQQMMTNENIKVACLQ 273
Query: 68 DDDCLDFTRHQ--------SLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEF--- 116
+ + + H ++K + + + +C GLPLA T+G LRG+ W+
Sbjct: 274 EKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHTLN 333
Query: 117 VLKTDIWNL-RDSDILPALRL---------KQCFAYSSLFPKDYEFQDEEIILLWTAEGF 166
+LK ++ + I L+L K CF + +LFP+DY + E+I+ W AEG
Sbjct: 334 LLKRSAPSIDTEEKIFGTLKLSYDFLQDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGL 393
Query: 167 LDQEYNGRKMEDLGREFVRELHSRSLFQQS-SYDASRFVMHDLINDLARW---AAGEICF 222
LD +++ M + G V L L + S D + MHD++ D A W + GE
Sbjct: 394 LDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVK--MHDVVRDFAIWFMSSQGEGFH 451
Query: 223 RMEDTLAGEN-----RQKFSESLRHFSYICGEYDGEKRLKS--ICDVEHLRTFLPMELSH 275
+ +AG + KF S++ S + + + RL + I VE L L SH
Sbjct: 452 SL--VMAGRGLIEFPQDKFVSSVQRVSLMANKLE---RLPNNVIEGVETLVLLLQGN-SH 505
Query: 276 FDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIP 335
E V L P LR+ L G R I LP+ NL LR L L K +P
Sbjct: 506 VKE------VPNGFLQAFPNLRILDLSGVR-IRTLPDSFSNLHSLRSLVLRNCKKLRNLP 558
Query: 336 C--------------GAGQEVD---EVFPKLRTLSLDNCCKLQGTLPRRLLL----LETL 374
A +E+ E LR + + N +LQ ++P +L LE L
Sbjct: 559 SLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQ-SIPAGTILQLSSLEVL 617
Query: 375 DITSC-------------DQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAY 421
D+ L + CLP L L I + FS + ++ R +
Sbjct: 618 DMAGSAYSWGIKGEEREGQATLDEVTCLPHLQFLAIKLLDVLSFS--YEFDSLTKRLTKF 675
Query: 422 FWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRL 481
+ L IRS++ IS V V + L + L+L+ CEGL +
Sbjct: 676 QF-----LFSPIRSVSPPGTGEGCLAISDVNVS--NASIGWLLQHVTSLDLNYCEGLNGM 728
Query: 482 PQALLT--LSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSS 539
+ L+T SS M+ S+ FP +L S S + D +L E + N N
Sbjct: 729 FENLVTKSKSSFVAMK---ALSIHYFPSLSLASGCES----QLDLFPNLEELSLDNVN-- 779
Query: 540 LECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESL-PEAWMHNELPATLEHLEVSYC 598
+ S L F + L +L+ + + GC L+ L + + LP L+ ++V C
Sbjct: 780 -----LESIGELNGFLGMRL-QKLKLLQVSGCRQLKRLFSDQILAGTLP-NLQEIKVVSC 832
Query: 599 SNLALLSRNGNLPQ---------SLKYLKIEDCSKLESLA-ERLDNTSLEEISISVLENL 648
L L ++P L +K++ +L SL +R+ SLE + + E+L
Sbjct: 833 LRLEELFNFSSVPVDFCAESLLPKLTVIKLKYLPQLRSLCNDRVVLESLEHLEVESCESL 892
Query: 649 KSLP 652
K+LP
Sbjct: 893 KNLP 896
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 157/619 (25%), Positives = 254/619 (41%), Gaps = 83/619 (13%)
Query: 9 KKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQLKELSD 68
KKF+L+LDD+W + + P+ +G G K+ TT + V RMG D ++ L
Sbjct: 258 KKFVLLLDDIWEK--VELKVIGVPYPSGENGCKVAFTTHSKEVCGRMGVDNPMEISCLDT 315
Query: 69 DDCLDFTR----------HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVL 118
+ D + H + ++ ++ KC GLPLA +G + + ++W
Sbjct: 316 GNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGETMSFKRTIQEWRHAT 375
Query: 119 K-----TDIWNLRDSDILPALRL----------KQCFAYSSLFPKDYEFQDEEIILLWTA 163
+ TD + D +ILP L+ K CF Y SLFP+D+E + E +I W
Sbjct: 376 EVLTSATDFSGMED-EILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWIC 434
Query: 164 EGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICFR 223
EGF+ ++ K + G + + L SL + + D MHD++ ++A W ++
Sbjct: 435 EGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALWIFSDLGKH 494
Query: 224 MEDTL--AGENRQKFSE-----SLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHF 276
E + AG + E +++ S + + EK L S VE + FL
Sbjct: 495 KERCIVQAGIGLDELPEVENWRAVKRMSLMNNNF--EKILGSPECVELITLFL------- 545
Query: 277 DENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPC 336
NY + +P L V L ++ LP EI L L+ L+LS T + E +P
Sbjct: 546 QNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGT-YIERLPH 604
Query: 337 GAGQEVDEVFPKL-RTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSEL 395
G + V KL RT L++ + R L L T L+ +Q L L +
Sbjct: 605 GLHELRKLVHLKLERTRRLESISGISYLSSLRTLRLRDSKTTLDTGLMKELQLLEHLELI 664
Query: 396 QID---GCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQD---------IRSLNWLQISR 443
D G +F P + + Q + R P++ I +L ++ I
Sbjct: 665 TTDISSGLVGELFCYPRVGRCI----QHIYIRDHWERPEESVGVLVLPAIHNLCYISIWN 720
Query: 444 CPQLISLV--TVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCAS 501
C ++ T + + P L + + C+GL L LL +L +R+ C
Sbjct: 721 CWMWEIMIEKTPWKKNLTNPNFS-NLSNVRIEGCDGLKDLTW-LLFAPNLINLRVWGCKH 778
Query: 502 LVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPS 561
L + + + + V+E+ E LP LECL + + L S ALP
Sbjct: 779 L----EDIISKEKAASVLEK----EILP-------FQKLECLNLYQLSELKSIYWNALPF 823
Query: 562 Q-LRTI-IIGGCHALESLP 578
Q LR + I+ C L LP
Sbjct: 824 QRLRCLDILNNCPKLRKLP 842
|
Disease resistance (R) protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K0|DRL9_ARATH Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 224/913 (24%), Positives = 371/913 (40%), Gaps = 191/913 (20%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA-------- 52
EL + L K L+VLDD+W + W E+ P G K+++T+RN +
Sbjct: 262 ELYQLLEMSKSLIVLDDIWKK--EDW-EVIKPIFPPTKGWKLLLTSRNESIVAPTNTKYF 318
Query: 53 ----ERMGAD---PVYQLKELSDDDCLDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL 105
E + D ++Q +D +F + ++++GE+++ CGGLPLA K LGG+L
Sbjct: 319 NFKPECLKTDDSWKLFQRIAFPINDASEFEIDEEMEKLGEKMIEHCGGLPLAIKVLGGML 378
Query: 106 RGRDDPRDWEFV-------LKTDIWNLRDSDI-------------LPALRLKQCFAYSSL 145
+ DW + L N D + LP+ LK CF Y +
Sbjct: 379 AEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNSCNYVLSLSFEELPSY-LKHCFLYLAH 437
Query: 146 FPKDYEFQDEEIILLWTAEG-FLDQEYNGRKMEDLGREFVRELHSRSL-FQQSSYDASRF 203
FP+DYE + E + W AE F + Y+G + D+G ++ EL R++ + SRF
Sbjct: 438 FPEDYEIKVENLSYYWAAEEIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRF 497
Query: 204 V---MHDLINDLARWAAGEICFRMEDTLAGENRQKFSESL--RHFSYICGEYDGEKRLKS 258
+HD++ ++ A E F ++ T + F ++ R Y +Y ++
Sbjct: 498 ETCHLHDMMREVCLLKAKEENF-LQITSNPPSTANFQSTVTSRRLVY---QYPTTLHVEK 553
Query: 259 ICDVEHLRTFLPMELSHFDENYLAWSVLQML------------------LNHLPRLRVFS 300
+ LR+ + + L ++ +++ L++L + L LR S
Sbjct: 554 DINNPKLRSLVVVTLGSWNMAGSSFTRLELLRVLDLVQAKLKGGKLASCIGKLIHLRYLS 613
Query: 301 LCGYRNIFNLPNEIGNLKHLRCLNL-----SRTKWEEWIPCGAGQEVDEVFPKL----RT 351
L Y + ++P +GNLK L LNL SR+ + + G + P L
Sbjct: 614 L-EYAEVTHIPYSLGNLKLLIYLNLHISLSSRSNFVPNVLMGMQELRYLALPSLIERKTK 672
Query: 352 LSLDNCCKLQ----------------GTLPRRLLLLETLDITSCDQLLVTIQCLPALSEL 395
L L N KL+ G + R L +E ++ TS + L +I L L +L
Sbjct: 673 LELSNLVKLETLENFSTKNSSLEDLRGMVRLRTLTIELIEETSLETLAASIGGLKYLEKL 732
Query: 396 QID--GCKR------VVFSSPHLVHAVNVREQAYFWR--SETRLPQDIRSLNWLQISRC- 444
+ID G K +VF VH +R + Y R E P + +L +LQ R
Sbjct: 733 EIDDLGSKMRTKEAGIVFD---FVHLKRLRLELYMPRLSKEQHFPSHLTTL-YLQHCRLE 788
Query: 445 --PQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTE--------- 493
P I ++ + + + + S C G +L + L++S L E
Sbjct: 789 EDPMPILEKLLQLKELELGHKSFSGKKMVCSSC-GFPQLQK--LSISGLKEWEDWKVEES 845
Query: 494 -------MRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIR 546
+ I DC L P LPS L ++ +++C + +P
Sbjct: 846 SMPLLLTLNIFDCRKLKQLPDEHLPSHLTAISLKKCGLEDPIP----------------- 888
Query: 547 SCNSLVSFPEVALPSQLRTIII--GGCHALESLPEAWMHNELPATLEHLEVSYCSNLALL 604
+ LV E++L I++ GG P+ +H + L+ LE +
Sbjct: 889 TLERLVHLKELSLSELCGRIMVCTGG-----GFPQ--LHKLDLSELDGLE-------EWI 934
Query: 605 SRNGNLPQSLKYLKIEDCSKLESLA------ERLDNTSLEEISISVLENLKSLPADLHNL 658
+G++P+ L L+I C KL+ L + L T +EE ++ S+P
Sbjct: 935 VEDGSMPR-LHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEEWEEGMIVKQGSMPL----- 988
Query: 659 HHLQKIWIFGCPNLESFPEEGLPS--TKLTELTIYDCEN-LKALPNCMHNLTSLLNLKIS 715
L ++I+ CP L E+ PS T + L +Y E+ ++ L +H L S
Sbjct: 989 --LHTLYIWHCPKLPG--EQHFPSHLTTVFLLGMYVEEDPMRILEKLLHLKNVSLFQSFS 1044
Query: 716 ECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP- 774
V S GFP LQ L + +++ + ++E GS L G CP+L P
Sbjct: 1045 GKRMVCS--GGGFP-QLQKLSIREIEWEEWIVEQGS---MPLLHTLYIGVCPNLKELPDG 1098
Query: 775 --FPASLTNLWIS 785
F SL NL +S
Sbjct: 1099 LRFIYSLKNLIVS 1111
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 839 | ||||||
| 359495896 | 1548 | PREDICTED: putative disease resistance p | 0.971 | 0.526 | 0.368 | 1e-114 | |
| 147821539 | 1094 | hypothetical protein VITISV_006408 [Viti | 0.887 | 0.680 | 0.364 | 1e-113 | |
| 297742877 | 861 | unnamed protein product [Vitis vinifera] | 0.868 | 0.846 | 0.365 | 1e-104 | |
| 297745513 | 1243 | unnamed protein product [Vitis vinifera] | 0.980 | 0.662 | 0.344 | 1e-104 | |
| 359495054 | 1347 | PREDICTED: putative disease resistance R | 0.972 | 0.605 | 0.334 | 1e-104 | |
| 225465962 | 1290 | PREDICTED: putative disease resistance R | 0.973 | 0.633 | 0.332 | 1e-101 | |
| 357458627 | 1289 | NBS-LRR type disease resistance protein | 0.971 | 0.632 | 0.328 | 1e-101 | |
| 224059590 | 1381 | cc-nbs-lrr resistance protein [Populus t | 0.955 | 0.580 | 0.342 | 1e-100 | |
| 357458569 | 1234 | NBS-LRR type disease resistance protein | 0.972 | 0.661 | 0.330 | 1e-100 | |
| 297736335 | 2534 | unnamed protein product [Vitis vinifera] | 0.946 | 0.313 | 0.330 | 2e-99 |
| >gi|359495896|ref|XP_003635111.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 357/970 (36%), Positives = 491/970 (50%), Gaps = 155/970 (15%)
Query: 2 LKKQLFGKKFLLVLDDVWN-ENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
L K L GK+FLLVLDDVWN NY +WS L PF +GA GSKIVVTTR+ VA M AD
Sbjct: 282 LSKILVGKRFLLVLDDVWNINNYEQWSHLQTPFKSGARGSKIVVTTRHTNVASLMRADNY 341
Query: 61 YQL-KELSDDDCLD-FTRHQ----------SLKEVGEQIVIKCGGLPLAAKTLGGLLRGR 108
+ L K LS+DDC + F +H +L+ + +I+ KC GLPLAAK LGGLLR +
Sbjct: 342 HHLLKPLSNDDCWNVFVKHAFENKNIDEHPNLRLLDTRIIEKCSGLPLAAKVLGGLLRSK 401
Query: 109 DDPRDWEFVLKTDIWNLRDSDILPALRL---------KQCFAYSSLFPKDYEFQDEEIIL 159
WE VL + +WN S ++P LRL K+CFAY +LFP+DY+F+ +E+IL
Sbjct: 402 PQ-NQWEHVLSSKMWN--RSGVIPVLRLSYQHLPSHLKRCFAYCALFPRDYKFEQKELIL 458
Query: 160 LWTAEGFL-DQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAG 218
LW AEG + + E +MEDLG ++ EL SR FQ SS S+F+MHDLINDLA+ A
Sbjct: 459 LWMAEGLIHEAEEEKCQMEDLGADYFDELLSRCFFQPSSNSKSQFIMHDLINDLAQDVAT 518
Query: 219 EICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTF--LPMELSHF 276
EICF + EN K SE RH S+I EYD K+ + + E LRTF LP+ +++
Sbjct: 519 EICFNL------ENIHKTSEMTRHLSFIRSEYDVFKKFEVLNKPEQLRTFVALPVTVNNK 572
Query: 277 DENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPC 336
+ YL+ VL LL L +LRV SL GY I LPN IG+LKHLR LNLS TK +W+P
Sbjct: 573 MKCYLSTKVLHGLLPKLIQLRVLSLSGYE-INELPNSIGDLKHLRYLNLSHTKL-KWLP- 629
Query: 337 GAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLET---LDITSCDQL---------LV 384
+ V ++ L++L L NC +L LP ++ L LDI+ L LV
Sbjct: 630 ---EAVSSLY-NLQSLILCNCMELI-KLPICIMNLTNFRHLDISGSTMLEEMPPQVGSLV 684
Query: 385 TIQCLPAL--------------------SELQIDGCKRVVFSSPHLVHAVNVRE------ 418
+Q L EL I G + V S P VN++E
Sbjct: 685 NLQTLSMFFLSKDNGSRIKELKNLLNLRGELAIIGLENV--SDPRDAMYVNLKEIPNIED 742
Query: 419 QAYFWRSETRLPQD----IRSLNWLQISRCPQLISLV----TVEEHDQQQPELPCRLQFL 470
W ++ ++ I L WLQ + + + + + H P ++ L
Sbjct: 743 LIMVWSEDSGNSRNESTVIEVLKWLQPHQSLKKLEIAFYGGSKFPHWIGDPSF-SKMVCL 801
Query: 471 ELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVS-----FPQAALPSQ------------ 513
EL+ C+ T LP AL L L ++ I + S + A P Q
Sbjct: 802 ELTDCKNCTSLP-ALGGLPFLKDLVIEGMNQVKSIGDGFYGDTANPFQSLEYLRFENMAE 860
Query: 514 -----------LRSVVIEECDALESLPEAWMQNSN-SSLECLAIRSCNSLVSFPEVALPS 561
L + I ECD L L + N L L I C+ +VS E LP
Sbjct: 861 WNNWLAQRLMVLEDLGINECDELACLRKPGFGLENLGGLRRLWINGCDGVVSLEEQGLPC 920
Query: 562 QLRTIIIGGCHALESLPEAW----------MHN----------ELPATLEHLEVSYCSNL 601
L+ + + GC LE LP A +HN LP L L V C L
Sbjct: 921 NLQYLEVKGCSNLEKLPNALYTLASLAYTIIHNCPKLVSFPETGLPPMLRDLSVRNCEGL 980
Query: 602 ALLSRNGNLPQS--LKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLP--ADLHN 657
L +G + S L+ ++I DC L +R +L+ + I E L+SLP D +N
Sbjct: 981 ETLP-DGMMINSCALERVEIRDCPSLIGFPKRELPVTLKMLIIENCEKLESLPEGIDNNN 1039
Query: 658 LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKISE 716
L+K+ + GCP+L+S P PST L L+I+ C L+++P N + NLTSL L I
Sbjct: 1040 TCRLEKLHVCGCPSLKSIPRGYFPST-LETLSIWGCLQLQSIPGNMLQNLTSLQFLHICN 1098
Query: 717 CPSVVSFPEDGFPTNLQSLDVHDLKISK-PLLEWGSNRFTSLRRFTIWGGCPDLVSPPP- 774
CP VVS PE NL++L + D + + PL WG TSL I G PDL+S
Sbjct: 1099 CPDVVSSPEAFLNPNLKALSITDCENMRWPLSGWGLRTLTSLDELGIHGPFPDLLSFSGS 1158
Query: 775 ---FPASLTNLWISDMPDLESISSIG-ENLTSLKTLRLSDCPKLKYF-SEQGLPKSLLQL 829
P SLT L + ++ +L+S++S+G +L SLK+L CPKL+ F ++GLP +L +L
Sbjct: 1159 HLLLPTSLTYLGLVNLHNLKSVTSMGLRSLMSLKSLEFYSCPKLRSFVPKEGLPPTLARL 1218
Query: 830 HIYACPLIEE 839
I+ CP++++
Sbjct: 1219 VIWECPILKK 1228
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147821539|emb|CAN67781.1| hypothetical protein VITISV_006408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 339/929 (36%), Positives = 475/929 (51%), Gaps = 184/929 (19%)
Query: 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADP-V 60
L + L GK+FL+VLDD+WNE+Y W+ L PF AG GSKI+VTTR VA MG + +
Sbjct: 230 LSEALRGKRFLIVLDDLWNEDYGDWNCLRSPFWAGGKGSKIIVTTRCKGVATMMGGEKNL 289
Query: 61 YQLKELSDDDC-LDFTRHQ----------SLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD 109
Y+LK LS +DC L F +H SL +G++IV KC GLPLAAK LGGLLR +
Sbjct: 290 YELKHLSYEDCWLVFEKHAFQNRSINLHPSLVLIGKKIVEKCAGLPLAAKALGGLLRTKL 349
Query: 110 DPRDWEFVLKTDIWNLRD---SDILPALRL---------KQCFAYSSLFPKDYEFQDEEI 157
+ +WE +L +WNL+ I+PALRL K+CFAY ++FPK+YEF +E+
Sbjct: 350 EEEEWENILNRKVWNLQGEKCGSIIPALRLSYNHLPSHLKRCFAYCAIFPKNYEFMVKEL 409
Query: 158 ILLWTAEGFLD--QEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARW 215
ILLW AEG + Q+ N ++MEDLG ++ RE+ S S FQ S+ + SRFVMHD I+DLA++
Sbjct: 410 ILLWMAEGLIQCSQDINKQEMEDLGHDYFREMLSMSFFQPSNRNISRFVMHDFIHDLAQF 469
Query: 216 AAGEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTF--LPMEL 273
AGEICF +ED L + SE +R S+I +D + + V HL TF LP+
Sbjct: 470 VAGEICFHLEDRLGIDC--SISEKIRFSSFIRCYFDVFNKFEFFHKVGHLHTFIALPVCS 527
Query: 274 SHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLR------CL---- 323
S F +YL+ +L L+ L LRV +L GY +I +PN IG+LKHLR CL
Sbjct: 528 SPFLPHYLSNKMLHELVPKLVTLRVLALSGY-SISEIPNSIGDLKHLRKCISLPCLGQLP 586
Query: 324 ---NLSRTKWEEWIPCG----AGQEVD---------------------------EVFPKL 349
NL EE G G + E +P +
Sbjct: 587 LLKNLRIEGMEEVKKVGVEFLGGPSLSIKAFPSLESLSFVNMPKWVNWEHSSSLESYPHV 646
Query: 350 RTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPH 409
+ L++ NC +L LP L L L+I C QL + + LP+L +L + C +V S
Sbjct: 647 QQLTIRNCPQLIKKLPTPLPSLIKLNIWKCPQLGIPLPSLPSLRKLDLQECNDLVVRSG- 705
Query: 410 LVHAVNV-REQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQ 468
+ +++ R Y RL Q + + LP L+
Sbjct: 706 -IDPISLTRFTIYGISGFNRLHQGLMAF--------------------------LPA-LE 737
Query: 469 FLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFP---QAALPSQLRSVVIEECDAL 525
L +S C LT L L + I DC LVS + LP L+ + I +CD L
Sbjct: 738 VLRISECGELTYLSDGSKNL-----LEIMDCPQLVSLEDDEEQGLPHSLQYLEIGKCDNL 792
Query: 526 ESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWM-HN 584
E LP +QN +SLE L+I +C L ++ L R I LESLP+ M H+
Sbjct: 793 EKLPNG-LQNL-TSLEELSIWACPKLKESYQLLL----RNCIYVTAKNLESLPDGVMKHD 846
Query: 585 ELP----ATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL--DNTSLE 638
P + L+ L++ CS+L R G P +LK L+I CS+LE + E++ D+ SLE
Sbjct: 847 SSPQHNTSGLQVLQIWRCSSLKSFPR-GCFPPTLKLLQIWSCSQLELMIEKMFHDDNSLE 905
Query: 639 EISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA 698
+ ++V NLKSLP L+NL LQ I C NLK+
Sbjct: 906 CLDVNVNSNLKSLPDCLYNLRRLQ---------------------------IKRCMNLKS 938
Query: 699 LPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLR 758
LP+ M NLTSL++L+I++C + I L +WG +R TSL+
Sbjct: 939 LPHQMRNLTSLMSLEIADCGN----------------------IQTSLSKWGLSRLTSLK 976
Query: 759 RFTIWGGCPDLVS----PPPF--PASLTNLWISDMPDLESISSIG-ENLTSLKTLRLSDC 811
F+I G P++VS P PF P++LT L I +LES++S+ LTSL+ L +S C
Sbjct: 977 SFSIAGIFPEVVSFSNDPDPFLLPSTLTYLSIERFKNLESLTSLALHTLTSLQHLWISGC 1036
Query: 812 PKLKYF-SEQGLPKSLLQLHIYACPLIEE 839
PKL+ F S +GL ++ QL+I CPL+ +
Sbjct: 1037 PKLQSFLSREGLSDTVSQLYIRDCPLLSQ 1065
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742877|emb|CBI35642.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 320/876 (36%), Positives = 442/876 (50%), Gaps = 147/876 (16%)
Query: 1 ELKKQLFGKKFLLVLDDVWN-ENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADP 59
+L L GK+FLLVLDDVWN NY RW+ L PF +GA GSKI VTTR+ VA M AD
Sbjct: 45 KLSNNLAGKRFLLVLDDVWNINNYERWNHLQTPFKSGARGSKIAVTTRHGNVASLMRADS 104
Query: 60 VYQL-KELSDDDCLDF-----------TRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRG 107
+ L K LS+DDC + H +L+ + ++IV KC GLPLAAK LGGLLR
Sbjct: 105 FHHLLKPLSNDDCWNVFVKHAFENKNANEHPNLELIQQRIVEKCSGLPLAAKMLGGLLRS 164
Query: 108 RDDPRD-WEFVLKTDIWNLRDSDILPALRL---------KQCFAYSSLFPKDYEFQDEEI 157
+P+D WE VL IWN S + P LRL K+CFAY +LF KDYEF+ +E+
Sbjct: 165 --EPQDRWERVLSRKIWN--KSGVFPVLRLSYQHLPSHLKRCFAYCALFSKDYEFKQKEL 220
Query: 158 ILLWTAEGFLDQ--EYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARW 215
ILLW A + Q E N + EDLG ++ EL S+ FQ SS S F+MHDLINDLA+
Sbjct: 221 ILLWMAGDLIHQAEEDNCQMEEDLGADYFNELLSKCFFQPSSDSKSEFIMHDLINDLAQE 280
Query: 216 AAGEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTF--LPMEL 273
A EICF E N K S+ RH S++ GE D K+ + + + +RTF LP+ L
Sbjct: 281 VATEICFNFE------NIYKVSQRTRHLSFVRGEQDVFKKFEVLNKPKQIRTFVALPITL 334
Query: 274 SHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEW 333
+ + YL+ VL LL L +LRV SL GY I LP+ IG+LKHLR LNL TK ++
Sbjct: 335 DNKKKCYLSNKVLNGLLPKLGQLRVLSLSGYE-INELPDSIGDLKHLRFLNLFSTKIKQL 393
Query: 334 -------------IPCGAGQEVDEVFP-----KLRTLSLDNCCKLQGTLPR--------- 366
I C Q ++ LR L + L+ P+
Sbjct: 394 PKTVSGLYNLQSLILCNCVQLINLPMSIINLINLRHLDIRGSTMLKKMPPQHRDRDPSFS 453
Query: 367 RLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSE 426
+++ L+ ++ +C L + LP L L I+G V ++ ++ Y E
Sbjct: 454 KMVYLDLINCKNCTSL-PALGGLPFLKNLVIEGMNEVK----------SIGDEFY---GE 499
Query: 427 TRLPQDIRSLNWLQISRCPQLISLVTVE-EHDQQQPELPCRLQFLELSCCEGLTRLPQAL 485
T R+L L+ + PQ L+ + H++ Q PC + + + C L
Sbjct: 500 T--ANSFRALEHLRFEKMPQWKDLLIPKLVHEETQALFPCLRELITIKC--------PKL 549
Query: 486 LTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545
+ LS H+ SLV+ + C LE LP A ++ +SL L I
Sbjct: 550 INLS-------HELPSLVTLHWE----------VNGCYNLEKLPNAL--HTLTSLTDLLI 590
Query: 546 RSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLS 605
+C +L+SFPE LP LR + + C LE+LP+ M N LE++E+ C
Sbjct: 591 HNCPTLLSFPETGLPPMLRPLGVRNCRVLETLPDGMMMNS--CILEYVEIKECPYFIEFP 648
Query: 606 RNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIW 665
+ G LP +LK L IEDC +LESL E +D+ +N L+ +
Sbjct: 649 K-GELPATLKKLAIEDCWRLESLLEGIDS---------------------NNTCRLEWLH 686
Query: 666 IFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKISECPSVVSFP 724
++GCP+L+S P PST L L+I+DCE L+++P N + NLTSL L I CP VVS P
Sbjct: 687 VWGCPSLKSIPRGYFPST-LEILSIWDCEQLESIPGNLLQNLTSLRLLNICNCPDVVSSP 745
Query: 725 EDGFPTNLQSLDVHDLKISK-PLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPAS----- 778
E NL+ L + D + + P WG + TSL I G DL+S F S
Sbjct: 746 EAFLNPNLKELCISDCENMRWPPSGWGLDTLTSLGELFIQGPFRDLLS---FSGSHLLLP 802
Query: 779 --LTNLWISDMPDLESISSIG-ENLTSLKTLRLSDC 811
LT L + ++ +L+SI+S ++L SLK L C
Sbjct: 803 TSLTTLRLGNLRNLKSIASTSVQSLISLKNLEFHIC 838
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745513|emb|CBI40678.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 335/972 (34%), Positives = 467/972 (48%), Gaps = 149/972 (15%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
EL++ L KKFLLVLDD+WNE+Y W L GA+GSKI+ T R+ V+ M
Sbjct: 244 ELREILMRKKFLLVLDDIWNEDYCSWDLLRGALRYGASGSKIIATMRSKKVSSIMHPIHT 303
Query: 61 YQLKELS-DDDCLDFTRHQ----------SLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD 109
+ L+ LS +D L F +H +LK +GE+IV KC GLPLAAKT+GGLL+
Sbjct: 304 HHLELLSYEDSWLLFAKHAFSNEDTCAHPTLKAIGEKIVEKCNGLPLAAKTIGGLLKSET 363
Query: 110 DPRDWEFVLKTDIWNLRDSDILPALRL---------KQCFAYSSLFPKDYEFQDEEIILL 160
D +DW VL ++IW+ ++ ILPALRL K CFAY SLF K+YEF E ++ L
Sbjct: 364 DTKDWNQVLNSEIWDFPNNGILPALRLSYHYLPAHLKPCFAYCSLFHKNYEFDKETLVRL 423
Query: 161 WTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEI 220
W AEGF+ Q ++E +G + +L SRSLFQQS + SRF+MH+LIN LA++ +GE
Sbjct: 424 WIAEGFVQQPKAEERIEVVGNGYFTDLLSRSLFQQSGGNESRFIMHELINGLAKFVSGEF 483
Query: 221 CFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMEL-SHFDEN 279
F +ED EN+QK S RH SY G+YD ++ + + + + LRTFLP+ L H D
Sbjct: 484 SFSLED----ENQQKISRKTRHMSYFRGKYDASRKFRLLYETKRLRTFLPLNLPPHNDRC 539
Query: 280 YLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAG 339
YL+ ++ L+ L LRV SL Y+ I L + IGNL+ L L+LS T +P
Sbjct: 540 YLSTQIIFDLVPMLRCLRVLSLSHYK-ITELSDSIGNLRKLAYLDLSYTGLRN-LPDSTC 597
Query: 340 QEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLETLDITSCDQLLVTIQCLPALSELQ 396
+ L+TL L NCC L LP +L+ L LDI+ + + Q + L LQ
Sbjct: 598 NLYN-----LQTLLLSNCCSLS-ELPANMGKLINLRHLDISQTNVKEMPTQ-IGRLGSLQ 650
Query: 397 IDGCKRVVFSSPHLVHAVNV-----REQAYFWRSETRLPQDIRSLNWLQISRCPQLISLV 451
V S + + V R+ + L D N L+ ++L
Sbjct: 651 TLSTFVVGKHSGARIKELGVLRNLWRKLSILSLQNVVLTMDAHEAN-LEGKEHLDALALE 709
Query: 452 TVEEHDQQQPE------LPCRLQFLELSC-CEGLTRLPQALL--TLSSLTEMRIHDCASL 502
++ D Q E L + ELS G TR P L + S+L + + DC
Sbjct: 710 WSDDTDDSQNERVVLENLKPHSKLKELSIKFYGGTRFPDWLGDPSFSNLLALCLSDCKYC 769
Query: 503 VSFPQ-AALPS----------QLRSVVIE-------ECDALESLP----------EAWMQ 534
+S P LPS ++ V +E C SL E W
Sbjct: 770 LSLPPLGQLPSLEKLYIVGANSVKKVGLEFYGHGSSSCKPFGSLKTLVFEKMMEWEEWFI 829
Query: 535 NSNS-----SLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEA------WMH 583
+++ SL+ L I C L+ LP R I + SLP W+H
Sbjct: 830 SASDGKEFPSLQELYIVRCPKLIGRLPSHLPCLTRLEITECEKLVASLPVVPAIRYMWLH 889
Query: 584 N----------ELP-------ATLEHLEVSYCSNLALLSRN-GNLPQSLKYLKIEDCSKL 625
LP L HL +S C +L G L +LK L I +C KL
Sbjct: 890 KLQIEGLGAPESLPEGMMCRNTCLVHLTISNCPSLVSFPMGCGGLLTTLKVLYIHNCRKL 949
Query: 626 E-SLAERL---DNTSLEEISIS-VLENLKSLP---------------------ADLHNLH 659
E L+E + +SLE + I ++L+ P + L LH
Sbjct: 950 ELPLSEEMIQPQYSSLETLKIERSCDSLRCFPLGFFTKLIHLHIEKCRHLEFLSVLEGLH 1009
Query: 660 H-----LQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHN-LTSLLNLK 713
H L+ +I CP SFP GLP+ L +Y C+ LK+LPN MH LTSL + +
Sbjct: 1010 HGGLTALEAFYILKCPEFRSFPRGGLPTPNLRWFGVYYCKKLKSLPNQMHTLLTSLQSFE 1069
Query: 714 ISECPSVVSFPEDGFPTNLQSLDVHDL-KISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772
I +CP ++SFPE G P++L L + K+ EWG R SL+ F+I GC
Sbjct: 1070 IFDCPQLLSFPEGGLPSSLSELSIWSCNKLMTCRTEWGLQRLASLKHFSISEGCEGDWGV 1129
Query: 773 PPF------PASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE-QGLPKS 825
F P++LT+L I + +L+SI +LTSLK L+L +CP+L+ E + LP S
Sbjct: 1130 ESFLEELQLPSTLTSLRIYNFGNLKSIDKGLRHLTSLKKLKLFNCPELRSLPEVEALPPS 1189
Query: 826 LLQLHIYACPLI 837
L L+I CPLI
Sbjct: 1190 LSFLNIQECPLI 1201
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495054|ref|XP_002267622.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 331/991 (33%), Positives = 456/991 (46%), Gaps = 175/991 (17%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERM-GADP 59
+LK ++ K+F LVLDDVWNEN + W L PF GA GS ++VTTRN VA M
Sbjct: 353 KLKNEIKEKRFFLVLDDVWNENPNHWDVLQAPFRVGAQGSVVIVTTRNENVASIMRTTTS 412
Query: 60 VYQLKELSDDDC-----------LDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGR 108
YQL +L+++ C LD Q+L+ +G +I KC GLPL AKTLGGLLR +
Sbjct: 413 SYQLCQLTEEQCWLLFAQAAFTNLDSNECQNLQSIGRKIAKKCKGLPLVAKTLGGLLRSK 472
Query: 109 DDPRDWEFVLKTDIWNLRD--SDILPAL---------RLKQCFAYSSLFPKDYEFQDEEI 157
D W VL +IW+L + S ILPAL +LK+CFAY S+FPKDY F+ E++
Sbjct: 473 QDSTAWNEVLNNEIWDLSNEKSSILPALNLSYHYLPTKLKRCFAYCSIFPKDYVFEKEKL 532
Query: 158 ILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAA 217
+LLW AEGFLD G +E+ G L SRS FQQ + S+FVMHDLI+DLA++ +
Sbjct: 533 VLLWMAEGFLDGSKRGETVEEFGSICFDNLLSRSFFQQYHNNDSQFVMHDLIHDLAQFTS 592
Query: 218 GEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPME--LSH 275
G+ CFR+E E + + S+ +RH SY + K K ++ +LRTFLP+ +
Sbjct: 593 GKFCFRLE----VEQQNQISKDIRHSSYTWQHFKVFKEAKLFLNIYNLRTFLPLPPYSNL 648
Query: 276 FDENYLAWSVLQMLLNHLPRLRVFSLCGYR------------NIFNLPNEIGNLKHLRCL 323
YL+ + LL+ L LRV SL R + +P E+ +K+LR L
Sbjct: 649 LPTLYLSKEISHCLLSTLRCLRVLSLSLGRLINLRHLKIDGTKLERMPMEMSRMKNLRTL 708
Query: 324 NLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLL 383
G +++ + L L N + L + E L DQL
Sbjct: 709 TAFVVGKHTGSRVGELRDLSHLSGTLTIFKLQNVVDARDALESNMKGKECL-----DQLE 763
Query: 384 VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQ-----DIRSLNW 438
+ A++ D + PH N++E + + P ++
Sbjct: 764 LNWDDDNAIAGDSHDAASVLEKLQPH----SNLKELSIGCYYGAKFPSWLGEPSFINMMR 819
Query: 439 LQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL--------LTLSS 490
LQ+S C SL + + Q + L+ E P + L
Sbjct: 820 LQLSNCKNCASLPPLGQLRSLQNLSIVKNDVLQKVGQEFYGNGPSSFKPFGSLQTLVFKE 879
Query: 491 LTEMRIHDC--ASLVSFP-------------QAALPSQ---LRSVVIEECDALE-SLPEA 531
++E DC A FP + LP L S+VI EC L LPEA
Sbjct: 880 MSEWEEWDCFRAEGGEFPRLNELRIESCPKLKGDLPKHLPVLTSLVILECGQLVCQLPEA 939
Query: 532 WMQNSNSSLECLAIRSCNSLVSFPEVALPS------------------------QLRTII 567
S++ L ++ C+ +V V LPS LR ++
Sbjct: 940 ------PSIQKLNLKECDEVVLRSVVHLPSINELEVSNICSIQVELPAILLKLTSLRNLV 993
Query: 568 IGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQ-SLKYLKIEDCSKLE 626
I C +L SLPE LP LE L + C L L SL+ L IEDC L
Sbjct: 994 IKECQSLSSLPEM----GLPPMLETLRIEKCHILETLPEGMTQNNISLQRLYIEDCDSLT 1049
Query: 627 SL----------------------AERLDN-------------------------TSLEE 639
SL E N T LE
Sbjct: 1050 SLPIISSLKSLEIKQCRKVELPIPEETTQNYYPWLTYFRIRRSCDSLTSFPLAFFTKLET 1109
Query: 640 ISISVLENLKS--LPADLHN--LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN 695
+ I NL+S +P LHN L LQ+I I+ CPNL SFP+ GLP++ L +L I +C+
Sbjct: 1110 LYIGDCTNLESFYIPDGLHNMDLTSLQRIHIWNCPNLVSFPQGGLPASNLRDLCIDNCKK 1169
Query: 696 LKALPNCMHN-LTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHD-LKISKPLLEWGSNR 753
LK+LP MH LTSL +L I +C +VSFPE G PTNL SLD+ K+ + EWG
Sbjct: 1170 LKSLPQRMHTLLTSLEDLDIYDCSEIVSFPEGGLPTNLSSLDIGSCYKLMESRKEWGLQT 1229
Query: 754 FTSLRRFTIWGGCPDLVSPPP----FPASLTNLWISDMPDLESISSIG-ENLTSLKTLRL 808
SLR I GG L S P++L + I D PDL+ + ++G +NLTSL+ L +
Sbjct: 1230 LPSLRGLVIDGGTGGLESFSEEWLLLPSTLFSFSIFDFPDLKYLDNLGLQNLTSLEILEM 1289
Query: 809 SDCPKLKYFSEQGLPKSLLQLHIYACPLIEE 839
+C KLK F +QGLP SL L IY CP++++
Sbjct: 1290 RNCVKLKSFPKQGLPSSLTALQIYGCPVLKK 1320
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465962|ref|XP_002269685.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 338/1016 (33%), Positives = 476/1016 (46%), Gaps = 199/1016 (19%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
+LK ++ K+F LVLDDVWNEN + W L PF GA GS ++VTTRN VA M P
Sbjct: 271 KLKNEMKEKRFFLVLDDVWNENLNHWDVLQAPFYVGAQGSVVLVTTRNENVASIMRTRPS 330
Query: 61 YQLKELSDDDC-LDFTRH----------QSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD 109
YQL L+D++C L F++ Q+L+ +G +I KC GLPLA KTL GLLR +
Sbjct: 331 YQLGHLTDEECWLLFSQQAFKNLNSDACQNLESIGRKIAKKCKGLPLAVKTLAGLLRSKQ 390
Query: 110 DPRDWEFVLKTDIWNL--RDSDILPALRL---------KQCFAYSSLFPKDYEFQDEEII 158
D W VL D+W+L + ILPAL L K+CFAY S+FPKDY F+ E+++
Sbjct: 391 DSTAWNEVLNNDVWDLPNEQNSILPALNLSYYYLPTTLKRCFAYCSIFPKDYVFEKEKLV 450
Query: 159 LLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAG 218
LLW AEGFLD G +E+ G L SRS FQ+ + S+FVMHDLI+DL ++ +G
Sbjct: 451 LLWMAEGFLDGSKRGETIEEFGSMCFDNLLSRSFFQRYHNNDSQFVMHDLIHDLTQFTSG 510
Query: 219 EICFRMEDTLAGE--NRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPM-ELSH 275
+ CFR L GE N+ + + +RH SYI K++KS D+ LRTFL + S
Sbjct: 511 KFCFR----LVGEQQNQIQIYKEIRHSSYIWQYSKVFKKVKSFLDIYSLRTFLALPPYSD 566
Query: 276 FDEN-YLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWI 334
N YL+ V LL+ L LRV SL Y +I LP+ I NLKHLR L+LS T
Sbjct: 567 AARNFYLSKEVSHCLLSTLRCLRVLSLSHY-DIEELPHSIKNLKHLRYLDLSHTSI---- 621
Query: 335 PCGAGQEVDEVFPKLRTLSLDNCCKLQG--TLPRRLLLLETLDI--TSCDQLLVTIQCLP 390
+ + +F L+TL L C L T RL+ L L I T +++ + + +
Sbjct: 622 -ITLPESITTLF-NLQTLMLSECRYLVDLPTKMGRLINLRHLKIDGTKLERMPMEMSRMK 679
Query: 391 ALSELQIDGCKRVVFSS-------PHLVHAV------NVREQAYFWRSETRLPQ--DIRS 435
L L + S HL + NV + + S + + D
Sbjct: 680 NLRTLTTFVVGKHTGSRVGELRDLSHLSGTLTIFKLQNVMDARDAFESNMKGKECLDKLE 739
Query: 436 LNWLQISRCPQLISLVTVEEHD------QQQPELPCRLQFLELSCCEGLTRLPQALL--T 487
LNW + + + + HD + QP L+ L + C G + P L +
Sbjct: 740 LNW-------EDDNAIAGDSHDAASVLEKLQPH--SNLKELSIGCYYG-AKFPSWLGEPS 789
Query: 488 LSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSS-------- 539
++ +++ +C + S P L+++ I + D L+ + + + N SS
Sbjct: 790 FINMVSLQLFNCKNCASLPPLGQLRSLQNLSIVKNDVLQKVGQEFYGNGPSSFKPFGSLQ 849
Query: 540 -------------------------LECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHAL 574
L L I SC L LP +I+ +
Sbjct: 850 TLVFEEISEWEEWDCFGVEGGEFPHLNELRIESCPKLKGDLPKHLPVLTSLVILECGQLV 909
Query: 575 ESLPEAWMHNELP-------ATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLES 627
LPEA +L +L L + C +L+ L G LP L+ L+IE C LE+
Sbjct: 910 CQLPEAPSIQKLNLKECDELTSLRKLVIKECQSLSSLPEMG-LPPMLETLEIEKCHILET 968
Query: 628 LAERL--DNTSLEEISISVLENLKSLP--ADLHNLH------------------------ 659
L E + +NTSL+ + I ++L SLP + L +L
Sbjct: 969 LPEGMTQNNTSLQSLYIEDCDSLTSLPIISSLKSLEIKQCRKVELPLPEETTQNYYPWLA 1028
Query: 660 --------------------HLQKIWIFGCPNLESF------------------------ 675
L+ + I+ C NLESF
Sbjct: 1029 YLRINRSCDSLTSFPLAFFTKLKTLHIWNCENLESFYIPDGLRNMDLTSLHKIKIDDCPN 1088
Query: 676 ----PEEGLPSTKLTELTIYDCENLKALPNCMHN-LTSLLNLKISECPSVVSFPEDGFPT 730
P+ GL ++ L EL I +C+ LK+LP MH LTSL L IS+CP +VSFPE G PT
Sbjct: 1089 LVSFPQGGLRASNLRELFISNCKKLKSLPQRMHTLLTSLDKLWISDCPEIVSFPEGGLPT 1148
Query: 731 NLQSLDVHD-LKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP-----FPASLTNLWI 784
NL SL + K+ + EWG SLRR I GG + P++L +L I
Sbjct: 1149 NLSSLHIGSCYKLMESRKEWGLQTLPSLRRLVIVGGTEGGLESFSEEWLLLPSTLFSLDI 1208
Query: 785 SDMPDLESISSIG-ENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPLIEE 839
SD PDL+S+ ++G ENLTSL+ L + +C KLK F +QGLP SL L IY CPL+++
Sbjct: 1209 SDFPDLKSLDNLGLENLTSLERLVIWNCDKLKSFPKQGLPASLSVLEIYRCPLLKK 1264
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458627|ref|XP_003599594.1| NBS-LRR type disease resistance protein [Medicago truncatula] gi|355488642|gb|AES69845.1| NBS-LRR type disease resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 322/979 (32%), Positives = 470/979 (48%), Gaps = 164/979 (16%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
EL K L K+FLLVLDD+WN+NY+ W EL P G GS++++TTR VAE P+
Sbjct: 266 ELNKNLRDKRFLLVLDDLWNDNYNDWDELVTPLINGKKGSRVIITTRQQKVAEVAHTFPI 325
Query: 61 YQLKELSDDDCLDF-------------TRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRG 107
+++ LSDDDC ++ +L+E+G +I KCGGLP+AAKTLGG+LR
Sbjct: 326 HKVDPLSDDDCWSLLSKHAFGSEDRRGRKYPNLEEIGRKIAKKCGGLPIAAKTLGGILRS 385
Query: 108 RDDPRDWEFVLKTDIWNLRDSDILPALR---------LKQCFAYSSLFPKDYEFQDEEII 158
+ D ++W +L +DIWNL + ILPALR LK+CFAY S+FPKD+ +E+I
Sbjct: 386 KVDAKEWTAILNSDIWNLPNDTILPALRLSYQYLPSHLKRCFAYCSIFPKDFPLDKKELI 445
Query: 159 LLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDAS-RFVMHDLINDLARWAA 217
LLW AEGFL+ + E++G ++ EL SRSL QQS+ D +FVMHDL+NDLA +
Sbjct: 446 LLWMAEGFLEHSQRNKTAEEVGHDYFIELLSRSLIQQSNDDGKEKFVMHDLVNDLALVVS 505
Query: 218 GEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHF- 276
G CFR+E G N S+++RHFSY G+YD K+ + + D + LR+FLP+ L ++
Sbjct: 506 GTSCFRLE---FGGN---MSKNVRHFSYNQGDYDFFKKFEVLYDFKCLRSFLPINLRNWV 559
Query: 277 DENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPC 336
YL+ V++ L+ L RLRV SL YRNI LP +G+L LR L+LS T + +P
Sbjct: 560 GGYYLSSKVVEDLIPKLKRLRVLSLKYYRNINILPESVGSLVELRYLDLSFTGIKS-LPN 618
Query: 337 GAGQEVDEVFPKLRTLSLDNCCKLQGTLP---RRLLLLETLDITSCD-----QLLVTIQC 388
L+TL+L C L LP +L+ L LDI+ + +V +
Sbjct: 619 ATCN-----LYNLQTLNLTQCENLT-ELPLHFGKLINLRHLDISKTNIKEMPMQIVGLNN 672
Query: 389 LPALSELQIDG-----CKRVVFSSPHLVHAV------NVREQAYFWRSETRLPQDIRSLN 437
L L++ + + V P+L + NV + + R + I L
Sbjct: 673 LQTLTDFSVGKQDTGLSVKEVGKFPNLRGKLCIKNLQNVSDAIEAYDVNMRKKEHIEELE 732
Query: 438 WLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLT--LSSLTEMR 495
LQ S+ + S + D QP R + L G T P L S++ +
Sbjct: 733 -LQWSKQTE-DSRTEKDVLDMLQPSFNLRKLIIRLY---GGTSFPSWLGDPLFSNMVSLC 787
Query: 496 IHDCASLVSFPQAALPSQLRSVVIE-----------------------------ECDALE 526
I +C V+ P L+ + IE E +
Sbjct: 788 ISNCEYCVTLPPLGQLPSLKDLTIEGMTMETIGLEFYGMTVEPSISLFRPFQSLESLQIS 847
Query: 527 SLP--EAWMQNSNSS-----LECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPE 579
S+P + W+ N L L + C L +LPS + I I GC L + P
Sbjct: 848 SMPNWKEWIHYENDEFNFPRLRTLCLSQCPKLKGHLPSSLPS-IDEINITGCDRLLTTPP 906
Query: 580 AWMH-----NEL------------------PATLEHLEVSYCSNLALLSR---------- 606
+H NE+ P L+ +SYC L L +
Sbjct: 907 TTLHWLSSLNEIGIQGSTGSSQWLLLEIDSPCVLQSATISYCDTLFSLPKIIRSSICLRF 966
Query: 607 -------------NGNLPQSLKYLKIEDCSKLESLA-ERLDN-TSLEEISI-SVLENLKS 650
LP SL+Y++I+DC L L E N TSL + + + L S
Sbjct: 967 LELYDLPSLAAFPTDGLPTSLQYIRIDDCPNLAFLPLETWGNYTSLVTLHLWNSCYALTS 1026
Query: 651 LPADLHNLHHLQKIWIFGCPNLESF----PEEGLPSTKLTELTIYDCENLKALPNCMHNL 706
P D LQ ++I C NLES LPST L +Y+C+ L++L + L
Sbjct: 1027 FPLD--GFPALQDLFICRCKNLESIFISKNSSHLPST-LQSFEVYECDELRSLTLPIDTL 1083
Query: 707 TSLLNLKISECPSV-VSFPEDG-FPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWG 764
SL L + + P + + F + P L+S+ + ++I+ P+ EWG TSL I G
Sbjct: 1084 ISLERLSLGDLPELTLPFCKGACLPPKLRSIFIRSVRIATPVAEWGLQHLTSLSSLYI-G 1142
Query: 765 GCPDLVSP----PPFPASLTNLWISDMPDLESISSIG-ENLTSLKTLRLSDCPKLKYFSE 819
G D+V+ P SL +L IS++ +++SI G +L+SL+TL L+DCP+L+ S+
Sbjct: 1143 GDDDIVNTLLKERLLPISLVSLSISNLCEIKSIDGNGLRHLSSLETLCLNDCPRLESLSK 1202
Query: 820 QGLPKSLLQLHIYACPLIE 838
P SL L I+ CPL+E
Sbjct: 1203 DTFPSSLKILRIWKCPLLE 1221
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059590|ref|XP_002299922.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847180|gb|EEE84727.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 333/972 (34%), Positives = 485/972 (49%), Gaps = 170/972 (17%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
+LK++L GKKFL+VLDDVW+ENY W+ L PF +GA GSK+++TTRN V+ G+
Sbjct: 262 QLKEKLSGKKFLIVLDDVWSENYEEWTALCSPFASGARGSKVIITTRNEGVSLLTGSIYA 321
Query: 61 YQLKELSDDDCL-----------DFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD 109
Y LKELSDDDCL +F + LKE+GE+IV +C GLPLAAKTLGGLLRG+
Sbjct: 322 YALKELSDDDCLLLFAKHALDASNFDDYPDLKEIGEEIVKRCRGLPLAAKTLGGLLRGKP 381
Query: 110 DPRDWEFVLKTDIWNL--RDSDILPALRL---------KQCFAYSSLFPKDYEFQDEEII 158
+ ++W+ VL + +W+L +S ILPALRL KQCFAY ++FPKDYEF E++
Sbjct: 382 NSKEWKAVLNSKMWDLPEENSGILPALRLSYHHLPSHLKQCFAYCAIFPKDYEFDKNELV 441
Query: 159 LLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAG 218
LW AEGFL Q ++M+D+G+E+ +L SRS FQQSS + R+VMHDLI++LA++ +G
Sbjct: 442 SLWMAEGFLQQPKEKKQMKDIGKEYFHDLLSRSFFQQSSANNVRYVMHDLISELAQFVSG 501
Query: 219 EICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDE 278
E+CF + D L +RH S+ YD +R + +++ LRTFLP+ +
Sbjct: 502 EVCFHLGDKLEDSPSHA---KVRHSSFTRHRYDISQRFEVFYEMKSLRTFLPLPIFSPPY 558
Query: 279 NYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGA 338
N+L VL L+ +L RL V SL GY + LP+ I LKHLR LNLS T+ E +P
Sbjct: 559 NHLTSKVLHDLVPNLKRLAVLSLAGY-CLVELPSSICALKHLRYLNLSYTEIEV-LP--- 613
Query: 339 GQEVDEVFPKLRTLSLDNCCKLQGTLP---RRLLLLETLDITSCDQL---------LVTI 386
+ + EVF +L+TL L C KL LP L+ L+ LDI+ D L L +
Sbjct: 614 -ESLCEVF-RLQTLGLRGCKKLI-KLPIGIDNLIDLQYLDISGTDSLQEMPPQIGNLTNL 670
Query: 387 QCLPALSELQIDGCKRVV--------FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNW 438
LP + G + ++ + L + V+V++ E R ++ SL W
Sbjct: 671 HTLPKFIMGKGLGIRELMKLSHLQGQLNITGLHNVVDVQDTELAILKEKRGLSEL-SLEW 729
Query: 439 LQ-----ISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL--LTLSSL 491
+ S +L L +E H Q +L + G T P L + +++
Sbjct: 730 IHNVNGFQSEARELQLLNLLEPHQTLQ-----KLSIMSY----GGTTFPSWLGDHSFTNM 780
Query: 492 TEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNS-----SLECLAIR 546
+++ C + S P LR + I+ D + ++ ++ +S SLE L I
Sbjct: 781 VCLQLRGCHKITSLPSLGQLPLLRDLSIKGMDKVTTVGAEFLGVGSSVKAFPSLEGLIIE 840
Query: 547 SC-------------------------NSLVSFPEVA--LPSQL---RTIIIGGCHALES 576
++++ P +A LPS L + + I C L +
Sbjct: 841 DMLNWKQWSWSNGFNQEEVGEFPYLRELTIINCPMLAGKLPSHLPSVKKLSICNCPQLVA 900
Query: 577 LPE----------------AWMHNELPATLEHLEVSYCSNLALLSRNGNLPQ--SLKYLK 618
LPE H LP +L L+V + L R+G L +L+ L+
Sbjct: 901 LPEILPCLCELIVEGCNEAILNHKSLP-SLTTLKVGSITGFFCL-RSGFLQAMVALQDLE 958
Query: 619 IEDCSKLESLAERLDNTSLEEIS-------------ISVLE-----NLKSLPADLHNLHH 660
IE+C+ L L LD T L E++ +S++E +L+ LP+ L L
Sbjct: 959 IENCNDLMYLW--LDGTDLHELASMKHLEIKKFEQLVSLVELEKFGDLEQLPSGLQFLGS 1016
Query: 661 LQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTS--------LLNL 712
L+ + + CP L SFP GLP T L L I C++LK+LP+ M + L L
Sbjct: 1017 LRNLKVDHCPKLVSFP-GGLPYT-LQRLEISRCDSLKSLPDGMVITMNGRKSSQCLLEEL 1074
Query: 713 KISECPSVVSFPEDGFPTNLQSLDV---HDLK-ISKPLLEWGSNR--FTSLRRFTIWGGC 766
IS CPS+ S P P L+SL + +LK + ++ G +R + L TI G
Sbjct: 1075 LISWCPSLKSIPRGMLPITLKSLAISWCKNLKNLHGGIVYDGGDRTELSRLEHLTI-EGL 1133
Query: 767 PDLVSPP-PFPASLTNLWIS--DMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL- 822
P L P FP SL L I LES+ +L+ L L +S C L+ F E GL
Sbjct: 1134 PLLPFPAFEFPGSLKTLEIGYCTTQSLESLC----DLSHLTELEISGCSMLESFPEMGLI 1189
Query: 823 PKSLLQLHIYAC 834
+L+ L I+ C
Sbjct: 1190 TPNLISLSIWKC 1201
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458569|ref|XP_003599565.1| NBS-LRR type disease resistance protein [Medicago truncatula] gi|355488613|gb|AES69816.1| NBS-LRR type disease resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 323/978 (33%), Positives = 471/978 (48%), Gaps = 162/978 (16%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPV 60
EL K L K+FLLVLDD+WN++Y+ W EL P G GS++++TTR VAE P+
Sbjct: 266 ELNKNLRDKRFLLVLDDLWNDSYNDWDELVTPLINGKTGSRVIITTRQQKVAEVAHTFPI 325
Query: 61 YQLKELSDDDCLDF-TRHQ------------SLKEVGEQIVIKCGGLPLAAKTLGGLLRG 107
+++ LSDDDC ++H +L+E+G +I KCGGLP+AAKTLGG+LR
Sbjct: 326 HKVDPLSDDDCWSLLSKHAFGSEVRGGSKCPNLEEIGRKIAKKCGGLPIAAKTLGGILRS 385
Query: 108 RDDPRDWEFVLKTDIWNLRDSDILPALR---------LKQCFAYSSLFPKDYEFQDEEII 158
+ D ++W +L +DIWNL + ILPALR LK+CFAY S+FPKD+ +E+I
Sbjct: 386 KVDAKEWSTILNSDIWNLPNDHILPALRLSYQYLPSHLKRCFAYCSIFPKDFPLDKKELI 445
Query: 159 LLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDAS-RFVMHDLINDLARWAA 217
LLW AEGFL++ + E++G ++ EL SRSL QQS+ D +FVMHDL+NDLA +
Sbjct: 446 LLWMAEGFLERSQRNKTAEEVGHDYFIELLSRSLIQQSNDDGKEKFVMHDLVNDLALVVS 505
Query: 218 GEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHF- 276
G CFR+E G N S+++RHFSY G+YD K+ + + D + LR+FLP+ L ++
Sbjct: 506 GTSCFRLE---FGGN---MSKNVRHFSYNQGDYDFFKKFEVLYDFKCLRSFLPINLRNWV 559
Query: 277 DENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPC 336
YL+ V++ L+ L RLRV SL YRNI LP +G+L LR L+LS T + +P
Sbjct: 560 GGYYLSSKVVEDLIPKLKRLRVLSLKYYRNINILPESVGSLVELRYLDLSFTGIKS-LPN 618
Query: 337 GAGQEVDEVFPKLRTLSLDNCCKLQGTLP---RRLLLLETLDITSCD-----QLLVTIQC 388
L+TL+L C L LP +L+ L LDI+ + +V +
Sbjct: 619 ATCN-----LYNLQTLNLTQCENLT-ELPLHFGKLINLRHLDISKTNIKEMPMQIVGLNN 672
Query: 389 LPALSELQIDG-----CKRVVFSSPHLVHAV------NVREQAYFWRSETRLPQDIRSLN 437
L L++ + + V P+L + NV + + R + I L
Sbjct: 673 LQTLTDFSVGKQDTGLSVKEVGKFPNLRGKLCIKNLQNVSDAIEAYDVNMRKKEHIEELE 732
Query: 438 WLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLT--LSSLTEMR 495
LQ S+ + S + D QP R + L G T P L S++ +
Sbjct: 733 -LQWSKQTE-DSRTEKDVLDILQPSFNLRKLIIRLY---GGTSFPSWLGDPLFSNMVSLC 787
Query: 496 IHDCASLVSFPQAALPSQLRSVVIE---------ECDALESLPEAWMQNSNSSLECLAIR 546
I +C V+ P L+ + IE E + P + SLE L I
Sbjct: 788 ISNCEYCVTLPPLGQLPSLKDLTIEGMTMETIGLEFYGMTVEPSISLFRPFQSLESLQIS 847
Query: 547 SC----------NSLVSFPEVA-------------LPSQLRTII---IGGCHALESLPEA 580
S N +FP + LPS L +I I GC L + P
Sbjct: 848 SMPNWKEWIHYENDEFNFPRLRTLCLSQCPKLKGHLPSSLPSIDEINITGCDRLLTTPPT 907
Query: 581 WMH-----NEL------------------PATLEHLEVSYCSNLALLSR----------- 606
+H N++ P L+ + YC L L +
Sbjct: 908 TLHWLSSLNKIGINWSTGSSQWLLLEIDSPCVLQGATIYYCDTLFSLPKIIRSSICLRFL 967
Query: 607 ------------NGNLPQSLKYLKIEDCSKLESLA-ERLDN-TSLEEISI-SVLENLKSL 651
LP SL+ L+I+DC L L E N TSL + + + L S
Sbjct: 968 ILYDVPSLAAFPTDGLPTSLQSLRIDDCPNLAFLPLETWGNYTSLVTLHLWNSCYALTSF 1027
Query: 652 PADLHNLHHLQKIWIFGCPNLESF----PEEGLPSTKLTELTIYDCENLKALPNCMHNLT 707
P D LQ + I+GC NLES LPST L +Y+C+ L++L + L
Sbjct: 1028 PLD--GFPALQDLSIYGCKNLESIFITKNSSHLPST-LQSFAVYECDELRSLTLPIDTLI 1084
Query: 708 SLLNLKISECPSV-VSFPEDG-FPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGG 765
SL L + + P + + F + P L+S+D++ ++I+ P+ EWG TSL I GG
Sbjct: 1085 SLERLLLGDLPELTLPFCKGACLPPKLRSIDINTVRIATPVAEWGLQHLTSLSSLYI-GG 1143
Query: 766 CPDLVSP----PPFPASLTNLWISDMPDLESISSIG-ENLTSLKTLRLSDCPKLKYFSEQ 820
D+V+ P SL +L+IS++ +++S G +L+SLKTL +CP+L+ S+
Sbjct: 1144 DDDIVNTLLKERLLPISLVSLYISNLCEIKSFDGNGLRHLSSLKTLSFYNCPRLESLSKD 1203
Query: 821 GLPKSLLQLHIYACPLIE 838
P SL L I CPL+E
Sbjct: 1204 TFPSSLKILRIRKCPLLE 1221
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736335|emb|CBI24973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 319/966 (33%), Positives = 463/966 (47%), Gaps = 172/966 (17%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGA-DP 59
+L+ L +KFL++LDDVWNEN+ W L P GA GSK++VTTRN VA MGA +
Sbjct: 319 KLRDALTERKFLIILDDVWNENFGNWDRLRAPLSVGAKGSKLIVTTRNKNVALMMGAAEN 378
Query: 60 VYQLKELSDDDCLD-FTRHQ----------SLKEVGEQIVIKCGGLPLAAKTLGGLLRGR 108
+++L LS+D C F +H +L +G +IV KCGGLPLAAK+LGGLLR +
Sbjct: 379 LHELNPLSEDACWSVFEKHAFEHRNMEDNPNLVSIGRKIVGKCGGLPLAAKSLGGLLRSK 438
Query: 109 DDPRDWEFVLKTDIWNLRDSD--ILPALRL---------KQCFAYSSLFPKDYEFQDEEI 157
+WE V + IW+L ++ ILPALRL K+CFAY ++FPKD+EF + +
Sbjct: 439 QREEEWERVSNSKIWDLSSTECEILPALRLSYHYVPSYLKRCFAYCAMFPKDFEFNSKTL 498
Query: 158 ILLWTAEGFLDQEYNGRK--MEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARW 215
+LLW AEG + QE N MEDLG ++ EL SRS FQ S D RFVMHDLI DLAR
Sbjct: 499 VLLWMAEGLI-QEPNADNLTMEDLGDDYFCELLSRSFFQSSGTDEFRFVMHDLICDLARV 557
Query: 216 AAGEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMEL-S 274
A+GEICF +EDTL + S+ RH S+I G++D K+ ++ +EHLRTF+ + +
Sbjct: 558 ASGEICFCLEDTLDSNRQSTISKETRHSSFIRGKFDAFKKFEAFQGLEHLRTFVALPIQG 617
Query: 275 HFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWI 334
F E+++ V L+ +LRV SL Y IF LP+ IG LKHLR LNLS T+ + +
Sbjct: 618 TFTESFVTSLVCDHLVPKFRQLRVLSLSEYM-IFELPDSIGGLKHLRYLNLSFTQI-KLL 675
Query: 335 PCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLETLDITSCD-----QLLVTI 386
P V ++ L+TL L NC L LP L+ L L++ C Q + +
Sbjct: 676 P----DSVTNLY-NLQTLILSNCKHLT-RLPSNIGNLISLRHLNVVGCSLQDMPQQIGKL 729
Query: 387 QCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLP-QDIRSLNW---LQIS 442
+ L LS+ + KR L ++R + + E + QD R N L +
Sbjct: 730 KKLQTLSDFIVS--KRGFLGIKELKDLSHLRGEICISKLENVVDVQDARDANLKAKLNVE 787
Query: 443 RCPQLISLVTVEEHDQQ---------QPELPCRLQFLELSCCEGLTRLPQALLTLS--SL 491
R + S HD+ QP + +E G + P + S L
Sbjct: 788 RLSMIWSKELDGSHDEDAEMEVLLSLQPHTSLKKLNIE---GYGGRQFPNWICDPSYIKL 844
Query: 492 TEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPE--------------------- 530
E+ + C +S P L+ +VI+ D ++S+
Sbjct: 845 VELSLIGCIRCISVPSVGQLPFLKKLVIKRMDGVKSVGLEFEGQVSLHAKPFQCLESLWF 904
Query: 531 ---------AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTII---IGGC-----HA 573
W + S S L L I++C L+ LP+ L +++ IG C
Sbjct: 905 EDMMEWEEWCWSKESFSCLHQLEIKNCPRLIK----KLPTHLTSLVKLNIGNCPEIMPEF 960
Query: 574 LESLPE--------------AWMHN----------------------------ELPATLE 591
++SLP W+ LP L+
Sbjct: 961 MQSLPRLELLEIDNSGQLQCLWLDGLGLGNLSRLRILSSDQLVSLGGEEEEVQGLPYNLQ 1020
Query: 592 HLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL 651
HLE+ C L L SL L IEDC KL S E+ L ++IS E+L SL
Sbjct: 1021 HLEIRKCDKLEKLPHGLQSYTSLAELIIEDCPKLVSFPEKGFPLMLRGLAISNCESLSSL 1080
Query: 652 PADL------HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP----- 700
P + +N+ HL+ + I CP+L FP+ LP+T L L I DCE L +LP
Sbjct: 1081 PDGMMMRNSSNNMCHLEYLEIEECPSLICFPKGQLPTT-LRRLFISDCEKLVSLPEDIDS 1139
Query: 701 ---NCMHNLTS------LLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLE--W 749
MH+ ++ L L IS+C S+ SFP FP+ L+S+ + + +P+ E +
Sbjct: 1140 LPEGIMHHHSNNTTNGGLQILDISQCSSLTSFPTGKFPSTLKSITIDNCAQMQPISEEMF 1199
Query: 750 GSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLS 809
N +L + +I G P+L + P +L +L I +L+ + NLTSL +L+++
Sbjct: 1200 HCNN-NALEKLSI-SGHPNLKTIPDCLYNLKDLRIEKCENLDLQPHLLRNLTSLSSLQIT 1257
Query: 810 DCPKLK 815
+C +K
Sbjct: 1258 NCETIK 1263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 839 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.319 | 0.188 | 0.388 | 4.5e-74 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.295 | 0.235 | 0.416 | 5.7e-51 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.407 | 0.288 | 0.293 | 2.1e-28 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.205 | 0.095 | 0.333 | 8.1e-28 | |
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.452 | 0.293 | 0.270 | 3.6e-26 | |
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.418 | 0.177 | 0.274 | 6.2e-26 | |
| TAIR|locus:2098110 | 1219 | AT3G44670 [Arabidopsis thalian | 0.660 | 0.454 | 0.260 | 1.6e-23 | |
| TAIR|locus:2098145 | 1240 | AT3G44630 [Arabidopsis thalian | 0.386 | 0.261 | 0.254 | 3e-22 | |
| TAIR|locus:2166320 | 888 | AT5G63020 [Arabidopsis thalian | 0.634 | 0.599 | 0.237 | 6.6e-22 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.240 | 0.192 | 0.279 | 2.6e-21 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
Identities = 113/291 (38%), Positives = 164/291 (56%)
Query: 77 HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRDSDILPALRL 136
+Q L+ +G++I +C GLPLAA+ + LR + +P DW V K ++ + ILP L+L
Sbjct: 352 NQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKN--FSSYTNSILPVLKL 409
Query: 137 ---------KQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVREL 187
K+CFA S+FPK + F EE++LLW A L Q + R++ED+G +++ +L
Sbjct: 410 SYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDL 469
Query: 188 HSRSLFQQSSYDASRFVMHDLINDLARWAAGEICFRMEDTLAGENRQKFSESLRHFSYIC 247
++S FQ+ + FVMHDL+NDLA+ +G+ CFR+ED +N + + RHFS+
Sbjct: 470 VAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLED----DNIPEIPSTTRHFSFSR 525
Query: 248 GEYDGEKRLKSICDVEHLRTFLPMEL-SHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRN 306
+ D +SIC E LRT LP + + L VL LLN L LR+ SL Y+
Sbjct: 526 SQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQ- 584
Query: 307 IFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNC 357
I NLP + LK LR L+LS TK +E +P E L+TL L NC
Sbjct: 585 ITNLPKSLKGLKLLRYLDLSSTKIKE-LP-----EFVCTLCNLQTLLLSNC 629
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 5.7e-51, Sum P(2) = 5.7e-51
Identities = 112/269 (41%), Positives = 167/269 (62%)
Query: 77 HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNL-RD-SDILPAL 134
++ + ++ E+IV KC GLPLA KTLGG+LR +WE VL + IW+L D S++LP L
Sbjct: 356 NREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVL 415
Query: 135 R---------LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVR 185
R LK+CFAY S+FPK + F+ ++++LLW AEGFL Q + + +E+LG E+
Sbjct: 416 RVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFS 475
Query: 186 ELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICFRMEDTLAGENRQKFSESLRHFSY 245
EL SRSL Q++ +R++MHD IN+LA++A+GE + ED + + SE R+ SY
Sbjct: 476 ELESRSLLQKTK---TRYIMHDFINELAQFASGEFSSKFEDGC----KLQVSERTRYLSY 528
Query: 246 ICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENY-LAWSVLQMLLNHLPRLRVFSLCGY 304
+ Y +++ +V+ LRTFLP+ L++ + L V + LL L RLRV SL Y
Sbjct: 529 LRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHY 588
Query: 305 RNIFNLPNEI-GNLKHLRCLNLSRTKWEE 332
+ I LP + N+ H R L+LSRT+ E+
Sbjct: 589 K-IARLPPDFFKNISHARFLDLSRTELEK 616
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 107/365 (29%), Positives = 176/365 (48%)
Query: 462 ELPCRLQFLEL-----SCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRS 516
E C LQFL C + LPQ L +S + +H +P LP +
Sbjct: 579 ERMCNLQFLRFHHPYGDRCHDILYLPQGLSHISRKLRL-LH----WERYPLTCLPPKFNP 633
Query: 517 VVIEECDALESLPEA-WMQNSN-SSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHAL 574
+ + + +S+ E W N +L+ + + C +L P+ + + L+ + + C +L
Sbjct: 634 EFLVKINMRDSMLEKLWDGNEPIRNLKWMDLSFCVNLKELPDFSTATNLQELRLINCLSL 693
Query: 575 ESLPEAWMHNELPATLEHLEVSYCSNLALL-SRNGNLPQSLKYLKIEDCSKLESLAERLD 633
LP + + N L L++ CS+L L S GNL +LK L + CS L L
Sbjct: 694 VELPSS-IGNA--TNLLELDLIDCSSLVKLPSSIGNLT-NLKKLFLNRCSSLVKLPSSFG 749
Query: 634 N-TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692
N TSL+E+++S +L +P+ + N+ +L+K++ GC +L P +T L EL + +
Sbjct: 750 NVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLN 809
Query: 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSN 752
C +L P+ M NLT L +L +S C S+V P G NLQSL + D S L +
Sbjct: 810 CSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCS-SLMELPFTIE 868
Query: 753 RFTSLRRFTIWGGCPDLVSPPPFPASLTNL---WISDMPDLESISSIGENLTSLKTLRLS 809
T+L + GC +L+ P ++TNL +++ L+ + S+ EN +L++L L
Sbjct: 869 NATNLDTLYL-DGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLM 927
Query: 810 DCPKL 814
C L
Sbjct: 928 KCSSL 932
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 8.1e-28, Sum P(2) = 8.1e-28
Identities = 66/198 (33%), Positives = 111/198 (56%)
Query: 76 RHQS---LKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRD-WEFVLKTDIW-NLRDS-D 129
+H S L+ +G+QI + G PLAAKT+G LL G + D W+ ++K++ W +L+ +
Sbjct: 483 KHDSSPGLQVLGKQIASELKGNPLAAKTVGSLL-GTNLTIDHWDSIIKSEEWKSLQQAYG 541
Query: 130 ILPALRL---------KQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLG 180
I+ AL+L +QC +Y SLFPK Y F ++I +W A+GF+++ + K+E G
Sbjct: 542 IMQALKLSYDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQIWIAQGFVEE--SSEKLEQKG 599
Query: 181 REFVRELHSRSLFQQ---SSYDASRFVMHDLINDLARWAAGEICFRMEDTLAGENRQKFS 237
+++ EL + QQ + + + FVMHDL++DLA+ ++ T+ G + +
Sbjct: 600 WKYLAELVNSGFLQQVESTRFSSEYFVMHDLMHDLAQ----KVSQTEYATIDGSECTELA 655
Query: 238 ESLRHFSYICGE-YDGEK 254
S+RH S + Y EK
Sbjct: 656 PSIRHLSIVTDSAYRKEK 673
|
|
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 118/436 (27%), Positives = 201/436 (46%)
Query: 431 QDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSS 490
Q +R+L + +SRC L+ + + + L+ L LS C+ L + ++ L
Sbjct: 622 QPLRNLKKMDLSRCKYLVEVPDLSK--------ATNLEELNLSYCQSLVEVTPSIKNLKG 673
Query: 491 LTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPE-AW--------------MQN 535
L+ + +C L P + L +V + C +L+ PE +W + +
Sbjct: 674 LSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISWNTRRLYLSSTKIEELPS 733
Query: 536 SNSSLECLA---IRSCNSLVSFPEVA--LPSQLRTIIIGGCHALESLPEAWMHNELPATL 590
S S L CL + C L + P L S L+++ + GC LE+LP+ + N +L
Sbjct: 734 SISRLSCLVKLDMSDCQRLRTLPSYLGHLVS-LKSLNLDGCRRLENLPDT-LQNL--TSL 789
Query: 591 EHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTS-LEEISISVLENLK 649
E LEVS C N+ R + S++ L+I + S +E + R+ N S L + IS + L
Sbjct: 790 ETLEVSGCLNVNEFPR---VSTSIEVLRISETS-IEEIPARICNLSQLRSLDISENKRLA 845
Query: 650 SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSL 709
SLP + L L+K+ + GC LESFP E + D ++K LP + NL +L
Sbjct: 846 SLPVSISELRSLEKLKLSGCSVLESFPLEICQTMSCLRWFDLDRTSIKELPENIGNLVAL 905
Query: 710 LNLKISECPSVVSFPEDGFP--TNLQSLDV-HDLKISKPLLEW---GSNRFTSLRRFTIW 763
L+ S +V+ T LQ L + + + LL +RF LR ++
Sbjct: 906 EVLQASR--TVIRRAPWSIARLTRLQVLAIGNSFFTPEGLLHSLCPPLSRFDDLRALSLS 963
Query: 764 GGCPDLVSPPPFPASLTNLW-ISDMP----DLESISSIGENLTSLKTLRLSDCPKLKYFS 818
++ P S+ NLW + ++ + E I + + LT L L L++C +L+
Sbjct: 964 N-----MNMTEIPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNNCQRLQALP 1018
Query: 819 EQGLPKSLLQLHIYAC 834
++ LP+ LL ++I++C
Sbjct: 1019 DE-LPRGLLYIYIHSC 1033
|
|
| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 6.2e-26, Sum P(2) = 6.2e-26
Identities = 104/379 (27%), Positives = 188/379 (49%)
Query: 467 LQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALE 526
LQ L+L C L +LP +++ ++L + ++ C+SLV P + L+++ + C +L
Sbjct: 761 LQNLDLGCLR-LLKLPLSIVKFTNLKKFILNGCSSLVELPFMGNATNLQNLDLGNCSSLV 819
Query: 527 SLPEAWMQNSNSSLECLAIRSCNSLVSFPE-VALPSQLRTIIIGGCHALESLPEAWMHNE 585
LP + + N+ +L+ L + +C+SLV P + + L + + C +L +P + H
Sbjct: 820 ELPSS-IGNA-INLQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPTSIGH-- 875
Query: 586 LPATLEHLEVSYCSNLALL-SRNGNLPQSLKYLKIEDCSKLESLAERLDN-TSLEEISIS 643
L L++S CS+L L S GN+ + L+ L + +CS L L + T+L + +S
Sbjct: 876 -VTNLWRLDLSGCSSLVELPSSVGNISE-LQVLNLHNCSNLVKLPSSFGHATNLWRLDLS 933
Query: 644 VLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCM 703
+L LP+ + N+ +LQ++ + C NL P L L++ C+ L+ALP+ +
Sbjct: 934 GCSSLVELPSSIGNITNLQELNLCNCSNLVKLPSSIGNLHLLFTLSLARCQKLEALPSNI 993
Query: 704 HNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK-P--LLEWGSNRFTSLRRF 760
NL SL L +++C SFPE TN++ L + + + P + W +R T L
Sbjct: 994 -NLKSLERLDLTDCSQFKSFPE--ISTNIECLYLDGTAVEEVPSSIKSW--SRLTVLH-M 1047
Query: 761 TIWGGCPDLVSPPPFPASLTNL-WISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819
+ + + F L + W+ D++ ++ + ++ L LRL C KL S
Sbjct: 1048 SYFEKLKE------FSHVLDIITWLEFGEDIQEVAPWIKEISRLHGLRLYKCRKL--LSL 1099
Query: 820 QGLPKSLLQLHIYACPLIE 838
LP+SL ++ C +E
Sbjct: 1100 PQLPESLSIINAEGCESLE 1118
|
|
| TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 166/638 (26%), Positives = 273/638 (42%)
Query: 39 GSKIVVTTRNLVVAERMGADPVYQLKELSDDD-----CLD-FTR---HQSLKEVGEQIVI 89
GS+I++TT +L V + G + VY++K S+D+ C++ F + H+ E+ +++
Sbjct: 401 GSRIIITTEDLGVLKAHGINHVYKVKYPSNDEAFQIFCMNAFGQKQPHEGFDEIAWEVMA 460
Query: 90 KCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRDSDILPALRLKQCFAYSSLFPKD 149
G LPL K LG LRG+ P +WE L +L D +I ++ F+Y L +D
Sbjct: 461 LAGELPLGLKVLGSALRGKSKP-EWERTLPRLKTSL-DGNIGSIIQ----FSYDGLCDED 514
Query: 150 YEFQDEEIILLWTAEGFLD-QEYNGRKMEDLGREFVRELHSRSLFQ--QSSYDASRFVMH 206
++ I L+ E +E K D+ ++ + L +SL ++S MH
Sbjct: 515 -KYLLLYIACLFNYESTTKVEEVLANKFLDV-KQGLHVLAQKSLISIDENSLYGDTINMH 572
Query: 207 DLINDLARWAAGEIC----FRMEDTLAGENR--QKFSESL---RHFSYICGEYDGEKRLK 257
L+ R + + F L GE + S+ R F I + G +
Sbjct: 573 TLLRQFGRETSRKQFVYHGFTKRQLLVGERDICEVLSDDTIDSRRFIGITFDLFGTQDYL 632
Query: 258 SICD--VEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIG 315
+I + +E + F + ++ LQ L+ H P++R Y+NI LP+
Sbjct: 633 NISEKALERMNDFEFVRINALIPTERLQLALQDLICHSPKIRSLKWYSYQNIC-LPSTF- 690
Query: 316 NLKHLRCLNLSRTKWEE-WIPCGAGQEVDEVFPKLRTLSLDNC--CKXX--XXXXXXXXX 370
N + L L++S +K + W E + L+ + L N K
Sbjct: 691 NPEFLVELHMSFSKLRKLW-------EGTKQLRNLKWMDLSNSEDLKELPNLSTATNLEE 743
Query: 371 XXXXDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSET--R 428
D +S +L +I+ L +L L + C +V P +A + E+ Y + +
Sbjct: 744 LKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLV-ELPSFGNATKL-EELYLENCSSLEK 801
Query: 429 LPQDIRSLNWLQIS--RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALL 486
LP I + N Q+S C +++ L +E LQ L+L C L LP ++
Sbjct: 802 LPPSINANNLQQLSLINCSRVVELPAIEN--------ATNLQKLDLGNCSSLIELPLSIG 853
Query: 487 TLSSLTEMRIHDCASLVSFPQAALP-SQLRSVVIEECDALESLPEAWMQNSNSS-LECLA 544
T ++L E+ I C+SLV P + + L+ + C L LP N N L+ L
Sbjct: 854 TATNLKELNISGCSSLVKLPSSIGDITNLKEFDLSNCSNLVELPI----NINLKFLDTLN 909
Query: 545 IRSCNSLVSFPEVALP---------SQLRTIIIGGCHALESLPEAWMHNELPATLEHLEV 595
+ C+ L SFPE++ S+LR + I C+ L SLP+ LP +L +L
Sbjct: 910 LAGCSQLKSFPEISTKIFTDCYQRMSRLRDLRINNCNNLVSLPQ------LPDSLAYLYA 963
Query: 596 SYCSNLALLSRNGNLPQ-SLKYLKIEDCSKLESLAERL 632
C +L L N P+ SL + K C KL A L
Sbjct: 964 DNCKSLERLDCCFNNPEISLNFPK---CFKLNQEARDL 998
|
|
| TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 92/362 (25%), Positives = 169/362 (46%)
Query: 401 KRVVFSSPHLV-HAVNVREQAYFWRSETRLPQDIRSLNWLQIS-RCPQLISLVTVEEHDQ 458
+RV + L+ H+ +R +F LP +++ RC +L L E +
Sbjct: 680 ERVQLALEDLIYHSPRIRSLKWFPYQNICLPSTFNPEFLVELDMRCSKLRKLW---EGTK 736
Query: 459 QQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVV 518
Q L ++++LS L LP ++ L+SL + + DC+SLV P + + L+ +
Sbjct: 737 QLRNL----KWMDLSDSRDLKELPSSIEKLTSLQILDLRDCSSLVKLPPSINANNLQGLS 792
Query: 519 IEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESL 577
+ C + LP ++N ++L L +++C+SL+ P + + L + I GC +L L
Sbjct: 793 LTNCSRVVKLPA--IENV-TNLHQLKLQNCSSLIELPLSIGTANNLWKLDIRGCSSLVKL 849
Query: 578 PEAWMHNELPATLEHLEVSYCSNLALL-SRNGNLPQSLKYLKIEDCSKLESLAERLDNTS 636
P + ++ L+ ++S CSNL L S GNL Q L L++ CSKLE+L ++ S
Sbjct: 850 PSSI--GDM-TNLKEFDLSNCSNLVELPSSIGNL-QKLFMLRMRGCSKLETLPTNINLIS 905
Query: 637 LEEISISVLENLKSLPADLHNLHHLQ-------------KIW----IFGCPNLESFPEEG 679
L + ++ LKS P ++ L+ W ++ ES E
Sbjct: 906 LRILDLTDCSQLKSFPEISTHISELRLKGTAIKEVPLSITSWSRLAVYEMSYFESLKEFP 965
Query: 680 LPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHD 739
+T+L + E+++ +P + ++ L L+++ C S+VS P+ P +L + +
Sbjct: 966 HALDIITDLLLVS-EDIQEVPPWVKRMSRLRALRLNNCNSLVSLPQ--LPDSLDYIYADN 1022
Query: 740 LK 741
K
Sbjct: 1023 CK 1024
|
|
| TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 6.6e-22, P = 6.6e-22
Identities = 143/603 (23%), Positives = 250/603 (41%)
Query: 16 DDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQLKELSDDDCLD-F 74
DD+W++ +E+ PF + G KIV TTR + RMG D +++ L+ DD D F
Sbjct: 263 DDIWSK--VDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAPDDAWDLF 320
Query: 75 TR---------HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEF---VLKTDI 122
T+ H + V + KC GLPLA +G + + ++W VL +
Sbjct: 321 TKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSA 380
Query: 123 --WNLRDSDILPALR----------LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQE 170
++ + +ILP L+ LK CF Y +LFP+D+ + +++ W EGF+D+
Sbjct: 381 AEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDR- 439
Query: 171 YNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICFRMEDTL-- 228
N K E+ G E + L L + + + + MHD++ ++A W A + + E+ +
Sbjct: 440 -NKGKAENQGYEIIGILVRSCLLMEENQETVK--MHDVVREMALWIASDFGKQKENFIVQ 496
Query: 229 AGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQM 288
AG + E + + ++SI D + + L +N+L +
Sbjct: 497 AGLQSRNIPE-IEKWKVARRVSLMFNNIESIRDAPESPQLITLLLR---KNFLG-HISSS 551
Query: 289 LLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPK 348
+P L V L R++ +LPNEI L+ L+LSRT+ W P G + K
Sbjct: 552 FFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIW-PAGLVE-----LRK 605
Query: 349 LRTLSLDNCCKXXXXXXXXXXXXXXXDITSCDQLLVTIQCLP----ALSELQI-DGCKRV 403
L L+L+ +TS L + + P L+ELQ+ + + +
Sbjct: 606 LLYLNLE-------YTRMVESICGISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTL 658
Query: 404 VFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPEL 463
+ + ++ EQ + S RL R+L ++ +IS V + Q+
Sbjct: 659 TIT----LGLASILEQ---FLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFA 711
Query: 464 PCRLQFLELSCCEGLTRL--PQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSV-VIE 520
+ +++ E + L P +L+++ + C L L + VI
Sbjct: 712 DSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVIS 771
Query: 521 ECDALESLPEAWMQNSN----SSLECLAIRSCNSLVSFPEVALPSQ-LRTIIIGGCHALE 575
D E + + + N L+ L + + L LP L+ I++ GC L
Sbjct: 772 ASDLKEVINKEKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELR 831
Query: 576 SLP 578
LP
Sbjct: 832 KLP 834
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 148 (57.2 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 61/218 (27%), Positives = 94/218 (43%)
Query: 131 LPALRLKQCFAYSSLFPKDYEFQDEEIILLWTAEG-FLDQEYNGRKMEDLGREFVRELHS 189
LP+ LK CF Y + FP DYE + + W AEG F + Y+G + D+G ++ EL
Sbjct: 420 LPSY-LKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVR 478
Query: 190 RSL-FQQSSYDASRFV---MHDLINDLARWAAGEICFRM---EDTLAGENRQKFSESLRH 242
R++ + SRF +HD++ ++ A E F T G + +
Sbjct: 479 RNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLV 538
Query: 243 FSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLC 302
+ Y D EK I D + LR+ + + ++ +W +L L LRV +
Sbjct: 539 YQYPI-TLDVEK---DINDPK-LRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIH 593
Query: 303 GYR-NIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAG 339
+ L + IG L HLR LNL + IP G
Sbjct: 594 RAKLKGGKLASSIGQLIHLRYLNLKHAEVTH-IPYSLG 630
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 839 | |||
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 2e-40 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 4e-15 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-11 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-07 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 1e-05 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-40
Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 26/194 (13%)
Query: 1 ELKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGA-DP 59
++K+ L K+FLLVLDDVW +N W ++ PF G GS+++VTTR+ VA RMG
Sbjct: 92 KIKEALLRKRFLLVLDDVWEKN--DWDKIGVPFPDGENGSRVIVTTRSESVAGRMGGTSK 149
Query: 60 VYQLKELSDDDCLDF----------TRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD 109
++++ L ++ + L+EV ++IV KC GLPLA K LGGLL +
Sbjct: 150 PHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKS 209
Query: 110 DPRDWEFVLKTDIWNLRDSD----ILPALR---------LKQCFAYSSLFPKDYEFQDEE 156
++WE VL+ L D +L L LK+CF Y +LFP+DY + E+
Sbjct: 210 TVQEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQ 269
Query: 157 IILLWTAEGFLDQE 170
+I LW AEGF+
Sbjct: 270 LIKLWIAEGFVIPS 283
|
Length = 285 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-15
Identities = 80/338 (23%), Positives = 143/338 (42%), Gaps = 76/338 (22%)
Query: 467 LQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQA-ALPSQLRSVVIEECDAL 525
L+ ++L + L +P L ++L +++ DC+SLV P + ++L + + C+ L
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694
Query: 526 ESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNE 585
E LP + SL L + C+ L SFP++ + + + + A+E P
Sbjct: 695 EILPTGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDET-AIEEFP------- 741
Query: 586 LPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD---------NTS 636
SNL L ++L L + + K E L ER+ + S
Sbjct: 742 -------------SNLRL--------ENLDELILCE-MKSEKLWERVQPLTPLMTMLSPS 779
Query: 637 LEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENL 696
L + +S + +L LP+ + NLH L+ L I +C NL
Sbjct: 780 LTRLFLSDIPSLVELPSSIQNLHKLE------------------------HLEIENCINL 815
Query: 697 KALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTS 756
+ LP + NL SL +L +S C + +FP+ TN+ L++ I + + W +F++
Sbjct: 816 ETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEE--VPWWIEKFSN 870
Query: 757 LRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS 794
L + GC +L + L +L D D +++
Sbjct: 871 LSFLDM-NGCNNLQRVSLNISKLKHLETVDFSDCGALT 907
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 26/238 (10%)
Query: 611 PQSLKYLKIEDCSKLESLAERLDN-TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGC 669
P++L L+++ SKLE L + + + T L I + +NLK +P DL +L+ + + C
Sbjct: 610 PENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDC 667
Query: 670 PNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFP 729
+L P KL +L + CENL+ LP + NL SL L +S C + SFP+
Sbjct: 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--IS 724
Query: 730 TNLQSLDVHDLKISKPLLEWGSN---------RFTSLRRFTIWGG----CPDLVSPPPFP 776
TN+ LD+ + I E+ SN ++ +W P + P
Sbjct: 725 TNISWLDLDETAIE----EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP-- 778
Query: 777 ASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYAC 834
SLT L++SD+P L + S +NL L+ L + +C L+ +SL L + C
Sbjct: 779 -SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 171/750 (22%), Positives = 295/750 (39%), Gaps = 172/750 (22%)
Query: 2 LKKQLFGKKFLLVLDDVWNENY-------SRWSELSCPFGAGAAGSKIVVTTRNLVVAER 54
++++L +K L+ +DD+ +++ ++W FG+G S+I+V T++
Sbjct: 289 MEERLKHRKVLIFIDDLDDQDVLDALAGQTQW------FGSG---SRIIVITKDKHFLRA 339
Query: 55 MGADPVYQLKELSDDDCLD-FTRH--------QSLKEVGEQIVIKCGGLPLAAKTLGGLL 105
G D +Y++ S++ L+ F R E+ ++ ++ G LPL LG L
Sbjct: 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYL 399
Query: 106 RGRDDPRDWEFVLKTDIWNLRDSDILPALRLKQCFAYSSLFPKDYE---------FQDEE 156
RGRD DW +L + N D I LR+ +Y L K + F E+
Sbjct: 400 RGRDK-EDWMDMLPR-LRNGLDGKIEKTLRV----SYDGLNNKKDKAIFRHIACLFNGEK 453
Query: 157 I--ILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLAR 214
+ I L A LD + + D VRE MH L+ ++ +
Sbjct: 454 VNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE--------------DIVEMHSLLQEMGK 499
Query: 215 WAAGEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSIC-DVE-------HLR 266
EI R + GE ++F + + + G K++ I D++ H
Sbjct: 500 ----EIV-RAQSNEPGE--REFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552
Query: 267 TFLPMELSHFDENY---------LAWSVLQMLLNHLP-RLRVFSLCGY-----------R 305
F M F + Y + W L ++LP +LR+ Y
Sbjct: 553 AFKGMRNLLFLKFYTKKWDQKKEVRWH-LPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPE 611
Query: 306 NIFNLP----------NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVD-EVFPKLRTLSL 354
N+ L + + +L LR ++L +K + IP D + L TL L
Sbjct: 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-------DLSMATNLETLKL 664
Query: 355 DNCCKLQGTLP---RRLLLLETLDITSCDQL--LVTIQCLPALSELQIDGCKRVVFSSPH 409
+C L LP + L LE LD++ C+ L L T L +L L + GC R+ S P
Sbjct: 665 SDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK-SFPD 722
Query: 410 LVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPE------L 463
+ + N+ + P ++R N ++ C + + + ++ QP L
Sbjct: 723 I--STNISWLDLDETAIEEFPSNLRLENLDELILC----EMKSEKLWERVQPLTPLMTML 776
Query: 464 PCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECD 523
L L LS L LP ++ L L + I +C +L + P
Sbjct: 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------- 822
Query: 524 ALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMH 583
+L SLE L + C+ L +FP+++ + + + + +E +P W+
Sbjct: 823 ---NLE---------SLESLDLSGCSRLRTFPDIS--TNISDLNLSRT-GIEEVP-WWI- 865
Query: 584 NELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISIS 643
E + L L+++ C+NL +S N LK+L+ D S +L E N S E++++
Sbjct: 866 -EKFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCGALTEASWNGSPSEVAMA 921
Query: 644 VLENLKSLPADLHNLHHLQKIWIFGCPNLE 673
LP+ + I C NL+
Sbjct: 922 TDNIHSKLPSTV-------CINFINCFNLD 944
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 17/253 (6%)
Query: 585 ELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLE---SLAERLDNTSLEEIS 641
E A + L LL + + SL L S L+ +L L SL+
Sbjct: 43 ESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNL 102
Query: 642 ISVLENLKSLPADLHNLHHLQKIWIFGCPNLESF-PEEGLPSTKLTELTIYDCENLKALP 700
+ N+ L +L NL L N+ P GL + L EL + D +++LP
Sbjct: 103 NRLRSNISEL-LELTNLTSLDL----DNNNITDIPPLIGLLKSNLKELDLSD-NKIESLP 156
Query: 701 NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRF 760
+ + NL +L NL +S +NL +LD+ KIS L ++L
Sbjct: 157 SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD--LPPEIELLSALEEL 214
Query: 761 TIWGGCPDLVSPPPFPA--SLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFS 818
+ + +L+ L +S+ + SIG NL++L+TL LS+ ++ S
Sbjct: 215 DL-SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG-NLSNLETLDLSNN-QISSIS 271
Query: 819 EQGLPKSLLQLHI 831
G +L +L +
Sbjct: 272 SLGSLTNLRELDL 284
|
Length = 394 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 28/146 (19%)
Query: 494 MRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVS 553
+ I DC + S P LP++L + IE C+ L +LP + LE L + C +
Sbjct: 57 LYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISG 109
Query: 554 FPEVA---------------LPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYC 598
PE +P+ L ++ I ++ +A + N + +L+ L ++ C
Sbjct: 110 LPESVRSLEIKGSATDSIKNVPNGLTSLSI---NSYNPENQARIDNLISPSLKTLSLTGC 166
Query: 599 SNLALLSRNGNLPQSLKYLKIEDCSK 624
SN+ L + LP+SL+ + + K
Sbjct: 167 SNIILPEK---LPESLQSITLHIEQK 189
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 839 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.89 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.89 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.89 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.89 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.88 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.87 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.86 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.85 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.84 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.62 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.59 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.41 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.37 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.37 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.36 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.19 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.19 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.12 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.02 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.74 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.66 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.63 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.6 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.58 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.58 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.44 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.4 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.4 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.34 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.34 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.33 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.32 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.28 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.28 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.28 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.26 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.25 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.18 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.15 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.98 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.83 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.61 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.6 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.54 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.41 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.37 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.2 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.05 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.96 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.86 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.83 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.75 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.62 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.5 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.29 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.15 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.07 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.76 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 94.93 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.87 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 94.86 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 94.45 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.75 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.66 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 93.28 | |
| PF05729 | 166 | NACHT: NACHT domain | 93.08 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.56 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.04 | |
| PF13173 | 128 | AAA_14: AAA domain | 90.74 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 89.94 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 89.92 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.13 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 87.29 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 87.01 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 85.91 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.2 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.2 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 83.5 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 83.18 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=525.46 Aligned_cols=481 Identities=31% Similarity=0.523 Sum_probs=356.6
Q ss_pred hhhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHH-hCCCCeEeCCCCCcccccCcC-----
Q 036119 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAER-MGADPVYQLKELSDDDCLDFT----- 75 (839)
Q Consensus 2 l~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-~~~~~~~~~~~l~~~~~~~~~----- 75 (839)
|.+.|++|||+|||||||+. .+|+.++.+++....||||++|||++.||.. |++...++++.|..+|||..|
T Consensus 254 i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~ 331 (889)
T KOG4658|consen 254 LLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVG 331 (889)
T ss_pred HHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhc
Confidence 67889999999999999997 6799999999999899999999999999988 888899999999999999332
Q ss_pred -----CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCC------CCCcchhc---------
Q 036119 76 -----RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRD------SDILPALR--------- 135 (839)
Q Consensus 76 -----~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~------~~~~~~l~--------- 135 (839)
.++.+.++|++||++|+|+|||++++|++|+.|++.++|+++.+...+.... +.+++.|+
T Consensus 332 ~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~ 411 (889)
T KOG4658|consen 332 PNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE 411 (889)
T ss_pred cccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH
Confidence 2355899999999999999999999999999999999999999865444222 14556666
Q ss_pred hhhhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhcccccccc--CCCcceeecHHHHHHH
Q 036119 136 LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSS--YDASRFVMHDLINDLA 213 (839)
Q Consensus 136 ~k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~--~~~~~~~mHdlv~~la 213 (839)
+|.||+|||+||+||.|+++++|.+|+|+||+.+...++.+++.|..|+.+||.+++++... .....|+|||+|||||
T Consensus 412 lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~a 491 (889)
T KOG4658|consen 412 LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMA 491 (889)
T ss_pred HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHH
Confidence 89999999999999999999999999999999986678999999999999999999999875 2468899999999999
Q ss_pred HHHcc-----CceEEeccc--ccccccccccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHH
Q 036119 214 RWAAG-----EICFRMEDT--LAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVL 286 (839)
Q Consensus 214 ~~i~~-----~e~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~ 286 (839)
.|+++ +|...+... .........+..+|+++.+..... .+..-..++.|++|+..+... ....+.
T Consensus 492 l~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~---~~~~~~~~~~L~tLll~~n~~-----~l~~is 563 (889)
T KOG4658|consen 492 LWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE---HIAGSSENPKLRTLLLQRNSD-----WLLEIS 563 (889)
T ss_pred HHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh---hccCCCCCCccceEEEeecch-----hhhhcC
Confidence 99999 554443331 111222334467899998876532 334445566899996654321 235566
Q ss_pred HHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc
Q 036119 287 QMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR 366 (839)
Q Consensus 287 ~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~ 366 (839)
.++|..++.||+|||++|...+.+|++|++|.|||||+++++.+ ..+|.++.+ |.+|.+|++.++..+. .+|.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~-----Lk~L~~Lnl~~~~~l~-~~~~ 636 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGN-----LKKLIYLNLEVTGRLE-SIPG 636 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHH-----HHhhheeccccccccc-cccc
Confidence 77899999999999999987899999999999999999999999 579999888 9999999999876554 4453
Q ss_pred ---CCCCccEEeecccC-----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCC-
Q 036119 367 ---RLLLLETLDITSCD-----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLN- 437 (839)
Q Consensus 367 ---~l~~L~~L~l~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~- 437 (839)
.|.+|++|.+.... .....+.++.+|+.++........+... .....|.
T Consensus 637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l----------------------~~~~~L~~ 694 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL----------------------LGMTRLRS 694 (889)
T ss_pred hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhh----------------------hhhHHHHH
Confidence 58899999876543 2234556666666666644332000000 0000010
Q ss_pred ---ceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccC------CCCCccEEeecCCCCCcccCCC
Q 036119 438 ---WLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALL------TLSSLTEMRIHDCASLVSFPQA 508 (839)
Q Consensus 438 ---~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~------~l~~L~~L~l~~~~~~~~l~~~ 508 (839)
.+.+.++.. ......++.+ .+|+.|.+.+|.+.+....+.. .++++..+.+.+|.........
T Consensus 695 ~~~~l~~~~~~~-------~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 695 LLQSLSIEGCSK-------RTLISSLGSL-GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HhHhhhhccccc-------ceeecccccc-cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 000000000 0001122222 5777777777766432222211 1456666667777666666655
Q ss_pred CCCCCccEEEeccCccccccc
Q 036119 509 ALPSQLRSVVIEECDALESLP 529 (839)
Q Consensus 509 ~~~~~L~~L~l~~~~~l~~~~ 529 (839)
..+|+|+.|.+..|..++.+.
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hccCcccEEEEecccccccCC
Confidence 667888888888877666554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=529.56 Aligned_cols=596 Identities=23% Similarity=0.348 Sum_probs=349.2
Q ss_pred hhhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCCCCeEeCCCCCcccccCcC------
Q 036119 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQLKELSDDDCLDFT------ 75 (839)
Q Consensus 2 l~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l~~~~~~~~~------ 75 (839)
++++|++||+||||||||+. .+|+.+.+...|+++|||||||||+++++..++++.+|+|+.++++|||++|
T Consensus 289 ~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 289 MEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 57889999999999999765 7899999988899999999999999999998988999999999999999433
Q ss_pred ---CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCCCCCcchhc----------hhhhhhh
Q 036119 76 ---RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRDSDILPALR----------LKQCFAY 142 (839)
Q Consensus 76 ---~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~----------~k~~f~~ 142 (839)
..+++.+++.+||++|+|+|||++++|+.|+++ +.++|+.++++..+ ..+.++.+.|+ .|.||++
T Consensus 367 ~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~-~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ 444 (1153)
T PLN03210 367 KNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN-GLDGKIEKTLRVSYDGLNNKKDKAIFRH 444 (1153)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh-CccHHHHHHHHHhhhccCccchhhhhhe
Confidence 224688999999999999999999999999998 78999999986433 23335555555 6899999
Q ss_pred hccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceeecHHHHHHHHHHccCceE
Q 036119 143 SSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICF 222 (839)
Q Consensus 143 ~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~~la~~i~~~e~~ 222 (839)
+|+|+++..+ +.+..|.+.+.+.. +..++.|++++|++.. .+.++|||++|+||+++++++..
T Consensus 445 ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~---~~~~~MHdLl~~~~r~i~~~~~~ 507 (1153)
T PLN03210 445 IACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR---EDIVEMHSLLQEMGKEIVRAQSN 507 (1153)
T ss_pred ehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc---CCeEEhhhHHHHHHHHHHHhhcC
Confidence 9999998754 45777877765542 1228889999999875 45799999999999999987641
Q ss_pred EecccccccccccccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeC
Q 036119 223 RMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLC 302 (839)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 302 (839)
. + .-|. ..+...+....+..-....+.+.+ .++..... ...+.+..|..|++|++|.+.
T Consensus 508 ---~----------~-~~r~--~l~~~~di~~vl~~~~g~~~v~~i-~l~~~~~~----~~~i~~~aF~~m~~L~~L~~~ 566 (1153)
T PLN03210 508 ---E----------P-GERE--FLVDAKDICDVLEDNTGTKKVLGI-TLDIDEID----ELHIHENAFKGMRNLLFLKFY 566 (1153)
T ss_pred ---C----------C-Ccce--eEeCHHHHHHHHHhCcccceeeEE-EeccCccc----eeeecHHHHhcCccccEEEEe
Confidence 0 0 1111 111111111111111111122211 01100000 011234456777777777775
Q ss_pred CCc------ccccccccccCcC-cCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccEEe
Q 036119 303 GYR------NIFNLPNEIGNLK-HLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLD 375 (839)
Q Consensus 303 ~~~------~~~~lp~~i~~L~-~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~ 375 (839)
.+. ....+|..+..++ +||+|++.++.+ ..+|..+ . +.+|++|++.+| .+. .+|.
T Consensus 567 ~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~-----~~~L~~L~L~~s-~l~-~L~~--------- 628 (1153)
T PLN03210 567 TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-R-----PENLVKLQMQGS-KLE-KLWD--------- 628 (1153)
T ss_pred cccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-C-----ccCCcEEECcCc-ccc-cccc---------
Confidence 442 0123444444442 355555554443 3333322 1 233444444332 111 1110
Q ss_pred ecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCccccccccc
Q 036119 376 ITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEE 455 (839)
Q Consensus 376 l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 455 (839)
.+..+
T Consensus 629 ---------~~~~l------------------------------------------------------------------ 633 (1153)
T PLN03210 629 ---------GVHSL------------------------------------------------------------------ 633 (1153)
T ss_pred ---------ccccC------------------------------------------------------------------
Confidence 00011
Q ss_pred ccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhC
Q 036119 456 HDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQN 535 (839)
Q Consensus 456 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 535 (839)
++|+.|+++++.....+|. +..+++|+.|++++|..+..+|. .+ .
T Consensus 634 ---------~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-----------------------si--~ 678 (1153)
T PLN03210 634 ---------TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-----------------------SI--Q 678 (1153)
T ss_pred ---------CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-----------------------hh--h
Confidence 2444444444443344443 55556666666666655554443 22 2
Q ss_pred CCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccc
Q 036119 536 SNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLK 615 (839)
Q Consensus 536 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 615 (839)
.+++|+.|++++|..++.+|....+++|+.|.+++|..++.+|.. +.+|+.|++.++. +..+|... .+++|+
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~------~~nL~~L~L~~n~-i~~lP~~~-~l~~L~ 750 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI------STNISWLDLDETA-IEEFPSNL-RLENLD 750 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc------cCCcCeeecCCCc-cccccccc-cccccc
Confidence 334444444444444444443333444445555444444333321 1234444444432 22222211 123455
Q ss_pred eeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccc
Q 036119 616 YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN 695 (839)
Q Consensus 616 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 695 (839)
+|.+.++..... .. ......+......++|+.|++++|+....+|..+..+++|+.|++++|+.
T Consensus 751 ~L~l~~~~~~~l-~~---------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 751 ELILCEMKSEKL-WE---------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred cccccccchhhc-cc---------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 555544322110 00 00000111122346777777777777777777777777777777777777
Q ss_pred cccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCC
Q 036119 696 LKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPF 775 (839)
Q Consensus 696 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 775 (839)
++.+|..+ ++++|+.|++++|..+..+|. .+++|++|++++|.+.. +|.+ ...+
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~-iP~s-i~~l--------------------- 868 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEE-VPWW-IEKF--------------------- 868 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCCCcc-ChHH-HhcC---------------------
Confidence 77777655 677777777777777666654 34677778877776653 2221 1222
Q ss_pred CcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccC
Q 036119 776 PASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFS 818 (839)
Q Consensus 776 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 818 (839)
++|+.|++++|+.++.+|..+..+++|+.+++++|+.|+.++
T Consensus 869 -~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 869 -SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -CCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 346666666666666666666666677777777776666544
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=390.88 Aligned_cols=504 Identities=18% Similarity=0.167 Sum_probs=241.0
Q ss_pred cccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCC
Q 036119 259 ICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGA 338 (839)
Q Consensus 259 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~ 338 (839)
+..+++|++| .+..|.+...++...+..+++||+|+|++|.+.+.+|. +.+++|++|++++|.+.+.+|..+
T Consensus 89 ~~~l~~L~~L------~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~ 160 (968)
T PLN00113 89 IFRLPYIQTI------NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI 160 (968)
T ss_pred HhCCCCCCEE------ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH
Confidence 4455555555 33333333344444555666666666666664444553 345666666666666655555555
Q ss_pred CCCccccCCCccEEeccCccccccCCCc---CCCCccEEeecccC---cccccCCCCCCccEEEeccccceeecCCCccc
Q 036119 339 GQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLETLDITSCD---QLLVTIQCLPALSELQIDGCKRVVFSSPHLVH 412 (839)
Q Consensus 339 ~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 412 (839)
+. +++|++|++++| .+.+.+|. .+.+|++|++++|. .+|..++.+++|++|++++|....
T Consensus 161 ~~-----l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------- 226 (968)
T PLN00113 161 GS-----FSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-------- 226 (968)
T ss_pred hc-----CCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC--------
Confidence 54 666666666664 44445553 34555666665554 345555666666666665554221
Q ss_pred eeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCcc
Q 036119 413 AVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLT 492 (839)
Q Consensus 413 ~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 492 (839)
.. ......+++|+.|++.++......+ ..+..+ ++|+.|++++|.+.+.+|.++.++++|+
T Consensus 227 -----------~~-p~~l~~l~~L~~L~L~~n~l~~~~p------~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 227 -----------EI-PYEIGGLTSLNHLDLVYNNLTGPIP------SSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred -----------cC-ChhHhcCCCCCEEECcCceeccccC------hhHhCC-CCCCEEECcCCeeeccCchhHhhccCcC
Confidence 00 0011233444444444332111000 011111 3445555555544444444445555555
Q ss_pred EEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCC-CCCCCCccEEEEcC
Q 036119 493 EMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE-VALPSQLRTIIIGG 570 (839)
Q Consensus 493 ~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~ 570 (839)
.|++++|.....+|. ...+++|+.|++.+|.....+|..+ ..+++|+.|++++|.....+|. +..+++|+.|++++
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 555554433333332 1234445555555444433333332 2344455555554444333331 23334444454444
Q ss_pred CCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceeeeccccccc
Q 036119 571 CHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLK 649 (839)
Q Consensus 571 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~ 649 (839)
|.....+|.... ..++|+.|++.+|.....++..+. .++|+.|++++|.+.+
T Consensus 366 n~l~~~~p~~~~---------------------------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 366 NNLTGEIPEGLC---------------------------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CeeEeeCChhHh---------------------------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 433333333222 123444444444443333333222 2445555555555444
Q ss_pred CccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CC
Q 036119 650 SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GF 728 (839)
Q Consensus 650 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~ 728 (839)
.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|+..+.+|..+ ..++|+.|++++|++...+|.. ..
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence 444444455555555555554444444444444455555555554444444332 2344555555555444444432 33
Q ss_pred CCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCe
Q 036119 729 PTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKT 805 (839)
Q Consensus 729 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 805 (839)
+++|++|++++|.+.+.+|. .+..+++|+.|++++|... ...|. -+++|+.|++++|...+.+|..+..+++|+.
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLS-GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhccCEEECcCCcceeeCCh-HHcCccCCCEEECCCCccc-ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 44455555555554443332 1233444555555442111 11111 2346778888888877778877777888888
Q ss_pred eeccCCCCccccCCCCCCcccceeeecCCC
Q 036119 806 LRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 806 L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
|++++|+....+|..+.+.++....+.+++
T Consensus 576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 576 VNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred EeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 888888666667665544444444444443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=385.47 Aligned_cols=484 Identities=18% Similarity=0.177 Sum_probs=363.7
Q ss_pred HHHhcCCCceeEEEeCCCccccccccccc-CcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC
Q 036119 287 QMLLNHLPRLRVFSLCGYRNIFNLPNEIG-NLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP 365 (839)
Q Consensus 287 ~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp 365 (839)
+..|..+++|++|+|++|.+.+.+|..+. .+.+|++|++++|.+.+.+|.+ . +++|++|++++| .+.+.+|
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~-----l~~L~~L~Ls~n-~~~~~~p 157 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--S-----IPNLETLDLSNN-MLSGEIP 157 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc--c-----cCCCCEEECcCC-cccccCC
Confidence 45677888888888888885557887665 8888888888888887777752 2 788888888886 5555677
Q ss_pred c---CCCCccEEeecccC---cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCce
Q 036119 366 R---RLLLLETLDITSCD---QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWL 439 (839)
Q Consensus 366 ~---~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L 439 (839)
. .+.+|++|++++|. .+|..++++++|++|++++|.... .++..+.
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------------~~p~~l~----- 209 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-----------------------QIPRELG----- 209 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-----------------------cCChHHc-----
Confidence 4 56677888887775 466777788888888887765321 0011111
Q ss_pred ecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEE
Q 036119 440 QISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVV 518 (839)
Q Consensus 440 ~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~ 518 (839)
.+ ++|+.|++++|.+.+.+|..++++++|+.|++++|...+.+|. ...+++|+.|.
T Consensus 210 ----------------------~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 210 ----------------------QM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred ----------------------Cc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 11 3677777777777666777777777777777777755544543 34467777777
Q ss_pred eccCccccccchhhhhCCCCccceEecccCCCCcCCCC-CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEee
Q 036119 519 IEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE-VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSY 597 (839)
Q Consensus 519 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 597 (839)
+++|.....+|..+ ..+++|+.|++++|.....+|. +..+++|+.|++++|.....+|..+... ++|+.|++.+
T Consensus 267 L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~ 341 (968)
T PLN00113 267 LYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL---PRLQVLQLWS 341 (968)
T ss_pred CcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC---CCCCEEECcC
Confidence 77776555555444 3457777777777766555553 3556677777777776555555443321 4678888887
Q ss_pred cCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccC
Q 036119 598 CSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFP 676 (839)
Q Consensus 598 c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 676 (839)
|.....++......++|+.|++++|.....++..+. .++|+.|++++|.+.+.+|..+..+++|+.|++++|...+.+|
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 765545544333446899999999877666665544 4889999999999999999999999999999999999988899
Q ss_pred CCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccc
Q 036119 677 EEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTS 756 (839)
Q Consensus 677 ~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 756 (839)
..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+...+|.....++|+.|++++|++.+..+.. +..+++
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~ 500 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSLSE 500 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh-hhhhhc
Confidence 8889999999999999999998998889999999999999999988887766789999999999999877653 567899
Q ss_pred cceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCC-CCCcccceeeec
Q 036119 757 LRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQ-GLPKSLLQLHIY 832 (839)
Q Consensus 757 L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~ 832 (839)
|+.|++++|- -...+|. .+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|.. .-.++|++|+++
T Consensus 501 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 501 LMQLKLSENK-LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred cCEEECcCCc-ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 9999999852 2223333 3578999999999999999999999999999999999665566652 223689999999
Q ss_pred CCCC
Q 036119 833 ACPL 836 (839)
Q Consensus 833 ~c~~ 836 (839)
+|+.
T Consensus 580 ~N~l 583 (968)
T PLN00113 580 HNHL 583 (968)
T ss_pred CCcc
Confidence 9974
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=260.97 Aligned_cols=433 Identities=21% Similarity=0.317 Sum_probs=282.0
Q ss_pred ChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceeecHHHHHHHHHHccCceEEecccccccc
Q 036119 153 QDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICFRMEDTLAGEN 232 (839)
Q Consensus 153 ~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~~la~~i~~~e~~~~~~~~~~~~ 232 (839)
+.+..+...++.++++...+...|++...++-.+.+.+...++. ...+.+.++-+.+......+
T Consensus 467 ~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~--~r~~l~~~~di~~vl~~~~g-------------- 530 (1153)
T PLN03210 467 DVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPG--EREFLVDAKDICDVLEDNTG-------------- 530 (1153)
T ss_pred CchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCC--cceeEeCHHHHHHHHHhCcc--------------
Confidence 34455777888888876555567888777777776644322221 23445555444444332111
Q ss_pred cccccccceEEEEEccccchh-hcccccccccccccccccccccccchhhhHHHHHHHhcCC-CceeEEEeCCCcccccc
Q 036119 233 RQKFSESLRHFSYICGEYDGE-KRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHL-PRLRVFSLCGYRNIFNL 310 (839)
Q Consensus 233 ~~~~~~~~r~ls~~~~~~~~~-~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~l 310 (839)
...++.+++.....+.. .....|..+++|+.|.+.....-..+...... ++.|..+ .+||+|++.++. +..+
T Consensus 531 ----~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l-p~~~~~lp~~Lr~L~~~~~~-l~~l 604 (1153)
T PLN03210 531 ----TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHL-PEGFDYLPPKLRLLRWDKYP-LRCM 604 (1153)
T ss_pred ----cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeec-CcchhhcCcccEEEEecCCC-CCCC
Confidence 13345554433222111 11235778888888855432100111111222 2334444 469999999999 9999
Q ss_pred cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccEEeecccCcccccCCCCC
Q 036119 311 PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLP 390 (839)
Q Consensus 311 p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~l~~~~~l~~~l~~l~ 390 (839)
|..+ ...+|+.|++++|.+ ..+|.++.. +++|+.|++++|..+. .+|. ++.++
T Consensus 605 P~~f-~~~~L~~L~L~~s~l-~~L~~~~~~-----l~~Lk~L~Ls~~~~l~-~ip~-------------------ls~l~ 657 (1153)
T PLN03210 605 PSNF-RPENLVKLQMQGSKL-EKLWDGVHS-----LTGLRNIDLRGSKNLK-EIPD-------------------LSMAT 657 (1153)
T ss_pred CCcC-CccCCcEEECcCccc-ccccccccc-----CCCCCEEECCCCCCcC-cCCc-------------------cccCC
Confidence 9888 579999999999998 567777766 9999999999976554 5553 34456
Q ss_pred CccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEE
Q 036119 391 ALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFL 470 (839)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L 470 (839)
+|++|++.+|.... .++..+.+ + ++|+.|
T Consensus 658 ~Le~L~L~~c~~L~-----------------------~lp~si~~---------------------------L-~~L~~L 686 (1153)
T PLN03210 658 NLETLKLSDCSSLV-----------------------ELPSSIQY---------------------------L-NKLEDL 686 (1153)
T ss_pred cccEEEecCCCCcc-----------------------ccchhhhc---------------------------c-CCCCEE
Confidence 66666666654221 00111111 1 367777
Q ss_pred EeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCC
Q 036119 471 ELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNS 550 (839)
Q Consensus 471 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 550 (839)
++++|...+.+|..+ ++++|+.|++++|..+..+|. .+.+|+.|.++++. ++.+|.. ..+++|+.|.+.++..
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~lP~~---~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IEEFPSN---LRLENLDELILCEMKS 759 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-ccccccc---ccccccccccccccch
Confidence 888777777788755 788999999999988777765 35789999998876 5566654 2467888888876543
Q ss_pred CcC------CC--CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccC
Q 036119 551 LVS------FP--EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC 622 (839)
Q Consensus 551 l~~------~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~ 622 (839)
... ++ ....+++|+.|++++|+.+..+|..+... ++|+.|++.+|..++.+|... .+++|+.|++++|
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L---~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL---HKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCC---CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 211 11 11235688888888888888887764432 478888888888887777643 4567888888888
Q ss_pred CCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc
Q 036119 623 SKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL 699 (839)
Q Consensus 623 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 699 (839)
..+..++.. .++++.|++++|.+. .+|.++..+++|+.|++++|+.+..+|.....+++|+.+++++|..+..+
T Consensus 836 ~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 836 SRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred Ccccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 777666542 257788888877664 56777778888888888888777777777777778888888888766544
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-25 Score=238.24 Aligned_cols=436 Identities=22% Similarity=0.203 Sum_probs=236.2
Q ss_pred HHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR- 366 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~- 366 (839)
+++.+..+|+.|++++|. +...|..+..+.+|+.|+++.|.| ...|.+... +.+|++|+|.++ .+. .+|.
T Consensus 39 ~~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~-----~~~l~~lnL~~n-~l~-~lP~~ 109 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNYI-RSVPSSCSN-----MRNLQYLNLKNN-RLQ-SLPAS 109 (1081)
T ss_pred HHhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccchhhH-hhCchhhhh-----hhcchhheeccc-hhh-cCchh
Confidence 345555669999999999 999999999999999999999998 667876666 999999999984 665 6663
Q ss_pred --CCCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecc
Q 036119 367 --RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQIS 442 (839)
Q Consensus 367 --~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 442 (839)
.+++|+.|+++++. ..|..+..++.+..+..++|...
T Consensus 110 ~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~--------------------------------------- 150 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKI--------------------------------------- 150 (1081)
T ss_pred HHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhh---------------------------------------
Confidence 34555556665554 34444555555555555544211
Q ss_pred cCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccC
Q 036119 443 RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEEC 522 (839)
Q Consensus 443 ~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~ 522 (839)
+.++. ..++.+++..+...+.++..+..+.. .|++.+|... ......+++|+.+....+
T Consensus 151 ---------------~~lg~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn 209 (1081)
T KOG0618|consen 151 ---------------QRLGQ--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERN 209 (1081)
T ss_pred ---------------hhhcc--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhc
Confidence 11111 13555566666555666665655555 5777776444 223334566666665554
Q ss_pred ccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcc
Q 036119 523 DALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLA 602 (839)
Q Consensus 523 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 602 (839)
...... ..-++|+.|+..+|+..+..+ ...+.+|++++++++ .+..+|.....
T Consensus 210 ~ls~l~------~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n-~l~~lp~wi~~------------------- 262 (1081)
T KOG0618|consen 210 QLSELE------ISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHN-NLSNLPEWIGA------------------- 262 (1081)
T ss_pred ccceEE------ecCcchheeeeccCcceeecc-ccccccceeeecchh-hhhcchHHHHh-------------------
Confidence 422111 223677777777776663322 234456777777766 34445522211
Q ss_pred cccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCC-
Q 036119 603 LLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLP- 681 (839)
Q Consensus 603 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~- 681 (839)
+.+|+.+.+..|............++|+.|.+..|.+ ..+|.....+.+|++|++..|.+ .++|+.+..
T Consensus 263 --------~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v 332 (1081)
T KOG0618|consen 263 --------CANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAV 332 (1081)
T ss_pred --------cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhccc-cccchHHHhh
Confidence 2344444444443322222222335555555555554 33444455566666666666532 334432211
Q ss_pred -CCCcceEecccccccccccc-cCcccccccccccccccCCccCCC-CCCCCCcceEEecCCCCCCccccccCCCccccc
Q 036119 682 -STKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSVVSFPE-DGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLR 758 (839)
Q Consensus 682 -~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 758 (839)
..+|+.|+.+.|+ +...|. +=...+.|+.|.+.+|.+...... ...++.|++|++++|++.. +|+....+++.|+
T Consensus 333 ~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~Le 410 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELE 410 (1081)
T ss_pred hhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhH
Confidence 1224444444443 222221 112344555555555555443322 2445556666666655542 3444455555555
Q ss_pred eEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccC-CCCCC-cccceeeecC
Q 036119 759 RFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFS-EQGLP-KSLLQLHIYA 833 (839)
Q Consensus 759 ~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~-~sL~~L~i~~ 833 (839)
.|.++|| .+..+|. .+..|+.|...+| .+...| .+..++.|+.+|+|.| +|+.+. +...| |.|++|+++|
T Consensus 411 eL~LSGN--kL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 411 ELNLSGN--KLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred HHhcccc--hhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccC
Confidence 5666553 2333333 2344555555555 233445 4555666666666643 555432 23344 5666666666
Q ss_pred CCC
Q 036119 834 CPL 836 (839)
Q Consensus 834 c~~ 836 (839)
++.
T Consensus 486 N~~ 488 (1081)
T KOG0618|consen 486 NTR 488 (1081)
T ss_pred Ccc
Confidence 653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-27 Score=230.24 Aligned_cols=451 Identities=23% Similarity=0.263 Sum_probs=241.4
Q ss_pred HhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcC-
Q 036119 289 LLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRR- 367 (839)
Q Consensus 289 ~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~- 367 (839)
.+.++..|.+|++.+|. ..++|.+++++..++.|+.++|++ ..+|..++. +.+|..|+++++ .+. .+|+.
T Consensus 63 dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s-----~~~l~~l~~s~n-~~~-el~~~i 133 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKL-SELPEQIGS-----LISLVKLDCSSN-ELK-ELPDSI 133 (565)
T ss_pred hhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchH-hhccHHHhh-----hhhhhhhhcccc-cee-ecCchH
Confidence 35666677777777777 667777777777777777777776 456666655 677777777764 444 45543
Q ss_pred --CCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceeccc
Q 036119 368 --LLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISR 443 (839)
Q Consensus 368 --l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~ 443 (839)
+..|+.|+...+. .+|..++.+.+|..|.+.+|.....++. . ..++.|++++...
T Consensus 134 ~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~--------------------~-i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN--------------------H-IAMKRLKHLDCNS 192 (565)
T ss_pred HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH--------------------H-HHHHHHHhcccch
Confidence 3344455444443 5566666666666666666653331110 0 0022222222111
Q ss_pred CCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCC--CCCCCccEEEecc
Q 036119 444 CPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQA--ALPSQLRSVVIEE 521 (839)
Q Consensus 444 ~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~--~~~~~L~~L~l~~ 521 (839)
- -++.++ ..++.+ .+|+.|++..|.+ ..+| .|.++..|+++.+..| .+..+|.. ..++++..|++.+
T Consensus 193 N-~L~tlP------~~lg~l-~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 193 N-LLETLP------PELGGL-ESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred h-hhhcCC------hhhcch-hhhHHHHhhhccc-ccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc
Confidence 0 000000 001111 3555566666655 3455 4666666666666554 34444432 2366666777766
Q ss_pred CccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEE-eecCC
Q 036119 522 CDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEV-SYCSN 600 (839)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l-~~c~~ 600 (839)
|+ ++.+|... .-+.+|+.|++++|....-.+..+.+ .|+.|.+.+++ ++.+......+....-|++|.- ..|..
T Consensus 262 Nk-lke~Pde~--clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 262 NK-LKEVPDEI--CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cc-cccCchHH--HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 64 55556543 33456777777766544333344555 66666666664 2333222222111111111110 00000
Q ss_pred ccc------cc---CCCCc-----ccccceeEeccCCCchhhhhh----cCCCCcceeeecccccccCccccccCCCCCC
Q 036119 601 LAL------LS---RNGNL-----PQSLKYLKIEDCSKLESLAER----LDNTSLEEISISVLENLKSLPADLHNLHHLQ 662 (839)
Q Consensus 601 l~~------~~---~~~~~-----~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 662 (839)
+.. .. ..+.+ ..+.+.|.+++- .+..+|.. ....-...++++.|++ ..+|..+..+..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHH
Confidence 000 00 00111 124566666553 23333322 1123366777777766 34565555555555
Q ss_pred eEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCC
Q 036119 663 KIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLK 741 (839)
Q Consensus 663 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 741 (839)
+.-+..+...+-+|..+..+++|..|++++| .+..+|..++.+..|+.|+++.|++- .+|.. ..+..|+.+-.++|+
T Consensus 415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 5444455555556666666777777888765 56777777777777888888877653 45544 233445555555565
Q ss_pred CCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCC
Q 036119 742 ISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPK 813 (839)
Q Consensus 742 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~ 813 (839)
+.. ++..+..++. +|..||+.+| .+..+|..++++++|++|++++||.
T Consensus 493 i~~-vd~~~l~nm~----------------------nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 493 IGS-VDPSGLKNMR----------------------NLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccc-cChHHhhhhh----------------------hcceeccCCC-chhhCChhhccccceeEEEecCCcc
Confidence 543 2222233333 5677777777 5577888999999999999999964
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-24 Score=218.59 Aligned_cols=266 Identities=17% Similarity=0.170 Sum_probs=127.4
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCC--CCCCCccEEEeccCcccccc-chhhhhCCCCccce
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQA--ALPSQLRSVVIEECDALESL-PEAWMQNSNSSLEC 542 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~ 542 (839)
++++|+|++|.+..--...|.++.+|..|.++.| .++.+|.. ..+|+|+.|++..|.. +.+ ...| .++++|+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltF--qgL~Sl~n 249 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTF--QGLPSLQN 249 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccce-eeehhhhh--cCchhhhh
Confidence 5555666655554333344555555666666554 33333332 1255555555555432 111 1111 44555555
Q ss_pred EecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEecc
Q 036119 543 LAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIED 621 (839)
Q Consensus 543 L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 621 (839)
|.+..|..-+--. .+..+.+++.|++..+ .+..+..+++.+. ++|+.|+++++..-..-...-.+.++|+.|++++
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgL--t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGL--TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccc-hhhhhhccccccc--chhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 5555543322111 1223345555555554 2333433333332 3444555554432221112223345566666665
Q ss_pred CCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC---CCCCCCCcceEecccccccc
Q 036119 622 CSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE---EGLPSTKLTELTIYDCENLK 697 (839)
Q Consensus 622 ~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~ 697 (839)
|...+--+..+. ...|+.|+|++|++.......|..+.+|++|++++|.+.-.+.+ .+..+++|+.|.+.+|+ ++
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk 405 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LK 405 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-ee
Confidence 543322222222 25566666666665544444455666666666666654332221 33445666666666653 44
Q ss_pred ccc-ccCcccccccccccccccCCccCCCCCCCCCcceEEecC
Q 036119 698 ALP-NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHD 739 (839)
Q Consensus 698 ~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 739 (839)
.+| ..|.++++|+.|++.+|.+...-|.......|++|.++.
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 444 245666666666666666655555444444666665543
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-24 Score=225.46 Aligned_cols=166 Identities=41% Similarity=0.735 Sum_probs=124.3
Q ss_pred hhhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCC-CCeEeCCCCCcccccCcC-----
Q 036119 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGA-DPVYQLKELSDDDCLDFT----- 75 (839)
Q Consensus 2 l~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~-~~~~~~~~l~~~~~~~~~----- 75 (839)
+++.|+++++||||||||+. .+|+.+...++.+..||+||||||+++++..++. ...|+|++|+++||++++
T Consensus 94 l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 94 LRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAG 171 (287)
T ss_dssp HHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHT
T ss_pred chhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999875 5899999888888889999999999999877765 679999999999999432
Q ss_pred -----CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCC-----CCCcchhc---------h
Q 036119 76 -----RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRD-----SDILPALR---------L 136 (839)
Q Consensus 76 -----~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~-----~~~~~~l~---------~ 136 (839)
..+.+.+.+.+|+++|+|+|||++++|+.|+.+.+.++|+.+++...+...+ ..+...+. +
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~ 251 (287)
T PF00931_consen 172 RKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDEL 251 (287)
T ss_dssp SHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccH
Confidence 1244568999999999999999999999997766778999988753333321 12233332 8
Q ss_pred hhhhhhhccCCCCcccChhHHHHHHHHcCCCcc
Q 036119 137 KQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQ 169 (839)
Q Consensus 137 k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~ 169 (839)
|.||.|||+||+++.|+++.++++|+++||+..
T Consensus 252 ~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 252 RRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred HHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999999975
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-24 Score=232.98 Aligned_cols=396 Identities=24% Similarity=0.282 Sum_probs=233.9
Q ss_pred ccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCC
Q 036119 258 SICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCG 337 (839)
Q Consensus 258 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~ 337 (839)
.+..+.+|+.| .+..|+ ....|....++++|++|.|.+|. ...+|.++..+++|++||+++|.+ +.+|.-
T Consensus 63 ~it~l~~L~~l------n~s~n~--i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~ 132 (1081)
T KOG0618|consen 63 QITLLSHLRQL------NLSRNY--IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHF-GPIPLV 132 (1081)
T ss_pred hhhhHHHHhhc------ccchhh--HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhcc-CCCchh
Confidence 34455666666 444444 34455678899999999999998 899999999999999999999988 566655
Q ss_pred CCCCccccCCCccEEeccCccccccCCCcCCCCccEEeecccC---cccccCCCCCCccEEEecccccee--ecCCCccc
Q 036119 338 AGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCD---QLLVTIQCLPALSELQIDGCKRVV--FSSPHLVH 412 (839)
Q Consensus 338 ~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~ 412 (839)
+.. ++.+..+..++|.++. .++..- .+.+++..+. .++..+.+++. .|++..|.... ......++
T Consensus 133 i~~-----lt~~~~~~~s~N~~~~-~lg~~~--ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~ 202 (1081)
T KOG0618|consen 133 IEV-----LTAEEELAASNNEKIQ-RLGQTS--IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLE 202 (1081)
T ss_pred HHh-----hhHHHHHhhhcchhhh-hhcccc--chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchh
Confidence 444 6666666666652222 222211 3333333332 23333333433 45555544321 00000000
Q ss_pred eeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCcc
Q 036119 413 AVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLT 492 (839)
Q Consensus 413 ~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 492 (839)
.++... .....+...-++|+.|....++-.+. .....|.+|++++++.+.+ ..+|.|+..+++|+
T Consensus 203 ~l~c~r-----n~ls~l~~~g~~l~~L~a~~n~l~~~---------~~~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 203 VLHCER-----NQLSELEISGPSLTALYADHNPLTTL---------DVHPVPLNLQYLDISHNNL-SNLPEWIGACANLE 267 (1081)
T ss_pred hhhhhh-----cccceEEecCcchheeeeccCcceee---------ccccccccceeeecchhhh-hcchHHHHhcccce
Confidence 000000 00001112233444444444432211 1111235777788877776 56777777788888
Q ss_pred EEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCC-CCCCCCCccEEEEcCC
Q 036119 493 EMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGC 571 (839)
Q Consensus 493 ~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~ 571 (839)
.+++.+|.. ..+| ... ....+|+.|.+..|. ++.+| ......+|++|++..+
T Consensus 268 ~l~~n~N~l-~~lp-----------------------~ri--~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 268 ALNANHNRL-VALP-----------------------LRI--SRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred EecccchhH-HhhH-----------------------HHH--hhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 777777633 2222 111 122455555555543 23333 2334566777777766
Q ss_pred CCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhh--hhcCCCCcceeeeccccccc
Q 036119 572 HALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLA--ERLDNTSLEEISISVLENLK 649 (839)
Q Consensus 572 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~ 649 (839)
++..+|...+... + .+|..|+.+.++ +...+ +......|+.|.+.+|.++.
T Consensus 321 -~L~~lp~~~l~v~-~------------------------~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 321 -NLPSLPDNFLAVL-N------------------------ASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred -cccccchHHHhhh-h------------------------HHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccc
Confidence 3555555333211 0 112222222221 11111 11123567788888888887
Q ss_pred CccccccCCCCCCeEEecCCCCCcccCC-CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCC
Q 036119 650 SLPADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGF 728 (839)
Q Consensus 650 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 728 (839)
...+.+.++.+|+.|++++|.. ..+|. .+..++.|++|++|+| .++.+|..+..++.|+.|...+|.+. .+|+...
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLL-SFPELAQ 450 (1081)
T ss_pred cchhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCcee-echhhhh
Confidence 7766888999999999999954 45665 5667889999999998 57889999999999999999988876 6777788
Q ss_pred CCCcceEEecCCCCCCc
Q 036119 729 PTNLQSLDVHDLKISKP 745 (839)
Q Consensus 729 ~~~L~~L~l~~~~~~~~ 745 (839)
++.|+.+|+|.|.+...
T Consensus 451 l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cCcceEEecccchhhhh
Confidence 99999999999988753
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-23 Score=210.76 Aligned_cols=340 Identities=15% Similarity=0.079 Sum_probs=172.8
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCC-CCccEEEeccCccccccchhhhhCCCCccc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALP-SQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+|+.-+.|++++|.+...-+..+.++++|+++++.+| .++.+|..+.. ..|+.|++.+|..-+.-.... ..++.|+
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alr 152 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALR 152 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHH--HhHhhhh
Confidence 4467788899888876656667788999999998876 67778877664 448888888876433222222 3457788
Q ss_pred eEecccCCCCcCCC--CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEe
Q 036119 542 CLAIRSCNSLVSFP--EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKI 619 (839)
Q Consensus 542 ~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 619 (839)
.|+++.|.. ..++ .+..-.++++|++.++. +..+..+.+... .+|..|.++++...+.....+..++.|+.|++
T Consensus 153 slDLSrN~i-s~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~l--nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 153 SLDLSRNLI-SEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSL--NSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhchh-hcccCCCCCCCCCceEEeecccc-cccccccccccc--chheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 888877643 3333 22333467777777763 344443333332 35555666655433322222332345566655
Q ss_pred ccCCCchh-hhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccc
Q 036119 620 EDCSKLES-LAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA 698 (839)
Q Consensus 620 ~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 698 (839)
..|..-.. ....-+.++|+.|.+..|.+..---..|..+.++++|++..|+....-..++.++++|+.|++|+|.+...
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 55432111 11111224555555555544332222344455555555555544333333444455555555555544444
Q ss_pred ccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCC----CCCcCC-
Q 036119 699 LPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGC----PDLVSP- 772 (839)
Q Consensus 699 lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~----~~~~~~- 772 (839)
-+++...+++|++|++++|.+...-+.. ..+..|++|++++|++.. +.+..+..+.+|+.|++..|- .+..+.
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 4444455555555555555543222221 334455555555555442 122233444444444444331 111110
Q ss_pred CCCCcccceeeecCCCCCCcccc-CCCCCCccCeeeccCC
Q 036119 773 PPFPASLTNLWISDMPDLESISS-IGENLTSLKTLRLSDC 811 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c 811 (839)
...+++|++|++.+|.. +.||. .+..+++|++|++.+|
T Consensus 388 f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hccchhhhheeecCcee-eecchhhhccCcccceecCCCC
Confidence 11244555555555532 33332 2355666666666655
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-24 Score=220.56 Aligned_cols=357 Identities=19% Similarity=0.260 Sum_probs=206.3
Q ss_pred cccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEec
Q 036119 275 HFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSL 354 (839)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L 354 (839)
.+..|.+....+|.....|++++.|.|.... +..+|+.++.|.+|++|.+++|++. .+-.++.. |+.|+.+++
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-----Lp~LRsv~~ 85 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-----LPRLRSVIV 85 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-----chhhHHHhh
Confidence 4455666666677778899999999999998 9999999999999999999999873 34444555 899999999
Q ss_pred cCccccccCCCc---CCCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeeccccccccccccc
Q 036119 355 DNCCKLQGTLPR---RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRL 429 (839)
Q Consensus 355 ~~~~~l~~~lp~---~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~ 429 (839)
+.|+--...+|. .+..|+.|+++.+. .+|..+..-+++-+|++++|+..+++.. +
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~--------------------l 145 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNS--------------------L 145 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCch--------------------H
Confidence 986433335665 34456666666665 6667777777777777777664432221 0
Q ss_pred CCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCc-ccCCC
Q 036119 430 PQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLV-SFPQA 508 (839)
Q Consensus 430 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~ 508 (839)
+-+| ..|-.|+|++|.. +.+|+.+..+.+|++|.+++|+..- .+...
T Consensus 146 ---finL----------------------------tDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 146 ---FINL----------------------------TDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred ---HHhh----------------------------HhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 0011 2455667777666 6677777777777777777775321 11111
Q ss_pred CCCCCccEEEeccCcc-ccccchhhhhCCCCccceEecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccC
Q 036119 509 ALPSQLRSVVIEECDA-LESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNEL 586 (839)
Q Consensus 509 ~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 586 (839)
..+.+|+.|.+++... +..+|... ..+.+|..++++.|+.. .+| ....+++|+.|+++++.
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~-------------- 256 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK-------------- 256 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc--------------
Confidence 1233444444444322 22233222 23345555555443221 222 12233344444444432
Q ss_pred CCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCcceeeecccccc-cCccccccCCCCCCeE
Q 036119 587 PATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENL-KSLPADLHNLHHLQKI 664 (839)
Q Consensus 587 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L 664 (839)
++.+........+|++|+++.|.. ..+|..+ ..+.|+.|.+.+|++. .-+|++++.+..|+.+
T Consensus 257 --------------iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 257 --------------ITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred --------------eeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 111111111223455666655532 2333322 2356666666666544 4456666666666666
Q ss_pred EecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCC
Q 036119 665 WIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFP 724 (839)
Q Consensus 665 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 724 (839)
...+| .++.+|+.+..|+.|+.|.++.|. +-++|+.++-++-|+.|++..|+.+...|
T Consensus 322 ~aanN-~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 322 HAANN-KLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred Hhhcc-ccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCC
Confidence 66665 455666666666666666665553 44466666666666666666666665444
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-23 Score=215.45 Aligned_cols=358 Identities=19% Similarity=0.230 Sum_probs=248.2
Q ss_pred cCCCceeEEEeCCCccc-ccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC---c
Q 036119 291 NHLPRLRVFSLCGYRNI-FNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP---R 366 (839)
Q Consensus 291 ~~l~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp---~ 366 (839)
+-++-.|-.|+++|.+. ...|+++..+..++.|.|..+++ ..+|.+++. |.+|++|.+++| ++. .+- +
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~-----lqkLEHLs~~HN-~L~-~vhGELs 75 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSR-----LQKLEHLSMAHN-QLI-SVHGELS 75 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHH-----Hhhhhhhhhhhh-hhH-hhhhhhc
Confidence 34567888999999866 56999999999999999999998 678888877 999999999996 554 222 2
Q ss_pred CCCCccEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecc
Q 036119 367 RLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQIS 442 (839)
Q Consensus 367 ~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 442 (839)
.++.|+.+.+..+. .+|..+-.+..|..|+++.|+.... +. +|+.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev------------------------P~---~LE~---- 124 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV------------------------PT---NLEY---- 124 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc------------------------ch---hhhh----
Confidence 46667777666554 6777777777888888777753221 11 1110
Q ss_pred cCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccc-cCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEec
Q 036119 443 RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQA-LLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIE 520 (839)
Q Consensus 443 ~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~ 520 (839)
..++-.|+|++|++ ..+|.. +.+++.|-.|++++| .+..+|+ ...+..|++|.++
T Consensus 125 ---------------------AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 125 ---------------------AKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred ---------------------hcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcC
Confidence 03667788888877 566653 457888888888886 4555554 3346677777777
Q ss_pred cCccccccchhhhhCCCCccceEecccCCCC-cCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeec
Q 036119 521 ECDALESLPEAWMQNSNSSLECLAIRSCNSL-VSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYC 598 (839)
Q Consensus 521 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 598 (839)
+|+.... ... ...++++|+.|.+++.... ..+| .+..+.+|..++++.+
T Consensus 182 ~NPL~hf-QLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N--------------------------- 232 (1255)
T KOG0444|consen 182 NNPLNHF-QLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN--------------------------- 232 (1255)
T ss_pred CChhhHH-HHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---------------------------
Confidence 7653211 000 0022344555555543321 2233 2223334444444433
Q ss_pred CCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCC-cccCC
Q 036119 599 SNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNL-ESFPE 677 (839)
Q Consensus 599 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~ 677 (839)
. +..+|...-..++|+.|++++|...+--.....-.+|++|+++.|++ ..+|..++.+++|+.|.+.+|+.. +-+|.
T Consensus 233 ~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 233 N-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred C-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 2 22222222224679999999986543222212237899999999988 468999999999999999999865 45899
Q ss_pred CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 678 EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 678 ~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
.++.+.+|+++..++| .+..+|+++..|+.|++|.++.|+.++ +|.. ..++.|+.||+..|+..
T Consensus 311 GIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred chhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence 9999999999999887 689999999999999999999999875 5554 88999999999999876
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-24 Score=211.11 Aligned_cols=406 Identities=20% Similarity=0.229 Sum_probs=212.7
Q ss_pred HHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccC
Q 036119 284 SVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGT 363 (839)
Q Consensus 284 ~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 363 (839)
..+|..+..+..|+.|+.+.|. ...+|++++.+..|..|+..+|++ ..+|.++.. +.+|..|++.+| ++. .
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~i-~slp~~~~~-----~~~l~~l~~~~n-~l~-~ 174 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQI-SSLPEDMVN-----LSKLSKLDLEGN-KLK-A 174 (565)
T ss_pred hhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccccc-ccCchHHHH-----HHHHHHhhcccc-chh-h
Confidence 3445556677777777777777 777777777777777777777777 456666665 777777777774 555 5
Q ss_pred CCc---CCCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCc
Q 036119 364 LPR---RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNW 438 (839)
Q Consensus 364 lp~---~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~ 438 (839)
+|. .+..|++|+...+. .+|..++.+.+|..|++..|+....+++ ..+..|++
T Consensus 175 l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef----------------------~gcs~L~E 232 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEF----------------------PGCSLLKE 232 (565)
T ss_pred CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCC----------------------CccHHHHH
Confidence 553 45667777665554 6777788888888887777765443321 22222333
Q ss_pred eecccCCCcccccccccccCCC-----CCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCC
Q 036119 439 LQISRCPQLISLVTVEEHDQQQ-----PELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPS 512 (839)
Q Consensus 439 L~l~~~~~l~~~~~~~~~~~~~-----~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~ 512 (839)
+++. ++....+ ..+ +++..||+++|++ +++|..+..+.+|++|++++|. +..+|. .+.+
T Consensus 233 lh~g-----------~N~i~~lpae~~~~L-~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl- 297 (565)
T KOG0472|consen 233 LHVG-----------ENQIEMLPAEHLKHL-NSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL- 297 (565)
T ss_pred HHhc-----------ccHHHhhHHHHhccc-ccceeeecccccc-ccCchHHHHhhhhhhhcccCCc-cccCCcccccc-
Confidence 3221 1111111 112 5788899999887 7888888888999999998874 445544 4445
Q ss_pred CccEEEeccCccccccchhhhhC-CCCccceEec-------ccCCC---------CcCCCCCCCCCCccEEEEcCCCCCc
Q 036119 513 QLRSVVIEECDALESLPEAWMQN-SNSSLECLAI-------RSCNS---------LVSFPEVALPSQLRTIIIGGCHALE 575 (839)
Q Consensus 513 ~L~~L~l~~~~~l~~~~~~~~~~-~~~~L~~L~l-------~~~~~---------l~~~~~~~~~~~L~~L~l~~~~~l~ 575 (839)
.|+.|.+.+|+.- .+....... .-.-|++|.= +.-.. -..+|......+.+.|.+++- .+.
T Consensus 298 hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt 375 (565)
T KOG0472|consen 298 HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLT 375 (565)
T ss_pred eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccc
Confidence 8888888888732 222111111 1111222211 00000 001111122234555655554 355
Q ss_pred CCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccc
Q 036119 576 SLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADL 655 (839)
Q Consensus 576 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 655 (839)
.+|...+...-..-...++++.+. +..+|.... ....+.+.-+..++..+.+|..+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~-----------------------~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLV-----------------------ELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccch-HhhhhhhhH-----------------------HHHHHHHHHHhhcCccccchHHH
Confidence 566555543211123344444432 111111100 01222222223333345555555
Q ss_pred cCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCC-CCCCCCcce
Q 036119 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE-DGFPTNLQS 734 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~ 734 (839)
+.+++|..|++++| .+..+|..++.+..|+.|+++.| ....+|..+..+..|+.+-.++|++...-+. ...+.+|.+
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 55666666666555 34455555555555666666655 2344555444444444444444444322222 144455555
Q ss_pred EEecCCCCCCccccccCCCccccceEEEecC
Q 036119 735 LDVHDLKISKPLLEWGSNRFTSLRRFTIWGG 765 (839)
Q Consensus 735 L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 765 (839)
||+.+|.+....|. ..++++|++|.++||
T Consensus 510 LDL~nNdlq~IPp~--LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPI--LGNMTNLRHLELDGN 538 (565)
T ss_pred eccCCCchhhCChh--hccccceeEEEecCC
Confidence 55555555443332 245555555555554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=165.63 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=55.8
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccE
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLET 373 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~ 373 (839)
..-..|+++++. +..+|..+. .+|+.|++++|++. .+|.. .++|++|++++| +++ .+|...++|++
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~l--------p~~Lk~LdLs~N-~Lt-sLP~lp~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPAL--------PPELRTLEVSGN-QLT-SLPVLPPGLLE 266 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCCcCC-CCCCC--------CCCCcEEEecCC-ccC-cccCcccccce
Confidence 457789999998 889998876 48999999999985 46642 678999999996 777 67765556666
Q ss_pred EeecccC
Q 036119 374 LDITSCD 380 (839)
Q Consensus 374 L~l~~~~ 380 (839)
|++.+|.
T Consensus 267 L~Ls~N~ 273 (788)
T PRK15387 267 LSIFSNP 273 (788)
T ss_pred eeccCCc
Confidence 6665543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=162.84 Aligned_cols=91 Identities=34% Similarity=0.431 Sum_probs=48.8
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEec
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 545 (839)
+-..|+++++.+ ..+|..+. ++|+.|.+.+| .++.+|. .+++|++|++++|. ++.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCC-CcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceeec
Confidence 345666766655 35665543 36777777765 3444553 35666666666653 4444421 245666666
Q ss_pred ccCCCCcCCCCCCCCCCccEEEEcCC
Q 036119 546 RSCNSLVSFPEVALPSQLRTIIIGGC 571 (839)
Q Consensus 546 ~~~~~l~~~~~~~~~~~L~~L~l~~~ 571 (839)
.+|. +..+|. .+++|+.|++++|
T Consensus 270 s~N~-L~~Lp~--lp~~L~~L~Ls~N 292 (788)
T PRK15387 270 FSNP-LTHLPA--LPSGLCKLWIFGN 292 (788)
T ss_pred cCCc-hhhhhh--chhhcCEEECcCC
Confidence 6553 233332 2345555555555
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=148.21 Aligned_cols=244 Identities=21% Similarity=0.301 Sum_probs=151.8
Q ss_pred CccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCccccccee
Q 036119 538 SSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYL 617 (839)
Q Consensus 538 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 617 (839)
.+...|.++++ .++.+|.. .+++++.|++++| .+..+|.... ++|+.|++++|. ++.++. .++++|+.|
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N-~LtsLP~~l~-----~nL~~L~Ls~N~-LtsLP~--~l~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNN-ELKSLPENLQ-----GNIKTLYANSNQ-LTSIPA--TLPDTIQEM 246 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCC-CCCcCChhhc-----cCCCEEECCCCc-cccCCh--hhhccccEE
Confidence 45677888775 45566642 3568999999888 5667776442 478888888774 455543 345678888
Q ss_pred EeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccc
Q 036119 618 KIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK 697 (839)
Q Consensus 618 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 697 (839)
++++|... .+|..+. .+|+.|++++|++. .+|..+ .++|+.|++++|.+. .+|..+. ++|+.|++++|.. .
T Consensus 247 ~Ls~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~L-t 317 (754)
T PRK15370 247 ELSINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSL-T 317 (754)
T ss_pred ECcCCccC-cCChhHh-CCCCEEECcCCccC-cccccc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcc-c
Confidence 88887543 4544332 57888888877765 456544 257888888887544 4554332 3788888887754 3
Q ss_pred cccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC-CC
Q 036119 698 ALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP-FP 776 (839)
Q Consensus 698 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~ 776 (839)
.+|..+ .++|+.|++++|.+.. +|. ..+++|+.|++++|++.. +|.. -.++|+.|++++| .+..+|. ++
T Consensus 318 ~LP~~l--~~sL~~L~Ls~N~Lt~-LP~-~l~~sL~~L~Ls~N~L~~-LP~~---lp~~L~~LdLs~N--~Lt~LP~~l~ 387 (754)
T PRK15370 318 ALPETL--PPGLKTLEAGENALTS-LPA-SLPPELQVLDVSKNQITV-LPET---LPPTITTLDVSRN--ALTNLPENLP 387 (754)
T ss_pred cCCccc--cccceeccccCCcccc-CCh-hhcCcccEEECCCCCCCc-CChh---hcCCcCEEECCCC--cCCCCCHhHH
Confidence 455543 2578888888887653 553 234678888888887663 3321 1246666777663 2334443 44
Q ss_pred cccceeeecCCCCCCccccCC----CCCCccCeeeccCCC
Q 036119 777 ASLTNLWISDMPDLESISSIG----ENLTSLKTLRLSDCP 812 (839)
Q Consensus 777 ~~L~~L~l~~~~~l~~~~~~~----~~l~~L~~L~l~~c~ 812 (839)
.+|+.|++++|... .+|..+ ..++++..|++.+|+
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 56667777766443 444332 334566666666664
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-14 Score=141.95 Aligned_cols=101 Identities=25% Similarity=0.248 Sum_probs=67.2
Q ss_pred eeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc----CCCC
Q 036119 296 LRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR----RLLL 370 (839)
Q Consensus 296 L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~----~l~~ 370 (839)
-..++|..|. |..+| .+|+.+++||.||||+|.|..+-|+++.- +.+|-.|-+.++++++ .+|+ ++..
T Consensus 69 tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-----L~~l~~Lvlyg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 69 TVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG-----LASLLSLVLYGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred ceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhh-----hHhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence 4556677777 77776 56777777777777777776666666555 7777777777666776 6764 4445
Q ss_pred ccEEeecccC---cccccCCCCCCccEEEeccccce
Q 036119 371 LETLDITSCD---QLLVTIQCLPALSELQIDGCKRV 403 (839)
Q Consensus 371 L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~~ 403 (839)
|+-|.+..+. .....+..+++|..|++..|..-
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 5555554443 23466778888888888777543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-14 Score=139.16 Aligned_cols=360 Identities=17% Similarity=0.107 Sum_probs=208.6
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+|+....++|..|.+..--+..|+.+++|+.|+|++|.+-..-|. +.++++|.+|.+.+++.++.++...+ .++..|+
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHHH
Confidence 557888889988888544445788899999999988754333333 33578888888888777888876544 4456666
Q ss_pred eEecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCccc------------ccCCC
Q 036119 542 CLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLAL------------LSRNG 608 (839)
Q Consensus 542 ~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~------------~~~~~ 608 (839)
.|.+..|...-... .+..++++..|.+.++ .++.++...+... .+++.+.+..++.+.. .+...
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l--~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGL--AAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccch--hccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 66665543221111 1233345555555554 2333433332222 2344444444331110 00000
Q ss_pred C----------------------ccccccee---EeccCCCchhhhh--hcCCCCcceeeecccccccCccccccCCCCC
Q 036119 609 N----------------------LPQSLKYL---KIEDCSKLESLAE--RLDNTSLEEISISVLENLKSLPADLHNLHHL 661 (839)
Q Consensus 609 ~----------------------~~~~L~~L---~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 661 (839)
. +..+++.+ ....|......|. .-..++|++|++++|+++..-+.+|..+..+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 0 00011111 0111111111111 1123889999999999988888888899999
Q ss_pred CeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCc-----------------cCC
Q 036119 662 QKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVV-----------------SFP 724 (839)
Q Consensus 662 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~-----------------~~~ 724 (839)
++|.+..|++...-...+..+..|++|++++|++....|..|..+.+|.+|.+-.|+..- ..|
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 999999987654444567778899999999998888788888999999999998876642 223
Q ss_pred CCCCCCCcceEEecCCCCCCc---ccccc--------CCCccccceEE-EecCCCCCcCCCC-CCcccceeeecCCCCCC
Q 036119 725 EDGFPTNLQSLDVHDLKISKP---LLEWG--------SNRFTSLRRFT-IWGGCPDLVSPPP-FPASLTNLWISDMPDLE 791 (839)
Q Consensus 725 ~~~~~~~L~~L~l~~~~~~~~---~~~~~--------~~~l~~L~~l~-l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~ 791 (839)
..+.+..++.+.+++..+... .++.. -...+.+.+.. .+ -..+..+|. +|....+|++.+|.+ +
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcS--nk~lk~lp~~iP~d~telyl~gn~~-~ 457 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCS--NKLLKLLPRGIPVDVTELYLDGNAI-T 457 (498)
T ss_pred CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhc--ccchhhcCCCCCchhHHHhcccchh-c
Confidence 446677888888887765421 11100 00000000000 00 011223333 677788899999855 5
Q ss_pred ccccCCCCCCccCeeeccCCCCccccCCCCCC--cccceeeecC
Q 036119 792 SISSIGENLTSLKTLRLSDCPKLKYFSEQGLP--KSLLQLHIYA 833 (839)
Q Consensus 792 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~i~~ 833 (839)
.+|.. .+.+| .++++++ .+..+....++ +.|.+|-+++
T Consensus 458 ~vp~~--~~~~l-~~dls~n-~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 458 SVPDE--LLRSL-LLDLSNN-RISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred ccCHH--HHhhh-hcccccC-ceehhhcccccchhhhheeEEec
Confidence 56655 56778 8899987 66666554444 3455555543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=143.69 Aligned_cols=227 Identities=24% Similarity=0.334 Sum_probs=120.4
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccce
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLEC 542 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 542 (839)
+|++|+.|++++|.+ ..+|..+. ++|+.|++++|. ++.+|. ..+++|+.|++++|. +..+|..+. .+|+.
T Consensus 197 Ip~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~-LtsLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~----s~L~~ 266 (754)
T PRK15370 197 IPEQITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQ-LTSIPA-TLPDTIQEMELSINR-ITELPERLP----SALQS 266 (754)
T ss_pred cccCCcEEEecCCCC-CcCChhhc--cCCCEEECCCCc-cccCCh-hhhccccEEECcCCc-cCcCChhHh----CCCCE
Confidence 345666777766655 34554332 466666666653 344443 223456666666654 334443321 34555
Q ss_pred EecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccC
Q 036119 543 LAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC 622 (839)
Q Consensus 543 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~ 622 (839)
|++++|. +..+|.. .+++|+.|++++| .+..+|. .++++|+.|++++|
T Consensus 267 L~Ls~N~-L~~LP~~-l~~sL~~L~Ls~N-~Lt~LP~-----------------------------~lp~sL~~L~Ls~N 314 (754)
T PRK15370 267 LDLFHNK-ISCLPEN-LPEELRYLSVYDN-SIRTLPA-----------------------------HLPSGITHLNVQSN 314 (754)
T ss_pred EECcCCc-cCccccc-cCCCCcEEECCCC-ccccCcc-----------------------------cchhhHHHHHhcCC
Confidence 5555432 2334321 2234555555554 2333322 12234555555554
Q ss_pred CCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccccc
Q 036119 623 SKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNC 702 (839)
Q Consensus 623 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~ 702 (839)
... .+|... .++|+.|++++|.+.+ +|..+ .++|+.|++++|.+. .+|..+. ++|+.|++++|+ +..+|..
T Consensus 315 ~Lt-~LP~~l-~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~-Lt~LP~~ 385 (754)
T PRK15370 315 SLT-ALPETL-PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNA-LTNLPEN 385 (754)
T ss_pred ccc-cCCccc-cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCc-CCCCCHh
Confidence 322 222211 2456666666665543 44443 267778888777544 4555432 478888888775 3456655
Q ss_pred CcccccccccccccccCCccCCCC-----CCCCCcceEEecCCCCC
Q 036119 703 MHNLTSLLNLKISECPSVVSFPED-----GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 703 l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~ 743 (839)
+. ++|+.|++++|++. .+|.. ...+++..|++.+|++.
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 43 36777888877765 44432 23466777888887765
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-13 Score=114.83 Aligned_cols=164 Identities=18% Similarity=0.196 Sum_probs=100.5
Q ss_pred hhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccc
Q 036119 627 SLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNL 706 (839)
Q Consensus 627 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l 706 (839)
.++..+.....+.|.+++|+++. +|..+..+.+|+.|++++|++ +.+|..+..+++|+.|++.-| .+..+|.+|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchh-hhhcCccccCCC
Confidence 33444444566666677776643 444666777777777777643 456666677777777777665 355677777777
Q ss_pred ccccccccccccCCc-cCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeee
Q 036119 707 TSLLNLKISECPSVV-SFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWI 784 (839)
Q Consensus 707 ~~L~~L~l~~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 784 (839)
|.|+.|++.+|...+ .+|.. ..++.|+.|++++|.+.-..++. .. +++|+.|.+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv--g~----------------------lt~lqil~l 157 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV--GK----------------------LTNLQILSL 157 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh--hh----------------------hcceeEEee
Confidence 777777777666543 33433 44566777777777654322221 22 234555555
Q ss_pred cCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 785 SDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 785 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
.+|.. -++|..++.++.|++|.+.+| +++.+|+
T Consensus 158 rdndl-l~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 158 RDNDL-LSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred ccCch-hhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 55633 356667777777777777776 6666655
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-13 Score=118.06 Aligned_cols=110 Identities=27% Similarity=0.382 Sum_probs=86.4
Q ss_pred HHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP 365 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp 365 (839)
.+..+..+.+|++|++++|+ +.++|.+++.+++||+|+++-|.+ ..+|.+++. ++-|+.||+++|+--...+|
T Consensus 48 vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl-~~lprgfgs-----~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL-NILPRGFGS-----FPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred cCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh-hcCccccCC-----CchhhhhhccccccccccCC
Confidence 33447888999999999999 999999999999999999999887 778999888 99999999999754445677
Q ss_pred cCC---CCccEEeecccC--cccccCCCCCCccEEEeccccc
Q 036119 366 RRL---LLLETLDITSCD--QLLVTIQCLPALSELQIDGCKR 402 (839)
Q Consensus 366 ~~l---~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~ 402 (839)
..+ ..|+-|.+.+++ -+|..++++++|+.|.+..|..
T Consensus 121 gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence 643 345556676665 5677788888887777776653
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-12 Score=133.98 Aligned_cols=58 Identities=22% Similarity=0.098 Sum_probs=36.2
Q ss_pred cccceeeecCCCCC----CccccCCCCCCccCeeeccCCCCccccCCC------CCC-cccceeeecCCC
Q 036119 777 ASLTNLWISDMPDL----ESISSIGENLTSLKTLRLSDCPKLKYFSEQ------GLP-KSLLQLHIYACP 835 (839)
Q Consensus 777 ~~L~~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~------~~~-~sL~~L~i~~c~ 835 (839)
+.|+.|++++|... ..+...+..+++|+.+++++| .+..-+.. ..+ +.|+.|+|.+.|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 57888888888654 123334455688999999988 44432211 112 467888887765
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-11 Score=128.97 Aligned_cols=109 Identities=18% Similarity=0.101 Sum_probs=53.0
Q ss_pred CCcceeeeccccccc----CccccccCCCCCCeEEecCCCCCcc----cCCCCCCCCCcceEecccccccccccccC---
Q 036119 635 TSLEEISISVLENLK----SLPADLHNLHHLQKIWIFGCPNLES----FPEEGLPSTKLTELTIYDCENLKALPNCM--- 703 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~lp~~l--- 703 (839)
++|+.|++++|.+.+ .++..+..+++|++|++++|..... ++..+..+++|++|++++|+........+
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 455555555555442 1222333445666666666654321 22233445566666666665432111111
Q ss_pred --cccccccccccccccCCcc----CCC-CCCCCCcceEEecCCCCC
Q 036119 704 --HNLTSLLNLKISECPSVVS----FPE-DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 704 --~~l~~L~~L~l~~~~~~~~----~~~-~~~~~~L~~L~l~~~~~~ 743 (839)
...+.|++|++++|.+... +.. ...+++|+++++++|.+.
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1235666666666655311 000 122356677777777665
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-09 Score=120.77 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=25.0
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhh
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLA 629 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 629 (839)
++..+.+.+|........ ..++++|+.|.+..|..++.+.
T Consensus 748 ~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred HHHHHHhhccccccccch-hhccCcccEEEEecccccccCC
Confidence 455555666665555443 3456778888888777766653
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.2e-09 Score=105.33 Aligned_cols=105 Identities=12% Similarity=-0.035 Sum_probs=43.6
Q ss_pred CCcceeeecccccccCcc--ccccCCCCCCeEEecCCCCCcc--cCCCCCCCCCcceEecccccccccccc-cCcccccc
Q 036119 635 TSLEEISISVLENLKSLP--ADLHNLHHLQKIWIFGCPNLES--FPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSL 709 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L 709 (839)
.+|+.+.|.++... .++ .....|++++.|++++|-...- +.....++|+|+.|+++.|....-... .-..++.|
T Consensus 121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 34555555544431 111 2334555555555555522211 112233445555555555543221111 11234455
Q ss_pred cccccccccCCccCC--CCCCCCCcceEEecCC
Q 036119 710 LNLKISECPSVVSFP--EDGFPTNLQSLDVHDL 740 (839)
Q Consensus 710 ~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~ 740 (839)
+.|.+++|.+...-- ....+|+|+.|++..|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 555555554431000 0023455555555555
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-09 Score=109.33 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=91.8
Q ss_pred CceEEEeccCCCCCcc--ccccCCCCCccEEeecCCCCCcccCC---CCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 466 RLQFLELSCCEGLTRL--PQALLTLSSLTEMRIHDCASLVSFPQ---AALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
.|+.|.+++|.....- -.....+|++++|.+.+|..++...- ...+++|+.+.+..|..++.........++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5677777776553322 22345788999999999876654321 235788999999998888877666666788999
Q ss_pred ceEecccCCCCcCCC---CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccC--CCCcccccc
Q 036119 541 ECLAIRSCNSLVSFP---EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSR--NGNLPQSLK 615 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~L~ 615 (839)
+++.+++|+.+..-. -......++.+...+|...+.=.........+ -+.++++..|..++.... .......|+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~-~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL-EILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh-HhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999998765411 11223345555555665433111111121111 244445556655443321 111233456
Q ss_pred eeEeccCCCch
Q 036119 616 YLKIEDCSKLE 626 (839)
Q Consensus 616 ~L~l~~~~~l~ 626 (839)
.|..++|..+.
T Consensus 298 ~l~~s~~t~~~ 308 (483)
T KOG4341|consen 298 VLCYSSCTDIT 308 (483)
T ss_pred hhcccCCCCCc
Confidence 66666665543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-08 Score=102.68 Aligned_cols=35 Identities=29% Similarity=0.195 Sum_probs=20.9
Q ss_pred CcccceeeecCCCC--CCccccCCCCCCccCeeeccCC
Q 036119 776 PASLTNLWISDMPD--LESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 776 ~~~L~~L~l~~~~~--l~~~~~~~~~l~~L~~L~l~~c 811 (839)
.++|+.|+++.|+. ..++- .+..+++|+.|.+..+
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITLN 336 (505)
T ss_pred cccceeeecccCccccccccc-hhhccchhhhhhcccc
Confidence 45788888888865 22222 2345667777776654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=95.62 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=30.5
Q ss_pred CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCC-ccccCCCCCCcccceeeecCCCC
Q 036119 775 FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPK-LKYFSEQGLPKSLLQLHIYACPL 836 (839)
Q Consensus 775 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~sL~~L~i~~c~~ 836 (839)
+|++|+.|++++|.... +|..+- .+|+.|.++.+.. ...++...+|+++ .|++.+|-.
T Consensus 154 LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred cCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 45667777777665442 232221 4666666665421 1134444566666 666666643
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-09 Score=109.46 Aligned_cols=143 Identities=13% Similarity=0.192 Sum_probs=66.7
Q ss_pred cCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccc--cccCCCCCccEEeecCCCCCccc-
Q 036119 429 LPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLP--QALLTLSSLTEMRIHDCASLVSF- 505 (839)
Q Consensus 429 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~l- 505 (839)
+...++++++|.+.+|..++.... ..+...-++|+.|++..|...+... .-...+++|++|++++|+.+..-
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~-----~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSL-----LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHH-----HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 345667777777777765443221 1111111466666666655433221 12235677777777777555431
Q ss_pred --CCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCC---CCCCCCccEEEEcCCCCCcC
Q 036119 506 --PQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE---VALPSQLRTIIIGGCHALES 576 (839)
Q Consensus 506 --~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~ 576 (839)
+...+...++.+...+|...+.-........++.+.++++..|..++.... -.....|+.+..++|..+.+
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 111223445555555554433222222223344455555555544433221 12233455555555554443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-08 Score=95.19 Aligned_cols=129 Identities=23% Similarity=0.192 Sum_probs=82.1
Q ss_pred cCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceE
Q 036119 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSL 735 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 735 (839)
..+..|+++++++|.+. .+.+...-.|.++.|++++|.+.. + ..+..+++|..|++++|.......-...+.+.+.|
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34567788888887543 455555556778888888875443 2 23677778888888877665433222556677777
Q ss_pred EecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCC--ccccCCCCCCccCeeeccCCCC
Q 036119 736 DVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLE--SISSIGENLTSLKTLRLSDCPK 813 (839)
Q Consensus 736 ~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~ 813 (839)
.+++|.+.. +++|..| =+|..||+++|.+-. .+ ..++++|+|+++.+.+||-
T Consensus 358 ~La~N~iE~---------LSGL~KL----------------YSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIET---------LSGLRKL----------------YSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhh---------hhhhHhh----------------hhheeccccccchhhHHHh-cccccccHHHHHhhcCCCc
Confidence 777776532 2222222 257777777775422 22 2568899999999998864
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.4e-07 Score=104.16 Aligned_cols=108 Identities=20% Similarity=0.174 Sum_probs=90.2
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+..+.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888899999999999998888888888888999999999998888889889999999999999
Q ss_pred cccCCccCCCC--CCCCCcceEEecCCCCC
Q 036119 716 ECPSVVSFPED--GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 716 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~~ 743 (839)
+|.+...+|.. ..+.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 99888788764 23356678888888654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=90.88 Aligned_cols=133 Identities=27% Similarity=0.497 Sum_probs=79.1
Q ss_pred CCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccce
Q 036119 537 NSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKY 616 (839)
Q Consensus 537 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 616 (839)
+.++..|++++| .++.+| ..+++|+.|.+++|..+..+|.. +|.+|+.|.+.+|..+.. +|++|+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~s------LP~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISG------LPESVRS 116 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCcccccc------cccccce
Confidence 477889999988 677777 46678999999998888777753 346788888888876653 3456778
Q ss_pred eEeccCC--CchhhhhhcCCCCcceeeecccccc--cCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 617 LKIEDCS--KLESLAERLDNTSLEEISISVLENL--KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 617 L~l~~~~--~l~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
|++..+. .+..+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|+.|.++.
T Consensus 117 L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcccccCc-----chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 8776432 233333 24556655432211 111100 1245666666666543 2332222 3666666655
Q ss_pred c
Q 036119 693 C 693 (839)
Q Consensus 693 ~ 693 (839)
|
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-07 Score=85.23 Aligned_cols=101 Identities=27% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCCceeEEEeCCCccccccccccc-CcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC----c
Q 036119 292 HLPRLRVFSLCGYRNIFNLPNEIG-NLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP----R 366 (839)
Q Consensus 292 ~l~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp----~ 366 (839)
+..++|.|+|++|. +..+. .++ .+.+|+.|++++|.+.. ++ ++.. +++|++|++++| .++ .++ .
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~-----L~~L~~L~L~~N-~I~-~i~~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQITK-LE-GLPG-----LPRLKTLDLSNN-RIS-SISEGLDK 85 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T---------TT--EEE--SS-----S-CHHHHH
T ss_pred cccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCcc-cc-CccC-----hhhhhhcccCCC-CCC-ccccchHH
Confidence 33455666666666 55553 344 35666666666666532 22 2222 666666666663 444 332 1
Q ss_pred CCCCccEEeecccC----cccccCCCCCCccEEEeccccce
Q 036119 367 RLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRV 403 (839)
Q Consensus 367 ~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~ 403 (839)
.+++|++|+++++. .-...+..+++|++|++.+|+..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 35666666666554 12256678899999999998754
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.4e-07 Score=66.75 Aligned_cols=58 Identities=29% Similarity=0.509 Sum_probs=50.7
Q ss_pred CceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCc
Q 036119 294 PRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNC 357 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~ 357 (839)
++|++|++++|. +..+| ..|..+++|++|++++|.+...-|..+.. +++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~-----l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN-----LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTT-----STTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC-----CCCCCEEeCcCC
Confidence 579999999998 88888 57889999999999999997665666666 999999999997
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.6e-09 Score=99.59 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=115.9
Q ss_pred CCcceeeecccccccC-ccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc--cccCcccccccc
Q 036119 635 TSLEEISISVLENLKS-LPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL--PNCMHNLTSLLN 711 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--p~~l~~l~~L~~ 711 (839)
+.|+.++++...++.. +-..+..+.+|+.|.+.++...+.+...+..-.+|+.|+++.|.-...- .-.+.+|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5688888887666532 2223457888888888888777666666666678999999888655432 224577888888
Q ss_pred cccccccCCccCCCC---CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCC
Q 036119 712 LKISECPSVVSFPED---GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMP 788 (839)
Q Consensus 712 L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 788 (839)
|+++.|......-.. ..-++|+.|+++|+.-.- +.. ++..| ..-.++|..||+|+|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~s---h~~tL------------~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKS---HLSTL------------VRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhh---HHHHH------------HHhCCceeeecccccc
Confidence 888888765443221 345678888888875320 000 11111 0112478889999887
Q ss_pred CCCc-cccCCCCCCccCeeeccCCCCccc--cCCCCCCcccceeeecCCC
Q 036119 789 DLES-ISSIGENLTSLKTLRLSDCPKLKY--FSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 789 ~l~~-~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~sL~~L~i~~c~ 835 (839)
.++. ....+..|+.|++|.++.|-.+-. +-...-.|+|.+|++.||-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 6654 222336789999999999954421 1011123699999999884
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-08 Score=103.72 Aligned_cols=148 Identities=21% Similarity=0.211 Sum_probs=93.3
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
..|+.+.++.|.+ ..+|..+.++..|.+|+++.|++. .+|..+..+ -|+.|.+++| +++.+|+.++.++.|..|+.
T Consensus 98 ~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 98 VSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC-ccccCCcccccchhHHHhhh
Confidence 4556666666555 345666777777777777777543 455544443 3777777765 46667777777777777777
Q ss_pred ccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccc
Q 036119 715 SECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS 794 (839)
Q Consensus 715 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 794 (839)
+.|.+....+..+.+.+|+.|.+..|++..-.++. .. -.|..||+|.| ....+|
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El-----~~--------------------LpLi~lDfScN-kis~iP 227 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL-----CS--------------------LPLIRLDFSCN-KISYLP 227 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH-----hC--------------------CceeeeecccC-ceeecc
Confidence 77777654445566777777777777665432221 00 03666777666 445667
Q ss_pred cCCCCCCccCeeeccCCC
Q 036119 795 SIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 795 ~~~~~l~~L~~L~l~~c~ 812 (839)
..|.++..|++|.|.+||
T Consensus 228 v~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhhhheeeeeccCC
Confidence 677777777777777664
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-07 Score=86.89 Aligned_cols=82 Identities=20% Similarity=0.139 Sum_probs=20.6
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCC-CCCCCcceEecccccccc--cccccCcccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEG-LPSTKLTELTIYDCENLK--ALPNCMHNLTSLLN 711 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~ 711 (839)
.+|+.|++++|.+... + ++..+++|++|++++|.+.. +...+ ..+++|++|.+++|++.. .+ ..+..+++|+.
T Consensus 42 ~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--E
T ss_pred cCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcce
Confidence 3444444444444321 1 33344555555555554332 21111 123455555555443211 11 12334445555
Q ss_pred cccccccCC
Q 036119 712 LKISECPSV 720 (839)
Q Consensus 712 L~l~~~~~~ 720 (839)
|++.+||..
T Consensus 118 L~L~~NPv~ 126 (175)
T PF14580_consen 118 LSLEGNPVC 126 (175)
T ss_dssp EE-TT-GGG
T ss_pred eeccCCccc
Confidence 555555443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.6e-08 Score=103.59 Aligned_cols=152 Identities=24% Similarity=0.329 Sum_probs=110.5
Q ss_pred HHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP 365 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp 365 (839)
+|..++.+..|..|.|..|. +..+|..+++|..|.||||+.|++ ..+|..+.. --|+.|.+++| +++ .+|
T Consensus 90 lp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~------lpLkvli~sNN-kl~-~lp 159 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCD------LPLKVLIVSNN-KLT-SLP 159 (722)
T ss_pred CchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCChhhhc------CcceeEEEecC-ccc-cCC
Confidence 34446666777888888888 888888888888888888888887 567776553 34788878874 665 677
Q ss_pred cC---CCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCcee
Q 036119 366 RR---LLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQ 440 (839)
Q Consensus 366 ~~---l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~ 440 (839)
.. ...|..|+.+.|. .+|..++.+.+|+.|.+..|....++. .+.
T Consensus 160 ~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~------------------------El~------ 209 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE------------------------ELC------ 209 (722)
T ss_pred cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH------------------------HHh------
Confidence 53 3456666777666 677888888888888888776433111 111
Q ss_pred cccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCC
Q 036119 441 ISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCAS 501 (839)
Q Consensus 441 l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 501 (839)
. -.|.+||++.|++ ..+|..|.+|..|++|-|.+|+.
T Consensus 210 ---------------------~--LpLi~lDfScNki-s~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 210 ---------------------S--LPLIRLDFSCNKI-SYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ---------------------C--CceeeeecccCce-eecchhhhhhhhheeeeeccCCC
Confidence 1 1588999998887 68999999999999999988854
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-07 Score=89.55 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=44.9
Q ss_pred CCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEe
Q 036119 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLA 544 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 544 (839)
++|+.|++++|.. ..+-.|-.++-+.++|.+.+| .+.++.....+-+|..|++++|. ++.+...-..+.+|.|+.+.
T Consensus 329 ~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchh-HhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHh
Confidence 3566666666654 344445555666666666665 34444444555666666666654 22222222224556666666
Q ss_pred cccCCCC
Q 036119 545 IRSCNSL 551 (839)
Q Consensus 545 l~~~~~l 551 (839)
+.+||.-
T Consensus 406 L~~NPl~ 412 (490)
T KOG1259|consen 406 LTGNPLA 412 (490)
T ss_pred hcCCCcc
Confidence 6665543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.2e-07 Score=96.24 Aligned_cols=191 Identities=21% Similarity=0.206 Sum_probs=117.5
Q ss_pred eeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCC-CCCeEEecCCCCCcccCCCCCCCCCcceEeccccc
Q 036119 616 YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLH-HLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694 (839)
Q Consensus 616 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 694 (839)
.+....+............+.++.+++.++.+.. ++.....+. +|+.|++++|... .+|.....+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4666665544444444445778888888887754 443444553 8888888888543 555556778888888888885
Q ss_pred ccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCC-cCC
Q 036119 695 NLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDL-VSP 772 (839)
Q Consensus 695 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~ 772 (839)
+..+|......++|+.|++++|.+. .+|.. ..+..|++|.+++|+...... ....+..+..+.+.++-... ...
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccch
Confidence 5556665557888888888888775 45544 456668888888885433222 12344444444433321110 122
Q ss_pred CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCc
Q 036119 773 PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKL 814 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l 814 (839)
...+++++.|++++|.. ..++. +..+.+++.|+++++...
T Consensus 251 ~~~l~~l~~L~~s~n~i-~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 251 IGNLSNLETLDLSNNQI-SSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hccccccceeccccccc-ccccc-ccccCccCEEeccCcccc
Confidence 22445677777777743 34443 566777777777776433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-06 Score=95.90 Aligned_cols=103 Identities=34% Similarity=0.477 Sum_probs=73.9
Q ss_pred hcCCCceeEEEeCCCcccccccccccCcC-cCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc--
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLK-HLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR-- 366 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~-- 366 (839)
+..+..++.|++.++. +..+|...+.+. +|+.|++++|.+ ..+|..+.. +++|+.|++++| .+. .+|.
T Consensus 112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~-----l~~L~~L~l~~N-~l~-~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRN-----LPNLKNLDLSFN-DLS-DLPKLL 182 (394)
T ss_pred hhcccceeEEecCCcc-cccCccccccchhhcccccccccch-hhhhhhhhc-----cccccccccCCc-hhh-hhhhhh
Confidence 4455789999999998 889988888885 999999999988 445544455 899999999986 565 5654
Q ss_pred -CCCCccEEeecccC--cccccCCCCCCccEEEecccc
Q 036119 367 -RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCK 401 (839)
Q Consensus 367 -~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~ 401 (839)
...+|+.|+++++. .+|..++.+.+|++|.+.+|.
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 55666777776665 445544455556666666653
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=64.66 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=25.2
Q ss_pred CCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccccccc
Q 036119 660 HLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECP 718 (839)
Q Consensus 660 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 718 (839)
+|++|++++|.+....+..+..+++|++|++++|.....-|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444443332222233444455555555443332223344444444444444443
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=97.96 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=80.6
Q ss_pred CCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEec
Q 036119 660 HLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVH 738 (839)
Q Consensus 660 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~ 738 (839)
.++.|+|++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+...+|.. +.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999888888988888999999999999988899999999999999999999998888865 778999999999
Q ss_pred CCCCCCccccc
Q 036119 739 DLKISKPLLEW 749 (839)
Q Consensus 739 ~~~~~~~~~~~ 749 (839)
+|.+.+.+|..
T Consensus 499 ~N~l~g~iP~~ 509 (623)
T PLN03150 499 GNSLSGRVPAA 509 (623)
T ss_pred CCcccccCChH
Confidence 99999887764
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-07 Score=90.47 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=32.6
Q ss_pred ceeEEEeCCCccccc--ccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 295 RLRVFSLCGYRNIFN--LPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
.|++|||++.. ++. +-.-+..+.+|+.|.+.++.+.+.+...+.. -.+|+.|+++.|++++
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-----N~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-----NSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-----cccceeeccccccccc
Confidence 46666666654 221 2223345556666666666654444444443 5566666666665554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.83 E-value=2e-05 Score=53.92 Aligned_cols=38 Identities=34% Similarity=0.513 Sum_probs=32.2
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccc
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEE 332 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~ 332 (839)
++|++|++++|+ +..+|..+++|++|++|++++|.+..
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCC
Confidence 478999999999 88999889999999999999999853
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=1.4e-05 Score=86.93 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=82.9
Q ss_pred HHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR- 366 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~- 366 (839)
..+..+.+|.+|++.+|. +..+...+..+++|++|++++|.|....+ +..++.|+.|++.+| .+. .++.
T Consensus 89 ~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-------l~~l~~L~~L~l~~N-~i~-~~~~~ 158 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLEG-------LSTLTLLKELNLSGN-LIS-DISGL 158 (414)
T ss_pred cccccccceeeeeccccc-hhhcccchhhhhcchheeccccccccccc-------hhhccchhhheeccC-cch-hccCC
Confidence 347788999999999999 88887668889999999999999855432 223778999999996 555 4553
Q ss_pred -CCCCccEEeecccCccccc---CCCCCCccEEEeccccceeecC
Q 036119 367 -RLLLLETLDITSCDQLLVT---IQCLPALSELQIDGCKRVVFSS 407 (839)
Q Consensus 367 -~l~~L~~L~l~~~~~l~~~---l~~l~~L~~L~l~~~~~~~~~~ 407 (839)
.+.+|+.+++.++...... +..+.+++.+.+.+|....+..
T Consensus 159 ~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc
Confidence 4778888888888733322 4788888888888887655433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.7e-06 Score=82.17 Aligned_cols=180 Identities=15% Similarity=0.021 Sum_probs=91.8
Q ss_pred ccceeEeccCCCchh----hhhhc-CCCCcceeeecccccccCcc-------------ccccCCCCCCeEEecCCCCCcc
Q 036119 613 SLKYLKIEDCSKLES----LAERL-DNTSLEEISISVLENLKSLP-------------ADLHNLHHLQKIWIFGCPNLES 674 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~----~~~~~-~~~~L~~L~l~~~~~~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~ 674 (839)
.|+.|++++|-.-.. +.+.+ +.++|++|.+.+|.+-...- .-...-+.|+.+..+.|... .
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-N 171 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-c
Confidence 577777777642221 11111 23667777777765532111 11234556666666666432 2
Q ss_pred cC-----CCCCCCCCcceEecccccccc----cccccCcccccccccccccccCCccCCCC-----CCCCCcceEEecCC
Q 036119 675 FP-----EEGLPSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISECPSVVSFPED-----GFPTNLQSLDVHDL 740 (839)
Q Consensus 675 ~~-----~~~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~ 740 (839)
.+ ..+...+.|+.+.++.|.+.. .+...+..++.|+.|+|.+|-+....... ..+++|++|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 21 223344566666666664321 22334566667777777766554322110 23456666777666
Q ss_pred CCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCc----cccCCCCCCccCeeeccCC
Q 036119 741 KISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLES----ISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 741 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~c 811 (839)
.+.........+ .+....++|++|.+.+|..... +...+...+.|..|+|++|
T Consensus 252 ll~~~Ga~a~~~------------------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 252 LLENEGAIAFVD------------------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccccHHHHHH------------------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 655221100000 0111234677777777765442 2333455788888888888
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=1.6e-05 Score=78.48 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=78.2
Q ss_pred HHHHHHHhcCCCceeEEEeCCCccccccc----ccccCcCcCcEeEecCccccccccCCC---------CCCccccCCCc
Q 036119 283 WSVLQMLLNHLPRLRVFSLCGYRNIFNLP----NEIGNLKHLRCLNLSRTKWEEWIPCGA---------GQEVDEVFPKL 349 (839)
Q Consensus 283 ~~~~~~~~~~l~~L~~L~L~~~~~~~~lp----~~i~~L~~L~~L~L~~~~~~~~~p~~~---------~~~~~~~l~~L 349 (839)
...+...+...++|++|+||.|-+-..-+ +-+.+...|++|.|.+|.+ +..-.+. .......-++|
T Consensus 81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 34456667788899999999998433333 3456678999999999986 2211111 11223346789
Q ss_pred cEEeccCccccccCCC--------cCCCCccEEeecccCccc-------ccCCCCCCccEEEeccccc
Q 036119 350 RTLSLDNCCKLQGTLP--------RRLLLLETLDITSCDQLL-------VTIQCLPALSELQIDGCKR 402 (839)
Q Consensus 350 ~~L~L~~~~~l~~~lp--------~~l~~L~~L~l~~~~~l~-------~~l~~l~~L~~L~l~~~~~ 402 (839)
+++....| .+. .-+ ...+.|+.+.+..+.-.+ ..+..+++|++|++..|..
T Consensus 160 rv~i~~rN-rle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 160 RVFICGRN-RLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred EEEEeecc-ccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 99988875 443 333 245688888888776333 4567899999999998853
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=3.2e-05 Score=74.49 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=24.3
Q ss_pred cCCCceeEEEeCCCccccc---ccccccCcCcCcEeEecCccc
Q 036119 291 NHLPRLRVFSLCGYRNIFN---LPNEIGNLKHLRCLNLSRTKW 330 (839)
Q Consensus 291 ~~l~~L~~L~L~~~~~~~~---lp~~i~~L~~L~~L~L~~~~~ 330 (839)
...+.++.|||.+|. +.. +-.-+.+|++|++|+++.|.+
T Consensus 68 ~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred HHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcC
Confidence 345667777777776 443 223345677777777777765
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.41 E-value=3.2e-05 Score=84.28 Aligned_cols=32 Identities=34% Similarity=0.289 Sum_probs=14.8
Q ss_pred cceeeecCCCCCCccccCCCCCCccCeeeccCC
Q 036119 779 LTNLWISDMPDLESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 779 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 811 (839)
|+.+++++|+.... +..+..+..+..|++.++
T Consensus 234 L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 234 LRELYLSGNRISRS-PEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHHhcccCccccc-cccccccccccccchhhc
Confidence 55555555544322 123334455555555544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=9.9e-06 Score=87.27 Aligned_cols=103 Identities=26% Similarity=0.204 Sum_probs=55.3
Q ss_pred CCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC-CCCCcccceeeecCCCCCCccccCCCCCCccCee
Q 036119 728 FPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP-PPFPASLTNLWISDMPDLESISSIGENLTSLKTL 806 (839)
Q Consensus 728 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 806 (839)
.++.|+.|++++|++.... ...+++.|++|+++.||.....- ...-..|+.|.+++|...+ +- .+.++.+|+.|
T Consensus 185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~-gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LR-GIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hh-hHHhhhhhhcc
Confidence 3445555555555544322 23445555555555444332211 1111258888888886543 22 45678888888
Q ss_pred eccCCCCccccCC---CCCCcccceeeecCCCC
Q 036119 807 RLSDCPKLKYFSE---QGLPKSLLQLHIYACPL 836 (839)
Q Consensus 807 ~l~~c~~l~~l~~---~~~~~sL~~L~i~~c~~ 836 (839)
+++.| -|....+ .....+|+.|++.|+|.
T Consensus 260 DlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88877 4444332 12224678888888763
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=79.99 Aligned_cols=193 Identities=17% Similarity=0.211 Sum_probs=106.8
Q ss_pred CCcEEEEEeccCCCChhhHhhhhccc-CCCCCCCEEEEEecChHHH--HHhC-CCCeEeCC----CCCcccccCcCC---
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPF-GAGAAGSKIVVTTRNLVVA--ERMG-ADPVYQLK----ELSDDDCLDFTR--- 76 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~-~~~~~gs~iivTtr~~~v~--~~~~-~~~~~~~~----~l~~~~~~~~~~--- 76 (839)
+++++|||||+-..+.....+....+ +...++-++|||||...-. .... .....++. .++.+|+..++.
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 67899999999322212223233332 3335567888999984211 1111 12345555 889899875442
Q ss_pred -CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCC-hhHHHHHHhc-cccccC---CCCCcchhc--hhhhhhhhccCCC
Q 036119 77 -HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD-PRDWEFVLKT-DIWNLR---DSDILPALR--LKQCFAYSSLFPK 148 (839)
Q Consensus 77 -~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~-~~~w~~~~~~-~~~~~~---~~~~~~~l~--~k~~f~~~a~f~~ 148 (839)
.+--.+.+.++.+.|+|+|+++..++..+.+... .......+.. ....+. ...++..+. .+..+...|+++
T Consensus 200 ~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~- 278 (903)
T PRK04841 200 SSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR- 278 (903)
T ss_pred CCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-
Confidence 2234567789999999999999999877754421 1100000000 000000 001112222 566667777765
Q ss_pred CcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhcccccc-ccCCCcceeecHHHHHHHHHHc
Q 036119 149 DYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQ-SSYDASRFVMHDLINDLARWAA 217 (839)
Q Consensus 149 ~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~-~~~~~~~~~mHdlv~~la~~i~ 217 (839)
.++. .+... +... +.+...+.+|.+.+++.. .+.+...|++|++++++.....
T Consensus 279 --~~~~-~l~~~-----l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 279 --SMND-ALIVR-----VTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --cCCH-HHHHH-----HcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2332 22221 1111 123567899999998753 3323457899999999998664
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00068 Score=65.66 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCcceeeeccccccc--CccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccc-ccccccCcccccccc
Q 036119 635 TSLEEISISVLENLK--SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENL-KALPNCMHNLTSLLN 711 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~lp~~l~~l~~L~~ 711 (839)
+.++.+++.+|.+.. .+..-+.++|.|+.|+++.|+....+...-.+..+|++|-+.+.... +..-..+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 455666666666543 22223446777777777776654333222234556676666554321 112223445555566
Q ss_pred cccccc
Q 036119 712 LKISEC 717 (839)
Q Consensus 712 L~l~~~ 717 (839)
|.++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 655555
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0008 Score=61.60 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=69.0
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccc--cccccccCcccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN--LKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~lp~~l~~l~~L~~L~ 713 (839)
+...+++++|.+.... .+..++.|.+|.+.+|.++..-|....-+++|..|.+.+|.+ ++.+ +.+..||.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 4455666666553221 455788888888888877766665445567888888888754 2333 2367788888888
Q ss_pred cccccCCccCCCC----CCCCCcceEEecCCCC
Q 036119 714 ISECPSVVSFPED----GFPTNLQSLDVHDLKI 742 (839)
Q Consensus 714 l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~ 742 (839)
+-+|+....--+. ..+|+|++||..+-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8888876443322 4578888888766543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00072 Score=46.27 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=32.2
Q ss_pred ccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 778 SLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 778 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
+|++|++++|... .+|..++++++|+.|++++| .+++++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 6899999999654 67767899999999999999 6777654
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=5.3e-05 Score=81.87 Aligned_cols=114 Identities=22% Similarity=0.155 Sum_probs=77.0
Q ss_pred chhhhhhcCC-CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccC
Q 036119 625 LESLAERLDN-TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCM 703 (839)
Q Consensus 625 l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l 703 (839)
+..+...+.. +.++.|+|++|++...- .+..++.|++|+|++|. +..+|.....--.|+.|.+++|. +.++ .++
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL-~gi 250 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTL-RGI 250 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhh-hhH
Confidence 3334444443 67788888888876543 66788899999999884 44566533322358899998875 4444 367
Q ss_pred cccccccccccccccCCccCC--CCCCCCCcceEEecCCCCC
Q 036119 704 HNLTSLLNLKISECPSVVSFP--EDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 704 ~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 743 (839)
.+|.+|+.|++++|-+...-. ....+.+|+.|.+.||++-
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888999999999886653221 1145678888888888875
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00056 Score=77.95 Aligned_cols=109 Identities=24% Similarity=0.254 Sum_probs=73.7
Q ss_pred ccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCC
Q 036119 260 CDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAG 339 (839)
Q Consensus 260 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~ 339 (839)
.-++.||+|.+.+.. +..+.+.....++++|+.||+|+++ +..+ ..+++|++|+.|.+.+-.+.. -++ +
T Consensus 145 ~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~-~~~-l- 213 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFES-YQD-L- 213 (699)
T ss_pred hhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCc-hhh-H-
Confidence 457888888655432 1122255678899999999999999 8888 789999999999998876532 110 0
Q ss_pred CCccccCCCccEEeccCccccccC-C-------CcCCCCccEEeecccC
Q 036119 340 QEVDEVFPKLRTLSLDNCCKLQGT-L-------PRRLLLLETLDITSCD 380 (839)
Q Consensus 340 ~~~~~~l~~L~~L~L~~~~~l~~~-l-------p~~l~~L~~L~l~~~~ 380 (839)
...-.|++|++||+|.-....+. + ...+++|+.||.++.+
T Consensus 214 -~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 214 -IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred -HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 01223999999999975333211 1 1246677777777665
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=8.3e-05 Score=83.73 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=21.2
Q ss_pred cceeeecCCCCCCccccC-C-CCCCccCeeeccCCCCcccc
Q 036119 779 LTNLWISDMPDLESISSI-G-ENLTSLKTLRLSDCPKLKYF 817 (839)
Q Consensus 779 L~~L~l~~~~~l~~~~~~-~-~~l~~L~~L~l~~c~~l~~l 817 (839)
++.|+++.|...+.---. . ..+.+++.+++.+|+.+..-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 677777777654322100 0 11556677777777665443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0029 Score=58.04 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=66.0
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC-----cCC
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP-----RRL 368 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp-----~~l 368 (839)
.+...+||++|. +..++. |..++.|.+|.+.+|.|+..-|.- ...+++|+.|.+.+| ++. .+- ..+
T Consensus 42 d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L-----~~~~p~l~~L~LtnN-si~-~l~dl~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDL-----DTFLPNLKTLILTNN-SIQ-ELGDLDPLASC 112 (233)
T ss_pred cccceecccccc-hhhccc-CCCccccceEEecCCcceeeccch-----hhhccccceEEecCc-chh-hhhhcchhccC
Confidence 356678888887 777653 677888888888888886544432 223778888888885 443 222 256
Q ss_pred CCccEEeecccCcc------cccCCCCCCccEEEecccc
Q 036119 369 LLLETLDITSCDQL------LVTIQCLPALSELQIDGCK 401 (839)
Q Consensus 369 ~~L~~L~l~~~~~l------~~~l~~l~~L~~L~l~~~~ 401 (839)
++|++|.+.++..- ...+..+|+|++|++.+..
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77788877776511 1356778888888887653
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0011 Score=75.62 Aligned_cols=107 Identities=20% Similarity=0.144 Sum_probs=68.5
Q ss_pred CCcceeeecccccccCc-cccc-cCCCCCCeEEecCCCCCc-ccCCCCCCCCCcceEecccccccccccccCcccccccc
Q 036119 635 TSLEEISISVLENLKSL-PADL-HNLHHLQKIWIFGCPNLE-SFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLN 711 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 711 (839)
.+|++|++++......- |..+ .-||+|+.|.+++-.... .+.....++|+|..||+|+++. +.+ .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHH
Confidence 55666666654332211 1112 368888888888754432 2344556778899999998854 334 67888999998
Q ss_pred cccccccCCcc--CCCCCCCCCcceEEecCCCCC
Q 036119 712 LKISECPSVVS--FPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 712 L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~ 743 (839)
|.+.+-.+... +-....+++|++||+|.-...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 88887655431 112256888999999877654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.00056 Score=76.97 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=30.8
Q ss_pred CCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCC---CCCCCCCccEEEEcCCCCC
Q 036119 511 PSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP---EVALPSQLRTIIIGGCHAL 574 (839)
Q Consensus 511 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l 574 (839)
+++|+.|+++.+..+...........+++|+.|.+.+|..++.-. .....++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 455555555555544444333333445666666655555422111 1123345666666655544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.00041 Score=59.14 Aligned_cols=105 Identities=17% Similarity=0.087 Sum_probs=70.0
Q ss_pred cceeEeccCCCchh--h-hhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 614 LKYLKIEDCSKLES--L-AERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 614 L~~L~l~~~~~l~~--~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+..+++++|+.... . ........|+..++++|.+....+.....++.++.|++.+|. +..+|.++..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence 55667777764421 1 222334677778888887755444444567788888888874 4467777778888888888
Q ss_pred ccccccccccccCcccccccccccccccCC
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
+.|+... .|..+..+.+|-.|+..+|...
T Consensus 108 ~~N~l~~-~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLNA-EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCcccc-chHHHHHHHhHHHhcCCCCccc
Confidence 8886544 4555666777777777777654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0025 Score=61.20 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=48.7
Q ss_pred ccCCCCCCeEEecCC--CCCcccCCCCCCCCCcceEeccccccc--ccccccCcccccccccccccccCCccCCCC----
Q 036119 655 LHNLHHLQKIWIFGC--PNLESFPEEGLPSTKLTELTIYDCENL--KALPNCMHNLTSLLNLKISECPSVVSFPED---- 726 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---- 726 (839)
+-.+|+|++|.++.| .....++.....+|+|+++++++|++- .+++ .+..+.+|..|++.+|.-...--+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHH
Confidence 335677777777777 444444444444577777777777542 2332 2456667777777777665411111
Q ss_pred CCCCCcceEEecCC
Q 036119 727 GFPTNLQSLDVHDL 740 (839)
Q Consensus 727 ~~~~~L~~L~l~~~ 740 (839)
..+++|+.|+-...
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 34566666664443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0059 Score=34.54 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=12.2
Q ss_pred ceeEEEeCCCcccccccccccC
Q 036119 295 RLRVFSLCGYRNIFNLPNEIGN 316 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~lp~~i~~ 316 (839)
+|++|++++|. ++.+|.+|++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 35666666665 5566655543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.004 Score=59.67 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=41.9
Q ss_pred CCcceEEecCCCCC-Cccccc--cCCCccccceEEEecCCCCCcCCCC-------CCcccceeeecCCCCCCc----ccc
Q 036119 730 TNLQSLDVHDLKIS-KPLLEW--GSNRFTSLRRFTIWGGCPDLVSPPP-------FPASLTNLWISDMPDLES----ISS 795 (839)
Q Consensus 730 ~~L~~L~l~~~~~~-~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~----~~~ 795 (839)
|.|++.....|++- ++...| .+..-.+|+.+.+..|......+.. -..+|+.||+.+|..... +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 55666666666654 211111 2222245566655554333322111 245788888888765432 111
Q ss_pred CCCCCCccCeeeccCC
Q 036119 796 IGENLTSLKTLRLSDC 811 (839)
Q Consensus 796 ~~~~l~~L~~L~l~~c 811 (839)
.+...+.|++|.+..|
T Consensus 237 al~~W~~lrEL~lnDC 252 (388)
T COG5238 237 ALCEWNLLRELRLNDC 252 (388)
T ss_pred Hhcccchhhhccccch
Confidence 2244566788888887
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.016 Score=55.84 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=63.4
Q ss_pred cCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccc--cccccccccCcccccccccccccccCC--ccCCCCCCCCC
Q 036119 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC--ENLKALPNCMHNLTSLLNLKISECPSV--VSFPEDGFPTN 731 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~lp~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~ 731 (839)
..+..|+.|.+.++..+.. . .+..+++|++|.++.| .....++.-...+|+|+++++++|++. ..++....+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-T-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-c-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3566777777777654422 1 2344679999999999 556666666677899999999999874 33444467788
Q ss_pred cceEEecCCCCCC
Q 036119 732 LQSLDVHDLKISK 744 (839)
Q Consensus 732 L~~L~l~~~~~~~ 744 (839)
|.+|++.+|..+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 9999999998774
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.0021 Score=61.48 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=22.6
Q ss_pred CcccceeeecCCCCCCc------cccCC-CCCCccCeeeccCCCCcccc
Q 036119 776 PASLTNLWISDMPDLES------ISSIG-ENLTSLKTLRLSDCPKLKYF 817 (839)
Q Consensus 776 ~~~L~~L~l~~~~~l~~------~~~~~-~~l~~L~~L~l~~c~~l~~l 817 (839)
.++|+.|...+|..-.. ++... .++|-|..|.+.+| .++..
T Consensus 271 ~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E~ 318 (388)
T COG5238 271 VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKEL 318 (388)
T ss_pred CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchhH
Confidence 34666666666654332 22222 55677777777776 44443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.0021 Score=54.90 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=71.1
Q ss_pred Ccceeeecccccc--cCccccccCCCCCCeEEecCCCCCcccCCCCC-CCCCcceEecccccccccccccCccccccccc
Q 036119 636 SLEEISISVLENL--KSLPADLHNLHHLQKIWIFGCPNLESFPEEGL-PSTKLTELTIYDCENLKALPNCMHNLTSLLNL 712 (839)
Q Consensus 636 ~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 712 (839)
.+..++|+.|++. ...+..+.....|+..++++|. ...+|+.+. .++.++.|++++|. +..+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 3456777777653 1222234456677888999885 445665443 35688899998874 66688889999999999
Q ss_pred ccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 713 KISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
+++.|++.........+.+|-.|+.-+|...
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 9999988643332234566667777666554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.0046 Score=59.53 Aligned_cols=97 Identities=19% Similarity=0.125 Sum_probs=58.3
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC--CCCCCCCcceEec
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE--EGLPSTKLTELTI 690 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l 690 (839)
+.+.|+..+|. +.++......+.|+.|.|+-|++..-. .+..+++|++|+|..|.+. ++.+ -+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 45666666663 333433344577777777777765433 3456778888888777443 2222 2456677888888
Q ss_pred ccccccccccc-----cCcccccccccc
Q 036119 691 YDCENLKALPN-----CMHNLTSLLNLK 713 (839)
Q Consensus 691 ~~~~~l~~lp~-----~l~~l~~L~~L~ 713 (839)
..|+-.+.-+. .+.-||+|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77776554432 234466666664
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.05 Score=30.72 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=13.1
Q ss_pred cCcEeEecCccccccccCCCC
Q 036119 319 HLRCLNLSRTKWEEWIPCGAG 339 (839)
Q Consensus 319 ~L~~L~L~~~~~~~~~p~~~~ 339 (839)
+|++||+++|.+. .+|.++.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677777777775 5666543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.84 Score=46.48 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=63.2
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccC---CCCCCCEEEEEecChHHHHHhC----------CCCeEeCCCCCcccccC
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFG---AGAAGSKIVVTTRNLVVAERMG----------ADPVYQLKELSDDDCLD 73 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~---~~~~gs~iivTtr~~~v~~~~~----------~~~~~~~~~l~~~~~~~ 73 (839)
.+++++||+||+|.-+...++.+..-.. ..+....|++|... ....... ....+++++++.+|...
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 6788999999998866566666543221 12233345565543 2222221 23468899999999763
Q ss_pred cC----------CCchH-HHHHHHHHHHhCCChHHHHHHHHHh
Q 036119 74 FT----------RHQSL-KEVGEQIVIKCGGLPLAAKTLGGLL 105 (839)
Q Consensus 74 ~~----------~~~~~-~~~~~~i~~~c~glPlal~~~g~~L 105 (839)
+. ....+ .+....|++.++|.|..+..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 21 11233 4788889999999999998888665
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.12 Score=48.17 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=43.2
Q ss_pred CCCcEEEEEeccCCCCh---h----hHhhhhcccCC--CCCCCEEEEEecChHH---HHHhCCCCeEeCCCCCcccc
Q 036119 7 FGKKFLLVLDDVWNENY---S----RWSELSCPFGA--GAAGSKIVVTTRNLVV---AERMGADPVYQLKELSDDDC 71 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~---~----~~~~l~~~~~~--~~~gs~iivTtr~~~v---~~~~~~~~~~~~~~l~~~~~ 71 (839)
+.+++++|+|++.+-.. . .+..+...+-. ..++.+||||+|.... .........++++++++++.
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 57899999999943221 0 12233322222 3578999999999877 33344446899999998886
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.083 Score=27.57 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=6.7
Q ss_pred ceeEEEeCCCccccccc
Q 036119 295 RLRVFSLCGYRNIFNLP 311 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~lp 311 (839)
+|+.|++++|+ +.++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45566666665 44444
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.039 Score=51.00 Aligned_cols=84 Identities=18% Similarity=0.331 Sum_probs=54.5
Q ss_pred cceeeecccccccCccccccCCCCCCeEEecCCCCCcccC--CCCCCCCCcceEecccccccccc-cccCcccccccccc
Q 036119 637 LEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFP--EEGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLNLK 713 (839)
Q Consensus 637 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~ 713 (839)
++.++-++..+...--..+..+++++.|.+.+|...+... ......++|+.|+|++|+.+++- -.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444444444443333456678888888888887665432 12224579999999999876543 23567788888888
Q ss_pred cccccCC
Q 036119 714 ISECPSV 720 (839)
Q Consensus 714 l~~~~~~ 720 (839)
+.+-+..
T Consensus 183 l~~l~~v 189 (221)
T KOG3864|consen 183 LYDLPYV 189 (221)
T ss_pred hcCchhh
Confidence 8875554
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.32 Score=42.89 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=47.1
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCC------CCeEeCCCCCcccc
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGA------DPVYQLKELSDDDC 71 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~------~~~~~~~~l~~~~~ 71 (839)
..++.+|++|+| ....+|...+..+-+.++..+||+|+.+......-.. ...++|.+|+-.|.
T Consensus 59 ~~~~~~i~iDEi--q~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEI--QYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehh--hhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 347789999999 5456888888877766678999999999888744211 13688888887663
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.021 Score=55.14 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=48.3
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEec
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 545 (839)
+.+.|+..+|.+ .++. ....++.|+.|.|+-| .++++.+...+.+|++|++..|. +..+.+.+...++|+|+.|-|
T Consensus 20 ~vkKLNcwg~~L-~DIs-ic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGL-DDIS-ICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCc-cHHH-HHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 455566666655 2222 2456677777777665 44455555556677777776654 444444444456677777766
Q ss_pred ccCCCCcC
Q 036119 546 RSCNSLVS 553 (839)
Q Consensus 546 ~~~~~l~~ 553 (839)
..||-...
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 66665443
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.28 Score=48.37 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=41.1
Q ss_pred EEEEEeccCCCC-hhhHhh-hhcccCCC-CCCCEEEEEecC----------hHHHHHhCCCCeEeCCCCCcccccC
Q 036119 11 FLLVLDDVWNEN-YSRWSE-LSCPFGAG-AAGSKIVVTTRN----------LVVAERMGADPVYQLKELSDDDCLD 73 (839)
Q Consensus 11 ~LlvLDdv~~~~-~~~~~~-l~~~~~~~-~~gs~iivTtr~----------~~v~~~~~~~~~~~~~~l~~~~~~~ 73 (839)
-+||+||+|... ..+|+. +...+... ..|..|||+|.+ +++...++....++++++++++.+.
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 489999998632 235653 33333321 345666555443 4777777778899999999998863
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.63 Score=52.93 Aligned_cols=194 Identities=18% Similarity=0.196 Sum_probs=101.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcc-cCCCCCCCEEEEEecChHHHHH--hCC-CCeEeCC----CCCcccccCcCC---
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCP-FGAGAAGSKIVVTTRNLVVAER--MGA-DPVYQLK----ELSDDDCLDFTR--- 76 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~-~~~~~~gs~iivTtr~~~v~~~--~~~-~~~~~~~----~l~~~~~~~~~~--- 76 (839)
.+...+||||-=-..-.....-+.. ++...+|=.+|||||++--+.. +.. +...++. .++.+|+-.++.
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 3578999999421111122222222 2344567899999998633321 111 1233333 345555553332
Q ss_pred -CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHh---ccccccCCCCCcchhc--hhhhhhhhccCCCCc
Q 036119 77 -HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLK---TDIWNLRDSDILPALR--LKQCFAYSSLFPKDY 150 (839)
Q Consensus 77 -~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~---~~~~~~~~~~~~~~l~--~k~~f~~~a~f~~~~ 150 (839)
.+-...-++.+.+..+|.+-|+..++=.+++..+.+.--..+. +.+++.-.++|++.+. +|....-||+++.=
T Consensus 208 ~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f- 286 (894)
T COG2909 208 SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF- 286 (894)
T ss_pred CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh-
Confidence 2334466788889999999999988877773322221111111 0011100112332222 34444444443221
Q ss_pred ccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccc-cccCCCcceeecHHHHHHHHHHcc
Q 036119 151 EFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQ-QSSYDASRFVMHDLINDLARWAAG 218 (839)
Q Consensus 151 ~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~-~~~~~~~~~~mHdlv~~la~~i~~ 218 (839)
-..|+....+ ++-|..++++|..++++. +.++....++.|.++.|+-+.--.
T Consensus 287 ---~~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 287 ---NDELCNALTG-------------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred ---hHHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 1233332211 133566799999999885 444567899999999999875543
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.48 Score=46.96 Aligned_cols=93 Identities=24% Similarity=0.272 Sum_probs=48.7
Q ss_pred CCcEEEEEeccCCCC------hhhHhhhhcccCC--CCCCCEEEEEecChHHHHH--------hCCCCeEeCCCCCcccc
Q 036119 8 GKKFLLVLDDVWNEN------YSRWSELSCPFGA--GAAGSKIVVTTRNLVVAER--------MGADPVYQLKELSDDDC 71 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~------~~~~~~l~~~~~~--~~~gs~iivTtr~~~v~~~--------~~~~~~~~~~~l~~~~~ 71 (839)
+++++||+||+..-. ..-...+...+.. ....-.+|+++.+...... .+....+.+++++.+++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 356999999993322 0001112222211 2344556666666666654 12234699999999999
Q ss_pred cCcCCC-----c---hHHHHHHHHHHHhCCChHHHHH
Q 036119 72 LDFTRH-----Q---SLKEVGEQIVIKCGGLPLAAKT 100 (839)
Q Consensus 72 ~~~~~~-----~---~~~~~~~~i~~~c~glPlal~~ 100 (839)
+++... . .-++...+|...+||.|-.|.-
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 943221 2 2356678999999999987753
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.01 E-value=0.087 Score=48.76 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=40.1
Q ss_pred CCcceEecccccccccccccCcccccccccccccccCCccCCC---CCCCCCcceEEecCCCCC
Q 036119 683 TKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE---DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 683 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~ 743 (839)
..++.++-+++.+...-.+.+..+++++.|.+.+|......-- .+..++|+.|+|++|+-.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence 4667777777766655555667777777777777766543211 135678888888888643
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=85.91 E-value=2.6 Score=36.94 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=21.6
Q ss_pred ccCCCCCCeEEecCCCCCcccC-CCCCCCCCcceEeccccccccccc-ccCcccccccccccc
Q 036119 655 LHNLHHLQKIWIFGCPNLESFP-EEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKIS 715 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~ 715 (839)
+.++++|+.+.+... ...++ ..+..+++|+.+.+.++ +..++ ..+.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 445556666666532 22232 23444455666666542 33332 234444455555554
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.20 E-value=0.71 Score=27.19 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=11.2
Q ss_pred CceeEEEeCCCccccccccc
Q 036119 294 PRLRVFSLCGYRNIFNLPNE 313 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~ 313 (839)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666666 6666543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.20 E-value=0.71 Score=27.19 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=11.2
Q ss_pred CceeEEEeCCCccccccccc
Q 036119 294 PRLRVFSLCGYRNIFNLPNE 313 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~ 313 (839)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666666 6666543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=83.50 E-value=4.7 Score=35.30 Aligned_cols=75 Identities=25% Similarity=0.237 Sum_probs=31.0
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC-CCCCCCCcceEecccccccccc-cccCcccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLNLK 713 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~ 713 (839)
+|+.+.+.. .....-...+.++++|+.+.+.++ ...++. .+..+++|+.+.+.++ ...+ ...+..+++|+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 555555553 222222334556666777776653 233332 3444556677766442 2222 22344456666555
Q ss_pred cc
Q 036119 714 IS 715 (839)
Q Consensus 714 l~ 715 (839)
+.
T Consensus 88 ~~ 89 (129)
T PF13306_consen 88 IP 89 (129)
T ss_dssp ET
T ss_pred cC
Confidence 54
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.18 E-value=3.5 Score=43.71 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=62.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHhCC-CCeEeCCCCCcccccCcCCC---chHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERMGA-DPVYQLKELSDDDCLDFTRH---QSLKE 82 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~~-~~~~~~~~l~~~~~~~~~~~---~~~~~ 82 (839)
+++.++|+||+...+......+...+..-..+..+|++|.+.+ +...... ...+++.+++.++....... ..-.+
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~ 219 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDD 219 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHH
Confidence 5667899999966666667777777765555677888777764 4444333 25899999999998632111 11112
Q ss_pred HHHHHHHHhCCChHHHHHHH
Q 036119 83 VGEQIVIKCGGLPLAAKTLG 102 (839)
Q Consensus 83 ~~~~i~~~c~glPlal~~~g 102 (839)
....++..++|.|..+..+.
T Consensus 220 ~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 220 PRAALAALAEGSVGRALRLA 239 (365)
T ss_pred HHHHHHHHcCCCHHHHHHHh
Confidence 22678999999998665553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 839 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 6e-05 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 3e-66
Identities = 60/364 (16%), Positives = 126/364 (34%), Gaps = 76/364 (20%)
Query: 1 ELKKQLFGK--KFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGAD 58
L+ + K + LL+LDDVW+ + + +I++TTR+ V + +
Sbjct: 226 RLRILMLRKHPRSLLILDDVWDSWVLKA---------FDSQCQILLTTRDKSVTDSVMGP 276
Query: 59 --PVYQLKELSDDDCLD------FTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD 110
V L + L+ + L E I+ +C G PL +G LLR +
Sbjct: 277 KYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN 336
Query: 111 -PRDWEFVLKTDIW-------NLRDSDILPALR---------LKQCFAYSSLFPKDYEFQ 153
+ L+ + + + A+ +K + S+ KD +
Sbjct: 337 RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVP 396
Query: 154 DEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYD-ASRFVMHDLINDL 212
+ + +LW E + + ++E ++SL + R+ +HDL D
Sbjct: 397 TKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
Query: 213 ARWAAGEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKR----------LKSICDV 262
+ C +++D +++ ++ R+ D E + S
Sbjct: 445 LT---EKNCSQLQD----LHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497
Query: 263 EHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRC 322
+ L + F +++ + HL + YR+I + + +
Sbjct: 498 KELCALM------FSLDWIKAKTELVGPAHL----IHEFVEYRHILDEKDCAVSENFQEF 547
Query: 323 LNLS 326
L+L+
Sbjct: 548 LSLN 551
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 8e-49
Identities = 38/314 (12%), Positives = 88/314 (28%), Gaps = 52/314 (16%)
Query: 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGAD-PV 60
+ L V DDV E RW A + +VTTR++ ++
Sbjct: 236 CNALIDRPNTLFVFDDVVQEETIRW--------AQELRLRCLVTTRDVEISNAASQTCEF 287
Query: 61 YQLKELSDDDCLD-FTRH-------QSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPR 112
++ L D+C D + + ++V + + G P + +
Sbjct: 288 IEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEK 347
Query: 113 DWEFVLK------TDIWNLRDSD---ILPALRL---------KQCFAYSSLFPKDYEFQD 154
+ K + + + AL+ + A++ + P +
Sbjct: 348 MAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPV 407
Query: 155 EEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDA-SRFVMHDLINDLA 213
+ + + ++E +++D + ++ L R F + +I+
Sbjct: 408 KLWSCVIPVDICSNEE---EQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFL 464
Query: 214 RWAAGEICFRMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMEL 273
+ + L G + + I H + F
Sbjct: 465 KHVVDAQTIA-------NGISILEQRLLE----IGNNNVSVPERHI--PSHFQKFRRSSA 511
Query: 274 SHFDENYLAWSVLQ 287
S +V++
Sbjct: 512 SEMYPKTTEETVIR 525
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-32
Identities = 64/393 (16%), Positives = 126/393 (32%), Gaps = 92/393 (23%)
Query: 1 ELKKQLFGKKF---LLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGA 57
EL++ L K + LLVL +V N LSC KI++TTR V + + A
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---------KILLTTRFKQVTDFLSA 283
Query: 58 DPVYQLKELSDDDCLDFTRHQSLKEVGEQIVIK--------CGGLPLAAKTLGGLLRGRD 109
+ D + T + + + + + P + + RD
Sbjct: 284 ATTTHIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RD 339
Query: 110 DPRDWEFVLKTDIWNLRDS-----DILPALRLKQCFAYSSLFPKDYEFQDEEIILLWTAE 164
W+ + L ++L ++ F S+FP + L+W
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 165 GFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICFRM 224
D V +LH SL ++ + S + + +L E + +
Sbjct: 400 IKSDVM-----------VVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKLENE--YAL 445
Query: 225 EDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICD-------VEHLRTFLPMEL-SHF 276
++ + H++ +D + + D HL+ E + F
Sbjct: 446 HRSI-----------VDHYNIPKT-FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 277 DENYL--------------AWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNE------IGN 316
+L AW+ +LN L +L+ Y+ + N+ +
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-----YKP-YICDNDPKYERLVNA 547
Query: 317 LKH--LRC-LNLSRTKWEEWIPCGAGQEVDEVF 346
+ + NL +K+ + + E + +F
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 82.2 bits (202), Expect = 4e-16
Identities = 97/661 (14%), Positives = 195/661 (29%), Gaps = 162/661 (24%)
Query: 129 DILPALRLKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELH 188
DIL F +++ +D + + +++ +
Sbjct: 20 DILSVFEDA--------FVDNFDCKD--------VQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 189 SRSLF----QQSSYDASRFVMHDLINDLARWAAGEICFRMEDTLAGENRQKFSESLRHFS 244
+ LF + +FV +++ ++ + + E RQ + +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFV-EEVLRINYKF--------LMSPIKTEQRQPSMMTRMYIE 114
Query: 245 YICGEY-DGEK-------RLKSICDVEHLRTFLPMELSHFDENYLA----------WSVL 286
Y D + RL+ LR L +EL + W L
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQ---PYLKLRQAL-LELR--PAKNVLIDGVLGSGKTWVAL 168
Query: 287 QMLLNHLPRLRVFSLCGYRNIF-------NLPNEIGNLKHLRCLNLSRTKWEEW-----I 334
+ L++ IF N P + L+ L L W
Sbjct: 169 DVCLSY-KVQCKMD----FKIFWLNLKNCNSPETV--LEML--QKLLYQIDPNWTSRSDH 219
Query: 335 PCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLL---------ETLDITSCDQLLVT 385
+ + +LR L LL+L ++ SC ++L+T
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSK------PYENCLLVLLNVQNAKAWNAFNL-SC-KILLT 271
Query: 386 IQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQ-----AYFWRSETRLPQDIRSLNWLQ 440
+ L S H + E Y LP+++ + N
Sbjct: 272 TRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--- 326
Query: 441 ISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDC- 499
P+ +S++ D + C+ LT + ++ L + E R
Sbjct: 327 ----PRRLSIIAESIRDG-----LATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMF 375
Query: 500 ASLVSFPQAA-LPSQLRSVVIEECDALESLPEAWMQN-SNSSLECLAIRSCNSLVSFPEV 557
L FP +A +P+ L S++ + +S + SL + + S +S P +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVI--KSDVMVVVNKLHKYSL--VEKQPKESTISIPSI 431
Query: 558 ALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEV--SYCSN-LALLSRNGNLPQSL 614
L +L+ E +H + ++H + ++ S+ L + +
Sbjct: 432 YL--ELK------VKLEN---EYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 615 KY-LKIEDCSKLESLAER--LDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPN 671
+ LK + + +L LD LE+ + + L+ L L+ + C N
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 672 LESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVV----SFPEDG 727
+ E + + LP NL S+ ++ ++
Sbjct: 538 DPKY-----------ERLVNAILDF--LPKIEENLI------CSKYTDLLRIALMAEDEA 578
Query: 728 F 728
Sbjct: 579 I 579
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 57/306 (18%), Positives = 100/306 (32%), Gaps = 42/306 (13%)
Query: 467 LQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALE 526
+ L L L + S + P AL+
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR----TGRALK 69
Query: 527 SLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEA----- 580
+ + + L + L FP + S L+ + I L LP+
Sbjct: 70 ATADLLEDATQPGRVALEL-RSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFA 127
Query: 581 -----WMHN----ELPAT------LEHLEVSYCSNLALLSRN-GNLP--------QSLKY 616
+ LPA+ L L + C L L + +L+
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 617 LKIEDCSKLESLAERLDN-TSLEEISISVLEN-LKSLPADLHNLHHLQKIWIFGCPNLES 674
L++ + + + SL + N +L+ + I + L +L +H+L L+++ + GC L +
Sbjct: 188 LRL-EWTGIRSLPASIANLQNLKSLKIR--NSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 675 FPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQ 733
+P L L + DC NL LP +H LT L L + C ++ P
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
Query: 734 SLDVHD 739
+ V
Sbjct: 305 IILVPP 310
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 5e-22
Identities = 68/357 (19%), Positives = 122/357 (34%), Gaps = 82/357 (22%)
Query: 488 LSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRS 547
S + +L + SQ + +A + + + +NS+ + R+
Sbjct: 11 SSGRENLYFQGSTALRPYHDVL--SQWQR----HYNADRNRWHSAWRQANSNNPQIETRT 64
Query: 548 CNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRN 607
+L + + L +A LE+ +
Sbjct: 65 GRALKATAD-------------------LLEDATQPG-----RVALELRSVPLPQFPDQA 100
Query: 608 GNLPQSLKYLKIEDCSKLESLAERLDN-TSLEEISISVLEN-LKSLPADLHNLHHLQKIW 665
L L+++ I D + L L + + LE ++++ N L++LPA + +L+ L+++
Sbjct: 101 FRL-SHLQHMTI-DAAGLMELPDTMQQFAGLETLTLA--RNPLRALPASIASLNRLRELS 156
Query: 666 IFGCPNLESFPEE----GLPS-----TKLTELTIYDCENLKALPNCMHNLTSLLNLKISE 716
I CP L PE L L + +++LP + NL +L +LKI
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRN 215
Query: 717 CPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPF 775
+ + L+ LD+ G + PP F
Sbjct: 216 S-PLSALGPAIHHLPKLEELDLR-----------GCTALRNY--------------PPIF 249
Query: 776 P--ASLTNLWISDMPDLESI-SSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQL 829
A L L + D +L ++ I LT L+ L L C L LP + QL
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSR-----LPSLIAQL 300
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 61/423 (14%), Positives = 111/423 (26%), Gaps = 122/423 (28%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKL 349
+H G + + + + + +R W
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNR--WHSA----------WRQANS 55
Query: 350 RTLSLD--NCCKLQGTLPRRL-----LLLETLDITSC--DQLLVTIQCLPALSELQIDGC 400
++ L+ L L++ S Q L L + ID
Sbjct: 56 NNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114
Query: 401 KRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQ 460
L LP ++
Sbjct: 115 G--------L----------------MELPDTMQQFA----------------------- 127
Query: 461 PELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIE 520
L+ L L+ L LP ++ +L+ L E+ I C L P
Sbjct: 128 -----GLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELP-------------- 167
Query: 521 ECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPE 579
+ L S + +L+ L + + S P +A L+++ I L +L
Sbjct: 168 --EPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNSP-LSALGP 223
Query: 580 AWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDN-TSLE 638
A +L L+ L + C+ L + L+
Sbjct: 224 AI--------------------------HHL-PKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 639 EISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA 698
+ + NL +LP D+H L L+K+ + GC NL P + + +
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316
Query: 699 LPN 701
+
Sbjct: 317 DQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 62/353 (17%), Positives = 112/353 (31%), Gaps = 92/353 (26%)
Query: 272 ELSHFDENYLAWSVLQMLLNHLPRLRVFSL----CGYRNIFNLPNEIGNLKHLRCLNLSR 327
++ L+ + L + P++ L HL+ + +
Sbjct: 54 NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDA 113
Query: 328 TKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLETLDITSCDQLLV 384
E +P Q F L TL+L L+ LP L L L I +C +L
Sbjct: 114 AGLME-LPDTMQQ-----FAGLETLTLAR-NPLR-ALPASIASLNRLRELSIRACPEL-- 163
Query: 385 TIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRC 444
T LP+ + S + +
Sbjct: 164 ------------------------------------------TELPEPLASTDASGEHQ- 180
Query: 445 PQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVS 504
L++L Q L L G+ LP ++ L +L ++I + L +
Sbjct: 181 -GLVNL-----------------QSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSA 220
Query: 505 FPQA--ALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPS 561
A L +L + + C AL + P + L+ L ++ C++L++ P ++ +
Sbjct: 221 LGPAIHHL-PKLEELDLRGCTALRNYPP-IFGGR-APLKRLILKDCSNLLTLPLDIHRLT 277
Query: 562 QLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSL 614
QL + + GC L LP L A L + + + P +
Sbjct: 278 QLEKLDLRGCVNLSRLP------SLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 15/187 (8%)
Query: 648 LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLT 707
+ S H+ + ++ G L + + + + N N
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN--SNNP 58
Query: 708 SLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCP 767
+ + ED +L++ + + + + R + L+ TI
Sbjct: 59 QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF--RLSHLQHMTI--DAA 114
Query: 768 DLVSPPPFPASLTNLWISDMPD--LESI-SSIGENLTSLKTLRLSDCPKLKYFSEQGLPK 824
L+ P L + L ++ +SI +L L+ L + CP+L LP+
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIA-SLNRLRELSIRACPELTE-----LPE 168
Query: 825 SLLQLHI 831
L
Sbjct: 169 PLASTDA 175
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 116/525 (22%), Positives = 183/525 (34%), Gaps = 119/525 (22%)
Query: 306 NIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVF--------PKLRTLSLDNC 357
N+ +P E N+K + ++WE P G G++ + + L L+N
Sbjct: 22 NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN- 80
Query: 358 CKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVR 417
L +LP LE+L SC+ L + +L L +D
Sbjct: 81 LGLS-SLPELPPHLESLVA-SCNSLTELPELPQSLKSLLVDNN----------------- 121
Query: 418 EQAYFWRSETRLPQDIRSLNWLQISRC--------PQLISLVTVEEHD---QQQPELPCR 466
+ L L +L +S L ++ + ++ P+LP
Sbjct: 122 -------NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 174
Query: 467 LQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALE 526
L+F+ + L LP+ L L LT + + SL P LP L S+V LE
Sbjct: 175 LEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGNNI-LE 228
Query: 527 SLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNEL 586
LPE + L + N L + P+ LP L + + + L LP EL
Sbjct: 229 ELPE---LQNLPFLTTIYA-DNNLLKTLPD--LPPSLEALNVRDNY-LTDLP------EL 275
Query: 587 PATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLE 646
P +L L+VS L LP +L YL ++ SL + SLEE+++S
Sbjct: 276 PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSN-EIRSLCDLP--PSLEELNVS--N 326
Query: 647 N-LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHN 705
N L LPA L L I +L PE L +L + L+ P+ +
Sbjct: 327 NKLIELPALPPRLERL----IASFNHLAEVPEL---PQNLKQLHVEYN-PLREFPDIPES 378
Query: 706 LTSL-LNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWG 764
+ L +N ++E P P NL+ L V N
Sbjct: 379 VEDLRMNSHLAEVPE--------LPQNLKQLHVET------------NPLREF------- 411
Query: 765 GCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLS 809
P P S+ +L ++ ++ E L+
Sbjct: 412 --------PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 3e-18
Identities = 98/426 (23%), Positives = 151/426 (35%), Gaps = 86/426 (20%)
Query: 427 TRLPQDIRSL--------NWLQISRCPQLISLVTVEEHDQQQPELPCR-LQFLELSCCEG 477
T +P + ++ W + R + E + + R LEL+ G
Sbjct: 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-G 82
Query: 478 LTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIE--ECDALESLPEAWMQN 535
L+ LP+ L SL + C SL P+ LP L+S++++ AL LP
Sbjct: 83 LSSLPELPPHLESL----VASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP------ 130
Query: 536 SNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEV 595
LE L + S N L PE+ S L+ I + L+ LP+ LP +LE +
Sbjct: 131 --PLLEYLGV-SNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPD------LPPSLEFIAA 180
Query: 596 SYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADL 655
L L NLP L + ++ L+ L + SLE I N+ +L
Sbjct: 181 GNN-QLEELPELQNLP-FLTAIYADNN-SLKKLPDLP--LSLESIVAG--NNILEELPEL 233
Query: 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSL--LNLK 713
NL L I+ L++ P+ L L + D L LP +LT L
Sbjct: 234 QNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDN-YLTDLPELPQSLTFLDVSENI 288
Query: 714 ISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGS--------NRFTSLRRFTIWGG 765
S P NL L+ +I S N+ L
Sbjct: 289 FSGLSE--------LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-------- 332
Query: 766 CPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKS 825
P P L L S ++ + E +LK L + L+ F + +P+S
Sbjct: 333 -------PALPPRLERLIASF----NHLAEVPELPQNLKQLHVEYN-PLREFPD--IPES 378
Query: 826 LLQLHI 831
+ L +
Sbjct: 379 VEDLRM 384
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 90/380 (23%), Positives = 141/380 (37%), Gaps = 74/380 (19%)
Query: 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDAL 525
+ E P + R+ DC L Q + + L
Sbjct: 35 SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC----------LDRQAHELELNNLG-L 83
Query: 526 ESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNE 585
SLPE LE L SCNSL PE LP L+++++ + L++L +
Sbjct: 84 SSLPELP-----PHLESLVA-SCNSLTELPE--LPQSLKSLLVDNNN-LKALSD------ 128
Query: 586 LPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVL 645
LP LE+L VS L L N LK + +++ L+ L + SLE I+
Sbjct: 129 LPPLLEYLGVSNN-QLEKLPELQNSS-FLKIIDVDNN-SLKKLPDLP--PSLEFIAAG-- 181
Query: 646 EN-LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMH 704
N L+ LP +L NL L I+ +L+ P+ L + + L+ LP +
Sbjct: 182 NNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLESIVAGNN-ILEELPE-LQ 234
Query: 705 NLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK--------PLLEWGSNRFTS 756
NL L + + + P+ P +L++L+V D ++ L+ N F+
Sbjct: 235 NLPFLTTIYADNN-LLKTLPD--LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291
Query: 757 LRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKY 816
L P +L L S I S+ + SL+ L +S+ KL
Sbjct: 292 L---------------SELPPNLYYLNASSN----EIRSLCDLPPSLEELNVSNN-KLIE 331
Query: 817 FSEQGLPKSLLQLHIYACPL 836
LP L +L L
Sbjct: 332 LPA--LPPRLERLIASFNHL 349
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 3e-17
Identities = 87/616 (14%), Positives = 182/616 (29%), Gaps = 139/616 (22%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIP-CGAGQEVDEVFPK 348
L++ R+ SL G+ +P+ IG L L+ L+ G + ++ +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 349 LRTLSLDNCCKLQGTLPRRL------------------------LLLETLDITSCDQLLV 384
+ + K+ +RL + L+ I + +
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438
Query: 385 TI----QCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQ 440
I Q L L + + + + + A + +E +++ L ++
Sbjct: 439 FISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 441 ISRCPQLISLVTVEEHDQQQPE----LPCRLQFLELSC---------CEGLTRLPQALLT 487
+ CP + L P+ LP LQ L ++C TRL T
Sbjct: 498 LYNCPNMTQL----------PDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 488 LSSLTEMRIHDCASLVSFPQAALPSQLRSVV--------IEECDALESLPEAWMQNSNSS 539
+ + +L FP +A ++ + + +A +
Sbjct: 547 GPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN---------VK 596
Query: 540 LECLAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSY 597
L L + N + PE A Q+ + L+ +P + + + ++ SY
Sbjct: 597 LTDLKL-DYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVY-VMGSVDFSY 653
Query: 598 ------------------CSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEE 639
N + ++ + N Q S + ++ L N +
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI--ILSNNLMTS 711
Query: 640 ISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPS--TKLTELTIYDCENLK 697
I +LK + N + L I + L S ++ + L+ + +
Sbjct: 712 IP---ENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFS 766
Query: 698 ALPNCMHNLTSLLNLKISECPSVVS------FPED-GFPTNLQSLDVHDLKISKPLLEWG 750
+ P N + L I +P +L L + G
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI------------G 814
Query: 751 SNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLE-SISSIGENLTS-LKTLRL 808
SN + L L I+D P++ ++S+ + + + L
Sbjct: 815 SNDIRKV--------------DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860
Query: 809 SDCPKLKYFSEQGLPK 824
++ G+ +
Sbjct: 861 DKTQDIRGCDALGIER 876
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 70/491 (14%), Positives = 145/491 (29%), Gaps = 116/491 (23%)
Query: 267 TFLPMELSHFDENYLAWSVLQML---LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCL 323
T+ + + D N + ++L L L N+ LP+ + +L L+ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520
Query: 324 NLS----RTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLL-----LETL 374
N++ + + + ++ PK++ + L+ P L L L
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEE-FPASASLQKMVKLGLL 578
Query: 375 DITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIR 434
D ++ L A
Sbjct: 579 DCVHNK-----VRHLEAFGTNV-------------------------------------- 595
Query: 435 SLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQA--LLTLSSLT 492
L L++ Q+ + + +++ L S + L +P ++ +
Sbjct: 596 KLTDLKLDYN-QIEEI------PEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMG 647
Query: 493 EMRIHDCASLVSFPQAALPS--QLRSVVIEECD----ALESLPEAWMQNSNSSLECLAIR 546
+ + S + S + + ++ P S + + +
Sbjct: 648 SVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTIIL- 704
Query: 547 SCNSLVSFPEVALP---------SQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSY 597
S N + S PE +L L TI + L SL + + LP L +++VSY
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPY-LSNMDVSY 762
Query: 598 CSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHN 657
S + P + S+L++ + L+ P +
Sbjct: 763 N----CFS---SFPTQ-----PLNSSQLKAF------GIRHQRDAEGNRILRQWPTGITT 804
Query: 658 LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENL----KALPNCMHNLTSLL--- 710
L ++ I ++ E+ P L L I D N+ ++ + +L
Sbjct: 805 CPSLIQLQIGSN-DIRKVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861
Query: 711 -NLKISECPSV 720
I C ++
Sbjct: 862 KTQDIRGCDAL 872
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 82/317 (25%), Positives = 122/317 (38%), Gaps = 67/317 (21%)
Query: 507 QAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTI 566
+A L + + + E L +LP+ + + L I N+L S P LP +LRT+
Sbjct: 35 RACLNNGNAVLNVGESG-LTTLPDCLPAH----ITTLVI-PDNNLTSLPA--LPPELRTL 86
Query: 567 IIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLE 626
+ G L SLP LP L L + L LP L L I +L
Sbjct: 87 EVSGNQ-LTSLPV------LPPGLLELSIFSNPLTHL----PALPSGLCKLWIFGN-QLT 134
Query: 627 SLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLT 686
SL L+E+S+S L SLPA L L W + L S P + L
Sbjct: 135 SLPVLPPG--LQELSVSDN-QLASLPALPSELCKL---WAYNN-QLTSLPMLP---SGLQ 184
Query: 687 ELTIYDCENLKALPNCMHNLTSL--LNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744
EL++ D L +LP L L N +++ P+ P+ L+ L V +++
Sbjct: 185 ELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPA--------LPSGLKELIVSGNRLTS 235
Query: 745 -----PLLEW---GSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESI-SS 795
L+ NR TSL P P+ L +L + L + S
Sbjct: 236 LPVLPSELKELMVSGNRLTSL---------------PMLPSGLLSLSVYR-NQLTRLPES 279
Query: 796 IGENLTSLKTLRLSDCP 812
+ +L+S T+ L P
Sbjct: 280 LI-HLSSETTVNLEGNP 295
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 90/320 (28%), Positives = 123/320 (38%), Gaps = 53/320 (16%)
Query: 427 TRLPQDI-RSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL 485
T LP + + L I L SL P LP L+ LE+S + LT LP
Sbjct: 53 TTLPDCLPAHITTLVIPDN-NLTSL----------PALPPELRTLEVSGNQ-LTSLPVLP 100
Query: 486 LTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545
L L+ L P ALPS L + I L SLP L+ L++
Sbjct: 101 PGLLELSIFSN----PLTHLP--ALPSGLCKLWIFGNQ-LTSLPV-----LPPGLQELSV 148
Query: 546 RSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLS 605
S N L S P ALPS+L + L SLP LP+ L+ L VS LA L
Sbjct: 149 -SDNQLASLP--ALPSELCKLWAYNNQ-LTSLPM------LPSGLQELSVSDN-QLASLP 197
Query: 606 RNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIW 665
LP L L + +L SL + L+E+ +S L SLP L L
Sbjct: 198 ---TLPSELYKLWAYNN-RLTSLPALP--SGLKELIVSGNR-LTSLPVLPSELKEL---M 247
Query: 666 IFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE 725
+ G L S P + L L++Y L LP + +L+S + + P +S
Sbjct: 248 VSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP--LSERT 300
Query: 726 DGFPTNLQSLDVHDLKISKP 745
+ S + I +
Sbjct: 301 LQALREITSAPGYSGPIIRF 320
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 5e-12
Identities = 78/406 (19%), Positives = 120/406 (29%), Gaps = 73/406 (17%)
Query: 267 TFLPMEL-SHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNL 325
T LP L +H + + L L P LR + + +LP L L +
Sbjct: 53 TTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEV-SGNQLTSLPVLPPGLLELSIFSN 111
Query: 326 SRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVT 385
T L L + +L +LP L+ L + S +QL
Sbjct: 112 PLTHLPALP------------SGLCKLWIFG-NQLT-SLPVLPPGLQELSV-SDNQLASL 156
Query: 386 IQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCP 445
L +L + T LP L L +S
Sbjct: 157 PALPSELCKLWAYNNQL------------------------TSLPMLPSGLQELSVSDN- 191
Query: 446 QLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSF 505
QL SL P LP L L LT LP S L E+ + L S
Sbjct: 192 QLASL----------PTLPSELYKLWAYNNR-LTSLPA---LPSGLKELIVSGN-RLTSL 236
Query: 506 PQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLR 564
P LPS+L+ +++ L SLP S L L++ N L P + S
Sbjct: 237 P--VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYR-NQLTRLPESLIHLSSET 287
Query: 565 TIIIGGCHALESLPEAWMHN--ELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC 622
T+ + G L + P + + + L + +
Sbjct: 288 TVNLEGNP-LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346
Query: 623 SKLESLAERLDNTSLEEISI---SVLENLKSLPADLHNLHHLQKIW 665
+ A+R E+ + L+ L + + +I
Sbjct: 347 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQIS 392
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 32/221 (14%)
Query: 620 EDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEG 679
+ + N +++ L +LP L H+ + I NL S P
Sbjct: 25 RGRAAVVQKMRACLNNGNAVLNVGES-GLTTLPDCL--PAHITTLVIPDN-NLTSLPALP 80
Query: 680 LPSTKLTELTIYDCENLKALPNCMHNLTSL--LNLKISECPSVVSFPEDGFPTNLQSLDV 737
+L L + L +LP L L + ++ P++ P+ L L +
Sbjct: 81 ---PELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWI 128
Query: 738 HDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIG 797
+++ L+ ++ L S P P+ L LW + ++S+
Sbjct: 129 FGNQLTSL-----PVLPPGLQELSVSD--NQLASLPALPSELCKLWAYNN----QLTSLP 177
Query: 798 ENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPLIE 838
+ L+ L +SD +L LP L +L Y L
Sbjct: 178 MLPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNNRLTS 215
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 79/596 (13%), Positives = 162/596 (27%), Gaps = 142/596 (23%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKL 349
LN R+ SL G+ +P+ IG L L L L +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG----EKVNERLFGPKGISAN 132
Query: 350 RTLSLDNC--CKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSS 407
+ Q T + D L + I+ +
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSD----------------LIKDCINSDPQQKSIK 176
Query: 408 PHLVHAVNVREQAYFWRSETRLPQDI---RSLNWLQISRCPQLISLVTVEEHDQQQPELP 464
+ + + T + + + L + ++ E
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEA--------- 226
Query: 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDA 524
+ + L LT++ +++C +L P ++
Sbjct: 227 --WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----------LKALPE 274
Query: 525 LESLPEAWM-QNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMH 583
++ + + N S E L + + + + +++ I IG + L++ P
Sbjct: 275 MQLI---NVACNRGISGEQLK----DDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL 326
Query: 584 NELPATLEHLEVSY------------CSNLALL--SRN----------GNLPQSLKYLKI 619
++ L LE Y LA L + N G ++ L
Sbjct: 327 QKMKK-LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE-QVENLSF 384
Query: 620 EDCSKLESLAERLDN---TSLEEISIS-------VLENLKSLPADLHNLHHLQKIWIFGC 669
KL+ + D + + I S +N L ++ I +
Sbjct: 385 AHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Query: 670 PNLESFPEEGLPS-TKLTELTIYDC-------ENLKALPNCMHNLTSLLNLKISECPSVV 721
+ FP+E + + L+ + + +LK N L ++ + +
Sbjct: 444 -QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT 501
Query: 722 SFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTN 781
+D T L L DL N F+ P P + +
Sbjct: 502 KLSDDFRATTLPYLVGIDL---------SYNSFSKF---------------PTQPLNSST 537
Query: 782 L---WISDMPDLESISSIGE------NLTSLKTLRLSDCPKLKYFSEQGLPKSLLQ 828
L I + D + ++ E SL L++ + + + + +
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DI-----RKVNEKITP 587
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 5e-13
Identities = 69/546 (12%), Positives = 142/546 (26%), Gaps = 107/546 (19%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKL 349
L + ++ + + + KL
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-----LTKL 208
Query: 350 RTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLL-VTIQCLPALSELQIDGCKRVVFSSP 408
R + N E + + + L L+++++ C +
Sbjct: 209 RQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL----- 262
Query: 409 HLVHAVNVREQAYFWRSETRLPQDI---RSLNWLQISRCPQLISLVTVEEHDQQQPELPC 465
T+LP + + + ++ + IS +++ Q + P
Sbjct: 263 ------------------TKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAPV 303
Query: 466 --RLQFLELSCCEGLTRL--PQALLTLSSLTEMRIHDCASLVSFPQA-ALPSQLRSVVIE 520
++Q + + L +L + L + L A +L S+ +
Sbjct: 304 GEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLA 361
Query: 521 ECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP---SQLRTIIIGGCHALESL 577
+ +P + + +E L+ N L P + S + I + S+
Sbjct: 362 YNQ-ITEIPANFCGFT-EQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSV 417
Query: 578 PEAWMHNELPATLEHLEVSYCSNLALL--SRN---GNLPQSLKYLKIEDCSKLESLAERL 632
L T N++ + S N + S L S+ L
Sbjct: 418 DGKNFDP-LDPTPFKG-----INVSSINLSNNQISKFPKEL-----FSTGSPLSSI--NL 464
Query: 633 DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPS--TKLTELTI 690
L EI +LK + N + L I + L ++ + L + +
Sbjct: 465 MGNMLTEIP---KNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDL 520
Query: 691 YDCENLKALPNCMHNLTSLLNLKISECPSVV------SFPED-GFPTNLQSLDVHDLKIS 743
+ P N ++L I +PE +L L +
Sbjct: 521 SYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI------ 573
Query: 744 KPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSL 803
GSN + +++ L I D P++ S
Sbjct: 574 ------GSNDIRKV--------------NEKITPNISVLDIKDNPNISIDLSYVCPYIEA 613
Query: 804 KTLRLS 809
L
Sbjct: 614 GMYMLF 619
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 49/448 (10%), Positives = 122/448 (27%), Gaps = 96/448 (21%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSR---TKWEEWIPCGAGQEVDEVF 346
++L L + N+ LP + L ++ +N++ E+ V
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 347 PKLRTLSLDNCCKLQGTLPR---RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCK 401
K++ + + + ++ L L+ L L+ L + +
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Query: 402 RVVFSSPHLVHAVNVREQAYFWRSETRLPQDI----RSLNWLQISRCPQLISLVTVEEHD 457
+ +P + + L + +L + + +
Sbjct: 365 ---ITE---------------------IPANFCGFTEQVENLSFAHN-KLKYIPNIFDAK 399
Query: 458 QQQPELPCRLQFLELS-------CCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAAL 510
+ ++ S + L +++ + + + + FP+
Sbjct: 400 SVS-----VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELF 453
Query: 511 --PSQLRSVVIEECDALESLPEAWMQNSN------SSLECLAIRSCNSLVSFPEVALPSQ 562
S L S+ + L +P+ +++ N L + + N L + +
Sbjct: 454 STGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDL-RFNKLTKLSDDFRATT 511
Query: 563 ---LRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRN---GNLPQSLKY 616
L I + P P L+ N N P+
Sbjct: 512 LPYLVGIDLSYNS-FSKFPTQ------PLNSSTLKGFGIRNQRDAQGNRTLREWPEG--- 561
Query: 617 LKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADL-HNLHHLQKIWIFGCPNLESF 675
I C L L ++ + + +++ + N+ L D+ N S
Sbjct: 562 --ITLCPSLTQL--QIGSNDIRKVNEKITPNISVL--DIKDN-------------PNISI 602
Query: 676 PEEGLPSTKLTELTIYDCENLKALPNCM 703
+ + + + + + C
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQDIRGCD 630
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 47/393 (11%), Positives = 109/393 (27%), Gaps = 71/393 (18%)
Query: 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDAL 525
R+ L L R+P A+ L+ L + + + P + + +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLAL-GSHGEKVNERLFGPKGISA-----NMSD 135
Query: 526 ESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNE 585
E + M + ++ S L I +S+ ++ +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDF------------SDLIKDCINSDPQQKSIKKS---SR 180
Query: 586 LPATLEHLEVSYCSNLALLSRN-GNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISV 644
+ + +N+ +S+ L L+ + + + E +
Sbjct: 181 ITLKDTQIGQLS-NNITFVSKAVMRL-TKLRQFYMGNSP----FVAENICEAWENENSEY 234
Query: 645 LENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC--ENLKALPNC 702
+ K+ NL L + ++ CPNL P ++ + + + + L +
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294
Query: 703 MHNLTSLLNL-----------KISECPSVVSFPEDGFPTNLQSLDVHDLKISKPL----- 746
L + P S L L+ ++ L
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSL---QKMKKLGMLECLYNQLEGKLPAFGS 351
Query: 747 ---LEW---GSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGE-- 798
L N+ T + G + NL + L+ I +I +
Sbjct: 352 EIKLASLNLAYNQITEIPA-NFCGFTE----------QVENLSFAHN-KLKYIPNIFDAK 399
Query: 799 NLTSLKTLRLSDCP--KLKYFSEQGLPKSLLQL 829
+++ + + S + + L + +
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 61/392 (15%), Positives = 120/392 (30%), Gaps = 70/392 (17%)
Query: 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDAL 525
L L+ +T + + L+ LT++ ++ + + L + + L
Sbjct: 43 TLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLDLSQNT-NLTYLACDSNK-L 97
Query: 526 ESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPS---------QLRTIIIGGCHALES 576
+L + L L N L P L I + L
Sbjct: 98 TNLD----VTPLTKLTYLNC-DTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTE 152
Query: 577 LPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTS 636
L N+ + L+V+ + L L + N + L + L L D +
Sbjct: 153 L--DCHLNKK---ITKLDVTPQTQLTTLDCSFN---KITELDVSQNKLLNRL--NCDTNN 202
Query: 637 LEEISISVLENLKSLPA--------DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688
+ ++ ++ L L D+ L L L L +KLT L
Sbjct: 203 ITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVN-PLTELDVSTL--SKLTTL 259
Query: 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK---- 744
+L + + T L+ + C + + T L LD I++
Sbjct: 260 HCIQT-DLLEIDLT--HNTQLIYFQAEGCRK-IKELDVTHNTQLYLLDCQAAGITELDLS 315
Query: 745 --PLLEW---GSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGEN 799
P L + + T L D+ L +L + ++ SS+G
Sbjct: 316 QNPKLVYLYLNNTELTEL----------DVSHNT----KLKSLSCVNAH-IQDFSSVG-K 359
Query: 800 LTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHI 831
+ +L ++ + ++ L + L + +
Sbjct: 360 IPALNNNFEAE-GQTITMPKETLTNNSLTIAV 390
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 61/431 (14%), Positives = 114/431 (26%), Gaps = 115/431 (26%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKL 349
+ L +L + C + L + L LN +R E I +L
Sbjct: 102 VTPLTKLTYLN-CDTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSH-------NTQL 150
Query: 350 RTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPH 409
L K+ L TLD + + + L+ L D
Sbjct: 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN-------- 202
Query: 410 LVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQF 469
I L+ +++ Q L F
Sbjct: 203 -----------------------ITKLD---LNQNIQ--------------------LTF 216
Query: 470 LELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLP 529
L+ S + LT + + L+ LT L + + L +L
Sbjct: 217 LDCSSNK-LTEID--VTPLTQLTYFDCSVN-------------PLTELDVSTLSKLTTL- 259
Query: 530 EAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPAT 589
+ L + + L+ F + +++ + + L L
Sbjct: 260 ----HCIQTDLLEIDLTHNTQLIYF-QAEGCRKIKELDVTHNTQLYLL--DCQAAG---- 308
Query: 590 LEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLK 649
+ L++S L L N L L + +KL+SL N +++ S
Sbjct: 309 ITELDLSQNPKLVYLYLNNT---ELTELDVSHNTKLKSL--SCVNAHIQDFS-------- 355
Query: 650 SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT----IYDCENLKALPNCMHN 705
+ + L + + P+E L + LT + N +
Sbjct: 356 ----SVGKIPALNNNFEAE-GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGG 410
Query: 706 LTSLLNLKISE 716
+ I+
Sbjct: 411 VYDQATNTITW 421
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 7e-12
Identities = 81/560 (14%), Positives = 183/560 (32%), Gaps = 89/560 (15%)
Query: 302 CGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCC--K 359
C + + +P+++ ++ LNL+ + + + +L +L + K
Sbjct: 11 CSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTR-----YSQLTSLDVGFNTISK 63
Query: 360 LQGTLPRRLLLLETLDITSCDQLLV----TIQCLPALSELQIDGCKRVVFSSPHLVHAVN 415
L+ L ++L +L+ L++ +L T L+EL + + V N
Sbjct: 64 LEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 416 VRE----QAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLE 471
+ ++ + +L L +S + ++ + L+ LE
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNN----KIQALKSEELDIFANS-SLKKLE 177
Query: 472 LSCCEGLTRL-PQALLTLSSLTEMRIHDCASLVSFPQAALP-----SQLRSVVIEECDAL 525
LS + + P + L + +++ L L + +R++ + L
Sbjct: 178 LSSNQ-IKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQ-L 234
Query: 526 ESLPEAWMQN-SNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALESLPEAWM 582
+ ++L L + S N+L + QL + + ++ L +
Sbjct: 235 STTSNTTFLGLKWTNLTMLDL-SYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSL 292
Query: 583 HNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISI 642
H L + +L + + S + + + LE L +++ + I
Sbjct: 293 HG-LFN-VRYLNLKR--SFTKQSISLASLPKIDDFSFQWLKCLEHL--NMEDNDIPGIKS 346
Query: 643 SVLENLKSLPADLHNLHHLQ----KIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA 698
++ L NL +L + N E+F L + L L + +
Sbjct: 347 NMFTGLI-------NLKYLSLSNSFTSLRTLTN-ETF--VSLAHSPLHILNLTKN-KISK 395
Query: 699 L-PNCMHNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGSNRFT 755
+ + L L L + + N+ + + N++
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY------------NKYL 443
Query: 756 SLRRFTIWGGCPDLVSPPPFPASLTNLWISD--MPDLESISSIGENLTSLKTLRLSDCPK 813
L R + P SL L + + +++S S + L +L L LS+
Sbjct: 444 QLTR-NSFALVP----------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-N 491
Query: 814 LKYFSEQGLP--KSLLQLHI 831
+ ++ L + L L +
Sbjct: 492 IANINDDMLEGLEKLEILDL 511
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 85/555 (15%), Positives = 156/555 (28%), Gaps = 110/555 (19%)
Query: 289 LLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFP 347
L L +I + N K+L L+LS G ++
Sbjct: 92 TFAFCTNLTELHL-MSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQL----E 145
Query: 348 KLRTLSLDNCCKLQGTLPR-----RLLLLETLDITSCDQLLV----TIQCLPALSELQID 398
L+ L L N K+Q L+ L+++S Q+ + L L ++
Sbjct: 146 NLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLN 203
Query: 399 GCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQ 458
+ + L + S+ L +S L T
Sbjct: 204 NVQLGPSLTEKLCLELA-----------------NTSIRNLSLSNS----QLSTTSNTTF 242
Query: 459 QQPELPCRLQFLELSCCEGLTRL-PQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSV 517
+ L L+LS L + + L L + ++ L S
Sbjct: 243 LGLKWT-NLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYN-NI---------QHLFSH 290
Query: 518 VIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVAL--PSQLRTIIIGGCHALE 575
+ + L N S +I S SL + + L + + +
Sbjct: 291 SLHGLFNVRYL------NLKRSFTKQSI-SLASLPKIDDFSFQWLKCLEHLNMEDND-IP 342
Query: 576 SLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNT 635
+ L L++L +S S +L + SL + S L L L
Sbjct: 343 GIKSNMFTG-LIN-LKYLSLSN-SFTSLRTLTNETFVSLAH------SPLHIL--NLTKN 391
Query: 636 SLEEISISVLENLKSL---------------PADLHNLHHLQKIWIFGCPNLESFPEEGL 680
+ +I L L + L ++ +I++
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSF 450
Query: 681 PS-TKLTELTIYDC--ENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFP--TNLQSL 735
L L + +N+ + P+ L +L L +S ++ + +D L+ L
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEIL 509
Query: 736 DVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISS 795
D+ N L + GG + L L + E
Sbjct: 510 DLQH------------NNLARLWKHANPGGPIYFLKGLS---HLHILNLESNGFDEIPVE 554
Query: 796 IGENLTSLKTLRLSD 810
+ ++L LK + L
Sbjct: 555 VFKDLFELKIIDLGL 569
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 89/491 (18%), Positives = 157/491 (31%), Gaps = 63/491 (12%)
Query: 292 HLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRT 351
L+ L + P + L L L+ + + E+ +R
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA--NTSIRN 226
Query: 352 LSLDNCCKLQGTLPR-----RLLLLETLDITSCDQLLV----TIQCLPALSELQIDGCKR 402
LSL N +L T + L LD++ L V + LP L ++
Sbjct: 227 LSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 403 VVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPE 462
S L NVR RS T+ + SL + L L + D
Sbjct: 285 QHLFSHSLHGLFNVRY-LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED----- 338
Query: 463 LPCRLQFLELSCCEGLTRLPQALLTLS----SLTEMRIHDCASLVSFPQAALPSQLRSVV 518
+ ++ + GL L L+LS SL + SL S L +
Sbjct: 339 --NDIPGIKSNMFTGLINL--KYLSLSNSFTSLRTLTNETFVSLAH-------SPLHILN 387
Query: 519 IEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALES 576
+ + + +A+ + LE L + + I +
Sbjct: 388 LTKNKISKIESDAFSWLGH--LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQ 444
Query: 577 LPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTS 636
L +P +L+ L + + L + P + L L L L N +
Sbjct: 445 LTRNSFAL-VP-SLQRLMLRRVA----LKNVDSSPSPFQPL-----RNLTIL--DLSNNN 491
Query: 637 LEEISISVLENLKSLPA-DL-HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694
+ I+ +LE L+ L DL HN +L ++W P + +GL L L +
Sbjct: 492 IANINDDMLEGLEKLEILDLQHN--NLARLWKHANPGGPIYFLKGLSH--LHILNLESN- 546
Query: 695 NLKAL-PNCMHNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGS 751
+ +L L + + ++ + P F +L+SL++ I+ +
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605
Query: 752 NRFTSLRRFTI 762
F +L +
Sbjct: 606 PAFRNLTELDM 616
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-12
Identities = 97/578 (16%), Positives = 181/578 (31%), Gaps = 103/578 (17%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNE-IGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPK 348
++ L+ L I + ++ L HL L L+ + G+
Sbjct: 52 FSNFSELQWLDL-SRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSG----LTS 105
Query: 349 LRTLSLDNCC--KLQGTLPRRLLLLETLDITSC----DQLLVTIQCLPALSELQIDGCKR 402
L L L+ +L+ L+ L++ +L L L + +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Query: 403 VVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPE 462
+ L L ++ + L +S P + +++ Q
Sbjct: 166 QTITVNDLQF----------------LRENPQVNLSLDMSLNP----IDFIQDQAFQGI- 204
Query: 463 LPCRLQFLELSCCEGLTRLPQAL------LTLSSLTEMRIHDCASLVSFPQAALPSQLRS 516
+L L L + + + L + L D +L F + + L
Sbjct: 205 ---KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG-LCD 260
Query: 517 VVIEECDALESLPEAWMQNSN----SSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCH 572
V I+E L + +++ +++ S+ +V + +++ I C
Sbjct: 261 VTIDEFR-LTYTNDFSDDIVKFHCLANVSAMSLAG-VSIKYLEDVPKHFKWQSLSIIRCQ 318
Query: 573 ALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC--SKLESLA- 629
L+ P + L+ L ++ ++ + LP SL YL + S +
Sbjct: 319 -LKQFPTLDLPF-----LKSLTLTMN-KGSISFKKVALP-SLSYLDLSRNALSFSGCCSY 370
Query: 630 ERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGL--PSTKLTE 687
L SL + +S + A+ L LQ + L+ E KL
Sbjct: 371 SDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLY 428
Query: 688 LTIYDCENLKALPNCM-HNLTSLLNLKISECPSVVSFPEDGF--PTNLQSLDVHDLKISK 744
L I N K + + LTSL LK++ + + F TNL LD+
Sbjct: 429 LDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS------ 481
Query: 745 PLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGE----NL 800
+ + WG L L L +S ++ + L
Sbjct: 482 ------KCQLEQI----SWGVFDTLH-------RLQLLNMSHN----NLLFLDSSHYNQL 520
Query: 801 TSLKTLRLSDCPKLKYFSE--QGLPKSLLQLHIYACPL 836
SL TL S +++ Q PKSL ++ +
Sbjct: 521 YSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 77/465 (16%), Positives = 152/465 (32%), Gaps = 39/465 (8%)
Query: 275 HFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIF---NLPNEIGNLKHLRCLNLSRTKWE 331
E L S+ + L L+ ++ N LP NL +L ++LS +
Sbjct: 110 VAVETKL-ASLESFPIGQLITLKKLNV--AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 332 EWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR--RLLLLETLDITSCDQLL-VTIQC 388
I Q + E +L + + + + + L L + + C
Sbjct: 167 T-ITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Query: 389 LPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQ----DIRSLNWLQISRC 444
L L+ L + F + + + S + ++
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284
Query: 445 PQLISLVTVEEHDQQQPELP--CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASL 502
+ ++ + ++P + Q L + C+ L + P L L L + +
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFP--TLDLPFLKSLTLTMNKGS 341
Query: 503 VSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP-S 561
+SF + ALPS L + + S ++ +SL L + S N + +
Sbjct: 342 ISFKKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL-SFNGAIIMSANFMGLE 399
Query: 562 QLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRN--GNLPQSLKYLKI 619
+L+ + L+ + E L L +L++SY N + L SL LK+
Sbjct: 400 ELQHLDFQHST-LKRVTEFSAFLSLE-KLLYLDISYT-NTKIDFDGIFLGLT-SLNTLKM 455
Query: 620 EDCSKLESLAERL--DNTSLEEISISVLEN-LKSLPAD-LHNLHHLQKIWIFGCPNLESF 675
S ++ + + T+L + +S + L+ + LH LQ + + NL
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLS--KCQLEQISWGVFDTLHRLQLLNMSHN-NLLFL 512
Query: 676 PEEGLPS-TKLTELTIYDCENLKALPNC-MHNLTSLLNLKISECP 718
L+ L ++ H SL ++
Sbjct: 513 DSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 47/311 (15%), Positives = 97/311 (31%), Gaps = 62/311 (19%)
Query: 574 LESLPEAWMHNELPATLEHLEVSYCSNLALLSRN--GNLPQSLKYLKIEDC--------- 622
L +P+ ++P++ +++++S+ L +L N + L++L + C
Sbjct: 23 LSKVPD-----DIPSSTKNIDLSFN-PLKILKSYSFSNFSE-LQWLDLSRCEIETIEDKA 75
Query: 623 ----SKLESLAERLDNTSLEEISISVLENLKSL--------------PADLHNLHHLQKI 664
L +L L ++ S L SL + L L+K+
Sbjct: 76 WHGLHHLSNL--ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133
Query: 665 WIFGCPNLESFPEEGL--PSTKLTELTIYDCENLKALPNCM-----HNLTSLLNLKISEC 717
+ + S T L + + ++ + N L+L +S
Sbjct: 134 NVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLN 191
Query: 718 PSVVSFPEDGF-PTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWG----GCPDLVSP 772
P + + F L L + S +++ L + +L
Sbjct: 192 P-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250
Query: 773 PP-FPASLTNLWISDMPDLE--SISSIG----ENLTSLKTLRLSDCPKLKYFSEQGLPKS 825
P L ++ I + L + S L ++ + L+ +KY +
Sbjct: 251 EPSIMEGLCDVTIDEF-RLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFK 308
Query: 826 LLQLHIYACPL 836
L I C L
Sbjct: 309 WQSLSIIRCQL 319
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 52/367 (14%), Positives = 115/367 (31%), Gaps = 48/367 (13%)
Query: 289 LLNHLPRLRVFSLCGYRN--IFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVF 346
++ L + + + + L ++ ++L+ + +
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPK------H 306
Query: 347 PKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCD-QLLVTIQCLPALSELQIDGCK--RV 403
K ++LS+ C+L+ L L++L +T + LP+LS L +
Sbjct: 307 FKWQSLSIIR-CQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS 365
Query: 404 VFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQ--------ISRCPQLISLVTVEE 455
S + ++R + + + L LQ + R + +
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF----- 420
Query: 456 HDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAAL--PSQ 513
L +L +L++S L L+SL +++ + + +
Sbjct: 421 -----LSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474
Query: 514 LRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGC 571
L + + +C LE + L+ L + S N+L+ L T+
Sbjct: 475 LTFLDLSKCQ-LEQISWGVFDTL-HRLQLLNM-SHNNLLFLDSSHYNQLYSLSTLDCSFN 531
Query: 572 HALESLPEAWMHNELPATLEHLEVSY------CSNLALLSRNGNLPQSLKYLKIEDCSKL 625
+E+ H P +L ++ C + L Q L ++ C+
Sbjct: 532 R-IETSKGILQHF--PKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATP 588
Query: 626 ESLAERL 632
+ L
Sbjct: 589 VEMNTSL 595
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 3e-11
Identities = 64/475 (13%), Positives = 141/475 (29%), Gaps = 69/475 (14%)
Query: 386 IQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCP 445
+ P L L++ G R + + T + ++R L + R
Sbjct: 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVT-----PWVTEISNNLRQLKSVHFRRMI 123
Query: 446 QLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTR--LPQALLTLSSLTEMRIHDC---- 499
V+ + D+ L+ L+L C G T L + + + + +
Sbjct: 124 -----VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178
Query: 500 ---ASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE 556
L Q ++ + + E + + + SL + + L
Sbjct: 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238
Query: 557 VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKY 616
+ L G + +PE +M+ P L L +SY + ++
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA-QIRK 297
Query: 617 LKIEDCSKL-ESLAERLDN-TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLES 674
L + E + +LE + + + L L+++ I + +
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357
Query: 675 FPEEGLPST------------KLTELTIYDC----ENLKALPNCMHNLTSLLNLKISECP 718
+E + +L + +Y E+L+++ + NL + +
Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417
Query: 719 SVVSFPED-GFP------TNLQSLDVHDL--KISKPLLEWGSNRFTSLRRFTIWG----- 764
+ P D G L+ + ++ L + ++R +
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477
Query: 765 --------GCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDC 811
GCP+L + S+ +I++ L SL+ L +
Sbjct: 478 EGLMEFSRGCPNLQK-----LEMRGCCFSE----RAIAAAVTKLPSLRYLWVQGY 523
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 3e-11
Identities = 66/495 (13%), Positives = 140/495 (28%), Gaps = 43/495 (8%)
Query: 273 LSHFDENYLAWSVLQMLLNHLPRLRVFSL--CGYRNIFNLPNEIGNLKHLRCLNLSRTKW 330
L + + + N+L +L+ ++ L L L +
Sbjct: 91 LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150
Query: 331 EEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGT------LPRRLLLLETLDITSCDQLLV 384
+ K++TL ++ + L + LE L+ + +
Sbjct: 151 ---FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI 207
Query: 385 TIQCL-------PALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLN 437
+ + L +L +++ + + A + +P+ +L
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL- 266
Query: 438 WLQISRCPQLISLVTVEEHDQQQPEL---PCRLQFLELSCCEGLT-RLPQALLTLSSLTE 493
+L L + P L +++ L+L T + +L
Sbjct: 267 ----VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322
Query: 494 MRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSL- 551
+ + A QL+ + IE + + + S L LA + C L
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA-QGCQELE 381
Query: 552 ---VSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNG 608
V ++ S L +I L + E T L+ S L +
Sbjct: 382 YMAVYVSDITNES-LESIG-TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439
Query: 609 NLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENL-KSLPADLHNLHHLQKIWIF 667
L+ + D L + + N + + + + + L +LQK+ +
Sbjct: 440 RFAFYLRQGGLTDLG-LSYIGQYSPN--VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496
Query: 668 GCPNLESFPEEGLPS-TKLTELTIYDCENLKALPNCMHNLTSLLNLKI---SECPSVVSF 723
GC E + L L + + M N+++ P V
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQ 556
Query: 724 PEDGFPTNLQSLDVH 738
E + + +
Sbjct: 557 GEIREMEHPAHILAY 571
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 7e-08
Identities = 50/365 (13%), Positives = 100/365 (27%), Gaps = 70/365 (19%)
Query: 468 QFLELSCCEGLTRLPQALLTLSSLTEMRIHDC-----ASLVSFPQAALPSQLRSVVIEEC 522
+ + ++ C T + +L +++ +L+ + + +
Sbjct: 53 EHVTMALCYTAT-PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL 111
Query: 523 DALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWM 582
L+S+ M S+ L+ LA L T+ + C +
Sbjct: 112 RQLKSVHFRRMIVSDLDLDRLAKARA------------DDLETLKLDKCSGFTT------ 153
Query: 583 HNELPATLEHLEVSYCSNLALLSRNGNL-----PQSLKYLKIEDCSKLESLAERLDNTSL 637
L + V++C + L + + L L + + LE L T
Sbjct: 154 -----DGLLSI-VTHCRKIKTLLMEESSFSEKDGKWLHEL-AQHNTSLEVL--NFYMTEF 204
Query: 638 EEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK 697
+IS LE + N L + + L + L E
Sbjct: 205 AKISPKDLETI------ARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDI 257
Query: 698 ALPNCMHNLTSLLNLKISECPSVV--SFPEDG-FPTNLQSLDVHDLKISKPLLEWGSNRF 754
+P NL L + P F ++ LD+ +
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH------- 310
Query: 755 TSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKL 814
T+ CP +L L ++ + + + LK LR+
Sbjct: 311 -----CTLIQKCP----------NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADE 355
Query: 815 KYFSE 819
+ +
Sbjct: 356 QGMED 360
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 4e-11
Identities = 69/417 (16%), Positives = 137/417 (32%), Gaps = 55/417 (13%)
Query: 286 LQMLLNHLPRLRVFSLCGYRNIFN--LPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVD 343
L+++ +V L L ++L+ L+L + ++ +
Sbjct: 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD-VSGHWLSHFP 180
Query: 344 EVFPKLRTLSLDNCCKLQG-----TLPRRLLLLETLDITSC---DQLLVTIQCLPALSEL 395
+ + L +L++ L R L++L + ++L +Q P L EL
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240
Query: 396 QIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQI----------SRCP 445
G V P + ++ +++R L+ S C
Sbjct: 241 GTGGYTAEV--RPDVYSGLS---------VALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289
Query: 446 QLISL------VTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDC 499
+L +L V + + + P +LQ L + L T L E+R+
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCP-KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348
Query: 500 ASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVAL 559
V P AL Q V C LES+ Q +N++L +A R+ ++ F +
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-RNRPNMTRFRLCII 407
Query: 560 PSQLRTIIIGGC--HALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYL 617
+ + ++ E L L +S + G + ++ L
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKD------LRRLSLSGLLTDKVFEYIGTYAKKMEML 461
Query: 618 KIEDCSK----LESLAERLDNTSLEEISISVLENL-KSLPADLHNLHHLQKIWIFGC 669
+ + + SL ++ I K+L A+ L ++ +W+ C
Sbjct: 462 SVAFAGDSDLGMHHVLSGC--DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 82/542 (15%), Positives = 150/542 (27%), Gaps = 99/542 (18%)
Query: 286 LQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEV 345
++ P++R L G + + NL E
Sbjct: 58 PATVIRRFPKVRSVELKGKPHFADF-----NLVPDGWGGYVYPWIEAMSSS--------- 103
Query: 346 FPKLRTLSLDNCC---KLQGTLPRRLLLLETLDITSCDQL----LVTI-QCLPALSELQI 397
+ L + L + + + L ++SC+ L I L EL +
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163
Query: 398 DGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHD 457
S L H P SL L IS +S +E
Sbjct: 164 RESDVDDVSGHWLSH----------------FPDTYTSLVSLNISCLASEVSFSALERLV 207
Query: 458 QQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSV 517
+ P L+ L+L+ L +L L L E+ + V + S
Sbjct: 208 TRCP----NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR-------PDVYSG 256
Query: 518 VIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESL 577
+ + L L L + V S+L T+ +
Sbjct: 257 LSVALSGCKEL---------RCLSGFWDAVPAYLPAVYSVC--SRLTTLNLSYATVQSYD 305
Query: 578 PEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAE-RLDNTS 636
+ + P L+ L V A L + + L+ L++ L
Sbjct: 306 LVK-LLCQCPK-LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363
Query: 637 LEEISISVLENLKSLPADLHN-----LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691
L +S+ L+S+ L + + PN+ F + LT+
Sbjct: 364 LVSVSMG-CPKLESVLYFCRQMTNAALITIAR----NRPNMTRFRLCIIEPKAPDYLTLE 418
Query: 692 DC-ENLKALPNCMHNLTSLLNLKISECPSVVSFPEDG-FPTNLQSLDVHDLKISKPLLEW 749
A+ +L L +S + F G + ++ L V S +
Sbjct: 419 PLDIGFGAIVEHCKDLRRL---SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH- 474
Query: 750 GSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLS 809
+ GC L + + D +++ + L ++++L +S
Sbjct: 475 -----------HVLSGCDSLRK-----LEIRDCPFGD----KALLANASKLETMRSLWMS 514
Query: 810 DC 811
C
Sbjct: 515 SC 516
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 42/269 (15%), Positives = 76/269 (28%), Gaps = 43/269 (15%)
Query: 590 LEHLEVSYCSNL--ALLSRNGNLPQSLKYLKIEDCSK-------LESLAERLDNTSLEEI 640
+ L +S C L+ ++LK L + + L + TSL +
Sbjct: 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY--TSLVSL 189
Query: 641 SISVLENL---KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN-- 695
+IS L + +L + +L+ + + LE + +L EL
Sbjct: 190 NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249
Query: 696 ----LKALPNCMHNLTSLLNLKISECPSVVSFPEDG-FPTNLQSLDVHDLKISKPLLEWG 750
L + L L P + L +L++ + L
Sbjct: 250 RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV-- 307
Query: 751 SNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSD 810
+ CP L LW+ D + + + L+ LR+
Sbjct: 308 ----------KLLCQCP----------KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347
Query: 811 CPKLKYFSEQGLPKSLLQLHIYACPLIEE 839
L + L CP +E
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLES 376
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 61/368 (16%), Positives = 108/368 (29%), Gaps = 63/368 (17%)
Query: 284 SVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSR-TKWEEWIPCGAGQEV 342
S L+ L+ P L+ L + L + L L T
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260
Query: 343 DEVFPKLRTLSLDNCCKLQG--TLPRRLLLLETLDITSC----DQLLVTIQCLPALSELQ 396
+LR LS + L TL+++ L+ + P L L
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320
Query: 397 I------DGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQD------IRSLNWLQ--IS 442
+ G + + + L + V F + L+ +
Sbjct: 321 VLDYIEDAGLEVLASTCKDLRE-LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379
Query: 443 RCPQL--ISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLP-----QALL-TLSSLTEM 494
C Q+ +L+T+ + RL +E + LT P A++ L +
Sbjct: 380 FCRQMTNAALITIARNRPNMTRF--RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437
Query: 495 RIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSF 554
+ + F + +E L A+ +S+ + + C+SL
Sbjct: 438 SLSGLLTDKVF----------EYIGTYAKKMEMLSVAFAGDSDLGMHHVL-SGCDSL--- 483
Query: 555 PEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNG--NLPQ 612
R + I C + A L T+ L +S CS +S L Q
Sbjct: 484 ---------RKLEIRDCPFGDKALLANASK-LE-TMRSLWMSSCS----VSFGACKLLGQ 528
Query: 613 SLKYLKIE 620
+ L +E
Sbjct: 529 KMPKLNVE 536
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 55/264 (20%), Positives = 95/264 (35%), Gaps = 21/264 (7%)
Query: 461 PELPCRLQFLELSC-CEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALP--SQLRSV 517
C C +T +P L + E+R L + A L +
Sbjct: 3 HHRICHCSNRVFLCQESKVTEIPSDLPR--NAIELRFVLT-KLRVIQKGAFSGFGDLEKI 59
Query: 518 VIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALE 575
I + D LE + N L + I N+L+ A L+ ++I ++
Sbjct: 60 EISQNDVLEVIEADVFSN-LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IK 117
Query: 576 SLPEAWMHNELPATLEHLEVSYCSNLALLSRN--GNLPQSLKYLKIEDCSKLESLAER-L 632
LP+ + L L++ N+ + RN L L + ++ +
Sbjct: 118 HLPDVHKIHSL--QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF 174
Query: 633 DNTSLEEISISVLENLKSLPAD-LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691
+ T L+E+++S NL+ LP D H + I + S P GL L +L
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGL--ENLKKLRAR 231
Query: 692 DCENLKALPNCMHNLTSLLNLKIS 715
NLK LP + L +L+ ++
Sbjct: 232 STYNLKKLPT-LEKLVALMEASLT 254
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 48/249 (19%), Positives = 71/249 (28%), Gaps = 58/249 (23%)
Query: 597 YCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLH 656
C + +LP++ L R T L I
Sbjct: 15 LCQESKVTEIPSDLPRNAIEL-------------RFVLTKLRVIQ----------KGAFS 51
Query: 657 NLHHLQKIWIFGCPNLESFPEE---GLPSTKLTELTIYDCENLKALPNCM-HNLTSLLNL 712
L+KI I LE + LP KL E+ I NL + NL +L L
Sbjct: 52 GFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRIEKANNLLYINPEAFQNLPNLQYL 109
Query: 713 KISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770
IS + P+ LD+ D ++ R + G
Sbjct: 110 LISNTG-IKHLPDVHKIHSLQKVLLDIQDN-----------INIHTIERNSFVG------ 151
Query: 771 SPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE---QGLPKSLL 827
LW++ ++ I + N T L L LSD L+ G +
Sbjct: 152 ----LSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPV 205
Query: 828 QLHIYACPL 836
L I +
Sbjct: 206 ILDISRTRI 214
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 105/592 (17%), Positives = 186/592 (31%), Gaps = 116/592 (19%)
Query: 269 LPMELSHFD--ENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNE-IGNLKHLRCLNL 325
LP + D N L + P L+V L I + + +L HL L L
Sbjct: 26 LPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 326 SRTKWEEWIPCGAGQEVDEVF---PKLRTLSLDNC--CKLQGTLPRRLLLLETLD----- 375
+ + + F L+ L L+ L L+ L+
Sbjct: 84 TGNPIQS-LA-------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 376 ITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRS 435
I S L L L L + K L L Q
Sbjct: 136 IQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDL----------------RVLHQMPLL 178
Query: 436 LNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL------LTLS 489
L +S P + ++ ++ RL L L + + L +
Sbjct: 179 NLSLDLSLNP----MNFIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 490 SLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIR--- 546
L + +L F ++AL L ++ IEE L L + +
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEG-LCNLTIEEFR-LAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 547 -SCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLS 605
++ + + + + + C P + + L+ L +
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCK-FGQFPTLKLKS-----LKRLTFTSN-KGGNAF 341
Query: 606 RNGNLPQSLKYLKIEDC--SKLESLAERLDN-TSLEEISISVLEN-LKSLPADLHNLHHL 661
+LP SL++L + S ++ TSL+ + +S N + ++ ++ L L
Sbjct: 342 SEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS--FNGVITMSSNFLGLEQL 398
Query: 662 QKIWIFGCPNLESFPEEGL--PSTKLTELTIYDCENLKALPNCM-HNLTSLLNLKISECP 718
+ + NL+ E + L L I + + N + + L+SL LK++
Sbjct: 399 EHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 719 SVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFP 776
+F D F NL LD+ + L P
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQ------------CQLEQL--------------SPTAF 490
Query: 777 ASLTNLWISDMPD--LESI-SSIGENLTSLKTLRLS------DCPKLKYFSE 819
SL++L + +M L+S+ I + LTSL+ + L CP++ Y S
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 74/428 (17%), Positives = 138/428 (32%), Gaps = 70/428 (16%)
Query: 461 PELPCRLQFLELSCCEGLTRLPQALLT-LSSLTEMRIHDCASLVSFPQAALP--SQLRSV 517
LP + L+LS L L L + + C + + A S L ++
Sbjct: 24 DNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTL 81
Query: 518 VIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALE 575
++ ++SL SSL+ L +L S + L+ + + ++
Sbjct: 82 ILTGN-PIQSLALGAFSG-LSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQ 137
Query: 576 SLPEAWMHNELPATLEHLEVSYCS----NLALLSRNGNLPQSLKYLKIEDCSKLESLAER 631
S + L LEHL++S L +P L +
Sbjct: 138 SFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 632 LDNTSLEEISISVLENLKSLPAD-LHNLHHLQKIW-----IFGCPNLESFPE---EGLPS 682
L ++++ + ++ + L L+ NLE F + EGL +
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 683 TKLTELTI----YDCENLKALPNCMHNLT--SLLNLKISECPSVVSFPEDGFPTNLQSLD 736
+ E + Y +++ L NC+ N++ SL+++ I + Q L+
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS------YNFGWQHLE 310
Query: 737 VHDLKISK---------PLLEWGSNRFTSLRRFTIWGGCPDL------------VSPPPF 775
+ + K + L + SN+ + P L
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 776 ----PASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL---PKSLLQ 828
SL L +S + ++SS L L+ L LK SE + ++L+
Sbjct: 368 SDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIY 425
Query: 829 LHIYACPL 836
L I
Sbjct: 426 LDISHTHT 433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 53/278 (19%), Positives = 86/278 (30%), Gaps = 59/278 (21%)
Query: 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENL 648
+ ++ C L NLP S K L L L + +
Sbjct: 6 VVPNITY-QCMELNFYKIPDNLPFSTKNL-------------DLSFNPLRHLGSYSFFSF 51
Query: 649 KSL--------------PADLHNLHHLQKIWIFGCPNLESFPEEGL-PSTKLTELTIYDC 693
L +L HL + + G P ++S + L +L +
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 110
Query: 694 ENLKALPN-CMHNLTSL--LNL---KISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLL 747
NL +L N + +L +L LN+ I F TNL+ LD+ KI
Sbjct: 111 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN---LTNLEHLDLSSNKIQSIY- 165
Query: 748 EWGSNRFTSLRRFTIWGGCPDL-------VSPPPFPA-SLTNLWISD-MPDLESISSIGE 798
L + + DL + P F L L + + L + + +
Sbjct: 166 ---CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
Query: 799 NLTSLKTLRLS-----DCPKLKYFSEQGLPKSLLQLHI 831
L L+ RL + L+ F + + L L I
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTI 259
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 4e-10
Identities = 91/569 (15%), Positives = 175/569 (30%), Gaps = 106/569 (18%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNEI-GNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVF-- 346
L +L++ L + E NL +LR L+L +K ++ + F
Sbjct: 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLH-------PDAFQG 95
Query: 347 -PKLRTLSLDNCC----KLQGTLPRRLLLLETLDITSCD----QLLVTIQCLPALSELQI 397
L L L C L+ R L L LD++ L + L +L +
Sbjct: 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 398 DGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHD 457
+ + L P ++L++ ++ L S V+V+
Sbjct: 156 SSNQIFLVCEHEL------------------EPLQGKTLSFFSLAAN-SLYSRVSVDWGK 196
Query: 458 QQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSV 517
P L+ L++S + + S L +
Sbjct: 197 CMNPFRNMVLEILDVSGNG-----------WTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 518 VIEECDALESLPEAWMQN-SNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHAL 574
+ ++ + + SS+ L + S + S L+ + + +
Sbjct: 246 GFGFHN-IKDPDQNTFAGLARSSVRHLDL-SHGFVFSLNSRVFETLKDLKVLNLAYNK-I 302
Query: 575 ESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDN 634
+ + + L++L+V S NL L K+ + L
Sbjct: 303 NKIADEAFYG-----LDNLQVLNLSY--------NLLGELYSSNFYGLPKVAYI--DLQK 347
Query: 635 TSLEEISISVLENLKSLP---------ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKL 685
+ I + L+ L +H + + I L + P+ L + +
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI-FLSGNKLVTLPKINLTANLI 406
Query: 686 TELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKP 745
L+ ENL L + + L L +++ S D P+ SL+ L +
Sbjct: 407 -HLSENRLENLDILY-FLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQ--LFLG-- 459
Query: 746 LLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPD--LESIS-SIGENLTS 802
N + L++L + + L S+ + +LT+
Sbjct: 460 -----ENMLQLAWETEL---------CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505
Query: 803 LKTLRLSDCPKLKYFSEQGLPKSLLQLHI 831
L+ L L+ +L S LP +L L I
Sbjct: 506 LRGLSLNSN-RLTVLSHNDLPANLEILDI 533
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 73/420 (17%), Positives = 137/420 (32%), Gaps = 88/420 (20%)
Query: 466 RLQFLELSCCEGLTRLP-QALLTLSSLTEMRIHDCASLVSFPQAALPS------------ 512
LQ L + E + + L+SL E+ I SL ++ +L S
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLS 182
Query: 513 QLRSVVIEECDALESLPEAWMQNSN------SSLECLAIRSCNSLVSFPEVALPSQLRTI 566
+ ++ D L S+ ++++N S L + S ++F L +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242
Query: 567 IIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIED----- 621
++ + L E + L S ++ L + + +++ L I
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV--TIRRLHIPQFYLFY 300
Query: 622 --------CSKLESLAERLDNTSLEEISISVLENLKSL-----------------PADLH 656
K++ + ++N+ + + S ++LKSL A
Sbjct: 301 DLSTVYSLLEKVKRI--TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358
Query: 657 NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN--LKALPNCMHNLTSLLNLKI 714
LQ + + +L S + G L LT D +P+ + L +
Sbjct: 359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417
Query: 715 SECPSVVSFPEDGFPTNLQSLDVHDLKISK-----PLLEW---GSNRFTSLRRFTIWGGC 766
S + P L+ LDV + + P L+ N+ +L
Sbjct: 418 SST-GIRVVK-TCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL--------- 466
Query: 767 PDLVSPPPFPASLTNLWISDMPDLESIS-SIGENLTSLKTLRLS------DCPKLKYFSE 819
L + IS L+S+ I + LTSL+ + L CP++ Y S
Sbjct: 467 ----PDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 73/450 (16%), Positives = 131/450 (29%), Gaps = 74/450 (16%)
Query: 289 LLNHLPRLRVFSLCGYRNIFNLPNE-IGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFP 347
L +L L+ + + L L L + + +
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQS----LKSIR 172
Query: 348 KLRTLSLDNC--CKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVF 405
+ L+L L L + L++ + L Q P + K++ F
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN--LARFQFSPLPVDEVSSPMKKLAF 230
Query: 406 SSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPC 465
L + +L + I L+ ++ C EL
Sbjct: 231 RGSVLTDES--------FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
Query: 466 ----RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAA---LPS------ 512
++ L + L L + + + + + P + L S
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDL 341
Query: 513 ---QLRSVVIEECDALESLP-----------------EAWMQNSNSSLECLAIRSCNSLV 552
+ ++ + P + + +L L I S N+
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI-SRNTFH 400
Query: 553 SFPE-VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLP 611
P+ P ++R + + + + +P TLE L+VS + L S + LP
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTG-IRVVK-----TCIPQTLEVLDVSNNN---LDSFSLFLP 451
Query: 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLEN-LKSLPAD-LHNLHHLQKIWIFGC 669
L+ L I KL++L + L + IS N LKS+P L LQKIW+
Sbjct: 452 -RLQELYISRN-KLKTLPDASLFPVLLVMKIS--RNQLKSVPDGIFDRLTSLQKIWLHTN 507
Query: 670 P-----NLESFPEEGLPSTKLTELTIYDCE 694
P + L E C
Sbjct: 508 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 537
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 77/473 (16%), Positives = 143/473 (30%), Gaps = 75/473 (15%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNE-IGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPK 348
L L L ++ +L + G L L+ LNL ++
Sbjct: 70 FYSLGSLEHLDL-SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN----LTN 124
Query: 349 LRTLSLDNCCKLQGTLPRRLLL----LETLDITSCDQLLVTIQC-----LPALSELQIDG 399
L+TL + N + R L L+I + L Q + + L +
Sbjct: 125 LQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALS--LRNYQSQSLKSIRDIHHLTLHL 181
Query: 400 CKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQ 459
+ +VR L +L Q S P +++
Sbjct: 182 SESAFLLEIFADILSSVRY----------LELRDTNLARFQFSPLPVDEVSSPMKK---- 227
Query: 460 QPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVI 519
L R L L +L + +L L+E+ DC L
Sbjct: 228 ---LAFRGSVLTDESFNELLKLLRYIL---ELSEVEFDDCTLN----------GLGDFNP 271
Query: 520 EECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEV-ALPSQLRTIIIGGCHALESLP 578
E D + L + ++ L I V +L +++ I + + +P
Sbjct: 272 SESDVVSELG----KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP 326
Query: 579 EAWMHNELPATLEHLEVSYCSNLALLSRN----GNLPQSLKYLKIEDC--SKLESLAERL 632
+ L +LE L++S + +N G P SL+ L + ++ E L
Sbjct: 327 CS-FSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEIL 383
Query: 633 DN-TSLEEISISVLEN-LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690
+L + IS N +P ++ + + + + L L +
Sbjct: 384 LTLKNLTSLDIS--RNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQT--LEVLDV 438
Query: 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743
+ NL + L L L IS + + P+ L + + ++
Sbjct: 439 SNN-NLDSFSL---FLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 40/254 (15%), Positives = 74/254 (29%), Gaps = 58/254 (22%)
Query: 598 CSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL------ 651
+ + S L ++K L L + I L +L
Sbjct: 12 GRSRSFTSIPSGLTAAMKSL-------------DLSFNKITYIGHGDLRACANLQVLILK 58
Query: 652 --------PADLHNLHHLQKIWIFGCPNLESFPEEGL-PSTKLTELTIYDCENLKALPNC 702
++L L+ + + +L S P + L L + + L
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVT 116
Query: 703 M--HNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGSNRFTSLR 758
NLT+L L+I + F T+L L++ L + + S S+R
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQS--LKSIR 172
Query: 759 RFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFS 818
+ +L + + + L+S++ L L D L F
Sbjct: 173 -------------------DIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQ 212
Query: 819 EQGLPKSLLQLHIY 832
LP + +
Sbjct: 213 FSPLPVDEVSSPMK 226
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 51/376 (13%), Positives = 113/376 (30%), Gaps = 64/376 (17%)
Query: 461 PELPCRLQFLELSCCEGLTRLP-QALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVI 519
L ++ L+LS + +T + L ++L + + ++ ++
Sbjct: 22 SGLTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-------------RINTI-- 65
Query: 520 EECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALESL 577
E DA SL SLE L + N L S S L+ + + G ++L
Sbjct: 66 -EGDAFYSLG---------SLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNP-YQTL 113
Query: 578 PEAWMHNELPATLEHLEVSYCSNLALLSRN--GNLPQSLKYLKIEDCSKLESLAERLDNT 635
+ L L+ L + + + R L SL L+I+ L
Sbjct: 114 GVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKA-LSL---------R 161
Query: 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN 695
+ + S+ + ++ L L L +I+ ++ + + E
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221
Query: 696 LKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFT 755
+ + L + +E ++ + + ++ L P +
Sbjct: 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281
Query: 756 SLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLK 815
+ ++ L I +S++ L +K + + + K+
Sbjct: 282 KVETV-----------------TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVF 323
Query: 816 YFSEQGLPKSLLQLHI 831
+ L L
Sbjct: 324 LVPC-SFSQHLKSLEF 338
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 78/422 (18%), Positives = 134/422 (31%), Gaps = 81/422 (19%)
Query: 467 LQFLELSCCEGLTRL-PQALLTLSSLTEMRIHDCASLVSFPQAAL--PSQLRSVVIEECD 523
L FL+L+ C+ + + + L + + L+ + AL P L+ + +
Sbjct: 59 LTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQT- 115
Query: 524 ALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALESLPEAW 581
+ S+ + N +LE L + N + S +L+ + + L +
Sbjct: 116 GISSIDFIPLHNQ-KTLESLYL-GSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKED 172
Query: 582 MHNELPATLEHLEVSY------------CSNLALL--SRNGNLPQSLKYLKIEDCSKLES 627
M + AT L ++ + L NL K LK L
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232
Query: 628 LAERLDNTSLEEISISVLENLKSL----------------PADLHNLHHLQKIWIFGCPN 671
++ E+IS +V E L + H LQ++ + +
Sbjct: 233 G--TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-H 289
Query: 672 LESFPEEGLPSTKLTELTIYDCENLKALPNCM-HNLTSLLNLKISECPSVVSFPEDGFP- 729
L P + + L +L + + L N SL +L I +
Sbjct: 290 LSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348
Query: 730 -TNLQSLDVHDLKISKPLLEWGS--------------NRFTSLRRFTIWGGCPDLVSPPP 774
NL+ LD+ I N SL+ + CP
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECP------- 400
Query: 775 FPASLTNLWISDMPDLESISSIG--ENLTSLKTLRLSDCPKLKYFSE---QGLPKSLLQL 829
L L ++ L+ + +NL LK L LS L SE GLP +L L
Sbjct: 401 ---QLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLP-ALQHL 454
Query: 830 HI 831
++
Sbjct: 455 NL 456
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 89/553 (16%), Positives = 158/553 (28%), Gaps = 104/553 (18%)
Query: 311 PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVF---PKLRTLSLDNCCKLQGTLP-- 365
L +L L+L+R + + F +L TL L L
Sbjct: 50 NTTFSRLINLTFLDLTRCQIYWIHE--------DTFQSQHRLDTLVLTA-NPLIFMAETA 100
Query: 366 -RRLLLLETLDITSCDQLLV----TIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQA 420
L+ L + + L L + P
Sbjct: 101 LSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG---------- 149
Query: 421 YFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHD-QQQPELPCRLQFLELSCCEGLT 479
L L ++ + + D + L L+ + +
Sbjct: 150 ----------FPTEKLKVLDFQNN----AIHYLSKEDMSSLQQA--TNLSLNLNGND-IA 192
Query: 480 RLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQ---LRSVVIEECDALESLPEAWMQNS 536
+ + + +L+ + S L E+ D + P +
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252
Query: 537 NSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALESLPEAWMHNELPATLEHLE 594
S+E + + + + S L+ + + H L LP + TL+ L
Sbjct: 253 EMSVESINL-QKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLS---TLKKLV 307
Query: 595 VSYCSNLALLSRN--GNLPQSLKYLKIEDCSKLESLAERL--DNTSLEEISIS--VLENL 648
+S L + N P SL +L I+ +K L + +L E+ +S +E
Sbjct: 308 LSAN-KFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 649 KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPS-TKLTELTIYDCENLKAL--PNCMHN 705
L NL HLQ + + S E +L L + LK + N
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQN 423
Query: 706 LTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIW 763
L L L +S + E F LQ L++ N F
Sbjct: 424 LHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQG------------NHFPK-----GN 465
Query: 764 GGCPDLVSPPPFPASLTNLWISDMPDLESISSIGE----NLTSLKTLRLSDCPKLKYFSE 819
+ + L L +S +SSI + +L + + LS +L S
Sbjct: 466 IQKTNSLQTLG---RLEILVLSFC----DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSI 517
Query: 820 QGLPK-SLLQLHI 831
+ L + L++
Sbjct: 518 EALSHLKGIYLNL 530
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 52/353 (14%), Positives = 101/353 (28%), Gaps = 74/353 (20%)
Query: 534 QNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHL 593
+ N + C L P LP+ + L ++ L L L
Sbjct: 11 KEVNKTYNC----ENLGLNEIPG-TLPNSTECLEFSFNV-LPTIQNTTFSR-LIN-LTFL 62
Query: 594 EVSYCSNLALLSRN--GNLPQSLKYLKIED-------------CSKLESLAERLDNTSLE 638
+++ C + + + + + L L + L+ L T +
Sbjct: 63 DLTRC-QIYWIHEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHL--FFIQTGIS 118
Query: 639 EISISVLENLKSL--------------PADLHNLHHLQKIWIFGCPNLESFPEEGLPS-T 683
I L N K+L L+ + + +E + S
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQ 177
Query: 684 KLTELTIYDCEN-LKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKI 742
+ T L++ N + + + +L +++ + + +QSL + +
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE- 236
Query: 743 SKPLLEWGSNRFTSLRRFTIWGGCP------DL-------VSPPPFP--ASLTNLWISDM 787
+ G C +L +S F + L L ++
Sbjct: 237 --------DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 788 PDLESISSIGENLTSLKTLRLSDCPKLKYFSE---QGLPKSLLQLHIYACPLI 837
L + S L++LK L LS K + + P SL L I
Sbjct: 289 -HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFP-SLTHLSIKGNTKR 338
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 57/302 (18%), Positives = 100/302 (33%), Gaps = 46/302 (15%)
Query: 547 SCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSR 606
+ S V + L I L + + + L +
Sbjct: 54 DRLGIKSIDGVEYLNNLTQINFSNNQ-LTDITP---------------LKNLTKLVDILM 97
Query: 607 NGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEIS-ISVLENLKSL---------PADLH 656
N N + L + + L L L N + +I + L NL L + L
Sbjct: 98 NNNQIADITPLA--NLTNLTGL--TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 153
Query: 657 NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISE 716
L LQ++ G + P L T L L I + + + LT+L +L +
Sbjct: 154 GLTSLQQLSF-GNQVTDLKPLANL--TTLERLDISSN-KVSDISV-LAKLTNLESLIATN 208
Query: 717 CPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFP 776
+ G TNL L ++ ++ T+L + + + P
Sbjct: 209 N-QISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDL-ANNQ-ISNLAPLS 262
Query: 777 --ASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYAC 834
LT L + + +IS + LT+L L L++ +L+ S K+L L +Y
Sbjct: 263 GLTKLTELKLGANQ-ISNISPLA-GLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319
Query: 835 PL 836
+
Sbjct: 320 NI 321
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 49/273 (17%), Positives = 98/273 (35%), Gaps = 53/273 (19%)
Query: 562 QLRTII-IGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIE 620
+ I + G +L+ L N++ + ++ + L L + N + +
Sbjct: 145 TISDISALSGLTSLQQL---SFGNQV---TDLKPLANLTTLERLDISSNKVSDIS--VLA 196
Query: 621 DCSKLESLAERLDNTSLEEIS-ISVLENLKSL---------PADLHNLHHLQKIWIFGCP 670
+ LESL N + +I+ + +L NL L L +L +L + +
Sbjct: 197 KLTNLESL--IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN- 253
Query: 671 NLESFPE-EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFP 729
+ + GL TKLTEL + + + + LT+L NL+++E +
Sbjct: 254 QISNLAPLSGL--TKLTELKLGAN-QISNISP-LAGLTALTNLELNENQ-LEDISPISNL 308
Query: 730 TNLQSLDVHDLKISK-------PLLEW---GSNRFTSLRRFTIWGGCPDLVSPPPFPASL 779
NL L ++ IS L+ +N+ + + ++
Sbjct: 309 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA-------------NLTNI 355
Query: 780 TNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812
L + ++ + NLT + L L+D
Sbjct: 356 NWLSAGHNQ-ISDLTPLA-NLTRITQLGLNDQA 386
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 66/453 (14%), Positives = 146/453 (32%), Gaps = 92/453 (20%)
Query: 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKL 349
L ++ +L R + + L +L +N S + + P KL
Sbjct: 42 QTDLDQVT--TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKN-------LTKL 92
Query: 350 RTLSLDNCCKLQGTLP-RRLLLLETLDITSCDQL--LVTIQCLPALSELQIDGCKRVVFS 406
+ ++N ++ P L L L + +Q+ + ++ L L+ L++ S
Sbjct: 93 VDILMNN-NQIADITPLANLTNLTGLTL-FNNQITDIDPLKNLTNLNRLELSSNTISDIS 150
Query: 407 SPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCR 466
+ + SL L Q+ L +
Sbjct: 151 A----------------------LSGLTSLQQLSFGN--QVTDLKPLANLTT-------- 178
Query: 467 LQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALE 526
L+ L++S + ++ + L L++L + + + + + L + + L+
Sbjct: 179 LERLDISSNK-VSDIS-VLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGN-QLK 234
Query: 527 SLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCH-----ALESLPEAW 581
+ S ++L L + + N + + ++ ++L + +G L L
Sbjct: 235 DIGT---LASLTNLTDLDL-ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA-- 288
Query: 582 MHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC--------SKLESLAE-RL 632
L +LE++ L +S NL L YL + S L L
Sbjct: 289 --------LTNLELNEN-QLEDISPISNLKN-LTYLTLYFNNISDISPVSSLTKLQRLFF 338
Query: 633 DNTSLEEIS-ISVLENLKSL---------PADLHNLHHLQKIWIFGCPNLESFPEEGLPS 682
N + ++S ++ L N+ L L NL + ++ + + P +
Sbjct: 339 YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA-WTNAPVNYKAN 397
Query: 683 TKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715
+ + + P + + S I+
Sbjct: 398 VSIPNT-VKNVTGALIAPATISDGGSYTEPDIT 429
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 55/301 (18%), Positives = 111/301 (36%), Gaps = 54/301 (17%)
Query: 467 LQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPS----QLRSVVIEEC 522
L LELS ++ + AL L+SL ++ + + + P A L + + S + +
Sbjct: 136 LNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDI 192
Query: 523 DALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWM 582
L L +LE L + N + + + + L + + G L+ +
Sbjct: 193 SVLAKLT---------NLESLIA-TNNQISDITPLGILTNLDELSLNGNQ-LKDIGT--- 238
Query: 583 HNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEIS- 641
++ +NL L N +L + +KL L +L + IS
Sbjct: 239 ------------LASLTNLTDLDLANNQISNLA--PLSGLTKLTEL--KLGANQISNISP 282
Query: 642 ISVLENLKSL---------PADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIY 691
++ L L +L + + NL +L + ++ N+ L TKL L Y
Sbjct: 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISPVSSL--TKLQRLFFY 339
Query: 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGS 751
+ + + + + NLT++ L + T + L ++D + + + +
Sbjct: 340 NN-KVSDVSS-LANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQAWTNAPVNYKA 396
Query: 752 N 752
N
Sbjct: 397 N 397
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 2e-09
Identities = 68/340 (20%), Positives = 120/340 (35%), Gaps = 45/340 (13%)
Query: 478 LTRLPQALLT-LSSLTEMRIHDC--ASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQ 534
++ + + + VS + L +Q + + + L SLP+
Sbjct: 22 ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNLPP 80
Query: 535 NSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLE 594
+ L I + N+L+S PE LP+ L + L +LPE LPA+L+HL+
Sbjct: 81 Q----ITVLEI-TQNALISLPE--LPASLEYLDACDNR-LSTLPE------LPASLKHLD 126
Query: 595 VSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLEN-LKSLPA 653
V L+ LP L+Y+ ++ +L L E TSLE +S+ N L LP
Sbjct: 127 VDNNQ----LTMLPELPALLEYINADNN-QLTMLPELP--TSLEVLSVR--NNQLTFLPE 177
Query: 654 DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY-DCEN--LKALPNCMHNLTSLL 710
+L L LES P + + E I+ C + +P + +L
Sbjct: 178 LPESLEALD----VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233
Query: 711 NLKISECP-SVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDL 769
+ + + P S T + S + + T W
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF----- 288
Query: 770 VSPPPFPASLTNLW--ISDMPDLESISSIGENLTSLKTLR 807
P + ++ +W + S+ + L+ + R
Sbjct: 289 --PENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSAR 326
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 7e-09
Identities = 62/266 (23%), Positives = 101/266 (37%), Gaps = 53/266 (19%)
Query: 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDAL 525
+ + E ++ L + L+ +E++++ +L S P LP Q+ + I + AL
Sbjct: 38 KQALPGENRNEAVSLLKECLIN--QFSELQLNRL-NLSSLP-DNLPPQITVLEITQN-AL 92
Query: 526 ESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNE 585
SLPE +SLE L N L + PE LP+ L+ + + L LPE
Sbjct: 93 ISLPE-----LPASLEYLDA-CDNRLSTLPE--LPASLKHLDVDNNQ-LTMLPE------ 137
Query: 586 LPATLEHLEVSY---------CSNLALLSRNGN----LPQSLKYLKIEDCS--KLESLAE 630
LPA LE++ ++L +LS N LP+ + L+ D S LESL
Sbjct: 138 LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA 197
Query: 631 ---RLDNTSLEEISISVLEN-LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLT 686
R ++ EI EN + +P ++ +L I + P L+
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP--------------LS 243
Query: 687 ELTIYDCENLKALPNCMHNLTSLLNL 712
A P+
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMS 269
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 68/394 (17%), Positives = 118/394 (29%), Gaps = 83/394 (21%)
Query: 306 NIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP 365
+L E + L L+R +P D + P++ L + L +LP
Sbjct: 48 EAVSLLKEC-LINQFSELQLNRLNLSS-LP-------DNLPPQITVLEITQ-NALI-SLP 96
Query: 366 RRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRS 425
LE LD + ++
Sbjct: 97 ELPASLEYLD----------------ACDNRL---------------------------- 112
Query: 426 ETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL 485
+ LP+ SL L + QL L PELP L+++ + LT LP+
Sbjct: 113 -STLPELPASLKHLDVDNN-QLTML----------PELPALLEYINADNNQ-LTMLPE-- 157
Query: 486 LTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545
+SL + + + L P LP L ++ + LESLP ++N +S +
Sbjct: 158 -LPTSLEVLSVRNN-QLTFLP--ELPESLEALDVSTNL-LESLPAVPVRNHHSEETEIFF 212
Query: 546 R-SCNSLVSFPE-VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLAL 603
R N + PE + TII+ L S + + H Y S
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNP-LSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271
Query: 604 LSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL--PADLHNLHHL 661
+ P + +K +++ EE + + L L N
Sbjct: 272 QQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGF 331
Query: 662 QK---IWIFGCPNLESFPEEGLPSTKLTELTIYD 692
++ W+ ++ + D
Sbjct: 332 REQVAAWLEKLSASAELRQQSFAVAADATESCED 365
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 59/292 (20%), Positives = 92/292 (31%), Gaps = 70/292 (23%)
Query: 534 QNSNSSLECLAIRSCNSLVSFPE--VALPSQLRTIIIGGCH---ALESLPEAWMHNELPA 588
N+N SL + N++ + + + G + A+ L E
Sbjct: 7 INNNFSLSQNS--FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL------- 57
Query: 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENL 648
+ + L L S NLP + L+I L SL E SLE + L
Sbjct: 58 -INQFSELQLNRLNLSSLPDNLPPQITVLEITQN-ALISLPELP--ASLEYLDACDN-RL 112
Query: 649 KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTS 708
+LP +L HL + L PE L + + L LP +L
Sbjct: 113 STLPELPASLKHL---DVDNN-QLTMLPELP---ALLEYINADNN-QLTMLPELPTSLEV 164
Query: 709 L--LNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGC 766
L N +++ P P +L++LDV N SL
Sbjct: 165 LSVRNNQLTFLPE--------LPESLEALDVST------------NLLESL--------- 195
Query: 767 PDLVSPPPFPASLTNLWISDMP-DLES--ISSIGE---NLTSLKTLRLSDCP 812
P P + +++ I+ I E +L T+ L D P
Sbjct: 196 ------PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 62/243 (25%)
Query: 599 SNLALLSRNGNLPQSLK-YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHN 657
+L+ S + + Y D + ++L N ++ + ++ L
Sbjct: 11 FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL-----Q 65
Query: 658 LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSL--LNLKIS 715
L+ L L S P+ P +T L I L +LP +L L + ++S
Sbjct: 66 LNRLN---------LSSLPDNLPPQ--ITVLEITQN-ALISLPELPASLEYLDACDNRLS 113
Query: 716 ECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPF 775
P + P +L+ LDV + N+ T L P
Sbjct: 114 TLPEL--------PASLKHLDVDN------------NQLTML---------------PEL 138
Query: 776 PASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835
PA L + + ++ + E TSL+ L + + +L + E LP+SL L +
Sbjct: 139 PALLEYINADN----NQLTMLPELPTSLEVLSVRNN-QLTFLPE--LPESLEALDVSTNL 191
Query: 836 LIE 838
L
Sbjct: 192 LES 194
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 51/274 (18%)
Query: 574 LESLPEAWMHNELPATLEHLEVSYCSNLALLSRN--GNLPQSLKYLKIEDC--SKLESLA 629
L S+P +P++ LE+ L L L Q L L + S +
Sbjct: 19 LTSVPT-----GIPSSATRLELESN-KLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCS 71
Query: 630 ERLDN-TSLEEISISVLEN-LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPS--TKL 685
+ TSL+ + +S N + ++ ++ L L+ + NL+ E + L
Sbjct: 72 QSDFGTTSLKYLDLS--FNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNL 128
Query: 686 TELTIYDCENLKALPNCM-HNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKI 742
L I + + N + + L+SL LK++ +F D F NL LD+
Sbjct: 129 IYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS---- 183
Query: 743 SKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISS-IGENLT 801
+ L +SL L +S S+ + + L
Sbjct: 184 --------QCQLEQLSPTAFNSL-----------SSLQVLNMSHNN-FFSLDTFPYKCLN 223
Query: 802 SLKTLRLSDCPKLKYFSE---QGLPKSLLQLHIY 832
SL+ L S + + Q P SL L++
Sbjct: 224 SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLT 256
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 58/296 (19%), Positives = 99/296 (33%), Gaps = 62/296 (20%)
Query: 9 KKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADP--VYQLKEL 66
+ LL+LDDVW+ A +I++TTR+ V + + V L
Sbjct: 236 PRSLLILDDVWDPWV---------LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGL 286
Query: 67 SDDDCLDFTRH------QSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVL-- 118
+ L+ + L I+ +C G PL +G LL RD P W + L
Sbjct: 287 GREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQ 344
Query: 119 --KTDIWNLRDSD--ILPALR--LKQCFA---------YSSL--FPKDYEFQDEEIILLW 161
+R S AL + Y+ L KD + + + +LW
Sbjct: 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
Query: 162 TAEGFLDQEYNGRKMEDLGREFVRELHSRSL-FQQSSYDASRFVMHDLINDLARWAAGEI 220
+ ++ED+ +EFV +SL F + + + +HDL D E
Sbjct: 405 --------DLETEEVEDILQEFVN----KSLLFCNRNGKSFCYYLHDLQVDFLT----EK 448
Query: 221 CFRMEDTLAGENRQKFSESLRHFSYICGEYDG-------EKRLKSICDVEHLRTFL 269
L + +F + + + D + S + L +
Sbjct: 449 NRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMASANMHKELCALM 504
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 96/579 (16%), Positives = 182/579 (31%), Gaps = 140/579 (24%)
Query: 291 NHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLR 350
+ + + + S + + + +L L L LS + + L
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKC------SASLT 103
Query: 351 TLSLDNCCKLQGTLP-----RRLLLLETLDITSCDQLLVTIQ-----CLPALSELQIDGC 400
+L L L G + L+ L+++S L + L +L L +
Sbjct: 104 SLDLSRN-SLSGPVTTLTSLGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 401 KRVVFSS---PHLVHAVNVREQAYFWRSETRLPQDI-----RSLNWLQISRC------PQ 446
S V + E + S ++ D+ +L +L +S P
Sbjct: 162 S---ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF 218
Query: 447 LISLVTVEEHDQQQPELPCRLQFLELSCCEGLT-RLPQALLTLSSLTEMRIHDCASLV-S 504
L LQ L++S L+ +A+ T + L + I V
Sbjct: 219 LGDC--------------SALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN-QFVGP 262
Query: 505 FPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLV-SFP-EVALPSQ 562
P L S L+ + + E +P+ ++ + +L L + N + P S
Sbjct: 263 IPPLPLKS-LQYLSLAENKFTGEIPD-FLSGACDTLTGLDLSG-NHFYGAVPPFFGSCSL 319
Query: 563 LRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC 622
L ++ + + LP + + L+ L++S+ S G LP+SL L
Sbjct: 320 LESLALSSNNFSGELPMDTLLK-MR-GLKVLDLSFNE----FS--GELPESLTNL----S 367
Query: 623 SKLESLAERLDNTSLE-----EISISVLENLKSL-----------PADLHNLHHLQKIWI 666
+ L +L L + + + + L+ L P L N L + +
Sbjct: 368 ASLLTL--DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 667 FGCPNLE-SFPEEGLPSTKLTELTIYDCENLK-ALPNCMHNLTSLLNLKISECPSVVSFP 724
L + P +KL +L ++ L+ +P + + +L L + P
Sbjct: 426 SFN-YLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Query: 725 ED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLW 783
TNL + + +NR T P W
Sbjct: 484 SGLSNCTNLNWISL------------SNNRLTG-----------------EIPK-----W 509
Query: 784 ISDMPDLESI------------SSIGENLTSLKTLRLSD 810
I + +L + + +G + SL L L+
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNT 547
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 53/327 (16%), Positives = 91/327 (27%), Gaps = 78/327 (23%)
Query: 538 SSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSY 597
+ LE L + + + S + L ++ + + L+ L VS
Sbjct: 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSS 135
Query: 598 CSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLE---EISISVLENLKSL--- 651
+ L G + LK + LE L L S+ + + + L
Sbjct: 136 NT----LDFPGKVSGGLK------LNSLEVL--DLSANSISGANVVGWVLSDGCGELKHL 183
Query: 652 ---------PADLHNLHHLQKIWIFGCPNLE-SFPEEGLPSTKLTELTIYDCENLK-ALP 700
D+ +L+ + + N P G + L L I L
Sbjct: 184 AISGNKISGDVDVSRCVNLEFLDVSSN-NFSTGIPFLGD-CSALQHLDISGN-KLSGDFS 240
Query: 701 NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRF 760
+ T L L IS V P +LQ L + + K + + ++ S +L
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLPL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 761 TIWG----GCPDLVSPPPFPASLTNL--------------------WISDMPDLESI--- 793
+ G G P + + M L+ +
Sbjct: 300 DLSGNHFYG--------AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 794 ---------SSIGENLTSLKTLRLSDC 811
S+ SL TL LS
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSN 378
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 290 LNHLPRLRVFSLCGYRNIFN--LPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFP 347
L L+ + N + I L+ LN+S ++ IP
Sbjct: 219 LGDCSALQHLDI--SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-------PLPLK 269
Query: 348 KLRTLSLDNCCKLQGTLPRRLLL----LETLDITSC 379
L+ LSL K G +P L L LD++
Sbjct: 270 SLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGN 304
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 83/513 (16%), Positives = 143/513 (27%), Gaps = 155/513 (30%)
Query: 289 LLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPK 348
L + L+ ++ N + ++ +L L++S + IP
Sbjct: 173 LSDGCGELKHLAI--SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD------CSA 224
Query: 349 LRTLSLDNCCKLQGTLPR---RLLLLETLDITSCDQLLVTI--QCLPALSELQIDGCKRV 403
L+ L + KL G R L+ L+I+S Q + I L +L L + K
Sbjct: 225 LQHLDISG-NKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPLPLKSLQYLSLAENK-- 280
Query: 404 VFSSPHLVHAVNVREQAYFWRSETRLPQDI----RSLNWLQISRC------PQLISLVTV 453
F+ +P + +L L +S P +
Sbjct: 281 -FTGE--------------------IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS- 318
Query: 454 EEHDQQQPELPCRLQFLELSCCEGLT-RLPQALL-TLSSLTEMRIHDCASLV-SFPQ--A 508
L+ L LS + LP L + L + + P+
Sbjct: 319 ------------LLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLT 364
Query: 509 ALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLV-SFPEVALPSQLRTII 567
L + L ++ + + + QN ++L+ L +++ N P
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPT---------- 413
Query: 568 IGGCHALESL-----------PEAWMHNELPATLEHL-------------EVSYCSNLAL 603
+ C L SL P + L L E+ Y L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLS---KLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 604 L--SRN---GNLPQSLKYLKIEDCSKLESLAERLDNTSLE-EI--SISVLENLKSL---- 651
L N G +P L +C+ L + L N L EI I LENL L
Sbjct: 471 LILDFNDLTGEIPSGLS-----NCTNLNWI--SLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 652 -------PADLHNLHHLQKI-------------WIFGCPNLES-------FPEEGLPSTK 684
PA+L + L + +F +
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 685 LTELTIYDCENL--KALPNCMHNLTSLLNLKIS 715
E ++ L++ I+
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 29/201 (14%), Positives = 64/201 (31%), Gaps = 36/201 (17%)
Query: 647 NLKSLPAD-LHNLHHLQKIWIFGCPNLESFPE---EGLPSTKLTELTIYDCENLKALP-N 701
+L+++P+ NL ++ +I++ L+ L +T + I + NL + +
Sbjct: 42 HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK--VTHIEIRNTRNLTYIDPD 99
Query: 702 CMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFT 761
+ L L L I + FP+ + + ++ + + N F L
Sbjct: 100 ALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL---- 154
Query: 762 IWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGE---NLTSLKTLRLSDCPKLKYFS 818
L + + +S+ N T L + L+ L
Sbjct: 155 --------------CNETLTLKLYNN----GFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196
Query: 819 E---QGLPKSLLQLHIYACPL 836
+ G+ L + +
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSV 217
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 28/204 (13%)
Query: 466 RLQFLELSCCEGLTRLP-QALLTLSSLTEMRIHDCASLVSFPQAALP--SQLRSVVIEEC 522
+ + +S L +L + LS +T + I + +L AL L+ + I
Sbjct: 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115
Query: 523 DALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVA---LPSQLRTIIIGGCHALESLPE 579
L+ P+ S L I + S P A L ++ T+ + S+
Sbjct: 116 G-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQ- 172
Query: 580 AWMHNELPATLEHLEVSYCSNLALLSRN--GNLPQSLKYLKIEDCSKLESLAERLDNTSL 637
+ N L+ + ++ L ++ ++ G + L + TS+
Sbjct: 173 GYAFNGT--KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL-------------DVSQTSV 217
Query: 638 EEISISVLENLKSLPADLHNLHHL 661
+ LE+LK L N L
Sbjct: 218 TALPSKGLEHLKEL--IARNTWTL 239
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 55/307 (17%), Positives = 108/307 (35%), Gaps = 64/307 (20%)
Query: 538 SSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSY 597
+ ++ S+ + +++ G + S+ + Y
Sbjct: 22 AEGIRAVLQK-ASVTDVVTQEELESITKLVVAGEK-VASIQG---------------IEY 64
Query: 598 CSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEIS-ISVLENLKSL----- 651
+NL L+ NGN + L + KL +L + + +IS + L NL+ L
Sbjct: 65 LTNLEYLNLNGNQITDISPL--SNLVKLTNL--YIGTNKITDISALQNLTNLRELYLNED 120
Query: 652 ----PADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIYDCENLKALPNCMHNL 706
+ L NL + + + NL + T L LT+ + +K + + NL
Sbjct: 121 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNM--TGLNYLTVTES-KVKDVTP-IANL 176
Query: 707 TSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK--PL--------LEWGSNRFTS 756
T L +L ++ + T+L + +I+ P+ L+ G+N+ T
Sbjct: 177 TDLYSLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD 235
Query: 757 LRRFTIWGGCPDLV----------SPPPFPASLTNLWISDMPD--LESISSIGENLTSLK 804
L + L LT L + ++ + IS + NL+ L
Sbjct: 236 L---SPLANLSQLTWLEIGTNQISDINAV-KDLTKLKMLNVGSNQISDISVLN-NLSQLN 290
Query: 805 TLRLSDC 811
+L L++
Sbjct: 291 SLFLNNN 297
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 57/302 (18%), Positives = 105/302 (34%), Gaps = 67/302 (22%)
Query: 547 SCNSLVSFPEVALPSQLRTIIIGGCHALESLPE-AWMHNELPATLEHLEVSYCSNLALLS 605
+ + S + + L + + G + + + + L +L + + +S
Sbjct: 52 AGEKVASIQGIEYLTNLEYLNLNGNQ-ITDISPLSNLVK-----LTNLYIGTN-KITDIS 104
Query: 606 RNGNLPQSLKYL-----KIEDCSKLESLA--ERLD---NTSLEEIS-ISVLENLKSL--- 651
NL +L+ L I D S L +L L+ N +L ++S +S + L L
Sbjct: 105 ALQNLT-NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163
Query: 652 ------PADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIYDCENLKALPNCMH 704
+ NL L + + +E L T L T Y + + +
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYN-QIEDISPLASL--TSLHYFTAYVN-QITDITP-VA 218
Query: 705 NLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKP----------LLEWGSNRF 754
N+T L +LKI + + L L++ +IS +L GSN+
Sbjct: 219 NMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277
Query: 755 TSLRRFTIWGGCPDLVSPPPFPASLTNLWISD----MPDLESISSIGENLTSLKTLRLSD 810
+ + L +L++++ D+E I LT+L TL LS
Sbjct: 278 SDISVL---NNLS----------QLNSLFLNNNQLGNEDMEVIG----GLTNLTTLFLSQ 320
Query: 811 CP 812
Sbjct: 321 NH 322
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 42/225 (18%)
Query: 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNL 672
+ I LAE L++ S++ + + L + K+ + G +
Sbjct: 6 ATLPAPINQIFPDADLAE-GIRAVLQKASVTDVVTQE-------ELESITKLVVAGE-KV 56
Query: 673 ESFPE-EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTN 731
S E L T L L + + + + NL L NL I + TN
Sbjct: 57 ASIQGIEYL--TNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTN 111
Query: 732 LQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLE 791
L+ L +++ IS + L T + +L + +L
Sbjct: 112 LRELYLNEDNISD---------ISPLANLT----------------KMYSLNLGANHNLS 146
Query: 792 SISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPL 836
+S + N+T L L +++ K+K + L L + +
Sbjct: 147 DLSPLS-NMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQI 189
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 79/531 (14%), Positives = 143/531 (26%), Gaps = 111/531 (20%)
Query: 311 PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVF---PKLRTLSLDNCCKLQGTLP-- 365
+ L+ L+LSR C D + L TL L +Q
Sbjct: 45 SYSFFSFPELQVLDLSR--------CEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGA 95
Query: 366 -RRLLLLETLDITSC---DQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAY 421
L L+ L I L L EL + F P
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF---------- 145
Query: 422 FWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHD-QQQPELPCRLQFLELSCCEGLTR 480
++ +L L +S + ++ D + ++P L+LS +
Sbjct: 146 ---------SNLTNLEHLDLSSN----KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNF 191
Query: 481 LPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540
+ L ++ + + ++ + L L L
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTC------------IQGLAGL-------EVHRL 232
Query: 541 ECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSN 600
R+ +L F + AL L + I L L +++ L +N
Sbjct: 233 VLGEFRNEGNLEKFDKSALEG-LCNLTIEEFR-LAYLDY--YLDDIIDLFNCL-----TN 283
Query: 601 LALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHH 660
++ S + +K + L L N + L++LK L +
Sbjct: 284 VSSFSLVSVTIERVKDFSY--NFGWQHL--ELVNCKFGQFPTLKLKSLKRL--TFTSNKG 337
Query: 661 LQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSV 720
P+LE L L+ TSL L +S +
Sbjct: 338 GNAFSEVDLPSLEFL---DLSRNGLSFKGC--------CSQSDFGTTSLKYLDLSFNGVI 386
Query: 721 VSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLT 780
L+ LD + + F+++ +L
Sbjct: 387 TMSSNFLGLEQLEHLDFQ------------HSNLKQMSEFSVFLSLR----------NLI 424
Query: 781 NLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHI 831
L IS + + I L+SL+ L+++ + + L L
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTF 474
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 44/266 (16%), Positives = 77/266 (28%), Gaps = 45/266 (16%)
Query: 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENL 648
+ ++ C L NLP S K L L L + +
Sbjct: 6 VVPNITYQ-CMELNFYKIPDNLPFSTKNL-------------DLSFNPLRHLGSYSFFSF 51
Query: 649 KSL--------------PADLHNLHHLQKIWIFGCPNLESFPEEGL-PSTKLTELTIYDC 693
L +L HL + + G ++S + L +L +
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 110
Query: 694 ENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGS 751
+ +L +L L ++ + F TNL+ LD+ KI
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-- 168
Query: 752 NRFTSLRRFTIWGGCPDL-------VSPPPFPA-SLTNLWISD-MPDLESISSIGENLTS 802
L + + DL + P F L L + + L + + + L
Sbjct: 169 --LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226
Query: 803 LKTLRLSDCPKLKYFSEQGLPKSLLQ 828
L+ RL + + KS L+
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALE 252
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 86/507 (16%), Positives = 164/507 (32%), Gaps = 81/507 (15%)
Query: 275 HFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIF---NLPNEIGNLKHLRCLNLSRTKWE 331
E LA S+ + HL L+ ++ N+ LP NL +L L+LS K
Sbjct: 106 VAVETNLA-SLENFPIGHLKTLKELNV--AHNLIQSFKLPEYFSNLTNLEHLDLSSNK-- 160
Query: 332 EWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPA 391
+ L ++ LL +LD
Sbjct: 161 --------------IQSIYCTDLRVLHQMP-------LLNLSLD---------------- 183
Query: 392 LSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLV 451
LS ++ + F L + +R Q + L ++ + +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHK-LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG-EFRNEG 241
Query: 452 TVEEHDQQQPELPCRLQFLELS---CCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQA 508
+E+ D+ E C L E L + L++++ + ++
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDF 300
Query: 509 ALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIII 568
+ + + + C P SL+ L S +F EV LPS L + +
Sbjct: 301 SYNFGWQHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPS-LEFLDL 354
Query: 569 GGCH--ALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYL-----KIED 621
++ +L++L++S+ + + S L L++L ++
Sbjct: 355 SRNGLSFKGCCSQSDFGTT---SLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQ 410
Query: 622 CSKLESLAERLDNTSLEEISISVLEN-LKSLPAD-LHNLHHLQKIWIFGCPNLESFPEEG 679
S+ +L + IS + + L L+ + + G E+F +
Sbjct: 411 MSEFSVFL---SLRNLIYLDIS--HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 680 LPS-TKLTELTIYDCENLKAL-PNCMHNLTSLLNLKISECPSVVSFPEDGFP--TNLQSL 735
LT L + C L+ L P ++L+SL L +S + S + +LQ L
Sbjct: 466 FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVL 523
Query: 736 DVHDLKISKPLLEWGSNRFTSLRRFTI 762
D I + + +SL +
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNL 550
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 66/373 (17%), Positives = 116/373 (31%), Gaps = 75/373 (20%)
Query: 465 CRLQFLELSCCE-GLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALP--SQLRSVVIEE 521
C Q + C +P+ + T + + + + Q L + + E
Sbjct: 9 CSAQDRAVLCHRKRFVAVPEGIPT--ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNE 65
Query: 522 CDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVAL--PSQLRTIIIGGCHALESLPE 579
+ ++ N +L L +RS N L P S L + I + L
Sbjct: 66 N-IVSAVEPGAFNN-LFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENK-IVILL- 120
Query: 580 AWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEE 639
+ L NL L N + + + LE L L+ +L
Sbjct: 121 -------DYMFQDL-----YNLKSLEVGDNDLVYISHRAFSGLNSLEQL--TLEKCNLTS 166
Query: 640 ISISVLENLKSL--------------PADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKL 685
I L +L L L+ L+ + I P L++ L L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 686 TELTIYDCENLKALPNCM-HNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKI 742
T L+I C NL A+P +L L L +S P + + LQ + +
Sbjct: 227 TSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLV---- 280
Query: 743 SKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPD--LESIS-SIGEN 799
+ + + G L L + ++ L ++ S+ +
Sbjct: 281 --------GGQLAVVEPYAFRG--------------LNYLRVLNVSGNQLTTLEESVFHS 318
Query: 800 LTSLKTLRLSDCP 812
+ +L+TL L P
Sbjct: 319 VGNLETLILDSNP 331
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 39/273 (14%), Positives = 87/273 (31%), Gaps = 62/273 (22%)
Query: 597 YCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL----- 651
C ++ +P + L L ++ ++ + L
Sbjct: 17 LCHRKRFVAVPEGIPTETRLL-------------DLGKNRIKTLNQDEFASFPHLEELEL 63
Query: 652 ---------PADLHNLHHLQKIWIFGCPNLESFPEEGLPS-TKLTELTIYDCENLKALP- 700
P +NL +L+ + + L+ P + LT+L I + + L
Sbjct: 64 NENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN-KIVILLD 121
Query: 701 NCMHNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISK---------PLLEW 749
+L +L +L++ + +V F +L+ L + ++ L
Sbjct: 122 YMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Query: 750 ---GSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTL 806
++R ++ + L L IS P L++++ +L +L
Sbjct: 181 LRLRHLNINAIRDYS-FKRLY----------RLKVLEISHWPYLDTMTPNCLYGLNLTSL 229
Query: 807 RLSDCPKLKYFSE---QGLPKSLLQLHIYACPL 836
++ C L + L L L++ P+
Sbjct: 230 SITHC-NLTAVPYLAVRHLV-YLRFLNLSYNPI 260
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 52/325 (16%), Positives = 116/325 (35%), Gaps = 55/325 (16%)
Query: 538 SSLECLAIRSC----NSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHL 593
+SL C C SL S P L ++++ + + + + + L+ L
Sbjct: 26 ASLSCDRNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNR-ITYISNSDLQR-CVN-LQAL 81
Query: 594 EVSYCSNLALLSRN--GNLPQSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLEN-L 648
++ + + + +L L++L + L +L+ +SL +++ N
Sbjct: 82 VLTSN-GINTIEEDSFSSLGS-LEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLL--GNPY 136
Query: 649 KSLPAD--LHNLHHLQKIWIFGCPNLESFPEEGLPS-TKLTELTIYDCENLKALPNCM-H 704
K+L +L LQ + + + T L EL I +L++
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLK 195
Query: 705 NLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISK-PLLEWGSNRFTSLRRFT 761
++ ++ +L + + E ++++ L++ D + E + SL +
Sbjct: 196 SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254
Query: 762 IWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE-- 819
+ N+ I+D L + + ++ L L S +LK +
Sbjct: 255 ----------------TFRNVKITDES-LFQVMKLLNQISGLLELEFSRN-QLKSVPDGI 296
Query: 820 -QGLPKSLLQLHIY------ACPLI 837
L SL ++ ++ +CP I
Sbjct: 297 FDRLT-SLQKIWLHTNPWDCSCPRI 320
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 44/241 (18%), Positives = 78/241 (32%), Gaps = 65/241 (26%)
Query: 592 HLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL 651
HL V CS+L L +LP L L N + EI +NLK+L
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALL-------------DLQNNKITEIKDGDFKNLKNL 78
Query: 652 --------------PADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK 697
P L L+++++ L+ PE+ + L EL +++ +
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKT--LQELRVHEN-EIT 134
Query: 698 ALP-NCMHNLTSLLNLKISECP-SVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFT 755
+ + + L ++ +++ P F ++ L + T
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRI---------ADTNIT 184
Query: 756 SLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGE----NLTSLKTLRLSDC 811
++ P P SLT L + I+ + L +L L LS
Sbjct: 185 TI--------------PQGLPPSLTELHLDGN----KITKVDAASLKGLNNLAKLGLSFN 226
Query: 812 P 812
Sbjct: 227 S 227
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 2e-06
Identities = 44/227 (19%), Positives = 79/227 (34%), Gaps = 60/227 (26%)
Query: 618 KIEDCSKLESLAE----RLDNTSLEEIS-ISVLENLKSLPAD---------LHNLHHLQK 663
I+ ++ AE L S+ + + L ++ + A+ + L ++ K
Sbjct: 10 PIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTK 69
Query: 664 IWIFGCPNLESFPEEGLPSTKLTELT-----IYDCENLKALPNCMHNLTSLLNL---KIS 715
+++ G + P L L L I D +LK L L SL +L IS
Sbjct: 70 LFLNGNKLTDIKPLTNL--KNLGWLFLDENKIKDLSSLKDLKK----LKSL-SLEHNGIS 122
Query: 716 ECPSVVSFPEDGFPTNLQSLDVHDLKISK--PL--------LEWGSNRFTSLRRFTIWGG 765
+ +V P L+SL + + KI+ L L N+ + +
Sbjct: 123 DINGLVHLP------QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-------- 168
Query: 766 CPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812
L L NL++S + + ++ L +L L L
Sbjct: 169 -VPLAGLT----KLQNLYLSKNH-ISDLRAL-AGLKNLDVLELFSQE 208
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 4e-05
Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 44/190 (23%)
Query: 632 LDNTSLEEIS-ISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690
+T +++I +L+K + + ++
Sbjct: 6 TVSTPIKQIFPDDAFAETIKD--------NLKKKSVTDAVTQNEL-------NSIDQIIA 50
Query: 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK--PL-- 746
+ ++K++ + L ++ L ++ + NL L + + KI L
Sbjct: 51 NNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKD 107
Query: 747 ------LEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENL 800
L N + + G L L +L++ + + I+ + L
Sbjct: 108 LKKLKSLSLEHNGISDIN------GLVHLPQ-------LESLYLGNNK-ITDITVL-SRL 152
Query: 801 TSLKTLRLSD 810
T L TL L D
Sbjct: 153 TKLDTLSLED 162
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 49/382 (12%), Positives = 115/382 (30%), Gaps = 69/382 (18%)
Query: 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALP--SQLRSVVIEEC 522
C + + +TL++ + + ++ P A L Q+ + + +
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL 79
Query: 523 DALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALESLPEA 580
+E + +++ L + N++ P L +++ L SLP
Sbjct: 80 -QIEEIDTYAFAY-AHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERND-LSSLP-- 133
Query: 581 WMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEI 640
+ L LS + N + ++ + + L++L +L + L +
Sbjct: 134 ------RGIFHNT-----PKLTTLSMSNNNLERIEDDTFQATTSLQNL--QLSSNRLTHV 180
Query: 641 SISVLENLKSL------PADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694
+S++ +L + L ++++ ++ LT L +
Sbjct: 181 DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRGPVNVE--LTILKLQHN- 236
Query: 695 NLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGSN 752
NL + N L+ + +S + F L+ L + + N
Sbjct: 237 NLTDTAW-LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN------------N 282
Query: 753 RFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPD--LESISSIGENLTSLKTLRLSD 810
R +L + + L + D+ L + L+ L L
Sbjct: 283 RLVAL---------------NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 327
Query: 811 CPKLKYFSEQGLPKSLLQLHIY 832
+ +L L +
Sbjct: 328 N-SIVTLKLSTHH-TLKNLTLS 347
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 68/238 (28%)
Query: 597 YCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL----- 651
C L + +P + + + L + + + ++L
Sbjct: 17 SCPQQGLQAVPVGIPAASQRI-------------FLHGNRISHVPAASFRACRNLTILWL 63
Query: 652 ---------PADLHNLHHLQKIWIFGCPNLESFPEE---GLPSTKLTELTIYDCENLKAL 699
A L L+++ + L S GL +L L + C L+ L
Sbjct: 64 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDRC-GLQEL 120
Query: 700 PNCM-HNLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGSNRFTS 756
+ L +L L + + ++ + P+D F NL L +H NR +S
Sbjct: 121 GPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLH------------GNRISS 167
Query: 757 LRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGE----NLTSLKTLRLSD 810
+ G L S L L + ++ + +L L TL L
Sbjct: 168 VPERAFRG----LHS-------LDRLLLHQN----RVAHVHPHAFRDLGRLMTLYLFA 210
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 47/251 (18%), Positives = 88/251 (35%), Gaps = 44/251 (17%)
Query: 597 YCSNLALLSRNGNLPQSLKYLKIED-------------CSKLESLAERLDNTSLEEISIS 643
C+ L +P + +YL + + LE L +L S+ +I +
Sbjct: 60 VCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVL--QLGRNSIRQIEVG 117
Query: 644 VLENLKSL--------------PADLHNLHHLQKIWIFGCPNLESFPE---EGLPSTKLT 686
L SL L L+++W+ +ES P +PS L
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPS--LM 174
Query: 687 ELTIYDCENLKALP-NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKP 745
L + + + L+ + L +L L + C ++ P L+ L++ +
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPE- 232
Query: 746 LLEWGS-NRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPD--LESIS-SIGENLT 801
+ GS + +SL++ + L+ F L +L ++ L S+ + L
Sbjct: 233 -IRPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDLFTPLR 290
Query: 802 SLKTLRLSDCP 812
L L L P
Sbjct: 291 YLVELHLHHNP 301
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 39/327 (11%), Positives = 100/327 (30%), Gaps = 67/327 (20%)
Query: 527 SLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALESLPEAWMHN 584
++ E ++ + + + + + +SL ++ + + G L + A +
Sbjct: 1 AIHE--IKQNGNRYKIEKV-TDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAP 56
Query: 585 ELPATLEHLEVSYCSNLALLSRNGNLPQSLKYL--------KIEDCSKLESLAERLDNTS 636
LE L +S L +L +L+ L ++ +E+L N +
Sbjct: 57 -FTK-LELLNLSSN-VLYETLDLESLS-TLRTLDLNNNYVQELLVGPSIETL--HAANNN 110
Query: 637 LEEISISVLENLKSLPADLHN--LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694
+ +S S + K++ L N + L+ + ++ L ++ +
Sbjct: 111 ISRVSCSRGQGKKNI--YLANNKITMLRDLDEGCRSRVQYL---DLKLNEIDTVNF---- 161
Query: 695 NLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRF 754
+ +L +L + + L++LD+ N+
Sbjct: 162 -----AELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS------------NKL 203
Query: 755 TSLRRFTIWGGCPDLVSPPPFP--ASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812
+ P F A +T + + + L I +L+ L
Sbjct: 204 AFM--------------GPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248
Query: 813 KLKYFSEQGLPKSLLQLHIYACPLIEE 839
+ + ++ A +++
Sbjct: 249 -FHCGTLRDFFSKNQRVQTVAKQTVKK 274
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 53/291 (18%), Positives = 111/291 (38%), Gaps = 54/291 (18%)
Query: 534 QNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHL 593
N S + C +L P+ + + R + + ++ + + L LE L
Sbjct: 42 SNQFSKVIC----VRKNLREVPD-GISTNTRLLNLHENQ-IQIIKVNSFKH-LRH-LEIL 93
Query: 594 EVSYCSNLALLSRN--GNLPQSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLEN-L 648
++S ++ + L +L L++ D +L ++ + L+E+ + N +
Sbjct: 94 QLSRN-HIRTIEIGAFNGLA-NLNTLELFDN-RLTTIPNGAFVYLSKLKELWLR--NNPI 148
Query: 649 KSLPADL-HNLHHLQKIWIFGCPNLESFPE---EGLPSTKLTELTIYDCENLKALPNCMH 704
+S+P+ + + L+++ + L E EGL + L L + C NL+ +PN +
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN--LRYLNLAMC-NLREIPN-LT 204
Query: 705 NLTSLLNLKISECPSVVSFPEDGFP--TNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTI 762
L L L +S + + F +LQ L + +I +E + F +L+
Sbjct: 205 PLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQV--IERNA--FDNLQ---- 255
Query: 763 WGGCPDLVSPPPFPASLTNLWISDMPDLESIS-SIGENLTSLKTLRLSDCP 812
SL + ++ L + + L L+ + L P
Sbjct: 256 ---------------SLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 28/188 (14%)
Query: 628 LAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTE 687
L L +S I+ + + +L + N+ L +E + +
Sbjct: 26 LNGLLGQSSTANITEAQMNSLTYITLANINVTDLT--------GIEYA-------HNIKD 70
Query: 688 LTIYDCE--NLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744
LTI + N + L++L L+I + T+L LD+
Sbjct: 71 LTINNIHATNYNPI----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 745 PLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPD--LESISSIGENLTS 802
+L + + + + P +L L ++ + I E+
Sbjct: 127 SILTKINT-LPKVNSIDL-SYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGI-EDFPK 182
Query: 803 LKTLRLSD 810
L L
Sbjct: 183 LNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 599 SNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEIS-ISVLENLKSL------ 651
S S + + L + L N ++ +++ I N+K L
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYI--TLANINVTDLTGIEYAHNIKDLTINNIH 77
Query: 652 ---PADLHNLHHLQKIWIFGCPNLESFPEEGLPS-TKLTELTIYDCENLKALPNCMHNLT 707
+ L +L+++ I G ++ S L T LT L I + ++ ++ L
Sbjct: 78 ATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 708 SLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744
+ ++ +S ++ L+SL++ +
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 9e-06
Identities = 47/325 (14%), Positives = 95/325 (29%), Gaps = 52/325 (16%)
Query: 538 SSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALESLPEAWMHNELPATLEHLEV 595
++ + + +++ P L Q+ + + +E + T++ L +
Sbjct: 51 NNQKIVTF-KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAY--AHTIQKLYM 106
Query: 596 SYCSNLALLSRN--GNLPQSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLEN-LKS 650
+ + L + N+P L L +E L SL + + L +S+S N L+
Sbjct: 107 GFN-AIRYLPPHVFQNVPL-LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMS--NNNLER 161
Query: 651 LPAD-LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSL 709
+ D LQ + + L +PS L + L L ++
Sbjct: 162 IEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPS--LFHANVSYN-LLSTLAI----PIAV 213
Query: 710 LNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK-------PLLEW---GSNRFTSLRR 759
L S S+ L L + ++ P L N +
Sbjct: 214 EELDASHN-SINVVRGPVNV-ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 271
Query: 760 FTIWGGCPDL----------VSPPPFPASLTNLWISDMPD--LESISSIGENLTSLKTLR 807
+ L V+ + + L + D+ L + L+ L
Sbjct: 272 -HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330
Query: 808 LSDCPKLKYFSEQGLPKSLLQLHIY 832
L + +L L +
Sbjct: 331 LDHN-SIVTLKLSTHH-TLKNLTLS 353
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 46/260 (17%), Positives = 80/260 (30%), Gaps = 61/260 (23%)
Query: 592 HLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL 651
HL V CS+L L + + L L N + E+ + L+ L
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLL-------------DLQNNDISELRKDDFKGLQHL 80
Query: 652 --------------PADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK 697
L LQK++I +L P S L EL I+D ++
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPSS--LVELRIHDN-RIR 136
Query: 698 ALP-NCMHNLTSLLNLKISECP-SVVSFPEDGF----------------------PTNLQ 733
+P L ++ +++ P F F P L
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196
Query: 734 SLDVHDLKISKPLLEWGS-NRFTSLRRFTIWGGCPDLVSPPPFP--ASLTNLWISDMPDL 790
L + KI +E R++ L R + ++ +L L + + L
Sbjct: 197 ELHLDHNKIQA--IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-L 253
Query: 791 ESISSIGENLTSLKTLRLSD 810
+ + +L L+ + L
Sbjct: 254 SRVPAGLPDLKLLQVVYLHT 273
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 16/110 (14%)
Query: 305 RNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ--- 361
++ +LP + ++ ++ + + G + E + + L C ++
Sbjct: 48 KDYNHLPTGPLDKYKIQAIDATDSCIMS-----IGFDHMEGLQYVEKIRLCKCHYIEDGC 102
Query: 362 ----GTLPRRLLLLETLDITSC----DQLLVTIQCLPALSELQIDGCKRV 403
L + ++I SC D+ ++ + L L + V
Sbjct: 103 LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 39/327 (11%), Positives = 100/327 (30%), Gaps = 67/327 (20%)
Query: 527 SLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALP--SQLRTIIIGGCHALESLPEAWMHN 584
++ E ++ + + + + + +SL ++ + + G L + A +
Sbjct: 1 AIHE--IKQNGNRYKIEKV-TDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAP 56
Query: 585 ELPATLEHLEVSYCSNLALLSRNGNLPQSLKYL--------KIEDCSKLESLAERLDNTS 636
LE L +S L +L +L+ L ++ +E+L N +
Sbjct: 57 -FTK-LELLNLSSN-VLYETLDLESLS-TLRTLDLNNNYVQELLVGPSIETL--HAANNN 110
Query: 637 LEEISISVLENLKSLPADLHN--LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694
+ +S S + K++ L N + L+ + ++ L ++ +
Sbjct: 111 ISRVSCSRGQGKKNI--YLANNKITMLRDLDEGCRSRVQYL---DLKLNEIDTVNF---- 161
Query: 695 NLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRF 754
+ +L +L + + L++LD+ N+
Sbjct: 162 -----AELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS------------NKL 203
Query: 755 TSLRRFTIWGGCPDLVSPPPFP--ASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812
+ P F A +T + + + L I +L+ L
Sbjct: 204 AFM--------------GPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248
Query: 813 KLKYFSEQGLPKSLLQLHIYACPLIEE 839
+ + ++ A +++
Sbjct: 249 -FHCGTLRDFFSKNQRVQTVAKQTVKK 274
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 45/318 (14%), Positives = 92/318 (28%), Gaps = 50/318 (15%)
Query: 525 LESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCH-----ALESLPE 579
L + A + + LE L + S N L ++ S LRT+ + + S+
Sbjct: 46 LSQISAADLAP-FTKLELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIET 103
Query: 580 AWM-HNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLE 638
+N + + S + N L+ L S+++ L L ++
Sbjct: 104 LHAANNNI----SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL--DLKLNEID 157
Query: 639 EIS----ISVLENLKSLPADLHN-----------LHHLQKIWIFGCPNLESFPEEGLPST 683
++ + + L+ L +L L+ + + L E +
Sbjct: 158 TVNFAELAASSDTLEHL--NLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAA 214
Query: 684 KLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743
+T +++ + L + + +L + + D F N + V +
Sbjct: 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
Query: 744 K----PLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDL-------ES 792
K E + P PF L L + L E
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCC------EDLPAPFADRLIALKRKEHALLSGQGSETER 327
Query: 793 ISSIGENLTSLKTLRLSD 810
+ EN + +
Sbjct: 328 LECERENQARQREIDALK 345
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 57/393 (14%), Positives = 123/393 (31%), Gaps = 42/393 (10%)
Query: 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDAL 525
+L+FL LS L + + +++++ + + E+ + L
Sbjct: 116 QLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEK--------------EDPEGL 160
Query: 526 ESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNE 585
+ + + + S+ + + L + + C S+ N
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220
Query: 586 LPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAER---LDNTSLEEISI 642
+ L + N + ++ Y I + L R TSL+ +SI
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280
Query: 643 SVLEN--LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN--LKA 698
+ + + ++ + I F L +K++ D N L
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM--LCPSKISPFLHLDFSNNLLTD 338
Query: 699 LP-NCMHNLTSLLNLKISECPSVVSFPEDGFP----TNLQSLDVHDLKISKPLLEWGSNR 753
+LT L L + + + +LQ LD+ +S + +
Sbjct: 339 TVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 754 FTSLRRFTIWG-GCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812
SL + D + P + L + ++SI L +L+ L ++
Sbjct: 398 TKSLLSLNMSSNILTDTI-FRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN- 454
Query: 813 KLKYFSEQGLP--KSLLQLHIY------ACPLI 837
+LK + SL ++ ++ +CP I
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 71/500 (14%), Positives = 146/500 (29%), Gaps = 77/500 (15%)
Query: 346 FPKLRTLSLDNCCKLQGTLPR----RLLLLETLDITSCDQLLVTIQCLPALSELQIDGCK 401
KLR L + + +Q L LE LD++ + ++ L L +
Sbjct: 44 LSKLRILIISHNR-IQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNA 101
Query: 402 RVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQP 461
F + + F ++ L +L +S L +
Sbjct: 102 ---FDA--------LPICKEF--------GNMSQLKFLGLSTT-HLEKSSVLPIAHLNIS 141
Query: 462 ELPCRLQFLELSCCEG--LTRLPQALLTLSSLTEMRIHDCA--SLVSFPQAALPSQLRSV 517
++ L + L L + T H S+ + L + +
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201
Query: 518 VIEECDALESLPEAWMQNSNSSLECLAIRSC--NSLVSFPEVALPSQLRTIIIGGCHALE 575
+C S+ N S L NS + ++ + + I
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261
Query: 576 SLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIE--DCSKLESLAERLD 633
L + +L+ L + + + + + I+ S +
Sbjct: 262 QLDFRDF-DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320
Query: 634 N--TSLEEISISVLEN-LKSLPAD-LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689
+ + + S N L + +L L+ + + L+ + +T++ L
Sbjct: 321 SKISPFLHLDFS--NNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQ 377
Query: 690 IYDCEN--LKALPNCMH--NLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKP 745
D + SLL+L +S + P ++ LD+H KI
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSNKIKS- 435
Query: 746 LLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKT 805
+ + +L+ ++ + + +PD I + LTSL+
Sbjct: 436 -IPKQVVKLEALQEL-----------------NVASNQLKSVPD-----GIFDRLTSLQK 472
Query: 806 LRLSD------CPKLKYFSE 819
+ L CP++ Y S
Sbjct: 473 IWLHTNPWDCSCPRIDYLSR 492
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 14/131 (10%)
Query: 284 SVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVD 343
S L +L+ +L+ SL G R + N + +L LNLS A Q +
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLL 164
Query: 344 EVFPKLRTLSLDNCCK-----LQGTLPRRLLLLETLDITSCDQ------LLVTIQCLPAL 392
+L L+L C +Q + + L+++ + L ++ P L
Sbjct: 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224
Query: 393 SELQIDGCKRV 403
L + +
Sbjct: 225 VHLDLSDSVML 235
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 9e-05
Identities = 62/307 (20%), Positives = 104/307 (33%), Gaps = 37/307 (12%)
Query: 344 EVFPKLRTLSLDNC---CKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGC 400
+F L L CK L L +TLD+T + L + +
Sbjct: 19 GIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCP 78
Query: 401 KRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQL--ISLVTVEEHDQ 458
R P H R Q + + + +S+C +L +SL + D
Sbjct: 79 -RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDP 133
Query: 459 QQPELP--CRLQFLELSCCEGLTR--LPQALLTLSSLTEMRIHDCASL----VSFPQAAL 510
L L L LS C G + L L + S L E+ + C V A +
Sbjct: 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193
Query: 511 PSQLRSVVIEEC-DALESLPEAWMQNSNSSLECLAIRSCNSL--VSFPEVALPSQLRTII 567
+ + + L+ + + +L L + L F E + L+ +
Sbjct: 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253
Query: 568 IGGCH-----ALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC 622
+ C+ L L E+P TL+ L+V L L ++L +L+I +C
Sbjct: 254 LSRCYDIIPETLLELG------EIP-TLKTLQVFGIVPDGTLQL---LKEALPHLQI-NC 302
Query: 623 SKLESLA 629
S ++A
Sbjct: 303 SHFTTIA 309
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 49/266 (18%), Positives = 80/266 (30%), Gaps = 73/266 (27%)
Query: 597 YCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLH 656
C L NLP S K L L L +
Sbjct: 13 QCMELNFYKIPDNLPFSTKNL-------------DLSFNPLRHLG----------SYSFF 49
Query: 657 NLHHLQKIWIFGCPNLESFPE---EGLPSTKLTELTIYDCEN-LKALPNCM-HNLTSLLN 711
+ LQ + + C +++ + + L + L+ L + N +++L L+SL
Sbjct: 50 SFPELQVLDLSRC-EIQTIEDGAYQSL--SHLSTLILTG--NPIQSLALGAFSGLSSLQK 104
Query: 712 LKISECPSVVSFPEDGF--PTNLQSLDVHDLKISK----------PLLEW---GSNRFTS 756
L E S L+ L+V I LE SN+ S
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 757 L-------------RRFTIWGGCPDLVSPPP--F-PASLTNLWISDMPDLESISS-IGEN 799
+ ++ + P F L L + L+S+ I +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDR 222
Query: 800 LTSLKTLRLS------DCPKLKYFSE 819
LTSL+ + L CP++ Y S
Sbjct: 223 LTSLQKIWLHTNPWDCSCPRIDYLSR 248
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 45/215 (20%)
Query: 608 GNLPQSLKYLKIEDCSKLESL-AERLDNTSLEEIS-ISVLENLKSLPADLHNLHHLQKIW 665
G++ Q I L + +++ + + L+ + +L A + +
Sbjct: 1 GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI---- 56
Query: 666 IFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE 725
++ L L + D + L NLT + L++S P + +
Sbjct: 57 ----EGVQYL-------NNLIGLELKDN-QITDLAPLK-NLTKITELELSGNP-LKNVSA 102
Query: 726 DGFPTNLQSLDVHDLKISK--PL--------LEWGSNRFTSLRRFTIWGGCPDLVSPPPF 775
++++LD+ +I+ PL L N+ T++ G
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL---AGLT-------- 151
Query: 776 PASLTNLWISDMPDLESISSIGENLTSLKTLRLSD 810
+L L I + + ++ + NL+ L TL+ D
Sbjct: 152 --NLQYLSIGNAQ-VSDLTPL-ANLSKLTTLKADD 182
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 33/230 (14%), Positives = 80/230 (34%), Gaps = 56/230 (24%)
Query: 598 CSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEIS-ISVLENLKSL----- 651
+ LS G +++ ++ + L L L + + +++ + L + L
Sbjct: 40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGL--ELKDNQITDLAPLKNLTKITELELSGN 95
Query: 652 ----PADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC--ENLKALPNCMHN 705
+ + L ++ + + + P GL + L L + N+ L + N
Sbjct: 96 PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL--SNLQVLYLDLNQITNISPLAG-LTN 152
Query: 706 LTSLLNL---KISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTI 762
L L ++ ++S+ + + + L +L D KIS
Sbjct: 153 LQYL-SIGNAQVSDLTPLANL------SKLTTLKADDNKISD------------------ 187
Query: 763 WGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812
+SP +L + + + + +S + N ++L + L++
Sbjct: 188 -------ISPLASLPNLIEVHLKNNQ-ISDVSPL-ANTSNLFIVTLTNQT 228
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 36/305 (11%), Positives = 87/305 (28%), Gaps = 52/305 (17%)
Query: 522 CDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAW 581
++ +L + N ++ + E+ L + +
Sbjct: 214 NMSVNALGHLQLSN----IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269
Query: 582 MHNELPATLEHLEVSYCSNLALLSRN--GNLPQSLKYLKIEDCSK------LESLAERLD 633
P +E+L + + + R +LK L IE E+L
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329
Query: 634 NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC 693
+++ +SIS + + + + +G + L L
Sbjct: 330 EMNIKMLSISDTPFIHMVCPP--SPSSFTFLNFTQN-VFTDSVFQG--CSTLKRLQTLIL 384
Query: 694 EN--LKALPNCMHNLTSLLNLKISECPSVVSFPEDGF------PTNLQSLDVHDLKISKP 745
+ LK ++ +L+ + S+ S + ++ L++ ++
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDV-SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Query: 746 LLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKT 805
+ F L P + L + + + SI +L +L+
Sbjct: 444 V-------FRCL------------------PPKVKVLDLHNN-RIMSIPKDVTHLQALQE 477
Query: 806 LRLSD 810
L ++
Sbjct: 478 LNVAS 482
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 43/325 (13%), Positives = 88/325 (27%), Gaps = 75/325 (23%)
Query: 520 EECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIG---GCHALES 576
+E +L+ L + + S + + + ++ G G LE
Sbjct: 46 DEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEK 105
Query: 577 LPEAWMHNELPATLEHLEV---SYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD 633
+ L ++++E C NL + + + + +
Sbjct: 106 V-------ILSEKIKNIEDAAFKGCDNL----KICQIRKKTAPNLLPEAL---------- 144
Query: 634 NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPS--TKLTELTIY 691
S+ I I + + LE+ KL + +
Sbjct: 145 ADSVTAIFIP-----LGSSDAYRFKNRWEHFAFIEGEPLETTI---QVGAMGKLEDEIMK 196
Query: 692 DCENLK--------------ALPNCMHNLTSLLNLKISECPSVVSFPEDGFP--TNLQSL 735
+ + +L++L IS+ + + P+ F L +
Sbjct: 197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKI 255
Query: 736 DVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDM-----PDL 790
K+ L G F C L PAS+T I +L
Sbjct: 256 -----KLPHNLKTIGQRVF---------SNCGRLAGTLELPASVTA--IEFGAFMGCDNL 299
Query: 791 ESISSIGENLTSLKTLRLSDCPKLK 815
+ + G+ +T+L + K
Sbjct: 300 RYVLATGDKITTLGDELFGNGVPSK 324
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 30/218 (13%), Positives = 66/218 (30%), Gaps = 65/218 (29%)
Query: 618 KIEDCSKLESLAE----RLDNTSLEEIS-ISVLENLKSLPAD---------LHNLHHLQK 663
I LA L S+ ++ L +++ D + +L++
Sbjct: 8 PINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKE 67
Query: 664 IWIFGC-----PNLESFPEEGLPSTKLTELTIYDC--ENLKALPNCMHNLTSLL--NLKI 714
+ + L+ TKL EL++ +NL +P+ L+ L N ++
Sbjct: 68 LHLSHNQISDLSPLKDL-------TKLEELSVNRNRLKNLNGIPSA--CLSRLFLDNNEL 118
Query: 715 SECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP 774
+ S++ NL+ L + + K+ L +
Sbjct: 119 RDTDSLIHL------KNLEILSIRNNKLKS---------IVMLGFLS------------- 150
Query: 775 FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812
L L + + + + L + + L+
Sbjct: 151 ---KLEVLDLHGNE-ITNTGGL-TRLKKVNWIDLTGQK 183
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 839 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.98 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.98 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.96 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.96 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.9 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.9 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.86 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.86 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.85 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.85 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.85 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.85 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.85 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.84 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.84 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.84 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.83 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.83 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.83 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.81 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.78 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.78 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.77 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.76 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.75 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.75 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.75 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.74 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.73 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.73 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.73 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.73 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.73 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.72 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.72 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.69 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.69 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.69 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.68 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.68 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.67 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.66 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.66 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.66 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.63 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.63 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.62 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.61 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.61 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.61 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.57 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.56 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.56 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.55 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.55 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.54 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.53 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.53 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.52 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.51 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.49 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.45 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.45 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.44 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.42 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.4 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.39 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.39 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.39 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.38 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.37 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.35 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.33 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.32 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.3 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.29 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.29 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.27 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.27 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.25 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.25 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.24 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.22 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.19 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.19 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.15 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.14 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.14 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.14 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.08 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.04 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.01 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.01 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.97 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.96 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.92 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.88 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.86 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.86 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.85 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.83 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.83 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.78 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.74 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.73 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.68 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.6 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.51 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.51 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.42 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.29 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.24 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.07 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.95 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.71 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.69 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.61 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.46 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.34 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.23 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.23 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.17 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 97.14 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.07 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 97.07 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.03 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 96.41 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.87 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 92.89 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.23 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 91.81 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 90.87 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 89.32 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 88.26 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 87.75 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 87.74 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 86.09 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 82.71 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=420.84 Aligned_cols=531 Identities=17% Similarity=0.097 Sum_probs=346.2
Q ss_pred hcCCCceeEEEeCCCcccccccc--cccCcCcCcEeEecCccccccccCCC-CC-------------------C---ccc
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPN--EIGNLKHLRCLNLSRTKWEEWIPCGA-GQ-------------------E---VDE 344 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~~~~~p~~~-~~-------------------~---~~~ 344 (839)
|..+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+.+|..+ .. . ..+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 45555555555555553344444 55555555555555555544444332 22 0 011
Q ss_pred cCCCccEEeccCccccccCCC-cCCCCccEEeecccC--cccccCCCCCCccEEEecccccee-----ecCCCccceeee
Q 036119 345 VFPKLRTLSLDNCCKLQGTLP-RRLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNV 416 (839)
Q Consensus 345 ~l~~L~~L~L~~~~~l~~~lp-~~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~l~~l~l 416 (839)
.+++|++|++++| .+.+..| ..+.+|++|++++|. ..+..++.+++|++|++++|.... +.....++.+++
T Consensus 176 ~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGN-KISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSS-EEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred cCCCCCEEECCCC-cccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 1444444444443 3333333 245555555555554 112225556666666666555331 223344444444
Q ss_pred cccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEee
Q 036119 417 REQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRI 496 (839)
Q Consensus 417 ~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 496 (839)
.........+. ..+++|+.|++.++.-....+ ..+....++|+.|++++|.+.+.+|..++.+++|++|++
T Consensus 255 s~n~l~~~~~~---~~l~~L~~L~L~~n~l~~~ip------~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 255 SSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIP------DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp CSSCCEESCCC---CCCTTCCEEECCSSEEEESCC------CCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred CCCcccCccCc---cccCCCCEEECcCCccCCccC------HHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 43332221111 145556666665543211111 111122257788888888776677777888888888888
Q ss_pred cCCCCCcccCC--CCCCCCccEEEeccCccccccchhhhhCCCC-ccceEecccCCCCcCCCC-CCC--CCCccEEEEcC
Q 036119 497 HDCASLVSFPQ--AALPSQLRSVVIEECDALESLPEAWMQNSNS-SLECLAIRSCNSLVSFPE-VAL--PSQLRTIIIGG 570 (839)
Q Consensus 497 ~~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~-~~~--~~~L~~L~l~~ 570 (839)
++|...+.+|. ...+++|++|++++|.....+|..+. .++ +|+.|++++|.....++. ... +++|+.|++++
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH--HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH--hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 88765555554 34577888888888776556665442 223 788888888766554442 222 56788888888
Q ss_pred CCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceeeeccccccc
Q 036119 571 CHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLK 649 (839)
Q Consensus 571 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~ 649 (839)
|.....+|..+... ++|+.|++++|......+.....+++|+.|++++|.....++..+. .++|+.|++++|++.+
T Consensus 404 n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 404 NGFTGKIPPTLSNC---SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp SEEEEECCGGGGGC---TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CccccccCHHHhcC---CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 86555666554332 4788888888865545554444456788888888877666665544 4889999999998888
Q ss_pred CccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC---
Q 036119 650 SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--- 726 (839)
Q Consensus 650 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--- 726 (839)
.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..+.+|..+..+++|+.|++++|++...+|..
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 88888888999999999999888888888888889999999999888888888888999999999988877555521
Q ss_pred --------------------------------------------------------------------CCCCCcceEEec
Q 036119 727 --------------------------------------------------------------------GFPTNLQSLDVH 738 (839)
Q Consensus 727 --------------------------------------------------------------------~~~~~L~~L~l~ 738 (839)
..+++|++|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 124678899999
Q ss_pred CCCCCCccccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCcc
Q 036119 739 DLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLK 815 (839)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 815 (839)
+|++.+.+|.. +..+++|+.|++++|-.. ..+|. -+++|+.||+++|...+.+|..+..+++|+.|++++|+--.
T Consensus 641 ~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 641 YNMLSGYIPKE-IGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp SSCCBSCCCGG-GGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCcccccCCHH-HhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999887763 577889999999885322 23443 35689999999999988999889999999999999996666
Q ss_pred ccCCCCCCcccceeeecCCCCC
Q 036119 816 YFSEQGLPKSLLQLHIYACPLI 837 (839)
Q Consensus 816 ~l~~~~~~~sL~~L~i~~c~~l 837 (839)
.+|..+.+.++....+.|||.|
T Consensus 719 ~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 719 PIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp ECCSSSSGGGSCGGGGCSCTEE
T ss_pred cCCCchhhccCCHHHhcCCchh
Confidence 7887776667777777787754
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-42 Score=403.44 Aligned_cols=529 Identities=17% Similarity=0.097 Sum_probs=327.9
Q ss_pred HHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccC--CCCCCccccCCCccEEeccCccccccC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPC--GAGQEVDEVFPKLRTLSLDNCCKLQGT 363 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~--~~~~~~~~~l~~L~~L~L~~~~~l~~~ 363 (839)
++..+.++++|++++++.+. +..+|+.|+++++|++|+|++|.+.+.+|. .++. +++|++|++++| .+.+.
T Consensus 69 l~~~l~~L~~L~~l~~~~~~-~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-----l~~L~~L~Ls~n-~l~~~ 141 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSH-INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-----CSGLKFLNVSSN-TLDFP 141 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSC-EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-----CTTCCEEECCSS-EEECC
T ss_pred cChhHhccCcccccCCcCCC-cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-----CCCCCEEECcCC-ccCCc
Confidence 45678999999999999998 777889999999999999999999888887 6666 999999999996 66666
Q ss_pred CCc----CCCCccEEeecccC---ccccc---CCCCCCccEEEeccccceee---cCCCccceeeecccccccccccccC
Q 036119 364 LPR----RLLLLETLDITSCD---QLLVT---IQCLPALSELQIDGCKRVVF---SSPHLVHAVNVREQAYFWRSETRLP 430 (839)
Q Consensus 364 lp~----~l~~L~~L~l~~~~---~l~~~---l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~l~~l~~~~~~~~~~~ 430 (839)
+|. .+++|++|++++|. ..+.. ++.+++|++|++++|..... .....++.+++.........+. .
T Consensus 142 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l 219 (768)
T 3rgz_A 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--L 219 (768)
T ss_dssp SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--C
T ss_pred CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--c
Confidence 773 57899999999987 22333 78899999999999875542 2334555555554433222222 4
Q ss_pred CCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCC-
Q 036119 431 QDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAA- 509 (839)
Q Consensus 431 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~- 509 (839)
..+++|+.|++.++.-....+ ..+..+ ++|+.|++++|.+.+.+|.. .+++|++|++++|...+.+|...
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~------~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~ 290 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFS------RAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 290 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHH------HHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSC
T ss_pred ccCCCCCEEECcCCcCCCccc------HHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHH
Confidence 566777777776653211111 011112 35566666655554444432 55555555555554443444322
Q ss_pred -CCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCC--CCCCCCccEEEEcCCCCCcCCchhhhccc-
Q 036119 510 -LPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNE- 585 (839)
Q Consensus 510 -~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~- 585 (839)
.+++|+.|++++|.....+|..+ ..+++|+.|++++|.....+|. +..+++|++|++++|.....+|..+....
T Consensus 291 ~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 291 GACDTLTGLDLSGNHFYGAVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp TTCTTCSEEECCSSEEEECCCGGG--GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred hhcCcCCEEECcCCcCCCccchHH--hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence 13555555555555444444433 3345555555555544434441 34445555555555543323333222110
Q ss_pred -----------------------CCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceee
Q 036119 586 -----------------------LPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEIS 641 (839)
Q Consensus 586 -----------------------~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~ 641 (839)
..++|+.|++++|.....++.....+++|+.|++++|.....++..+. .++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 012455555555544333333333345566666666654444443333 36677777
Q ss_pred ecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCc
Q 036119 642 ISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 642 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 721 (839)
+++|.+.+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..+.+|.++..+++|++|++++|++..
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 77777766677667777777777777776666666666667777777777777666777777777777777777777766
Q ss_pred cCCCC-CCCCCcceEEecCCCCCCcccccc--------------------------------------------------
Q 036119 722 SFPED-GFPTNLQSLDVHDLKISKPLLEWG-------------------------------------------------- 750 (839)
Q Consensus 722 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-------------------------------------------------- 750 (839)
.+|.. ..+++|++|++++|++.+.+|...
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 66644 556777777777777665544321
Q ss_pred -------------------CCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeec
Q 036119 751 -------------------SNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRL 808 (839)
Q Consensus 751 -------------------~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 808 (839)
+..+++|+.+++++|.. ...+|. -+++|+.|++++|...+.+|..++.+++|+.|++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcc-cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 12245566677766421 122332 3457788888888777788877888888888888
Q ss_pred cCCCCccccCCC-CCCcccceeeecCCC
Q 036119 809 SDCPKLKYFSEQ-GLPKSLLQLHIYACP 835 (839)
Q Consensus 809 ~~c~~l~~l~~~-~~~~sL~~L~i~~c~ 835 (839)
++|.--..+|.. +-.++|++|++++|+
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 887433355542 223578888888774
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=356.93 Aligned_cols=553 Identities=16% Similarity=0.096 Sum_probs=267.1
Q ss_pred ccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccc-cc
Q 036119 236 FSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPN-EI 314 (839)
Q Consensus 236 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i 314 (839)
.+..++++.+........ ....+.++++|++| .+..+.+. ...+..|.++++|++|++++|. +..+|. +|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L------~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRL-PAANFTRYSQLTSL------DVGFNTIS-KLEPELCQKLPMLKVLNLQHNE-LSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEE------ECCSSCCC-CCCTTHHHHCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEE------ECCCCccC-ccCHHHHhcccCcCEEECCCCc-cCccChhhh
Confidence 345677777665443221 11246667777777 33333221 2234557778888888888887 667775 57
Q ss_pred cCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCCCccEEeecccC--ccc-cc--C
Q 036119 315 GNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLETLDITSCD--QLL-VT--I 386 (839)
Q Consensus 315 ~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~~L~~L~l~~~~--~l~-~~--l 386 (839)
+++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+..|. .+.+|++|+++++. .++ .. .
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVK-----QKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTT-----CTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred ccCCCCCEEECCCCccCccChhHccc-----cCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 88888888888888876555556666 888888888885 55544443 46678888887765 222 22 2
Q ss_pred CCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCC
Q 036119 387 QCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCR 466 (839)
Q Consensus 387 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~ 466 (839)
..+++|++|++++|....+... ....+++|+.+.+.++......... ....+. .++
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~--------------------~~~~l~~L~~L~l~~~~l~~~~~~~--~~~~l~--~~~ 223 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPG--------------------CFHAIGRLFGLFLNNVQLGPSLTEK--LCLELA--NTS 223 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTT--------------------GGGGSSEECEEECTTCCCHHHHHHH--HHHHHT--TSC
T ss_pred cccccccEEECCCCcccccChh--------------------hhhhhhhhhhhhccccccChhhHHH--HHHHhh--hcc
Confidence 3457788888887754332211 1122233333333222100000000 000000 023
Q ss_pred ceEEEeccCCCCCccccccCCCCC--ccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccceE
Q 036119 467 LQFLELSCCEGLTRLPQALLTLSS--LTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLECL 543 (839)
Q Consensus 467 L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 543 (839)
|+.|++++|.+.+..|.++..++. |+.|++++|......+. ...+++|+.|++++|......+..+ ..+++|+.|
T Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 301 (680)
T 1ziw_A 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYL 301 (680)
T ss_dssp CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEE
T ss_pred ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh--cCCCCccEE
Confidence 444444444443333333433322 44444444432222111 2234444444444443322222222 233444444
Q ss_pred ecccCCCCc-----CCC-----CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCC-cccccCC---CC
Q 036119 544 AIRSCNSLV-----SFP-----EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSN-LALLSRN---GN 609 (839)
Q Consensus 544 ~l~~~~~l~-----~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~---~~ 609 (839)
++++|.... .+| .+..+++|+.|++++|. +..++...+... ++|+.|++++|.. ...++.. ..
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGL--INLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTC--TTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHhccc--cCCcEEECCCCchhhhhcchhhhccc
Confidence 444332111 111 12233444444444442 222222211111 2444444444421 1111110 00
Q ss_pred cccccceeEeccCCCchhhhhhcC-CCCcceeeecccccccCcc-ccccCCCCCCeEEecCCCCCcccCCCCCCCCCcce
Q 036119 610 LPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLP-ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTE 687 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 687 (839)
..++|+.|++++|......+..+. .++|+.|++++|.+.+.+| ..+..+++|++|++++|......+..+..+++|+.
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 013455555555544333333222 2556666666665554443 34555666666666666554444445555566666
Q ss_pred Eeccccccc--ccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCcc-------ccccCCCcccc
Q 036119 688 LTIYDCENL--KALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPL-------LEWGSNRFTSL 757 (839)
Q Consensus 688 L~l~~~~~l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-------~~~~~~~l~~L 757 (839)
|++++|... +.+|..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.+.. +...+..+++|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 666665432 345555666666666666666554333322 44556666666666555321 11123455666
Q ss_pred ceEEEecCCCCCcCCCC----CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCC---Ccccceee
Q 036119 758 RRFTIWGGCPDLVSPPP----FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL---PKSLLQLH 830 (839)
Q Consensus 758 ~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~sL~~L~ 830 (839)
+.|++++|. +..++. .+++|+.|++++|......+..+..+++|+.|++++| +++.+++..+ .++|+.|+
T Consensus 539 ~~L~L~~N~--l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 539 HILNLESNG--FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp CEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEE
T ss_pred CEEECCCCC--CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEE
Confidence 666665542 222221 2346666666666544333333456666666666666 5555554321 24666666
Q ss_pred ecCCC
Q 036119 831 IYACP 835 (839)
Q Consensus 831 i~~c~ 835 (839)
+++||
T Consensus 616 l~~N~ 620 (680)
T 1ziw_A 616 MRFNP 620 (680)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 66654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=348.10 Aligned_cols=478 Identities=16% Similarity=0.062 Sum_probs=315.9
Q ss_pred ceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCCC
Q 036119 295 RLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLL 370 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~~ 370 (839)
.+++|++++|. +..+ |.+|+++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+..|. .+.+
T Consensus 34 ~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-----QHRLDTLVLTAN-PLIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-----CTTCCEEECTTC-CCSEECTTTTSSCTT
T ss_pred cCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccC-----ccccCeeeCCCC-cccccChhhhccccc
Confidence 57888888888 5554 567888888888888888887766777766 888888888885 55534443 4566
Q ss_pred ccEEeecccC--cc-cccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCc
Q 036119 371 LETLDITSCD--QL-LVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQL 447 (839)
Q Consensus 371 L~~L~l~~~~--~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 447 (839)
|++|++++|. .+ +..++.+++|++|++++|....+... .+ ..++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------~~-~~l~------------- 153 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-------------------KG-FPTE------------- 153 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-------------------TT-CCCT-------------
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-------------------cc-cCCc-------------
Confidence 7777777765 22 45677778888888877753321100 00 1123
Q ss_pred ccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCcc--EEeecCCCCCcccCCCCCCCCccEEEeccCccc
Q 036119 448 ISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLT--EMRIHDCASLVSFPQAALPSQLRSVVIEECDAL 525 (839)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l 525 (839)
+|+.|++++|.+....+..++.+++|+ .|++++|......+......+|+.|++.+|..+
T Consensus 154 ------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 154 ------------------KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp ------------------TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred ------------------ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 455555555544333344445555555 455555443333333333344555555444311
Q ss_pred c-------------------------ccchh-hhhCCCCccceEecccCCCCcCCCC-CCCCCCccEEEEcCCCCCcCCc
Q 036119 526 E-------------------------SLPEA-WMQNSNSSLECLAIRSCNSLVSFPE-VALPSQLRTIIIGGCHALESLP 578 (839)
Q Consensus 526 ~-------------------------~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~ 578 (839)
. .++.. +......+|+.|++++|......+. +..+++|++|++++|. +..+|
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp 294 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELP 294 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCC
Confidence 1 01111 1000112688888888755443332 5667788888888884 55676
Q ss_pred hhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhh--hcCCCCcceeeecccccccCc--ccc
Q 036119 579 EAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAE--RLDNTSLEEISISVLENLKSL--PAD 654 (839)
Q Consensus 579 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~ 654 (839)
..+... ++|++|++++|......+.....+++|+.|++++|.....++. ....++|+.|++++|.+.+.. +..
T Consensus 295 ~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 295 SGLVGL---STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp SSCCSC---TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred hhhccc---ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 544222 4788888888865554443344457888999888876544433 223488999999988887655 667
Q ss_pred ccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccccccccCCccCCCC-CCCCCc
Q 036119 655 LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSVVSFPED-GFPTNL 732 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L 732 (839)
+..+++|++|++++|......|..+..+++|++|++++|+..+..|. .+..+++|+.|++++|.+....|.. ..+++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 78889999999999887777777788888999999999877666554 3788899999999998887665554 668889
Q ss_pred ceEEecCCCCCCcc-c-cccCCCccccceEEEecCCCCCcC--CCCCCcccceeeecCCCCCCccccCCCCCCccCeeec
Q 036119 733 QSLDVHDLKISKPL-L-EWGSNRFTSLRRFTIWGGCPDLVS--PPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRL 808 (839)
Q Consensus 733 ~~L~l~~~~~~~~~-~-~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 808 (839)
++|++++|++.+.. + ...+..+++|+.|++++|...-.. ....+++|+.|++++|...+..|..+..+++| .|++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 99999999887522 1 124567888999999875322111 11235689999999998888888888899999 9999
Q ss_pred cCCCCccccCCCCC--CcccceeeecCCCC
Q 036119 809 SDCPKLKYFSEQGL--PKSLLQLHIYACPL 836 (839)
Q Consensus 809 ~~c~~l~~l~~~~~--~~sL~~L~i~~c~~ 836 (839)
++| +++.+++..+ .++|+.|++++||.
T Consensus 531 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 531 ASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 998 6677665433 26899999999873
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=346.50 Aligned_cols=482 Identities=16% Similarity=0.080 Sum_probs=275.5
Q ss_pred HHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP- 365 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp- 365 (839)
..|.++++|++|++++|. +..+ |.+|+++++|++|++++|.+.+..|..+.. +++|++|++++| .+. .+|
T Consensus 50 ~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~L~~n-~l~-~~~~ 121 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-----LTSLENLVAVET-KLA-SLES 121 (606)
T ss_dssp TTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-----CTTCCEEECTTS-CCC-CSSS
T ss_pred hhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCC-----cccCCEEEccCC-ccc-cccc
Confidence 346666777777777766 4443 456667777777777777665555665555 677777777765 444 222
Q ss_pred ---cCCCCccEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCc
Q 036119 366 ---RRLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNW 438 (839)
Q Consensus 366 ---~~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~ 438 (839)
..+.+|++|++++|. .+|..++.+++|++|++++|....+.. ..+..+
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l-- 176 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-----------------------NDLQFL-- 176 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-----------------------TTTHHH--
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-----------------------hhhhhh--
Confidence 245566666666654 245566666666666666654322100 000000
Q ss_pred eecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcc-cCC-CCCCCCccE
Q 036119 439 LQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVS-FPQ-AALPSQLRS 516 (839)
Q Consensus 439 L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-l~~-~~~~~~L~~ 516 (839)
..++..++.|++++|.+. .++.......+|+.|++++|..... ++. ...+++|+.
T Consensus 177 ----------------------~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 177 ----------------------RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp ----------------------HHCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred ----------------------hccccccceeeccCCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence 001123668999999884 4554444445899999999865422 111 224566666
Q ss_pred EEeccCcc-----ccccchhhh-hCCCCccceEeccc-CCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCC
Q 036119 517 VVIEECDA-----LESLPEAWM-QNSNSSLECLAIRS-CNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPAT 589 (839)
Q Consensus 517 L~l~~~~~-----l~~~~~~~~-~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 589 (839)
+.+..... +..+..... ......++.+.+.. +.....++.+..+++|+.|++.++. +..++ .+.. .++
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~--~l~~--~~~ 308 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE--DVPK--HFK 308 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC--CCCT--TCC
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhh--hccc--ccc
Confidence 55532211 111111100 00001344455522 2223333444555666667666664 34444 1111 135
Q ss_pred cceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccC--ccccccCCCCCCeEEec
Q 036119 590 LEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKS--LPADLHNLHHLQKIWIF 667 (839)
Q Consensus 590 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 667 (839)
|+.|++.+|.. ..++.. .+++|+.|++++|...... .....++|+.|++++|.+.+. .|..+..+++|++|+++
T Consensus 309 L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 309 WQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp CSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred CCEEEcccccC-cccccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 66677766655 444432 3456777777766544433 222446677777777666543 25556667777777777
Q ss_pred CCCCCcccCCCCCCCCCcceEeccccccccccc-ccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCc
Q 036119 668 GCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 668 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
+|... .+|..+..+++|++|++++|...+..| ..+..+++|+.|++++|.+....|.. ..+++|++|++++|.+.+.
T Consensus 385 ~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp SCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 76533 355566666777777777776555555 45666777777777777666555543 5566777777777766653
Q ss_pred cccccCCCccccceEEEecCCCCCcCC--CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCC--C
Q 036119 746 LLEWGSNRFTSLRRFTIWGGCPDLVSP--PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQ--G 821 (839)
Q Consensus 746 ~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~ 821 (839)
.....+..+++|+.|++++|...-... ...+++|+.|++++|...+..|..+..+++|+.|++++| +++.+|.. .
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~ 542 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQH 542 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGG
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhh
Confidence 222234566777777776642211110 113467888888888777777777888888888888888 57777764 3
Q ss_pred CCcccceeeecCCCC
Q 036119 822 LPKSLLQLHIYACPL 836 (839)
Q Consensus 822 ~~~sL~~L~i~~c~~ 836 (839)
++++|++|++++||.
T Consensus 543 l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSV 557 (606)
T ss_dssp SCTTCCEEECCSCCC
T ss_pred hcccCcEEEccCCCc
Confidence 345688888888764
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=350.78 Aligned_cols=536 Identities=15% Similarity=0.047 Sum_probs=380.3
Q ss_pred ccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCccccccc-ccccC
Q 036119 238 ESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLP-NEIGN 316 (839)
Q Consensus 238 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~ 316 (839)
...+++.+....... .....+.++++|++| .+..+.+. .+++..|..+++|++|++++|. +..+| ..|++
T Consensus 49 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L------~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 119 (680)
T 1ziw_A 49 SQLTSLDVGFNTISK-LEPELCQKLPMLKVL------NLQHNELS-QLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK 119 (680)
T ss_dssp TTCSEEECCSSCCCC-CCTTHHHHCTTCCEE------ECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT
T ss_pred CcCcEEECCCCccCc-cCHHHHhcccCcCEE------ECCCCccC-ccChhhhccCCCCCEEECCCCc-cCccChhHccc
Confidence 456777765443221 112346778899988 33444332 3344568999999999999999 66665 78999
Q ss_pred cCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-----CCCCccEEeecccC---cccccCCC
Q 036119 317 LKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR-----RLLLLETLDITSCD---QLLVTIQC 388 (839)
Q Consensus 317 L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~-----~l~~L~~L~l~~~~---~l~~~l~~ 388 (839)
+++|++|++++|.+.+..|..+.. +++|++|++++| .+++..|. .+.+|++|+++++. ..+..++.
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQ-----LENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSC-----CTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred cCCCCEEECCCCcccccCchhhcc-----cccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 999999999999998877777766 999999999996 66643332 34789999999886 23466788
Q ss_pred CCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCc-CCc
Q 036119 389 LPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELP-CRL 467 (839)
Q Consensus 389 l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~-~~L 467 (839)
+++|+.|.+.++...... ...... ....++|+.|++.++.-.. .. ...+..++ ++|
T Consensus 194 l~~L~~L~l~~~~l~~~~---------------~~~~~~--~l~~~~L~~L~L~~n~l~~-~~-----~~~~~~l~~~~L 250 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSL---------------TEKLCL--ELANTSIRNLSLSNSQLST-TS-----NTTFLGLKWTNL 250 (680)
T ss_dssp SSEECEEECTTCCCHHHH---------------HHHHHH--HHTTSCCCEEECTTSCCCE-EC-----TTTTGGGGGSCC
T ss_pred hhhhhhhhccccccChhh---------------HHHHHH--HhhhccccEEEccCCcccc-cC-----hhHhhccCcCCC
Confidence 999999999876532100 000000 0123567777777653211 10 01122221 359
Q ss_pred eEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCcccc-----ccch--hhhhCCCCc
Q 036119 468 QFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALE-----SLPE--AWMQNSNSS 539 (839)
Q Consensus 468 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~-----~~~~--~~~~~~~~~ 539 (839)
+.|++++|.+....+.+++.+++|+.|++++|......+. ...+++|+.|++.++.... .+|. ......+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 9999999988666677888999999999999866554443 4568999999998764322 1221 111145789
Q ss_pred cceEecccCCCCcCCC-CCCCCCCccEEEEcCCCC-CcCCchhhhcccCCCCcceEEEeecCCcccccCCCCccccccee
Q 036119 540 LECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHA-LESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYL 617 (839)
Q Consensus 540 L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 617 (839)
|+.|++++|......+ .+..+++|++|++++|.. +..++...+.....++|+.|++++|......+.....+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 9999999987655444 356778999999998752 33333333322222479999999987665555445556789999
Q ss_pred EeccCCCchhhh--hhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCC--cccCCCCCCCCCcceEecccc
Q 036119 618 KIEDCSKLESLA--ERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNL--ESFPEEGLPSTKLTELTIYDC 693 (839)
Q Consensus 618 ~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 693 (839)
++++|.....++ .....++|++|++++|++.+..+..+..+++|+.|++++|... +..|..+..+++|+.|++++|
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 999998765553 2234589999999999988888888889999999999998764 467888888999999999999
Q ss_pred cccccccccCcccccccccccccccCCccCC----C-----CCCCCCcceEEecCCCCCCccccccCCCccccceEEEec
Q 036119 694 ENLKALPNCMHNLTSLLNLKISECPSVVSFP----E-----DGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWG 764 (839)
Q Consensus 694 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~----~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~ 764 (839)
...+..|..+.++++|++|++++|.+....+ . ...+++|++|++++|.+.. ++...+..+++|+.+++++
T Consensus 491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHHHcccccCcceeECCC
Confidence 8766556678999999999999998764321 1 2567899999999999884 5554568899999999987
Q ss_pred CCCCCcCCCC----CCcccceeeecCCCCCCccccCCC-CCCccCeeeccCCCCc
Q 036119 765 GCPDLVSPPP----FPASLTNLWISDMPDLESISSIGE-NLTSLKTLRLSDCPKL 814 (839)
Q Consensus 765 ~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~c~~l 814 (839)
|. +..++. .+++|+.|++++|......+..+. .+++|+.|++++||-.
T Consensus 570 N~--l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 570 NN--LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SC--CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CC--CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 53 334443 357899999999977665554454 6889999999998644
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=337.19 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=113.1
Q ss_pred ccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccc-cccc
Q 036119 236 FSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNL-PNEI 314 (839)
Q Consensus 236 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i 314 (839)
++..+|++.+........ ....+.++++|++| .+..|.+. .+.+..|.++++|++|+|++|. +..+ |.+|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L------~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWL------DLSRCEIE-TIEDKAWHGLHHLSNLILTGNP-IQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE------ECTTCCCC-EECTTTTTTCTTCCEEECTTCC-CCCCCTTSS
T ss_pred CCCCcCEEECCCCCcCEe-ChhhccCCccCcEE------eCCCCccc-ccCHHHhhchhhcCEeECCCCc-ccccChhhc
Confidence 456788887765443221 12357788899988 34444332 2345678999999999999999 6555 8999
Q ss_pred cCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCcccccc-CCCc---CCCCccEEeecccC--cc-cccCC
Q 036119 315 GNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQG-TLPR---RLLLLETLDITSCD--QL-LVTIQ 387 (839)
Q Consensus 315 ~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~-~lp~---~l~~L~~L~l~~~~--~l-~~~l~ 387 (839)
+++++|++|++++|.+.+..|..++. +++|++|++++| .+.+ .+|. .+++|++|+++++. .+ +..++
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQ-----LITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTT-----CTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred CCcccCCEEEccCCccccccccccCC-----CCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 99999999999999997766677776 999999999997 5543 5675 67899999999986 22 34455
Q ss_pred CCCCcc----EEEecccccee
Q 036119 388 CLPALS----ELQIDGCKRVV 404 (839)
Q Consensus 388 ~l~~L~----~L~l~~~~~~~ 404 (839)
.+++|+ +|++++|....
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCE
T ss_pred hhhccccccceeeccCCCcce
Confidence 555554 89998887544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=332.47 Aligned_cols=505 Identities=14% Similarity=0.086 Sum_probs=291.0
Q ss_pred ccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCccccccccccc
Q 036119 236 FSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIG 315 (839)
Q Consensus 236 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 315 (839)
++..++++.+........ ....+.++++|++| .+..|.+. .+.+..|.++++|++|++++|.+....|..|+
T Consensus 31 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L------~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTI-QNTTFSRLINLTFL------DLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEE------ECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CCCcCcEEEccCCccCcC-ChhHhccCccceEE------ECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 344556665544332211 11245566666666 23333221 12344566677777777777763333456667
Q ss_pred CcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCcccccc-CCCc--CCCCccEEeecccC--cc-cccCCCC
Q 036119 316 NLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQG-TLPR--RLLLLETLDITSCD--QL-LVTIQCL 389 (839)
Q Consensus 316 ~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~-~lp~--~l~~L~~L~l~~~~--~l-~~~l~~l 389 (839)
++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+ .+|. .+++|++|+++++. .+ +..++.+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHN-----QKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTT-----CTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ccccccEeeccccCcccCCcchhcc-----CCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 7777777777777765544555544 677777777765 4442 2232 35667777776664 22 3445666
Q ss_pred CCcc--EEEeccccceeecCC----CccceeeecccccccccccccCCCCC--CCCceecccCCCcccccccccccCCCC
Q 036119 390 PALS--ELQIDGCKRVVFSSP----HLVHAVNVREQAYFWRSETRLPQDIR--SLNWLQISRCPQLISLVTVEEHDQQQP 461 (839)
Q Consensus 390 ~~L~--~L~l~~~~~~~~~~~----~~l~~l~l~~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~ 461 (839)
++|+ .|++++|....+... ..++.+++........ ....+. .+..+.+..+..+............+.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV----IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHH----HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHH----HhhhccccchhheechhhccccccccChhHhchhh
Confidence 6666 666666654443221 1122222221110000 000011 111111211111111111111111111
Q ss_pred CCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 462 ELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 462 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
. .+|+.|++++|.+....+..++.+++|+.|++++|. ++.+|. ...+++|++|++++|......+..+ ..+++|
T Consensus 253 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L 327 (606)
T 3t6q_A 253 E--MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSL 327 (606)
T ss_dssp G--SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTTC
T ss_pred c--CceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhh--hccCcC
Confidence 1 268888888888865555568888889999998884 445554 4457888888888886544434333 456788
Q ss_pred ceEecccCCCCcCCCC--CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeE
Q 036119 541 ECLAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLK 618 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 618 (839)
+.|++++|.....++. +..+++|+.|++++|.... +.. .+.....+++|+.|+
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~------------------------~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDC------------------------CNLQLRNLSHLQSLN 382 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEE------------------------STTTTTTCTTCCEEE
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCcccc-ccC------------------------cchhcccCCCCCEEE
Confidence 8888888766555542 4556677777776663211 100 011122235677777
Q ss_pred eccCCCchhhhhhcC-CCCcceeeecccccccCcccc-ccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccc
Q 036119 619 IEDCSKLESLAERLD-NTSLEEISISVLENLKSLPAD-LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENL 696 (839)
Q Consensus 619 l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 696 (839)
+++|......+..+. .++|+.|++++|++.+..+.. +..+++|++|++++|......|..+..+++|++|++++|+..
T Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred CCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 777765444444333 377888888888877665543 678888888888888777767777777888888888888765
Q ss_pred cc---ccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC
Q 036119 697 KA---LPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772 (839)
Q Consensus 697 ~~---lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 772 (839)
+. .+..+..+++|+.|++++|.+....|.. ..+++|++|++++|++.+..+.. +..++
T Consensus 463 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~----------------- 524 (606)
T 3t6q_A 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA-LSHLK----------------- 524 (606)
T ss_dssp GGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG-GTTCC-----------------
T ss_pred ccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH-hCccc-----------------
Confidence 52 2346788888888888888887665544 66788888888888887655432 22222
Q ss_pred CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 773 PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
+| .|++++|...+..|..+..+++|+.|++++||
T Consensus 525 -----~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 525 -----GI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp -----SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred -----cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 45 66666666655555555666677777777764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=319.67 Aligned_cols=472 Identities=16% Similarity=0.074 Sum_probs=295.3
Q ss_pred CCceeEEEeCCCccccc-ccccccCcCcCcEeEecCccccccc-cCCCCCCccccCCCccEEeccCccccccCCCc---C
Q 036119 293 LPRLRVFSLCGYRNIFN-LPNEIGNLKHLRCLNLSRTKWEEWI-PCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---R 367 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L~L~~~~~~~~~-p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~ 367 (839)
.++|++|+|++|. +.. .|.+|.++++|++|++++|...+.+ |..+.. +++|++|+|++| .+.+..|. .
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-----L~~L~~L~Ls~N-~l~~~~p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-----LPNLRILDLGSS-KIYFLHPDAFQG 95 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-----CTTCCEEECTTC-CCCEECTTSSCS
T ss_pred CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-----CCCCCEEECCCC-cCcccCHhHccC
Confidence 4678888888888 444 4678888888888888888655555 555655 888888888885 55544453 4
Q ss_pred CCCccEEeecccCc---cccc--CCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecc
Q 036119 368 LLLLETLDITSCDQ---LLVT--IQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQIS 442 (839)
Q Consensus 368 l~~L~~L~l~~~~~---l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 442 (839)
+.+|++|++++|.- ++.. ++.+++|++|++++|........
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~---------------------------------- 141 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---------------------------------- 141 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC----------------------------------
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc----------------------------------
Confidence 56677777777652 2333 66777777777777653210000
Q ss_pred cCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCC--CCccEEeecCCCCCcccCCC-CCCC------C
Q 036119 443 RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTL--SSLTEMRIHDCASLVSFPQA-ALPS------Q 513 (839)
Q Consensus 443 ~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~l~~~-~~~~------~ 513 (839)
..+..+ ++|+.|++++|.+....+..++.+ ++|+.|++++|......+.. ..++ +
T Consensus 142 ---------------~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 142 ---------------PSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp ---------------GGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred ---------------hhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 001111 588999999998877777777777 89999999998766544432 2222 4
Q ss_pred ccEEEeccCccccccchhhhh-CCCCccceEecccCCCCcCC--------C--CC--CCCCCccEEEEcCCCCCcCCchh
Q 036119 514 LRSVVIEECDALESLPEAWMQ-NSNSSLECLAIRSCNSLVSF--------P--EV--ALPSQLRTIIIGGCHALESLPEA 580 (839)
Q Consensus 514 L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~--------~--~~--~~~~~L~~L~l~~~~~l~~~~~~ 580 (839)
|+.|++++|......+..+.. ...+.++.+.+..+..-..+ . .+ ..+++|+.|++++|... .++..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~ 284 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSR 284 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccChh
Confidence 899999988655444433321 12356777777632211111 0 01 12367888988887543 33222
Q ss_pred hhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCC
Q 036119 581 WMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLH 659 (839)
Q Consensus 581 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~ 659 (839)
.+... ++|+.|++++|......+.....+++|+.|++++|......+..+ ..++|+.|++++|.+....+..+..++
T Consensus 285 ~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 285 VFETL--KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CSSSC--CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhcC--CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 22221 478888888886555444444445688888888886544434333 347888888888888766666778888
Q ss_pred CCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC---CCCCCcceEE
Q 036119 660 HLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED---GFPTNLQSLD 736 (839)
Q Consensus 660 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~ 736 (839)
+|++|++++|... .++ .+++|+.|++++|+.. .+|.. ..+++.|++++|.+.. ++.. ..+++|++|+
T Consensus 363 ~L~~L~Ls~N~l~-~i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 363 KLQTLDLRDNALT-TIH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLEN-LDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCCEEEEETCCSC-CCS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCS-STTHHHHTTCTTCCEEE
T ss_pred CCCEEECCCCCCC-ccc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCcccc-CchhhhhhcCCccceee
Confidence 8888888888654 233 2667888888887543 45543 3456666666665543 2211 3466777777
Q ss_pred ecCCCCCCccccccCCCccccceEEEecCCCCCc-------CCCCCCcccceeeecCCCCCCccccCCCCCCccCeeecc
Q 036119 737 VHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV-------SPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLS 809 (839)
Q Consensus 737 l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 809 (839)
+++|++.+..+......+++|+.|++++|..... .....+++|+.|++++|...+..|..+..+++|+.|+++
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence 7777766544433344566777777776432210 001123567777777776655555556667777777777
Q ss_pred CCCCccccCCCCCCcccceeeecCCC
Q 036119 810 DCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 810 ~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
+| +++.+++..++++|+.|++++|.
T Consensus 513 ~N-~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 513 SN-RLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp SC-CCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CC-CCCccChhhhhccccEEECCCCc
Confidence 76 66666666666666666666553
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=311.46 Aligned_cols=423 Identities=15% Similarity=0.103 Sum_probs=249.3
Q ss_pred CceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-CCCCc
Q 036119 294 PRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR-RLLLL 371 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~l~~L 371 (839)
++|++|++++|. +..+| ..|.++++|++|++++|.+.+..|..+.. +++|++|++++| .++ .+|. .+.+|
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~-~lp~~~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-----NQELEYLDLSHN-KLV-KISCHPTVNL 92 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-----CTTCCEEECCSS-CCC-EEECCCCCCC
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhc-----ccCCCEEecCCC-cee-ecCccccCCc
Confidence 677888888877 55544 56777888888888888776666666665 778888888775 555 4553 56677
Q ss_pred cEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCc
Q 036119 372 ETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQL 447 (839)
Q Consensus 372 ~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 447 (839)
++|++++|. .+|..++.+++|++|++++|.... . .+.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--------------------------~--------~~~----- 133 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--------------------------S--------SVL----- 133 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------------------------G--------GGG-----
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch--------------------------h--------hcc-----
Confidence 777777665 234667777777777776654211 0 000
Q ss_pred ccccccccccCCCCCCcCCc--eEEEeccCCC--CCccccccCCCC-CccEEeecCCCCCcccCCC--CCCCCccEEEec
Q 036119 448 ISLVTVEEHDQQQPELPCRL--QFLELSCCEG--LTRLPQALLTLS-SLTEMRIHDCASLVSFPQA--ALPSQLRSVVIE 520 (839)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~~~~~l~~~--~~~~~L~~L~l~ 520 (839)
.+ ++| +.|++++|.+ ....|.++..+. ....+++++|.....++.. ..+++|+.|+++
T Consensus 134 -----------~l----~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 134 -----------PI----AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp -----------GG----TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred -----------cc----ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 00 234 8888888877 566666666555 2334555566554444432 235666666666
Q ss_pred cCcc-------ccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceE
Q 036119 521 ECDA-------LESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHL 593 (839)
Q Consensus 521 ~~~~-------l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 593 (839)
+|.. ...++ .+ ..+++|+.|++++|.... ............++|+.|
T Consensus 199 ~n~~~~~~~~~~~~~~-~l--~~l~~L~~L~l~~~~l~~-----------------------~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILA-KL--QTNPKLSNLTLNNIETTW-----------------------NSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp ECCSTTTTHHHHHHHH-GG--GGCTTCCEEEEEEEEEEH-----------------------HHHHHHHHHHHTSSCSEE
T ss_pred ccccccccceeecchh-hh--ccccchhhccccccccCH-----------------------HHHHHHHHHhhhCcccEE
Confidence 6541 11111 11 233445555444432211 100000000001245566
Q ss_pred EEeecCCcccccCCC-----CcccccceeEeccCCCchhhh-----hhcCCCCcceeeecccccccCccccccCCCCCCe
Q 036119 594 EVSYCSNLALLSRNG-----NLPQSLKYLKIEDCSKLESLA-----ERLDNTSLEEISISVLENLKSLPADLHNLHHLQK 663 (839)
Q Consensus 594 ~l~~c~~l~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 663 (839)
++++|.....++... ..+++|+.+++.+|.. .+| ..+...+|+.|++++|.+.... ....+++|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccE
Confidence 665554332333322 3345677777776654 222 1122356888888887765432 1257788888
Q ss_pred EEecCCCCCcccCCCCCCCCCcceEecccccccc--cccccCcccccccccccccccCCccCCCC--CCCCCcceEEecC
Q 036119 664 IWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK--ALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHD 739 (839)
Q Consensus 664 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~ 739 (839)
|++++|...+..|..+..+++|++|++++|+..+ .+|..+..+++|+.|++++|.+...+|.. ..+++|++|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 8888887777777777788888888888887654 55667788888888888888877645543 5667888888888
Q ss_pred CCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 740 LKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
|.+.+..+.. ++++|+.|++++|... .+|..+..+++|+.|++++| +++.+|.
T Consensus 409 N~l~~~~~~~-------------------------l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 409 NILTDTIFRC-------------------------LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp SCCCGGGGGS-------------------------CCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcchhhh-------------------------hcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC-cCCccCH
Confidence 8877654432 1135666666666433 55555556666666666666 5555555
Q ss_pred CCC--CcccceeeecCCC
Q 036119 820 QGL--PKSLLQLHIYACP 835 (839)
Q Consensus 820 ~~~--~~sL~~L~i~~c~ 835 (839)
..+ .++|++|++++|+
T Consensus 462 ~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccCCcccEEECcCCC
Confidence 322 2456666666655
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=317.16 Aligned_cols=495 Identities=15% Similarity=0.117 Sum_probs=332.9
Q ss_pred ccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCC
Q 036119 262 VEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQ 340 (839)
Q Consensus 262 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~ 340 (839)
.+++++| .+..|.+. .+.+..|.++++|++|+|++|..+..+ |.+|+++++|++|+|++|.+.+..|..+..
T Consensus 23 p~~l~~L------dLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERL------LLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp CTTCCEE------EEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCcCEE------ECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 4567777 33334332 233456899999999999999657777 788999999999999999998888888888
Q ss_pred CccccCCCccEEeccCccccccCCCc-----CCCCccEEeecccC--cc--cccCCCCCCccEEEeccccceeecCCCcc
Q 036119 341 EVDEVFPKLRTLSLDNCCKLQGTLPR-----RLLLLETLDITSCD--QL--LVTIQCLPALSELQIDGCKRVVFSSPHLV 411 (839)
Q Consensus 341 ~~~~~l~~L~~L~L~~~~~l~~~lp~-----~l~~L~~L~l~~~~--~l--~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 411 (839)
+++|++|++++| .+.+.+|. .+++|++|++++|. .+ +..++++++|++|++++|......
T Consensus 96 -----l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~----- 164 (844)
T 3j0a_A 96 -----LFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC----- 164 (844)
T ss_dssp -----CSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-----
T ss_pred -----CcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-----
Confidence 999999999997 66655553 57899999999987 22 357899999999999998632210
Q ss_pred ceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCC-
Q 036119 412 HAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSS- 490 (839)
Q Consensus 412 ~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~- 490 (839)
...+..+. .++|+.|++++|.+....|..++.+++
T Consensus 165 ------------------~~~l~~l~--------------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 165 ------------------EHELEPLQ--------------------------GKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp ------------------SGGGHHHH--------------------------HCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ------------------HHHccccc--------------------------CCccceEECCCCccccccccchhhcCCc
Confidence 00000000 037888899988887777776766665
Q ss_pred -----ccEEeecCCCCCcccCC----CCCCCCccEEEeccCcc--------ccccc-hhhhhCCCCccceEecccCCCCc
Q 036119 491 -----LTEMRIHDCASLVSFPQ----AALPSQLRSVVIEECDA--------LESLP-EAWMQNSNSSLECLAIRSCNSLV 552 (839)
Q Consensus 491 -----L~~L~l~~~~~~~~l~~----~~~~~~L~~L~l~~~~~--------l~~~~-~~~~~~~~~~L~~L~l~~~~~l~ 552 (839)
|+.|++++|......+. .....+++.+.+..+.. +.... ..+.....++|+.|++++|....
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 99999999854443332 22346677777763221 11111 11211223789999998887655
Q ss_pred CCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhh
Q 036119 553 SFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAER 631 (839)
Q Consensus 553 ~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 631 (839)
..+ .+..+++|+.|++++|... .++...+... ++|+.|++++|......+.....+++|+.|++++|......+..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGL--DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTC--SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred cChhhhhcCCCCCEEECCCCcCC-CCChHHhcCC--CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 444 3466788999999988543 3333233222 47999999988655444444445678999999988543333333
Q ss_pred cC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccc-ccccCcccccc
Q 036119 632 LD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA-LPNCMHNLTSL 709 (839)
Q Consensus 632 ~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-lp~~l~~l~~L 709 (839)
+. .++|+.|++++|.+.+ +..+++|+.|++++|... .+|.. ..+++.|++++|...+. .+..+.++++|
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp SCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred hcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 33 4889999999988753 234888999999998665 55543 35788888888764431 12235578888
Q ss_pred cccccccccCCccCCC--CCCCCCcceEEecCCCCCCccc----cccCCCccccceEEEecCCCCCcCCCC----CCccc
Q 036119 710 LNLKISECPSVVSFPE--DGFPTNLQSLDVHDLKISKPLL----EWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASL 779 (839)
Q Consensus 710 ~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L 779 (839)
+.|++++|.+....+. ...+++|++|++++|.+.+..+ ...+..+++|+.|++++| .+..++. .+++|
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN--YLNSLPPGVFSHLTAL 506 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH--HHTTCCTTSSSSCCSC
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC--cccccChhHccchhhh
Confidence 8888888877643332 1446788888888888763221 123566778888888775 2222222 35678
Q ss_pred ceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCCC
Q 036119 780 TNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPL 836 (839)
Q Consensus 780 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 836 (839)
+.|++++|......+..+. ++|+.|++++| +++.+++..++ +|+.|+++++|.
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N-~l~~~~~~~~~-~L~~l~l~~Np~ 559 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLP--ANLEILDISRN-QLLAPNPDVFV-SLSVLDITHNKF 559 (844)
T ss_dssp SEEEEESCCCSSCCCCCCC--SCCCEEEEEEE-CCCCCCSCCCS-SCCEEEEEEECC
T ss_pred heeECCCCCCCccChhhhh--ccccEEECCCC-cCCCCChhHhC-CcCEEEecCCCc
Confidence 8888888866544443333 78888888887 66666665554 788888877653
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=306.93 Aligned_cols=449 Identities=16% Similarity=0.106 Sum_probs=252.7
Q ss_pred CceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCC
Q 036119 294 PRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLL 369 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~ 369 (839)
++|++|++++|. +..+ |.+|.++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+..|. .++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-----LGSLEHLDLSDN-HLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECTTS-CCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccc-----cccCCEEECCCC-ccCccCHHHhccCC
Confidence 567777777777 4444 566777777888888877776666666665 777778877775 55533332 466
Q ss_pred CccEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCC
Q 036119 370 LLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCP 445 (839)
Q Consensus 370 ~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 445 (839)
+|++|++++|. ..+..++.+++|++|++++|.... ..+......+++|+.|++.++.
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-------------------~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-------------------EIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------------EECTTTTTTCCEEEEEEEEETT
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc-------------------ccCHhhhhcccccCeeeccCCc
Confidence 77777777665 234567777777777777765211 0011112233344444443322
Q ss_pred CcccccccccccCCCCCCcCCceEEEeccCCCCCcccccc-CCCCCccEEeecCCCCCcc----cCCCCCCCCccEEEec
Q 036119 446 QLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL-LTLSSLTEMRIHDCASLVS----FPQAALPSQLRSVVIE 520 (839)
Q Consensus 446 ~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~----l~~~~~~~~L~~L~l~ 520 (839)
-.... ...+..+ ++|+.|++++|.. ..+|.++ ..+++|+.|++++|...+. .+....+++|+.|++.
T Consensus 160 l~~~~------~~~l~~l-~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 160 LRNYQ------SQSLKSI-RDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp CCEEC------TTTTTTC-SEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred ccccC------hhhhhcc-ccCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 11000 0111222 3566666666554 3333332 3466666666666543321 1112235566666666
Q ss_pred cCccccccchhhh--hCCCCccceEecccCCCCcC--C-----CCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcc
Q 036119 521 ECDALESLPEAWM--QNSNSSLECLAIRSCNSLVS--F-----PEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLE 591 (839)
Q Consensus 521 ~~~~l~~~~~~~~--~~~~~~L~~L~l~~~~~l~~--~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 591 (839)
++......+..+. ...+++|+.+++++|..... + .....+++ ++
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~---------------------------L~ 284 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK---------------------------VE 284 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT---------------------------CC
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc---------------------------cc
Confidence 6543222221110 02235556666655532210 0 01122334 44
Q ss_pred eEEEeecCCcccccC-----CCCcccccceeEeccCCCchhhhhhc--CCCCcceeeecccccccCccc---cccCCCCC
Q 036119 592 HLEVSYCSNLALLSR-----NGNLPQSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLENLKSLPA---DLHNLHHL 661 (839)
Q Consensus 592 ~L~l~~c~~l~~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L 661 (839)
.+.+.++........ .....++|+.|++++|. +..+|..+ ..++|+.|++++|++.+.+|. .+..+++|
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 444444322111000 01122457777777764 33444433 357777777777777665532 35677788
Q ss_pred CeEEecCCCCCcccC--CCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecC
Q 036119 662 QKIWIFGCPNLESFP--EEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHD 739 (839)
Q Consensus 662 ~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 739 (839)
++|++++|......+ ..+..+++|++|++++|+. ..+|..+..+++|++|++++|.+. .+|. ..+++|++|++++
T Consensus 364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~-~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT-CIPQTLEVLDVSN 440 (549)
T ss_dssp CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSCCS-CCCT-TSCTTCSEEECCS
T ss_pred cEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-ccCChhhcccccccEEECCCCCcc-cccc-hhcCCceEEECCC
Confidence 888888876543221 2355667788888887754 467777777788888888887764 3333 2346788888888
Q ss_pred CCCCCccccccCCCccccceEEEecCCCCCcCCCC--CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCc
Q 036119 740 LKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP--FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKL 814 (839)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l 814 (839)
|++.+.. ..+++|+.|++++| .+..+|. .+++|+.|++++|...+..|..+..+++|+.|++++|+-.
T Consensus 441 N~l~~~~-----~~l~~L~~L~Ls~N--~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 441 NNLDSFS-----LFLPRLQELYISRN--KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SCCSCCC-----CCCTTCCEEECCSS--CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred CChhhhc-----ccCChhcEEECCCC--ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 8776532 35667777777764 2334443 3567888888888776666666777888888888888643
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=302.00 Aligned_cols=468 Identities=16% Similarity=0.162 Sum_probs=326.9
Q ss_pred eeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCCCcc
Q 036119 296 LRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLE 372 (839)
Q Consensus 296 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~~L~ 372 (839)
..+.+.+++. +..+|..+. ++|++|++++|.+.+..|..+.. +++|++|++++| .+.+..|. .+++|+
T Consensus 7 ~~~c~~~~~~-l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 7 SGVCDGRSRS-FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRA-----CANLQVLILKSS-RINTIEGDAFYSLGSLE 77 (549)
T ss_dssp TSEEECTTSC-CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSS-----CTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CceEECCCCc-cccccccCC--CCccEEECcCCccCccChhhhhc-----CCcccEEECCCC-CcCccChhhccccccCC
Confidence 3456788888 899998775 79999999999998777777777 999999999996 66644443 567888
Q ss_pred EEeecccC--ccc-ccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCccc
Q 036119 373 TLDITSCD--QLL-VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLIS 449 (839)
Q Consensus 373 ~L~l~~~~--~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 449 (839)
+|++++|. .++ ..++.+++|++|++++|....+.. ......+
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------------------~~~~~~l---------------- 122 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-------------------TSLFPNL---------------- 122 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS-------------------SCSCTTC----------------
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccch-------------------hhhhhcc----------------
Confidence 99998886 343 448888999999998876322100 0001111
Q ss_pred ccccccccCCCCCCcCCceEEEeccCCCCCccc-cccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccc
Q 036119 450 LVTVEEHDQQQPELPCRLQFLELSCCEGLTRLP-QALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALES 527 (839)
Q Consensus 450 ~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~ 527 (839)
++|+.|++++|...+.+| ..++++++|++|++++|...+..+. ...+++|+.|+++++.. ..
T Consensus 123 ---------------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~ 186 (549)
T 2z81_A 123 ---------------TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AF 186 (549)
T ss_dssp ---------------TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TT
T ss_pred ---------------CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cc
Confidence 467777777776445554 4677777788888877765544443 33467777777777653 33
Q ss_pred cchhhhhCCCCccceEecccCCCCcC----CCCCCCCCCccEEEEcCCCCCcCCchhhhc-ccCCCCcceEEEeecCCcc
Q 036119 528 LPEAWMQNSNSSLECLAIRSCNSLVS----FPEVALPSQLRTIIIGGCHALESLPEAWMH-NELPATLEHLEVSYCSNLA 602 (839)
Q Consensus 528 ~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~L~~L~l~~c~~l~ 602 (839)
++..+. ..+++|+.|++++|..... .+....+++|+.|+++++......+..... .....+++.+++.+|....
T Consensus 187 ~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 187 LLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp HHHHHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred cchhhH-hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 443332 3467888888888765442 122345678888888887432221111110 0111478888888885322
Q ss_pred c--cc----CCCCcccccceeEeccCCCchhh-----hh-hcCCCCcceeeecccccccCccccc-cCCCCCCeEEecCC
Q 036119 603 L--LS----RNGNLPQSLKYLKIEDCSKLESL-----AE-RLDNTSLEEISISVLENLKSLPADL-HNLHHLQKIWIFGC 669 (839)
Q Consensus 603 ~--~~----~~~~~~~~L~~L~l~~~~~l~~~-----~~-~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~ 669 (839)
. ++ ......++++.|.+.++...... +. .....+|+.|++++|.+. .+|..+ ..+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 1 10 00123467899999887533211 11 011368999999999874 677666 57999999999999
Q ss_pred CCCcccC---CCCCCCCCcceEeccccccccccc---ccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCC
Q 036119 670 PNLESFP---EEGLPSTKLTELTIYDCENLKALP---NCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKI 742 (839)
Q Consensus 670 ~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~lp---~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 742 (839)
...+.+| ..+..+++|++|++++|+... ++ ..+..+++|++|++++|++. .+|.. ..+++|++|++++|.+
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 8877653 346778999999999997544 33 45889999999999999887 56654 6789999999999998
Q ss_pred CCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCC
Q 036119 743 SKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL 822 (839)
Q Consensus 743 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 822 (839)
.+... ...++|+.|++++| .+..++..+++|+.|++++|... .+|. ...+++|+.|++++| +++.+++..+
T Consensus 423 ~~l~~----~~~~~L~~L~Ls~N--~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~ 493 (549)
T 2z81_A 423 RVVKT----CIPQTLEVLDVSNN--NLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN-QLKSVPDGIF 493 (549)
T ss_dssp SCCCT----TSCTTCSEEECCSS--CCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSS-CCCCCCTTGG
T ss_pred ccccc----hhcCCceEEECCCC--ChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCC-ccCCcCHHHH
Confidence 74321 22368999999986 44555566779999999999664 7875 467999999999998 7788776533
Q ss_pred --CcccceeeecCCCC
Q 036119 823 --PKSLLQLHIYACPL 836 (839)
Q Consensus 823 --~~sL~~L~i~~c~~ 836 (839)
.++|+.|++++|+.
T Consensus 494 ~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GGCTTCCEEECCSSCB
T ss_pred hcCcccCEEEecCCCc
Confidence 46899999999974
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=304.85 Aligned_cols=435 Identities=17% Similarity=0.136 Sum_probs=204.0
Q ss_pred HHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP- 365 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp- 365 (839)
..|..+++|++|++++|. +..+ |..|+++++|++|++++|.+.+..|..+.. +++|++|++++| .+. .+|
T Consensus 46 ~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~-~l~~ 117 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-----LSSLQKLVAVET-NLA-SLEN 117 (570)
T ss_dssp TTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-----CTTCCEEECTTS-CCC-CSTT
T ss_pred hHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcC-----cccccccccccc-ccc-cCCC
Confidence 346667777777777776 4444 355667777777777777765555555555 777777777765 444 333
Q ss_pred ---cCCCCccEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCc
Q 036119 366 ---RRLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNW 438 (839)
Q Consensus 366 ---~~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~ 438 (839)
..+.+|++|++++|. .+|..++.+++|++|++++|....+.. ..+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~--- 171 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-----------------------TDLRV--- 171 (570)
T ss_dssp CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG-----------------------GGGHH---
T ss_pred ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH-----------------------HHccc---
Confidence 245566666666654 245566666666666666654221100 00000
Q ss_pred eecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCc-ccCC-CCCCCCc--
Q 036119 439 LQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLV-SFPQ-AALPSQL-- 514 (839)
Q Consensus 439 L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~-~~~~~~L-- 514 (839)
+..++...+.|++++|.+....+..+... +|+.|++++|.... .++. ...++.+
T Consensus 172 ---------------------l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~ 229 (570)
T 2z63_A 172 ---------------------LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229 (570)
T ss_dssp ---------------------HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEE
T ss_pred ---------------------hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccce
Confidence 00010122688888888765555555544 78999888763211 0000 0112222
Q ss_pred ------------------------------cEEEeccCcccc-ccchhhhhCCCCccceEecccCCCCcCCCC-CCCCCC
Q 036119 515 ------------------------------RSVVIEECDALE-SLPEAWMQNSNSSLECLAIRSCNSLVSFPE-VALPSQ 562 (839)
Q Consensus 515 ------------------------------~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~ 562 (839)
+.+.+.++..+. ..+..+ ..+++|+.|++++|... .+|. .... +
T Consensus 230 ~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~-~l~~~~~~~-~ 305 (570)
T 2z63_A 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIE-RVKDFSYNF-G 305 (570)
T ss_dssp EEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESCEEC-SCCBCCSCC-C
T ss_pred eeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh--cCcCcccEEEecCccch-hhhhhhccC-C
Confidence 223333321111 111111 22344555555444322 2331 2222 4
Q ss_pred ccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhh---hhhcCCCCcce
Q 036119 563 LRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESL---AERLDNTSLEE 639 (839)
Q Consensus 563 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~L~~ 639 (839)
|+.|++.+|.. ..+|.. .+ ++|+.|++.+|......+. ..+++|+.|++++|...... ......++|++
T Consensus 306 L~~L~l~~n~~-~~l~~~----~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 306 WQHLELVNCKF-GQFPTL----KL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp CSEEEEESCBC-SSCCBC----BC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred ccEEeeccCcc-cccCcc----cc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence 55555555432 233321 11 2455555554443332222 12234555555444322111 11122344444
Q ss_pred eeecccccccCccccccCCCCCCeEEecCCCCCcccC-CCCCCCCCcceEecccccccccccccCccccccccccccccc
Q 036119 640 ISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFP-EEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECP 718 (839)
Q Consensus 640 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 718 (839)
|++++|.+.+..+ .+..+++|++|++++|......+ ..+..+++|++|++++|...+..|..+..+++|++|++++|.
T Consensus 378 L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 378 LDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp EECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence 5554444433222 24444445555554444333222 233344445555554444444444444444445555554444
Q ss_pred CC-ccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccC
Q 036119 719 SV-VSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSI 796 (839)
Q Consensus 719 ~~-~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 796 (839)
+. ..+|.. ..+++|++|++++|.+.+..+.. +. .+++|+.|++++|...+..+..
T Consensus 457 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~----------------------~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FN----------------------SLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TT----------------------TCTTCCEEECCSSCCSCCCTTT
T ss_pred CccccchhhhhcccCCCEEECCCCccccCChhh-hh----------------------cccCCCEEeCCCCcCCCCCHHH
Confidence 43 123322 33444444444444444322211 11 1346777777777655555555
Q ss_pred CCCCCccCeeeccCCCCc
Q 036119 797 GENLTSLKTLRLSDCPKL 814 (839)
Q Consensus 797 ~~~l~~L~~L~l~~c~~l 814 (839)
+..+++|+.|++++|+--
T Consensus 514 ~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTCTTCCEEECCSSCBC
T ss_pred hhcccCCcEEEecCCccc
Confidence 667777777777776433
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.1e-32 Score=310.08 Aligned_cols=431 Identities=15% Similarity=0.168 Sum_probs=249.6
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccc---------------------------------cccccCCCCC
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKW---------------------------------EEWIPCGAGQ 340 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~---------------------------------~~~~p~~~~~ 340 (839)
.+++.|+|+++.+.+.+|.+|++|++|++|+|++|.+ .+..|..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4678888888886677888888888888888888854 1111111110
Q ss_pred --------------CccccCCCccEEeccC-ccccccCCCc---CCCCccEEeecccC--c------------------c
Q 036119 341 --------------EVDEVFPKLRTLSLDN-CCKLQGTLPR---RLLLLETLDITSCD--Q------------------L 382 (839)
Q Consensus 341 --------------~~~~~l~~L~~L~L~~-~~~l~~~lp~---~l~~L~~L~l~~~~--~------------------l 382 (839)
........++.+.+.. ++++++ +|. .+++|++|+++++. . +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 0000012233333332 457776 885 56788888888776 3 6
Q ss_pred cccCC--CCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCC
Q 036119 383 LVTIQ--CLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQ 460 (839)
Q Consensus 383 ~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 460 (839)
|..++ ++++|++|++++|.... .++..+.+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~-----------------------~~p~~l~~------------------------- 271 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLT-----------------------KLPTFLKA------------------------- 271 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCS-----------------------SCCTTTTT-------------------------
T ss_pred chhhhhcccCCCCEEEecCCcCCc-----------------------cChHHHhc-------------------------
Confidence 66666 77777777777664221 01111111
Q ss_pred CCCcCCceEEEeccCC-CCC-ccccccCCC------CCccEEeecCCCCCcccCC---CCCCCCccEEEeccCccccccc
Q 036119 461 PELPCRLQFLELSCCE-GLT-RLPQALLTL------SSLTEMRIHDCASLVSFPQ---AALPSQLRSVVIEECDALESLP 529 (839)
Q Consensus 461 ~~l~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~ 529 (839)
+ ++|+.|++++|. +.+ .+|..++.+ ++|+.|++++|... .+|. ...+++|+.|++++|.....+|
T Consensus 272 --l-~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 272 --L-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp --C-SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred --C-CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 1 366777777776 544 566666554 67777777776443 5554 4456666666666665443554
Q ss_pred hhhhhCCCCccceEecccCCCCcCCC-CCCCCCC-ccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCC
Q 036119 530 EAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQ-LRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRN 607 (839)
Q Consensus 530 ~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 607 (839)
.+ ..+++|+.|++++|... .+| .+..+++ |+.|++++|. +..+|..+...
T Consensus 348 -~~--~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~----------------------- 399 (636)
T 4eco_A 348 -AF--GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAK----------------------- 399 (636)
T ss_dssp -CC--EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTT-----------------------
T ss_pred -hh--CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-Ccccchhhhhc-----------------------
Confidence 22 33456666666665433 333 2233344 5555555543 22333211100
Q ss_pred CCcccccceeEeccCCCchhhhhhc--------CCCCcceeeecccccccCcccc-ccCCCCCCeEEecCCCCCcccCCC
Q 036119 608 GNLPQSLKYLKIEDCSKLESLAERL--------DNTSLEEISISVLENLKSLPAD-LHNLHHLQKIWIFGCPNLESFPEE 678 (839)
Q Consensus 608 ~~~~~~L~~L~l~~~~~l~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~ 678 (839)
..++|+.|++++|......|..+ ..++|+.|++++|.+. .+|.. +..+++|++|++++|.+. .+|..
T Consensus 400 --~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 475 (636)
T 4eco_A 400 --SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKN 475 (636)
T ss_dssp --CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred --ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHH
Confidence 01246666666665544443322 2357777777777776 34433 445777888888877665 55554
Q ss_pred CCCC--------CCcceEecccccccccccccCc--ccccccccccccccCCccCCCC-CCCCCcceEEecC------CC
Q 036119 679 GLPS--------TKLTELTIYDCENLKALPNCMH--NLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHD------LK 741 (839)
Q Consensus 679 ~~~~--------~~L~~L~l~~~~~l~~lp~~l~--~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~------~~ 741 (839)
.... ++|++|++++|... .+|..+. .+++|+.|++++|++.. +|.. ..+++|++|++++ |.
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 3332 27777888777544 6777665 77777778887777765 5543 5677777777754 33
Q ss_pred CCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCC
Q 036119 742 ISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQG 821 (839)
Q Consensus 742 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 821 (839)
+.+.+|.. +. -+++|+.|++++|.. +.+|..+. ++|+.|++++| .+..+...+
T Consensus 554 l~~~~p~~-l~----------------------~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N-~l~~~~~~~ 606 (636)
T 4eco_A 554 TLREWPEG-IT----------------------LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN-PNISIDLSY 606 (636)
T ss_dssp CCCCCCTT-GG----------------------GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC-TTCEEECTT
T ss_pred ccccChHH-Hh----------------------cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC-CCccccHHh
Confidence 33333321 01 134788888888877 77887654 78999999998 445554333
Q ss_pred CC----------cccceeeecCCCCCC
Q 036119 822 LP----------KSLLQLHIYACPLIE 838 (839)
Q Consensus 822 ~~----------~sL~~L~i~~c~~l~ 838 (839)
+. ...+..++.+|+.|+
T Consensus 607 ~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 607 VCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp THHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cchhhhcccceeecCCccccCCCcccc
Confidence 31 122456788998875
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.7e-31 Score=306.58 Aligned_cols=429 Identities=16% Similarity=0.147 Sum_probs=255.1
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEe-cCccccccccCCCCCC-------------------------------
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNL-SRTKWEEWIPCGAGQE------------------------------- 341 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L-~~~~~~~~~p~~~~~~------------------------------- 341 (839)
.++..|+|+++.+.+.+|.+|++|++|++|+| ++|.+.+..|......
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999977899999999999999999 8887655433221000
Q ss_pred -------------cc--ccCCCccEEeccC-ccccccCCCc---CCCCccEEeecccC--c------------------c
Q 036119 342 -------------VD--EVFPKLRTLSLDN-CCKLQGTLPR---RLLLLETLDITSCD--Q------------------L 382 (839)
Q Consensus 342 -------------~~--~~l~~L~~L~L~~-~~~l~~~lp~---~l~~L~~L~l~~~~--~------------------l 382 (839)
.+ .....++.+.+.. ++.+++ +|. .+++|+.|+++++. . +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 0122333333333 246665 885 56788888888775 2 3
Q ss_pred cccCC--CCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCC
Q 036119 383 LVTIQ--CLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQ 460 (839)
Q Consensus 383 ~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 460 (839)
|..++ .++
T Consensus 482 P~~l~f~~L~---------------------------------------------------------------------- 491 (876)
T 4ecn_A 482 NEELSWSNLK---------------------------------------------------------------------- 491 (876)
T ss_dssp TSCCCGGGCT----------------------------------------------------------------------
T ss_pred ChhhhhccCC----------------------------------------------------------------------
Confidence 33333 444
Q ss_pred CCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCC-CCc-ccC--------CCCCCCCccEEEeccCccccccch
Q 036119 461 PELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCA-SLV-SFP--------QAALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 461 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~l~--------~~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
+|+.|++++|.+.+.+|..++++++|+.|++++|. ..+ .+| ....+++|+.|++++|... .+|.
T Consensus 492 -----~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 492 -----DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp -----TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred -----CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 44555555555445555555555555555555554 211 122 1223445555555555433 4443
Q ss_pred --hhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCC-cceEEEeecCCcccccCC
Q 036119 531 --AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPAT-LEHLEVSYCSNLALLSRN 607 (839)
Q Consensus 531 --~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~ 607 (839)
.+ ..+++|+.|++++|... .+|.+..+++|+.|++++|.. ..+|..+... ++ |+.|++++|... .++..
T Consensus 566 ~~~l--~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~~l~~l---~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 566 SASL--QKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAF---TDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp HHHH--TTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCTTSCEE---CTTCCEEECCSSCCC-SCCSC
T ss_pred hhhh--hcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchHHHhhc---cccCCEEECcCCCCC-cCchh
Confidence 22 34555666666555443 455445555566666655542 2444332221 23 555555555422 33332
Q ss_pred CCcc--cccceeEeccCCCchhhhhhc------CCCCcceeeecccccccCccccc-cCCCCCCeEEecCCCCCcccCCC
Q 036119 608 GNLP--QSLKYLKIEDCSKLESLAERL------DNTSLEEISISVLENLKSLPADL-HNLHHLQKIWIFGCPNLESFPEE 678 (839)
Q Consensus 608 ~~~~--~~L~~L~l~~~~~l~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~ 678 (839)
.... ++|+.|++++|.....++... ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+. .+|..
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 2222 237777777776544333211 2357888888888876 455544 47888888888888655 66654
Q ss_pred CCC--------CCCcceEecccccccccccccCc--ccccccccccccccCCccCCCC-CCCCCcceEEecCCC------
Q 036119 679 GLP--------STKLTELTIYDCENLKALPNCMH--NLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLK------ 741 (839)
Q Consensus 679 ~~~--------~~~L~~L~l~~~~~l~~lp~~l~--~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~------ 741 (839)
... +++|+.|++++|+.. .+|..+. .+++|+.|++++|++.. +|.. ..+++|+.|++++|+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 433 237888888888544 6777776 78888888888888765 5543 667888888887643
Q ss_pred CCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCC
Q 036119 742 ISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQG 821 (839)
Q Consensus 742 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 821 (839)
+.+.+|.. +. -+++|+.|++++|.. +.+|..+. ++|+.|+|++|+ +..+....
T Consensus 794 l~~~ip~~-l~----------------------~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~-l~~i~~~~ 846 (876)
T 4ecn_A 794 ILRQWPTG-IT----------------------TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP-NISIDVTS 846 (876)
T ss_dssp CCCCCCTT-GG----------------------GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT-TCEEECGG
T ss_pred ccccChHH-Hh----------------------cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC-CCccChHH
Confidence 33333221 00 135799999999977 88887764 699999999995 55554333
Q ss_pred CCc-------c---cceeeecCCCCCC
Q 036119 822 LPK-------S---LLQLHIYACPLIE 838 (839)
Q Consensus 822 ~~~-------s---L~~L~i~~c~~l~ 838 (839)
+.+ . -+..+|.+|+.|+
T Consensus 847 ~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 847 VCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp GHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred ccccccchheeecCCCccccCCCCCcc
Confidence 311 1 1334688998764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=298.10 Aligned_cols=473 Identities=15% Similarity=0.070 Sum_probs=285.2
Q ss_pred CceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCC
Q 036119 294 PRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLL 369 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~ 369 (839)
+++++|++++|. +..++ .+|.++++|++|++++|.+.+..|..+.. +++|++|++++| .+++..|. .+.
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-----LSHLSTLILTGN-PIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTT-----CTTCCEEECTTC-CCCEECTTTTTTCT
T ss_pred ccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccC-----chhCCEEeCcCC-cCCccCHhhhcCcc
Confidence 478999999998 66554 57889999999999999887666666666 899999999986 55533332 456
Q ss_pred CccEEeecccC--cccc-cCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCC
Q 036119 370 LLETLDITSCD--QLLV-TIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQ 446 (839)
Q Consensus 370 ~L~~L~l~~~~--~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 446 (839)
+|++|+++++. .++. .++.+++|++|++++|....+. ++..
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~----------------------lp~~-------------- 144 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----------------------LPEY-------------- 144 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC----------------------CCGG--------------
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceec----------------------Chhh--------------
Confidence 77777777665 2332 4677777777777776422100 0000
Q ss_pred cccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCc----cEEeecCCCCCcccCCCCCCCCccEEEeccC
Q 036119 447 LISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSL----TEMRIHDCASLVSFPQAALPSQLRSVVIEEC 522 (839)
Q Consensus 447 l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~ 522 (839)
+..+ ++|+.|++++|.+....+..++.+++| ..|++++|......+......+|+.|++.++
T Consensus 145 -------------~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 145 -------------FSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp -------------GGGC-TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred -------------hccc-CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 1111 588999999998866666677777777 8899999865554444444558999999887
Q ss_pred cccc-ccchhhhhCCCCccceEecccC-----CCCcCCCC--CCCC--CCccEEEEcCCCCCcCCchhhhcccCCCCcce
Q 036119 523 DALE-SLPEAWMQNSNSSLECLAIRSC-----NSLVSFPE--VALP--SQLRTIIIGGCHALESLPEAWMHNELPATLEH 592 (839)
Q Consensus 523 ~~l~-~~~~~~~~~~~~~L~~L~l~~~-----~~l~~~~~--~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 592 (839)
.... .++..+ ..++.++...+... ..+..++. +..+ ..++.+.+.++..+.......+... ++|+.
T Consensus 211 ~~~~~~~~~~~--~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l--~~L~~ 286 (570)
T 2z63_A 211 FDSLNVMKTCI--QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL--TNVSS 286 (570)
T ss_dssp CSCTTHHHHHH--HTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG--TTCSE
T ss_pred cccccchhhhh--cCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc--CcccE
Confidence 4221 112111 23344433332211 01111110 0000 1244555554422222111111111 35666
Q ss_pred EEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCC
Q 036119 593 LEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNL 672 (839)
Q Consensus 593 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 672 (839)
|++.+|... .++...... +|+.|++.+|... .++. ...++|+.|++++|...+..+. ..+++|++|++++|...
T Consensus 287 L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 287 FSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp EEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCB
T ss_pred EEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccC
Confidence 666666422 333322223 5666666666433 3333 2446667777776666554443 45667777777776554
Q ss_pred ccc--CCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCC--CCCCCCcceEEecCCCCCCcccc
Q 036119 673 ESF--PEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE--DGFPTNLQSLDVHDLKISKPLLE 748 (839)
Q Consensus 673 ~~~--~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~ 748 (839)
... +..+..+++|++|++++|...+ +|..+..+++|++|++++|.+....+. ...+++|++|++++|.+.+..+.
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 322 3344556677777777765433 333466677777777777666544442 24566777777777766654332
Q ss_pred ccCCCccccceEEEecCCCCCcCCC---CCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCC--C
Q 036119 749 WGSNRFTSLRRFTIWGGCPDLVSPP---PFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL--P 823 (839)
Q Consensus 749 ~~~~~l~~L~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~ 823 (839)
.+..+++|+.|++++|......+| ..+++|+.|++++|...+..|..+..+++|+.|++++| +++.+++..+ .
T Consensus 440 -~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 517 (570)
T 2z63_A 440 -IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRL 517 (570)
T ss_dssp -TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred -hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcc
Confidence 345566777777766422111122 23568999999999888777888899999999999999 7888876543 3
Q ss_pred cccceeeecCCCC
Q 036119 824 KSLLQLHIYACPL 836 (839)
Q Consensus 824 ~sL~~L~i~~c~~ 836 (839)
++|++|++++|+.
T Consensus 518 ~~L~~L~l~~N~~ 530 (570)
T 2z63_A 518 TSLQKIWLHTNPW 530 (570)
T ss_dssp TTCCEEECCSSCB
T ss_pred cCCcEEEecCCcc
Confidence 6899999999763
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=287.39 Aligned_cols=416 Identities=21% Similarity=0.240 Sum_probs=195.3
Q ss_pred CCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCcc
Q 036119 293 LPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLE 372 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~ 372 (839)
.++|++|++++|. ++.+|.+|+++++|++|++++|.+.+.+|.+++. +++|+.+++.+|.. .+++
T Consensus 10 ~~~L~~L~l~~n~-l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-----l~~L~~l~l~~c~~---------~~l~ 74 (454)
T 1jl5_A 10 NTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-----QREMAVSRLRDCLD---------RQAH 74 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCC-----CHHHHHHHHHHHHH---------HTCS
T ss_pred cccchhhhcccCc-hhhCChhHhcccchhhhhccCCcccccCCccccc-----chhcchhhhhhhhc---------cCCC
Confidence 5889999999999 7999999999999999999999999899998887 77764444443310 2233
Q ss_pred EEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccc
Q 036119 373 TLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450 (839)
Q Consensus 373 ~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 450 (839)
+|+++++. .+|. ..++|++|++++|.... ++..+++|+.|+++++. +
T Consensus 75 ~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~------------------------lp~~~~~L~~L~l~~n~-l--- 123 (454)
T 1jl5_A 75 ELELNNLGLSSLPE---LPPHLESLVASCNSLTE------------------------LPELPQSLKSLLVDNNN-L--- 123 (454)
T ss_dssp EEECTTSCCSCCCS---CCTTCSEEECCSSCCSS------------------------CCCCCTTCCEEECCSSC-C---
T ss_pred EEEecCCccccCCC---CcCCCCEEEccCCcCCc------------------------cccccCCCcEEECCCCc-c---
Confidence 44443332 1111 12345555555443211 11112334444443321 0
Q ss_pred cccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccch
Q 036119 451 VTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 451 ~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
..++.+|++|+.|++++|.+. .+| .++.+++|++|++++|. ++.+|. .+++|+.|++++|. ++.+|.
T Consensus 124 -------~~l~~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~-l~~lp~--~~~~L~~L~L~~n~-l~~l~~ 190 (454)
T 1jl5_A 124 -------KALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNNQ-LEELPE 190 (454)
T ss_dssp -------SCCCSCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCC
T ss_pred -------CcccCCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCc-CcccCC--CcccccEEECcCCc-CCcCcc
Confidence 122333357888888887774 466 47788888888888774 333443 23566777766664 233442
Q ss_pred hhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCc
Q 036119 531 AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNL 610 (839)
Q Consensus 531 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 610 (839)
+ ..+++|+.|++++|... .+|. .+++|+.|++++| . +..++. ...
T Consensus 191 -~--~~l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~l~~n---------------------------~-l~~lp~-~~~ 235 (454)
T 1jl5_A 191 -L--QNLPFLTAIYADNNSLK-KLPD--LPLSLESIVAGNN---------------------------I-LEELPE-LQN 235 (454)
T ss_dssp -C--TTCTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSS---------------------------C-CSSCCC-CTT
T ss_pred -c--cCCCCCCEEECCCCcCC-cCCC--CcCcccEEECcCC---------------------------c-CCcccc-cCC
Confidence 1 44556666666555322 2321 1234444444444 2 122222 222
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+++|+.|++++|... .++. ..++|+.|++++|++.+ +|. .+++|++|++++|...+ +|.. .++|+.|++
T Consensus 236 l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l 304 (454)
T 1jl5_A 236 LPFLTTIYADNNLLK-TLPD--LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSG-LSEL---PPNLYYLNA 304 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCS--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSE-ESCC---CTTCCEEEC
T ss_pred CCCCCEEECCCCcCC-cccc--cccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccCc-ccCc---CCcCCEEEC
Confidence 356777777776432 2332 13678888888887755 443 24778888888886543 3321 257888888
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCc
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 770 (839)
++|...+ ++.. .++|+.|++++|.+.. +|. .+++|++|++++|.+.+ ++. .+++|+.|++++| .+.
T Consensus 305 ~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~--~~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L~~N--~l~ 370 (454)
T 1jl5_A 305 SSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPA--LPPRLERLIASFNHLAE-VPE----LPQNLKQLHVEYN--PLR 370 (454)
T ss_dssp CSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSS--CCS
T ss_pred cCCcCCc-ccCC---cCcCCEEECCCCcccc-ccc--cCCcCCEEECCCCcccc-ccc----hhhhccEEECCCC--CCC
Confidence 8876443 3321 1478888888887654 554 36788888888887764 332 3566666666653 333
Q ss_pred CCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCC
Q 036119 771 SPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 771 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
.++.+|..+..|. .|...+.+|. .+++|+.|++++| .++.++. +|++++.|.+.+|.
T Consensus 371 ~l~~ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 371 EFPDIPESVEDLR--MNSHLAEVPE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp SCCCCCTTCCEEE--CCC-----------------------------------------------
T ss_pred cCCCChHHHHhhh--hccccccccc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCcc
Confidence 4444455555443 2334444443 2488999999998 6666644 77889999888764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=307.00 Aligned_cols=105 Identities=23% Similarity=0.236 Sum_probs=80.1
Q ss_pred CcceeeecccccccCcccccc--CCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc------ccccccccccCcccc
Q 036119 636 SLEEISISVLENLKSLPADLH--NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD------CENLKALPNCMHNLT 707 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~lp~~l~~l~ 707 (839)
+|+.|++++|++. .+|..+. .+++|+.|++++|.+.. +|..+..+++|+.|++++ |...+.+|..+.+++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 6777777777665 5666665 78888888888886655 677777778888888866 556777888888888
Q ss_pred cccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 708 SLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 708 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
+|+.|++++|++ ..+|.. ..++|+.|++++|++..
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp SCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 888888888888 667765 34688888888888764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=303.26 Aligned_cols=104 Identities=23% Similarity=0.235 Sum_probs=77.2
Q ss_pred CcceeeecccccccCcccccc--CCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc------cccccccccccCcccc
Q 036119 636 SLEEISISVLENLKSLPADLH--NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY------DCENLKALPNCMHNLT 707 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~l~~lp~~l~~l~ 707 (839)
+|+.|++++|++. .+|..+. .+++|++|++++|.+.+ +|..+..+++|++|+++ +|+..+.+|..+..++
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 6777777777766 5666665 77888888888886665 77777777888888884 4556677788888888
Q ss_pred cccccccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 708 SLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 708 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
+|++|++++|.+ +.+|.. ..++|++|++++|++.
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp SCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTC
T ss_pred CCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCc
Confidence 888888888887 566654 3378888888888765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=294.87 Aligned_cols=432 Identities=15% Similarity=0.130 Sum_probs=282.3
Q ss_pred cccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCC
Q 036119 263 EHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQE 341 (839)
Q Consensus 263 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~ 341 (839)
++|+.| .++.+.+. ..++..|..+++|++|++++|. +..+ |..|+++++|++|++++|.+. .+|.. .
T Consensus 21 ~~L~~L------~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~- 88 (520)
T 2z7x_B 21 QKTTIL------NISQNYIS-ELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P- 88 (520)
T ss_dssp TTCSEE------ECCSSCCC-CCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C-
T ss_pred ccccEE------ECCCCccc-ccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee-ecCcc--c-
Confidence 677877 44444432 3345679999999999999999 5555 789999999999999999995 57765 4
Q ss_pred ccccCCCccEEeccCcccccc-CCCc---CCCCccEEeecccCcccccCCCCCCc--cEEEeccccceeecCCCccceee
Q 036119 342 VDEVFPKLRTLSLDNCCKLQG-TLPR---RLLLLETLDITSCDQLLVTIQCLPAL--SELQIDGCKRVVFSSPHLVHAVN 415 (839)
Q Consensus 342 ~~~~l~~L~~L~L~~~~~l~~-~lp~---~l~~L~~L~l~~~~~l~~~l~~l~~L--~~L~l~~~~~~~~~~~~~l~~l~ 415 (839)
+++|++|++++| .+++ .+|. .+++|++|+++++.--...++.+++| ++|++++|....
T Consensus 89 ----l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~----------- 152 (520)
T 2z7x_B 89 ----TVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG----------- 152 (520)
T ss_dssp ----CCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTT-----------
T ss_pred ----cCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccc-----------
Confidence 999999999997 5654 4564 67899999999987444667778888 999999886310
Q ss_pred ecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCcccc-ccCCCCCccEE
Q 036119 416 VREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQ-ALLTLSSLTEM 494 (839)
Q Consensus 416 l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L 494 (839)
....+..+..++ .+...+++++|...+.++. .+..+++|+.|
T Consensus 153 ----------~~~~~~~l~~l~---------------------------~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 153 ----------EKEDPEGLQDFN---------------------------TESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp ----------SSCCTTTTTTCC---------------------------EEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred ----------cccccccccccc---------------------------cceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 001112222221 2344567788877665554 56789999999
Q ss_pred eecCCC-------CCcccCCCCCCCCccEEEeccCccccccchhhh-hCCCCccceEecccCCCCcCCCC-C-----CCC
Q 036119 495 RIHDCA-------SLVSFPQAALPSQLRSVVIEECDALESLPEAWM-QNSNSSLECLAIRSCNSLVSFPE-V-----ALP 560 (839)
Q Consensus 495 ~l~~~~-------~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~-----~~~ 560 (839)
++++|. ..+.++....+++|+.|.+.+|........... ....++|+.|++++|.....+|. . ..+
T Consensus 196 ~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l 275 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275 (520)
T ss_dssp CEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred cccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence 999985 334455556789999999998764432221111 01236899999999876656663 2 456
Q ss_pred CCccEEEEcCCCCCcCCchhhhcccC-CCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcce
Q 036119 561 SQLRTIIIGGCHALESLPEAWMHNEL-PATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEE 639 (839)
Q Consensus 561 ~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 639 (839)
++|+.++++++.. .+|...+...+ ..+++.|++++|..... +.....++|++
T Consensus 276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~ 328 (520)
T 2z7x_B 276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-------------------------LCPSKISPFLH 328 (520)
T ss_dssp CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-------------------------CCCSSCCCCCE
T ss_pred ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-------------------------cchhhCCcccE
Confidence 6777777777654 45422211100 02355555555532111 10013356666
Q ss_pred eeecccccccCccccccCCCCCCeEEecCCCCCc--ccCCCCCCCCCcceEeccccccccccccc-Cccccccccccccc
Q 036119 640 ISISVLENLKSLPADLHNLHHLQKIWIFGCPNLE--SFPEEGLPSTKLTELTIYDCENLKALPNC-MHNLTSLLNLKISE 716 (839)
Q Consensus 640 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~ 716 (839)
|++++|++.+.+|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|...+.+|.. +..+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 7777777766667777778888888888876654 44555666778888888887766656654 67778888888888
Q ss_pred ccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccC
Q 036119 717 CPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSI 796 (839)
Q Consensus 717 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 796 (839)
|.+...+|.. .+++|++|++++|.+.. +|.... .++ +|+.|++++|... .+|..
T Consensus 409 N~l~~~~~~~-l~~~L~~L~Ls~N~l~~-ip~~~~-~l~----------------------~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 409 NILTDTIFRC-LPPRIKVLDLHSNKIKS-IPKQVV-KLE----------------------ALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp SCCCGGGGGS-CCTTCCEEECCSSCCCC-CCGGGG-GCT----------------------TCCEEECCSSCCC-CCCTT
T ss_pred CCCCcchhhh-hcccCCEEECCCCcccc-cchhhh-cCC----------------------CCCEEECCCCcCC-ccCHH
Confidence 8776555542 22678888888887763 333211 233 4556666666443 45544
Q ss_pred -CCCCCccCeeeccCCC
Q 036119 797 -GENLTSLKTLRLSDCP 812 (839)
Q Consensus 797 -~~~l~~L~~L~l~~c~ 812 (839)
+..+++|+.|++++|+
T Consensus 463 ~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccCCcccEEECcCCC
Confidence 5666677777777664
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=287.90 Aligned_cols=429 Identities=16% Similarity=0.124 Sum_probs=222.9
Q ss_pred CceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-CCCCc
Q 036119 294 PRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR-RLLLL 371 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~l~~L 371 (839)
++|++|++++|. +..+| .+|.++++|++|++++|.+.+..|..+.. +++|++|++++| .++ .+|. .+.+|
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~-~lp~~~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-----NQDLEYLDVSHN-RLQ-NISCCPMASL 123 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-----CTTCCEEECTTS-CCC-EECSCCCTTC
T ss_pred CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-----CCCCCEEECCCC-cCC-ccCccccccC
Confidence 567777777777 55544 56777777777777777776655665555 777777777775 454 4553 55666
Q ss_pred cEEeecccC--c--ccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCc
Q 036119 372 ETLDITSCD--Q--LLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQL 447 (839)
Q Consensus 372 ~~L~l~~~~--~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 447 (839)
++|++++|. . .|..++.+++|++|++++|.... ..+
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--------------------------~~~-------------- 163 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--------------------------LDL-------------- 163 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--------------------------TTT--------------
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcccc--------------------------Cch--------------
Confidence 666666665 2 23456666666666666653110 000
Q ss_pred ccccccccccCCCCCCcCCceEEEeccCCC--CCccccccCCCCC-ccEEeecCCCCCcccCC--CCCCCCccEEEeccC
Q 036119 448 ISLVTVEEHDQQQPELPCRLQFLELSCCEG--LTRLPQALLTLSS-LTEMRIHDCASLVSFPQ--AALPSQLRSVVIEEC 522 (839)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~--~~~~~~~l~~l~~-L~~L~l~~~~~~~~l~~--~~~~~~L~~L~l~~~ 522 (839)
..++.+ +|+.|++++|.+ ....|.++..+.. .-.+++++|.....++. ...+++|+.+++++|
T Consensus 164 ----------~~l~~L--~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 231 (562)
T 3a79_B 164 ----------LPVAHL--HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231 (562)
T ss_dssp ----------GGGTTS--CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred ----------hhhhhc--eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence 001111 348888888777 5666666655441 11345555544433322 123566667776665
Q ss_pred cc----ccccchhhhhCCCCccceEecccCCCCcC----CCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEE
Q 036119 523 DA----LESLPEAWMQNSNSSLECLAIRSCNSLVS----FPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLE 594 (839)
Q Consensus 523 ~~----l~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 594 (839)
.. +......+ ...+.|+.+++.++..... ++.....++|++|++++|.....+|...+... ..+++.
T Consensus 232 ~~~~~~l~~~~~~l--~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~-~~~L~~-- 306 (562)
T 3a79_B 232 DENCQRLMTFLSEL--TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS-ETALKS-- 306 (562)
T ss_dssp STTHHHHHHHHHHH--HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC-SCSCCE--
T ss_pred ccccchHHHHHHHH--hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc-cccchh--
Confidence 31 11111111 2345555555554422110 01011112445555544432223332221110 012222
Q ss_pred EeecCCcccccCCCCcccccceeEeccCCC-c--hhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCC
Q 036119 595 VSYCSNLALLSRNGNLPQSLKYLKIEDCSK-L--ESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPN 671 (839)
Q Consensus 595 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~-l--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 671 (839)
|+.+++..+.. + ..+...+...+++.|++++|.+.... ....+++|++|++++|..
T Consensus 307 -------------------L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 307 -------------------LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp -------------------EEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred -------------------eehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcc
Confidence 22222222221 0 01111122356777777777654322 114677788888888777
Q ss_pred CcccCCCCCCCCCcceEecccccccc--cccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCccc
Q 036119 672 LESFPEEGLPSTKLTELTIYDCENLK--ALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 672 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 747 (839)
.+..|..+..+++|++|++++|+..+ .+|..+..+++|+.|++++|.+...+|.. ..+++|++|++++|.+.+.++
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 76677777777788888887776543 34456777788888888887776545543 556778888888887765443
Q ss_pred cccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCC--CCCcc
Q 036119 748 EWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQ--GLPKS 825 (839)
Q Consensus 748 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~s 825 (839)
.. + +++|+.|++++|.. +.+|..+..+++|+.|++++| +++.+|.. +-.++
T Consensus 446 ~~----l---------------------~~~L~~L~L~~N~l-~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 446 RC----L---------------------PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTS 498 (562)
T ss_dssp SS----C---------------------CTTCSEEECCSSCC-CCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTT
T ss_pred hh----h---------------------cCcCCEEECCCCcC-cccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCC
Confidence 21 1 12455555555522 244444445555555555554 44444442 11234
Q ss_pred cceeeecCCC
Q 036119 826 LLQLHIYACP 835 (839)
Q Consensus 826 L~~L~i~~c~ 835 (839)
|+.|++++||
T Consensus 499 L~~L~l~~N~ 508 (562)
T 3a79_B 499 LQYIWLHDNP 508 (562)
T ss_dssp CCCEECCSCC
T ss_pred CCEEEecCCC
Confidence 5555555544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=278.76 Aligned_cols=383 Identities=15% Similarity=0.092 Sum_probs=229.2
Q ss_pred cccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCC
Q 036119 263 EHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQE 341 (839)
Q Consensus 263 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~ 341 (839)
++++.| .++.|.+. ..++..|..+++|++|++++|. +..+ |..|+++++|++|++++|.+. .+|.. .
T Consensus 52 ~~L~~L------~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~- 119 (562)
T 3a79_B 52 PRTKAL------SLSQNSIS-ELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P- 119 (562)
T ss_dssp TTCCEE------ECCSSCCC-CCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCC-EECSC--C-
T ss_pred CCcCEE------ECCCCCcc-ccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--c-
Confidence 677777 34444332 3345678999999999999999 6665 788999999999999999995 67765 4
Q ss_pred ccccCCCccEEeccCcccccc-CCCc---CCCCccEEeecccCcccccCCCCCCc--cEEEeccccc--eeecCCCccce
Q 036119 342 VDEVFPKLRTLSLDNCCKLQG-TLPR---RLLLLETLDITSCDQLLVTIQCLPAL--SELQIDGCKR--VVFSSPHLVHA 413 (839)
Q Consensus 342 ~~~~l~~L~~L~L~~~~~l~~-~lp~---~l~~L~~L~l~~~~~l~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~l~~ 413 (839)
+++|++|++++| .+.+ .+|. .+++|++|+++++.--...+..+++| ++|++++|.. ...
T Consensus 120 ----l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~-------- 186 (562)
T 3a79_B 120 ----MASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG-------- 186 (562)
T ss_dssp ----CTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSS--------
T ss_pred ----cccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccccccccc--------
Confidence 999999999997 5653 3343 67899999999987444456666666 9999998863 110
Q ss_pred eeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCcccc-ccCCCCCcc
Q 036119 414 VNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQ-ALLTLSSLT 492 (839)
Q Consensus 414 l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~ 492 (839)
.+..+..+. ...-.+++++|.+...++. .+..+++|+
T Consensus 187 ---------------~~~~l~~l~---------------------------~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 187 ---------------ETESLQIPN---------------------------TTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp ---------------SCCEEEECC---------------------------EEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred ---------------CcccccccC---------------------------cceEEEEecCccchhhhhhhcccccceEE
Confidence 001111110 1122567888877665554 566899999
Q ss_pred EEeecCCCC-----CcccCCCCCCCCccEEEeccCccccc----cchhhhhCCCCccceEecccCCCCcCCCCC------
Q 036119 493 EMRIHDCAS-----LVSFPQAALPSQLRSVVIEECDALES----LPEAWMQNSNSSLECLAIRSCNSLVSFPEV------ 557 (839)
Q Consensus 493 ~L~l~~~~~-----~~~l~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~------ 557 (839)
.+++++|.. ...++....+++|+.+.+.++..... ++.. ...++|++|++++|.....+|..
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~ip~~~~~~~~ 301 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF---FWPRPVEYLNIYNLTITERIDREEFTYSE 301 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH---HTTSSEEEEEEEEEEECSCCCCCCCCCCS
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh---hhcccccEEEEeccEeeccccchhhhccc
Confidence 999998741 11222234578888898887653221 1221 22358999999999876666642
Q ss_pred CCCCCccEEEEcCCCCCcCCchhhhcccC-CCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCC
Q 036119 558 ALPSQLRTIIIGGCHALESLPEAWMHNEL-PATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTS 636 (839)
Q Consensus 558 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 636 (839)
..++.|+.+++..+.. .+|.......+ ..+++.|++++|....... ...+ ++
T Consensus 302 ~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l-----------------------~~ 354 (562)
T 3a79_B 302 TALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP-----------------------SS 354 (562)
T ss_dssp CSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC-----------------------CC
T ss_pred ccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCC-----------------------CC
Confidence 2333444444444432 44432221110 0246666666664321110 0122 44
Q ss_pred cceeeecccccccCccccccCCCCCCeEEecCCCCCc--ccCCCCCCCCCcceEecccccccccccc-cCcccccccccc
Q 036119 637 LEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLE--SFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLK 713 (839)
Q Consensus 637 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~ 713 (839)
|++|++++|.+.+.+|..+..+++|++|++++|.... .+|..+..+++|++|++++|...+.+|. .+..+++|++|+
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 5555555555555555555566666666666664443 2233445555666666666654443443 245556666666
Q ss_pred cccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 714 ISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 714 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
+++|.+....|.. .+++|++|++++|.+.
T Consensus 435 l~~n~l~~~~~~~-l~~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 435 LSSNMLTGSVFRC-LPPKVKVLDLHNNRIM 463 (562)
T ss_dssp CCSSCCCGGGGSS-CCTTCSEEECCSSCCC
T ss_pred CCCCCCCcchhhh-hcCcCCEEECCCCcCc
Confidence 6666555444332 1146666666666554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=276.28 Aligned_cols=496 Identities=16% Similarity=0.066 Sum_probs=263.4
Q ss_pred ceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc----CCC
Q 036119 295 RLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR----RLL 369 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~----~l~ 369 (839)
.+++|+|++|. +..+| .+|.++++|++|+|++|.+.+..|.++.. +++|++|+|++| +++ .+|. .+.
T Consensus 53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~-----L~~L~~L~Ls~N-~l~-~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-----LSHLSTLILTGN-PIQ-SLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-----CTTCCEEECTTC-CCC-EECGGGGTTCT
T ss_pred CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC-----CCCCCEEEccCC-cCC-CCCHHHhcCCC
Confidence 57788888887 66665 46778888888888888775544555555 788888888875 565 4442 466
Q ss_pred CccEEeecccC--ccc-ccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCC
Q 036119 370 LLETLDITSCD--QLL-VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQ 446 (839)
Q Consensus 370 ~L~~L~l~~~~--~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 446 (839)
+|++|++++|. .++ ..++.+++|++|++++|....+.. ......+++|+.|++.+..-
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~-------------------~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL-------------------PEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC-------------------CGGGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC-------------------chhhccchhhhhhcccCccc
Confidence 77777777765 333 347777788888877775322110 11223344555555544321
Q ss_pred cccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC--CCCCCCccEEEeccC--
Q 036119 447 LISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ--AALPSQLRSVVIEEC-- 522 (839)
Q Consensus 447 l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~~~~L~~L~l~~~-- 522 (839)
..+.. .....+..++.....++++.|.+ ..++........+..+.+.++.....+.. ...++.++...+...
T Consensus 186 -~~~~~--~~l~~L~~l~~~~~~~~ls~n~l-~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 186 -QSIYC--TDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp -CEECG--GGGHHHHTCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred -ccccc--ccccchhhhhhhhhhhhcccCcc-cccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 11100 00000111112344566666655 33443344444566666666532221111 112334443333211
Q ss_pred ccccccc---hhhhhCCCCccceEecccCCCCc----CCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEE
Q 036119 523 DALESLP---EAWMQNSNSSLECLAIRSCNSLV----SFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEV 595 (839)
Q Consensus 523 ~~l~~~~---~~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 595 (839)
.....+. .... .....+....+..+.... .........+++.+.+.++... .+.... ...+++.|++
T Consensus 262 ~~~~~l~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~----~~~~L~~L~l 335 (635)
T 4g8a_A 262 RNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDFS----YNFGWQHLEL 335 (635)
T ss_dssp TTSCCCSCCCTTTT-GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGGG----SCCCCSEEEE
T ss_pred cccccccccccccc-ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cccccc----cchhhhhhhc
Confidence 1111110 0000 111222222222211100 0112233345666666555321 121111 1135677777
Q ss_pred eecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeeccccccc--CccccccCCCCCCeEEecCCCCCc
Q 036119 596 SYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLK--SLPADLHNLHHLQKIWIFGCPNLE 673 (839)
Q Consensus 596 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 673 (839)
.+|....... .....|+.+.+.++.... .......++|+.+++++|.+.. ..+.....+.+|+.+++..+...
T Consensus 336 ~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~- 410 (635)
T 4g8a_A 336 VNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI- 410 (635)
T ss_dssp ESCEESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-
T ss_pred ccccccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-
Confidence 6664222111 123456666666654322 2222344667777777766532 33444456667777777766443
Q ss_pred ccCCCCCCCCCcceEeccccccccccc-ccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccC
Q 036119 674 SFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGS 751 (839)
Q Consensus 674 ~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~ 751 (839)
..+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+....+.. ..+++|++|++++|.....+....+
T Consensus 411 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~ 490 (635)
T 4g8a_A 411 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh
Confidence 344455566777777777665554433 34566677777777777665544433 4566777777777765443333345
Q ss_pred CCccccceEEEecCCCCCcCCC----CCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCC---CCc
Q 036119 752 NRFTSLRRFTIWGGCPDLVSPP----PFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQG---LPK 824 (839)
Q Consensus 752 ~~l~~L~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~ 824 (839)
..+++|+.|++++|- +..++ ..+++|++|++++|...+..|..+..+++|+.|++++| +++.+++.. +++
T Consensus 491 ~~l~~L~~L~Ls~N~--L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 491 TELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPS 567 (635)
T ss_dssp TTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCT
T ss_pred hhccccCEEECCCCc--cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhC
Confidence 666777777776642 22221 13467888888888766656666778888888888887 666666543 356
Q ss_pred ccceeeecCCC
Q 036119 825 SLLQLHIYACP 835 (839)
Q Consensus 825 sL~~L~i~~c~ 835 (839)
+|++|+++++|
T Consensus 568 ~L~~L~L~~Np 578 (635)
T 4g8a_A 568 SLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTCC
T ss_pred cCCEEEeeCCC
Confidence 78888888776
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=281.34 Aligned_cols=206 Identities=15% Similarity=0.245 Sum_probs=159.7
Q ss_pred hhhhcCCC-cEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhC-CCCeEeCCCCCcccccCcC----
Q 036119 2 LKKQLFGK-KFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMG-ADPVYQLKELSDDDCLDFT---- 75 (839)
Q Consensus 2 l~~~l~~k-~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~-~~~~~~~~~l~~~~~~~~~---- 75 (839)
+++.|++| |+||||||||+.++..|... +|||||||||++.|+..++ ....|+|++|+++|||++|
T Consensus 235 l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 235 ICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp HHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred HHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHh
Confidence 56788896 99999999998644345432 7999999999999999886 4468999999999999322
Q ss_pred -C---CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCCCCCcchhc---------hhhhhh-
Q 036119 76 -R---HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRDSDILPALR---------LKQCFA- 141 (839)
Q Consensus 76 -~---~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~---------~k~~f~- 141 (839)
. .+.+.+++.+|+++|+|+||||+++|+.|+.+ .+ +|...+....+.....++.+.++ +|.||.
T Consensus 307 ~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~ 384 (549)
T 2a5y_B 307 MPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 384 (549)
T ss_dssp CCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred cCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhc
Confidence 1 25788899999999999999999999999876 43 33344443333323344555554 889999
Q ss_pred ----------hhccCCCCcccChhHHHHHHHHc--CCCcccCCCCCHHHHHHHHHHHHHhccccccccC-CCcceeecHH
Q 036119 142 ----------YSSLFPKDYEFQDEEIILLWTAE--GFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSY-DASRFVMHDL 208 (839)
Q Consensus 142 ----------~~a~f~~~~~~~~~~li~~w~~~--g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdl 208 (839)
|||+||+++.|+ +++|+|+ ||+.....+..+++.++ ++++|++++|++.... ...+|+|||+
T Consensus 385 Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdl 459 (549)
T 2a5y_B 385 LSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHI 459 (549)
T ss_dssp SCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHH
T ss_pred cchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChH
Confidence 999999999988 8999999 99986544667888888 9999999999998753 3567999999
Q ss_pred HHHHHHHHccCceE
Q 036119 209 INDLARWAAGEICF 222 (839)
Q Consensus 209 v~~la~~i~~~e~~ 222 (839)
||++|++++++++.
T Consensus 460 v~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 460 IHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHTTSCTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=262.75 Aligned_cols=265 Identities=13% Similarity=0.021 Sum_probs=126.1
Q ss_pred CCceEEEeccCCCCCccccc-cCCCCCccEEeecCCCCCcccCCCC---CCCCccEEEeccCccccccchhhh------h
Q 036119 465 CRLQFLELSCCEGLTRLPQA-LLTLSSLTEMRIHDCASLVSFPQAA---LPSQLRSVVIEECDALESLPEAWM------Q 534 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~l~~~~---~~~~L~~L~l~~~~~l~~~~~~~~------~ 534 (839)
++|+.|++++|.+....|.. +.++++|++|++++|......+... ..++|+.|.+++|......+..+. .
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 47888888888876555654 7788888888888875544333211 125667777766653322111100 0
Q ss_pred CCCCccceEecccCCCCcCCCC----CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCc
Q 036119 535 NSNSSLECLAIRSCNSLVSFPE----VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNL 610 (839)
Q Consensus 535 ~~~~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 610 (839)
..+++|+.|++++|......+. ....++|+.|+++++........ .. .+. ........+..
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~----~~~--------~~~~~~~~~~~ 273 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---HT----NFK--------DPDNFTFKGLE 273 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT---CC----SSC--------CCCTTTTGGGT
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc---hh----hhc--------cCccccccccc
Confidence 1224555555555543322221 01123445555444432211100 00 000 00000000111
Q ss_pred ccccceeEeccCCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 611 PQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
.++|+.|++++|......+..+. .++|+.|++++|.+.+..|..+..+++|++|++++|...+..|..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 13455555555544433333322 25555555555555554455555555555555555554443444445555555555
Q ss_pred cccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
+++|...+..|..+..+++|++|++++|.+....+.. ..+++|++|++++|++.+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 5555544444555555555555555555554322222 344555555555555543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=259.74 Aligned_cols=392 Identities=23% Similarity=0.286 Sum_probs=241.3
Q ss_pred ccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcC-------------cEeEecCc
Q 036119 262 VEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHL-------------RCLNLSRT 328 (839)
Q Consensus 262 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L-------------~~L~L~~~ 328 (839)
.++||.+ .+..+.+ ..+|..++++++|++|++++|.+.+.+|.+++++.+| ++|++++|
T Consensus 10 ~~~L~~L------~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 10 NTFLQEP------LRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccchhh------hcccCch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 4566766 3444444 3456668999999999999998667899999988875 88999998
Q ss_pred cccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccEEeecccCcccccCCCC-CCccEEEeccccceeecC
Q 036119 329 KWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCL-PALSELQIDGCKRVVFSS 407 (839)
Q Consensus 329 ~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~l~~~~~l~~~l~~l-~~L~~L~l~~~~~~~~~~ 407 (839)
.+.+ +|.. .++|++|++++| .++ .+|..+.+|++|+++++.- ..+..+ ++|++|++++|....+
T Consensus 82 ~l~~-lp~~--------~~~L~~L~l~~n-~l~-~lp~~~~~L~~L~l~~n~l--~~l~~~~~~L~~L~L~~n~l~~l-- 146 (454)
T 1jl5_A 82 GLSS-LPEL--------PPHLESLVASCN-SLT-ELPELPQSLKSLLVDNNNL--KALSDLPPLLEYLGVSNNQLEKL-- 146 (454)
T ss_dssp CCSC-CCSC--------CTTCSEEECCSS-CCS-SCCCCCTTCCEEECCSSCC--SCCCSCCTTCCEEECCSSCCSSC--
T ss_pred cccc-CCCC--------cCCCCEEEccCC-cCC-ccccccCCCcEEECCCCcc--CcccCCCCCCCEEECcCCCCCCC--
Confidence 8744 4541 568899999885 677 4887778899999888751 112223 6888999888763321
Q ss_pred CCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCC
Q 036119 408 PHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLT 487 (839)
Q Consensus 408 ~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~ 487 (839)
+ ....+++|+.|+++++. + ..+|..+++|+.|++++|.+. .+| .++.
T Consensus 147 ------------------p--~~~~l~~L~~L~l~~N~-l----------~~lp~~~~~L~~L~L~~n~l~-~l~-~~~~ 193 (454)
T 1jl5_A 147 ------------------P--ELQNSSFLKIIDVDNNS-L----------KKLPDLPPSLEFIAAGNNQLE-ELP-ELQN 193 (454)
T ss_dssp ------------------C--CCTTCTTCCEEECCSSC-C----------SCCCCCCTTCCEEECCSSCCS-SCC-CCTT
T ss_pred ------------------c--ccCCCCCCCEEECCCCc-C----------cccCCCcccccEEECcCCcCC-cCc-cccC
Confidence 1 13566778888887653 1 223444468999999999884 466 5899
Q ss_pred CCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEE
Q 036119 488 LSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTII 567 (839)
Q Consensus 488 l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 567 (839)
+++|+.|++++|.. ..+|. .+++|+.|++++|. +..+|. + ..+++|+.|++++|... .+|. .+++|+.|+
T Consensus 194 l~~L~~L~l~~N~l-~~l~~--~~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~ 263 (454)
T 1jl5_A 194 LPFLTAIYADNNSL-KKLPD--LPLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYADNNLLK-TLPD--LPPSLEALN 263 (454)
T ss_dssp CTTCCEEECCSSCC-SSCCC--CCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSSCCS-SCCS--CCTTCCEEE
T ss_pred CCCCCEEECCCCcC-CcCCC--CcCcccEEECcCCc-CCcccc-c--CCCCCCCEEECCCCcCC-cccc--cccccCEEE
Confidence 99999999999854 34544 34799999999986 446664 3 57789999999987544 4553 357899999
Q ss_pred EcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeeccccc
Q 036119 568 IGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLEN 647 (839)
Q Consensus 568 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 647 (839)
+++|. +..+|.. +++|+.|++++|.. +.++ ..+++|+.|++++|.... ++. ..++|+.|++++|++
T Consensus 264 l~~N~-l~~l~~~------~~~L~~L~ls~N~l-~~l~---~~~~~L~~L~l~~N~l~~-i~~--~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 264 VRDNY-LTDLPEL------PQSLTFLDVSENIF-SGLS---ELPPNLYYLNASSNEIRS-LCD--LPPSLEELNVSNNKL 329 (454)
T ss_dssp CCSSC-CSCCCCC------CTTCCEEECCSSCC-SEES---CCCTTCCEEECCSSCCSE-ECC--CCTTCCEEECCSSCC
T ss_pred CCCCc-ccccCcc------cCcCCEEECcCCcc-Cccc---CcCCcCCEEECcCCcCCc-ccC--CcCcCCEEECCCCcc
Confidence 99885 4555542 25899999998853 3332 245789999999885432 221 125899999999888
Q ss_pred ccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccc--cccccCccc-------------cccccc
Q 036119 648 LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK--ALPNCMHNL-------------TSLLNL 712 (839)
Q Consensus 648 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l-------------~~L~~L 712 (839)
.+ +|.. +++|++|++++|... .+|. .+++|++|++++|+..+ .+|.++..+ ++|+.|
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L 401 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------
T ss_pred cc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEE
Confidence 65 5543 688999999998655 5666 35789999999998777 677777665 455555
Q ss_pred ccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 713 KISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
++++|++.. +|. .+++++.|.+++|.+.+
T Consensus 402 ~ls~N~l~~-~~~--iP~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 402 HVETNPLRE-FPD--IPESVEDLRMNSERVVD 430 (454)
T ss_dssp --------------------------------
T ss_pred ECCCCcCCc-ccc--chhhHhheeCcCcccCC
Confidence 555555432 111 23345555555554443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=270.25 Aligned_cols=439 Identities=15% Similarity=0.089 Sum_probs=220.5
Q ss_pred HHHHhcCCCceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTL 364 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~l 364 (839)
++..|.++++|++|+|++|. +..+| .+|.+|++|++|+|++|++.+..|..+.. +++|++|++++| .++ .+
T Consensus 68 ~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~-----L~~L~~L~Ls~N-~l~-~l 139 (635)
T 4g8a_A 68 GSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-----LSSLQKLVAVET-NLA-SL 139 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT-----CTTCCEEECTTS-CCC-CS
T ss_pred CHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC-----CCCCCEEECCCC-cCC-CC
Confidence 34567778888888888887 66665 45777888888888888775543344444 778888888875 555 34
Q ss_pred C----cCCCCccEEeecccC----cccccCCCCCCccEEEeccccceeecCCC--cc-------ceeeeccccccccccc
Q 036119 365 P----RRLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPH--LV-------HAVNVREQAYFWRSET 427 (839)
Q Consensus 365 p----~~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l-------~~l~l~~l~~~~~~~~ 427 (839)
| ..+++|++|+++++. .++..++.+++|++|++++|....+.... .+ ..+++..-. +.....
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~ 218 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQP 218 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECT
T ss_pred ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc-ccccCc
Confidence 4 246677888887765 34566777888888888877654432110 00 001110000 000000
Q ss_pred c------------------------cCCCCCCCCceecc--cCCCcccccccccccCCCCCCcCCceEEEeccCCCC---
Q 036119 428 R------------------------LPQDIRSLNWLQIS--RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGL--- 478 (839)
Q Consensus 428 ~------------------------~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~--- 478 (839)
. ....+..++...+. .......+.. .....+... ..+....+..+...
T Consensus 219 ~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~--~~~~~~~~~-~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 219 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK--FDKSALEGL-CNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC--CCTTTTGGG-GGSEEEEEEEECCCSCE
T ss_pred ccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc--ccccccccc-cchhhhhhhhhhhcccc
Confidence 0 00111111111110 0000000000 000000000 22333333222111
Q ss_pred CccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCCCC
Q 036119 479 TRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVA 558 (839)
Q Consensus 479 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 558 (839)
...+..+..+.+++.+.+.++.. ..++......+|+.|.+.+|......+ ..++.|+.+.+..+... ..+...
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~L~~l~l~~n~~~-~~~~~~ 368 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPT-----LKLKSLKRLTFTSNKGG-NAFSEV 368 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEE-EECGGGGSCCCCSEEEEESCEESSCCC-----CBCTTCCEEEEESCCSC-CBCCCC
T ss_pred cchhhhhhhhccccccccccccc-ccccccccchhhhhhhcccccccCcCc-----ccchhhhhcccccccCC-CCcccc
Confidence 12222344455666666666532 222333345667777776664322211 23456666666665433 223334
Q ss_pred CCCCccEEEEcCCCCCc--CCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhh--hcCC
Q 036119 559 LPSQLRTIIIGGCHALE--SLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAE--RLDN 634 (839)
Q Consensus 559 ~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~ 634 (839)
.+++|+.++++++.... ..+...... .+++.+++..+........ ....++|+.+++..+......+. ....
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~---~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGT---ISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSC---SCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred cccccccchhhccccccccccccchhhh---hhhhhhhcccccccccccc-ccccccccchhhhhccccccccccccccc
Confidence 45677777776654321 122222111 3566666655543322222 22334566666665544333321 1223
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCc-ccCCCCCCCCCcceEecccccccccccccCcccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLE-SFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 713 (839)
++++.++++.|.+....+..+..+++|+.|++++|.... ..|..+..+++|++|++++|+..+..|..|.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 566666666666666556556666666666666665433 2445556666666666666655555556666666666666
Q ss_pred cccccCCccCCCC-CCCCCcceEEecCCCCCCccc
Q 036119 714 ISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 714 l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 747 (839)
|++|.+....+.. ..+++|++|++++|++.+..+
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 6666655433322 445666666666666665443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=254.84 Aligned_cols=360 Identities=15% Similarity=0.094 Sum_probs=235.7
Q ss_pred CceeEEEeCCCcccccc-cccccCcCcCcEeEecCcccccccc-CCCCCCccccCCCccEEeccCccccccCCCc---CC
Q 036119 294 PRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIP-CGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RL 368 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p-~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l 368 (839)
++|++|+|++|. +..+ |..|+++++|++|++++|.+.+.+| ..+.. +++|++|++++| .+.+..|. .+
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-----LSSLIILKLDYN-QFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT-----CTTCCEEECTTC-TTCEECTTTTTTC
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccc-----cccCCEEeCCCC-ccCccChhhccCc
Confidence 567777777777 4444 6677777778888887777654443 33444 777777777775 44433343 45
Q ss_pred CCccEEeecccCc---cccc--CCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceeccc
Q 036119 369 LLLETLDITSCDQ---LLVT--IQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISR 443 (839)
Q Consensus 369 ~~L~~L~l~~~~~---l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~ 443 (839)
.+|++|++++|.- .+.. ++.+++|++|++++|....... ..+...+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~~l---------- 153 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-------------------ASFFLNM---------- 153 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-------------------CGGGGGC----------
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-------------------ccccCCC----------
Confidence 5666677666652 2333 6777777777777765322100 0001111
Q ss_pred CCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCC--CCccEEeecCCCCCcccCC----------CCCC
Q 036119 444 CPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTL--SSLTEMRIHDCASLVSFPQ----------AALP 511 (839)
Q Consensus 444 ~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~l~~----------~~~~ 511 (839)
++|+.|++++|.+....+..+..+ ++|+.|++++|.... ++. ...+
T Consensus 154 ---------------------~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 154 ---------------------RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp ---------------------TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTT
T ss_pred ---------------------CcccEEeCCCCcccccChhhhhccccccccccccccCcccc-cchhhcccccccccccc
Confidence 467777777777655555555544 567777777764332 221 1234
Q ss_pred CCccEEEeccCccccccchhhhh-CCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCc
Q 036119 512 SQLRSVVIEECDALESLPEAWMQ-NSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATL 590 (839)
Q Consensus 512 ~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 590 (839)
++|+.|++++|......+..+.. ...++|+.|++++|............+ ......+.....++|
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK--------------DPDNFTFKGLEASGV 277 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC--------------CCCTTTTGGGTTSCC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc--------------cCcccccccccccCc
Confidence 77888888888765555544322 224788899988876544322111111 111111111112467
Q ss_pred ceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCC
Q 036119 591 EHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGC 669 (839)
Q Consensus 591 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 669 (839)
+.|++++|......+.....+++|+.|++++|......+..+ ..++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 777777776555544444455789999999987665555444 3489999999999998887888999999999999999
Q ss_pred CCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCC
Q 036119 670 PNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE 725 (839)
Q Consensus 670 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 725 (839)
.+....|..+..+++|++|++++|+..+..+..+..+++|+.|++++|++....|.
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 88877788889999999999999976654455678999999999999999876553
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=244.80 Aligned_cols=100 Identities=20% Similarity=0.174 Sum_probs=70.8
Q ss_pred hcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC-cCC
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP-RRL 368 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~l 368 (839)
+..+++|++|++++|. +..+| +++.+++|++|++++|.+.+ +| ++. +++|++|++++| .+++ +| ..+
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~-----l~~L~~L~Ls~N-~l~~-~~~~~l 105 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQ-----NTNLTYLACDSN-KLTN-LDVTPL 105 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTT-----CTTCSEEECCSS-CCSC-CCCTTC
T ss_pred hhHcCCCCEEEccCCC-cccCh-hhcccCCCCEEEccCCcCCe-Ec--ccc-----CCCCCEEECcCC-CCce-eecCCC
Confidence 4567888999999888 77777 68888999999999998855 33 444 888999999886 5653 33 356
Q ss_pred CCccEEeecccCcccccCCCCCCccEEEecccc
Q 036119 369 LLLETLDITSCDQLLVTIQCLPALSELQIDGCK 401 (839)
Q Consensus 369 ~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~ 401 (839)
++|++|++++|.--...++.+++|++|++++|.
T Consensus 106 ~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNT 138 (457)
T ss_dssp TTCCEEECCSSCCSCCCCTTCTTCCEEECTTSC
T ss_pred CcCCEEECCCCcCCeecCCCCCcCCEEECCCCc
Confidence 667777776665111126667777777776664
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=246.61 Aligned_cols=325 Identities=18% Similarity=0.168 Sum_probs=180.4
Q ss_pred CCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCcc
Q 036119 293 LPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLE 372 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~ 372 (839)
+.+++.|+++++. +..+|. +..+++|++|++++|.+.+..| +.. +++|++|++++| .+. .+
T Consensus 45 l~~l~~L~l~~~~-i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~-----l~~L~~L~l~~n-~l~-~~-------- 105 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLTDITP--LKN-----LTKLVDILMNNN-QIA-DI-------- 105 (466)
T ss_dssp HHTCCEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSS-CCC-CC--------
T ss_pred hccccEEecCCCC-CccCcc-hhhhcCCCEEECCCCccCCchh--hhc-----cccCCEEECCCC-ccc-cC--------
Confidence 4578888898888 778874 7888899999999988855433 444 888888888886 443 11
Q ss_pred EEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccc
Q 036119 373 TLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVT 452 (839)
Q Consensus 373 ~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 452 (839)
+. ++.+++|++|++++|....++ . +..
T Consensus 106 ----------~~-~~~l~~L~~L~L~~n~l~~~~----------------------------~-----~~~--------- 132 (466)
T 1o6v_A 106 ----------TP-LANLTNLTGLTLFNNQITDID----------------------------P-----LKN--------- 132 (466)
T ss_dssp ----------GG-GTTCTTCCEEECCSSCCCCCG----------------------------G-----GTT---------
T ss_pred ----------hh-hcCCCCCCEEECCCCCCCCCh----------------------------H-----HcC---------
Confidence 12 566677777777666422100 0 000
Q ss_pred cccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhh
Q 036119 453 VEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAW 532 (839)
Q Consensus 453 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~ 532 (839)
+ ++|+.|++++|.+ ..++ .+..+++|+.|++.++ ...++....+++|+.|++++|. +..++. +
T Consensus 133 ----------l-~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l 195 (466)
T 1o6v_A 133 ----------L-TNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNK-VSDISV-L 195 (466)
T ss_dssp ----------C-TTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred ----------C-CCCCEEECCCCcc-CCCh-hhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCc-CCCChh-h
Confidence 0 4677777777765 3344 3778888888888642 3333345556777777777765 333322 1
Q ss_pred hhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCccc
Q 036119 533 MQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQ 612 (839)
Q Consensus 533 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 612 (839)
..+++|+.|++++|...... ....+++|+.|++++|. +..+ +. ...++
T Consensus 196 --~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~---------------------------~~-l~~l~ 243 (466)
T 1o6v_A 196 --AKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDI---------------------------GT-LASLT 243 (466)
T ss_dssp --GGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCC---------------------------GG-GGGCT
T ss_pred --ccCCCCCEEEecCCcccccc-cccccCCCCEEECCCCC-cccc---------------------------hh-hhcCC
Confidence 34456666666655433221 13334444444444442 1111 11 11124
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+|+.|++++|..... +.....++|+.|++++|.+.+..+ +..+++|+.|++++|...+..+ +..+++|+.|++++
T Consensus 244 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 244 NLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp TCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred CCCEEECCCCccccc-hhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 566666666543222 223334566666666665544332 4556666666666665443222 44555666666666
Q ss_pred ccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCcc
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 746 (839)
|+..+..| +..+++|+.|++++|++.. ++....+++|++|++++|++.+..
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCBCG
T ss_pred CcCCCchh--hccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCccCccc
Confidence 65444333 4556666666666665443 233345556666666666555433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=234.78 Aligned_cols=355 Identities=14% Similarity=0.101 Sum_probs=205.4
Q ss_pred ccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCC
Q 036119 258 SICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCG 337 (839)
Q Consensus 258 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~ 337 (839)
.+.++++|++| .+..+.+.. .+ .+..+++|++|++++|. +..+| ++.+++|++|++++|.+.+ +|
T Consensus 37 ~~~~l~~L~~L------~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-- 101 (457)
T 3bz5_A 37 SEEQLATLTSL------DCHNSSITD--MT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLTN-LD-- 101 (457)
T ss_dssp EHHHHTTCCEE------ECCSSCCCC--CT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred ChhHcCCCCEE------EccCCCccc--Ch-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCce-ee--
Confidence 45567777777 333333321 12 47889999999999999 77786 8899999999999999865 33
Q ss_pred CCCCccccCCCccEEeccCccccccCCC-cCCCCccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeee
Q 036119 338 AGQEVDEVFPKLRTLSLDNCCKLQGTLP-RRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNV 416 (839)
Q Consensus 338 ~~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l 416 (839)
++. +++|++|++++| .++ .+| ..+++|++|++++|.--...++.+++|++|++++|.....
T Consensus 102 ~~~-----l~~L~~L~L~~N-~l~-~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~----------- 163 (457)
T 3bz5_A 102 VTP-----LTKLTYLNCDTN-KLT-KLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITK----------- 163 (457)
T ss_dssp CTT-----CTTCCEEECCSS-CCS-CCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCC-----------
T ss_pred cCC-----CCcCCEEECCCC-cCC-eecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccc-----------
Confidence 455 999999999996 676 355 5788999999998872223488899999999988853210
Q ss_pred cccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEee
Q 036119 417 REQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRI 496 (839)
Q Consensus 417 ~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 496 (839)
. -...+ ++|+.|++++|.+. .+| ++.+++|+.|++
T Consensus 164 --------~---~~~~l-------------------------------~~L~~L~ls~n~l~-~l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 164 --------L---DVTPQ-------------------------------TQLTTLDCSFNKIT-ELD--VSQNKLLNRLNC 198 (457)
T ss_dssp --------C---CCTTC-------------------------------TTCCEEECCSSCCC-CCC--CTTCTTCCEEEC
T ss_pred --------c---ccccC-------------------------------CcCCEEECCCCccc-eec--cccCCCCCEEEC
Confidence 0 01122 35555555555552 233 555566666666
Q ss_pred cCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcC
Q 036119 497 HDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALES 576 (839)
Q Consensus 497 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~ 576 (839)
++|... .+ ....+++|+.|++++|... .+| + ..+++|+.|++++|.... ++ ...+++|+.|+++++
T Consensus 199 ~~N~l~-~~-~l~~l~~L~~L~Ls~N~l~-~ip--~--~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n----- 264 (457)
T 3bz5_A 199 DTNNIT-KL-DLNQNIQLTFLDCSSNKLT-EID--V--TPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQT----- 264 (457)
T ss_dssp CSSCCS-CC-CCTTCTTCSEEECCSSCCS-CCC--C--TTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTC-----
T ss_pred cCCcCC-ee-ccccCCCCCEEECcCCccc-ccC--c--cccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCC-----
Confidence 655322 22 2344556666666655422 233 1 344566666666554322 22 233445555554432
Q ss_pred CchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCcccccc
Q 036119 577 LPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLH 656 (839)
Q Consensus 577 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 656 (839)
+|+.+++++|.....++. + .+++|+.|++++|..++.++. ...+|+.|+++
T Consensus 265 ------------~L~~L~l~~n~~~~~~~~-~-~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~------------- 315 (457)
T 3bz5_A 265 ------------DLLEIDLTHNTQLIYFQA-E-GCRKIKELDVTHNTQLYLLDC--QAAGITELDLS------------- 315 (457)
T ss_dssp ------------CCSCCCCTTCTTCCEEEC-T-TCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCT-------------
T ss_pred ------------CCCEEECCCCccCCcccc-c-ccccCCEEECCCCcccceecc--CCCcceEechh-------------
Confidence 344444444444444332 1 224566666666655554442 22334444333
Q ss_pred CCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEE
Q 036119 657 NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLD 736 (839)
Q Consensus 657 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 736 (839)
++++|++|++++|...+ ++ +..+++|+.|++++|+..+ ++.|..|.+++|.+... ..+.+|+.++
T Consensus 316 ~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~ 380 (457)
T 3bz5_A 316 QNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKET 380 (457)
T ss_dssp TCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBC
T ss_pred hcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccc
Confidence 23556666666665544 22 4556666666666664332 24455555555544332 1334556666
Q ss_pred ecCCCCCCcccc
Q 036119 737 VHDLKISKPLLE 748 (839)
Q Consensus 737 l~~~~~~~~~~~ 748 (839)
+++|+++|.+|.
T Consensus 381 l~~N~l~g~ip~ 392 (457)
T 3bz5_A 381 LTNNSLTIAVSP 392 (457)
T ss_dssp CBTTBEEEECCT
T ss_pred cccCcEEEEcCh
Confidence 666666655544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=232.30 Aligned_cols=347 Identities=19% Similarity=0.131 Sum_probs=253.7
Q ss_pred CCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCC
Q 036119 432 DIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALP 511 (839)
Q Consensus 432 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~ 511 (839)
.+++++.|++.++.- ..+. .+..+ ++|+.|++++|.+ ..++. +..+++|++|++++|... .++....+
T Consensus 44 ~l~~l~~L~l~~~~i-~~l~-------~~~~l-~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI-KSID-------GVEYL-NNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQIA-DITPLANL 111 (466)
T ss_dssp HHHTCCEEECCSSCC-CCCT-------TGGGC-TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTC
T ss_pred HhccccEEecCCCCC-ccCc-------chhhh-cCCCEEECCCCcc-CCchh-hhccccCCEEECCCCccc-cChhhcCC
Confidence 356788888876532 1111 11122 6899999999987 45555 899999999999998544 44446778
Q ss_pred CCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcc
Q 036119 512 SQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLE 591 (839)
Q Consensus 512 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 591 (839)
++|+.|++++|. +..++. + ..+++|++|++++|.. ..++.+..+++|+.|.++++ +..++. +.. + ++|+
T Consensus 112 ~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~--~~~~~~--~~~-l-~~L~ 180 (466)
T 1o6v_A 112 TNLTGLTLFNNQ-ITDIDP-L--KNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQ--VTDLKP--LAN-L-TTLE 180 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-G--TTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEES--CCCCGG--GTT-C-TTCC
T ss_pred CCCCEEECCCCC-CCCChH-H--cCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCc--ccCchh--hcc-C-CCCC
Confidence 999999999986 444443 2 6789999999999864 44566777889999999743 333332 221 2 5899
Q ss_pred eEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCC
Q 036119 592 HLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPN 671 (839)
Q Consensus 592 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 671 (839)
.|++++|.. ..++. ...+++|+.|++++|......+ ....++|+.|++++|.+.+. ..+..+++|++|++++|..
T Consensus 181 ~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 181 RLDISSNKV-SDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp EEECCSSCC-CCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EEECcCCcC-CCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc
Confidence 999998863 33333 2334689999999986544333 44568999999999987653 3577899999999999977
Q ss_pred CcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccC
Q 036119 672 LESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGS 751 (839)
Q Consensus 672 ~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 751 (839)
....+ +..+++|++|++++|...+ ++. +..+++|+.|++++|.+.. ++....+++|++|++++|++.+..+ .
T Consensus 256 ~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~ 327 (466)
T 1o6v_A 256 SNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP---V 327 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCGG---G
T ss_pred ccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCcCCCchh---h
Confidence 65444 6778899999999987554 444 7889999999999998765 3335678899999999999887654 4
Q ss_pred CCccccceEEEecCCCCCcCCCC--CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 752 NRFTSLRRFTIWGGCPDLVSPPP--FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 752 ~~l~~L~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
..+++|+.|++++|. +..++. .+++|+.|++++|+..+..| +..+++|+.|++++| .++.+|.
T Consensus 328 ~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNK--VSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp GGCTTCCEEECCSSC--CCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE-EEECCCB
T ss_pred ccCccCCEeECCCCc--cCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC-cccCCch
Confidence 678999999998853 223322 45789999999998776666 778999999999988 5566554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=223.39 Aligned_cols=306 Identities=18% Similarity=0.180 Sum_probs=177.8
Q ss_pred cCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCC
Q 036119 291 NHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLL 370 (839)
Q Consensus 291 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~ 370 (839)
..+++|++|+++++. +..+|. +..+++|++|++++|.+.+ +|. +.. +++|++|++++| .++ .+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~-----l~~L~~L~L~~n-~i~-~~------ 103 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQITD-ISP-LSN-----LVKLTNLYIGTN-KIT-DI------ 103 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTT-----CTTCCEEECCSS-CCC-CC------
T ss_pred hhcccccEEEEeCCc-cccchh-hhhcCCccEEEccCCcccc-chh-hhc-----CCcCCEEEccCC-ccc-Cc------
Confidence 356789999999998 888875 8889999999999998854 333 444 888999988886 444 22
Q ss_pred ccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccc
Q 036119 371 LETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450 (839)
Q Consensus 371 L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 450 (839)
..+..+++|++|++++|....++ . +.
T Consensus 104 -------------~~~~~l~~L~~L~l~~n~i~~~~----------------------------~-----~~-------- 129 (347)
T 4fmz_A 104 -------------SALQNLTNLRELYLNEDNISDIS----------------------------P-----LA-------- 129 (347)
T ss_dssp -------------GGGTTCTTCSEEECTTSCCCCCG----------------------------G-----GT--------
T ss_pred -------------hHHcCCCcCCEEECcCCcccCch----------------------------h-----hc--------
Confidence 23566677777777766422100 0 00
Q ss_pred cccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccch
Q 036119 451 VTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 451 ~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
.+ ++|+.|++++|.....++. +..+++|+.|++++|.. ..++....+++|+.|++++|.. ..++.
T Consensus 130 -----------~l-~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~ 194 (347)
T 4fmz_A 130 -----------NL-TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLNYNQI-EDISP 194 (347)
T ss_dssp -----------TC-TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECTTSCC-CCCGG
T ss_pred -----------cC-CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchhhccCCCCCEEEccCCcc-ccccc
Confidence 00 3677777777755444443 67777777777777643 2222233455555555555532 22221
Q ss_pred hhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCc
Q 036119 531 AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNL 610 (839)
Q Consensus 531 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 610 (839)
+ ..+++|+.+++++|.... ++.+..+
T Consensus 195 -~--~~l~~L~~L~l~~n~l~~-~~~~~~~-------------------------------------------------- 220 (347)
T 4fmz_A 195 -L--ASLTSLHYFTAYVNQITD-ITPVANM-------------------------------------------------- 220 (347)
T ss_dssp -G--GGCTTCCEEECCSSCCCC-CGGGGGC--------------------------------------------------
T ss_pred -c--cCCCccceeecccCCCCC-CchhhcC--------------------------------------------------
Confidence 1 223444444444432211 1111222
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
++|+.|++++|.... ++.....++|++|++++|.+.+. ..+..+++|++|++++|...+ ++ .+..+++|+.|++
T Consensus 221 -~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 -TRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFL 294 (347)
T ss_dssp -TTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEEC
T ss_pred -CcCCEEEccCCccCC-CcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEEC
Confidence 233344443332211 11122234555555555554432 246677788888888775543 33 3556678888888
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
++|+..+..|..+..+++|++|++++|++....| ...+++|++|++++|++.
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 8887666666777778888888888887665444 556777888888887654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=225.97 Aligned_cols=310 Identities=16% Similarity=0.158 Sum_probs=206.2
Q ss_pred CCCceeEEEeCCCccccccccc-ccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCC
Q 036119 292 HLPRLRVFSLCGYRNIFNLPNE-IGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLL 370 (839)
Q Consensus 292 ~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~ 370 (839)
.+.++++|+++++. ++.+|.. +..+++|++|++++|.+.+..|..+.. +++|++|++++| .+.+ +|
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n-~l~~-~~----- 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-----AHTIQKLYMGFN-AIRY-LP----- 109 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCCC-CC-----
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccC-----CCCcCEEECCCC-CCCc-CC-----
Confidence 35788999999988 8888865 578899999999999886655556666 889999999886 4542 22
Q ss_pred ccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccc
Q 036119 371 LETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450 (839)
Q Consensus 371 L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 450 (839)
+..++.+++|++|++++|....++. .
T Consensus 110 ------------~~~~~~l~~L~~L~L~~n~l~~l~~------------------------~------------------ 135 (390)
T 3o6n_A 110 ------------PHVFQNVPLLTVLVLERNDLSSLPR------------------------G------------------ 135 (390)
T ss_dssp ------------TTTTTTCTTCCEEECCSSCCCCCCT------------------------T------------------
T ss_pred ------------HHHhcCCCCCCEEECCCCccCcCCH------------------------H------------------
Confidence 2345666777777777664221100 0
Q ss_pred cccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccch
Q 036119 451 VTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 451 ~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
.+..+ ++|+.|++++|.+....+..++.+++|+.|++++|... .++ ...+++|+.|.+++|.. ..+
T Consensus 136 --------~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~l~~L~~L~l~~n~l-~~~-- 201 (390)
T 3o6n_A 136 --------IFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL-STL-- 201 (390)
T ss_dssp --------TTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC-GGGCTTCSEEECCSSCC-SEE--
T ss_pred --------HhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc-cccccccceeecccccc-ccc--
Confidence 00111 46777788777775555666778888888888877432 221 22344455555444421 111
Q ss_pred hhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCc
Q 036119 531 AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNL 610 (839)
Q Consensus 531 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 610 (839)
..+++|+.|+++++. +..++ ...
T Consensus 202 ---------------------------~~~~~L~~L~l~~n~-l~~~~-----------------------------~~~ 224 (390)
T 3o6n_A 202 ---------------------------AIPIAVEELDASHNS-INVVR-----------------------------GPV 224 (390)
T ss_dssp ---------------------------ECCSSCSEEECCSSC-CCEEE-----------------------------CCC
T ss_pred ---------------------------CCCCcceEEECCCCe-eeecc-----------------------------ccc
Confidence 122244444444442 11111 111
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+++|+.|++++|.... .+.....++|+.|++++|.+.+..|..+..+++|++|++++|... .+|.....+++|++|++
T Consensus 225 ~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 225 NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEEC
T ss_pred cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEEC
Confidence 2456666666654322 233334578888888888888777888899999999999999665 46666677899999999
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
++|+ +..+|..+..+++|+.|++++|++.. ++ ...+++|+.|++++|++..
T Consensus 303 ~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 303 SHNH-LLHVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSSC-CCCCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEH
T ss_pred CCCc-ceecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccc
Confidence 9996 45688888899999999999999864 33 4578899999999998874
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-23 Score=227.05 Aligned_cols=318 Identities=17% Similarity=0.121 Sum_probs=170.1
Q ss_pred eEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccEEee
Q 036119 297 RVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDI 376 (839)
Q Consensus 297 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~l 376 (839)
+.++.+++. +..+|..+. .+|++|++++|.+.+..|..+.. +++|++|++++| .+.+..
T Consensus 14 ~~v~c~~~~-l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~i~~~~------------ 72 (477)
T 2id5_A 14 RAVLCHRKR-FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFAS-----FPHLEELELNEN-IVSAVE------------ 72 (477)
T ss_dssp TEEECCSCC-CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTT-----CTTCCEEECTTS-CCCEEC------------
T ss_pred CEEEeCCCC-cCcCCCCCC--CCCcEEECCCCccceECHhHccC-----CCCCCEEECCCC-ccCEeC------------
Confidence 456666666 677776553 57778888888776655666655 777777777775 444211
Q ss_pred cccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccc
Q 036119 377 TSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEH 456 (839)
Q Consensus 377 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 456 (839)
+..++.+++|++|++++|....++.
T Consensus 73 ------~~~~~~l~~L~~L~L~~n~l~~~~~------------------------------------------------- 97 (477)
T 2id5_A 73 ------PGAFNNLFNLRTLGLRSNRLKLIPL------------------------------------------------- 97 (477)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCCSCCT-------------------------------------------------
T ss_pred ------hhhhhCCccCCEEECCCCcCCccCc-------------------------------------------------
Confidence 2345566667777776654221100
Q ss_pred cCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccC-CCCCCCCccEEEeccCccccccchhhhhC
Q 036119 457 DQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFP-QAALPSQLRSVVIEECDALESLPEAWMQN 535 (839)
Q Consensus 457 ~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 535 (839)
..+..+ ++|+.|++++|.+....+..+..+++|+.|++++|......+ ....+++|+.|++++|.. ..++.... .
T Consensus 98 -~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l-~ 173 (477)
T 2id5_A 98 -GVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEAL-S 173 (477)
T ss_dssp -TSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHH-T
T ss_pred -ccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHh-c
Confidence 000111 477888888888766667778889999999998875443322 233467777777777643 33332211 3
Q ss_pred CCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccc
Q 036119 536 SNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLK 615 (839)
Q Consensus 536 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 615 (839)
.+++|+.|++++|... .++...+... ++|+.|++++|..+..++.......+|+
T Consensus 174 ~l~~L~~L~l~~n~i~------------------------~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 174 HLHGLIVLRLRHLNIN------------------------AIRDYSFKRL--YRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp TCTTCCEEEEESCCCC------------------------EECTTCSCSC--TTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCcEEeCCCCcCc------------------------EeChhhcccC--cccceeeCCCCccccccCcccccCcccc
Confidence 3455555555554221 1111111111 3566666666655554443222223455
Q ss_pred eeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccc
Q 036119 616 YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN 695 (839)
Q Consensus 616 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 695 (839)
.|++++ |.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|..
T Consensus 228 ~L~l~~-----------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 228 SLSITH-----------------------CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEEEES-----------------------SCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred EEECcC-----------------------CcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 555544 444332223444555555555555554433334444555555555555554
Q ss_pred cccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 696 LKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 696 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
.+..|..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 4444555555555555555555544322211 33455555555555544
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=236.55 Aligned_cols=309 Identities=16% Similarity=0.151 Sum_probs=211.0
Q ss_pred CCceeEEEeCCCccccccccc-ccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCc
Q 036119 293 LPRLRVFSLCGYRNIFNLPNE-IGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLL 371 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L 371 (839)
+.++++|++++|. ++.+|.. +.++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+ +|
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~-~~------ 115 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-----AHTIQKLYMGFN-AIRY-LP------ 115 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCCC-CC------
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-----CCCCCEEECCCC-cCCC-CC------
Confidence 5788999999998 8888865 678899999999999987766667776 999999999986 5553 22
Q ss_pred cEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCccccc
Q 036119 372 ETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLV 451 (839)
Q Consensus 372 ~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 451 (839)
+..++.+++|++|++++|....++. .
T Consensus 116 -----------~~~~~~l~~L~~L~L~~n~l~~l~~------------------------~------------------- 141 (597)
T 3oja_B 116 -----------PHVFQNVPLLTVLVLERNDLSSLPR------------------------G------------------- 141 (597)
T ss_dssp -----------TTTTTTCTTCCEEECCSSCCCCCCT------------------------T-------------------
T ss_pred -----------HHHHcCCCCCCEEEeeCCCCCCCCH------------------------H-------------------
Confidence 2345667777777777765221100 0
Q ss_pred ccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchh
Q 036119 452 TVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEA 531 (839)
Q Consensus 452 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~ 531 (839)
.+..+ ++|+.|++++|.+....|..++.+++|+.|++++|... .++ ...+++|+.|++++|.. ..
T Consensus 142 -------~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~-~~~l~~L~~L~l~~n~l-~~---- 206 (597)
T 3oja_B 142 -------IFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL-ST---- 206 (597)
T ss_dssp -------TTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC-GGGCTTCSEEECCSSCC-SE----
T ss_pred -------HhccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC-hhhhhhhhhhhcccCcc-cc----
Confidence 00111 47778888888776666667788888888888887432 222 22344444444444321 11
Q ss_pred hhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcc
Q 036119 532 WMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLP 611 (839)
Q Consensus 532 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 611 (839)
+..+++|+.|++++|. +..++ +..+
T Consensus 207 -------------------------l~~~~~L~~L~ls~n~-l~~~~-----------------------------~~~~ 231 (597)
T 3oja_B 207 -------------------------LAIPIAVEELDASHNS-INVVR-----------------------------GPVN 231 (597)
T ss_dssp -------------------------EECCTTCSEEECCSSC-CCEEE-----------------------------CSCC
T ss_pred -------------------------ccCCchhheeeccCCc-ccccc-----------------------------cccC
Confidence 1122344444444442 11111 1122
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|.... .+.....++|+.|++++|.+.+..|..+..+++|+.|++++|... .+|..+..+++|+.|+++
T Consensus 232 ~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 232 VELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp SCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECC
Confidence 456666666654332 233344578888889888888888889999999999999999765 467777778999999999
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
+|... .+|..+..+++|+.|++++|++... + ...+++|+.|++++|++.+
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEH
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCC
Confidence 99654 6888889999999999999998643 3 4567899999999999874
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=219.82 Aligned_cols=301 Identities=17% Similarity=0.128 Sum_probs=191.1
Q ss_pred CCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEe
Q 036119 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLA 544 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 544 (839)
++|+.|+++++.+ ..++. +..+++|++|++++|. +..++....+++|++|++++|. +..++. + ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i-~~~~~-~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKV-ASIQG-IEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNK-ITDISA-L--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCC-CCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEE
T ss_pred ccccEEEEeCCcc-ccchh-hhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCc-ccCchH-H--cCCCcCCEEE
Confidence 5788888888776 44543 7778888888888873 3444445567777777777764 333432 1 4556666666
Q ss_pred cccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCC
Q 036119 545 IRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSK 624 (839)
Q Consensus 545 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~ 624 (839)
+++|... .++.+..+++|+.|++++|.....+ +. ...+++|+.|++++|..
T Consensus 117 l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~---------------------------~~-~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 117 LNEDNIS-DISPLANLTKMYSLNLGANHNLSDL---------------------------SP-LSNMTGLNYLTVTESKV 167 (347)
T ss_dssp CTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCC---------------------------GG-GTTCTTCCEEECCSSCC
T ss_pred CcCCccc-CchhhccCCceeEEECCCCCCcccc---------------------------cc-hhhCCCCcEEEecCCCc
Confidence 6665432 2333444455555555555433322 22 11235677777777653
Q ss_pred chhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCc
Q 036119 625 LESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMH 704 (839)
Q Consensus 625 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~ 704 (839)
. .++.....++|+.|++++|.+.+..+ +..+++|+.|++++|......+ +..+++|++|++++|.... ++. +.
T Consensus 168 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~ 240 (347)
T 4fmz_A 168 K-DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LA 240 (347)
T ss_dssp C-CCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GT
T ss_pred C-CchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hh
Confidence 3 22333445777788887777654332 5677778888887776554333 5566777888887775433 443 67
Q ss_pred ccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeee
Q 036119 705 NLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWI 784 (839)
Q Consensus 705 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 784 (839)
.+++|++|++++|.+.. ++....+++|++|++++|.+.+. +. +. .+++|+.|++
T Consensus 241 ~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~-~~--~~----------------------~l~~L~~L~L 294 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDI-SV--LN----------------------NLSQLNSLFL 294 (347)
T ss_dssp TCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC-GG--GG----------------------GCTTCSEEEC
T ss_pred cCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCC-hh--hc----------------------CCCCCCEEEC
Confidence 77777777777776643 34445667777777777766542 11 11 1347888888
Q ss_pred cCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCC
Q 036119 785 SDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 785 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
++|...+..+..+..+++|+.|++++| .++.+++.+-.++|++|++++|+
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred cCCcCCCcChhHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 889877777777788999999999998 46666554444689999999986
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=225.47 Aligned_cols=295 Identities=20% Similarity=0.192 Sum_probs=182.5
Q ss_pred CceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCcc
Q 036119 294 PRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLE 372 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~ 372 (839)
+++++|+|++|. +..+ |..|.++++|++|+|++|.+.+..|..+.. +++|++|++++| .++ .+|.
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n-~l~-~~~~------ 97 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-----LFNLRTLGLRSN-RLK-LIPL------ 97 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCC-SCCT------
T ss_pred CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhC-----CccCCEEECCCC-cCC-ccCc------
Confidence 579999999999 6665 578999999999999999998877888877 999999999996 555 3442
Q ss_pred EEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccc
Q 036119 373 TLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVT 452 (839)
Q Consensus 373 ~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 452 (839)
..+..+++|++|++++|....+.. ..
T Consensus 98 -----------~~~~~l~~L~~L~Ls~n~i~~~~~-----------------------~~-------------------- 123 (477)
T 2id5_A 98 -----------GVFTGLSNLTKLDISENKIVILLD-----------------------YM-------------------- 123 (477)
T ss_dssp -----------TSSTTCTTCCEEECTTSCCCEECT-----------------------TT--------------------
T ss_pred -----------ccccCCCCCCEEECCCCccccCCh-----------------------hH--------------------
Confidence 235677888888888876432110 00
Q ss_pred cccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC--CCCCCCccEEEeccCccccccch
Q 036119 453 VEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ--AALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 453 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
+..+ ++|+.|++++|.+....+..+..+++|+.|++++|. ++.++. ...+++|+.|++.+|......+.
T Consensus 124 -------~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 124 -------FQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp -------TTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred -------cccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 1111 478899999998866667789999999999999984 444443 45689999999999875443332
Q ss_pred hhhhCCCCccceEecccCCCCcCCCCC-CCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCC
Q 036119 531 AWMQNSNSSLECLAIRSCNSLVSFPEV-ALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGN 609 (839)
Q Consensus 531 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 609 (839)
.+ ..+++|+.|++++|+....++.. ....+|+.|++++|. +..++...+.
T Consensus 195 ~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-------------------------- 245 (477)
T 2id5_A 195 SF--KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVR-------------------------- 245 (477)
T ss_dssp CS--CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHT--------------------------
T ss_pred hc--ccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhc--------------------------
Confidence 22 45677777777777666555422 222355555555552 3333322111
Q ss_pred cccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 610 LPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
.+++|+.|++++|......+..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 12456666666554322222111 12445555555554444444444445555555555544333222233344445555
Q ss_pred eccccc
Q 036119 689 TIYDCE 694 (839)
Q Consensus 689 ~l~~~~ 694 (839)
++++|+
T Consensus 326 ~l~~N~ 331 (477)
T 2id5_A 326 ILDSNP 331 (477)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 554444
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-23 Score=233.57 Aligned_cols=176 Identities=19% Similarity=0.250 Sum_probs=138.1
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCCCCeEeCC------CCCcccccCcCCCc--
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQLK------ELSDDDCLDFTRHQ-- 78 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~------~l~~~~~~~~~~~~-- 78 (839)
.+||+||||||||+. ++|+.+ ++|||||||||++.++..++....|+|+ +|+++|||+++...
T Consensus 242 ~~KRvLLVLDDVwd~--eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 242 PYENCLLVLLNVQNA--KAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp TTSSCEEEEESCCCH--HHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred cCCCEEEEEeCcChH--HHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 689999999999984 677764 2799999999999999766544567777 99999999654321
Q ss_pred -hHHHHHHHHHHHhCCChHHHHHHHHHhcCCC-ChhHHHHHHhccccccCCCCCcchhc---------h-hhhhhhhccC
Q 036119 79 -SLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD-DPRDWEFVLKTDIWNLRDSDILPALR---------L-KQCFAYSSLF 146 (839)
Q Consensus 79 -~~~~~~~~i~~~c~glPlal~~~g~~L~~~~-~~~~w~~~~~~~~~~~~~~~~~~~l~---------~-k~~f~~~a~f 146 (839)
...+++.++ |+|+||||+++|+.|+++. +.++|+..- ...+...++ . |.||++||+|
T Consensus 313 ~~~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~--------~~~I~aaLelSYd~Lp~eelK~cFL~LAIF 381 (1221)
T 1vt4_I 313 CRPQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVN--------CDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381 (1221)
T ss_dssp CCTTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCS--------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSS
T ss_pred CCHHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCC--------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 133444444 9999999999999999885 678887531 112222222 5 9999999999
Q ss_pred CCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceeecHHHHHHHH
Q 036119 147 PKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLAR 214 (839)
Q Consensus 147 ~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~~la~ 214 (839)
|+++.|+.+.++.+|+++| ++.++.++++|+++||++... ....|+|||++++++.
T Consensus 382 Ped~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 382 PPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp CTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 9999999999999998876 145788999999999999853 4678999999999764
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-21 Score=205.70 Aligned_cols=302 Identities=15% Similarity=0.070 Sum_probs=161.9
Q ss_pred CCceEEEeccCCCCCcccc-ccCCCCCccEEeecCCCCCcccC-CCCCCCCccEEEeccCccccccchhhhhCCCCccce
Q 036119 465 CRLQFLELSCCEGLTRLPQ-ALLTLSSLTEMRIHDCASLVSFP-QAALPSQLRSVVIEECDALESLPEAWMQNSNSSLEC 542 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 542 (839)
++++.|+++++.+ +.+|. .+..+++|+.|++++|......+ ....+++|++|++++|......+..+ ..+++|+.
T Consensus 45 ~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCE
T ss_pred CCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh--cCCCCCCE
Confidence 3566666666554 33443 24556666666666654322221 23345666666666665332222222 34566666
Q ss_pred EecccCCCCcCCCC--CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEec
Q 036119 543 LAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIE 620 (839)
Q Consensus 543 L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 620 (839)
|++++|... .+|. +..+++|++|++++|. +..++...+... ++|+.|++++|.... ++ ...+++|+.|+++
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQAT--TSLQNLQLSSNRLTH-VD--LSLIPSLFHANVS 194 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSC--TTCCEEECCSSCCSB-CC--GGGCTTCSEEECC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccCC--CCCCEEECCCCcCCc-cc--cccccccceeecc
Confidence 666665433 3332 2445566666666653 233322222211 345555555553221 11 1223456666666
Q ss_pred cCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc
Q 036119 621 DCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP 700 (839)
Q Consensus 621 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp 700 (839)
+|.... + ...++|+.|++++|.+... |. ..+++|+.|++++|..... ..+..+++|++|++++|...+..|
T Consensus 195 ~n~l~~-~---~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 195 YNLLST-L---AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SSCCSE-E---ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccccc-c---CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 553211 1 1124566666666665432 22 1346677777777755432 245556677777777776665556
Q ss_pred ccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccc
Q 036119 701 NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLT 780 (839)
Q Consensus 701 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~ 780 (839)
..+..+++|++|++++|.+....+....+++|++|++++|++.+..+.. .. +++|+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~----------------------l~~L~ 321 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ--PQ----------------------FDRLE 321 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH--HH----------------------HTTCS
T ss_pred hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc--cc----------------------cCcCC
Confidence 6677777777777777766543222345667777777777665322111 11 23577
Q ss_pred eeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 781 NLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 781 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
.|++++|+... ++ +..+++|+.|++++|+
T Consensus 322 ~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 322 NLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred EEECCCCccce-eC--chhhccCCEEEcCCCC
Confidence 77777776533 33 5667888888888874
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=214.13 Aligned_cols=302 Identities=15% Similarity=0.061 Sum_probs=183.4
Q ss_pred CCceEEEeccCCCCCcccc-ccCCCCCccEEeecCCCCCcccC-CCCCCCCccEEEeccCccccccchhhhhCCCCccce
Q 036119 465 CRLQFLELSCCEGLTRLPQ-ALLTLSSLTEMRIHDCASLVSFP-QAALPSQLRSVVIEECDALESLPEAWMQNSNSSLEC 542 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 542 (839)
++++.+++++|.+ ..+|. .+..+++|+.|++++|......+ ....+++|+.|++++|......+..+ ..+++|+.
T Consensus 51 ~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCE
T ss_pred CCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH--cCCCCCCE
Confidence 4788888888877 44544 46788899999998885443333 34568889999998887444333333 56788999
Q ss_pred EecccCCCCcCCCC--CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEec
Q 036119 543 LAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIE 620 (839)
Q Consensus 543 L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 620 (839)
|++++|... .+|. +..+++|+.|++++|.. ..++...+... ++|+.|++++|.... ++ ...+++|+.|+++
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l--~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~ 200 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQAT--TSLQNLQLSSNRLTH-VD--LSLIPSLFHANVS 200 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTC--TTCCEEECTTSCCSB-CC--GGGCTTCSEEECC
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcC--CcCcEEECcCCCCCC-cC--hhhhhhhhhhhcc
Confidence 999888554 4443 36678888888888853 44433322221 467777777764322 22 2233567777776
Q ss_pred cCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc
Q 036119 621 DCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP 700 (839)
Q Consensus 621 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp 700 (839)
+|.... + ....+|+.|++++|.+....+ . ..++|+.|++++|...+ +..+..+++|+.|++++|...+..|
T Consensus 201 ~n~l~~-l---~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 201 YNLLST-L---AIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SSCCSE-E---ECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred cCcccc-c---cCCchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 663221 1 122466667776666543221 1 23566677777665543 2345556667777777666666556
Q ss_pred ccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccc
Q 036119 701 NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLT 780 (839)
Q Consensus 701 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~ 780 (839)
..+..+++|+.|++++|.+....+....+++|++|++++|.+.+. |.. ... +++|+
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i-~~~-~~~----------------------l~~L~ 327 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERN-QPQ----------------------FDRLE 327 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC-GGG-HHH----------------------HTTCS
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc-Ccc-ccc----------------------CCCCC
Confidence 666666677777777666654322224456666666666666532 211 011 23677
Q ss_pred eeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 781 NLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 781 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
.|++++|.... ++ +..+++|+.|++++|+
T Consensus 328 ~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred EEECCCCCCCC-cC--hhhcCCCCEEEeeCCC
Confidence 77777776543 22 4667888888888875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=202.27 Aligned_cols=249 Identities=16% Similarity=0.146 Sum_probs=192.4
Q ss_pred CCceEEEeccCCCCC--ccccccCCCCCccEEeecC-CCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 465 CRLQFLELSCCEGLT--RLPQALLTLSSLTEMRIHD-CASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
.+++.|++++|.+.+ .+|..++.+++|++|++++ |...+.+|. ...+++|++|++++|.....+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 479999999999977 7899999999999999995 555545554 4468899999999987666677655 456888
Q ss_pred ceEecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEe
Q 036119 541 ECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKI 619 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 619 (839)
++|++++|.....+| .+..+++|++|++++|.....+|..+. ..+++|+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--------------------------~l~~~L~~L~L 181 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG--------------------------SFSKLFTSMTI 181 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--------------------------CCCTTCCEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh--------------------------hhhhcCcEEEC
Confidence 888888887665555 345566777777777653333433221 12236777777
Q ss_pred ccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc
Q 036119 620 EDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL 699 (839)
Q Consensus 620 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 699 (839)
++|.....++..+...+|+.|++++|.+.+..|..+..+++|+.|++++|......|. +..+++|++|++++|...+.+
T Consensus 182 ~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp CSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred cCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence 7776655555555554589999999988888888888999999999999987666655 667789999999999888888
Q ss_pred cccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCC
Q 036119 700 PNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKI 742 (839)
Q Consensus 700 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 742 (839)
|..+..+++|+.|++++|++...+|....+++|+.|++++|+.
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 9899999999999999999988888877888999999999873
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=190.98 Aligned_cols=292 Identities=14% Similarity=0.082 Sum_probs=155.5
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccC-CCCCCCCccEEEeccCccccccchhhhhCCCCccceEe
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFP-QAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLA 544 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 544 (839)
+++.++++++.+ ..+|..+ .++|+.|++++|......+ ....+++|++|++++|......+..+ ..+++|++|+
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEEE
T ss_pred cCCEEECCCCCc-cccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEEE
Confidence 455555555544 3444433 2456666666653222212 13345566666666554332223332 4456666666
Q ss_pred cccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCC
Q 036119 545 IRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSK 624 (839)
Q Consensus 545 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~ 624 (839)
+++|... .+|.... ++|++|+++++. +..++...+. .+++|+.|++++|..
T Consensus 109 L~~n~l~-~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~--------------------------~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP-SSLVELRIHDNR-IRKVPKGVFS--------------------------GLRNMNCIEMGGNPL 159 (332)
T ss_dssp CCSSCCC-SCCSSCC-TTCCEEECCSSC-CCCCCSGGGS--------------------------SCSSCCEEECCSCCC
T ss_pred CCCCcCC-ccCcccc-ccCCEEECCCCc-cCccCHhHhC--------------------------CCccCCEEECCCCcc
Confidence 6665432 3432222 466666666553 2333322211 123455555555543
Q ss_pred ch--hhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccccc
Q 036119 625 LE--SLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNC 702 (839)
Q Consensus 625 l~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~ 702 (839)
.. ..+..+...+|+.|++++|.+.+ +|..+ .++|++|++++|......+..+..+++|++|++++|...+..+..
T Consensus 160 ~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 160 ENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp BGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred ccCCCCcccccCCccCEEECcCCCCCc-cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 21 12222222356666666666543 44333 267777777777666555566667777777777777655555556
Q ss_pred CcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccce
Q 036119 703 MHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTN 781 (839)
Q Consensus 703 l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~ 781 (839)
+..+++|++|++++|.+. .+|.. ..+++|++|++++|++.+..+.. +... .+.....+|+.
T Consensus 237 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~----~~~~-------------~~~~~~~~l~~ 298 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND----FCPV-------------GFGVKRAYYNG 298 (332)
T ss_dssp GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS----SSCS-------------SCCSSSCCBSE
T ss_pred hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH----cccc-------------ccccccccccc
Confidence 777777777777777665 45543 55677777777777766432211 0000 00001246778
Q ss_pred eeecCCCCC--CccccCCCCCCccCeeeccCCC
Q 036119 782 LWISDMPDL--ESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 782 L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
|++++|+.. ...|..+..+++|+.+++++|.
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888765 4455566778888888888774
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=191.44 Aligned_cols=129 Identities=11% Similarity=-0.011 Sum_probs=80.5
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
+|++|++++|.+.+..|..+..+++|++|++++|......+..+..+++|++|++++|+. ..+|..+..+++|++|+++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECC
Confidence 444444444444444455666777777777777766655555666677777777777753 4677777777777777777
Q ss_pred cccCCccCCCC-------CCCCCcceEEecCCCCCC-ccccccCCCccccceEEEecC
Q 036119 716 ECPSVVSFPED-------GFPTNLQSLDVHDLKISK-PLLEWGSNRFTSLRRFTIWGG 765 (839)
Q Consensus 716 ~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~l~l~~~ 765 (839)
+|++....+.. ...++|+.|++++|++.. .++...+..+.+++.+++++|
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 77765432221 123677888888887752 222234566777888877663
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-22 Score=232.40 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=98.4
Q ss_pred HHHHHhcCCCceeEEEeCCCcccccccccccCc--CcCcEeEecCccccccccCCCCCCccccCCCccEEeccCcccccc
Q 036119 285 VLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNL--KHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQG 362 (839)
Q Consensus 285 ~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L--~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~ 362 (839)
.+...+..+++|++|+|++|......+..+... .+|++|++++|.. ..+.++. .....+++|++|++++| .+.+
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~-~~~~~~~~L~~L~L~~~-~~~~ 178 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLL-SIVTHCRKIKTLLMEES-SFSE 178 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHH-HHHHHCTTCSEEECTTC-EEEC
T ss_pred HHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHH-HHHhhCCCCCEEECccc-cccC
Confidence 344455567777777777776333334445443 3477777777651 0010000 01123677777777776 3332
Q ss_pred C-------CCcCCCCccEEeecccCc-------ccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccc
Q 036119 363 T-------LPRRLLLLETLDITSCDQ-------LLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETR 428 (839)
Q Consensus 363 ~-------lp~~l~~L~~L~l~~~~~-------l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~ 428 (839)
. ++..+++|++|+++++.- ++..+..+++|++|++.+|....+ ..
T Consensus 179 ~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l---------------------~~ 237 (592)
T 3ogk_B 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL---------------------VG 237 (592)
T ss_dssp CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG---------------------HH
T ss_pred cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH---------------------HH
Confidence 2 233566677777665541 223344566666666666542110 01
Q ss_pred cCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcc-cCC
Q 036119 429 LPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVS-FPQ 507 (839)
Q Consensus 429 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-l~~ 507 (839)
....+++|+.|.+..+....... .....+... ++|+.|.++++.. ..+|..+..+++|++|++++|..... +..
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~~-~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMP---EKYMNLVFP-RKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCT---TSSSCCCCC-TTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHhhhhHHHhhcccccccccchH---HHHHHhhcc-ccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 23344566666655422111000 001111222 4566666655432 44555555566666666666541111 100
Q ss_pred -CCCCCCccEEEec
Q 036119 508 -AALPSQLRSVVIE 520 (839)
Q Consensus 508 -~~~~~~L~~L~l~ 520 (839)
...+++|+.|++.
T Consensus 313 ~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 313 LIQKCPNLEVLETR 326 (592)
T ss_dssp HHTTCTTCCEEEEE
T ss_pred HHHhCcCCCEEecc
Confidence 2345566666655
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-20 Score=192.24 Aligned_cols=130 Identities=10% Similarity=-0.060 Sum_probs=84.6
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|+. ..+|..+..+++|+.|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEEC
Confidence 3455555555555555555667777788888887766655555566677888888887754 467777777888888888
Q ss_pred ccccCCccCCCC-------CCCCCcceEEecCCCCCC-ccccccCCCccccceEEEecC
Q 036119 715 SECPSVVSFPED-------GFPTNLQSLDVHDLKISK-PLLEWGSNRFTSLRRFTIWGG 765 (839)
Q Consensus 715 ~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~l~l~~~ 765 (839)
++|++....+.. ...++|+.|++++|++.. .++...+..+++|+.++++++
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 887765433222 114668888888888761 233334567888888888764
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-21 Score=198.61 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=87.5
Q ss_pred CccceEecccCCCCc--CCC-CCCCCCCccEEEEcC-CCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccc
Q 036119 538 SSLECLAIRSCNSLV--SFP-EVALPSQLRTIIIGG-CHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQS 613 (839)
Q Consensus 538 ~~L~~L~l~~~~~l~--~~~-~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 613 (839)
.+++.|++++|.... .+| .+..+++|++|++++ +.....+|..+... ++|++|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l---~~L~~L~Ls~n--------------- 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL---TQLHYLYITHT--------------- 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC---TTCSEEEEEEE---------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC---CCCCEEECcCC---------------
Confidence 456677777665544 333 334555666666664 33222344332211 24444444444
Q ss_pred cceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCC-CcceEecc
Q 036119 614 LKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPST-KLTELTIY 691 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~ 691 (839)
.....++..+ ..++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|+++
T Consensus 112 ---------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 112 ---------NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp ---------CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred ---------eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 3332333222 224555555555555555555555555555555555554444554444444 55555555
Q ss_pred cccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
+|...+.+|..+..++ |+.|++++|.+....|.. ..+++|++|++++|.+.+
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 5554445555555554 555555555544333322 344555555555555443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=242.14 Aligned_cols=197 Identities=24% Similarity=0.429 Sum_probs=153.2
Q ss_pred hhhhcCCC--cEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHH-hCCCCeEeCCC-CCcccccCcC--
Q 036119 2 LKKQLFGK--KFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAER-MGADPVYQLKE-LSDDDCLDFT-- 75 (839)
Q Consensus 2 l~~~l~~k--~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-~~~~~~~~~~~-l~~~~~~~~~-- 75 (839)
++..+.+| |+||||||||+. .+|+.+ ++|||||||||++.|+.. ++....++++. |+++|||+++
T Consensus 227 l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~ 297 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSL 297 (1249)
T ss_dssp HHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHH
T ss_pred HHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHH
Confidence 44556655 999999999875 455543 689999999999999954 45668999996 9999999543
Q ss_pred ----CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhcccccc----CCC------CCcchhc------
Q 036119 76 ----RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNL----RDS------DILPALR------ 135 (839)
Q Consensus 76 ----~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~----~~~------~~~~~l~------ 135 (839)
..+.+.+.+.+|+++|+|+||||+++|+.|++++ ..|+..++...... ... .+...++
T Consensus 298 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L 375 (1249)
T 3sfz_A 298 FVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375 (1249)
T ss_dssp HHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTS
T ss_pred hhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhC
Confidence 2345678899999999999999999999999874 46777665421111 111 1122222
Q ss_pred ---hhhhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCC-CcceeecHHHHH
Q 036119 136 ---LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYD-ASRFVMHDLIND 211 (839)
Q Consensus 136 ---~k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~-~~~~~mHdlv~~ 211 (839)
.|.||.|||+||+++.|+.+.++.+|.++ ++.++.++++|++++|++..... ...|+|||++|+
T Consensus 376 ~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~ 443 (1249)
T 3sfz_A 376 REDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVD 443 (1249)
T ss_dssp CTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHH
T ss_pred CHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHH
Confidence 79999999999999999999999999543 36788999999999999976522 335999999999
Q ss_pred HHHHHccCce
Q 036119 212 LARWAAGEIC 221 (839)
Q Consensus 212 la~~i~~~e~ 221 (839)
+|+..+.+|.
T Consensus 444 ~~~~~~~~~~ 453 (1249)
T 3sfz_A 444 FLTEKNRSQL 453 (1249)
T ss_dssp HHHHHTGGGH
T ss_pred HHHhhhhHHH
Confidence 9999977653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-22 Score=233.05 Aligned_cols=101 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred CCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcc----cCCCCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVS----FPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
++|+.|++++|.. ..++..+..+++|+.|.++++..... ......+++|+.|.+.++. ...++..+ ..+++|
T Consensus 220 ~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L 295 (592)
T 3ogk_B 220 RSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQI 295 (592)
T ss_dssp TTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGC
T ss_pred CCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHH--hhcCCC
Confidence 5788888888766 44667777788888888875432211 1223446777777776642 22333222 345677
Q ss_pred ceEecccCCCCcCCC--CCCCCCCccEEEEc
Q 036119 541 ECLAIRSCNSLVSFP--EVALPSQLRTIIIG 569 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~ 569 (839)
++|++++|....... ....+++|+.|++.
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 777777765211110 12345566666665
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=186.10 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=117.2
Q ss_pred cccceeEeccCCCch--hhhhh-cCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 612 QSLKYLKIEDCSKLE--SLAER-LDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++|+.|++++|.... ..+.. ...++|+.|++++|.+.. +|..+ .++|++|++++|......+..+..+++|++|
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 345555555554321 11211 223677777777777653 44443 3899999999998777667778888999999
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCcccccc-----CCCccccceEEE
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWG-----SNRFTSLRRFTI 762 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~~l~~L~~l~l 762 (839)
++++|...+..+..+..+++|++|++++|.+. .+|.. ..+++|++|++++|++.+..+... ....+.++.+++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 99999876666667889999999999999886 55543 678899999999999886433221 123578889999
Q ss_pred ecCCCCCcCCCC----CCcccceeeecCCC
Q 036119 763 WGGCPDLVSPPP----FPASLTNLWISDMP 788 (839)
Q Consensus 763 ~~~~~~~~~~~~----~~~~L~~L~l~~~~ 788 (839)
.+|......++. .+.+++.+++++|.
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ecCcccccccCccccccccceeEEEecccC
Confidence 887544322221 35678899998873
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-22 Score=225.99 Aligned_cols=366 Identities=23% Similarity=0.196 Sum_probs=193.7
Q ss_pred HHHHhcCCCceeEEEeCCCcccc-----cccccccCcCcCcEeEecCccccccccCCCCCCccccCC----CccEEeccC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIF-----NLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFP----KLRTLSLDN 356 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~----~L~~L~L~~ 356 (839)
....+..+++|++|++++|. +. .+|..+..+++|++|++++|.+.+..+..+.. .+. +|++|++++
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ----GLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH----TTCSTTCCCCEEECTT
T ss_pred HHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH----HHhhCCCceeEEEccC
Confidence 44445666666777776666 44 34555666666777777666653322211110 122 466666665
Q ss_pred ccccccCCCcCCCCccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCC
Q 036119 357 CCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSL 436 (839)
Q Consensus 357 ~~~l~~~lp~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L 436 (839)
| .+.. .++..++..+..+++|++|++++|....... ......+....
T Consensus 95 n-~i~~--------------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~---------------~~l~~~l~~~~--- 141 (461)
T 1z7x_W 95 C-CLTG--------------AGCGVLSSTLRTLPTLQELHLSDNLLGDAGL---------------QLLCEGLLDPQ--- 141 (461)
T ss_dssp S-CCBG--------------GGHHHHHHHTTSCTTCCEEECCSSBCHHHHH---------------HHHHHHHTSTT---
T ss_pred C-CCCH--------------HHHHHHHHHHccCCceeEEECCCCcCchHHH---------------HHHHHHHhcCC---
Confidence 4 2220 0011335667778888888888775321000 00000000001
Q ss_pred CceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCc----cccccCCCCCccEEeecCCCCCcccCC-C---
Q 036119 437 NWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTR----LPQALLTLSSLTEMRIHDCASLVSFPQ-A--- 508 (839)
Q Consensus 437 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~l~~-~--- 508 (839)
++|++|++++|.+... ++..+..+++|++|++++|......+. .
T Consensus 142 ----------------------------~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 193 (461)
T 1z7x_W 142 ----------------------------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193 (461)
T ss_dssp ----------------------------CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred ----------------------------CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH
Confidence 3577777777766442 344556677788888877753221100 0
Q ss_pred --CCCCCccEEEeccCccccc----cchhhhhCCCCccceEecccCCCCcC----C-CC-CCCCCCccEEEEcCCCCCcC
Q 036119 509 --ALPSQLRSVVIEECDALES----LPEAWMQNSNSSLECLAIRSCNSLVS----F-PE-VALPSQLRTIIIGGCHALES 576 (839)
Q Consensus 509 --~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~L~~L~l~~~~~l~~----~-~~-~~~~~~L~~L~l~~~~~l~~ 576 (839)
...++|+.|++++|..... ++..+ ..+++|++|++++|..... + +. ....++|++|++++|. +..
T Consensus 194 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~ 270 (461)
T 1z7x_W 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITA 270 (461)
T ss_dssp HHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCH
T ss_pred HhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCH
Confidence 0134677777776643221 22222 2346666676666642211 0 00 1123455555555552 221
Q ss_pred CchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhh----hhhcC--CCCcceeeecccccccC
Q 036119 577 LPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESL----AERLD--NTSLEEISISVLENLKS 650 (839)
Q Consensus 577 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~--~~~L~~L~l~~~~~~~~ 650 (839)
..... ++......++|++|++++|...... ...+. .++|++|++++|.+.+.
T Consensus 271 ~~~~~----------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 271 KGCGD----------------------LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHHH----------------------HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHHH----------------------HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 00000 0100011245777777776543221 11111 15788888888877654
Q ss_pred ----ccccccCCCCCCeEEecCCCCCcccCCCCC-----CCCCcceEecccccccc----cccccCcccccccccccccc
Q 036119 651 ----LPADLHNLHHLQKIWIFGCPNLESFPEEGL-----PSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 651 ----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~ 717 (839)
++..+..+++|++|++++|...+..+..+. ..++|++|++++|+... .+|..+..+++|++|++++|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 455666778888888888866543222111 25688899998887654 67777888888888888888
Q ss_pred cCCcc--------CCCCCCCCCcceEEecCCCCCC
Q 036119 718 PSVVS--------FPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 718 ~~~~~--------~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
++... +| ....+|+.|++.++....
T Consensus 409 ~i~~~~~~~l~~~l~--~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 409 CLGDAGILQLVESVR--QPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp SCCHHHHHHHHHHHT--STTCCCCEEECTTCCCCH
T ss_pred CCCHHHHHHHHHHhc--cCCcchhheeecccccCH
Confidence 77542 12 123468888887776653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=196.31 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=57.1
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccE
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLET 373 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~ 373 (839)
.++++|++++|. +..+|..+. ++|++|++++|.+. .+|. . +++|++|++++| .++ .+|..+++|++
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~-----l~~L~~L~Ls~N-~l~-~lp~~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPA---L-----PPELRTLEVSGN-QLT-SLPVLPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCCCS-CCCC---C-----CTTCCEEEECSC-CCS-CCCCCCTTCCE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCCCC-CCCC---c-----CCCCCEEEcCCC-cCC-cCCCCCCCCCE
Confidence 469999999999 889998876 89999999999985 4665 2 789999999996 566 56665556666
Q ss_pred Eeeccc
Q 036119 374 LDITSC 379 (839)
Q Consensus 374 L~l~~~ 379 (839)
|++++|
T Consensus 106 L~Ls~N 111 (622)
T 3g06_A 106 LSIFSN 111 (622)
T ss_dssp EEECSC
T ss_pred EECcCC
Confidence 655554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-19 Score=183.30 Aligned_cols=230 Identities=24% Similarity=0.304 Sum_probs=145.6
Q ss_pred CCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccceE
Q 036119 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLECL 543 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 543 (839)
++++.|++++|.+ ..+|..+..+++|++|++++|... .+|. ...+++|++|++++|... .+|..+ ..+++|+.|
T Consensus 81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEE
T ss_pred cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEE
Confidence 5889999999988 488888888999999999998654 6664 345778888888887543 555544 445677777
Q ss_pred ecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCC
Q 036119 544 AIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCS 623 (839)
Q Consensus 544 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~ 623 (839)
++++|.....+|.. +....+.+. ...+++|+.|++++|.
T Consensus 156 ~L~~n~~~~~~p~~-----~~~~~~~~~------------------------------------~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 156 SIRACPELTELPEP-----LASTDASGE------------------------------------HQGLVNLQSLRLEWTG 194 (328)
T ss_dssp EEEEETTCCCCCSC-----SEEEC-CCC------------------------------------EEESTTCCEEEEEEEC
T ss_pred ECCCCCCccccChh-----Hhhccchhh------------------------------------hccCCCCCEEECcCCC
Confidence 77776666555531 110000000 0001234444444432
Q ss_pred Cchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccccc
Q 036119 624 KLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNC 702 (839)
Q Consensus 624 ~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~ 702 (839)
.. .++..+ ..++|+.|++++|.+.+ +|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..+.+|..
T Consensus 195 l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 195 IR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp CC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred cC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 22 222222 22556666666665543 4445667777777777777777777777777777777777777777777777
Q ss_pred CcccccccccccccccCCccCCCC-CCCCCcceEEecCCCC
Q 036119 703 MHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKI 742 (839)
Q Consensus 703 l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 742 (839)
+.++++|+.|++++|+.++.+|.. +.+++|+.+++..+.+
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 777777777777777777777654 5667777777765543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-19 Score=184.66 Aligned_cols=220 Identities=19% Similarity=0.199 Sum_probs=113.6
Q ss_pred CCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCcce
Q 036119 561 SQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEE 639 (839)
Q Consensus 561 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~ 639 (839)
++++.|+++++. +..+|...... ++|++|++++|... .++.....+++|++|++++|... .++..+ ..++|++
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~l---~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFRL---SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGGG---TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cceeEEEccCCC-chhcChhhhhC---CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 477777777764 44666544331 35666666665433 33332233345555555555333 333222 2245555
Q ss_pred eeecccccccCccccccC---------CCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccc
Q 036119 640 ISISVLENLKSLPADLHN---------LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLL 710 (839)
Q Consensus 640 L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~ 710 (839)
|++++|+..+.+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|... .+|..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 555555555544443332 555555555555333 44444444455555555554332 2444445555555
Q ss_pred ccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCC
Q 036119 711 NLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPD 789 (839)
Q Consensus 711 ~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 789 (839)
+|++++|.+...+|.. +.+++|++|++++|.+.+.+|.. +. -+++|+.|++++|+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~----------------------~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IH----------------------RLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GG----------------------GCTTCCEEECTTCTT
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hh----------------------cCCCCCEEeCCCCCc
Confidence 5555555554444433 34445555555555444433321 00 124677777777777
Q ss_pred CCccccCCCCCCccCeeeccCC
Q 036119 790 LESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 790 l~~~~~~~~~l~~L~~L~l~~c 811 (839)
.+.+|..+.++++|+.+.+..+
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhccHHHhhccCceEEeCCHH
Confidence 7777777777777777777754
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-21 Score=217.52 Aligned_cols=369 Identities=16% Similarity=0.104 Sum_probs=226.9
Q ss_pred CCceEEEeccCCCCCcccc-ccCCCCCccEEeecCCCCCc----ccCC-CCCCCCccEEEeccCccccccchhhhhCCCC
Q 036119 465 CRLQFLELSCCEGLTRLPQ-ALLTLSSLTEMRIHDCASLV----SFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNS 538 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~----~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 538 (839)
++|+.|+++++.+...... .+..+++|++|++++|.... .++. ...+++|++|++++|......+..+. ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL-QGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH-HTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH-HHHh
Confidence 5778888877776432222 25667788888888875332 1221 23457788888887763322222221 2233
Q ss_pred ----ccceEecccCCCCc----CCC-CCCCCCCccEEEEcCCCCCcCCchhhhcc--cCCCCcceEEEeecCCcccc---
Q 036119 539 ----SLECLAIRSCNSLV----SFP-EVALPSQLRTIIIGGCHALESLPEAWMHN--ELPATLEHLEVSYCSNLALL--- 604 (839)
Q Consensus 539 ----~L~~L~l~~~~~l~----~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~--- 604 (839)
+|++|++++|.... .++ .+..+++|++|++++|..-...+...... ...++|++|++++|......
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888876442 122 33556688888888875321111111111 00136888888887533211
Q ss_pred -cCCCCcccccceeEeccCCCchhhhhh----c--CCCCcceeeecccccccC----ccccccCCCCCCeEEecCCCCCc
Q 036119 605 -SRNGNLPQSLKYLKIEDCSKLESLAER----L--DNTSLEEISISVLENLKS----LPADLHNLHHLQKIWIFGCPNLE 673 (839)
Q Consensus 605 -~~~~~~~~~L~~L~l~~~~~l~~~~~~----~--~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~ 673 (839)
+......++|++|++++|......... + ..++|++|++++|.+... ++..+..+++|++|++++|....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 111112357999999988744332221 1 246899999999988763 56667788999999999997544
Q ss_pred cc-----CCCCCCCCCcceEeccccccccc----ccccCcccccccccccccccCCccCCCC------CCCCCcceEEec
Q 036119 674 SF-----PEEGLPSTKLTELTIYDCENLKA----LPNCMHNLTSLLNLKISECPSVVSFPED------GFPTNLQSLDVH 738 (839)
Q Consensus 674 ~~-----~~~~~~~~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~~~~~~~~~~------~~~~~L~~L~l~ 738 (839)
.. +.....+++|++|++++|..... ++..+..+++|++|++++|.+....+.. ...++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 22223467999999999965543 6777788899999999999764322111 223689999999
Q ss_pred CCCCCCccc---cccCCCccccceEEEecCCCCCcC-------CCCCCcccceeeecCCCCCC----ccccCCCCCCccC
Q 036119 739 DLKISKPLL---EWGSNRFTSLRRFTIWGGCPDLVS-------PPPFPASLTNLWISDMPDLE----SISSIGENLTSLK 804 (839)
Q Consensus 739 ~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~-------~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~ 804 (839)
+|.+.+... ......+++|+.|++++|...-.. +....++|+.|++++|.... .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 998875321 112345688999999875221111 11114589999999997764 6777777789999
Q ss_pred eeeccCCCCccccCCC----CC---CcccceeeecCCC
Q 036119 805 TLRLSDCPKLKYFSEQ----GL---PKSLLQLHIYACP 835 (839)
Q Consensus 805 ~L~l~~c~~l~~l~~~----~~---~~sL~~L~i~~c~ 835 (839)
+|++++| .++..... .+ ..+|+.|++.++.
T Consensus 402 ~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 402 ELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp EEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred EEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 9999998 45442110 11 1367777776654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-21 Score=221.77 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=49.9
Q ss_pred ccCCCCCCeEEecCCCCCcccCCCCC-CCCCcceEecccccccccccccC-cccccccccccccccCCccCCC--CCCCC
Q 036119 655 LHNLHHLQKIWIFGCPNLESFPEEGL-PSTKLTELTIYDCENLKALPNCM-HNLTSLLNLKISECPSVVSFPE--DGFPT 730 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 730 (839)
+..+++|+.|++++ ......+..+. .+++|+.|++++|......+..+ ..+++|++|++++|++...... ...++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 44567777777765 23322222222 25677777777776544333333 5567777777777776322111 13457
Q ss_pred CcceEEecCCCCC
Q 036119 731 NLQSLDVHDLKIS 743 (839)
Q Consensus 731 ~L~~L~l~~~~~~ 743 (839)
+|++|++++|+++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 7777888777764
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=185.39 Aligned_cols=91 Identities=33% Similarity=0.401 Sum_probs=57.8
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEec
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 545 (839)
+++.|++++|.+ ..+|..+. ++|+.|++++|. ++.+|. .+++|+.|++++|. ++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEE
T ss_pred CCcEEEecCCCc-CccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEEC
Confidence 577788887776 46676554 678888888773 445655 56777777777775 444443 3466777777
Q ss_pred ccCCCCcCCCCCCCCCCccEEEEcCC
Q 036119 546 RSCNSLVSFPEVALPSQLRTIIIGGC 571 (839)
Q Consensus 546 ~~~~~l~~~~~~~~~~~L~~L~l~~~ 571 (839)
++|.. ..+|. .+++|+.|++++|
T Consensus 109 s~N~l-~~l~~--~l~~L~~L~L~~N 131 (622)
T 3g06_A 109 FSNPL-THLPA--LPSGLCKLWIFGN 131 (622)
T ss_dssp CSCCC-CCCCC--CCTTCCEEECCSS
T ss_pred cCCcC-CCCCC--CCCCcCEEECCCC
Confidence 66543 33443 4456666666665
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=183.78 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=147.5
Q ss_pred cEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceeee
Q 036119 564 RTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEISI 642 (839)
Q Consensus 564 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l 642 (839)
..++..+. .+..+|.. +|++++.|+++++......+.....+++|+.|++++|......+..+. .++|++|++
T Consensus 57 ~~v~c~~~-~l~~iP~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQG-----IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp CEEECCSS-CCSSCCSC-----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEECCC-CcCccCCC-----CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 34443332 45566643 345788888888765444343344456788888887754443333333 477888888
Q ss_pred cccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccccccccCCc
Q 036119 643 SVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 721 (839)
++|++....+..+..+++|++|++++|.+....+..+..+++|+.|++++|+.++.++. .+..+++|+.|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence 88877665555677788888888888866544444666777888888887777776655 4677788888888887765
Q ss_pred cCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCC
Q 036119 722 SFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLT 801 (839)
Q Consensus 722 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 801 (839)
.+|....+++|++|++++|.+.+..+. .+..+++ |+.|++++|......+..+..++
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~----------------------L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNHFPEIRPG-SFHGLSS----------------------LKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSEECGG-GGTTCTT----------------------CCEEECTTSCCCEECTTTTTTCT
T ss_pred ccccccccccccEEECcCCcCcccCcc-cccCccC----------------------CCEEEeCCCcCceECHHHhcCCC
Confidence 456666777888888888877754333 2344444 45555555544444444445555
Q ss_pred ccCeeeccCCCCccccCCCCC--CcccceeeecCCC
Q 036119 802 SLKTLRLSDCPKLKYFSEQGL--PKSLLQLHIYACP 835 (839)
Q Consensus 802 ~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~i~~c~ 835 (839)
+|+.|++++| +++.++...+ .++|+.|++++||
T Consensus 267 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 267 SLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 5555555555 4444444322 2345555555543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=180.45 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=148.0
Q ss_pred ccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceee
Q 036119 563 LRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEIS 641 (839)
Q Consensus 563 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~ 641 (839)
...++..+ ..+..+|... +++++.|++++|......+.....+++|+.|++++|......+..+. .++|++|+
T Consensus 45 ~~~v~c~~-~~l~~iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPDGI-----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCS-CCCSSCCSCC-----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCEEEeCC-CCcCcCCCCC-----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 34444444 3466666533 35788888888764443333344456788888888764443333333 47888888
Q ss_pred ecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccccccccCC
Q 036119 642 ISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 642 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~ 720 (839)
+++|++....+..+..+++|++|++++|.+....+..+..+++|++|++++|+.++.++. .+.++++|+.|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 888877765555677888888888888876655555677778888888888777776655 5777888888888888765
Q ss_pred ccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC--CCCCcccceeeecCCCCCCccccCCC
Q 036119 721 VSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP--PPFPASLTNLWISDMPDLESISSIGE 798 (839)
Q Consensus 721 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~ 798 (839)
.+|....+++|++|++++|.+.+..+. .+..+++|+.|++++|....... ...+++|+.|++++|......+..+.
T Consensus 199 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 -EIPNLTPLIKLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp -SCCCCTTCSSCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred -cccccCCCcccCEEECCCCccCccChh-hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 566667778888888888877754332 34455555555555432111100 01233455555555544333333334
Q ss_pred CCCccCeeeccCC
Q 036119 799 NLTSLKTLRLSDC 811 (839)
Q Consensus 799 ~l~~L~~L~l~~c 811 (839)
.+++|+.|++++|
T Consensus 277 ~l~~L~~L~L~~N 289 (440)
T 3zyj_A 277 PLHHLERIHLHHN 289 (440)
T ss_dssp SCTTCCEEECCSS
T ss_pred cccCCCEEEcCCC
Confidence 4555555555554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=172.67 Aligned_cols=177 Identities=19% Similarity=0.090 Sum_probs=107.1
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCcc-ccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLP-ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
++|++|++++|............++|++|++++|.+.+..+ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 45666666665433211222334677777777776655443 45667777777777777666656666666777777777
Q ss_pred ccccccc-cccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCC
Q 036119 691 YDCENLK-ALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPD 768 (839)
Q Consensus 691 ~~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 768 (839)
++|...+ .+|..+..+++|++|++++|.+....|.. ..+++|++|++++|.+.+..+. .+..++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~------------- 223 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLN------------- 223 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-GGTTCT-------------
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-hccCcc-------------
Confidence 7776554 46667777777777777777766554433 4567777777777776643221 122223
Q ss_pred CcCCCCCCcccceeeecCCCCCCccccCCCCCC-ccCeeeccCC
Q 036119 769 LVSPPPFPASLTNLWISDMPDLESISSIGENLT-SLKTLRLSDC 811 (839)
Q Consensus 769 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~c 811 (839)
+|+.|++++|...+..|..+..++ +|+.|++++|
T Consensus 224 ---------~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 224 ---------SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp ---------TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred ---------cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 455555555655555555555553 5666666655
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-18 Score=179.07 Aligned_cols=267 Identities=13% Similarity=0.095 Sum_probs=124.5
Q ss_pred eEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEecc
Q 036119 542 CLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIED 621 (839)
Q Consensus 542 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 621 (839)
..+.+++ .++.+|. ..+++|++|+++++. +..++...+... ++|+.|++++|......+.....+++|++|++++
T Consensus 35 ~c~~~~~-~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSG-SLNSIPS-GLTEAVKSLDLSNNR-ITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCST-TCSSCCT-TCCTTCCEEECTTSC-CCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeeCCCC-Ccccccc-cccccCcEEECCCCc-CcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3444443 3445554 234578888888774 444443222221 3566666665533222222222234555555555
Q ss_pred CCCchhhhhhc-CCCCcceeeecccccccCcc-ccccCCCCCCeEEecCCCCCccc-CCCCCCCCCcceEeccccccccc
Q 036119 622 CSKLESLAERL-DNTSLEEISISVLENLKSLP-ADLHNLHHLQKIWIFGCPNLESF-PEEGLPSTKLTELTIYDCENLKA 698 (839)
Q Consensus 622 ~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~ 698 (839)
|......+..+ ..++|++|++++|++....+ ..+..+++|++|++++|.....+ +..+..+++|++|++++|...+.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 54332222212 23555555555555443222 23445555555555555322222 33444555555555555554444
Q ss_pred ccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCC
Q 036119 699 LPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFP 776 (839)
Q Consensus 699 lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 776 (839)
.|..+..+++|++|++++|.+. .+|.. ..+++|++|++++|.+.+..+.. ++ .....
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----l~----------------~~~~~ 248 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE----LS----------------TGETN 248 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------CC
T ss_pred CHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc----cc----------------ccccc
Confidence 4555555555555555555542 22211 12455555555555554321110 00 00012
Q ss_pred cccceeeecCCCCCC----ccccCCCCCCccCeeeccCCCCccccCCCC--CCcccceeeecCCC
Q 036119 777 ASLTNLWISDMPDLE----SISSIGENLTSLKTLRLSDCPKLKYFSEQG--LPKSLLQLHIYACP 835 (839)
Q Consensus 777 ~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~i~~c~ 835 (839)
..++.++++++.... .+|..+..+++|+.|++++| +++.+|... -.++|++|++++|+
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 344555555554322 24444455666666666665 555555432 12456666666654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=180.52 Aligned_cols=227 Identities=18% Similarity=0.167 Sum_probs=139.6
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+|++++.|++++|.+....+..+.++++|+.|++++|......+. ...+++|+.|++++|. +..++...+ ..+++|+
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 150 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSKLR 150 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTTCC
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCCCC
Confidence 346899999999988666677888999999999998854433322 3457888888888876 344443322 4567788
Q ss_pred eEecccCCCCcCCC--CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEe
Q 036119 542 CLAIRSCNSLVSFP--EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKI 619 (839)
Q Consensus 542 ~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 619 (839)
+|++++|... .++ .+..+++|+.|++++|..+..++...+. .+++|+.|++
T Consensus 151 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~--------------------------~l~~L~~L~L 203 (452)
T 3zyi_A 151 ELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE--------------------------GLFNLKYLNL 203 (452)
T ss_dssp EEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTT--------------------------TCTTCCEEEC
T ss_pred EEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhcc--------------------------CCCCCCEEEC
Confidence 8888777543 333 2345566666666666555544432222 1234555555
Q ss_pred ccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc
Q 036119 620 EDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL 699 (839)
Q Consensus 620 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 699 (839)
++|.. ..++.....++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|+.....
T Consensus 204 ~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 204 GMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp TTSCC-SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCcc-cccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 55532 22333333456666666666666655666666666666666666665555555666666666666666544433
Q ss_pred cccCcccccccccccccccC
Q 036119 700 PNCMHNLTSLLNLKISECPS 719 (839)
Q Consensus 700 p~~l~~l~~L~~L~l~~~~~ 719 (839)
+..+..+++|+.|++++|+.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCE
T ss_pred hHHhccccCCCEEEccCCCc
Confidence 44456666666666666654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-19 Score=207.17 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=66.3
Q ss_pred cccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCccccc--ccccccCcCcCcEeEecCccccccccCCC
Q 036119 261 DVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFN--LPNEIGNLKHLRCLNLSRTKWEEWIPCGA 338 (839)
Q Consensus 261 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~~~~~~~~~p~~~ 338 (839)
.+++|+.| .+..+.+....+......+++|++|++++|..++. ++..+.++++|++|++++|.+.+..+..+
T Consensus 103 ~~~~L~~L------~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 103 SYTWLEEI------RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HCTTCCEE------EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred hCCCCCeE------EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 34555555 22333333333333333566777777776632433 44444466777777777776543322211
Q ss_pred CCCccccCCCccEEeccCcc-cccc----CCCcCCCCccEEeecccC---cccccCCCCCCccEEEeccc
Q 036119 339 GQEVDEVFPKLRTLSLDNCC-KLQG----TLPRRLLLLETLDITSCD---QLLVTIQCLPALSELQIDGC 400 (839)
Q Consensus 339 ~~~~~~~l~~L~~L~L~~~~-~l~~----~lp~~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~ 400 (839)
.. ....+++|++|++++|. .+.. .+...+++|++|++.+|. .++..+..+++|++|++..+
T Consensus 177 ~~-~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 177 SH-FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp GG-SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HH-HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 11 11225677777777653 0110 011134666666666653 23444555666666665544
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-17 Score=177.07 Aligned_cols=231 Identities=16% Similarity=0.083 Sum_probs=157.0
Q ss_pred CCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhh
Q 036119 550 SLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLA 629 (839)
Q Consensus 550 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 629 (839)
.+..+|. ..+++++.|+++++. +..++...+... ++|+.|++++|......+.....+++|++|++++|......+
T Consensus 54 ~l~~iP~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l--~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 54 NLREVPD-GISTNTRLLNLHENQ-IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CCSSCCS-CCCTTCSEEECCSCC-CCEECTTTTSSC--SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CcCcCCC-CCCCCCcEEEccCCc-CCeeCHHHhhCC--CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH
Confidence 3445553 334688888888874 444443333332 478888888886443332323345678888888875443323
Q ss_pred hhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC-CCCCCCCcceEecccccccccccccCcccc
Q 036119 630 ERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIYDCENLKALPNCMHNLT 707 (839)
Q Consensus 630 ~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~ 707 (839)
..+ ..++|+.|++++|.+....+..+..+++|++|++++|.....++. .+..+++|++|++++|. +..+| .+..++
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~ 207 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLI 207 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCS
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCc
Confidence 223 347888888888888766666777888888888888777666655 56678888888888885 44566 477888
Q ss_pred cccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC----CCccccee
Q 036119 708 SLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASLTNL 782 (839)
Q Consensus 708 ~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L~~L 782 (839)
+|++|++++|.+....|.. ..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|. +..++. .+++|+.|
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNN--LTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSC--CCCCCTTTTSSCTTCCEE
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCC--CCccChhHhccccCCCEE
Confidence 8888888888877655544 667888888888888876433 345678888888888753 333332 35678888
Q ss_pred eecCCCC
Q 036119 783 WISDMPD 789 (839)
Q Consensus 783 ~l~~~~~ 789 (839)
++++|+.
T Consensus 285 ~L~~Np~ 291 (440)
T 3zyj_A 285 HLHHNPW 291 (440)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 8888874
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=197.67 Aligned_cols=191 Identities=26% Similarity=0.450 Sum_probs=141.1
Q ss_pred hhhcCC--CcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCCCCeEeC---CCCCcccccCcCC-
Q 036119 3 KKQLFG--KKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQL---KELSDDDCLDFTR- 76 (839)
Q Consensus 3 ~~~l~~--k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~~~---~~l~~~~~~~~~~- 76 (839)
++.+.+ +++||||||||+. .+++. .++|++||||||++.++..++ ...|++ ++|+++||++++.
T Consensus 228 ~~~l~~~~~~~LLVLDdv~~~--~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~ 297 (591)
T 1z6t_A 228 RILMLRKHPRSLLILDDVWDS--WVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSL 297 (591)
T ss_dssp HHHHHHTCTTCEEEEEEECCH--HHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHH
T ss_pred HHHHccCCCCeEEEEeCCCCH--HHHHH-------hcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHH
Confidence 344444 7999999999874 34432 367899999999999887654 345665 4899999995432
Q ss_pred -----CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccc----cCCC------CCcchhc------
Q 036119 77 -----HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWN----LRDS------DILPALR------ 135 (839)
Q Consensus 77 -----~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~----~~~~------~~~~~l~------ 135 (839)
...+.+.+.+|+++|+|+|+|++.+|+.++++. ..|+..++..... +... .+...++
T Consensus 298 ~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L 375 (591)
T 1z6t_A 298 FVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375 (591)
T ss_dssp HHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTS
T ss_pred HhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhC
Confidence 223467899999999999999999999998863 4687766532111 1100 1111122
Q ss_pred ---hhhhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccC-CCcceeecHHHHH
Q 036119 136 ---LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSY-DASRFVMHDLIND 211 (839)
Q Consensus 136 ---~k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdlv~~ 211 (839)
.|.||.++|+||+|+.|+.+.++.+|.+. .+.+..++.+|+++++++.... ....|.||+++|+
T Consensus 376 ~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~ 443 (591)
T 1z6t_A 376 REDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVD 443 (591)
T ss_dssp CTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHH
T ss_pred CHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHH
Confidence 79999999999999999999999999532 2456788999999999986542 2357999999999
Q ss_pred HHHHHc
Q 036119 212 LARWAA 217 (839)
Q Consensus 212 la~~i~ 217 (839)
+++...
T Consensus 444 ~~~~~~ 449 (591)
T 1z6t_A 444 FLTEKN 449 (591)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 999774
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=170.69 Aligned_cols=133 Identities=17% Similarity=0.108 Sum_probs=94.0
Q ss_pred cccceeEeccCCCchhhhhhcC-CCCcceeeeccccccc-CccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 612 QSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLK-SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
++|+.|++++|......+..+. .++|++|++++|.+.+ .+|..+..+++|++|++++|......|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 3455555555543333333222 3667777777776655 4666778888899999998877766677777888899999
Q ss_pred cccccccccccccCcccccccccccccccCCccCCCC-CCC-CCcceEEecCCCCCC
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFP-TNLQSLDVHDLKISK 744 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~ 744 (839)
+++|...+..+..+..+++|+.|++++|++....+.. ..+ ++|++|++++|++.+
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 9888766655556788888999999988887766644 333 588999999888764
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-17 Score=172.40 Aligned_cols=255 Identities=13% Similarity=0.101 Sum_probs=161.5
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
++++|+.|++++|.+....+..+.++++|+.|++++|......+. ...+++|++|++++|.. +.++...+ ..+++|+
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~ 127 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWF-KPLSSLT 127 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHH-TTCTTCS
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHh-CCCccCC
Confidence 346899999999988544444789999999999999854443332 45689999999998864 44554422 5678899
Q ss_pred eEecccCCCCcCCCC---CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeE
Q 036119 542 CLAIRSCNSLVSFPE---VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLK 618 (839)
Q Consensus 542 ~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 618 (839)
+|++++|... .++. +..+++|++|++++|..+..++...+... ++|+.|++++|......+.....+
T Consensus 128 ~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l------- 197 (353)
T 2z80_A 128 FLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL--TFLEELEIDASDLQSYEPKSLKSI------- 197 (353)
T ss_dssp EEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC--CEEEEEEEEETTCCEECTTTTTTC-------
T ss_pred EEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCC--CCCCEEECCCCCcCccCHHHHhcc-------
Confidence 9999887544 4443 45667778887777754554433222211 245555555543322222222222
Q ss_pred eccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCC---CCCCCCcceEecccccc
Q 036119 619 IEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEE---GLPSTKLTELTIYDCEN 695 (839)
Q Consensus 619 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 695 (839)
++|++|++++|.+....+..+..+++|++|++++|......+.. ....+.++.++++++..
T Consensus 198 ----------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 198 ----------------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ----------------SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred ----------------ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 45555555555543222222334677777777777655432221 12245667777777654
Q ss_pred cc----cccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCcc
Q 036119 696 LK----ALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 696 l~----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 746 (839)
.+ .+|..+..+++|+.|++++|.+. .+|.. ..+++|++|++++|++.+..
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 33 46778888999999999999886 55543 57889999999999988654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=167.51 Aligned_cols=201 Identities=18% Similarity=0.121 Sum_probs=106.8
Q ss_pred ccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCccc-CCCCCCCCCcceE
Q 036119 611 PQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESF-PEEGLPSTKLTEL 688 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 688 (839)
+++|+.|++++|......+..+ ..++|++|++++|.+.+..|..+..+++|++|++++|.....+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3456666666554333222222 2356666666666665555556666666677777666533333 4555566666677
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCP 767 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 767 (839)
++++|...+..|..+..+++|++|++++|.+....+.. ..+++|++|++++|.+.+.. ...+..+++|+.|++++|..
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccccCEEECCCCcc
Confidence 77666655544555666666666666666665433322 45666666666666655322 11233344444444444211
Q ss_pred CCcCC--CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 768 DLVSP--PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 768 ~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
.-... ..-+++|+.|++++|...+..+..+..+++|+.|++++|+
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 10000 0013456666666665544333345566666666666664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-18 Score=182.23 Aligned_cols=198 Identities=16% Similarity=0.088 Sum_probs=113.3
Q ss_pred CCCcceeeecccccccCccccc--cCCCCCCeEEecCCCCCcccCCCCCCC-----CCcceEecccccccccccccCccc
Q 036119 634 NTSLEEISISVLENLKSLPADL--HNLHHLQKIWIFGCPNLESFPEEGLPS-----TKLTELTIYDCENLKALPNCMHNL 706 (839)
Q Consensus 634 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~l~~lp~~l~~l 706 (839)
.++|++|++++|.+.+.+|..+ ..+++|++|++++|...+. |..+..+ ++|++|++++|+..+..|..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4566666666666655555544 5566666666666654443 4333333 566666666665544444556666
Q ss_pred ccccccccccccCCccC---CCC--CCCCCcceEEecCCCCCC--ccccccCCCccccceEEEecCCCCCcC-CC--CCC
Q 036119 707 TSLLNLKISECPSVVSF---PED--GFPTNLQSLDVHDLKISK--PLLEWGSNRFTSLRRFTIWGGCPDLVS-PP--PFP 776 (839)
Q Consensus 707 ~~L~~L~l~~~~~~~~~---~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~--~~~ 776 (839)
++|++|++++|++.... +.. ..+++|++|++++|.+.+ .++...+..+++|+.|++++|...-.. .+ ..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 66666666666543321 111 345566666666666552 122222234556666666654222111 11 124
Q ss_pred cccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCCC
Q 036119 777 ASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPL 836 (839)
Q Consensus 777 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 836 (839)
++|+.|++++|... .+|..+. ++|+.|++++| +++.+|...-.++|++|++++++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTT
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCC
Confidence 67888888888654 6776654 78888888887 677776544446788888888763
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-17 Score=166.10 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=64.1
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|...+..|..+..+++|+.|++
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 44555555555554444444566667777777766554333334556667777777776655555666666667777777
Q ss_pred ccccCCccCCC-CCCCCCcceEEecCCCCC
Q 036119 715 SECPSVVSFPE-DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 715 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 743 (839)
++|.+....+. ...+++|++|++++|++.
T Consensus 209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 76666543222 145566666777666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-17 Score=171.88 Aligned_cols=208 Identities=9% Similarity=-0.044 Sum_probs=98.6
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecC
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFG 668 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 668 (839)
+|+.|++++|......+.....+++|+.|++++|......+ ....++|++|++++|.+.+. ...++|++|++++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~ 108 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAAN 108 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCC
Confidence 56666666654333222112223456666666654332222 23335666666666654321 1235666666666
Q ss_pred CCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCcc
Q 036119 669 CPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 669 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 746 (839)
|.+....+. .+++|++|++++|+..+..|..+..+++|+.|++++|.+....+.. ..+++|++|++++|.+.+.
T Consensus 109 n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp SCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-
Confidence 654433322 1345666666666554444445555666666666666554433322 2345666666666665532
Q ss_pred ccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCC
Q 036119 747 LEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 747 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 811 (839)
+. ...+++|+.|++++|.. ..++. .+++|+.|++++|... .+|..+..+++|+.|++++|
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l--~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 185 KG--QVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EC--CCCCTTCCEEECCSSCC--CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred cc--ccccccCCEEECCCCcC--CcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence 11 12244555555544311 11111 1234555555555332 34444444455555555554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-18 Score=177.37 Aligned_cols=243 Identities=16% Similarity=0.128 Sum_probs=126.2
Q ss_pred CCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCC-cCCchhhh----cccCCCCcceEEEeecCCcccccCCC--C
Q 036119 537 NSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHAL-ESLPEAWM----HNELPATLEHLEVSYCSNLALLSRNG--N 609 (839)
Q Consensus 537 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~--~ 609 (839)
.++|+.+++++|.. .+|.. .+..|+.|+++++..- ..++.... ...-.++|++|++++|......+... .
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQ-FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHH-HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc--ccHHH-HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 36678888887766 44421 1123666666655321 12333221 00001366677776665444443321 3
Q ss_pred cccccceeEeccCCCchhhhhhcC------CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcc--cCCC--C
Q 036119 610 LPQSLKYLKIEDCSKLESLAERLD------NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLES--FPEE--G 679 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~--~ 679 (839)
.+++|++|++++|..... +..+. .++|++|++++|++.+..|..+..+++|++|++++|...+. ++.. +
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 345566666666543322 21111 14555566655555555545555555566666655554332 1111 1
Q ss_pred CCCCCcceEecccccccc--ccc-ccCcccccccccccccccCCccCCC--CCCCCCcceEEecCCCCCCccccccCCCc
Q 036119 680 LPSTKLTELTIYDCENLK--ALP-NCMHNLTSLLNLKISECPSVVSFPE--DGFPTNLQSLDVHDLKISKPLLEWGSNRF 754 (839)
Q Consensus 680 ~~~~~L~~L~l~~~~~l~--~lp-~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 754 (839)
..+++|++|++++|.... .++ ..+..+++|++|++++|.+....|. ...+++|++|++++|.+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~----------- 266 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK----------- 266 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-----------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-----------
Confidence 445555555555554331 112 1223445555555555555443321 133455555555555544
Q ss_pred cccceEEEecCCCCCcCCCC-CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 755 TSLRRFTIWGGCPDLVSPPP-FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 755 ~~L~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
.+|. ++++|+.|++++|...+ +|. +..+++|+.|++++|+
T Consensus 267 ----------------~ip~~~~~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 ----------------QVPKGLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ----------------SCCSSCCSEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCT
T ss_pred ----------------hhhhhccCCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCC
Confidence 2222 22589999999996654 465 8889999999999983
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=164.45 Aligned_cols=225 Identities=16% Similarity=0.164 Sum_probs=155.9
Q ss_pred HHHHHHHhcCCCceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 283 WSVLQMLLNHLPRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 283 ~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
...+...+..+++|++|++++|. +..++ ..|+++++|++|++++|.+.+..| +.. +++|++|++++| .++
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~-----l~~L~~L~Ls~n-~l~ 93 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LES-----LSTLRTLDLNNN-YVQ 93 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETT-----CTTCCEEECCSS-EEE
T ss_pred hhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhh-----cCCCCEEECcCC-ccc
Confidence 45566778888999999999999 66554 789999999999999999866544 444 999999999996 565
Q ss_pred cCCCcCCCCccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceec
Q 036119 362 GTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQI 441 (839)
Q Consensus 362 ~~lp~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l 441 (839)
.+|. .++|++|++++|.--......+++|++|++++|....+..
T Consensus 94 -~l~~-~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~---------------------------------- 137 (317)
T 3o53_A 94 -ELLV-GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD---------------------------------- 137 (317)
T ss_dssp -EEEE-CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG----------------------------------
T ss_pred -cccC-CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc----------------------------------
Confidence 4442 3777888877776222223346677777777765322100
Q ss_pred ccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCcccccc-CCCCCccEEeecCCCCCcccCCCCCCCCccEEEec
Q 036119 442 SRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL-LTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIE 520 (839)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~ 520 (839)
..+..+ ++|+.|++++|.+....+..+ ..+++|++|++++|. ++.++....+++|+.|+++
T Consensus 138 ----------------~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 138 ----------------LDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLS 199 (317)
T ss_dssp ----------------BCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECC
T ss_pred ----------------hhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECC
Confidence 000011 578888998888865555555 478899999999885 4455555568889999998
Q ss_pred cCccccccchhhhhCCCCccceEecccCCCCcCCC-CCCCCCCccEEEEcCCCCC
Q 036119 521 ECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHAL 574 (839)
Q Consensus 521 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l 574 (839)
+|.. ..++..+ ..+++|+.|++++|... .+| .+..+++|+.|++++|+..
T Consensus 200 ~N~l-~~l~~~~--~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 200 SNKL-AFMGPEF--QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SSCC-CEECGGG--GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CCcC-Ccchhhh--cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 8864 4455443 45688888888887554 344 3455667777777777543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=156.41 Aligned_cols=200 Identities=17% Similarity=0.140 Sum_probs=104.9
Q ss_pred cccccceeEeccCCCchhhhhhc-CCCCcceeeecccc-cccCccccccCCCCCCeEEecC-CCCCcccCCCCCCCCCcc
Q 036119 610 LPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLE-NLKSLPADLHNLHHLQKIWIFG-CPNLESFPEEGLPSTKLT 686 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~ 686 (839)
++++|+.|++++|......+..+ ..++|++|++++|+ +....+..+..+++|++|++++ |......+..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 34456666666654322222122 23455555555554 3222223444555555555554 333322223344445555
Q ss_pred eEecccccccccccccCccccccc---ccccccccCCccCCCC--CCCCCcc-eEEecCCCCCCccccccCCCccccceE
Q 036119 687 ELTIYDCENLKALPNCMHNLTSLL---NLKISECPSVVSFPED--GFPTNLQ-SLDVHDLKISKPLLEWGSNRFTSLRRF 760 (839)
Q Consensus 687 ~L~l~~~~~l~~lp~~l~~l~~L~---~L~l~~~~~~~~~~~~--~~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~l 760 (839)
+|++++|+.. .+|. +..+++|+ .|++++|+.+..++.. ..+++|+ +|++++|.+.. ++...
T Consensus 109 ~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~---------- 175 (239)
T 2xwt_C 109 FLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYA---------- 175 (239)
T ss_dssp EEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTT----------
T ss_pred EEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhh----------
Confidence 5555555432 2443 44444444 5555555222222221 3344555 55555554431 21110
Q ss_pred EEecCCCCCcCCCCCCcccceeeecCCCCCCccc-cCCCCC-CccCeeeccCCCCccccCCCCCCcccceeeecCCCCC
Q 036119 761 TIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS-SIGENL-TSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPLI 837 (839)
Q Consensus 761 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~l 837 (839)
+ ..++|+.|++++|+.++.+| ..+..+ ++|+.|++++| .++.+|...+ ++|+.|+++++..|
T Consensus 176 -----------~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~-~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 -----------F--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGL-EHLKELIARNTWTL 239 (239)
T ss_dssp -----------T--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTC-TTCSEEECTTC---
T ss_pred -----------c--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHh-ccCceeeccCccCC
Confidence 0 11478999999996455554 456788 99999999997 7888887744 58999999998764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=176.60 Aligned_cols=209 Identities=10% Similarity=-0.037 Sum_probs=123.6
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecC
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFG 668 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 668 (839)
+|+.|++++|......+.....+++|+.|++++|......+ ....++|+.|++++|.+.+.. ..++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence 67777777775444333333344677777777776443333 334477777777777664322 236777777777
Q ss_pred CCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCcc
Q 036119 669 CPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 669 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 746 (839)
|.+....+. .+++|+.|++++|...+..|..+..+++|+.|++++|.+....|.. ..+++|++|++++|.+.+..
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 766544332 2457777777777766666666777777777777777776544443 24677777777777776542
Q ss_pred ccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 747 LEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 747 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
. ...+++|+.|++++|.. ..++. .+++|+.|++++|... .+|..+..+++|+.|++++|+
T Consensus 186 -~--~~~l~~L~~L~Ls~N~l--~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 186 -G--QVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -C--CCCCTTCCEEECCSSCC--CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred -c--cccCCCCCEEECCCCCC--CCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCC
Confidence 1 12356666666655421 12211 2345666666665433 355555555666666666553
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-16 Score=171.14 Aligned_cols=217 Identities=16% Similarity=0.174 Sum_probs=154.8
Q ss_pred hcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCC
Q 036119 290 LNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRL 368 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l 368 (839)
...+++|++|+|++|. +..+ |..|+.+++|++|+|++|.+.+..| +.. +++|++|++++| .++ .+|. .
T Consensus 30 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~-----l~~L~~L~Ls~N-~l~-~l~~-~ 98 (487)
T 3oja_A 30 RQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LES-----LSTLRTLDLNNN-YVQ-ELLV-G 98 (487)
T ss_dssp STTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTT-----CTTCCEEECCSS-EEE-EEEE-C
T ss_pred cccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--ccc-----CCCCCEEEecCC-cCC-CCCC-C
Confidence 3445589999999999 5555 5789999999999999999977665 555 999999999996 666 4443 3
Q ss_pred CCccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcc
Q 036119 369 LLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLI 448 (839)
Q Consensus 369 ~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 448 (839)
++|++|++++|.-.......+++|+.|++++|......+ .
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~-----------------------~----------------- 138 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD-----------------------L----------------- 138 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG-----------------------B-----------------
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCc-----------------------h-----------------
Confidence 778888888776222222346777777777765322100 0
Q ss_pred cccccccccCCCCCCcCCceEEEeccCCCCCccccccC-CCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccc
Q 036119 449 SLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALL-TLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALES 527 (839)
Q Consensus 449 ~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~ 527 (839)
.+..+ ++|+.|++++|.+.+..|..+. .+++|+.|++++|. +..++....+++|+.|++++|.. ..
T Consensus 139 ----------~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l-~~ 205 (487)
T 3oja_A 139 ----------DEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKL-AF 205 (487)
T ss_dssp ----------CGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCC-CE
T ss_pred ----------hhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCC-CC
Confidence 00001 5789999999988776777665 78999999999985 44556666789999999998874 44
Q ss_pred cchhhhhCCCCccceEecccCCCCcCCC-CCCCCCCccEEEEcCCCC
Q 036119 528 LPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHA 573 (839)
Q Consensus 528 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~ 573 (839)
++..+ ..+++|+.|++++|.... +| .+..+++|+.|++++|+.
T Consensus 206 ~~~~~--~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 206 MGPEF--QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECGGG--GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred CCHhH--cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 55444 456889999998876553 44 345667788888777754
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-15 Score=153.10 Aligned_cols=174 Identities=15% Similarity=0.099 Sum_probs=83.7
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
+++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 34444444444433333344455555555555554332222223444555555555554333223334455555555555
Q ss_pred cccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCC----CCCcccceeeecCCCCC
Q 036119 716 ECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPP----PFPASLTNLWISDMPDL 790 (839)
Q Consensus 716 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l 790 (839)
+|.+....+.. ..+++|++|++++|.+.+.. ...+..+++|+.|+++++. +..++ ..+++|+.|++++|...
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCc--CcEeChhHhccCCCcCEEECCCCcCC
Confidence 55544332222 34455555555555544321 1122334444444444321 11111 12346788888888665
Q ss_pred CccccCCCCCCccCeeeccCCC
Q 036119 791 ESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 791 ~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
+..+..+..+++|+.|++++||
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCHHHhccccCCCEEEecCCC
Confidence 4444446778888888888875
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=163.90 Aligned_cols=196 Identities=17% Similarity=0.126 Sum_probs=98.1
Q ss_pred cceeEeccCCCchhhhhhc---CCCCcceeeecccccccCcc----ccccCCCCCCeEEecCCCCCcccCCCCCCCCCcc
Q 036119 614 LKYLKIEDCSKLESLAERL---DNTSLEEISISVLENLKSLP----ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLT 686 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 686 (839)
|++|++++|......+..+ ..++|++|++++|.+.+..+ ..+..+++|++|++++|......+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 5555555554333333321 23445555555554443322 1223444555555555544433334444445555
Q ss_pred eEeccccccccc--c--cccCcccccccccccccccCCccCCC-----CCCCCCcceEEecCCCCCCccccccCCCcccc
Q 036119 687 ELTIYDCENLKA--L--PNCMHNLTSLLNLKISECPSVVSFPE-----DGFPTNLQSLDVHDLKISKPLLEWGSNRFTSL 757 (839)
Q Consensus 687 ~L~l~~~~~l~~--l--p~~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 757 (839)
+|++++|+..+. + +..+..+++|++|++++|.+. .++. ...+++|++|++++|.+.+..|..
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-------- 243 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-------- 243 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC--------
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhh--------
Confidence 555555543321 1 112234455555555555442 1111 012344555555555444332211
Q ss_pred ceEEEecCCCCCcCCCC--CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCC
Q 036119 758 RRFTIWGGCPDLVSPPP--FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 758 ~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
+.. .+++|+.|++++|... .+|..+. ++|+.|++++| +++.+|...-.++|+.|++++++
T Consensus 244 --------------~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 244 --------------APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp --------------CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred --------------HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 111 1357888888888655 6676553 78888888887 67776554444688888888876
Q ss_pred C
Q 036119 836 L 836 (839)
Q Consensus 836 ~ 836 (839)
.
T Consensus 306 l 306 (310)
T 4glp_A 306 F 306 (310)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-16 Score=156.79 Aligned_cols=199 Identities=18% Similarity=0.098 Sum_probs=105.6
Q ss_pred ccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 611 PQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
+++|++|++++|......+..+ ..++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 3455566665554332222122 235566666666655544444555666666666666655544445555566666666
Q ss_pred cccccccccccccCcccccccccccccccCCcc-CCCC-CCCCCcceEEecCCCCCCccccccCCCccccc----eEEEe
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVS-FPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLR----RFTIW 763 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~----~l~l~ 763 (839)
+++|...+..+..+..+++|++|++++|.+... +|.. ..+++|++|++++|.+.+..+. .+..+++|+ .++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-HhhhhhhccccceeeecC
Confidence 666654443333556666666666666655431 2322 4456666666666665543221 122233333 44554
Q ss_pred cCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 764 GGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 764 ~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
++... .++. ...+|+.|++++|...+..+..+..+++|+.|++++|+
T Consensus 186 ~n~l~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 186 LNPMN--FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSCCC--EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCccc--ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 43211 1111 12267888888886554444445778888888888764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=153.72 Aligned_cols=196 Identities=18% Similarity=0.048 Sum_probs=155.0
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
+++++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|+..+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998777778889999999999999877666667888999999999999877766778999999999999
Q ss_pred ccccCCccCCC-CCCCCCcceEEecCCCCCCc-cccccCCCccccceEEEecCCCCCcCCCC----CCcccc----eeee
Q 036119 715 SECPSVVSFPE-DGFPTNLQSLDVHDLKISKP-LLEWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASLT----NLWI 784 (839)
Q Consensus 715 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L~----~L~l 784 (839)
++|.+....+. ...+++|++|++++|.+.+. ++. .+..+++|+.|++++|.. ..++. .+.+|+ .|++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCC--CEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCC--CcCCHHHhhhhhhccccceeeec
Confidence 99998765442 36789999999999999863 233 457789999999998632 22221 123444 8999
Q ss_pred cCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCC--CcccceeeecCCC
Q 036119 785 SDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL--PKSLLQLHIYACP 835 (839)
Q Consensus 785 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~i~~c~ 835 (839)
++|.... ++.......+|+.|++++| +++.++...+ .++|+.|++++++
T Consensus 185 s~n~l~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 185 SLNPMNF-IQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCE-ECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccc-cCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 9997654 4444445568999999998 6888887533 4689999999654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-15 Score=151.40 Aligned_cols=171 Identities=15% Similarity=-0.002 Sum_probs=86.3
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++++.|++++|.+.+..+..+..+++|++|++++|.+.. ++.. ..+++|++|++++|. +..+|..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 345555555555544444455556666666666654432 2221 445556666666553 3345555555666666666
Q ss_pred ccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC----CCcccceeeecCCCC
Q 036119 715 SECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASLTNLWISDMPD 789 (839)
Q Consensus 715 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~ 789 (839)
++|.+....+.. ..+++|++|++++|.+.+.. ...+..+++|+.|++++|. +..++. .+++|+.|++++|..
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNN--LTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC--CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCc--CCccCHHHhcCcCCCCEEECCCCcC
Confidence 665554333222 44555666666666555322 1122333333333333321 111111 134566666666644
Q ss_pred CCccccCCCCCCccCeeeccCCC
Q 036119 790 LESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 790 l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
+.+|..+..+++|+.|++++||
T Consensus 185 -~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 185 -YTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCCCTTTTTTCCCSEEECCSCC
T ss_pred -CccChhhcccccCCeEEeCCCC
Confidence 3566666666677777777664
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=148.19 Aligned_cols=209 Identities=18% Similarity=0.149 Sum_probs=152.7
Q ss_pred CCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhh-hc-CCCCcceeeecc-ccc
Q 036119 571 CHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAE-RL-DNTSLEEISISV-LEN 647 (839)
Q Consensus 571 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-~~~~L~~L~l~~-~~~ 647 (839)
|..++.+|. +|++++.|+++++......+.....+++|+.|++++|..++.++. .+ ..++|++|++++ |.+
T Consensus 20 c~~l~~ip~------~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 20 CKDIQRIPS------LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp ECSCSSCCC------CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred ccCccccCC------CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 444677775 345899999999875443332344467899999999975666653 33 458999999999 787
Q ss_pred ccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcc---eEeccccccccccc-ccCccccccc-ccccccccCCcc
Q 036119 648 LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLT---ELTIYDCENLKALP-NCMHNLTSLL-NLKISECPSVVS 722 (839)
Q Consensus 648 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~lp-~~l~~l~~L~-~L~l~~~~~~~~ 722 (839)
.+..+..+..+++|++|++++|.... +|. +..+++|+ +|++++|+.+..+| ..+..+++|+ .|++++|.+. .
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~ 170 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-E
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-c
Confidence 76666778899999999999997654 776 77788888 99999994455555 4589999999 9999999987 5
Q ss_pred CCCC-CCCCCcceEEecCCC-CCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCC
Q 036119 723 FPED-GFPTNLQSLDVHDLK-ISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENL 800 (839)
Q Consensus 723 ~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 800 (839)
+|.. ...++|+.|++++|+ +.+ ++...+..+ .++|+.|++++|... .+|.. .+
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~-i~~~~~~~l---------------------~~~L~~L~l~~N~l~-~l~~~--~~ 225 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTV-IDKDAFGGV---------------------YSGPSLLDVSQTSVT-ALPSK--GL 225 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCE-ECTTTTTTC---------------------SBCCSEEECTTCCCC-CCCCT--TC
T ss_pred cCHhhcCCCCCCEEEcCCCCCccc-CCHHHhhcc---------------------ccCCcEEECCCCccc-cCChh--Hh
Confidence 5543 344799999999996 654 322222222 136788888888654 55543 68
Q ss_pred CccCeeeccCCCC
Q 036119 801 TSLKTLRLSDCPK 813 (839)
Q Consensus 801 ~~L~~L~l~~c~~ 813 (839)
++|+.|+++++..
T Consensus 226 ~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 226 EHLKELIARNTWT 238 (239)
T ss_dssp TTCSEEECTTC--
T ss_pred ccCceeeccCccC
Confidence 8999999998754
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=151.67 Aligned_cols=184 Identities=13% Similarity=-0.021 Sum_probs=122.6
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|... .++.....++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 63 ~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 63 PNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 45666666666432 23433445778888888887776666667778888888888887665555556777888888888
Q ss_pred cccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCc
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 770 (839)
+|...+..+..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.+..+ ..+..+++|+.+++++|.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~---- 216 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNP---- 216 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC----
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCC----
Confidence 88655444445677888888888888776444433 567788888888888776443 234566777777776641
Q ss_pred CCCCCCcccceeeecCCCCCCccccCCCCCCc
Q 036119 771 SPPPFPASLTNLWISDMPDLESISSIGENLTS 802 (839)
Q Consensus 771 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 802 (839)
+...+++|+.|+++.|...+.+|..++.++.
T Consensus 217 -~~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 217 -WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -BCCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -ccccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 1112346777777777777777766655544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=146.65 Aligned_cols=176 Identities=17% Similarity=0.089 Sum_probs=77.0
Q ss_pred CccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCccee
Q 036119 562 QLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEEI 640 (839)
Q Consensus 562 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L 640 (839)
+.+.++++++ .+..+|.. +|++++.|+++++......+.....+++|++|++++|......+..+ ..++|++|
T Consensus 17 ~~~~l~~~~~-~l~~ip~~-----~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSN-----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTS-CCSSCCSC-----CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccCC-CCCccCCC-----CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 4556666655 34445432 23456666666554322222122223455555555543221111111 12455555
Q ss_pred eecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCC
Q 036119 641 SISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 641 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 55555544433333444555555555555444333333444455555555554333222222444555555555555443
Q ss_pred ccCCCC-CCCCCcceEEecCCCCC
Q 036119 721 VSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 721 ~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
...+.. ..+++|++|++++|++.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EeChhHhccCCCcCEEECCCCcCC
Confidence 322221 33445555555555444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=154.88 Aligned_cols=195 Identities=13% Similarity=0.090 Sum_probs=143.6
Q ss_pred CcceEEEeecCCcccccCCC--CcccccceeEeccCCCchhhh-----hhcCCCCcceeeecccccccCccccccCCCCC
Q 036119 589 TLEHLEVSYCSNLALLSRNG--NLPQSLKYLKIEDCSKLESLA-----ERLDNTSLEEISISVLENLKSLPADLHNLHHL 661 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 661 (839)
+|++|++++|......+... ..+++|++|++++|......+ .....++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 57777777776554444432 345678889988887554321 11245899999999999988888889999999
Q ss_pred CeEEecCCCCCcc--c--CCCCCCCCCcceEecccccccccccc----cCcccccccccccccccCCccCCCC-CC---C
Q 036119 662 QKIWIFGCPNLES--F--PEEGLPSTKLTELTIYDCENLKALPN----CMHNLTSLLNLKISECPSVVSFPED-GF---P 729 (839)
Q Consensus 662 ~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~~~~~~~~~~~-~~---~ 729 (839)
++|++++|+..+. + +.....+++|++|++++|.. ..++. .+..+++|++|++++|.+....|.. .. +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999986642 2 23346789999999999965 44443 2477899999999999998775543 23 4
Q ss_pred CCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeecc
Q 036119 730 TNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLS 809 (839)
Q Consensus 730 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 809 (839)
++|++|++++|.+.. +|.. ++++|+.|++++|... .+|. +..+++|+.|+++
T Consensus 251 ~~L~~L~Ls~N~l~~-lp~~-------------------------~~~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ-VPKG-------------------------LPAKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLD 302 (310)
T ss_dssp TTCCCEECCSSCCCS-CCSC-------------------------CCSCCSCEECCSCCCC-SCCC-TTSCCCCSCEECS
T ss_pred CcCCEEECCCCCCCc-hhhh-------------------------hcCCCCEEECCCCcCC-CCch-hhhCCCccEEECc
Confidence 799999999999873 3321 1247889999999665 4443 5778999999999
Q ss_pred CCC
Q 036119 810 DCP 812 (839)
Q Consensus 810 ~c~ 812 (839)
+|+
T Consensus 303 ~N~ 305 (310)
T 4glp_A 303 GNP 305 (310)
T ss_dssp STT
T ss_pred CCC
Confidence 984
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-14 Score=144.00 Aligned_cols=194 Identities=15% Similarity=0.089 Sum_probs=132.5
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|.+.+|. +..++.....++|++|++++|.+.+ + ..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 467788877764 3344444456899999999998865 3 367889999999999997776555567788999999999
Q ss_pred cccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCc
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 770 (839)
+|...+..+..+..+++|++|++++|.+....+.. ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|. +.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~--l~ 194 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQ--LK 194 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC--CS
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCc--CC
Confidence 99776655666888999999999999876544443 578899999999998875433 234556666666666542 11
Q ss_pred CCCC----CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccC
Q 036119 771 SPPP----FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFS 818 (839)
Q Consensus 771 ~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 818 (839)
.++. .+++|+.|++++|+.. +.+++|+.|+++.|..-..+|
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCccc
Confidence 2211 2445666666666433 234456666666553333333
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-14 Score=143.81 Aligned_cols=197 Identities=16% Similarity=0.042 Sum_probs=89.1
Q ss_pred CCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcc
Q 036119 559 LPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLE 638 (839)
Q Consensus 559 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 638 (839)
.+++++.+++.++ .+..+|... |++++.|++++|......+.....+++|+.|++++
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip~~~-----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~----------------- 64 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALPPDL-----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR----------------- 64 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCCSCC-----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-----------------
T ss_pred ccCCccEEECCCC-CCCcCCCCC-----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-----------------
Confidence 3446777777665 345554322 23455555555543222222122234455555554
Q ss_pred eeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccccccc
Q 036119 639 EISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECP 718 (839)
Q Consensus 639 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 718 (839)
|.+.+..+ ...+++|++|++++|.+. .+|..+..+++|++|++++|+..+..|..+..+++|++|++++|.
T Consensus 65 ------n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 65 ------AELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ------SCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred ------CccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 44432211 134445555555554332 344444444455555555544333223344445555555555554
Q ss_pred CCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCC
Q 036119 719 SVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDL 790 (839)
Q Consensus 719 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l 790 (839)
+....+.. ..+++|+.|++++|++.+ ++...+..+++|+.|++++|. +..+|. -..+|+.|++++|+..
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~--l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENS--LYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCc--CCccChhhcccccCCeEEeCCCCcc
Confidence 43222221 234455555555554443 222223444555555554432 122222 1236888888888753
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=141.33 Aligned_cols=110 Identities=13% Similarity=-0.028 Sum_probs=57.4
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 34555555555555444445555556666666655554444444455555666666555544333344555555666666
Q ss_pred ccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 715 SECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 715 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
++|.+....+.. ..+++|++|++++|.+.+
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 655554322222 345556666666555543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=148.51 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=149.2
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+++|+.|++.+|. +..++.....++|+.|++++|.+.+..+ +..+++|++|++++|.... ++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 3579999999985 3445555556999999999998866443 8899999999999997553 44 5777899999999
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCc
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 770 (839)
++|.... ++. +..+++|++|++++|.+.. ++....+++|++|++++|.+.+..+ +..+++|+.|++++|.. .
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l--~ 186 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKI--S 186 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC--C
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCc-CccccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCcc--C
Confidence 9997544 554 8999999999999998864 4445678999999999999886433 57889999999988532 2
Q ss_pred CCCC--CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 771 SPPP--FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 771 ~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
.++. .+++|+.|++++|..... + .+..+++|+.|++++| .++..|.
T Consensus 187 ~~~~l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 187 DISPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred cChhhcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCC-eeecCCe
Confidence 3322 456899999999976544 3 2678999999999998 5566543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=148.19 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=145.5
Q ss_pred CCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEec
Q 036119 588 ATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIF 667 (839)
Q Consensus 588 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 667 (839)
++|+.|++.+|. +..++. ...+++|+.|++++|.. ..++.....++|+.|++++|.+.+ ++ .+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~-i~~l~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCC-ccCchh-hhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECC
Confidence 379999999885 444443 33457899999999854 344445556899999999999765 34 68899999999999
Q ss_pred CCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccc
Q 036119 668 GCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 668 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 747 (839)
+|.... ++. +..+++|++|++++|.... ++. +..+++|+.|++++|.+.. ++....+++|++|++++|.+.+..+
T Consensus 116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 116 STQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp TSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-ChhhcCCCCCCEEECCCCccCcChh
Confidence 997654 443 7788999999999996544 544 8899999999999998764 4446678999999999999986443
Q ss_pred cccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCC
Q 036119 748 EWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDL 790 (839)
Q Consensus 748 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 790 (839)
+..+++|+.|++++|...-......+++|+.|++++|+..
T Consensus 191 ---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 191 ---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred ---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 5788999999999864332211224678999999999763
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=145.85 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=101.6
Q ss_pred ccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCC
Q 036119 384 VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPEL 463 (839)
Q Consensus 384 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 463 (839)
..+..+++|++|++++|....++.... .....+..+++.++..+..+.. ..+..+
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~--------------------~~~~~l~~l~l~~~~~i~~l~~-----~~f~~~ 152 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHK--------------------IHSLQKVLLDIQDNINIHTIER-----NSFVGL 152 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTT--------------------CCBSSCEEEEEESCTTCCEECT-----TSSTTS
T ss_pred hhhhhccccccccccccccccCCchhh--------------------cccchhhhhhhccccccccccc-----cchhhc
Confidence 456777888888888776443322211 1122233344443333333222 122233
Q ss_pred cCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCC--CCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 464 PCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQA--ALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 464 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+..++.|++++|.+ ..++.......+|+.+.+.+++.++.+|.. ..+++|+.|++++|. ++.+|. ..+.+|+
T Consensus 153 ~~~l~~L~L~~N~i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~----~~~~~L~ 226 (350)
T 4ay9_X 153 SFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS----YGLENLK 226 (350)
T ss_dssp BSSCEEEECCSSCC-CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS----SSCTTCC
T ss_pred chhhhhhccccccc-cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh----hhhccch
Confidence 35788889988887 567666667778899999887788888763 457888888888885 566654 3457788
Q ss_pred eEecccCCCCcCCCCCCCCCCccEEEEcC
Q 036119 542 CLAIRSCNSLVSFPEVALPSQLRTIIIGG 570 (839)
Q Consensus 542 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 570 (839)
.|.+.++..++.+|....+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 88888888888888777777888887754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=138.07 Aligned_cols=171 Identities=17% Similarity=0.030 Sum_probs=123.7
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
+.+.++++++.+. .+|..+. ++++.|++++|......+..+..+++|++|++++|...+..|..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666665553 4555543 689999999998887777778889999999999998777667778999999999999
Q ss_pred cccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC----CCcccceeeecCCCCC
Q 036119 716 ECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASLTNLWISDMPDL 790 (839)
Q Consensus 716 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~l 790 (839)
+|.+....+.. ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|. +..++. .+++|+.|++++|...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99987554443 678999999999999885433 234567777777777642 223222 2456777777777665
Q ss_pred CccccCCCCCCccCeeeccCCC
Q 036119 791 ESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 791 ~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
...+..+..+++|+.|++++|+
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHHHHhCCCCCCEEEeeCCc
Confidence 5545456667777777777763
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-15 Score=157.33 Aligned_cols=247 Identities=13% Similarity=0.119 Sum_probs=141.6
Q ss_pred CceEEEeccCCCCCccccccCCC--CCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccc-cchhhhhCCCCccce
Q 036119 466 RLQFLELSCCEGLTRLPQALLTL--SSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALES-LPEAWMQNSNSSLEC 542 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~ 542 (839)
.++.++++++.+. +..+..+ ++++.|++.+|......+....+++|++|++++|..... ++..+ ..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCE
Confidence 4677777776553 3445555 778888888776555555555678888888888763322 33332 55678888
Q ss_pred EecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcC--CchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEe
Q 036119 543 LAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALES--LPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKI 619 (839)
Q Consensus 543 L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 619 (839)
|++++|......+ .+..+++|++|++++|..+.. ++.... .+++|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~---------------------------~~~~L~~L~l 175 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS---------------------------SCSRLDELNL 175 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH---------------------------HCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh---------------------------cCCCCCEEcC
Confidence 8888775432222 223456777777777643332 221111 1234555555
Q ss_pred ccCCCchh--hhhh-cCCC-Ccceeeecccc--cc-cCccccccCCCCCCeEEecCCC-CCcccCCCCCCCCCcceEecc
Q 036119 620 EDCSKLES--LAER-LDNT-SLEEISISVLE--NL-KSLPADLHNLHHLQKIWIFGCP-NLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 620 ~~~~~l~~--~~~~-~~~~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|..+.. ++.. ...+ +|++|++++|. +. +.+|..+..+++|++|++++|. .....+..+..+++|++|+++
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 55522221 2221 1234 66666666663 32 3345555667778888887776 334455556667778888887
Q ss_pred cccccc-cccccCcccccccccccccccCCccCCCC--CCC-CCcceEEecCCCCCCccccc
Q 036119 692 DCENLK-ALPNCMHNLTSLLNLKISECPSVVSFPED--GFP-TNLQSLDVHDLKISKPLLEW 749 (839)
Q Consensus 692 ~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~-~~L~~L~l~~~~~~~~~~~~ 749 (839)
+|.... .....+.++++|+.|++++| ++.. ..+ .+++.|++++|.+++..+.+
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 775221 11124667778888888877 2221 111 34667777888777665544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-16 Score=162.02 Aligned_cols=240 Identities=16% Similarity=0.133 Sum_probs=161.1
Q ss_pred CCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccC-ccccccCCCCCCeEEe
Q 036119 588 ATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKS-LPADLHNLHHLQKIWI 666 (839)
Q Consensus 588 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 666 (839)
..++.++++++........ ....++++.|++.++......+.....++|++|++++|.+.+. ++..+..+++|++|++
T Consensus 47 ~~~~~l~l~~~~~~~~~~~-~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDVTG-RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TTSSEEECTTCBCCHHHHH-HHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hhheeeccccccCCHHHHH-hhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4577888876543211100 0112578899988886555555555668999999999987655 7777888999999999
Q ss_pred cCCCCCcccCCCCCCCCCcceEecccccccc--cccccCcccccccccccccc-cCCcc-CCC-CCCCC-CcceEEecCC
Q 036119 667 FGCPNLESFPEEGLPSTKLTELTIYDCENLK--ALPNCMHNLTSLLNLKISEC-PSVVS-FPE-DGFPT-NLQSLDVHDL 740 (839)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~-~~~~~-~~~-~~~~~-~L~~L~l~~~ 740 (839)
++|......+..+..+++|++|++++|..++ .++..+.++++|++|++++| .+... ++. ...++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9997766666667778899999999995444 36777888999999999999 55432 222 14567 9999999999
Q ss_pred C--CC-CccccccCCCccccceEEEecCC-CCCcCCCC--CCcccceeeecCCCCCC-ccccCCCCCCccCeeeccCCCC
Q 036119 741 K--IS-KPLLEWGSNRFTSLRRFTIWGGC-PDLVSPPP--FPASLTNLWISDMPDLE-SISSIGENLTSLKTLRLSDCPK 813 (839)
Q Consensus 741 ~--~~-~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~--~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~ 813 (839)
. +. +.++. ....+++|+.|+++++. .....+.. ..++|+.|++++|.... .....+..+++|+.|++++|
T Consensus 206 ~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-- 282 (336)
T 2ast_B 206 RKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-- 282 (336)
T ss_dssp GGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--
T ss_pred cccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--
Confidence 4 44 22222 23567889999998753 11111111 34689999999886222 11124567889999999988
Q ss_pred ccccCCCC---CCcccceeeecCC
Q 036119 814 LKYFSEQG---LPKSLLQLHIYAC 834 (839)
Q Consensus 814 l~~l~~~~---~~~sL~~L~i~~c 834 (839)
++..+ +..+++.|++++|
T Consensus 283 ---i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 283 ---VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp ---SCTTCHHHHHHHSTTSEESCC
T ss_pred ---cCHHHHHHHHhhCcceEEecc
Confidence 33332 2345777777554
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=142.25 Aligned_cols=228 Identities=17% Similarity=0.138 Sum_probs=111.9
Q ss_pred CCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCC-CCcccccceeEeccCCCchhh
Q 036119 550 SLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRN-GNLPQSLKYLKIEDCSKLESL 628 (839)
Q Consensus 550 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~ 628 (839)
.++.+|.. .++++++|+++++ .++.++...+... ++|++|++++|...+.++.. +..++++.++...++..+..+
T Consensus 20 ~Lt~iP~~-l~~~l~~L~Ls~N-~i~~i~~~~f~~l--~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 20 KVTEIPSD-LPRNAIELRFVLT-KLRVIQKGAFSGF--GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TCCSCCTT-CCTTCSEEEEESC-CCSEECTTSSTTC--TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCccCcC-cCCCCCEEEccCC-cCCCcCHHHHcCC--CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 45566642 3457788888776 3566665544332 35666666666555444321 112233444333333333333
Q ss_pred -hhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC-CCCCC-CCcceEecccccccccccccCc
Q 036119 629 -AERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE-EGLPS-TKLTELTIYDCENLKALPNCMH 704 (839)
Q Consensus 629 -~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~l~~lp~~l~ 704 (839)
+..+. .++|++|++++|++....+..+....++..|++.++..+..++. .+..+ ..++.|++++|. +..+|....
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f 174 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAF 174 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSS
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhc
Confidence 22222 25555555555555443333333444455555554444434333 12222 245555555553 233444444
Q ss_pred ccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC-CCcccce
Q 036119 705 NLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP-FPASLTN 781 (839)
Q Consensus 705 ~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~L~~ 781 (839)
..++|+++++.+|..++.+|.. ..+++|++|++++|++.. +|. .+.+|+.
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~---------------------------lp~~~~~~L~~ 227 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS---------------------------LPSYGLENLKK 227 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC---------------------------CCSSSCTTCCE
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc---------------------------cChhhhccchH
Confidence 4455555555544444444432 344555555555555443 222 2345666
Q ss_pred eeecCCCCCCccccCCCCCCccCeeeccC
Q 036119 782 LWISDMPDLESISSIGENLTSLKTLRLSD 810 (839)
Q Consensus 782 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 810 (839)
|.+.++..++.+| .+.++++|+.+++++
T Consensus 228 L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 6666666666666 355666666666654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-15 Score=164.67 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCcceeeecccccc----cCccccccCCCCCCeEEecCCCCCcc----cCCCC--CCCCCcceEecccccccc----ccc
Q 036119 635 TSLEEISISVLENL----KSLPADLHNLHHLQKIWIFGCPNLES----FPEEG--LPSTKLTELTIYDCENLK----ALP 700 (839)
Q Consensus 635 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~--~~~~~L~~L~l~~~~~l~----~lp 700 (839)
++|+.|++++|.+. ..+|..+..+++|++|++++|.+... ++..+ ..+++|++|++++|.... .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 33444444444432 33444555666666666666655433 23322 225566666666665444 355
Q ss_pred ccC-cccccccccccccccCCc
Q 036119 701 NCM-HNLTSLLNLKISECPSVV 721 (839)
Q Consensus 701 ~~l-~~l~~L~~L~l~~~~~~~ 721 (839)
..+ .++++|+.|++++|++..
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhcCCCceEEEccCCcCCc
Confidence 554 445666666666666543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-13 Score=147.66 Aligned_cols=178 Identities=21% Similarity=0.198 Sum_probs=138.9
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+++.|++++|.. ..+|..+ .++|+.|++++|.+. .+| ..+++|++|++++|.+.. +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l-~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNL-PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCC-CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCC-CccCHhH-cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 789999998864 4466544 378999999999887 576 468999999999997665 776 544 999999999
Q ss_pred ccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 772 (839)
|+..+ +|. .+++|+.|++++|.+.. +|. .+++|++|++++|.+.+ +|.+ . ++|+.|++++| .+..+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~l--~--~~L~~L~Ls~N--~L~~l 195 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPEL--P--ESLEALDVSTN--LLESL 195 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCC--C--TTCCEEECCSS--CCSSC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cchh--h--CCCCEEECcCC--CCCch
Confidence 97555 776 68999999999998865 665 67899999999999887 5442 2 89999999886 34466
Q ss_pred CCCCccc-------ceeeecCCCCCCccccCCCCCCccCeeeccCCCCcc
Q 036119 773 PPFPASL-------TNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLK 815 (839)
Q Consensus 773 ~~~~~~L-------~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 815 (839)
|.++.+| +.|++++|.. +.+|..+..+++|+.|++++|+--.
T Consensus 196 p~~~~~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 196 PAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCCC--------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred hhHHHhhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCC
Confidence 6566678 9999999965 4688878779999999999985433
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-13 Score=128.96 Aligned_cols=167 Identities=12% Similarity=-0.018 Sum_probs=80.8
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
++++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|...+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 33444444444333333334445555555555554432222233444555555555554333222234455555555555
Q ss_pred cccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccc
Q 036119 716 ECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS 794 (839)
Q Consensus 716 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 794 (839)
+|.+....+.. ..+++|++|++++|.+.+.. ...+..+++|+.+++++|- +...+++|+.|+++.|...+.+|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~-----~~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNP-----WDCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCC-----BCCCTTTTHHHHHHHHHCTTTBB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCC-----eecCCCCHHHHHHHHHhCCceee
Confidence 55444322221 33455555555555544322 1123344445555444431 11123468888888888888888
Q ss_pred cCCCCCCccCeeeccCCC
Q 036119 795 SIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 795 ~~~~~l~~L~~L~l~~c~ 812 (839)
..++.++. ++..|.
T Consensus 183 ~~~~~l~~----~~~~C~ 196 (208)
T 2o6s_A 183 NSAGSVAP----DSAKCS 196 (208)
T ss_dssp CTTSSBCT----TCSBBT
T ss_pred ccCccccC----Cccccc
Confidence 77766655 455553
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-13 Score=147.76 Aligned_cols=184 Identities=21% Similarity=0.196 Sum_probs=134.7
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecC
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFG 668 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 668 (839)
+++.|++++|. ++.++. .++++|+.|++++|... .+| ...++|+.|++++|.+.+ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~--~l~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPD--NLPPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCS--CCCTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCH--hHcCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 78899998875 444554 23478999999988644 566 345889999999998876 666 544 899999999
Q ss_pred CCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCcccc
Q 036119 669 CPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLE 748 (839)
Q Consensus 669 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 748 (839)
|.+.. +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+.. +|. ..++|+.|++++|.+.. +|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~~~L~~L~Ls~N~L~~-lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LPESLEALDVSTNLLES-LPA 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSS-CCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hhCCCCEEECcCCCCCc-hhh
Confidence 97655 666 56799999999987544 776 57899999999998765 666 33899999999998874 444
Q ss_pred ccCCCcccc-------ceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCC
Q 036119 749 WGSNRFTSL-------RRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENL 800 (839)
Q Consensus 749 ~~~~~l~~L-------~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l 800 (839)
+ .. +| +.|++++|. +..+|. .+++|+.|++++|+..+.+|..+..+
T Consensus 198 ~--~~--~L~~~~~~L~~L~Ls~N~--l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 V--PV--RNHHSEETEIFFRCRENR--ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C--C----------CCEEEECCSSC--CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred H--HH--hhhcccccceEEecCCCc--ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 2 11 66 889998853 334554 35689999999998888777665443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=128.18 Aligned_cols=128 Identities=15% Similarity=0.066 Sum_probs=66.8
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|++|++++| .+..++.....++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 66 ~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 66 HNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp TTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred CCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 34555555555 22333322333555555555555555445555556666666666665554444445555566666666
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKI 742 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 742 (839)
+|+.++.+| .+..+++|+.|++++|++.. ++....+++|++|++++|++
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC--
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCccc
Confidence 665444454 45556666666666665532 33334455566666666554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-13 Score=126.75 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=105.1
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|... .++.....++|++|++++|.+. .+ ..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 46777777776433 4444445589999999999553 23 367889999999999998877778888889999999999
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
+|......|..+..+++|++|++++|+.+..++....+++|++|++++|++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence 99887777888899999999999999856667766778999999999998875
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=134.22 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=46.3
Q ss_pred CCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 292 HLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 292 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
.+++|++|++++|. +..+|. +..+++|++|++++|.+.+..| +.. +++|++|++++| .+.
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~-----l~~L~~L~l~~n-~l~ 103 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LAN-----LKNLGWLFLDEN-KVK 103 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSS-CCC
T ss_pred hcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCccCCCcc--ccc-----CCCCCEEECCCC-cCC
Confidence 45678889999888 777764 8888899999999998865433 444 888888888886 454
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=134.14 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=112.2
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|. +..++.....++|+.|++++|++.+..+ +..+++|++|++++|.... ++. +..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECC
Confidence 567788887764 3334444445777777777777765433 6677777777777775443 332 5666777777777
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVS 771 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 771 (839)
+|.... + +.+..+++|+.|++++|.+.. ++....+++|++|++++|.+.+..+ ...
T Consensus 121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~---l~~------------------ 176 (291)
T 1h6t_A 121 HNGISD-I-NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP---LAG------------------ 176 (291)
T ss_dssp TSCCCC-C-GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG---GTT------------------
T ss_pred CCcCCC-C-hhhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCccccchh---hcC------------------
Confidence 775433 3 346677777777777776653 3444566777777777777665322 111
Q ss_pred CCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 772 PPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 772 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
+++|+.|++++|.. +.++ .+..+++|+.|++++| .+...+.
T Consensus 177 ----l~~L~~L~L~~N~i-~~l~-~l~~l~~L~~L~l~~n-~i~~~~~ 217 (291)
T 1h6t_A 177 ----LTKLQNLYLSKNHI-SDLR-ALAGLKNLDVLELFSQ-ECLNKPI 217 (291)
T ss_dssp ----CTTCCEEECCSSCC-CBCG-GGTTCTTCSEEEEEEE-EEECCCE
T ss_pred ----CCccCEEECCCCcC-CCCh-hhccCCCCCEEECcCC-cccCCcc
Confidence 34688888888855 4455 3778999999999998 4555443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-14 Score=153.42 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=78.5
Q ss_pred CCcceeeecccccc-cCcc---ccccCCCCCCeEEecCCCCCc-----ccCCCCCCCCCcceEeccccccc----ccccc
Q 036119 635 TSLEEISISVLENL-KSLP---ADLHNLHHLQKIWIFGCPNLE-----SFPEEGLPSTKLTELTIYDCENL----KALPN 701 (839)
Q Consensus 635 ~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~l----~~lp~ 701 (839)
++|++|++++|++. ..++ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|... ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 67888888888776 3344 355677888888888886652 23335667788888888888764 56777
Q ss_pred cCcccccccccccccccCCcc----CCCC---CCCCCcceEEecCCCCCC
Q 036119 702 CMHNLTSLLNLKISECPSVVS----FPED---GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 702 ~l~~l~~L~~L~l~~~~~~~~----~~~~---~~~~~L~~L~l~~~~~~~ 744 (839)
.+..+++|++|++++|.+... ++.. +.+++|++|++++|.+.+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 788888888888888877543 2221 236788888888888775
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-14 Score=149.54 Aligned_cols=109 Identities=6% Similarity=-0.129 Sum_probs=57.9
Q ss_pred CcceeeecccccccCcccc----ccCC-CCCCeEEecCCCCCcc----cCCCCCC-CCCcceEecccccccccc----cc
Q 036119 636 SLEEISISVLENLKSLPAD----LHNL-HHLQKIWIFGCPNLES----FPEEGLP-STKLTELTIYDCENLKAL----PN 701 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~l~~l----p~ 701 (839)
+|++|++++|.+.+..+.. +..+ ++|++|++++|.+... ++..+.. .++|++|++++|+..... ..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 6666666666665544432 2334 4677777777654431 2222222 236777777776543321 23
Q ss_pred cCcccccccccccccccCCccC-------C-CCCCCCCcceEEecCCCCCC
Q 036119 702 CMHNLTSLLNLKISECPSVVSF-------P-EDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 702 ~l~~l~~L~~L~l~~~~~~~~~-------~-~~~~~~~L~~L~l~~~~~~~ 744 (839)
.+..+++|+.|++++|.+.... + ....+++|++|++++|++..
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3455666777777776622111 1 11345667777777776653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-14 Score=151.08 Aligned_cols=225 Identities=11% Similarity=0.016 Sum_probs=135.5
Q ss_pred CCCcceEEEeecCCccccc----CC-CCcccccceeEeccCCCchhhhhhcCC------CCcceeeecccccccCcccc-
Q 036119 587 PATLEHLEVSYCSNLALLS----RN-GNLPQSLKYLKIEDCSKLESLAERLDN------TSLEEISISVLENLKSLPAD- 654 (839)
Q Consensus 587 ~~~L~~L~l~~c~~l~~~~----~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~- 654 (839)
+.+|++|++++|....... .. ...+.+|++|++++|......+..+.. ++|++|++++|.+.+..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3568999998886332221 11 122237899999888654433322221 78999999998887666553
Q ss_pred ---ccCC-CCCCeEEecCCCCCcccCCC----CCC-CCCcceEecccccccc----cccccCcccc-cccccccccccCC
Q 036119 655 ---LHNL-HHLQKIWIFGCPNLESFPEE----GLP-STKLTELTIYDCENLK----ALPNCMHNLT-SLLNLKISECPSV 720 (839)
Q Consensus 655 ---~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~l~----~lp~~l~~l~-~L~~L~l~~~~~~ 720 (839)
+..+ ++|++|++++|.+....+.. +.. .++|++|++++|.... .++..+..++ +|++|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3344 78999999988765433322 222 2589999999887653 3444555565 8899999988876
Q ss_pred ccCCCC-----CCC-CCcceEEecCCCCCCcc----ccccCCCccccceEEEecCCCCCcC------CCCCCcccceeee
Q 036119 721 VSFPED-----GFP-TNLQSLDVHDLKISKPL----LEWGSNRFTSLRRFTIWGGCPDLVS------PPPFPASLTNLWI 784 (839)
Q Consensus 721 ~~~~~~-----~~~-~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~------~~~~~~~L~~L~l 784 (839)
...+.. ... ++|++|++++|.+.... +.......++|+.|++++|...... .....++|+.|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 543311 123 58999999998876521 1111111346777777765322211 1123456777777
Q ss_pred cCCCC-------CCccccCCCCCCccCeeeccCC
Q 036119 785 SDMPD-------LESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 785 ~~~~~-------l~~~~~~~~~l~~L~~L~l~~c 811 (839)
++|.. ...++..+..+++|+.|++++|
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 77752 1223344556677777777776
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=147.40 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=135.4
Q ss_pred CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccc
Q 036119 633 DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNL 712 (839)
Q Consensus 633 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 712 (839)
..++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+....+ +..+++|+.|+|++|... .+| .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEE
Confidence 44789999999998754 44 57889999999999997665444 778899999999999654 455 68999999999
Q ss_pred ccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCc
Q 036119 713 KISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLES 792 (839)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 792 (839)
++++|.+.. ++....+++|+.|++++|.+.+. + .+..+++|+.|++++|...-......+++|+.|++++|....
T Consensus 115 ~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 115 SLEHNGISD-INGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp ECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-G--GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-
T ss_pred EecCCCCCC-CccccCCCccCEEECCCCccCCc-h--hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-
Confidence 999998864 55557789999999999999875 2 357889999999988633222112246789999999996644
Q ss_pred cccCCCCCCccCeeeccCCCCccccCC
Q 036119 793 ISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 793 ~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
++ .+..+++|+.|++++| .+...|.
T Consensus 190 l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred Ch-HHccCCCCCEEEccCC-cCcCCcc
Confidence 44 5778999999999998 4555543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=120.72 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=77.1
Q ss_pred ceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccc
Q 036119 615 KYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694 (839)
Q Consensus 615 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 694 (839)
+.++.+++ .+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+....|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~-~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCC-CcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34555443 2334443222 567777777777665555566667777777777776665556666667777777777765
Q ss_pred ccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 695 NLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 695 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
.....+..+..+++|+.|++++|.+....+.. ..+++|++|++++|.+.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 44322333566777777777777665444433 455667777777776654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=142.25 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=52.7
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|... .++.....++|+.|+|++|.+.+ +| .+..+++|+.|++++|.+.. ++ .+..+++|+.|+|+
T Consensus 65 ~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 65 PNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLG 139 (605)
T ss_dssp TTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECC
T ss_pred CCCCEEEeeCCCCC-CChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECC
Confidence 44555555554322 22222233445555555544432 22 34444455555555443332 21 23344445555554
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
+|.... + ..+..+++|+.|+|++|.+....| ...+++|+.|+|++|++.
T Consensus 140 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 140 NNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp SSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 443322 2 234444445555555444433222 333444555555544444
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-12 Score=122.67 Aligned_cols=132 Identities=16% Similarity=0.018 Sum_probs=83.9
Q ss_pred cccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 612 QSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
++|++|++++|......+..+ ..++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 456666666654332222222 2366777777777766555555667778888888777665444444566777888888
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccc
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEW 749 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 749 (839)
++|+..+..+..+..+++|+.|++++|++.. .+++|++|+++.|.+.+.+|.+
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred CCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeecc
Confidence 7776554444446777778888887776543 3567777777777777766643
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=119.63 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=84.1
Q ss_pred cceeEeccCCCchhhhhhcCCCCcceeeecccccccCcc-ccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 614 LKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLP-ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
-+.++++++. ++.+|..+ ...++.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 13 ~~~l~~s~n~-l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSC-CSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCC-cccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3466666653 33344322 2456777777777766543 3356777777777777766555555667777777777777
Q ss_pred ccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCc
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
|...+..|..+..+++|++|++++|.+....|.. ..+++|++|++++|.+.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 7665555555777777777777777776554443 4567777777777776654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=119.77 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=107.5
Q ss_pred cccccceeEeccCCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 610 LPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++++++.|++++|......+..+. .++|+.|++++|++.+..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 345678888877754433332333 4789999999999988888899999999999999997764444456778999999
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
++++|.+....|..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999877777888999999999999999987655543 56889999999999876
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=119.20 Aligned_cols=133 Identities=13% Similarity=-0.020 Sum_probs=83.3
Q ss_pred ccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 611 PQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
+++|+.|++++|......+..+ ..++|+.|++++|++....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 3566666666665444333333 236677777777776444444556777777777777765544444456677777777
Q ss_pred cccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
+++|.. ..+|..+..+++|+.|++++|.+....+.. ..+++|+.|++++|++..
T Consensus 119 Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 119 MCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777753 366777777777777777777665433322 456777777777777653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=119.76 Aligned_cols=130 Identities=14% Similarity=0.034 Sum_probs=99.8
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+.+.++.+++ .+..+|..+ .++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 20 s~~~v~c~~~-~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTS-CCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCC-CcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3556666553 344455432 27899999999999888888888999999999999976544445567889999999999
Q ss_pred ccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCc
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
|......+..+..+++|+.|++++|.+. .+|.. ..+++|++|++++|.+.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence 9765544555788999999999999886 55544 6788999999999988753
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.9e-12 Score=125.61 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=87.6
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
++..+.+.++. +..++.....++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSC-TTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCC-cccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 35555555543 2222222233666666666665542 33 45566666666666665443 332 55566666666666
Q ss_pred ccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 772 (839)
|+. ..+|.. .. ++|+.|++++|.+.. ++....+++|++|++++|++.+. + .+..++
T Consensus 95 N~l-~~l~~~-~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~-~--~l~~l~----------------- 150 (263)
T 1xeu_A 95 NRL-KNLNGI-PS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSI-V--MLGFLS----------------- 150 (263)
T ss_dssp SCC-SCCTTC-CC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBC-G--GGGGCT-----------------
T ss_pred Ccc-CCcCcc-cc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCC-h--HHccCC-----------------
Confidence 643 334432 22 666666666665543 34345566666666666666542 1 123333
Q ss_pred CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCC
Q 036119 773 PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 811 (839)
+|+.|++++|..... ..+..+++|+.|++++|
T Consensus 151 -----~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 151 -----KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -----TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred -----CCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 556666666644333 34555666666666665
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=118.29 Aligned_cols=134 Identities=12% Similarity=-0.008 Sum_probs=106.2
Q ss_pred ccccceeEeccCCCchhhhh--hcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 611 PQSLKYLKIEDCSKLESLAE--RLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++.++.|++++|......+. ....++|+.|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 34567777777654333222 2245788999999988877777788899999999999998876666667888999999
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
++++|.+.+..|..+..+++|+.|++++|.+....|.. ..+++|++|++++|++..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99999877777888999999999999999987765654 668899999999998874
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=130.49 Aligned_cols=132 Identities=16% Similarity=0.055 Sum_probs=68.7
Q ss_pred ccccceeEeccCCCchhhhhhc--CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 611 PQSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++.++.|++++|......+..+ ..++|+.|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3456666666664333222222 33556666666665555444455556666666666655443333344555566666
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-----CCCCCcceEEecCCCCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-----GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~ 743 (839)
++++|.+....|..+..+++|+.|++++|.+.. +|.. ..+++|+.|++++|++.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 666655444445555555666666666555543 2221 23455555555555554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=128.91 Aligned_cols=172 Identities=14% Similarity=0.076 Sum_probs=118.9
Q ss_pred cEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCC-cccccceeEeccCCCchhhhhhc-CCCCcceee
Q 036119 564 RTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGN-LPQSLKYLKIEDCSKLESLAERL-DNTSLEEIS 641 (839)
Q Consensus 564 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~ 641 (839)
+.++.+++ .+..+|.. +|..++.|+++++......+.... .+++|+.|++++|......+..+ ..++|+.|+
T Consensus 21 ~~l~c~~~-~l~~iP~~-----~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQS-----LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSS-CCSSCCSS-----CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCC-CcCccCcc-----CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 45666655 46666653 345788899888854433333232 45688999998886544333333 348899999
Q ss_pred ecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccC----cccccccccccccc
Q 036119 642 ISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCM----HNLTSLLNLKISEC 717 (839)
Q Consensus 642 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l----~~l~~L~~L~l~~~ 717 (839)
+++|++....+..+..+++|++|++++|.+....+..+..+++|+.|++++|... .+|..+ ..+++|+.|++++|
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSS
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCC
Confidence 9998887766667788899999999998877666777888889999999888644 455443 56888999999988
Q ss_pred cCCccCCCC--CCCCC--cceEEecCCCCC
Q 036119 718 PSVVSFPED--GFPTN--LQSLDVHDLKIS 743 (839)
Q Consensus 718 ~~~~~~~~~--~~~~~--L~~L~l~~~~~~ 743 (839)
.+.. +|.. ..+++ |+.|++++|++.
T Consensus 174 ~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKK-LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCC-CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCc-cCHHHhhhccHhhcceEEecCCCcc
Confidence 8763 4421 23444 478889888876
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-11 Score=119.08 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=49.9
Q ss_pred hcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
+..+++|++|++++|. +..+| .+..+++|++|++++|.+.+..| +.. +++|++|++++| .++
T Consensus 37 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~-----l~~L~~L~L~~N-~l~ 98 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP--LKD-----LTKLEELSVNRN-RLK 98 (263)
T ss_dssp HHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTT-----CSSCCEEECCSS-CCS
T ss_pred hhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh--hcc-----CCCCCEEECCCC-ccC
Confidence 4567889999999998 88888 68889999999999999855433 445 899999999986 555
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=113.06 Aligned_cols=137 Identities=14% Similarity=0.042 Sum_probs=69.5
Q ss_pred CCCCCeEEecCCCCC-cccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceE
Q 036119 658 LHHLQKIWIFGCPNL-ESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSL 735 (839)
Q Consensus 658 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L 735 (839)
.++|++|++++|... ..+|..+..+++|++|++++|.... + ..+..+++|+.|++++|.+...+|.. ..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345555555555443 2445444555555555555554322 2 44555555666666655554433332 225566666
Q ss_pred EecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccc---cCCCCCCccCeeeccCCC
Q 036119 736 DVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS---SIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 736 ~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~l~~c~ 812 (839)
++++|.+.+......+.. +++|+.|++++|+.....+ ..+..+++|+.|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~----------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n- 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKK----------------------LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR- 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSS----------------------CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-
T ss_pred eccCCccCcchhHHHHhc----------------------CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-
Confidence 666665544211000111 1246666666665433222 24566777888888777
Q ss_pred CccccCC
Q 036119 813 KLKYFSE 819 (839)
Q Consensus 813 ~l~~l~~ 819 (839)
.+..+|.
T Consensus 158 ~~~~~~~ 164 (168)
T 2ell_A 158 EDQEAPD 164 (168)
T ss_dssp TSCBCCS
T ss_pred Chhhccc
Confidence 4455543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.8e-12 Score=144.36 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=59.5
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
.+|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 45555555555543 44444445566666666665444 45555555556666666665433 45555566666666666
Q ss_pred ccccCCccCCCC-CCCCCcceEEecCCCCCCccc
Q 036119 715 SECPSVVSFPED-GFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 715 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 747 (839)
++|.+. .+|.. +.+++|++|+|++|++.+.++
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 665543 34432 445566666666666555443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-11 Score=112.80 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=80.8
Q ss_pred CCcceeeecccccc-cCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccc
Q 036119 635 TSLEEISISVLENL-KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 713 (839)
++++.|++++|.+. +.+|..+..+++|++|++++|..... ..+..+++|++|++++|...+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55667777777665 56776777888888888888866544 5567788888888888876666777777788888888
Q ss_pred cccccCCccC--CCCCCCCCcceEEecCCCCCCc
Q 036119 714 ISECPSVVSF--PEDGFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 714 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 745 (839)
+++|.+.... +....+++|++|++++|++.+.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 8888875421 2335678888888888877653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-11 Score=113.33 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=76.0
Q ss_pred CCcceeeecccccc-cCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccc
Q 036119 635 TSLEEISISVLENL-KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 713 (839)
++|+.|++++|.+. +.+|..+..+++|++|++++|..... ..+..+++|++|++++|...+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 46666667778888888888865443 5566777888888888876665676666788888888
Q ss_pred cccccCCccC--CCCCCCCCcceEEecCCCCCCc
Q 036119 714 ISECPSVVSF--PEDGFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 714 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 745 (839)
+++|.+.... +....+++|++|++++|++.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 8888765422 2235677888888888877653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=110.28 Aligned_cols=129 Identities=13% Similarity=0.076 Sum_probs=96.3
Q ss_pred ceeEeccCCCchhhhhhcCCCCcceeeecccccccCccc-cccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccc
Q 036119 615 KYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPA-DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC 693 (839)
Q Consensus 615 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 693 (839)
+.++++++. ++.+|..+. .+++.|++++|.+.+..+. .+..+++|++|++++|.+....|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~-l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCC-cCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 455665543 244444222 3778888888877655543 3778889999999998877777778888889999999998
Q ss_pred cccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCc
Q 036119 694 ENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 694 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
.+.+..|..+..+++|++|++++|.+....|.. ..+++|++|++++|++.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777666667888899999999999887766654 6678899999999988743
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-11 Score=108.62 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=47.8
Q ss_pred CCCCCeEEecCCCCC-cccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceE
Q 036119 658 LHHLQKIWIFGCPNL-ESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSL 735 (839)
Q Consensus 658 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L 735 (839)
.++|+.|++++|... +.+|..+..+++|++|++++|.... + ..+..+++|+.|++++|.+...+|.. ..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456666666666554 3555555566666666666664333 2 44556666666666666555433332 225556666
Q ss_pred EecCCCCCC
Q 036119 736 DVHDLKISK 744 (839)
Q Consensus 736 ~l~~~~~~~ 744 (839)
++++|.+.+
T Consensus 94 ~ls~N~i~~ 102 (149)
T 2je0_A 94 NLSGNKIKD 102 (149)
T ss_dssp ECTTSCCCS
T ss_pred ECCCCcCCC
Confidence 666655543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-12 Score=144.11 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=127.0
Q ss_pred cccceeEeccCCCchhhhhhcC-CCCcceeeecccc-------------cccCccccccCCCCCCeEE-ecCCCCCcccC
Q 036119 612 QSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLE-------------NLKSLPADLHNLHHLQKIW-IFGCPNLESFP 676 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~~ 676 (839)
++|+.|++++|. ++.+|..+. .++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.. ..++
T Consensus 349 ~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L~ 426 (567)
T 1dce_A 349 EQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDLR 426 (567)
T ss_dssp TTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHHH
T ss_pred ccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chhh
Confidence 578888888874 456665544 3778888886664 4455666677778888887 443311 1111
Q ss_pred C--------CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccc
Q 036119 677 E--------EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 677 ~--------~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 747 (839)
. .......|+.|++++|.. ..+|. +..+++|+.|++++|.+. .+|.. +.+++|++|++++|.+.+ +|
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred hhhhhcccccccCccCceEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 0 000112578888888854 44776 888888888888888776 55544 667888888888888775 33
Q ss_pred cccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCcc-ccCCCCCCccCeeeccCCCCccccCCCC-----
Q 036119 748 EWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESI-SSIGENLTSLKTLRLSDCPKLKYFSEQG----- 821 (839)
Q Consensus 748 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~----- 821 (839)
. +.. +++|+.|++++|...+.. |..+..+++|+.|++++| .++.+|+..
T Consensus 503 ~--l~~----------------------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 503 G--VAN----------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAE 557 (567)
T ss_dssp G--GTT----------------------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHH
T ss_pred c--cCC----------------------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHH
Confidence 1 122 347888888888776665 888899999999999998 677776532
Q ss_pred CCcccceee
Q 036119 822 LPKSLLQLH 830 (839)
Q Consensus 822 ~~~sL~~L~ 830 (839)
..|+|+.|+
T Consensus 558 ~lp~L~~L~ 566 (567)
T 1dce_A 558 MLPSVSSIL 566 (567)
T ss_dssp HCTTCSEEE
T ss_pred HCcccCccC
Confidence 135788775
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-10 Score=105.33 Aligned_cols=125 Identities=16% Similarity=0.074 Sum_probs=92.6
Q ss_pred eeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccc
Q 036119 616 YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN 695 (839)
Q Consensus 616 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 695 (839)
.++++++. +..+|..+ .++++.|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 14 ~l~~~~~~-l~~ip~~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSC-CSSCCSCC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCC-CCcCCCCC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 44444432 33344322 257777888887775 5667888899999999999987766666788889999999999876
Q ss_pred cccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 696 LKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 696 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
....|..+..+++|+.|++++|.+....+.. ..+++|+.|++++|++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666667888999999999999886544332 56788999999999875
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-09 Score=101.60 Aligned_cols=131 Identities=15% Similarity=-0.011 Sum_probs=92.4
Q ss_pred cceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccc
Q 036119 614 LKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC 693 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 693 (839)
.+.+++.++. +..++... .++|+.|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~-l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCC-CccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3445554442 23333221 257788888888776655556778899999999998766544455678889999999998
Q ss_pred cccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCcc
Q 036119 694 ENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 694 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 746 (839)
...+..+..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 766555556788899999999999876443333 55788999999999887543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=104.67 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=91.4
Q ss_pred ccccceeEeccCCCchhhhh--hcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 611 PQSLKYLKIEDCSKLESLAE--RLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
+.+++.|++++|......+. ....++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 34677777777754332222 2345889999999999988888889999999999999998877777778889999999
Q ss_pred ecccccccccccccCcccccccccccccccCCcc
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVS 722 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 722 (839)
++++|++.+..|..+..+++|+.|++++|++...
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999988888888999999999999999988643
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-10 Score=108.06 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=83.4
Q ss_pred cccceeEeccCCCchhhhhhcCC-CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCC-CCCCCcceEe
Q 036119 612 QSLKYLKIEDCSKLESLAERLDN-TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEG-LPSTKLTELT 689 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ 689 (839)
++|+.|++++|... .++..... ++|+.|++++|.+.+. ..+..+++|++|++++|.+. .+|... ..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEE
Confidence 45677777766432 33333333 3777777777776553 46677888888888888655 344333 6677888888
Q ss_pred cccccccccccc--cCcccccccccccccccCCccCCC-----CCCCCCcceEEecCCCCC
Q 036119 690 IYDCENLKALPN--CMHNLTSLLNLKISECPSVVSFPE-----DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 690 l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~ 743 (839)
+++|.. +.+|. .+..+++|+.|++++|++.. +|. ...+++|+.|++++|...
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888754 55665 67778888888888887753 343 245677888888877654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-10 Score=133.11 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=101.6
Q ss_pred eeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccC
Q 036119 640 ISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPS 719 (839)
Q Consensus 640 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 719 (839)
+++..|.+. ..+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 333344333 45667889999999999999765 77877778999999999999755 8999999999999999999998
Q ss_pred CccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCC----CcccceeeecCCCCCCccc
Q 036119 720 VVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPF----PASLTNLWISDMPDLESIS 794 (839)
Q Consensus 720 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~ 794 (839)
. .+|.. +.+++|++|+|++|.+. .+|.. +..+++|+.|++++|...- .++.. ...+..+++++|.....+|
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChh-hhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCcCc
Confidence 7 66755 77899999999999886 45543 6778888888887753210 11111 0122346677777666655
Q ss_pred cCCCCCCccCeeeccCC
Q 036119 795 SIGENLTSLKTLRLSDC 811 (839)
Q Consensus 795 ~~~~~l~~L~~L~l~~c 811 (839)
. .|+.|+++++
T Consensus 359 ~------~l~~l~l~~n 369 (727)
T 4b8c_D 359 H------ERRFIEINTD 369 (727)
T ss_dssp C------C---------
T ss_pred c------ccceeEeecc
Confidence 3 4556666665
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.3e-09 Score=108.81 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=130.1
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccC--------CCC
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHN--------LHH 660 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------l~~ 660 (839)
+++.|.+.+.-....+......+++|+.|++++|............+.+..+.+..+.+ .+..|.+ +++
T Consensus 26 ~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTT
T ss_pred ceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccccccccCC
Confidence 57777777643222211111114567777777765431000000001122222222211 1123445 777
Q ss_pred CCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccccc-----------------ccCCc--
Q 036119 661 LQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISE-----------------CPSVV-- 721 (839)
Q Consensus 661 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~-----------------~~~~~-- 721 (839)
|+.+++.+ .....-+..+..+++|+.+++.+|.....-+..|..+.++..+.... |..+.
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 88888777 34433334566777788888877754433344455555555444332 11110
Q ss_pred -------cCCC-----------------C------------CCCCCcceEEecCCCCCCccccccCCCccccceEEEecC
Q 036119 722 -------SFPE-----------------D------------GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGG 765 (839)
Q Consensus 722 -------~~~~-----------------~------------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 765 (839)
.++. . ..+++|+++++++|.+.. ++...+.++++|+.+++.++
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc
Confidence 0000 0 026789999999888764 66667888999999999875
Q ss_pred CCCCcC-CCCCCcccc-eeeecCCCCCCcc-ccCCCCCCccCeeeccCCCCccccCCCCCC--cccceee
Q 036119 766 CPDLVS-PPPFPASLT-NLWISDMPDLESI-SSIGENLTSLKTLRLSDCPKLKYFSEQGLP--KSLLQLH 830 (839)
Q Consensus 766 ~~~~~~-~~~~~~~L~-~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~ 830 (839)
...+.. ...-+++|+ .+++.+ .++.+ +..+..+++|+.++++++ +++.++...+. ++|+.++
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 322211 112456798 999988 34455 456688999999999876 78888876553 4666664
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.6e-09 Score=98.48 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=88.2
Q ss_pred cccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 610 LPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++++|+.|++++|... .++..+ ..++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 29 ~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 3456778888777543 444333 34889999999999988777789999999999999998877667778889999999
Q ss_pred ecccccccccccccCcccccccccccccccCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
++++|.+....+..+..+++|+.|++++|+..
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999765544446889999999999999875
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-09 Score=102.87 Aligned_cols=107 Identities=10% Similarity=0.016 Sum_probs=75.9
Q ss_pred CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccccc-Ccccccccc
Q 036119 633 DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNC-MHNLTSLLN 711 (839)
Q Consensus 633 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~ 711 (839)
...+|+.|++++|.+.. +|......++|++|++++|.+.. + ..+..+++|++|++++|... .+|.. +..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 34678888888887764 45433334488888888886654 3 45677788888888888654 45544 478888888
Q ss_pred cccccccCCccCCC---CCCCCCcceEEecCCCCCC
Q 036119 712 LKISECPSVVSFPE---DGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 712 L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~ 744 (839)
|++++|.+. .+|. ...+++|++|++++|++..
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC
Confidence 888888774 4443 2567788888888887763
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.4e-08 Score=102.35 Aligned_cols=99 Identities=13% Similarity=-0.033 Sum_probs=51.3
Q ss_pred CCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc-ccCccccccc-ccccccccCCccCCCC--CCCCCcc
Q 036119 658 LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLL-NLKISECPSVVSFPED--GFPTNLQ 733 (839)
Q Consensus 658 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~-~L~l~~~~~~~~~~~~--~~~~~L~ 733 (839)
+++|+.+++++|.....-+..+..+++|+++++.+| +..++ ..|.+|++|+ .+++.+ .+ ..++.. ..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCC
Confidence 556666666665443333334555666666666554 33333 3455666666 666655 22 233322 3456666
Q ss_pred eEEecCCCCCCccccccCCCccccceEE
Q 036119 734 SLDVHDLKISKPLLEWGSNRFTSLRRFT 761 (839)
Q Consensus 734 ~L~l~~~~~~~~~~~~~~~~l~~L~~l~ 761 (839)
.+++++|.+.. ++...+.++++|+.++
T Consensus 301 ~l~l~~n~i~~-I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITT-LGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCc-cchhhhcCCcchhhhc
Confidence 66666665543 2333445555555553
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-11 Score=117.66 Aligned_cols=106 Identities=17% Similarity=0.042 Sum_probs=71.7
Q ss_pred CCcceeeecccccccCccc------cccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccc
Q 036119 635 TSLEEISISVLENLKSLPA------DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTS 708 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~ 708 (839)
..++.++++.+.+.+..|. .+..+++|++|++++|.... +| .+..+++|+.|++++|.. ..+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-KKIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-ccccchhhcCCc
Confidence 4555555555555555444 67778888888888876543 55 566677888888888754 467776677778
Q ss_pred ccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 709 LLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 709 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
|+.|++++|.+.. +|....+++|++|++++|.+.+
T Consensus 95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCC
T ss_pred CCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCc
Confidence 8888888876653 4433456777788887777664
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=95.92 Aligned_cols=112 Identities=18% Similarity=0.074 Sum_probs=82.2
Q ss_pred ccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 611 PQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
+++|+.|++++|......+..+ ..++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3567777777765433222222 347888888888888766666678899999999999977655555567789999999
Q ss_pred cccccccccccccCcccccccccccccccCCcc
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVS 722 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 722 (839)
+++|...+..+..+..+++|+.|++++|++...
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999876543334467899999999999987643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-09 Score=118.01 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=53.6
Q ss_pred cceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccccc
Q 036119 637 LEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISE 716 (839)
Q Consensus 637 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~ 716 (839)
|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4555555554433 343 555555555555555443 455555555555555555554332 44 455555555555555
Q ss_pred ccCCccC-CCC-CCCCCcceEEecCCCCCCc
Q 036119 717 CPSVVSF-PED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 717 ~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
|.+.... |.. +.+++|+.|++++|++.+.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5554432 322 4455555555555555543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=93.46 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=64.8
Q ss_pred ceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccc
Q 036119 638 EEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 638 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 717 (839)
+.++++++.+.. +|..+ .++|++|++++|.+....|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 345555554432 44433 366777777777666555666666777777777777554433344567777777777777
Q ss_pred cCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 718 PSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 718 ~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
.+....+.. ..+++|++|++++|++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 765433332 556777778887777653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-08 Score=93.07 Aligned_cols=107 Identities=18% Similarity=0.064 Sum_probs=84.1
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+.+.++++++. +..+|..+ .++++.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCC-cCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35667777653 34455433 37889999999999888888899999999999999987655555567899999999999
Q ss_pred ccccccccccCcccccccccccccccCCc
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 721 (839)
|++.+..+..+..+++|+.|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 97655444568999999999999998864
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=91.97 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=59.9
Q ss_pred eeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccccccc
Q 036119 639 EISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISEC 717 (839)
Q Consensus 639 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~ 717 (839)
.++++++.+ +.+|..+ .++|++|++++|.+....|..+..+++|++|++++|++.+ +|. .+..+++|+.|++++|
T Consensus 16 ~l~~~~n~l-~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRL-ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCC-CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCC
Confidence 344444444 3344433 2667777777776555555566666777777777765433 433 3466777777777777
Q ss_pred cCCccCCC-CCCCCCcceEEecCCCCC
Q 036119 718 PSVVSFPE-DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 718 ~~~~~~~~-~~~~~~L~~L~l~~~~~~ 743 (839)
.+....+. ...+++|++|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66543332 245677777777777665
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=91.35 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=80.3
Q ss_pred ceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccc
Q 036119 615 KYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694 (839)
Q Consensus 615 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 694 (839)
+.++++++. +..+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|+
T Consensus 15 ~~l~~~~n~-l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCC-CCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666553 344554332 788899999999888878888999999999999997665444446788999999999997
Q ss_pred ccccccccCcccccccccccccccCCc
Q 036119 695 NLKALPNCMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 695 ~l~~lp~~l~~l~~L~~L~l~~~~~~~ 721 (839)
+....+..+..+++|+.|++++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 554333458999999999999998764
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-06 Score=91.07 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=78.2
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+++|+.+++.++.....-...+...+|+.+.+..+ +...-...|.++++|+.+.+.++ ...++...+.-.+|+.+.+
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l 255 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL 255 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE
T ss_pred cccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe
Confidence 34566666655432222222333466666666533 33333345667778888888764 3344443333367888877
Q ss_pred ccccccccc-cccCcccccccccccccccCC----ccCCCC--CCCCCcceEEecCCCCCCccccccCCCccccceEEEe
Q 036119 691 YDCENLKAL-PNCMHNLTSLLNLKISECPSV----VSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIW 763 (839)
Q Consensus 691 ~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 763 (839)
.++ +..+ +..|.+|++|+.+.+.++... ..++.. ..+++|+.+++.++ +. .+....+.++++|+.+.+.
T Consensus 256 p~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 256 PNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp ETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEEC
T ss_pred CCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEEC
Confidence 432 3334 446777788888877766543 112222 45667777777632 22 2334444555555555553
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4e-09 Score=101.21 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=86.3
Q ss_pred HHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR- 366 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~- 366 (839)
..|..+++|++|++++|. +..+| .+.++++|++|++++|.+. .+|..+.. +++|++|++++| .++ .+|.
T Consensus 42 ~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-----~~~L~~L~L~~N-~l~-~l~~~ 111 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIK-KIENLDAV-----ADTLEELWISYN-QIA-SLSGI 111 (198)
T ss_dssp HHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-----HHHCSEEEEEEE-ECC-CHHHH
T ss_pred HHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcc-cccchhhc-----CCcCCEEECcCC-cCC-cCCcc
Confidence 467889999999999998 88898 8999999999999999985 56654333 789999999996 666 4663
Q ss_pred -CCCCccEEeecccC--ccc--ccCCCCCCccEEEeccccce
Q 036119 367 -RLLLLETLDITSCD--QLL--VTIQCLPALSELQIDGCKRV 403 (839)
Q Consensus 367 -~l~~L~~L~l~~~~--~l~--~~l~~l~~L~~L~l~~~~~~ 403 (839)
.+++|+.|++++|. .++ ..+..+++|++|++++|...
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 56789999999886 333 36889999999999998743
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7e-06 Score=87.52 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=40.8
Q ss_pred cccCCCCCCeEEecCCCCC-----cccCCCCCCCCCcceEecccccccccc-cccCcccccccccccccccCCccCCCC-
Q 036119 654 DLHNLHHLQKIWIFGCPNL-----ESFPEEGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLNLKISECPSVVSFPED- 726 (839)
Q Consensus 654 ~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~- 726 (839)
.|.++++|+.+.+.++... ..-+..+..+++|+.+.+.++ +..+ ...|.+|++|+.+.+..+ +..++..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHh
Confidence 4455566666666554322 122234555556666666532 3333 234555566666666433 2223222
Q ss_pred -CCCCCcceEEecCCCCC
Q 036119 727 -GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 727 -~~~~~L~~L~l~~~~~~ 743 (839)
..+ +|+.+++++|...
T Consensus 342 F~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SSSS-CCCEEEECCSSCC
T ss_pred CCCC-CCCEEEEcCCCCc
Confidence 223 5666666665443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-07 Score=95.52 Aligned_cols=93 Identities=18% Similarity=0.034 Sum_probs=57.1
Q ss_pred CccccccCCCCCCeEEecC-CCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCC
Q 036119 650 SLPADLHNLHHLQKIWIFG-CPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGF 728 (839)
Q Consensus 650 ~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 728 (839)
.+|. +..+++|++|+|++ |.+....+..+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.+....+....
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 4555 66666777777775 544433334566667777777777765555555667777777777777766543333222
Q ss_pred CCCcceEEecCCCCC
Q 036119 729 PTNLQSLDVHDLKIS 743 (839)
Q Consensus 729 ~~~L~~L~l~~~~~~ 743 (839)
..+|+.|++.+|++.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 223777777777765
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.9e-05 Score=80.66 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=28.6
Q ss_pred HHhcCCCceeEEEeCCCccccccc-ccccCcCcCcEeEecCc
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRT 328 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~ 328 (839)
.+|..+.+|+.+.+..+ +..++ .+|.++.+|+.+++..+
T Consensus 65 ~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS 104 (394)
T ss_dssp TTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred HHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC
Confidence 45778888888888643 55665 56778888888888654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.2e-09 Score=109.13 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=67.1
Q ss_pred cccceeEeccCCCchh----hhhhcC--CCCcceeeecccccccCccccc-cCCCCCCeEEecCCCCCcccCCCC-----
Q 036119 612 QSLKYLKIEDCSKLES----LAERLD--NTSLEEISISVLENLKSLPADL-HNLHHLQKIWIFGCPNLESFPEEG----- 679 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~----~~~~~~--~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~----- 679 (839)
++|+.|++++|..... +...+. .++|+.|++++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4677777777764322 122222 1467777777776543222222 234566777777765543221111
Q ss_pred CCCCCcceEecccccccc----cccccCcccccccccccccccCCccC----CC-CCCCCCcceEEecCCCCC
Q 036119 680 LPSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISECPSVVSF----PE-DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 680 ~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~~----~~-~~~~~~L~~L~l~~~~~~ 743 (839)
...++|++|++++|.+.. .++..+..+++|++|++++|.+.... +. ...+++|++|++++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 123567777777665432 23344455666666666666543211 00 023446666666666654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-08 Score=104.64 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=75.7
Q ss_pred cccceeEeccCCCchhhhhhc--CCCCcceeeecccccccCccccc-----cCCCCCCeEEecCCCCCcc----cCCCCC
Q 036119 612 QSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLENLKSLPADL-----HNLHHLQKIWIFGCPNLES----FPEEGL 680 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~ 680 (839)
++|+.|++++|.........+ ..++|+.|++++|.+.......+ ...++|++|++++|.+... ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 356666666664322211111 12456777777776654322222 2456778888887765431 222334
Q ss_pred CCCCcceEecccccccc----cccccCcccccccccccccccCCccCCCC-----CCCCCcceEEecCCCCCC
Q 036119 681 PSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISECPSVVSFPED-----GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 681 ~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~ 744 (839)
..++|++|++++|.+.. .++..+...++|++|++++|.+....... ...++|++|++++|++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 45678888888876432 23455666778888888888764321110 234678888888887763
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=91.21 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=43.0
Q ss_pred CcccccCCCCcccccceeEeccCCCchhhh-hhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC
Q 036119 600 NLALLSRNGNLPQSLKYLKIEDCSKLESLA-ERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE 677 (839)
Q Consensus 600 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 677 (839)
.++.+|. ....++|+.|+++++..+..++ ..+ ..++|+.|+|++|++.+..|..|..+++|++|+|++|.+. .+|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCH
Confidence 3444444 2223445666665422333332 222 2355555555555555555555555555555555555443 2332
Q ss_pred CCCCCCCcceEeccccc
Q 036119 678 EGLPSTKLTELTIYDCE 694 (839)
Q Consensus 678 ~~~~~~~L~~L~l~~~~ 694 (839)
......+|+.|++.+|+
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 22222225555555554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-06 Score=91.04 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=51.8
Q ss_pred ccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccC--cccccccccccccc--c-C----Cc
Q 036119 651 LPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCM--HNLTSLLNLKISEC--P-S----VV 721 (839)
Q Consensus 651 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l--~~l~~L~~L~l~~~--~-~----~~ 721 (839)
++..+..+|+|+.|.+++|... .++. + .+++|++|+|..|.........+ ..+|+|+.|+|+.+ . . ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3344556778888888776322 2333 2 36788888887775433222222 25778888877532 1 1 10
Q ss_pred c---CCCCCCCCCcceEEecCCCCCC
Q 036119 722 S---FPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 722 ~---~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
. ......+|+|++|++++|.+..
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 0 1111346788888888887763
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00031 Score=74.99 Aligned_cols=145 Identities=18% Similarity=0.047 Sum_probs=73.3
Q ss_pred cCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC--CCCCCcc
Q 036119 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQ 733 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~ 733 (839)
....+|+.+.+... ....-...+..+.+|+.+.+..+ ....-...+..+..++.+...... ++.. ..+.+|+
T Consensus 227 ~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 227 LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLT 300 (394)
T ss_dssp TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCC
T ss_pred cccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee----ecccccccccccc
Confidence 34556677766543 22222334555667777777654 222223455666666666555432 2222 3456777
Q ss_pred eEEecCCCCCCccccccCCCccccceEEEecCCCCCcC-CCCCCcccceeeecCCCCCCccc-cCCCCCCccCeeeccC
Q 036119 734 SLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVS-PPPFPASLTNLWISDMPDLESIS-SIGENLTSLKTLRLSD 810 (839)
Q Consensus 734 ~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 810 (839)
.+.+..+ ...+.+..+.++++|+.+.+.++...+.. ...-+.+|+.+++..+ ++.+. ..+.+|++|+.+++..
T Consensus 301 ~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 301 EVKLLDS--VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EEEECTT--CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccc--cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 7777654 22344455666677777766443221111 0112345666666544 33332 2335566666666653
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-06 Score=89.32 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=8.7
Q ss_pred CCCccEEEEcCC
Q 036119 560 PSQLRTIIIGGC 571 (839)
Q Consensus 560 ~~~L~~L~l~~~ 571 (839)
+++|+.|.+.+.
T Consensus 138 l~~L~~L~l~~~ 149 (362)
T 2ra8_A 138 FAHFEGLFWGDI 149 (362)
T ss_dssp HTTCSEEEECCC
T ss_pred cchhhheeecCc
Confidence 458888888654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0018 Score=68.92 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred cccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc-ccCcccccccccccccccCCccCCCC--CCCC
Q 036119 654 DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKISECPSVVSFPED--GFPT 730 (839)
Q Consensus 654 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 730 (839)
.|.++++|+.+.+.+. ....-...+..+++|+.+.+.. .+..++ ..|.+|.+|+.+.|..+ ++.+... ..+.
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 4556677777776543 2222233455666777777753 233343 34566777777776543 2333332 3456
Q ss_pred CcceEEecCCCCCCccccccCCCccccceEEEe
Q 036119 731 NLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIW 763 (839)
Q Consensus 731 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 763 (839)
+|+.+.+..+ + ..+....+.++++|+.+.+.
T Consensus 335 ~L~~i~ip~s-v-~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 335 QLERIAIPSS-V-TKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEEECTT-C-CBCCGGGGTTCTTCCEEEES
T ss_pred CCCEEEECcc-c-CEEhHhHhhCCCCCCEEEEC
Confidence 6776666433 2 22333344444444444443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.69 E-value=1.5e-05 Score=72.51 Aligned_cols=87 Identities=9% Similarity=0.153 Sum_probs=48.7
Q ss_pred CceeEEEeCCCcccccc-cccccCcCcCcEeEecCcc-ccccccCCCCCCccccC----CCccEEeccCccccccCCCcC
Q 036119 294 PRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTK-WEEWIPCGAGQEVDEVF----PKLRTLSLDNCCKLQGTLPRR 367 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~-~~~~~p~~~~~~~~~~l----~~L~~L~L~~~~~l~~~lp~~ 367 (839)
.+|+.||+++|. ++.. -..+.++++|++|+|++|. +++.--.. +..+ ++|++|++++|.+++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-----L~~~~~~~~~L~~L~Ls~C~~ITD----- 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-----LSQLENLQKSMLEMEIISCGNVTD----- 129 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-----HHTCHHHHHHCCEEEEESCTTCCH-----
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-----HHhcccccCCCCEEEcCCCCcCCH-----
Confidence 468888888887 4442 2345677777777777774 32210000 1112 2466666666654441
Q ss_pred CCCccEEeecccCcccccCCCCCCccEEEecccccee
Q 036119 368 LLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVV 404 (839)
Q Consensus 368 l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 404 (839)
.-...+..+++|++|++++|..++
T Consensus 130 -------------~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 -------------KGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp -------------HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred -------------HHHHHHhcCCCCCEEECCCCCCCC
Confidence 011335567788888888776443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.61 E-value=2.6e-05 Score=70.95 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=28.2
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCc
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLV 503 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 503 (839)
.|+.|++++|.+...-...+..+++|+.|++++|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 68888888888655444456778888888888886554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.009 Score=63.54 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCccccccCCCcc
Q 036119 678 EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFT 755 (839)
Q Consensus 678 ~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 755 (839)
.+..+.+|+.+.+.+.- ...-...+.++++|+.+.+... +..++.. ..+.+|+.+++..+ ...+.+..+.++.
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 45666777777775531 2222345667777877777532 2344433 34567777777654 2233444455555
Q ss_pred ccceEEE
Q 036119 756 SLRRFTI 762 (839)
Q Consensus 756 ~L~~l~l 762 (839)
+|+.+.+
T Consensus 335 ~L~~i~i 341 (394)
T 4gt6_A 335 QLERIAI 341 (394)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 5555555
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=71.54 Aligned_cols=71 Identities=25% Similarity=0.381 Sum_probs=52.5
Q ss_pred HHHHhcCCCceeEEEeCCCcccccc---cccccCcCcCcEeEecCccccccccCCCCCCccccCC--CccEEeccCcccc
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNL---PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFP--KLRTLSLDNCCKL 360 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~l---p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~--~L~~L~L~~~~~l 360 (839)
++-...++++|++|+|++|. +..+ |..+..+++|++|+|++|.+.+. ..+.. +. +|++|+|++| .+
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-----l~~l~L~~L~L~~N-pl 232 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-----IKGLKLEELWLDGN-SL 232 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-----GTTSCCSEEECTTS-TT
T ss_pred HHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-----cccCCcceEEccCC-cC
Confidence 33344678999999999999 6554 46678999999999999998654 12222 44 8999999997 45
Q ss_pred ccCCC
Q 036119 361 QGTLP 365 (839)
Q Consensus 361 ~~~lp 365 (839)
.+.+|
T Consensus 233 ~~~~~ 237 (267)
T 3rw6_A 233 CDTFR 237 (267)
T ss_dssp GGGCS
T ss_pred ccccC
Confidence 54554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=2.2e-05 Score=73.69 Aligned_cols=90 Identities=20% Similarity=0.143 Sum_probs=47.0
Q ss_pred cccCCCCCCeEEecCCCCCcc----cCCCCCCCCCcceEecccccccc----cccccCccccccccccc--ccccCCccC
Q 036119 654 DLHNLHHLQKIWIFGCPNLES----FPEEGLPSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKI--SECPSVVSF 723 (839)
Q Consensus 654 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l--~~~~~~~~~ 723 (839)
.+...++|++|++++|.+... +...+...++|++|++++|.+.. .+...+...++|++|++ ++|.+....
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 344556666666666654321 12222233566666666665432 13445555666777777 556553221
Q ss_pred C----CC-CCCCCcceEEecCCCCC
Q 036119 724 P----ED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 724 ~----~~-~~~~~L~~L~l~~~~~~ 743 (839)
. .. ...++|++|++++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 00 22356777777777653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.045 Score=57.67 Aligned_cols=102 Identities=19% Similarity=0.072 Sum_probs=48.2
Q ss_pred ccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc-cccCcccccccccccccccCCccCCCC--CCCCC
Q 036119 655 LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLNLKISECPSVVSFPED--GFPTN 731 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~ 731 (839)
+....+|+.+.+..+ ........+..+.+|+.+.+..+ +..+ ...+.++.+|+.+.+... +..++.. ..+++
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence 334555666655443 22222234445566666666543 2223 234555666666666432 2223322 34566
Q ss_pred cceEEecCCCCCCccccccCCCccccceEEE
Q 036119 732 LQSLDVHDLKISKPLLEWGSNRFTSLRRFTI 762 (839)
Q Consensus 732 L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l 762 (839)
|+.+.+.++.+.. +.+..+.++++|+.+.+
T Consensus 288 L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 288 LTKVVMDNSAIET-LEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CCEEEECCTTCCE-ECTTTTTTCTTCCEEEC
T ss_pred cccccccccccce-ehhhhhcCCCCCCEEEc
Confidence 6666666554432 23333444444444444
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.034 Score=58.69 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=71.3
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc-ccCcccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~ 713 (839)
.+++.+.+..+ ........+.++..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..++ ..+.+|++|+.+.
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccccccc
Confidence 45666655432 11222235567888999998765 33233345667788999988653 44443 3578889999999
Q ss_pred cccccCCccCCCC--CCCCCcceEEecCCCCCCccccccCCCccccceE
Q 036119 714 ISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRF 760 (839)
Q Consensus 714 l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l 760 (839)
+.++.+. .++.. ..+.+|+.+.+..+ + ..+....+.++++|+.+
T Consensus 293 l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 293 MDNSAIE-TLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCKALSTI 338 (379)
T ss_dssp ECCTTCC-EECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCCC
T ss_pred ccccccc-eehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCEE
Confidence 9876553 34433 45688999988654 2 22333344444444333
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00057 Score=71.62 Aligned_cols=188 Identities=11% Similarity=0.092 Sum_probs=100.8
Q ss_pred CcEEEEEeccCCCCh------hh-HhhhhcccCCCCCCCEEEEEecChHHHHHh----C--------CCCeEeCCCCCcc
Q 036119 9 KKFLLVLDDVWNENY------SR-WSELSCPFGAGAAGSKIVVTTRNLVVAERM----G--------ADPVYQLKELSDD 69 (839)
Q Consensus 9 k~~LlvLDdv~~~~~------~~-~~~l~~~~~~~~~gs~iivTtr~~~v~~~~----~--------~~~~~~~~~l~~~ 69 (839)
++++||+||++.-+. .+ +..+..... ..++.++|+|++...+...+ . ....+++.+|+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 389999999954221 12 232322221 12578999999987653322 1 1237999999999
Q ss_pred cccCcCC-------CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHH-HHHhccccccCCCCCcch----hchh
Q 036119 70 DCLDFTR-------HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWE-FVLKTDIWNLRDSDILPA----LRLK 137 (839)
Q Consensus 70 ~~~~~~~-------~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~-~~~~~~~~~~~~~~~~~~----l~~k 137 (839)
|+.++.. ..--.+.+.++++.++|.|.++..++..+....+...|. ...+.....+. .++... -..+
T Consensus 207 e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~ 285 (350)
T 2qen_A 207 TSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM-GELEELRRRSPRYV 285 (350)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH-HHHHHHHhCChhHH
Confidence 9884321 111246778999999999999999987643211222221 11110000000 000000 1134
Q ss_pred hhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceee-cHHHHHH
Q 036119 138 QCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVM-HDLINDL 212 (839)
Q Consensus 138 ~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~m-Hdlv~~l 212 (839)
..+..+|. + ......+.....+.. - +. -......+++.|++.+++... .+.|.+ |.++++.
T Consensus 286 ~~l~~la~---g-~~~~~~l~~~~~~~~-~-----~~-~~~~~~~~l~~L~~~gli~~~---~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 286 DILRAIAL---G-YNRWSLIRDYLAVKG-T-----KI-PEPRLYALLENLKKMNWIVEE---DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHT---T-CCSHHHHHHHHHHTT-C-----CC-CHHHHHHHHHHHHHTTSEEEE---TTEEEESSHHHHHH
T ss_pred HHHHHHHh---C-CCCHHHHHHHHHHHh-C-----CC-CHHHHHHHHHHHHhCCCEEec---CCEEEEecHHHHHH
Confidence 45555554 2 123344444332211 0 01 124567889999999999765 245665 5566654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=8.5e-05 Score=69.59 Aligned_cols=109 Identities=20% Similarity=0.117 Sum_probs=70.8
Q ss_pred cccceeEeccC-CCch----hhhhhc-CCCCcceeeecccccccC----ccccccCCCCCCeEEecCCCCCcc----cCC
Q 036119 612 QSLKYLKIEDC-SKLE----SLAERL-DNTSLEEISISVLENLKS----LPADLHNLHHLQKIWIFGCPNLES----FPE 677 (839)
Q Consensus 612 ~~L~~L~l~~~-~~l~----~~~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~ 677 (839)
++|++|++++| ..-. .+...+ ..++|++|+|++|.+... +...+...++|++|++++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45777777777 3322 122222 237788888888877542 233445667889999998876543 334
Q ss_pred CCCCCCCcceEec--cccccccc----ccccCcccccccccccccccCC
Q 036119 678 EGLPSTKLTELTI--YDCENLKA----LPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 678 ~~~~~~~L~~L~l--~~~~~l~~----lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
.+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555678999999 77765432 3445666788999999888753
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0015 Score=68.61 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=100.7
Q ss_pred CcEEEEEeccCCCC---hhhHhhhhcccCCCCCCCEEEEEecChHHHHHh-----------C-CCCeEeCCCCCcccccC
Q 036119 9 KKFLLVLDDVWNEN---YSRWSELSCPFGAGAAGSKIVVTTRNLVVAERM-----------G-ADPVYQLKELSDDDCLD 73 (839)
Q Consensus 9 k~~LlvLDdv~~~~---~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~-----------~-~~~~~~~~~l~~~~~~~ 73 (839)
++++||+||+...+ ..+|..+...+....++.++|+|+|.......+ + ....+++.+|+.+|+.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 48999999994421 123333333222223478999999987654322 1 12479999999999874
Q ss_pred cCCC------chHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHH-HHhc-------cccccCCCCCcchhchhhh
Q 036119 74 FTRH------QSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEF-VLKT-------DIWNLRDSDILPALRLKQC 139 (839)
Q Consensus 74 ~~~~------~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~-~~~~-------~~~~~~~~~~~~~l~~k~~ 139 (839)
+... ....+. .+|++.++|.|.++..++..+....+...|-. ..+. ...+.......-.-..+..
T Consensus 217 ~l~~~~~~~~~~~~~~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 295 (357)
T 2fna_A 217 FLRRGFQEADIDFKDY-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNI 295 (357)
T ss_dssp HHHHHHHHHTCCCCCH-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCCcH-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHH
Confidence 3211 001112 78999999999999999877643223333321 1110 0000000000000014455
Q ss_pred hhhhccCCCCcccChhHHHHHHH-HcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceee-cHHHHHH
Q 036119 140 FAYSSLFPKDYEFQDEEIILLWT-AEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVM-HDLINDL 212 (839)
Q Consensus 140 f~~~a~f~~~~~~~~~~li~~w~-~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~m-Hdlv~~l 212 (839)
+..+|. +. +...+..... ..|. ..-......+++.|++.+++.... +.|.+ |.++++.
T Consensus 296 l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 296 MRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred HHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 566665 21 3333333221 1221 001244667899999999997652 45664 6777764
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00025 Score=69.86 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=26.3
Q ss_pred CCCCCeEEecCCCCCc--ccCCCCCCCCCcceEecccccccccccccCcccc--cccccccccccCCccC
Q 036119 658 LHHLQKIWIFGCPNLE--SFPEEGLPSTKLTELTIYDCENLKALPNCMHNLT--SLLNLKISECPSVVSF 723 (839)
Q Consensus 658 l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~--~L~~L~l~~~~~~~~~ 723 (839)
+++|+.|+|++|.+.. .+|..+..+++|+.|+|++|.+.+ + ..+..+. +|++|++++|++...+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCcccc
Confidence 4444444444444332 222222334445555554443322 1 1122222 5555555555554433
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0051 Score=66.00 Aligned_cols=186 Identities=10% Similarity=-0.027 Sum_probs=97.2
Q ss_pred CCcEEEEEeccCCC------ChhhHhhhhcccCCC---C--CCCEEEEEecChHHHHHhC---------CCCeEeCCCCC
Q 036119 8 GKKFLLVLDDVWNE------NYSRWSELSCPFGAG---A--AGSKIVVTTRNLVVAERMG---------ADPVYQLKELS 67 (839)
Q Consensus 8 ~k~~LlvLDdv~~~------~~~~~~~l~~~~~~~---~--~gs~iivTtr~~~v~~~~~---------~~~~~~~~~l~ 67 (839)
+++++||+||+|.- ....+..+...+... + .+..||+|||+.++...+. ....+++++++
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~ 216 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK 216 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC
Confidence 67999999999652 123444443333211 2 3455888988766432211 12349999999
Q ss_pred cccccCcCC--------Cc-hHHHHHHHHHHHhC------CChHHHHHHHH-Hh-----cCC--CChhHHHHHHhccc-c
Q 036119 68 DDDCLDFTR--------HQ-SLKEVGEQIVIKCG------GLPLAAKTLGG-LL-----RGR--DDPRDWEFVLKTDI-W 123 (839)
Q Consensus 68 ~~~~~~~~~--------~~-~~~~~~~~i~~~c~------glPlal~~~g~-~L-----~~~--~~~~~w~~~~~~~~-~ 123 (839)
.+|+++++. .. --.+....+++.++ |.|..+..+.. +. .+. .+.+.+..+..... .
T Consensus 217 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~ 296 (412)
T 1w5s_A 217 SRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAA 296 (412)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 999884431 11 12467788999999 99965444432 21 122 24455655554322 1
Q ss_pred ccCCCCCcchhc--hhhhhhhhccCC--CCcccChhHHHHHHHHcC--CCcccCCCCCHHHHHHHHHHHHHhcccccccc
Q 036119 124 NLRDSDILPALR--LKQCFAYSSLFP--KDYEFQDEEIILLWTAEG--FLDQEYNGRKMEDLGREFVRELHSRSLFQQSS 197 (839)
Q Consensus 124 ~~~~~~~~~~l~--~k~~f~~~a~f~--~~~~~~~~~li~~w~~~g--~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 197 (839)
..-. ..+..+. .+.++..+|.+. .+..+...++...+.... ... ....-......++++|.+.+++....
T Consensus 297 ~~~~-~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 297 SIQT-HELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN---VKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp ---C-CSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC---CCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred chHH-HHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC---CCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 1100 1111222 455555566443 223445555554442110 110 00011244567899999999997653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.012 Score=57.51 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=67.6
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHH-HHh-CCCCeEeCCCCCcccccCcCC-------C
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA-ERM-GADPVYQLKELSDDDCLDFTR-------H 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~-~~~-~~~~~~~~~~l~~~~~~~~~~-------~ 77 (839)
.+++.+||+||++.-+...++.+...+.....+.++|+||+..... ... .-...+++++++.+|...+.. .
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 4578999999996655566777777666556678999999775422 111 223589999999998873221 1
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHH
Q 036119 78 QSLKEVGEQIVIKCGGLPLAAKTLGG 103 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~glPlal~~~g~ 103 (839)
.--.+....++++|+|.|..+..+..
T Consensus 204 ~~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 204 AHEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11245678899999999988776654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.12 Score=44.38 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=33.4
Q ss_pred EEEeCCCcccc--cccccccCcCcCcEeEecCccccccccCC-CCCCccccCCCccEEeccCc
Q 036119 298 VFSLCGYRNIF--NLPNEIGNLKHLRCLNLSRTKWEEWIPCG-AGQEVDEVFPKLRTLSLDNC 357 (839)
Q Consensus 298 ~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~~~~~~l~~L~~L~L~~~ 357 (839)
+++.+++. ++ .+|..+. .+|++|+|++|.|.. +|.+ +.. +++|++|+|++|
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~l~~-l~~~~f~~-----l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNNLTA-LPPGLLDA-----LPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSCCSS-CCTTTGGG-----CTTCCEEECCSS
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCcCCc-cChhhhhh-----ccccCEEEecCC
Confidence 56677776 66 7776432 467888888888744 4433 233 777778877776
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.16 Score=48.52 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=60.4
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHH-HHh-CCCCeEeCCCCCcccccCcCC-------Cc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA-ERM-GADPVYQLKELSDDDCLDFTR-------HQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~-~~~-~~~~~~~~~~l~~~~~~~~~~-------~~ 78 (839)
+++.+||+||++.-....++.+...+.....+.++|+||+...-. ... .-...+++++++.++...+.. ..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 678999999996654455666666555556678999999875421 111 112389999999888763211 11
Q ss_pred hHHHHHHHHHHHhCCChHHHHH
Q 036119 79 SLKEVGEQIVIKCGGLPLAAKT 100 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glPlal~~ 100 (839)
--.+....+++.++|.|-.+..
T Consensus 181 ~~~~~~~~l~~~~~g~~r~l~~ 202 (226)
T 2chg_A 181 ITEDGLEALIYISGGDFRKAIN 202 (226)
T ss_dssp BCHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 1235666788888998875443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=0.19 Score=43.13 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=13.8
Q ss_pred CcceEecccccccccccccCccccccccccccccc
Q 036119 684 KLTELTIYDCENLKALPNCMHNLTSLLNLKISECP 718 (839)
Q Consensus 684 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 718 (839)
+|+.|+|++|.+...-+..|..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555443222112223334444444444443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=90.87 E-value=0.092 Score=48.58 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=16.1
Q ss_pred CCcceEecccccccc----cccccCcccccccccccccc
Q 036119 683 TKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 683 ~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~ 717 (839)
++|++|+|++|.+.. .+...+..-+.|++|+|++|
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 455555555554321 12233334445555555543
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.32 E-value=0.46 Score=48.42 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHH-HHHh-CCCCeEeCCCCCcccccCcCC-------C
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVV-AERM-GADPVYQLKELSDDDCLDFTR-------H 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~~-~~~~~~~~~~l~~~~~~~~~~-------~ 77 (839)
.+++.+||+||++.-....++.+...+....+++++|+||+...- .... .-...+++++++.++...... .
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999765445566666655555567889998877532 2222 122489999999998763221 1
Q ss_pred chHHHHHHHHHHHhCCChH-HHHHHHH
Q 036119 78 QSLKEVGEQIVIKCGGLPL-AAKTLGG 103 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~glPl-al~~~g~ 103 (839)
.--.+....+++.++|.|- |+..+..
T Consensus 185 ~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 185 KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1123567789999999994 4555543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=88.26 E-value=0.38 Score=44.46 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHhcCCCceeEEEeCCC-ccccc-----ccccccCcCcCcEeEecCccc
Q 036119 287 QMLLNHLPRLRVFSLCGY-RNIFN-----LPNEIGNLKHLRCLNLSRTKW 330 (839)
Q Consensus 287 ~~~~~~l~~L~~L~L~~~-~~~~~-----lp~~i~~L~~L~~L~L~~~~~ 330 (839)
...+.+-+.|+.|+|+++ . ++. +-+.+..-..|+.|+|++|.+
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred HHHHhcCCCccEEECCCCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 334444455555555553 3 322 223344445555555555554
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=87.75 E-value=0.65 Score=47.32 Aligned_cols=184 Identities=13% Similarity=0.027 Sum_probs=89.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCC------------------CCCCEEEEEecChHHH-HHh--CCCCeEeCCCC
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAG------------------AAGSKIVVTTRNLVVA-ERM--GADPVYQLKEL 66 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~------------------~~gs~iivTtr~~~v~-~~~--~~~~~~~~~~l 66 (839)
.+..+|++||+..-.....+.+...+... .++.++|.||...... ... +....++++++
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 36679999999554333333333222111 1345677777654321 111 12347899999
Q ss_pred CcccccCcC-------CCchHHHHHHHHHHHhCCChHHHHHHHHHhc------CC--CChhHHHHHHhccccccCCCCCc
Q 036119 67 SDDDCLDFT-------RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLR------GR--DDPRDWEFVLKTDIWNLRDSDIL 131 (839)
Q Consensus 67 ~~~~~~~~~-------~~~~~~~~~~~i~~~c~glPlal~~~g~~L~------~~--~~~~~w~~~~~~~~~~~~~~~~~ 131 (839)
+.+|...+. ...--.+....+++++.|.|-.+..+...+. +. -+.+....++.... .... ..
T Consensus 169 ~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~--~~~~-~l 245 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG--LDEL-GL 245 (324)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT--CCTT-CC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--cccc-CC
Confidence 988865211 1111246678899999999987765544332 11 24455555544211 0000 00
Q ss_pred chhchhhhhhhhc-cCCCC----------cccChhHH----HHHHHHcCCCcccCCCCCHHHHHHHHHH-HHHhcccccc
Q 036119 132 PALRLKQCFAYSS-LFPKD----------YEFQDEEI----ILLWTAEGFLDQEYNGRKMEDLGREFVR-ELHSRSLFQQ 195 (839)
Q Consensus 132 ~~l~~k~~f~~~a-~f~~~----------~~~~~~~l----i~~w~~~g~~~~~~~~~~~e~~~~~~~~-~L~~~~ll~~ 195 (839)
+.. .+..+...+ .|..+ ..+.+..+ -++-+..|++.....+..+.+.|.+|++ ++.+|+++|+
T Consensus 246 ~~~-e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 246 EKR-DREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp CHH-HHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred CHH-HHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 000 111111111 11000 12333322 2345667888765666777888888887 8888888874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.74 E-value=2.6 Score=44.00 Aligned_cols=201 Identities=14% Similarity=0.027 Sum_probs=104.1
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCC-C---CCCEEEEEecChHHHHHhC-------CCCeEeCCCCCcccccCcC-
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAG-A---AGSKIVVTTRNLVVAERMG-------ADPVYQLKELSDDDCLDFT- 75 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~-~---~gs~iivTtr~~~v~~~~~-------~~~~~~~~~l~~~~~~~~~- 75 (839)
+++.+||+||++.-+...++.+...+... . .+..||+||++.+...... ....+++++++.++...+.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 56889999999665445556665555432 1 4778888988775443221 1137999999998866221
Q ss_pred -------CCch-HHHHHHHHHHHh---------CCChH-HHHHHHHHhc-----CC--CChhHHHHHHhccccccCCCCC
Q 036119 76 -------RHQS-LKEVGEQIVIKC---------GGLPL-AAKTLGGLLR-----GR--DDPRDWEFVLKTDIWNLRDSDI 130 (839)
Q Consensus 76 -------~~~~-~~~~~~~i~~~c---------~glPl-al~~~g~~L~-----~~--~~~~~w~~~~~~~~~~~~~~~~ 130 (839)
.... -.+....+++++ +|.|- |+..+..+.. +. .+.+....+.... ....+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~----~~~~~ 279 (389)
T 1fnn_A 204 DRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV----LFGIS 279 (389)
T ss_dssp HHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----SCCCC
T ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----hhhhH
Confidence 1111 235677788888 78874 3333332221 22 1334444444321 11112
Q ss_pred cchhc-----hhhhhhhhccCC---CCcccChhHHHHHHHH----cCCCcccCCCCCHHHHHHHHHHHHHhccccccccC
Q 036119 131 LPALR-----LKQCFAYSSLFP---KDYEFQDEEIILLWTA----EGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSY 198 (839)
Q Consensus 131 ~~~l~-----~k~~f~~~a~f~---~~~~~~~~~li~~w~~----~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~ 198 (839)
...++ .+..+..++.+. .+..+....+...+.. .|... --......++.+|.+++++.....
T Consensus 280 ~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 280 EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP------RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC------CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC------CCHHHHHHHHHHHHhCCCeEEeee
Confidence 22222 233333333222 2213444555554433 22111 112456788999999999987532
Q ss_pred -----CCcce-------eecHHHHHHHHHHcc
Q 036119 199 -----DASRF-------VMHDLINDLARWAAG 218 (839)
Q Consensus 199 -----~~~~~-------~mHdlv~~la~~i~~ 218 (839)
..+.+ ..||++..+...+..
T Consensus 354 ~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 354 KRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp ---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred ccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 11111 246777766655443
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=86.09 E-value=1.2 Score=46.69 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=64.9
Q ss_pred hhhcCCCcEEEEEeccCCCCh----hh-HhhhhcccCCCCCCCEEEEEecChHH----HHHh--CCCCeEeCCCCCcccc
Q 036119 3 KKQLFGKKFLLVLDDVWNENY----SR-WSELSCPFGAGAAGSKIVVTTRNLVV----AERM--GADPVYQLKELSDDDC 71 (839)
Q Consensus 3 ~~~l~~k~~LlvLDdv~~~~~----~~-~~~l~~~~~~~~~gs~iivTtr~~~v----~~~~--~~~~~~~~~~l~~~~~ 71 (839)
.+.++.++.+||+||++.-.. .. +..+.... .+.+||+||+.... .... .....+++++++.++.
T Consensus 127 ~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 127 KNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL 202 (384)
T ss_dssp HHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHH
T ss_pred HHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHH
Confidence 345666666999999954211 11 22333222 67899999987531 1111 2223899999999987
Q ss_pred cCcC--------CCch-HHHHHHHHHHHhC---CChH-HHHHHHHHh--c-C--CCChhHHHHHHhc
Q 036119 72 LDFT--------RHQS-LKEVGEQIVIKCG---GLPL-AAKTLGGLL--R-G--RDDPRDWEFVLKT 120 (839)
Q Consensus 72 ~~~~--------~~~~-~~~~~~~i~~~c~---glPl-al~~~g~~L--~-~--~~~~~~w~~~~~~ 120 (839)
..+. .... -.+....++++++ |.|- |+..+..+. . + .-+.++++.++..
T Consensus 203 ~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 203 KFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 7221 1111 1255667777777 8876 444443322 1 2 2367777777664
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=82.71 E-value=2.1 Score=43.45 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=60.8
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHH-HHHhC-CCCeEeCCCCCcccccCcC-------CCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVV-AERMG-ADPVYQLKELSDDDCLDFT-------RHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~~~-~~~~~~~~~l~~~~~~~~~-------~~~ 78 (839)
+++.+||+||++.-....++.+...+.....+.++|+||....- ..... -...++++++++++..... ...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 67889999999765555666676666555667899999876532 11111 1137899999988866211 111
Q ss_pred hHHHHHHHHHHHhCCChHHHHHH
Q 036119 79 SLKEVGEQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glPlal~~~ 101 (839)
--.+....+++.++|.|-.+..+
T Consensus 189 ~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 189 LTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp ECHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHH
Confidence 12356677888899998755443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 839 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 2e-18 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-05 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 84.5 bits (208), Expect = 2e-18
Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 28/159 (17%)
Query: 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGAD-PV 60
+ L V DDV E RW A + +VTTR++ ++
Sbjct: 128 CNALIDRPNTLFVFDDVVQEETIRW--------AQELRLRCLVTTRDVEISNAASQTCEF 179
Query: 61 YQLKELSDDDCLDFTRHQSLKE--------VGEQIVIKCGGLPLAAKTLGGLLRGRDDPR 112
++ L D+C DF + V + + G P + +
Sbjct: 180 IEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEK 239
Query: 113 DWEFVLKTDIWNLRDSDILPALR---------LKQCFAY 142
+ L + + + L++C
Sbjct: 240 MAQ--LNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 276
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 4e-05
Identities = 36/250 (14%), Positives = 79/250 (31%), Gaps = 21/250 (8%)
Query: 597 YCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLH 656
CS+L L +LP L +++ T +++ L+NL +L +
Sbjct: 16 QCSDLGLEKVPKDLPPDTALLDLQNNKI----------TEIKDGDFKNLKNLHTLILINN 65
Query: 657 NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNL--------TS 708
+ + LE +L E + L+ N + +
Sbjct: 66 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125
Query: 709 LLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPD 768
++ +++ P S E+G ++ L + + + SL + G
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKIT 184
Query: 769 LVSPPPFP--ASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSL 826
V +L L +S + N L+ L L++ +K K +
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244
Query: 827 LQLHIYACPL 836
++++ +
Sbjct: 245 QVVYLHNNNI 254
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 839 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.82 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.76 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.75 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.71 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.66 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.64 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.62 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.59 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.56 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.55 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.51 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.48 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.39 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.38 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.33 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.32 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.31 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.29 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.29 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.27 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.24 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.24 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.13 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.09 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.04 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.04 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.01 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.99 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.9 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.88 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.56 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.54 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.5 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.45 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.38 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.3 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.34 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.15 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.77 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.65 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 94.01 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 92.96 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.82 E-value=6.3e-19 Score=188.03 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=52.5
Q ss_pred CCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC--cCCCC
Q 036119 293 LPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP--RRLLL 370 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp--~~l~~ 370 (839)
+.+|++|+++++. +..++ .++.+++|++|++++|++.+ +|. +.. +++|++|++++| .+. .++ ..+++
T Consensus 43 l~~l~~L~l~~~~-I~~l~-gl~~L~nL~~L~Ls~N~l~~-l~~-l~~-----L~~L~~L~L~~n-~i~-~i~~l~~l~~ 111 (384)
T d2omza2 43 LDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNNQLTD-ITP-LKN-----LTKLVDILMNNN-QIA-DITPLANLTN 111 (384)
T ss_dssp HTTCCEEECCSSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTT-----CTTCCEEECCSS-CCC-CCGGGTTCTT
T ss_pred hCCCCEEECCCCC-CCCcc-ccccCCCCCEEeCcCCcCCC-Ccc-ccC-----Cccccccccccc-ccc-cccccccccc
Confidence 4568888888888 77774 57888888888888888754 332 444 888888888886 454 233 24555
Q ss_pred ccEEeecccC
Q 036119 371 LETLDITSCD 380 (839)
Q Consensus 371 L~~L~l~~~~ 380 (839)
|+.|++.++.
T Consensus 112 L~~L~~~~~~ 121 (384)
T d2omza2 112 LTGLTLFNNQ 121 (384)
T ss_dssp CCEEECCSSC
T ss_pred cccccccccc
Confidence 5565555443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=1.3e-17 Score=177.79 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=97.4
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++++.+++++|.+.+..| ...+++|++|++++|... .++ .+..+++|+.|++++|...+ ++ .+..+++|+.|++
T Consensus 197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l 270 (384)
T d2omza2 197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKL 270 (384)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-hhhcccccchhccccCccCC-CC-cccccccCCEeec
Confidence 444555555544443322 223445555555555332 122 23344455555555554322 22 1444555555555
Q ss_pred ccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCC--CCCcccceeeecCCCCCCc
Q 036119 715 SECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPP--PFPASLTNLWISDMPDLES 792 (839)
Q Consensus 715 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~ 792 (839)
++|++.. ++....++.++.++++.|.+.+.. ....+++++.++++++. +..++ ..+++|++|++++|.. +.
T Consensus 271 ~~~~l~~-~~~~~~~~~l~~l~~~~n~l~~~~---~~~~~~~l~~L~ls~n~--l~~l~~l~~l~~L~~L~L~~n~l-~~ 343 (384)
T d2omza2 271 GANQISN-ISPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNN--ISDISPVSSLTKLQRLFFANNKV-SD 343 (384)
T ss_dssp CSSCCCC-CGGGTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSC--CSCCGGGGGCTTCCEEECCSSCC-CC
T ss_pred cCcccCC-CCcccccccccccccccccccccc---ccchhcccCeEECCCCC--CCCCcccccCCCCCEEECCCCCC-CC
Confidence 5554432 222233445555555555544321 12444555555554431 11211 1345788889988854 45
Q ss_pred cccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCC
Q 036119 793 ISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYAC 834 (839)
Q Consensus 793 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c 834 (839)
++ .+..+++|++|++++| +++.+++.+-.++|++|+++++
T Consensus 344 l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 344 VS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp CG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred Ch-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence 55 5778999999999988 7777765444468999998875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.76 E-value=3.5e-19 Score=177.90 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=101.3
Q ss_pred hhhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCCC-CeEeCCCCCcccccCcCC----
Q 036119 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGAD-PVYQLKELSDDDCLDFTR---- 76 (839)
Q Consensus 2 l~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~-~~~~~~~l~~~~~~~~~~---- 76 (839)
+++.+.+||+|+||||||+. ++|+.+. ..|||||||||+++|+..+... ..|+|++|+++|||+++.
T Consensus 128 ~~~~L~~kr~LlVLDDv~~~--~~~~~~~------~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 199 (277)
T d2a5yb3 128 CNALIDRPNTLFVFDDVVQE--ETIRWAQ------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGM 199 (277)
T ss_dssp HHHHTTSTTEEEEEEEECCH--HHHHHHH------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred HHHHhccCCeeEecchhhHH--hhhhhhc------ccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhC
Confidence 45678899999999999986 4565432 3589999999999999887665 689999999999994431
Q ss_pred ----CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCCCCCcchhc---------hhhhhhh
Q 036119 77 ----HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRDSDILPALR---------LKQCFAY 142 (839)
Q Consensus 77 ----~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~---------~k~~f~~ 142 (839)
.+..++++.+||++|+|+|||++++|+.|+++ +.++|.+..+... .-...++...++ +|.||.+
T Consensus 200 ~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~L~-~~~~~~v~~il~~sY~~L~~~lk~c~~~ 276 (277)
T d2a5yb3 200 PMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLE-SRGLVGVECITPYSYKSLAMALQRCVEV 276 (277)
T ss_dssp CCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHH-HHCSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred CccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcccHHHHHHHHh
Confidence 24467899999999999999999999999988 7888887665421 111234555444 7888864
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.75 E-value=1e-18 Score=180.16 Aligned_cols=249 Identities=16% Similarity=0.147 Sum_probs=185.2
Q ss_pred CceEEEeccCCCCC--ccccccCCCCCccEEeecCCCC-CcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 466 RLQFLELSCCEGLT--RLPQALLTLSSLTEMRIHDCAS-LVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 466 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~-~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+++.|+++++.+.+ .+|..++++++|++|++++|+. .+.+|. ...+++|++|++++|......+..+ ..++.|+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~--~~~~~L~ 128 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccc--cchhhhc
Confidence 68999999987765 5788999999999999997544 446765 4568999999999987655555443 4467888
Q ss_pred eEecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEec
Q 036119 542 CLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIE 620 (839)
Q Consensus 542 ~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 620 (839)
.+++++|.....+| .+..++.++.++++++.....+|..... ....++.+.+.
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~--------------------------l~~l~~~l~~~ 182 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS--------------------------FSKLFTSMTIS 182 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC--------------------------CCTTCCEEECC
T ss_pred ccccccccccccCchhhccCcccceeecccccccccccccccc--------------------------ccccccccccc
Confidence 88888887766665 3456677777777777544445443321 11223555555
Q ss_pred cCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc
Q 036119 621 DCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP 700 (839)
Q Consensus 621 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp 700 (839)
+|......+..+.......+++..+...+.+|..+..+++|+.+++++|.....+| .+..+++|+.|++++|+..+.+|
T Consensus 183 ~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP 261 (313)
T d1ogqa_ 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp SSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCC
Confidence 55444444444455566678888888888888888889999999999987765554 46667899999999998888899
Q ss_pred ccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 701 NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 701 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
..+.++++|++|++++|.+.+.+|..+.+++|+.+++++|+..
T Consensus 262 ~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred hHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence 9999999999999999988878887777888999999988744
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.71 E-value=1.9e-17 Score=170.51 Aligned_cols=250 Identities=15% Similarity=0.094 Sum_probs=145.7
Q ss_pred ccceEecccCCCCc--CCC-CCCCCCCccEEEEcCCCCCc-CCchhhhcccCCCCcceEEEeecCCcccccCCCCccccc
Q 036119 539 SLECLAIRSCNSLV--SFP-EVALPSQLRTIIIGGCHALE-SLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSL 614 (839)
Q Consensus 539 ~L~~L~l~~~~~l~--~~~-~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L 614 (839)
.++.|+++++.... .+| .+..+++|++|+++++..+. .+|..+... ++|++|++++|......+.......+|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L---~~L~~L~Ls~N~l~~~~~~~~~~~~~L 127 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL---TQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC---TTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc---cccchhhhccccccccccccccchhhh
Confidence 57788888775543 233 45667778888887644443 566554332 367777777765444333323334456
Q ss_pred ceeEeccCCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCC-CeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 615 KYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHL-QKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 615 ~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+.+++..|.....++..+. .+.++.+++++|.+.+.+|..+..+.++ +.+++++|......|..+..+ +...+++++
T Consensus 128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~ 206 (313)
T d1ogqa_ 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCS
T ss_pred cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 6666666655554444333 3566666666666666666666555554 556666665554444444333 334566666
Q ss_pred ccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 772 (839)
+...+.+|..+..+++|+.+++++|.+...++..+.+++|+.|++++|++.+.+|.+ +..
T Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~-l~~------------------- 266 (313)
T d1ogqa_ 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQ------------------- 266 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGG-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChH-HhC-------------------
Confidence 666666666666666666666666666555554455666666666666666555442 111
Q ss_pred CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccc
Q 036119 773 PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKY 816 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~ 816 (839)
+++|+.|++++|...+.+| .++++++|+.+++++|+.+..
T Consensus 267 ---L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 267 ---LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ---CTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEES
T ss_pred ---CCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccccC
Confidence 2356666666676665666 345667777777777765544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.66 E-value=1.3e-14 Score=151.98 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=67.3
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccE
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLET 373 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~ 373 (839)
.++++|+|+++. ++.+|+. +++|++|++++|++. .+|.. +.+|+.|++++| .++ .++.-.+.|++
T Consensus 38 ~~l~~LdLs~~~-L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~--------~~~L~~L~l~~n-~l~-~l~~lp~~L~~ 102 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSSLPEL---PPHLESLVASCNSLT-ELPEL--------PQSLKSLLVDNN-NLK-ALSDLPPLLEY 102 (353)
T ss_dssp HTCSEEECTTSC-CSCCCSC---CTTCSEEECCSSCCS-SCCCC--------CTTCCEEECCSS-CCS-CCCSCCTTCCE
T ss_pred cCCCEEEeCCCC-CCCCCCC---CCCCCEEECCCCCCc-ccccc--------hhhhhhhhhhhc-ccc-hhhhhcccccc
Confidence 368999999999 8899974 578999999999985 56753 567999999986 555 55544456777
Q ss_pred EeecccC--cccccCCCCCCccEEEecccc
Q 036119 374 LDITSCD--QLLVTIQCLPALSELQIDGCK 401 (839)
Q Consensus 374 L~l~~~~--~l~~~l~~l~~L~~L~l~~~~ 401 (839)
|+++++. .+| .++.+++|+.|++.++.
T Consensus 103 L~L~~n~l~~lp-~~~~l~~L~~L~l~~~~ 131 (353)
T d1jl5a_ 103 LGVSNNQLEKLP-ELQNSSFLKIIDVDNNS 131 (353)
T ss_dssp EECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred cccccccccccc-chhhhccceeecccccc
Confidence 7777665 333 34666777777766654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=1.2e-14 Score=148.47 Aligned_cols=245 Identities=14% Similarity=0.120 Sum_probs=157.3
Q ss_pred CcCCceEEEeccCCCCCcccc-ccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQ-ALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
+|++++.|++++|.+ ..+|. ++.++++|++|++++|......+. ...+++|+.|++++|. ++.++.. ..+.+
T Consensus 29 l~~~l~~L~Ls~N~i-~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~----~~~~l 102 (305)
T d1xkua_ 29 LPPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK----MPKTL 102 (305)
T ss_dssp CCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS----CCTTC
T ss_pred CCCCCCEEECcCCcC-CCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccc----hhhhh
Confidence 457888888888877 45554 678888888888888865543332 3346777777777764 4444432 22455
Q ss_pred ceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccC--CCCcccccceeE
Q 036119 541 ECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSR--NGNLPQSLKYLK 618 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~L~~L~ 618 (839)
..|.+.++... .++...+... .....+....+........ .....++|+.+.
T Consensus 103 ~~L~~~~n~l~------------------------~l~~~~~~~~--~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~ 156 (305)
T d1xkua_ 103 QELRVHENEIT------------------------KVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156 (305)
T ss_dssp CEEECCSSCCC------------------------BBCHHHHTTC--TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred hhhhccccchh------------------------hhhhhhhhcc--ccccccccccccccccCCCccccccccccCccc
Confidence 66665554322 2222111111 1233333333222111111 011234567777
Q ss_pred eccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccc
Q 036119 619 IEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA 698 (839)
Q Consensus 619 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 698 (839)
+.+|... .++.. ..++++.|++++|......+..+..++.++.|++++|......+..+..+++|++|++++|+ +..
T Consensus 157 l~~n~l~-~l~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~ 233 (305)
T d1xkua_ 157 IADTNIT-TIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVK 233 (305)
T ss_dssp CCSSCCC-SCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSS
T ss_pred cccCCcc-ccCcc-cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc-ccc
Confidence 7766432 23322 24678888888888877777788889999999999997776666677788899999999984 567
Q ss_pred ccccCcccccccccccccccCCccCCCC--------CCCCCcceEEecCCCCC
Q 036119 699 LPNCMHNLTSLLNLKISECPSVVSFPED--------GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 699 lp~~l~~l~~L~~L~l~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~ 743 (839)
+|.++..+++|++|++++|++. .++.. ..+++|+.|++++|++.
T Consensus 234 lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 234 VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 8888999999999999998765 44322 34578999999999875
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.62 E-value=2.8e-14 Score=145.78 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=39.6
Q ss_pred ccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcc
Q 036119 655 LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQ 733 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~ 733 (839)
+..+++|+.+++++|... .+|... +++|++|++++|......+..+.+++.++.|++++|.+....+.. ..+++|+
T Consensus 146 ~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~ 222 (305)
T d1xkua_ 146 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222 (305)
T ss_dssp GGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred cccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccce
Confidence 334455555555554332 233221 235555555555444444444555555555555555443322222 3344555
Q ss_pred eEEecCCCCC
Q 036119 734 SLDVHDLKIS 743 (839)
Q Consensus 734 ~L~l~~~~~~ 743 (839)
+|++++|++.
T Consensus 223 ~L~L~~N~L~ 232 (305)
T d1xkua_ 223 ELHLNNNKLV 232 (305)
T ss_dssp EEECCSSCCS
T ss_pred eeeccccccc
Confidence 5555555444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.59 E-value=3.5e-13 Score=140.92 Aligned_cols=314 Identities=24% Similarity=0.290 Sum_probs=157.9
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEec
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 545 (839)
++++|+++++.+ +.+|+. .++|++|++++| .++.+|. .+.+|+.|++.++. ++.++. -.+.|++|++
T Consensus 39 ~l~~LdLs~~~L-~~lp~~---~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~l~~n~-l~~l~~-----lp~~L~~L~L 105 (353)
T d1jl5a_ 39 QAHELELNNLGL-SSLPEL---PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNNN-LKALSD-----LPPLLEYLGV 105 (353)
T ss_dssp TCSEEECTTSCC-SCCCSC---CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCCS-----CCTTCCEEEC
T ss_pred CCCEEEeCCCCC-CCCCCC---CCCCCEEECCCC-CCccccc--chhhhhhhhhhhcc-cchhhh-----hccccccccc
Confidence 455566655554 345532 345566666554 3344443 24456666665553 222221 1134666666
Q ss_pred ccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCc
Q 036119 546 RSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKL 625 (839)
Q Consensus 546 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l 625 (839)
++|. +..+|....+++|+.|++.++.. ...+.. ...+..+.+.++....... ...++.++.+.+.++...
T Consensus 106 ~~n~-l~~lp~~~~l~~L~~L~l~~~~~-~~~~~~------~~~l~~l~~~~~~~~~~~~--l~~l~~l~~L~l~~n~~~ 175 (353)
T d1jl5a_ 106 SNNQ-LEKLPELQNSSFLKIIDVDNNSL-KKLPDL------PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLK 175 (353)
T ss_dssp CSSC-CSSCCCCTTCTTCCEEECCSSCC-SCCCCC------CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred cccc-cccccchhhhccceeeccccccc-cccccc------cccccchhhcccccccccc--ccccccceeccccccccc
Confidence 6653 34555555566666666665532 222111 1244455444433322111 112345666666655432
Q ss_pred hhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcc
Q 036119 626 ESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHN 705 (839)
Q Consensus 626 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~ 705 (839)
... . .....+.+....+.. ..++ ....++.|+.+++++|... .++. ...++..+.+.++.... .+..
T Consensus 176 ~~~-~--~~~~~~~l~~~~~~~-~~~~-~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~-~~~~--- 242 (353)
T d1jl5a_ 176 KLP-D--LPLSLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTD-LPEL--- 242 (353)
T ss_dssp SCC-C--CCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred ccc-c--ccccccccccccccc-cccc-ccccccccccccccccccc-cccc---ccccccccccccccccc-cccc---
Confidence 211 1 011222333322222 2222 3456777788887777443 3332 22456666666664332 2221
Q ss_pred cccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeec
Q 036119 706 LTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWIS 785 (839)
Q Consensus 706 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~ 785 (839)
.+++...++..+.... ++ ..+......++..+.+.+. ...+++|++|++++| .+..+|..+++|+.|+++
T Consensus 243 ~~~l~~~~~~~~~~~~-l~--~l~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~Ls~N--~l~~lp~~~~~L~~L~L~ 312 (353)
T d1jl5a_ 243 PQSLTFLDVSENIFSG-LS--ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNN--KLIELPALPPRLERLIAS 312 (353)
T ss_dssp CTTCCEEECCSSCCSE-ES--CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSS--CCSCCCCCCTTCCEEECC
T ss_pred cccccccccccccccc-cc--cccchhcccccccCccccc-----cccCCCCCEEECCCC--ccCccccccCCCCEEECC
Confidence 1223333333222211 11 1123334445555444331 123456666666653 344566666789999999
Q ss_pred CCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeec
Q 036119 786 DMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIY 832 (839)
Q Consensus 786 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~ 832 (839)
+|.. +.+|. .+++|++|++++|+ ++.+|. +|.+|+.|.+.
T Consensus 313 ~N~L-~~l~~---~~~~L~~L~L~~N~-L~~lp~--~~~~L~~L~~~ 352 (353)
T d1jl5a_ 313 FNHL-AEVPE---LPQNLKQLHVEYNP-LREFPD--IPESVEDLRMN 352 (353)
T ss_dssp SSCC-SCCCC---CCTTCCEEECCSSC-CSSCCC--CCTTCCEEECC
T ss_pred CCcC-Ccccc---ccCCCCEEECcCCc-CCCCCc--cccccCeeECc
Confidence 9864 56774 35689999999994 899986 78889998875
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.8e-14 Score=141.20 Aligned_cols=190 Identities=14% Similarity=-0.007 Sum_probs=127.4
Q ss_pred cceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccc
Q 036119 614 LKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC 693 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 693 (839)
+.+.+.+++ .++.+|..+ .++++.|+|++|++.+..+..+.++++|++|++++|.+. .++. +..+++|++|++++|
T Consensus 12 ~~~v~C~~~-~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N 87 (266)
T d1p9ag_ 12 HLEVNCDKR-NLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHN 87 (266)
T ss_dssp CCEEECTTS-CCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSS
T ss_pred CeEEEccCC-CCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccccccccccc
Confidence 444444433 355566543 268999999999987766677889999999999999654 4553 456789999999998
Q ss_pred cccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC
Q 036119 694 ENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772 (839)
Q Consensus 694 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 772 (839)
+ +...+..+..+++|+.|++++|.+....+.. ..+.++++|++++|.+.... ...+..+++++.+++++|.. ..+
T Consensus 88 ~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l--~~~ 163 (266)
T d1p9ag_ 88 Q-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNL--TEL 163 (266)
T ss_dssp C-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC--SCC
T ss_pred c-ccccccccccccccccccccccccceeeccccccccccccccccccccceec-cccccccccchhcccccccc--ccc
Confidence 6 4556778889999999999999876544433 56789999999999887533 33345566666666655422 122
Q ss_pred C----CCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 773 P----PFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 773 ~----~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
+ ..+++|+.|++++|.. +.+|..+..+++|+.|++++||
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L-~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCC
T ss_pred CccccccccccceeecccCCC-cccChhHCCCCCCCEEEecCCC
Confidence 1 1244566666666643 3555555555666666666554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.7e-14 Score=144.08 Aligned_cols=207 Identities=16% Similarity=0.105 Sum_probs=99.1
Q ss_pred cccccCCCCcccccceeEeccCCCchhhhh-hc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCccc-CC
Q 036119 601 LALLSRNGNLPQSLKYLKIEDCSKLESLAE-RL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESF-PE 677 (839)
Q Consensus 601 l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~ 677 (839)
++.+|. .+|+++++|++++|.. +.++. .+ ..++|++|++++|++....+..+..++.++.+.+..+.....+ +.
T Consensus 23 L~~iP~--~ip~~~~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 99 (284)
T d1ozna_ 23 LQAVPV--GIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (284)
T ss_dssp CSSCCT--TCCTTCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCccCC--CCCCCCCEEECcCCcC-CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccch
Confidence 444443 3455666666666543 23322 22 2255555555555555444444445555555555444333333 33
Q ss_pred CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccc
Q 036119 678 EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTS 756 (839)
Q Consensus 678 ~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 756 (839)
.+..+++|++|++++|......+..+...++|+.+++++|.+....+.. ...++|++|++++|.+.+..+ ..+..++
T Consensus 100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~~f~~l~- 177 (284)
T d1ozna_ 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLH- 177 (284)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCT-
T ss_pred hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-hhhcccc-
Confidence 3444555555555555443333344455555555555555554322222 334555555555555543222 1223334
Q ss_pred cceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCC--CCcccceeeecCC
Q 036119 757 LRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQG--LPKSLLQLHIYAC 834 (839)
Q Consensus 757 L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~i~~c 834 (839)
+|+.+++++|......|..+..+++|++|++++| .+..+++.. -.++|++|+++++
T Consensus 178 ---------------------~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 178 ---------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp ---------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ---------------------ccchhhhhhccccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCC
Confidence 4555555555554444555555555555555555 344443321 1234555555554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.2e-13 Score=139.10 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=81.6
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
.+|+.+++++|.+.+..+..+..+++|+.|++++|......+..+..+++|+.+++++|...+..|..|..+++|+.|++
T Consensus 129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l 208 (284)
T d1ozna_ 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (284)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence 55666666666665555556777888888888888765555566677888888888888777777888888888888888
Q ss_pred ccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 715 SECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 715 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
++|.+....+.. ..+++|+.|++++|++.
T Consensus 209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccccccccccccccccCEEEecCCCCC
Confidence 888876544433 56788888888888776
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.7e-13 Score=134.89 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=99.2
Q ss_pred CCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCccee
Q 036119 561 SQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEI 640 (839)
Q Consensus 561 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 640 (839)
++++.|+++++. +..++...+... ++|++|++++|. ++.++. ...+++|+.|++++|......+.....++|+.|
T Consensus 31 ~~l~~L~Ls~N~-i~~l~~~~f~~l--~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 105 (266)
T d1p9ag_ 31 KDTTILHLSENL-LYTFSLATLMPY--TRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (266)
T ss_dssp TTCCEEECTTSC-CSEEEGGGGTTC--TTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred cCCCEEECcCCc-CCCcCHHHhhcc--cccccccccccc-cccccc-ccccccccccccccccccccccccccccccccc
Confidence 355555555552 334443333221 345555555542 333333 223456677777666433222222233666677
Q ss_pred eecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCC
Q 036119 641 SISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 641 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
+++++...+..+..+..++++++|++++|......+..+..+++|+.+++++|+.....+..+..+++|++|+|++|.+.
T Consensus 106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~ 185 (266)
T d1p9ag_ 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (266)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence 77766665555555566777777777777555444444555667777777777655544455666777777777777654
Q ss_pred ccCCCC-CCCCCcceEEecCCCCC
Q 036119 721 VSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 721 ~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
.+|.. ..+++|+.|++++|+..
T Consensus 186 -~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 186 -TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBC
T ss_pred -ccChhHCCCCCCCEEEecCCCCC
Confidence 45543 45667777777777654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.39 E-value=1.1e-12 Score=126.88 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=46.0
Q ss_pred cCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCc
Q 036119 291 NHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNC 357 (839)
Q Consensus 291 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~ 357 (839)
..+.+|++|++.+|. +..++ .+.++++|++|++++|.+.+..| +.. +++|+++++++|
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~-----l~~l~~l~~~~n 95 (227)
T d1h6ua2 38 ADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQITDLAP--LKN-----LTKITELELSGN 95 (227)
T ss_dssp HHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTT-----CCSCCEEECCSC
T ss_pred HHcCCcCEEECCCCC-CCcch-hHhcCCCCcEeecCCceeecccc--ccc-----cccccccccccc
Confidence 345678999999998 88885 58899999999999998865433 333 888999988886
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.38 E-value=1.9e-12 Score=125.29 Aligned_cols=167 Identities=19% Similarity=0.120 Sum_probs=84.3
Q ss_pred ccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcce
Q 036119 655 LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQS 734 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 734 (839)
+.++++|++|++++|......| +..+++|+.+++++|.. +.++ .+..+++|+.+++++|.... ++.....+.++.
T Consensus 59 l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~~ 133 (227)
T d1h6ua2 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLTSTQITD-VTPLAGLSNLQV 133 (227)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECTTSCCCC-CGGGTTCTTCCE
T ss_pred HhcCCCCcEeecCCceeecccc--ccccccccccccccccc-cccc-cccccccccccccccccccc-cchhccccchhh
Confidence 3444444444444443332211 33344444444444432 2222 23444444444444444321 111223344444
Q ss_pred EEecCCCCCCccccccCCCccccceEEEecCCCC-CcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCC
Q 036119 735 LDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPD-LVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPK 813 (839)
Q Consensus 735 L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~ 813 (839)
+.+++|.+.... .....++|+.+.+.++-.. ...+ .-+++|+.|++++|.. +.++ .++.+++|++|++++| +
T Consensus 134 l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~l-~~l~~L~~L~Ls~n~l-~~l~-~l~~l~~L~~L~Ls~N-~ 206 (227)
T d1h6ua2 134 LYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNKI-SDIS-PLASLPNLIEVHLKNN-Q 206 (227)
T ss_dssp EECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCC-CCCG-GGGGCTTCCEEECTTS-C
T ss_pred hhchhhhhchhh---hhccccccccccccccccccchhh-cccccceecccCCCcc-CCCh-hhcCCCCCCEEECcCC-c
Confidence 444444443221 1233344444444432111 0111 1234788888888854 5565 3678899999999998 7
Q ss_pred ccccCCCCCCcccceeeecC
Q 036119 814 LKYFSEQGLPKSLLQLHIYA 833 (839)
Q Consensus 814 l~~l~~~~~~~sL~~L~i~~ 833 (839)
++.+++.+-.++|+.|++++
T Consensus 207 lt~i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 207 ISDVSPLANTSNLFIVTLTN 226 (227)
T ss_dssp CCBCGGGTTCTTCCEEEEEE
T ss_pred CCCCcccccCCCCCEEEeeC
Confidence 88887654456899998864
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.33 E-value=4.1e-12 Score=120.88 Aligned_cols=164 Identities=19% Similarity=0.171 Sum_probs=98.7
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
.+++.|++++|.+... + ++..+++|++|++++|.+.+ ++. +..+++|+.|++++|+ +..+| .+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l 119 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (210)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-ccc-cccCcccccccccccc-ccccc-ccccccccccccc
Confidence 3555566666555432 2 35567777777777775543 332 3456677777777764 34454 3666777777777
Q ss_pred ccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccc
Q 036119 715 SECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS 794 (839)
Q Consensus 715 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 794 (839)
++|... .++....+++|+.+++++|.+..... ... +++|+.+++++|... .++
T Consensus 120 ~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~~~~---~~~----------------------l~~L~~l~l~~n~l~-~i~ 172 (210)
T d1h6ta2 120 EHNGIS-DINGLVHLPQLESLYLGNNKITDITV---LSR----------------------LTKLDTLSLEDNQIS-DIV 172 (210)
T ss_dssp TTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG---GGG----------------------CTTCSEEECCSSCCC-CCG
T ss_pred cccccc-cccccccccccccccccccccccccc---ccc----------------------ccccccccccccccc-ccc
Confidence 777654 33434556677777777776653211 111 235667777777543 343
Q ss_pred cCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecC
Q 036119 795 SIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYA 833 (839)
Q Consensus 795 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~ 833 (839)
.+.++++|+.|++++| .++.++...-.++|++|++++
T Consensus 173 -~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 173 -PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp -GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred -cccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence 2567778888888877 677776533335778877764
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.32 E-value=5.1e-12 Score=120.23 Aligned_cols=76 Identities=22% Similarity=0.218 Sum_probs=51.5
Q ss_pred CCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc--CCCC
Q 036119 293 LPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR--RLLL 370 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~--~l~~ 370 (839)
+..|++|++++|. +..++ .+..+++|++|++++|.+.+ ++. +.. +++|++|++++| .++ .+|. .+++
T Consensus 45 L~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n~i~~-l~~-~~~-----l~~L~~L~l~~n-~i~-~l~~l~~l~~ 113 (210)
T d1h6ta2 45 LNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LAN-----LKNLGWLFLDEN-KVK-DLSSLKDLKK 113 (210)
T ss_dssp HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTT-----CTTCCEEECCSS-CCC-CGGGGTTCTT
T ss_pred hcCccEEECcCCC-CCCch-hHhhCCCCCEEeCCCccccC-ccc-ccc-----Cccccccccccc-ccc-cccccccccc
Confidence 4568888999988 77776 48888999999999998855 332 233 888999998886 555 3432 3344
Q ss_pred ccEEeeccc
Q 036119 371 LETLDITSC 379 (839)
Q Consensus 371 L~~L~l~~~ 379 (839)
|+.|++.++
T Consensus 114 L~~L~l~~~ 122 (210)
T d1h6ta2 114 LKSLSLEHN 122 (210)
T ss_dssp CCEEECTTS
T ss_pred ccccccccc
Confidence 444444433
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.31 E-value=6.5e-12 Score=118.40 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=44.8
Q ss_pred CCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCc
Q 036119 292 HLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNC 357 (839)
Q Consensus 292 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~ 357 (839)
.+.++++|++++|. +..++ .+..+++|++|++++|++.+..| +.. +++|++|++++|
T Consensus 38 ~l~~l~~L~l~~~~-i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~-----l~~L~~L~l~~n 94 (199)
T d2omxa2 38 DLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNNQLTDITP--LKN-----LTKLVDILMNNN 94 (199)
T ss_dssp HHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSS
T ss_pred HhcCCCEEECCCCC-CCCcc-ccccCCCcCcCccccccccCccc--ccC-----Cccccccccccc
Confidence 35678899999988 77775 58888999999999998865432 444 888999998886
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.4e-13 Score=138.07 Aligned_cols=179 Identities=16% Similarity=0.133 Sum_probs=108.4
Q ss_pred cCCCCcceeeecccccccC-ccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccc--ccccCccccc
Q 036119 632 LDNTSLEEISISVLENLKS-LPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA--LPNCMHNLTS 708 (839)
Q Consensus 632 ~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--lp~~l~~l~~ 708 (839)
....+|++|++++|.+... ++..+.++++|++|++++|...+..+..+..+++|++|++++|..++. +.....++++
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~ 122 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence 3446888888888876543 344456788888888888876655555566678888888888866542 2233456788
Q ss_pred ccccccccccCCccCC--CC--CCCCCcceEEecCCC--CCCccccccCCCccccceEEEecCCCCCc--CCCC--CCcc
Q 036119 709 LLNLKISECPSVVSFP--ED--GFPTNLQSLDVHDLK--ISKPLLEWGSNRFTSLRRFTIWGGCPDLV--SPPP--FPAS 778 (839)
Q Consensus 709 L~~L~l~~~~~~~~~~--~~--~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~~~--~~~~ 778 (839)
|++|++++|....... .. ..+++|+.|++++|. +..........++++|+.|++++ |..+. .+.. -+++
T Consensus 123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~-~~~itd~~~~~l~~~~~ 201 (284)
T d2astb2 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD-SVMLKNDCFQEFFQLNY 201 (284)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT-CTTCCGGGGGGGGGCTT
T ss_pred ccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc-ccCCCchhhhhhcccCc
Confidence 8888888886543211 10 235788888888763 22111111123456677777765 33322 1111 2346
Q ss_pred cceeeecCCCCCC-ccccCCCCCCccCeeeccCC
Q 036119 779 LTNLWISDMPDLE-SISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 779 L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c 811 (839)
|++|++++|..++ .....++++++|+.|++++|
T Consensus 202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 7777777765433 22233455667777777666
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2e-11 Score=119.42 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=32.4
Q ss_pred ccceeeecCCCCCCccccC-CCCCCccCeeeccCCCCccccCCCCCC--cccceeeecC
Q 036119 778 SLTNLWISDMPDLESISSI-GENLTSLKTLRLSDCPKLKYFSEQGLP--KSLLQLHIYA 833 (839)
Q Consensus 778 ~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~i~~ 833 (839)
+++++....+..++.+|.. +..+++|+.|++++| +++.+|..++. +.|+.+++++
T Consensus 177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSEES
T ss_pred hhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcCCC
Confidence 4455544444455566543 577888888888877 57777765443 2344444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.27 E-value=1e-11 Score=116.96 Aligned_cols=160 Identities=20% Similarity=0.127 Sum_probs=102.1
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
.++++|++++|.+.. + .++..+++|++|++++|.... ++. +..+++|++|++++|.. ..++ .+.+++.|+.|++
T Consensus 40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCccccccccccccc-cccc-ccccccccccccc
Confidence 567777777776653 2 246677778888887775543 332 56677777777777753 3344 3667777777777
Q ss_pred ccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccc
Q 036119 715 SECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS 794 (839)
Q Consensus 715 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 794 (839)
++|.... ++....+++|+.|++++|.+... +. .. ..++|+.|++++|... .++
T Consensus 114 ~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~--l~----------------------~~~~L~~L~l~~n~l~-~l~ 166 (199)
T d2omxa2 114 FNNQITD-IDPLKNLTNLNRLELSSNTISDI-SA--LS----------------------GLTSLQQLNFSSNQVT-DLK 166 (199)
T ss_dssp CSSCCCC-CGGGTTCTTCSEEECCSSCCCCC-GG--GT----------------------TCTTCSEEECCSSCCC-CCG
T ss_pred ccccccc-ccccchhhhhHHhhhhhhhhccc-cc--cc----------------------cccccccccccccccc-CCc
Confidence 7776653 33334567777777777765431 11 11 1346788888888543 444
Q ss_pred cCCCCCCccCeeeccCCCCccccCCCCCCccccee
Q 036119 795 SIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQL 829 (839)
Q Consensus 795 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L 829 (839)
.++++++|++|++++| +++.++..+-.++|+.|
T Consensus 167 -~l~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 167 -PLANLTTLERLDISSN-KVSDISVLAKLTNLESL 199 (199)
T ss_dssp -GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred -cccCCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence 3678899999999998 67777643223455544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.8e-12 Score=129.88 Aligned_cols=186 Identities=14% Similarity=0.185 Sum_probs=89.3
Q ss_pred CCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCC-CCCCCCCCccEEEEcCCCCCcCCchhhhcccCC
Q 036119 509 ALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSF-PEVALPSQLRTIIIGGCHALESLPEAWMHNELP 587 (839)
Q Consensus 509 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 587 (839)
....+|++|++++|.......... ...+++|++|++++|...... ..+...++|++|++++|..+...........+
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l-~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~- 120 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC- 120 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC-
T ss_pred ccCCCCCEEECCCCccCHHHHHHH-HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH-
Confidence 345677777777765332221111 245677777777777532211 12234457777777777655422111111112
Q ss_pred CCcceEEEeecCCcccccC---CCCcccccceeEeccCCC-chhhhhhcCCCCcceeeecccccccCccccccCCCCCCe
Q 036119 588 ATLEHLEVSYCSNLALLSR---NGNLPQSLKYLKIEDCSK-LESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQK 663 (839)
Q Consensus 588 ~~L~~L~l~~c~~l~~~~~---~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 663 (839)
++|++|++++|..+..... ....+++|+.|++.+|.. +.. ..+.....++++|++
T Consensus 121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~---------------------~~l~~l~~~~~~L~~ 179 (284)
T d2astb2 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------------SDLSTLVRRCPNLVH 179 (284)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH---------------------HHHHHHHHHCTTCSE
T ss_pred Hhccccccccccccccccchhhhcccccccchhhhccccccccc---------------------ccccccccccccccc
Confidence 2455555555544332110 011123455555554421 111 011112234566666
Q ss_pred EEecCCCCC-cccCCCCCCCCCcceEecccccccc-cccccCcccccccccccccc
Q 036119 664 IWIFGCPNL-ESFPEEGLPSTKLTELTIYDCENLK-ALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 664 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~ 717 (839)
|++++|... +.....+..+++|++|++++|..+. .....+.++++|+.|++++|
T Consensus 180 L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 666665433 2333444556666666666664332 22334556666777777666
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.2e-10 Score=113.62 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=48.9
Q ss_pred eEEEeCCCcccccccccccCcCcCcEeEecCccccccccC-CCCCCccccCCCccEEeccCccccccCCCc----CCCCc
Q 036119 297 RVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPC-GAGQEVDEVFPKLRTLSLDNCCKLQGTLPR----RLLLL 371 (839)
Q Consensus 297 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~----~l~~L 371 (839)
++++.++.. +..+|..+. .++++|++++|.+.. +|. .+.. +++|++|++++|.... .+|. .+.++
T Consensus 11 ~~i~c~~~~-l~~iP~~l~--~~l~~L~Ls~n~i~~-l~~~~f~~-----l~~L~~L~ls~n~~~~-~i~~~~f~~l~~l 80 (242)
T d1xwdc1 11 RVFLCQESK-VTEIPSDLP--RNAIELRFVLTKLRV-IQKGAFSG-----FGDLEKIEISQNDVLE-VIEADVFSNLPKL 80 (242)
T ss_dssp SEEEEESCS-CSSCCSCSC--SCCSEEEEESCCCCE-ECTTTTTT-----CTTCCEEEEESCTTCC-EECSSSEESCTTC
T ss_pred CEEEEeCCC-CCCcCCCCC--CCCCEEECcCCcCCc-cChhHhhc-----cchhhhhhhccccccc-eeecccccccccc
Confidence 445555555 555655442 355666666666533 332 2333 5666666666542221 2221 34455
Q ss_pred cEEeecccCc----ccccCCCCCCccEEEeccccc
Q 036119 372 ETLDITSCDQ----LLVTIQCLPALSELQIDGCKR 402 (839)
Q Consensus 372 ~~L~l~~~~~----l~~~l~~l~~L~~L~l~~~~~ 402 (839)
+++.+..+.. .+..+..+++|++|.+.++..
T Consensus 81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l 115 (242)
T d1xwdc1 81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 115 (242)
T ss_dssp CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred ccccccccccccccccccccccccccccccchhhh
Confidence 5555544331 123456677777777777653
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=6.5e-13 Score=144.38 Aligned_cols=110 Identities=17% Similarity=0.068 Sum_probs=63.6
Q ss_pred CCcceeeecccccccCc----cccccCCCCCCeEEecCCCCCcc----cCCCC-CCCCCcceEecccccccc----cccc
Q 036119 635 TSLEEISISVLENLKSL----PADLHNLHHLQKIWIFGCPNLES----FPEEG-LPSTKLTELTIYDCENLK----ALPN 701 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~-~~~~~L~~L~l~~~~~l~----~lp~ 701 (839)
..|+.+++++|.+.... ...+...++|++|++++|++... ++..+ ...+.|++|++++|++.. .++.
T Consensus 312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 391 (460)
T d1z7xw1 312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 391 (460)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence 45666666666554322 12233556788888887765421 22222 134568888888886532 2445
Q ss_pred cCcccccccccccccccCCccCCC----C--CCCCCcceEEecCCCCCC
Q 036119 702 CMHNLTSLLNLKISECPSVVSFPE----D--GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 702 ~l~~l~~L~~L~l~~~~~~~~~~~----~--~~~~~L~~L~l~~~~~~~ 744 (839)
.+..+++|++|++++|++...... . .....|+.|++++|.+..
T Consensus 392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 566677888888888776431110 0 122468888888887763
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.09 E-value=8.9e-11 Score=109.69 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=83.0
Q ss_pred CCcceeeecccccccCc-cccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccc
Q 036119 635 TSLEEISISVLENLKSL-PADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 713 (839)
+++++|+|++|++.+.+ +..+..+++|++|++++|......+..+..+++|++|++++|+.....|..|.++++|++|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 56777777777776544 44567888888888888887777777777888888888888865554455688888888888
Q ss_pred cccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 714 ISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 714 l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
|++|.+....+.. ..+++|++|++++|++..
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccccccCHHHhcCCccccccccccccccc
Confidence 8888876544443 567888888888887763
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1.5e-10 Score=98.73 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=70.4
Q ss_pred eEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc--CCCCccEE
Q 036119 297 RVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR--RLLLLETL 374 (839)
Q Consensus 297 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~--~l~~L~~L 374 (839)
|+|+|++|. +..+|. ++++++|++|++++|.+. .+|.++.. +++|++|++++| .++ .+|. .+++|++|
T Consensus 1 R~L~Ls~n~-l~~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~-----l~~L~~L~l~~N-~i~-~l~~~~~l~~L~~L 70 (124)
T d1dcea3 1 RVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-----LRCLEVLQASDN-ALE-NVDGVANLPRLQEL 70 (124)
T ss_dssp SEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-----CTTCCEEECCSS-CCC-CCGGGTTCSSCCEE
T ss_pred CEEEcCCCC-CCCCcc-cccCCCCCEEECCCCccC-cchhhhhh-----hhcccccccccc-ccc-ccCccccccccCeE
Confidence 577888887 777764 777888888888888774 46655555 778888888875 565 5553 66777888
Q ss_pred eecccC--ccc--ccCCCCCCccEEEeccccce
Q 036119 375 DITSCD--QLL--VTIQCLPALSELQIDGCKRV 403 (839)
Q Consensus 375 ~l~~~~--~l~--~~l~~l~~L~~L~l~~~~~~ 403 (839)
+++++. .++ ..++.+++|++|++++|+..
T Consensus 71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 877776 333 45788899999999998754
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=9.5e-11 Score=109.49 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=84.4
Q ss_pred cccccceeEeccCCCchhhh-hh-cCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcce
Q 036119 610 LPQSLKYLKIEDCSKLESLA-ER-LDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTE 687 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 687 (839)
+|+++++|++++|.....++ .. ...++|+.|++++|.+....+..+..+++|++|++++|++....+..+..+++|++
T Consensus 27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~ 106 (192)
T d1w8aa_ 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence 45677777777776544332 22 23478888888888888777778888899999999998776555666778889999
Q ss_pred EecccccccccccccCcccccccccccccccCCc
Q 036119 688 LTIYDCENLKALPNCMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 688 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 721 (839)
|+|++|++....|..|..+++|++|++++|++..
T Consensus 107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cccCCccccccCHHHhcCCccccccccccccccc
Confidence 9999887655556678888999999999887754
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.8e-12 Score=140.81 Aligned_cols=109 Identities=19% Similarity=0.103 Sum_probs=55.4
Q ss_pred CCcceeeecccccccC----ccccccCCCCCCeEEecCCCCCcccC----C-CCCCCCCcceEecccccccccc----cc
Q 036119 635 TSLEEISISVLENLKS----LPADLHNLHHLQKIWIFGCPNLESFP----E-EGLPSTKLTELTIYDCENLKAL----PN 701 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~~~~~~~L~~L~l~~~~~l~~l----p~ 701 (839)
..++.+++++|.+... ....+...+.++.+++++|+...... . .......|+.+++++|...... ..
T Consensus 255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~ 334 (460)
T d1z7xw1 255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 334 (460)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence 4566666666654322 12233456667777777665432110 0 0112346777777776543321 22
Q ss_pred cCcccccccccccccccCCcc----CCCC--CCCCCcceEEecCCCCC
Q 036119 702 CMHNLTSLLNLKISECPSVVS----FPED--GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 702 ~l~~l~~L~~L~l~~~~~~~~----~~~~--~~~~~L~~L~l~~~~~~ 743 (839)
.+...++|++|++++|++... ++.. ...+.|++|++++|.++
T Consensus 335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 382 (460)
T d1z7xw1 335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 382 (460)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence 233455677777777765321 1110 12355777777777765
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.6e-10 Score=103.89 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=51.5
Q ss_pred hcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
|.++.++|.|+|++|. +..+|..+..+++|++|++++|.+.. ++ ++.. +++|++|++++| .++
T Consensus 14 ~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~-----l~~L~~L~ls~N-~i~ 76 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-LD-GFPL-----LRRLKTLLVNNN-RIC 76 (162)
T ss_dssp EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCE-EC-CCCC-----CSSCCEEECCSS-CCC
T ss_pred ccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCCCCc-cC-Cccc-----Ccchhhhhcccc-ccc
Confidence 5677789999999999 89998777889999999999999854 43 3444 889999999986 555
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=7.1e-10 Score=94.38 Aligned_cols=101 Identities=13% Similarity=0.016 Sum_probs=73.7
Q ss_pred ceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccc
Q 036119 638 EEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 638 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 717 (839)
+.|++++|+++ .++ .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+ ..+| .+..+++|+.|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccc-cccC-ccccccccCeEECCCC
Confidence 35777777775 333 4678888888888888654 5776677788888888888754 4555 4788888888888888
Q ss_pred cCCccCCC---CCCCCCcceEEecCCCCCC
Q 036119 718 PSVVSFPE---DGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 718 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~ 744 (839)
++.. ++. ...+++|++|++++|++..
T Consensus 76 ~i~~-~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCS-SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCC-CCCchhhcCCCCCCEEECCCCcCCc
Confidence 7753 332 2567888888888888763
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=4.3e-10 Score=101.05 Aligned_cols=104 Identities=11% Similarity=-0.012 Sum_probs=62.5
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~ 713 (839)
.++++|++++|++.. ++..+..+++|+.|++++|.+. .++ .+..+++|++|++++|+.. .+|+ .+..+++|+.|+
T Consensus 18 ~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 18 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELI 93 (162)
T ss_dssp TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEE
T ss_pred CcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccccccce
Confidence 456666666666543 3444456677777777777544 343 3556677777777777543 3433 345677777777
Q ss_pred cccccCCccCCC---CCCCCCcceEEecCCCCC
Q 036119 714 ISECPSVVSFPE---DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 714 l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~ 743 (839)
+++|++.. ++. ...+++|++|++++|++.
T Consensus 94 L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 94 LTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred eccccccc-cccccccccccccchhhcCCCccc
Confidence 77776542 221 245667777777777664
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.1e-07 Score=84.36 Aligned_cols=104 Identities=16% Similarity=0.070 Sum_probs=74.9
Q ss_pred eeeecccccccCccccccCCCCCCeEEecCCCCCcccC-CCCCCCCCcceEecccccccccccccCcccccccccccccc
Q 036119 639 EISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFP-EEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 639 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 717 (839)
.++.+++... ..|..+..+++|++|++.+++.++.++ ..+..+++|+.|++++|++...-|..|..+++|++|+|++|
T Consensus 12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 3444444433 345566778899999998776565555 45777889999999998655444667888999999999999
Q ss_pred cCCccCCCCCCCCCcceEEecCCCCC
Q 036119 718 PSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 718 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
.+....+......+|+.|+|++|++.
T Consensus 91 ~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCcccChhhhccccccccccCCCccc
Confidence 88643333344567999999999875
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.54 E-value=4e-10 Score=105.18 Aligned_cols=86 Identities=19% Similarity=0.046 Sum_probs=38.8
Q ss_pred cccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcc
Q 036119 654 DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQ 733 (839)
Q Consensus 654 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 733 (839)
.+..+++|++|++++|.+. .++ .+..+++|++|++++|. ++.+|.....+++|+.|++++|.+. .++....+++|+
T Consensus 43 sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~-~l~~~~~l~~L~ 118 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIA-SLSGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECC-CHHHHHHHHHSS
T ss_pred HHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccc-ccccccccccccccccccccccccc-cccccccccccc
Confidence 4444555555555555332 232 23344555555555553 2334433333445555555555443 222223344555
Q ss_pred eEEecCCCCC
Q 036119 734 SLDVHDLKIS 743 (839)
Q Consensus 734 ~L~l~~~~~~ 743 (839)
+|++++|++.
T Consensus 119 ~L~L~~N~i~ 128 (198)
T d1m9la_ 119 VLYMSNNKIT 128 (198)
T ss_dssp EEEESEEECC
T ss_pred ccccccchhc
Confidence 5555555443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.50 E-value=2.5e-09 Score=99.65 Aligned_cols=106 Identities=20% Similarity=0.246 Sum_probs=84.8
Q ss_pred HHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC--
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP-- 365 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp-- 365 (839)
..+..+++|++|+|++|. +..++ .+..+++|++|++++|.+. .+|... ..+++|++|++++| .++ .++
T Consensus 42 ~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-----~~~~~L~~L~l~~N-~i~-~l~~~ 111 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIK-KIENLD-----AVADTLEELWISYN-QIA-SLSGI 111 (198)
T ss_dssp HHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEEEC-SCSSHH-----HHHHHCCEEECSEE-ECC-CHHHH
T ss_pred hHHhcccccceeECcccC-CCCcc-cccCCccccChhhcccccc-cccccc-----cccccccccccccc-ccc-ccccc
Confidence 457789999999999999 88886 5999999999999999984 455322 22678999999996 666 455
Q ss_pred cCCCCccEEeecccC--ccc--ccCCCCCCccEEEeccccce
Q 036119 366 RRLLLLETLDITSCD--QLL--VTIQCLPALSELQIDGCKRV 403 (839)
Q Consensus 366 ~~l~~L~~L~l~~~~--~l~--~~l~~l~~L~~L~l~~~~~~ 403 (839)
..+++|+.|++++|. .++ ..+..+++|+.|++++|+..
T Consensus 112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred cccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 367889999999886 343 46889999999999998754
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.45 E-value=3.3e-08 Score=101.60 Aligned_cols=109 Identities=15% Similarity=0.076 Sum_probs=69.3
Q ss_pred CCcceeeeccccccc----CccccccCCCCCCeEEecCCCCCcc-----cCCCCCCCCCcceEecccccccc----cccc
Q 036119 635 TSLEEISISVLENLK----SLPADLHNLHHLQKIWIFGCPNLES-----FPEEGLPSTKLTELTIYDCENLK----ALPN 701 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~----~lp~ 701 (839)
+.|+.+.+++|.+.. .+...+...+.|++|++++|.+... +...+..+++|+.|++++|.+.. .+..
T Consensus 158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~ 237 (344)
T d2ca6a1 158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237 (344)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence 556666666665432 2223345677888888888865432 23345566788888888886532 2455
Q ss_pred cCcccccccccccccccCCccCCC-------CCCCCCcceEEecCCCCC
Q 036119 702 CMHNLTSLLNLKISECPSVVSFPE-------DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 702 ~l~~l~~L~~L~l~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~ 743 (839)
.+..+++|++|++++|.+...... ....++|++|++++|.+.
T Consensus 238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~ 286 (344)
T d2ca6a1 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 286 (344)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence 667788888888888876432110 023467888999988875
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.9e-07 Score=80.60 Aligned_cols=86 Identities=23% Similarity=0.177 Sum_probs=56.9
Q ss_pred CCCcceeeecccccccCc-cccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccc
Q 036119 634 NTSLEEISISVLENLKSL-PADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNL 712 (839)
Q Consensus 634 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 712 (839)
.++|++|++.+++....+ +..|.++++|+.|++++|.+...-+..+..+++|++|+|++|+ ++.+|.......+|+.|
T Consensus 30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L 108 (156)
T d2ifga3 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQEL 108 (156)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEE
T ss_pred ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC-CcccChhhhcccccccc
Confidence 356666666555433333 3456778888888888886655445566777888888888875 44566555445578888
Q ss_pred ccccccCC
Q 036119 713 KISECPSV 720 (839)
Q Consensus 713 ~l~~~~~~ 720 (839)
+|++|++.
T Consensus 109 ~L~~Np~~ 116 (156)
T d2ifga3 109 VLSGNPLH 116 (156)
T ss_dssp ECCSSCCC
T ss_pred ccCCCccc
Confidence 88888763
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.30 E-value=1.5e-07 Score=96.58 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=57.9
Q ss_pred CCcceeeecccccccC-----ccccccCCCCCCeEEecCCCCCcc----cCCCCCCCCCcceEeccccccccc----ccc
Q 036119 635 TSLEEISISVLENLKS-----LPADLHNLHHLQKIWIFGCPNLES----FPEEGLPSTKLTELTIYDCENLKA----LPN 701 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~----lp~ 701 (839)
++++.|++++|.+... +...+..+++|+.|++++|..... +...+..+++|++|++++|.+... +..
T Consensus 186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~ 265 (344)
T d2ca6a1 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 265 (344)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence 4555555555554321 222345566777777777654321 223344556777777777754322 222
Q ss_pred cCcc--cccccccccccccCCccC----CCC--CCCCCcceEEecCCCCC
Q 036119 702 CMHN--LTSLLNLKISECPSVVSF----PED--GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 702 ~l~~--l~~L~~L~l~~~~~~~~~----~~~--~~~~~L~~L~l~~~~~~ 743 (839)
.+.. .+.|++|++++|.+.... ... ...++|+.|++++|.+.
T Consensus 266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 2222 356777777777653211 100 13567888888888765
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=2.7e-05 Score=68.92 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCCceeEEEeCCCccccccc---ccccCcCcCcEeEecCccccccccC-CCCCCccccCCCccEEeccCc
Q 036119 283 WSVLQMLLNHLPRLRVFSLCGYRNIFNLP---NEIGNLKHLRCLNLSRTKWEEWIPC-GAGQEVDEVFPKLRTLSLDNC 357 (839)
Q Consensus 283 ~~~~~~~~~~l~~L~~L~L~~~~~~~~lp---~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~~~~~~l~~L~~L~L~~~ 357 (839)
...++..+..+++|++|+|++|. +..++ ..+..+++|++|++++|.+.. ++. .... ..+|+.|++++|
T Consensus 54 ~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~-----~~~L~~L~L~~N 125 (162)
T d1koha1 54 AATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIK-----GLKLEELWLDGN 125 (162)
T ss_dssp HHHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHT-----TCCCSSCCCTTS
T ss_pred hhhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCcccc-chhhhhhh-----ccccceeecCCC
Confidence 45566677889999999999999 77764 557789999999999999854 332 1111 456888888886
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=2.7e-05 Score=68.86 Aligned_cols=64 Identities=13% Similarity=-0.050 Sum_probs=32.7
Q ss_pred CCCCCCeEEecCCCCCcc--cCCCCCCCCCcceEecccccccccccc-cCcccccccccccccccCCc
Q 036119 657 NLHHLQKIWIFGCPNLES--FPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 657 ~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 721 (839)
.+++|++|++++|.+... ++..+..+++|+.|++++|.+ ..+++ ......+|+.|++++|++..
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i-~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC-CCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc-ccchhhhhhhccccceeecCCCCcCc
Confidence 466666666666654432 122233456666666666643 22322 11223356666666666543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.77 E-value=0.0016 Score=57.25 Aligned_cols=86 Identities=15% Similarity=-0.021 Sum_probs=39.7
Q ss_pred ccCCCCCCeEEecCCCCCcccC----CCCCCCCCcceEecccccccc----cccccCcccccccccccccccCCccC---
Q 036119 655 LHNLHHLQKIWIFGCPNLESFP----EEGLPSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISECPSVVSF--- 723 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~~--- 723 (839)
+...++|++|++++|....... ..+...++|++|++++|.+.. .+...+...++|++|++++|.....-
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~ 119 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 119 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence 3344555555555554432211 112223456666666664332 12334455566666666655432110
Q ss_pred ----CCC-CCCCCcceEEecCC
Q 036119 724 ----PED-GFPTNLQSLDVHDL 740 (839)
Q Consensus 724 ----~~~-~~~~~L~~L~l~~~ 740 (839)
... ...++|+.|+++.+
T Consensus 120 ~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 120 EMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCccEeeCcCC
Confidence 000 12456677776654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.65 E-value=0.001 Score=58.71 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=56.4
Q ss_pred cccceeEeccCCCchh-----hhhhc-CCCCcceeeeccccccc----CccccccCCCCCCeEEecCCCCCcc----cCC
Q 036119 612 QSLKYLKIEDCSKLES-----LAERL-DNTSLEEISISVLENLK----SLPADLHNLHHLQKIWIFGCPNLES----FPE 677 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~-----~~~~~-~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~ 677 (839)
++|++|+++++..+.. +...+ ..++|++|++++|.+.. .+...+...+.|++|++++|.+... +..
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 4577777776543322 12222 23667777777776543 2222344556777777777755432 122
Q ss_pred CCCCCCCcceEeccccccc-------ccccccCcccccccccccccc
Q 036119 678 EGLPSTKLTELTIYDCENL-------KALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 678 ~~~~~~~L~~L~l~~~~~l-------~~lp~~l~~l~~L~~L~l~~~ 717 (839)
.+...++|++|++++|... ..+...+...++|++|+++.+
T Consensus 95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 3444567777777665321 113334445566666666544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=94.01 E-value=0.006 Score=53.46 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=13.3
Q ss_pred ccccCCCCCCccEEEecccc
Q 036119 382 LLVTIQCLPALSELQIDGCK 401 (839)
Q Consensus 382 l~~~l~~l~~L~~L~l~~~~ 401 (839)
+...+...++|+.|++..+.
T Consensus 124 La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 124 IANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeCcCCC
Confidence 33456667788888876653
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=92.96 E-value=0.013 Score=51.14 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=26.5
Q ss_pred cCCCCCCeEEecCCCCCcc----cCCCCCCCCCcceEecccccccc----cccccCcccccccccccc
Q 036119 656 HNLHHLQKIWIFGCPNLES----FPEEGLPSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~ 715 (839)
...++|++|++++|..... +...+...++++.+++++|.... .+...+...++|+.++|.
T Consensus 43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~ 110 (166)
T d1io0a_ 43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID 110 (166)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeec
Confidence 3445555555555543221 11112223455555555554321 223344555556554443
|