Citrus Sinensis ID: 036127

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC
Secondary Structure (PSIPRED)
cccccEEEcccccccccccHHHHHccccccEEEccccEEEEcccccccccccccEEEccccccEEEcccccccccccccccccccccEEcccHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccHHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccccccccHHHHHcHHHccEccc
Coil and Loop (DISEMBL)
mssisdirltnnrlsgelpknigsyLPYLKALfldknmfhgkipsalSKCKQLQQLNLQFNnlsgaipkeignlTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNslsgslpsridlslptvevldc
Flexible Loop (DISEMBL)
mssisdirltnnrlsgelpknIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLsgslpsridlslptvevldc
Low Complexity Region (SEG)
MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKqlqqlnlqfnnlSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC
Disordered region (IsUnstruct)
*****************LPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG******************
Disordered Region (DISOPRED)
MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC
Disordered Region (DISEMBL)
MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC
Disordered Region (DISPRO)
*SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.883	0.113	0.420	3e-22
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.883	0.113	0.420	4e-22
Q9SYQ8	980	Receptor protein kinase C	no	no	0.877	0.138	0.416	9e-22
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.845	0.114	0.401	1e-21
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.916	0.113	0.433	3e-21
Q9LHP4	1141	Receptor-like protein kin	no	no	0.877	0.119	0.416	5e-21
C0LGV1	1135	LRR receptor-like serine/	no	no	0.909	0.124	0.437	1e-20
C0LGN2	1020	Probable leucine-rich rep	no	no	0.890	0.135	0.407	4e-20
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.883	0.114	0.398	7e-20
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.890	0.125	0.412	9e-20

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 1/138 (0%)

Query: 7   IRLTNNRLSGELPKNI-GSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG 65
           + +++N L+G +P  I    +  LK L+L  N+F G IP +LS C QL  L+L FN L+G
Sbjct: 406 LDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTG 465

Query: 66  AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
           +IP  +G+L+ LK + L  N+L GEIP E+  L  LE+L+L  N L G  PA++ N + L
Sbjct: 466 SIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKL 525

Query: 126 KVLMLINNSLSGSLPSRI 143
             + L NN LSG +P+ +
Sbjct: 526 NWISLSNNQLSGEIPASL 543

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.
Solanum lycopersicum (taxid: 4081)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 1/138 (0%)

Query: 7   IRLTNNRLSGELPKNI-GSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG 65
           + +++N L+G +P  I    +  LK L+L  N+F G IP +LS C QL  L+L FN L+G
Sbjct: 406 LDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTG 465

Query: 66  AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
           +IP  +G+L+ LK + L  N+L GEIP E+  L  LE+L+L  N L G  PA++ N + L
Sbjct: 466 SIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKL 525

Query: 126 KVLMLINNSLSGSLPSRI 143
             + L NN LSG +P+ +
Sbjct: 526 NWISLSNNQLSGEIPASL 543

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 1/137 (0%)

Query: 4   ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNL 63
           +  I L+NN  SGE+P  IG++ P L+ LFLD+N F G IP  + + K L ++N   NN+
Sbjct: 458 LDQIYLSNNWFSGEIPPAIGNF-PNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNI 516

Query: 64  SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS 123
           +G IP  I   + L  + L  N+++GEIP  I N+ NL  L +  N L G  P  I NM+
Sbjct: 517 TGGIPDSISRCSTLISVDLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMT 576

Query: 124 TLKVLMLINNSLSGSLP 140
           +L  L L  N LSG +P
Sbjct: 577 SLTTLDLSFNDLSGRVP 593

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 78/132 (59%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
            ++NR SG +P ++      L+ L L  N+  G+IP A+S+C +L+ ++L  N L+G IP
Sbjct: 357 FSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIP 416

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
            EIGNL  L+     YN + GEIP EI  L NL+DL+L  N L G  P   FN S ++ +
Sbjct: 417 PEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWV 476

Query: 129 MLINNSLSGSLP 140
              +N L+G +P
Sbjct: 477 SFTSNRLTGEVP 488

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 82/143 (57%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           MS + D+ L NN LSG LPK+I S    L+ L L      G+IP  LSKC+ L+QL+L  
Sbjct: 310 MSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSN 369

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N+L+G+IP+ +  L  L  +YL  N L G +   I+NL NL+ LVL  N L G  P  I 
Sbjct: 370 NSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEIS 429

Query: 121 NMSTLKVLMLINNSLSGSLPSRI 143
            +  L+VL L  N  SG +P  I
Sbjct: 430 ALRKLEVLFLYENRFSGEIPQEI 452

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 1/137 (0%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA 66
           I L+ N LSG +P +IG  L +L+   +  N F G IP+ +S C  L QL L  N +SG 
Sbjct: 327 IDLSLNLLSGSIPSSIG-RLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGL 385

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
           IP E+G LT L   +   N+L G IP  +A+  +L+ L L  N L G  P+ +F +  L 
Sbjct: 386 IPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLT 445

Query: 127 VLMLINNSLSGSLPSRI 143
            L+LI+NSLSG +P  I
Sbjct: 446 KLLLISNSLSGFIPQEI 462

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 84/144 (58%), Gaps = 3/144 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           M S++ I L+ N  SG +PK+ G+ L  L+ L L  N   G IPS LS C +L Q  +  
Sbjct: 322 MKSLNAIDLSMNYFSGTIPKSFGN-LSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDA 380

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEY-NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
           N +SG IP EIG L  L  I+L + NKL G IP E+A   NL+ L L  N L G  PA +
Sbjct: 381 NQISGLIPPEIGLLKELN-IFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGL 439

Query: 120 FNMSTLKVLMLINNSLSGSLPSRI 143
           F +  L  L+LI+N++SG +P  I
Sbjct: 440 FQLRNLTKLLLISNAISGVIPLEI 463

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 2/140 (1%)

Query: 4   ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNL 63
           +++I L    L G LP ++ S LP+L+ L L +N  +G IP        L  ++L  N +
Sbjct: 89  VTNIVLKAQDLQGSLPTDL-SGLPFLQELDLTRNYLNGSIPPEWG-ASSLLNISLLGNRI 146

Query: 64  SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS 123
           SG+IPKE+GNLT L G+ LEYN+L G+IP E+ NL NL+ L+L  N L G  P+    ++
Sbjct: 147 SGSIPKELGNLTTLSGLVLEYNQLSGKIPPELGNLPNLKRLLLSSNNLSGEIPSTFAKLT 206

Query: 124 TLKVLMLINNSLSGSLPSRI 143
           TL  L + +N  +G++P  I
Sbjct: 207 TLTDLRISDNQFTGAIPDFI 226

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 1/138 (0%)

Query: 4   ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNL 63
           +  + L NN+L+G +P++ G  L  L  L L KN   G +P++L   K+L  ++L FNNL
Sbjct: 654 LQGLNLANNQLNGHIPESFG-LLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNL 712

Query: 64  SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS 123
           SG +  E+  +  L G+Y+E NK  GEIP E+ NL  LE L +  N+L G  P  I  + 
Sbjct: 713 SGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLP 772

Query: 124 TLKVLMLINNSLSGSLPS 141
            L+ L L  N+L G +PS
Sbjct: 773 NLEFLNLAKNNLRGEVPS 790

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 10/148 (6%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
           L  N+LSGELPK IG  L  L  + L +N F G IP  +S C  L+ L L  N L G IP
Sbjct: 224 LAQNQLSGELPKEIG-MLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIP 282

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
           KE+G+L  L+ +YL  N L+G IP EI NL    ++    N L G  P  + N+  L++L
Sbjct: 283 KELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELL 342

Query: 129 MLINNSLSGSLP---------SRIDLSL 147
            L  N L+G++P         S++DLS+
Sbjct: 343 YLFENQLTGTIPVELSTLKNLSKLDLSI 370

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
359485453	1202	PREDICTED: probable LRR receptor-like se	0.980	0.126	0.483	3e-30
359497186	1140	PREDICTED: LRR receptor-like serine/thre	0.980	0.133	0.496	3e-29
296085726	932	unnamed protein product [Vitis vinifera]	0.922	0.153	0.496	3e-29
147769371	1241	hypothetical protein VITISV_010511 [Viti	0.980	0.122	0.477	8e-29
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.980	0.126	0.490	1e-28
359483677	1229	PREDICTED: LRR receptor-like serine/thre	0.941	0.118	0.490	3e-28
359485451	1454	PREDICTED: LRR receptor-like serine/thre	0.967	0.103	0.464	4e-27
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.980	0.107	0.457	5e-27
147852480	1229	hypothetical protein VITISV_039533 [Viti	0.941	0.118	0.477	7e-27
255578886	1043	serine-threonine protein kinase, plant-t	0.974	0.144	0.444	3e-26

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 99/153 (64%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+ +I   NN LSG LP +I  +LP L+ L L  N   G++P+ LS C +L  L L +
Sbjct: 333 ISSLQEIGFANNSLSGSLPMDICKHLPNLQWLLLSLNQLSGQLPTTLSLCGELLTLTLAY 392

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           NN +G+IP+EIGNL+ L+ IY   +   G IP E+ NL+NL+ L L +N L G+ P AIF
Sbjct: 393 NNFTGSIPREIGNLSKLEQIYFRRSSFTGNIPKELGNLVNLQFLSLNVNNLTGIVPEAIF 452

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L+VL L  N LSGSLPS I   LP +E L
Sbjct: 453 NISKLQVLSLAGNHLSGSLPSSIGSWLPNLEQL 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 98/153 (64%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  I  T+N LSG LPK+I  +LP L+ L L +N   G++P+ LS C +L  L+L F
Sbjct: 274 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 333

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N   G+IPKEIGNL+ L+ IYL  N L G IP    NL  L+ L LG+N L G  P AIF
Sbjct: 334 NKFRGSIPKEIGNLSKLEEIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 393

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L+ L ++ N LSGSLPS I   LP +E L
Sbjct: 394 NISKLQSLAMVKNHLSGSLPSSIGTWLPDLEGL 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085726|emb|CBI29526.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 98/153 (64%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  I  T+N LSG LPK+I  +LP L+ L L +N   G++P+ LS C +L  L+L F
Sbjct: 134 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 193

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N   G+IPKEIGNL+ L+ IYL  N L G IP    NL  L+ L LG+N L G  P AIF
Sbjct: 194 NKFRGSIPKEIGNLSKLEEIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 253

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L+ L ++ N LSGSLPS I   LP +E L
Sbjct: 254 NISKLQSLAMVKNHLSGSLPSSIGTWLPDLEGL 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 98/153 (64%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  I  +NN LSG LP +I  +LP L+ L+L +N   G++P+ LS C +L  L+L  
Sbjct: 375 ISSLQIIDFSNNSLSGSLPMDICKHLPNLQGLYLLQNHLSGQLPTTLSLCGELLYLSLAV 434

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N   G+IP+EIGNL+ L+ I L  N L G IP    NL+ L+ L LGMN L G  P AIF
Sbjct: 435 NKFRGSIPREIGNLSKLEDISLRSNSLVGSIPTSFGNLMALKYLDLGMNFLTGTVPEAIF 494

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L++L+L+ N LSGSLP  I   LP +E L
Sbjct: 495 NISELQILVLVQNHLSGSLPPSIGTWLPDLEGL 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 96/153 (62%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  I  TNN LSG LP  I  +LP L+ L+L +N   G++P+ LS C +L  L+L F
Sbjct: 339 ISSLQVIDFTNNSLSGSLPMGICKHLPNLQGLYLAQNHLSGQLPTTLSLCGELLFLSLSF 398

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N   G+IP+EIGNL+ L+ I L  N L G IP    NL  L+ L LG+N L G  P AIF
Sbjct: 399 NKFRGSIPREIGNLSKLEHIDLRSNSLVGSIPTSFGNLKALKFLNLGINFLTGTVPEAIF 458

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L+ L L+ N LSGSLPS I   LP +E L
Sbjct: 459 NISELQNLALVQNHLSGSLPSSIGTWLPDLEGL 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 97/153 (63%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  I  T+N LSG LPK+I  +LP L+ L L +N   G++P+ LS C +L  L+L F
Sbjct: 363 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 422

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N   G+IPKEIGNL+ L+ IYL  N L G IP    NL  L+ L LG+N L G  P AIF
Sbjct: 423 NKFRGSIPKEIGNLSKLEKIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 482

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L+ L ++ N LSGSLPS I   L  +E L
Sbjct: 483 NISKLQSLAMVKNHLSGSLPSSIGTWLSDLEGL 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 95/153 (62%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+    LT+N L G LP +I  +LP L+ L+L  N   G++PS LS C QLQ L+L  
Sbjct: 588 ISSLQIFDLTDNSLLGSLPMDIYKHLPNLQELYLSWNKLSGQLPSTLSLCGQLQSLSLWG 647

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N  +G IP   GNLT L+ + L  N + G IP+E+ NL+NL++L L  N L G+ P AIF
Sbjct: 648 NRFTGNIPPSFGNLTALQDLELGDNNIQGNIPNELGNLINLQNLKLSENNLTGIIPEAIF 707

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L+ L L  N  SGSLPS +   LP +E L
Sbjct: 708 NISKLQSLSLAQNHFSGSLPSSLGTQLPDLEGL 740

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 96/153 (62%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  I LT+N L G LP +I  +L  L+ L+L  N   G++P+ LS C QL  L+L  
Sbjct: 334 ISSLQMIDLTDNSLHGSLPMDICKHLHNLQGLYLSFNQLSGQLPTTLSLCGQLLSLSLWG 393

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N  +G IP   GNLT+L+ + L  N + G IP+E+ NL+NL++L L +N L G+ P AIF
Sbjct: 394 NRFTGNIPPSFGNLTVLQDLELXENNIQGNIPNELGNLINLQNLKLSVNNLTGIIPEAIF 453

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L+ L L  N  SGSLPS I   LP +E L
Sbjct: 454 NISKLQTLXLAQNHFSGSLPSSIGTQLPDLEGL 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 96/153 (62%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  I  +NN LSG LP +I  +LP L+ L L  N   G++P+ LS C++L  L+L F
Sbjct: 363 ISSLQGIGFSNNSLSGSLPMDICKHLPNLQWLDLALNHLSGQLPTTLSLCRELLVLSLSF 422

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N   G+IP+EIGNL+ L+ I L  N L G IP    NL+ L+ L LG+N L G  P AIF
Sbjct: 423 NKFRGSIPREIGNLSKLEWIDLSSNSLVGSIPTSFGNLMALKFLNLGINNLTGTVPEAIF 482

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N+S L+ L +  N LSGSLPS I   LP +E L
Sbjct: 483 NISKLQSLAMAINHLSGSLPSSIGTWLPDLEGL 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 99/153 (64%), Gaps = 2/153 (1%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  +    N L+G LP NI ++L  L+AL+L+ N+F+G IPS L  C+QL+ L L F
Sbjct: 173 ISSLWLLDFGTNNLTGRLPPNIFTHLANLRALYLNSNLFNGPIPSTLMACQQLKLLALSF 232

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N+  G+I K+IGNLTML+ +YL  N   G IP EI +L +LE+++L +N L G+ P+ I+
Sbjct: 233 NHFEGSIHKDIGNLTMLQELYLGGNNFSGTIPDEIGDLAHLEEIILNVNGLSGLVPSGIY 292

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           N S +  + L  N LSG LPS  +  LP +E  
Sbjct: 293 NASKMTAIGLALNQLSGYLPSSSN--LPNLEFF 323

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.980	0.154	0.389	9.6e-20
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.909	0.137	0.384	1.7e-19
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.909	0.124	0.416	5.2e-19
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.929	0.152	0.351	8.3e-19
TAIR|locus:2204350	980	CLV1 "AT1G75820" [Arabidopsis	0.877	0.138	0.386	1.9e-18
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.980	0.179	0.389	2.4e-18
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.909	0.123	0.373	2.9e-18
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.929	0.128	0.383	4.7e-18
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.967	0.184	0.357	4.7e-18
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.903	0.117	0.380	1.1e-17

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 9.6e-20, P = 9.6e-20
 Identities = 60/154 (38%), Positives = 82/154 (53%)

Query:     1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
             +S ++ +RL+ N   GELP ++GS L +L  L LD N F GKIPS+L             
Sbjct:   207 LSYLTTLRLSRNSFFGELPSSLGS-LFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHK 265

Query:    61 XXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
                 G IP  +GNL+ L    L  N + GEIP    NL  L+ L +  N L G FP A+ 
Sbjct:   266 NNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALL 325

Query:   121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             N+  L  L L NN L+G+LPS +  SL  +++ D
Sbjct:   326 NLRKLSTLSLFNNRLTGTLPSNMS-SLSNLKLFD 358

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 245 (91.3 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 55/143 (38%), Positives = 85/143 (59%)

Query:     2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXX 61
             +S+S + L  N+++G +PK+IG+ +  L+ L+L  N F G +PS+L + K          
Sbjct:   376 TSLSFLALELNKITGSIPKDIGNLIG-LQHLYLCNNNFRGSLPSSLGRLKNLGILLAYEN 434

Query:    62 XXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
               SG+IP  IGNLT L  + L  NK  G IP+ ++NL NL  L L  N L G  P+ +FN
Sbjct:   435 NLSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFN 494

Query:   122 MSTLKVLMLIN-NSLSGSLPSRI 143
             + TL +++ ++ N+L GS+P  I
Sbjct:   495 IQTLSIMINVSKNNLEGSIPQEI 517

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 5.2e-19, P = 5.2e-19
 Identities = 60/144 (41%), Positives = 78/144 (54%)

Query:     1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
             M S++ I L+ N  SG +PK+ G+ L  L+ L L  N   G IPS LS C          
Sbjct:   322 MKSLNAIDLSMNYFSGTIPKSFGN-LSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDA 380

Query:    61 XXXSGAIPKEIGNLTMLKGIYLEY-NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
                SG IP EIG L  L  I+L + NKL G IP E+A   NL+ L L  N L G  PA +
Sbjct:   381 NQISGLIPPEIGLLKELN-IFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGL 439

Query:   120 FNMSTLKVLMLINNSLSGSLPSRI 143
             F +  L  L+LI+N++SG +P  I
Sbjct:   440 FQLRNLTKLLLISNAISGVIPLEI 463

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 51/145 (35%), Positives = 79/145 (54%)

Query:     1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
             +S ++ + L++N+ SG++P +IG+ L +L +L L  N F G+IPS++             
Sbjct:   172 LSRLTSLHLSSNQFSGQIPSSIGN-LSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPS 230

Query:    61 XXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
                 G IP  IGNL  L  +YL YN   GEIP    NL  L  L +  N L G  P ++ 
Sbjct:   231 NDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLL 290

Query:   121 NMSTLKVLMLINNSLSGSLPSRIDL 145
             N++ L  L+L +N  +G++P+ I L
Sbjct:   291 NLTRLSALLLSHNQFTGTIPNNISL 315

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2204350 CLV1 "AT1G75820" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
 Identities = 53/137 (38%), Positives = 73/137 (53%)

Query:     4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXX 63
             +  I L+NN  SGE+P  IG++ P L+ LFLD+N F G IP  + + K            
Sbjct:   458 LDQIYLSNNWFSGEIPPAIGNF-PNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNI 516

Query:    64 SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS 123
             +G IP  I   + L  + L  N+++GEIP  I N+ NL  L +  N L G  P  I NM+
Sbjct:   517 TGGIPDSISRCSTLISVDLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMT 576

Query:   124 TLKVLMLINNSLSGSLP 140
             +L  L L  N LSG +P
Sbjct:   577 SLTTLDLSFNDLSGRVP 593

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007172 "signal complex assembly" evidence=IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0030154 "cell differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 60/154 (38%), Positives = 86/154 (55%)

Query:     1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
             +S ++ + L  N+  GE+P +IG+ L  L+ L L  N+  G+IPS+L             
Sbjct:   133 LSHLTLVNLYFNKFVGEIPASIGN-LNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFS 191

Query:    61 XXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
                 G IP  IG+L  L+ + L  N L GEIP  + NL NL  LVL  N LVG  PA+I 
Sbjct:   192 NRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIG 251

Query:   121 NMSTLKVLMLINNSLSGSLP-SRIDLSLPTVEVL 153
             N+  L+V+   NNSLSG++P S  +L+  ++ VL
Sbjct:   252 NLIELRVMSFENNSLSGNIPISFANLTKLSIFVL 285

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 53/142 (37%), Positives = 76/142 (53%)

Query:     2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXX 61
             S++  I L+ N LSG +P +IG  L +L+   +  N F G IP+ +S C           
Sbjct:   322 SNLKMIDLSLNLLSGSIPSSIGR-LSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKN 380

Query:    62 XXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
               SG IP E+G LT L   +   N+L G IP  +A+  +L+ L L  N L G  P+ +F 
Sbjct:   381 QISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFM 440

Query:   122 MSTLKVLMLINNSLSGSLPSRI 143
             +  L  L+LI+NSLSG +P  I
Sbjct:   441 LRNLTKLLLISNSLSGFIPQEI 462

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 56/146 (38%), Positives = 78/146 (53%)

Query:     7 IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
             +  TNN L+G LP+++G+ L  L      +N F G IP+ + KC             SG 
Sbjct:   187 VAYTNN-LTGPLPRSLGN-LNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGE 244

Query:    67 IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
             +PKEIG L  L+ + L  NK  G IP +I NL +LE L L  N LVG  P+ I NM +LK
Sbjct:   245 LPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLK 304

Query:   127 VLMLINNSLSGSLPSRIDLSLPTVEV 152
              L L  N L+G++P  +      +E+
Sbjct:   305 KLYLYQNQLNGTIPKELGKLSKVMEI 330

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 230 (86.0 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 54/151 (35%), Positives = 82/151 (54%)

Query:     1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
             +S +  ++L++N LSG++P+ + S L  L+ L L+ N   G+IP+AL             
Sbjct:   101 LSFLRTLQLSDNHLSGKIPQEL-SRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTN 159

Query:    61 XXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
                SGAIP  +G LT L  + L  N L G IP     L  L  L L  N L G  P  I+
Sbjct:   160 NTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIW 219

Query:   121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVE 151
             N+S+L +  +I+N LSG+LP+    +LP+++
Sbjct:   220 NISSLTIFEVISNKLSGTLPTNAFSNLPSLQ 250

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 54/142 (38%), Positives = 79/142 (55%)

Query:     2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXX 61
             SS+ ++ LTNN+++G +P+++   LP L AL LD N F G+IP +L K            
Sbjct:   401 SSLGELLLTNNQINGSIPEDLWK-LP-LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYN 458

Query:    62 XXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
                G +P EIGN   LK + L  N+L GEIP EI  L +L  L L  N+  G  P  + +
Sbjct:   459 RLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGD 518

Query:   122 MSTLKVLMLINNSLSGSLPSRI 143
              ++L  L L +N+L G +P +I
Sbjct:   519 CTSLTTLDLGSNNLQGQIPDKI 540

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (252), Expect = 2e-25
 Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 24/168 (14%)

Query: 9   LTNNRLSGELPKNIGSY-----------------------LPYLKALFLDKNMFHGKIPS 45
           L+NN LSGE+P +IGS+                       L  L+ L L  N   G+IP 
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Query: 46  ALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLV 105
            L + K L+ + L +NNLSG IP EIG LT L  + L YN L G IP  + NL NL+ L 
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Query: 106 LGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
           L  N L G  P +IF++  L  L L +NSLSG +P  + + L  +E+L
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEIL 313

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 2e-22
 Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 2/153 (1%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++S+  + L +N+L G++P+ +G  +  LK ++L  N   G+IP  +     L  L+L +
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           NNL+G IP  +GNL  L+ ++L  NKL G IP  I +L  L  L L  N L G  P  + 
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153
            +  L++L L +N+ +G +P  +  SLP ++VL
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALT-SLPRLQVL 337

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.9 bits (223), Expect = 1e-21
 Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 3/140 (2%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           SS+  + L+NN  +G +P      +P L+ L L  NM  G+IP+ +     L+ L+L  N
Sbjct: 118 SSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
            L G IP  + NLT L+ + L  N+L G+IP E+  + +L+ + LG N L G  P  I  
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 122 MSTLKVLMLINNSLSGSLPS 141
           +++L  L L+ N+L+G +PS
Sbjct: 235 LTSLNHLDLVYNNLTGPIPS 254

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.4 bits (219), Expect = 4e-21
 Identities = 61/140 (43%), Positives = 73/140 (52%), Gaps = 1/140 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           M S+  I L  N LSGE+P  IG  L  L  L L  N   G IPS+L   K LQ L L  
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N LSG IP  I +L  L  + L  N L GEIP  +  L NLE L L  N   G  P A+ 
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 121 NMSTLKVLMLINNSLSGSLP 140
           ++  L+VL L +N  SG +P
Sbjct: 330 SLPRLQVLQLWSNKFSGEIP 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.8 bits (215), Expect = 1e-20
 Identities = 58/140 (41%), Positives = 79/140 (56%), Gaps = 2/140 (1%)

Query: 4   ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNL 63
           I  I L+NN+LSG +P +I +    L+ L L  N F G IP        L+ L+L  N L
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNML 152

Query: 64  SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS 123
           SG IP +IG+ + LK + L  N L G+IP+ + NL +LE L L  N LVG  P  +  M 
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 124 TLKVLMLINNSLSGSLPSRI 143
           +LK + L  N+LSG +P  I
Sbjct: 213 SLKWIYLGYNNLSGEIPYEI 232

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.7 bits (212), Expect = 3e-20
 Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 4/143 (2%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSK-CKQLQQLNLQF 60
           S +  I L+   +SG++   I   LPY++ + L  N   G IP  +      L+ LNL  
Sbjct: 69  SRVVSIDLSGKNISGKISSAI-FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           NN +G+IP+  G++  L+ + L  N L GEIP++I +  +L+ L LG N+LVG  P ++ 
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 121 NMSTLKVLMLINNSLSGSLPSRI 143
           N+++L+ L L +N L G +P  +
Sbjct: 186 NLTSLEFLTLASNQLVGQIPREL 208

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 6e-19
 Identities = 63/149 (42%), Positives = 82/149 (55%), Gaps = 8/149 (5%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
           L++N LSGE+P+ +   L  L+ L L  N F GKIP AL+   +LQ L L  N  SG IP
Sbjct: 291 LSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 69  KEIG---NLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
           K +G   NLT+L    L  N L GEIP  + +  NL  L+L  N L G  P ++    +L
Sbjct: 350 KNLGKHNNLTVLD---LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406

Query: 126 KVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           + + L +NS SG LPS     LP V  LD
Sbjct: 407 RRVRLQDNSFSGELPSEF-TKLPLVYFLD 434

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.8 bits (202), Expect = 7e-19
 Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           M S+  + L  N+  G LP + GS    L+ L L +N F G +P  L    +L QL L  
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N LSG IP E+ +   L  + L +N+L G+IP   + +  L  L L  N L G  P  + 
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 121 NMSTLKVLMLINNSLSGSLPS 141
           N+ +L  + + +N L GSLPS
Sbjct: 569 NVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.6 bits (191), Expect = 2e-17
 Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 24/165 (14%)

Query: 2   SSISDIRLTNNRLSGELPK--------------------NIGSY---LPYLKALFLDKNM 38
            S+  +RL +N  SGELP                      I S    +P L+ L L +N 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 39  FHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANL 98
           F G +P      K+L+ L+L  N  SGA+P+++G+L+ L  + L  NKL GEIP E+++ 
Sbjct: 464 FFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 99  LNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
             L  L L  N L G  PA+   M  L  L L  N LSG +P  +
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 4e-15
 Identities = 35/92 (38%), Positives = 52/92 (56%)

Query: 28  YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKL 87
           ++  L LD     G IP+ +SK + LQ +NL  N++ G IP  +G++T L+ + L YN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 88  HGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
           +G IP  +  L +L  L L  N L G  PAA+
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 5e-15
 Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 1/132 (0%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
           L  N+LSG +P +I S L  L +L L  N   G+IP  + + + L+ L+L  NN +G IP
Sbjct: 267 LYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
             + +L  L+ + L  NK  GEIP  +    NL  L L  N L G  P  + +   L  L
Sbjct: 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Query: 129 MLINNSLSGSLP 140
           +L +NSL G +P
Sbjct: 386 ILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA 66
           ++L +N+ SGE+PKN+G +   L  L L  N   G+IP  L     L +L L  N+L G 
Sbjct: 337 LQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
           IPK +G    L+ + L+ N   GE+P E   L  +  L +  N L G   +  ++M +L+
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 127 VLMLINNSLSGSLP 140
           +L L  N   G LP
Sbjct: 456 MLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           + ++  + L +N  +G++P  + S LP L+ L L  N F G+IP  L K   L  L+L  
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           NNL+G IP+ + +   L  + L  N L GEIP  +    +L  + L  N   G  P+   
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            +  +  L + NN+L G + SR    +P++++L 
Sbjct: 426 KLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLS 458

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 4   ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNL 63
           I  + L N  L G +P +I S L +L+++ L  N   G IP +L     L+ L+L +N+ 
Sbjct: 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 64  SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLL 99
           +G+IP+ +G LT L+ + L  N L G +P  +   L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 22/65 (33%), Positives = 41/65 (63%)

Query: 79  GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGS 138
           G+ L+   L G IP++I+ L +L+ + L  N + G  P ++ ++++L+VL L  NS +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 139 LPSRI 143
           +P  +
Sbjct: 482 IPESL 486

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 24/121 (19%)

Query: 56  LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-------------------- 95
           ++L   N+SG I   I  L  ++ I L  N+L G IP +I                    
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 96  ---ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEV 152
               ++ NLE L L  N+L G  P  I + S+LKVL L  N L G +P+ +  +L ++E 
Sbjct: 134 IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEF 192

Query: 153 L 153
           L
Sbjct: 193 L 193

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.001
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 3  SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62
          ++  + L+NNRL+  +P      LP LK L L  N      P A S    L+ L+L  NN
Sbjct: 1  NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 63 L 63
          L
Sbjct: 60 L 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 73  NLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS-TLKVLMLI 131
           N + +  I L    + G+I   I  L  ++ + L  N L G  P  IF  S +L+ L L 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 132 NNSLSGSLPSRIDLSLPTVEVLD 154
           NN+ +GS+P     S+P +E LD
Sbjct: 127 NNNFTGSIPRG---SIPNLETLD 146

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 18/59 (30%), Positives = 25/59 (42%)

Query: 29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKL 87
          LK+L L  N        A      L+ L+L  NNL+   P+    L  L+ + L  N L
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.54
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.52
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.51
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.47
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.47
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
PLN03150	623	hypothetical protein; Provisional	99.38
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.38
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.37
PLN03150	623	hypothetical protein; Provisional	99.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.33
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.33
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.32
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.17
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.76
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.62
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.44
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.41
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.55
PRK15386	426	type III secretion protein GogB; Provisional	97.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.47
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.06
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.99
smart00370	26	LRR Leucine-rich repeats, outliers.	95.99
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.87
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.11
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.5
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.27
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.04
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.09
KOG4341	483	consensus F-box protein containing LRR [General fu	88.92
KOG4341	483	consensus F-box protein containing LRR [General fu	87.47
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.32
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	85.38
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.89

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=8.4e-21  Score=146.87  Aligned_cols=148  Identities=44%  Similarity=0.689  Sum_probs=66.7

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      |+.|++++|.+++.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+....|..++.+++|+.|+++
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCEEECcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            34444444444433343333 34445555555444444444444444444444444444443344444444444444444


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL  153 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l  153 (155)
                      +|.+.+..|..+..+++|+++++.+|.+++..|..+..+++|+.+++++|.+.+.+|..+ ..+++|++|
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L  289 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISL  289 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEE
Confidence            444444444444444444444444444444444444444444444444444443444333 334444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=1.9e-20  Score=144.96  Aligned_cols=151  Identities=42%  Similarity=0.636  Sum_probs=94.7

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+....|..++.+++|+.|+
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            5677777777777656666555 667777777777776666666666666677777766666655666666666666666


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      +++|.+.+..|..+..+++|+.+++.+|.+.+..|..+..+++|+.+++++|.+.+.+|..+ ..+++|++|+
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~  314 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILH  314 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEE
Confidence            66666665566666666666666666666655555555555555555555555554555444 4455555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.77  E-value=6.5e-20  Score=130.55  Aligned_cols=153  Identities=24%  Similarity=0.248  Sum_probs=122.5

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      |.++++|+++.|+++ .+..++.-+++.|+.|+++.|.|....+++...+++|++|+++.|.++...+..|..+..|+.|
T Consensus       268 l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             ecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            356778888888888 6666655478888888888888877667777778888888888888886667778888888888


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCC---ccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP---AAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++.|.++......+..+++|+.|++++|.++..+.   .+|.++++|+.|++.+|.++ .+|...|.+++.|++|||
T Consensus       347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDL  423 (873)
T ss_pred             cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecC
Confidence            888888875555667778888889998888765443   45778999999999999998 999888899999999986

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.76  E-value=6.4e-21  Score=117.15  Aligned_cols=142  Identities=30%  Similarity=0.511  Sum_probs=84.9

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +++.|.++.|.++ .+|+.+. .+.+++.|++.+|+++ ..|..++.++.|+.+.+..|++. ..|..|+.++.|+.||+
T Consensus        34 ~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            4556666777777 6777766 5677777777777776 66666777777777777766665 56666777777777777


Q ss_pred             ecccccc-cCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127           83 EYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE  151 (155)
Q Consensus        83 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~  151 (155)
                      ++|++.. .+|..+..+..|+.+.+++|.+.- +|..++.+++|+.+.+.+|.+- .+|.++ +.++.|+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lr  176 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLR  176 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHH
Confidence            7666542 334444444455555555554433 3444455555555555555544 455544 4444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=2.9e-20  Score=114.29  Aligned_cols=137  Identities=30%  Similarity=0.534  Sum_probs=126.1

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKG   79 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~   79 (155)
                      +.+|+.|++.+|+++ ++|..+. .++++++|++..|.+. ..|.+|+.++.|+.+|+..|.+.. ..|+.|..+..|+.
T Consensus        55 l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             hhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence            367899999999999 9999998 8999999999999998 889999999999999999988763 56888889999999


Q ss_pred             EEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCccc
Q 036127           80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI  143 (155)
Q Consensus        80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  143 (155)
                      |.+++|.+. .+|..++.+.+|+.+.+.+|.+.. .|..++.+.+|+.+.+++|+++ .+|.++
T Consensus       132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             HHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceee-ecChhh
Confidence            999999998 899999999999999999999888 6888999999999999999999 888776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.72  E-value=8.8e-18  Score=119.88  Aligned_cols=149  Identities=26%  Similarity=0.359  Sum_probs=126.1

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      .+.|++++|.+. .+....+..+++|+.+.+..|.++ .+|.......+++.|++..|.+...-...+..++.|+.+|++
T Consensus        80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            456899999998 777776678999999999999998 777766666779999999999986667778889999999999


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      .|.++..--..+..-.++++|++.+|+|+......|..+.+|..+.+++|+++ .+|...|.++++|+.|||
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhc
Confidence            99988443344555578999999999999987788999999999999999999 888888788999998885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.54  E-value=2.1e-16  Score=114.32  Aligned_cols=147  Identities=31%  Similarity=0.445  Sum_probs=86.6

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+|+.++++.|.+. .+|..+. .+++|+.|++++|.|+ .+.-....+.++++|.++.|+++ ..|+.+..++.|+.|.
T Consensus       222 ~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             hhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence            34555666666666 6666665 5666666666666665 44444445555666666666655 5555555555666555


Q ss_pred             eecccccc-cCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ..+|+++. -+|+.++.+.+|+.+...+|.+. .+|..++.|..|+.|.++.|++. .+|..| --++-|.+||+
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI-HlL~~l~vLDl  369 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI-HLLPDLKVLDL  369 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh-hhcCCcceeec
Confidence            55555542 23555555555555555555442 25666677777777777777776 667666 44666666664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.52  E-value=1.3e-15  Score=110.32  Aligned_cols=148  Identities=27%  Similarity=0.352  Sum_probs=76.3

Q ss_pred             CccEEEccCCcccc-cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            3 SISDIRLTNNRLSG-ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         3 ~l~~l~l~~~~~~~-~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .|+.++++.|++.. .+|++++ .+.-|++|++++|+++ .+|..+..-+++-.|.++.|.+....-+.|-+++-|-+|+
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            34445555554432 3555555 4555555555555555 4555555555555555555555433223344444444555


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCcccc-------------------------ccCCccccCCCCCcEEEccCCccc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILV-------------------------GVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------------------------~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      ++.|.+. .+|+.+.++..|++|.+++|++.                         .-+|..+..+.+|..++++.|.+.
T Consensus       157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence            5555544 44555544444555544444321                         114445555556666666666666


Q ss_pred             CCCCcccccCCCccceecC
Q 036127          137 GSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       137 ~~~~~~~~~~~~~L~~l~l  155 (155)
                       .+|.++ -++++|+.|+|
T Consensus       236 -~vPecl-y~l~~LrrLNL  252 (1255)
T KOG0444|consen  236 -IVPECL-YKLRNLRRLNL  252 (1255)
T ss_pred             -cchHHH-hhhhhhheecc
Confidence             666666 55666665553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.51  E-value=7.6e-16  Score=105.85  Aligned_cols=108  Identities=31%  Similarity=0.494  Sum_probs=54.9

Q ss_pred             CCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCC
Q 036127           43 IPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNM  122 (155)
Q Consensus        43 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  122 (155)
                      +|..+..+++|..|++++|.+. ..|..++.+..|+.++++.|.+. ..|..+..+..++++-.++|++..+.++.+..+
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence            3333444555555555555554 44555555555566666555554 444444444444444444444444333445555


Q ss_pred             CCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127          123 STLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       123 ~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      .+|.++++++|.+. .+|..+ ++|++|++|+
T Consensus       505 ~nL~tLDL~nNdlq-~IPp~L-gnmtnL~hLe  534 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQ-QIPPIL-GNMTNLRHLE  534 (565)
T ss_pred             hhcceeccCCCchh-hCChhh-ccccceeEEE
Confidence            55555555555555 555544 5555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=8.1e-15  Score=100.45  Aligned_cols=60  Identities=30%  Similarity=0.314  Sum_probs=47.2

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEccc-CcCC
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF-NNLS   64 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~-~~~~   64 (155)
                      ...+.+..|+|+ .+|+.+|..+++|+.|++++|.|+.+.|++|.+++.+..+.+-+ |.++
T Consensus        69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            456888899999 89999998899999999999999877787787776665554444 5554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.47  E-value=8.2e-14  Score=87.51  Aligned_cols=121  Identities=27%  Similarity=0.399  Sum_probs=33.5

Q ss_pred             CccEEEccCccccccCCcccc-CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhh-hCCCCCceEE
Q 036127           28 YLKALFLDKNMFHGKIPSALS-KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLV  105 (155)
Q Consensus        28 ~l~~l~l~~n~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~  105 (155)
                      .++.|++.+|.|+ .+ ..+. .+.+|+.|++++|.+.. . ..+..++.|+.|++++|.++. +...+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            4555666666655 22 1232 34556666666666552 2 234455566666666666652 22222 2455666666


Q ss_pred             eeCccccccCC-ccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceec
Q 036127          106 LGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLD  154 (155)
Q Consensus       106 l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~  154 (155)
                      +++|++...-. ..+..+++|+.+++.+|+++ ..+.   .+...+|+|+.||
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEET
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeC
Confidence            66665544211 23445566666666666665 3232   1224456666555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.47  E-value=5.9e-16  Score=106.37  Aligned_cols=140  Identities=31%  Similarity=0.410  Sum_probs=99.8

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      +..+++.+|.++ ..|+..- .|..+++++...|.++ .+|+.++.+.+|.-++++.|.+. ..| .|.++..|..+.++
T Consensus       162 l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g  236 (565)
T KOG0472|consen  162 LSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVG  236 (565)
T ss_pred             HHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhc
Confidence            344556666666 5555555 3666777777777766 66667777777777777777776 455 56777777777777


Q ss_pred             cccccccCchhhh-CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127           84 YNKLHGEIPHEIA-NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL  153 (155)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l  153 (155)
                      .|.+. .+|.... .++++.++++.+|+++. .|..++-+++|.++++++|.++ .+|... +++ +|+.|
T Consensus       237 ~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sL-gnl-hL~~L  302 (565)
T KOG0472|consen  237 ENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSL-GNL-HLKFL  302 (565)
T ss_pred             ccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCccc-ccc-eeeeh
Confidence            77766 6666554 77888888888888877 6777788888888888888888 888777 766 66654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.43  E-value=2.8e-13  Score=85.12  Aligned_cols=125  Identities=27%  Similarity=0.324  Sum_probs=53.2

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      .++.|++++|.++ .+. .+...+.+++.|++++|.++ .+. .+..++.|+.|++++|.+....+.....+++|+.|++
T Consensus        20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            4788999999998 664 33335789999999999998 333 5778999999999999998443333346899999999


Q ss_pred             ecccccccC-chhhhCCCCCceEEeeCccccccC---CccccCCCCCcEEEcc
Q 036127           83 EYNKLHGEI-PHEIANLLNLEDLVLGMNILVGVF---PAAIFNMSTLKVLMLI  131 (155)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~l~  131 (155)
                      ++|++.... -..+..+++|+.+++.+|+++...   ...+..+|+|+.||-.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            999987422 356778999999999999998631   1245678999988753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=6.5e-15  Score=104.98  Aligned_cols=130  Identities=31%  Similarity=0.510  Sum_probs=66.0

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      +.++++.|++. .+|..++ .+ -|+.+.+++|.++ ..|..++....|..+|.+.|.+. ..|+.++.+.+|+.+.+.+
T Consensus       124 t~l~ls~NqlS-~lp~~lC-~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  124 TFLDLSSNQLS-HLPDGLC-DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             HHhhhccchhh-cCChhhh-cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence            34445555555 4555544 22 2555555555554 44444554455555555555554 3444455555555555555


Q ss_pred             ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCccc
Q 036127           85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI  143 (155)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  143 (155)
                      |++. .+|..+..+ .|..|+++.|+++. +|..|..|+.|+++-+.+|++. ..|..+
T Consensus       199 n~l~-~lp~El~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  199 NHLE-DLPEELCSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             hhhh-hCCHHHhCC-ceeeeecccCceee-cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            5554 445554422 24445555555544 4555555555555555555555 444433

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=3.4e-12  Score=95.07  Aligned_cols=107  Identities=34%  Similarity=0.489  Sum_probs=73.8

Q ss_pred             ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeC
Q 036127           29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM  108 (155)
Q Consensus        29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (155)
                      ++.|++++|.+.+..|..+..+++|+.|++++|.+....|..++.+++|+.|++++|.+++..|..+..+++|+.|++.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677777777766677777777777777777777666666677777777777777777767777777777777777777


Q ss_pred             ccccccCCccccCC-CCCcEEEccCCcc
Q 036127          109 NILVGVFPAAIFNM-STLKVLMLINNSL  135 (155)
Q Consensus       109 ~~~~~~~~~~~~~~-~~L~~l~l~~n~~  135 (155)
                      |.+++.+|..+... .++..+++.+|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            77776666655442 3455666666643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.38  E-value=2.3e-14  Score=106.87  Aligned_cols=125  Identities=31%  Similarity=0.419  Sum_probs=87.9

Q ss_pred             CCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEe
Q 036127           27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVL  106 (155)
Q Consensus        27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  106 (155)
                      +.|+.|++.+|.++..+.+.+.+.++|+.|+++.|++.......+..+..|+.|++++|+++ .+|..+..++.|++|..
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            34666677777777666667777778888888888777433456677777888888888877 67777777788888877


Q ss_pred             eCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          107 GMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      .+|.+.. .| .+..+++|+.+|++.|.++...-... ...|+|++||+
T Consensus       438 hsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdl  483 (1081)
T KOG0618|consen  438 HSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDL  483 (1081)
T ss_pred             cCCceee-ch-hhhhcCcceEEecccchhhhhhhhhh-CCCcccceeec
Confidence            7777766 45 66777888888888887762222222 23367777775

>PLN03210 Resistant to P

Probab=99.37  E-value=8.8e-12  Score=98.54  Aligned_cols=80  Identities=20%  Similarity=0.255  Sum_probs=36.9

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +|+.|++.++.+. .++.... .+++|+.++++++......| .+..+++|+.|++.+|......|..+..+++|+.|++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             CCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            3445555555544 4444433 45555555555443221223 2344455555555554433344444445555555555


Q ss_pred             ecc
Q 036127           83 EYN   85 (155)
Q Consensus        83 ~~~   85 (155)
                      ++|
T Consensus       689 ~~c  691 (1153)
T PLN03210        689 SRC  691 (1153)
T ss_pred             CCC
Confidence            443

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=99.37  E-value=4.1e-12  Score=94.63  Aligned_cols=105  Identities=30%  Similarity=0.537  Sum_probs=52.4

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      +.|++++|.+++.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....|..++.+++|+.|++++
T Consensus       421 ~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        421 DGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            3445555555544554444 455555555555555544554555555555555555555444455555555555555555


Q ss_pred             ccccccCchhhhCC-CCCceEEeeCcc
Q 036127           85 NKLHGEIPHEIANL-LNLEDLVLGMNI  110 (155)
Q Consensus        85 ~~~~~~~~~~~~~~-~~L~~l~l~~~~  110 (155)
                      |.+++..|..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            55555555444332 233444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.35  E-value=2.3e-13  Score=93.75  Aligned_cols=13  Identities=23%  Similarity=0.613  Sum_probs=6.0

Q ss_pred             CccEEEccCCccc
Q 036127            3 SISDIRLTNNRLS   15 (155)
Q Consensus         3 ~l~~l~l~~~~~~   15 (155)
                      +|+.|++++|.+.
T Consensus        82 ~L~~L~l~~~~~~   94 (319)
T cd00116          82 GLQELDLSDNALG   94 (319)
T ss_pred             ceeEEEccCCCCC
Confidence            3444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.33  E-value=4.3e-12  Score=95.65  Aligned_cols=77  Identities=22%  Similarity=0.408  Sum_probs=38.3

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+|+.|++++|.++ .+|..+.   .+++.|++++|.+. .+|..+.  .+|+.|++++|.+. ..|..+.  .+|+.|+
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~  289 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLS  289 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence            35667777777766 5665433   34555555555555 3343332  24555555555444 2333221  2444445


Q ss_pred             eeccccc
Q 036127           82 LEYNKLH   88 (155)
Q Consensus        82 l~~~~~~   88 (155)
                      +++|+++
T Consensus       290 Ls~N~Lt  296 (754)
T PRK15370        290 VYDNSIR  296 (754)
T ss_pred             CCCCccc
Confidence            5444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.33  E-value=8.7e-14  Score=103.90  Aligned_cols=128  Identities=30%  Similarity=0.388  Sum_probs=95.1

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCc-cccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .|+.|++.+|.+++..-+.+. .+.+|++|++++|.+. ..|+ .+.+++.|+.|++++|.++ ..|..+..++.|++|.
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhc-cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence            356677888888855444444 7788888888888887 4444 4777888888888888887 6677788888888888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      ..+|.+. .+| .+..+++|+.++++.|.++..........++|++|++++|.-
T Consensus       437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            8888876 566 777788888888888887754332333337888888888864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.32  E-value=4.8e-12  Score=95.39  Aligned_cols=98  Identities=27%  Similarity=0.478  Sum_probs=68.3

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +++.|++++|.++ .+|..++   ++|+.|++++|.++ .+|..+.  .+|+.|++++|.+. ..|..+.  .+|+.|++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            5777888888888 6776654   57888888888877 4555443  36888888888877 5555443  46888888


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                      ++|+++ .+|..+.  ++|+.|++++|.++.
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCcccc
Confidence            888777 4565442  467777777776654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.29  E-value=1.5e-13  Score=94.32  Aligned_cols=142  Identities=24%  Similarity=0.313  Sum_probs=117.1

Q ss_pred             EEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec-
Q 036127            6 DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY-   84 (155)
Q Consensus         6 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-   84 (155)
                      .++.++.+++ ++|..+.   +....+++..|+|+...+.+|..+++|+.+|++.|.+....|+.|.++.++..|.+-+ 
T Consensus        50 ~VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             eEEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence            4677888888 8888765   6778899999999977777899999999999999999989999999999887776655 


Q ss_pred             ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccce
Q 036127           85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEV  152 (155)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~  152 (155)
                      |+++......+..+..++.+.++-|.+......++..++++.-|.+.+|.+. .++...+..+..++.
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~t  192 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKT  192 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccch
Confidence            8898555567888999999888888888877788999999999999999887 777644455555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=8e-13  Score=91.07  Aligned_cols=132  Identities=31%  Similarity=0.394  Sum_probs=67.3

Q ss_pred             ccEEEccCCccccc----CCchhhcCC-CCccEEEccCcccccc----CCccccCCCCCcEEEcccCcCCCC----cchh
Q 036127            4 ISDIRLTNNRLSGE----LPKNIGSYL-PYLKALFLDKNMFHGK----IPSALSKCKQLQQLNLQFNNLSGA----IPKE   70 (155)
Q Consensus         4 l~~l~l~~~~~~~~----~~~~~~~~l-~~l~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~   70 (155)
                      |+.|++++|.+++.    +...+. .+ ++++.+++++|.+++.    ....+..+++|+.+++++|.+...    .+..
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            66677776666521    112222 34 5667777777666521    122344455666677666665521    1122


Q ss_pred             hhCCCcccEEEeecccccccC----chhhhCCCCCceEEeeCccccccCCcccc-----CCCCCcEEEccCCccc
Q 036127           71 IGNLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVGVFPAAIF-----NMSTLKVLMLINNSLS  136 (155)
Q Consensus        71 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~n~~~  136 (155)
                      +...++|+.|++++|.+++..    ...+..+++|+++++++|.+++.....+.     ..+.|+.+++++|.++
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            334456666666666654322    22334455666666666665542111111     1245666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.27  E-value=8.8e-11  Score=93.03  Aligned_cols=126  Identities=23%  Similarity=0.258  Sum_probs=87.5

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +|+.|.+.++.++ .+|..+  .+.+|+.|++.++.+. ..+..+..+++|+.++++++......|. +..+++|+.|++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence            3566666666666 566554  3578888888888877 5677777888888888887654434453 677888899998


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNS  134 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~  134 (155)
                      .+|.....+|..+..+++|+.+++.+|.....+|..+ .+++|+.+++++|.
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            8876555778888888888888888875333345433 45566666666553

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.25  E-value=9e-12  Score=65.29  Aligned_cols=60  Identities=35%  Similarity=0.504  Sum_probs=43.8

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCc
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN   62 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~   62 (155)
                      ++|+.|++++|.++ .+|...+..+++|+++++++|.++...+.+|..+++|+.+++++|.
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            46777777777777 7777777677777777777777775555667777777777777765

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=9.2e-13  Score=94.25  Aligned_cols=143  Identities=27%  Similarity=0.418  Sum_probs=124.4

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      .|+.+.+..|.+. .+|..+. .+..+..++++.|++. ..|..+..++ |+.+.+++|.++ ..|...+...+|..++.
T Consensus        99 ~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~  173 (722)
T KOG0532|consen   99 SLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDV  173 (722)
T ss_pred             HHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhh
Confidence            3556777888888 8898888 7999999999999998 7787766665 889999999988 78888888899999999


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +.|.+. .+|..++.+.+|+.+++.+|.+.. .|..++.++ |..||++.|+++ .+|-.| .+|.+|++|.|
T Consensus       174 s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis-~iPv~f-r~m~~Lq~l~L  241 (722)
T KOG0532|consen  174 SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS-YLPVDF-RKMRHLQVLQL  241 (722)
T ss_pred             hhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee-ecchhh-hhhhhheeeee
Confidence            999998 789999999999999999999988 566677554 899999999999 999999 99999998854

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.22  E-value=4.4e-11  Score=90.25  Aligned_cols=70  Identities=26%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             cccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           76 MLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        76 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +|+.|++++|.++ .+|..   .++|+.|++++|.++. +|..   ..+|+.+++++|.++ .+|..+ +.+++|..+++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl-~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHH-hhccCCCeEEC
Confidence            3445555555544 23321   1345555555555544 3321   123455566666665 566555 55666665553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=2.8e-12  Score=85.91  Aligned_cols=130  Identities=25%  Similarity=0.304  Sum_probs=100.1

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      .|+.++++.|.++ .+...+. -.|.++.|++++|.+. .+.. +..+.+|+.||+++|.+. ...++-..+.+.++|.+
T Consensus       285 ~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhh-hccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            4778899999888 8887776 6789999999999887 3333 777888999999999887 55566667778888888


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCcccccc-CCccccCCCCCcEEEccCCcccCCCC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGV-FPAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      ..|.+.  ..+.++.+.+|..+++.+|+|... ....++.+|-|+++.+.+|++. .++
T Consensus       360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~v  415 (490)
T KOG1259|consen  360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSV  415 (490)
T ss_pred             hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccc
Confidence            888874  345667778888889999887542 1145677888888888889887 544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=2.2e-11  Score=86.48  Aligned_cols=143  Identities=39%  Similarity=0.585  Sum_probs=74.1

Q ss_pred             ccEEEccCCcccccCCchhhcCCC-CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLP-YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~-~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      ++.+++.++.++ ++++... .+. +++.++++.|.+. ..+..+..++.|+.|+++.|.+. ..+...+..+.|+.+++
T Consensus       118 l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             eeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            455555555555 5555444 332 5566666666555 33344455555555555555555 33333334455555555


Q ss_pred             ecccccccCchh-----------------------hhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCC
Q 036127           83 EYNKLHGEIPHE-----------------------IANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSL  139 (155)
Q Consensus        83 ~~~~~~~~~~~~-----------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (155)
                      ++|+++ .+|..                       +..+..+..+.+.+|++.. .+..+..+++++++++++|.++ .+
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i  270 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SI  270 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc-cc
Confidence            555554 33333                       2333333333333333332 2344555666777777777777 66


Q ss_pred             CcccccCCCccceecC
Q 036127          140 PSRIDLSLPTVEVLDC  155 (155)
Q Consensus       140 ~~~~~~~~~~L~~l~l  155 (155)
                      +. + +...+++.+|+
T Consensus       271 ~~-~-~~~~~l~~L~~  284 (394)
T COG4886         271 SS-L-GSLTNLRELDL  284 (394)
T ss_pred             cc-c-cccCccCEEec
Confidence            55 3 56666666653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.17  E-value=5.1e-11  Score=62.39  Aligned_cols=61  Identities=39%  Similarity=0.453  Sum_probs=42.0

Q ss_pred             CcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127           75 TMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      ++|+.+++++|.++...+..+..+++|+++++++|.++...+.+|.++++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566777777777644445666777777777777777766666777777777777777654

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.16  E-value=6.7e-11  Score=89.31  Aligned_cols=84  Identities=24%  Similarity=0.289  Sum_probs=65.9

Q ss_pred             CCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEc
Q 036127           51 KQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLML  130 (155)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l  130 (155)
                      .+|+.|++++|.+. ..|..   .++|+.|++++|.++ .+|..   +.+|+.+++.+|.++. +|..+..+++++.+++
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEEC
Confidence            35778888888877 34432   357899999999998 46654   3467889999999986 7888999999999999


Q ss_pred             cCCcccCCCCccc
Q 036127          131 INNSLSGSLPSRI  143 (155)
Q Consensus       131 ~~n~~~~~~~~~~  143 (155)
                      ++|++++..+..+
T Consensus       453 s~N~Ls~~~~~~L  465 (788)
T PRK15387        453 EGNPLSERTLQAL  465 (788)
T ss_pred             CCCCCCchHHHHH
Confidence            9999997766543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=4.5e-11  Score=84.86  Aligned_cols=125  Identities=34%  Similarity=0.463  Sum_probs=94.3

Q ss_pred             EEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCC-CCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            6 DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCK-QLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         6 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      .+....+.+. .-...+. .++.+..+++.+|.++ .++....... +|+.+++++|.+. ..+...+.++.|+.|+++.
T Consensus        97 ~l~~~~~~~~-~~~~~~~-~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLR-SNISELL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccc-cCchhhh-cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            3566666654 2233344 4678999999999998 6666666664 8999999999998 5556678999999999999


Q ss_pred             ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127           85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      |++. .+|......+.|+.+++++|.+.. +|........|+.+.+++|...
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~  222 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII  222 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce
Confidence            9998 677766678899999999999887 4444344455777777777543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=6.5e-11  Score=79.49  Aligned_cols=121  Identities=25%  Similarity=0.280  Sum_probs=94.1

Q ss_pred             CCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEE
Q 036127           26 LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLV  105 (155)
Q Consensus        26 l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  105 (155)
                      +..++++++++|.|+ ....+..-.+.++.|+++.|.+.. .. .+..+++|+.||+++|.++ ....+-..+.+.+++.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            456888999999998 667777778899999999999873 22 3778889999999999887 5555656778889999


Q ss_pred             eeCccccccCCccccCCCCCcEEEccCCcccCCCC--cccccCCCccceec
Q 036127          106 LGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP--SRIDLSLPTVEVLD  154 (155)
Q Consensus       106 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~~L~~l~  154 (155)
                      +.+|.+-+.  +.+..+-+|..+++++|++. .+.  +.+ +++|.|+++.
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~I-G~LPCLE~l~  405 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHI-GNLPCLETLR  405 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhccc-ccccHHHHHh
Confidence            999977553  34566778899999999997 554  345 7788877653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=6.2e-10  Score=77.73  Aligned_cols=135  Identities=23%  Similarity=0.273  Sum_probs=65.1

Q ss_pred             CCCccEEEccCCcccccCC-chhhcCCCCccEEEccCccccccCCcc-ccCCCCCcEEEcccCcCCCCcc-hhhhCCCc-
Q 036127            1 MSSISDIRLTNNRLSGELP-KNIGSYLPYLKALFLDKNMFHGKIPSA-LSKCKQLQQLNLQFNNLSGAIP-KEIGNLTM-   76 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~-   76 (155)
                      |++++.|+++.|-+....+ ..+.+.+|+|+.|+++.|.+..-.... -..+.+++.|.++.|.++.... .....+|+ 
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            4566777777776653211 223346777777777777654111111 1123456666666665542211 11223344 


Q ss_pred             -----------------------ccEEEeecccccccCc--hhhhCCCCCceEEeeCccccccC-Ccc-----ccCCCCC
Q 036127           77 -----------------------LKGIYLEYNKLHGEIP--HEIANLLNLEDLVLGMNILVGVF-PAA-----IFNMSTL  125 (155)
Q Consensus        77 -----------------------L~~L~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~-~~~-----~~~~~~L  125 (155)
                                             |+.|++++|++. .++  ...+.++.|+.++++.+.+.+.. |..     ...+++|
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence                                   455555554443 222  23344555555555555544321 111     2234566


Q ss_pred             cEEEccCCccc
Q 036127          126 KVLMLINNSLS  136 (155)
Q Consensus       126 ~~l~l~~n~~~  136 (155)
                      ++|++..|.+.
T Consensus       304 ~~L~i~~N~I~  314 (505)
T KOG3207|consen  304 EYLNISENNIR  314 (505)
T ss_pred             eeeecccCccc
Confidence            66666666663

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=7.4e-10  Score=77.36  Aligned_cols=107  Identities=28%  Similarity=0.332  Sum_probs=69.1

Q ss_pred             CCccEEEccCCcccccCCc-hhhcCCCCccEEEccCccccccCC--ccccCCCCCcEEEcccCcCCCCcc-hhhhCCCcc
Q 036127            2 SSISDIRLTNNRLSGELPK-NIGSYLPYLKALFLDKNMFHGKIP--SALSKCKQLQQLNLQFNNLSGAIP-KEIGNLTML   77 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~l~~n~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L   77 (155)
                      ..|+.+.+.++... ..+. .....+++++.|+++.|-+...-+  .-...+++|+.|.++.|.+..-.. ..-..++++
T Consensus       121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            45788888888776 5553 233479999999999998773222  224568999999999998762111 122356789


Q ss_pred             cEEEeecccccccCc-hhhhCCCCCceEEeeCc
Q 036127           78 KGIYLEYNKLHGEIP-HEIANLLNLEDLVLGMN  109 (155)
Q Consensus        78 ~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~  109 (155)
                      +.|.++.|.++.... .....+|++..|.+..|
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            999999998763211 12233444444444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=7.4e-09  Score=79.77  Aligned_cols=126  Identities=23%  Similarity=0.342  Sum_probs=75.3

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCcc--ccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM--FHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~--~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +.+.+.++.+. .++....  .+++++|-+..|.  +.......|..++.|+.||+++|.-....|...+.+-+|++|++
T Consensus       526 rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  526 RRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             eEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            34445555554 4443332  3466666666664  33233333566677777777766544466777777777777777


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNS  134 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~  134 (155)
                      .+..++ .+|..+.++..|.+|++..+.....++.....+.+|+++.+....
T Consensus       603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            776666 667777777777777776654433345555666777777665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.76  E-value=5.9e-09  Score=71.02  Aligned_cols=135  Identities=17%  Similarity=0.166  Sum_probs=84.1

Q ss_pred             CCccEEEccCCcccccCCchhh---cCCCCccEEEccCccccccCCcc-------------ccCCCCCcEEEcccCcCCC
Q 036127            2 SSISDIRLTNNRLSGELPKNIG---SYLPYLKALFLDKNMFHGKIPSA-------------LSKCKQLQQLNLQFNNLSG   65 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~l~~n~~~~~~~~~-------------~~~~~~L~~l~l~~~~~~~   65 (155)
                      +.|+.++++.|.+....++.+.   ..+..|++|.+.+|.+.......             ...-+.|+.+...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            4688899999988755444332   34678888888888765221111             2234567888887777652


Q ss_pred             C----cchhhhCCCcccEEEeecccccccC----chhhhCCCCCceEEeeCcccccc----CCccccCCCCCcEEEccCC
Q 036127           66 A----IPKEIGNLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVGV----FPAAIFNMSTLKVLMLINN  133 (155)
Q Consensus        66 ~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n  133 (155)
                      .    ....|...+.|+.+.+..|.+....    ...+..++.|+.|++++|.++..    +..++..+++|+.+++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            2    2234555667777777777664222    23455677777777777766542    2345556667777777777


Q ss_pred             ccc
Q 036127          134 SLS  136 (155)
Q Consensus       134 ~~~  136 (155)
                      .+.
T Consensus       252 ll~  254 (382)
T KOG1909|consen  252 LLE  254 (382)
T ss_pred             ccc
Confidence            665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.62  E-value=3.6e-09  Score=63.37  Aligned_cols=82  Identities=29%  Similarity=0.429  Sum_probs=43.2

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      |+.+++++|.+. ++|+.+...++.++++++.+|.+. .+|..+..++.|+.+.++.|.+. ..|..+.++.++-.|+..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            344555555555 555554445555555555555555 44555555555555555555554 334444445555555555


Q ss_pred             ccccc
Q 036127           84 YNKLH   88 (155)
Q Consensus        84 ~~~~~   88 (155)
                      .|.+-
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.58  E-value=6.5e-08  Score=74.71  Aligned_cols=107  Identities=28%  Similarity=0.347  Sum_probs=88.6

Q ss_pred             CCccEEEccCCc--ccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccE
Q 036127            2 SSISDIRLTNNR--LSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKG   79 (155)
Q Consensus         2 ~~l~~l~l~~~~--~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   79 (155)
                      +++++|-+..|.  +. .++...+..|+.|++||+++|.--+.+|..++.+.+|+.|++.++.+. ..|..++.+..|.+
T Consensus       545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            457788888886  55 778877778999999999987655589999999999999999999988 88999999999999


Q ss_pred             EEeecccccccCchhhhCCCCCceEEeeCcc
Q 036127           80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNI  110 (155)
Q Consensus        80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  110 (155)
                      |++..+......|.....+.+|+++.+....
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccc
Confidence            9999876554556666778899998886553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.58  E-value=2.5e-07  Score=58.93  Aligned_cols=124  Identities=21%  Similarity=0.207  Sum_probs=83.0

Q ss_pred             EEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc
Q 036127            6 DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN   85 (155)
Q Consensus         6 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   85 (155)
                      .+++++..+. .+.. +...+-+...+++++|.+. . .+.|..++.|.+|.+++|.++...|..-..++++..|.+.+|
T Consensus        23 e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   23 ELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccc-chhh-ccccccccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            3455555444 2211 2223456778888888876 2 345778888999999999988666665555678888999988


Q ss_pred             cccccC-chhhhCCCCCceEEeeCccccccC---CccccCCCCCcEEEccCC
Q 036127           86 KLHGEI-PHEIANLLNLEDLVLGMNILVGVF---PAAIFNMSTLKVLMLINN  133 (155)
Q Consensus        86 ~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~l~~n  133 (155)
                      .+.... -..+..|++|+.+.+-+|+++..-   --.+..+|+++.||+++-
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            876322 234567888999988888876531   123556788888887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.57  E-value=4.7e-10  Score=83.02  Aligned_cols=129  Identities=29%  Similarity=0.394  Sum_probs=84.4

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      |...++++|.+. .+...+. -++.++.|++++|+++ .+. .+..++.|++||++.|.+. ..|..-.--.+|+.|.+.
T Consensus       166 L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            455677777777 5555544 6788888888888877 333 6777888888888888876 333311112247888888


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccccC-CccccCCCCCcEEEccCCcccCCCC
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVF-PAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      +|.++  ....+.++.+|+.|+++.|-+.+-- ...+..+..|+.|++.+|++. .-|
T Consensus       241 nN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~-c~p  295 (1096)
T KOG1859|consen  241 NNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC-CAP  295 (1096)
T ss_pred             ccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc-cCH
Confidence            88765  3345566777888888887655421 123445567777888888775 444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.49  E-value=1e-06  Score=52.83  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhh
Q 036127           17 ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA   96 (155)
Q Consensus        17 ~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   96 (155)
                      .++..++..+.+++.+.+.. .+......+|..+.+++.+.+..+ +.......|..+.+++.+.+.. .+.......+.
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            35566666777888888875 455455566888888999998775 5544456677787889988865 44434455667


Q ss_pred             CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127           97 NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE  151 (155)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~  151 (155)
                      .+++++.+.+..+ +.......+.++ .++.+.+.. .+. .++...|.++++|+
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            7888998888765 555455667776 888888765 555 66666667777764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.47  E-value=4.4e-08  Score=66.86  Aligned_cols=133  Identities=23%  Similarity=0.225  Sum_probs=66.5

Q ss_pred             CccEEEccCCcccccCC---chhhcCCCCccEEEccCccccc----cCCccccCCCCCcEEEcccCcCCCC----cchhh
Q 036127            3 SISDIRLTNNRLSGELP---KNIGSYLPYLKALFLDKNMFHG----KIPSALSKCKQLQQLNLQFNNLSGA----IPKEI   71 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~---~~~~~~l~~l~~l~l~~n~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~   71 (155)
                      .|+++.+.+|.+...-.   ...++..+.++.+.++.|.|..    ....++..+++|+.||+++|.++..    ....+
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL  237 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL  237 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence            35555666665552111   1122334556666666665541    1122345566666666666665532    22234


Q ss_pred             hCCCcccEEEeecccccccCchhh-----hCCCCCceEEeeCcccccc----CCccccCCCCCcEEEccCCcc
Q 036127           72 GNLTMLKGIYLEYNKLHGEIPHEI-----ANLLNLEDLVLGMNILVGV----FPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        72 ~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      ..+++|+.+++++|.+.......+     ...+.|..+.+.+|.++..    +...+...+.|..|++++|.+
T Consensus       238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            455566666666666544333222     1245666666666655431    112233455666666666666

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=4.5e-09  Score=70.61  Aligned_cols=58  Identities=24%  Similarity=0.203  Sum_probs=40.8

Q ss_pred             hCCCCCceEEeeCcc-ccccCCccccCCCCCcEEEccCCcccCCCCccc--ccCCCccceecC
Q 036127           96 ANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI--DLSLPTVEVLDC  155 (155)
Q Consensus        96 ~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~~~L~~l~l  155 (155)
                      ..++++.+|++++|. ++.....++..++.|+++.++.|+.-  +|..+  +.+.|.|.+||+
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDV  370 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEe
Confidence            467888899988874 44444467778888999999888753  33322  166888888874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.44  E-value=7.4e-09  Score=62.04  Aligned_cols=108  Identities=26%  Similarity=0.319  Sum_probs=70.0

Q ss_pred             ccEEEccCccccccCCcc---ccCCCCCcEEEcccCcCCCCcchhhhC-CCcccEEEeecccccccCchhhhCCCCCceE
Q 036127           29 LKALFLDKNMFHGKIPSA---LSKCKQLQQLNLQFNNLSGAIPKEIGN-LTMLKGIYLEYNKLHGEIPHEIANLLNLEDL  104 (155)
Q Consensus        29 l~~l~l~~n~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  104 (155)
                      +..++++.+++- ..+++   +.....|+.+++++|.+. ..|..|.. ++..+.+++..|.++ .+|..+..++.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344566666654 23333   233455677778887776 44444443 457777788877777 677777777888888


Q ss_pred             EeeCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127          105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS  141 (155)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  141 (155)
                      +++.|.+.. .|..+..+.++..|+..+|.+. .+|-
T Consensus       106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~  140 (177)
T KOG4579|consen  106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDV  140 (177)
T ss_pred             ccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcH
Confidence            888887766 4555555777777777777766 5553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.41  E-value=3.9e-07  Score=44.14  Aligned_cols=37  Identities=30%  Similarity=0.621  Sum_probs=23.4

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCcccc
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFH   40 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~   40 (155)
                      ++|+.|++++|.++ .+|+.+. .|++|+.|++++|.++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCC
Confidence            35667777777777 6666555 6777777777777665

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=7.6e-08  Score=68.99  Aligned_cols=104  Identities=29%  Similarity=0.354  Sum_probs=61.8

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+++.+++.+|.++ .+...+. .+++|+++++++|.|+...  .+..++.|+.|++.+|.+..  ...+..+..|+.++
T Consensus        95 ~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   95 KSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD  168 (414)
T ss_pred             cceeeeeccccchh-hcccchh-hhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence            45677777777777 5544233 5677777777777776322  23455567777777777652  22344466777777


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNIL  111 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  111 (155)
                      +++|.+...-+.....+..++.+.+.+|.+
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCch
Confidence            777776533220034455566666666644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.39  E-value=5.5e-08  Score=73.34  Aligned_cols=147  Identities=17%  Similarity=0.247  Sum_probs=93.1

Q ss_pred             CccEEEccCCccc-ccCCchhhcCCCCccEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            3 SISDIRLTNNRLS-GELPKNIGSYLPYLKALFLDKNMFHG-KIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         3 ~l~~l~l~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +|+.|++++...- ...+..+...+|.|+.|.+.+-.+.. ....-..+.++|..||++++.+...  ...+.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            5777788764322 13344455568889999888876542 1122334567888889998888733  567788888888


Q ss_pred             Eeecccccc-cCchhhhCCCCCceEEeeCccccccC------CccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127           81 YLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVF------PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE  151 (155)
Q Consensus        81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~------~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~  151 (155)
                      .+.+-.+.. ..-..+.++.+|++||++..+.....      -+.-..+|.|+.+|.+++.+...+-+.+....|+|+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            777655542 12234567888999998876543311      122335788899999888876554444444455554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.39  E-value=2.9e-09  Score=78.97  Aligned_cols=102  Identities=28%  Similarity=0.320  Sum_probs=58.4

Q ss_pred             ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchh-hhCCCCCceEEee
Q 036127           29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHE-IANLLNLEDLVLG  107 (155)
Q Consensus        29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~l~  107 (155)
                      |.+.+++.|.+. ....++.-++.++.|+++.|+++..  ..+..+++|++||+++|.++ .+|.- ...| .|..|+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            444445555554 4444555556667777777766522  24566667777777777665 33322 2222 36666777


Q ss_pred             CccccccCCccccCCCCCcEEEccCCcccC
Q 036127          108 MNILVGVFPAAIFNMSTLKVLMLINNSLSG  137 (155)
Q Consensus       108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (155)
                      +|.++..  -.+.++.+|+.||+++|-+.+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhc
Confidence            7666553  234566667777777776653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.34  E-value=7.8e-08  Score=68.96  Aligned_cols=126  Identities=29%  Similarity=0.363  Sum_probs=85.7

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      .++.+++..|.+. .+-..+. .+.+++.+++..|.+. .....+..+++|+.+++++|.+...  ..+..++.|+.|++
T Consensus        73 ~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   73 SLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             hHHhhccchhhhh-hhhcccc-cccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            3445556667666 3333333 6788888888888887 3343366788888888888888732  23455666888888


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCccc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~  136 (155)
                      .+|.+..  ...+..+..|+.+++++|.++...+ . ...+.+++.+.+.+|.+.
T Consensus       148 ~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            8888862  2344447788888888888877433 1 456677777878777775

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.33  E-value=9.1e-07  Score=42.85  Aligned_cols=34  Identities=38%  Similarity=0.583  Sum_probs=12.3

Q ss_pred             ccEEEeecccccccCchhhhCCCCCceEEeeCccc
Q 036127           77 LKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNIL  111 (155)
Q Consensus        77 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  111 (155)
                      |+.|++++|+++ .+|..+..+++|+.+++++|++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            334444444433 2233333344444444444433

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.27  E-value=3.8e-06  Score=53.69  Aligned_cols=121  Identities=22%  Similarity=0.262  Sum_probs=85.2

Q ss_pred             ccEEEccCccccccCCcccc-CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127           29 LKALFLDKNMFHGKIPSALS-KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG  107 (155)
Q Consensus        29 l~~l~l~~n~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  107 (155)
                      =+.+++.+.++. .... ++ .......+|+++|.+..  -..|..++.|.+|.+..|.++...|.--.-++.+..|.+.
T Consensus        21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc-chhh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            344555555544 1111 11 12356788999998762  2357788899999999999996656555556889999999


Q ss_pred             CccccccCC-ccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceec
Q 036127          108 MNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLD  154 (155)
Q Consensus       108 ~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~  154 (155)
                      +|++..... ..+..+|+|+++.+-+|+++ ....   .+...+|+|+.||
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LD  146 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLD  146 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCcceEee
Confidence            998865321 45678899999999999998 4432   2336789999887

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.24  E-value=5.6e-06  Score=49.63  Aligned_cols=118  Identities=24%  Similarity=0.279  Sum_probs=66.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+|+.+.+.. .++ .++...+..+++++.+.+.++ +......+|..+.+++.+.+.. .+.......|..++.++.+.
T Consensus        12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            4688888875 566 788888878889999999886 5545566788888999999976 44324456777799999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK  126 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~  126 (155)
                      +..+ +.......+.++ .++.+.+.. .+......+|.++++|+
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            9765 543445667776 888888775 35554556777776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=1.2e-06  Score=59.21  Aligned_cols=83  Identities=25%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             CCccEEEccCCcccccCC-chhhcCCCCccEEEccCccccccCCccc-cCCCCCcEEEcccCcCCCCc-chhhhCCCccc
Q 036127            2 SSISDIRLTNNRLSGELP-KNIGSYLPYLKALFLDKNMFHGKIPSAL-SKCKQLQQLNLQFNNLSGAI-PKEIGNLTMLK   78 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~   78 (155)
                      +.++.+++.+|.+++.-. ..+.+.||.+++|+++.|++...+ +.. ....+|+.+.+.+..+.... .+....+|.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            346778888888873211 123357899999999999887322 222 35568888888887765332 23444566666


Q ss_pred             EEEeecc
Q 036127           79 GIYLEYN   85 (155)
Q Consensus        79 ~L~l~~~   85 (155)
                      .+.++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            6666666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.96  E-value=1e-05  Score=61.43  Aligned_cols=111  Identities=15%  Similarity=0.134  Sum_probs=81.3

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKG   79 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~   79 (155)
                      ||+|+.|.+++-.+..+=-..+...+|+|..||+++..++..  .+++.+++|+.|.+.+-.+.. ..-..+..+++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            588999999987765221234456899999999999998833  668889999999988766652 22345668999999


Q ss_pred             EEeecccccccCchh-------hhCCCCCceEEeeCcccccc
Q 036127           80 IYLEYNKLHGEIPHE-------IANLLNLEDLVLGMNILVGV  114 (155)
Q Consensus        80 L~l~~~~~~~~~~~~-------~~~~~~L~~l~l~~~~~~~~  114 (155)
                      ||+++.... ..+..       -..+|.|+.++.+++.+...
T Consensus       225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             eeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            999987543 22211       23578999999999877653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.91  E-value=1.8e-05  Score=53.17  Aligned_cols=135  Identities=21%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             CCCccEEEccCCcccccCCchhh---cCCCCccEEEccCccccccCCcccc-------------CCCCCcEEEcccCcCC
Q 036127            1 MSSISDIRLTNNRLSGELPKNIG---SYLPYLKALFLDKNMFHGKIPSALS-------------KCKQLQQLNLQFNNLS   64 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~l~~n~~~~~~~~~~~-------------~~~~L~~l~l~~~~~~   64 (155)
                      |+.++.++++.|.+....|..+.   ..-+.+.+|.+.+|.+.......++             .-+.|+.+....|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            67888999999988876665543   2346788899998876522222122             2356777777666654


Q ss_pred             CCcch-----hhhCCCcccEEEeecccccccCch-----hhhCCCCCceEEeeCcccccc----CCccccCCCCCcEEEc
Q 036127           65 GAIPK-----EIGNLTMLKGIYLEYNKLHGEIPH-----EIANLLNLEDLVLGMNILVGV----FPAAIFNMSTLKVLML  130 (155)
Q Consensus        65 ~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l  130 (155)
                       ..+.     .+.....+..+.+..|.+......     .+..+.+|..|++++|-++..    ...+++..+.|+.+.+
T Consensus       171 -ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         171 -NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             -cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence             2221     122233455555555554422111     122345666666666655431    2233444555566666


Q ss_pred             cCCccc
Q 036127          131 INNSLS  136 (155)
Q Consensus       131 ~~n~~~  136 (155)
                      .+|.++
T Consensus       250 nDClls  255 (388)
T COG5238         250 NDCLLS  255 (388)
T ss_pred             cchhhc
Confidence            655554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=0.00037  Score=49.85  Aligned_cols=70  Identities=11%  Similarity=0.263  Sum_probs=43.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccC-cCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN-NLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L   80 (155)
                      ..++.|++++|.++ .+|.    -.++|+.|.+.++.--...|..+  ..+|+.|.+.+| .+. ..|.      +|+.|
T Consensus        52 ~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL  117 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence            56788999988888 6772    23568888888743222455433  247888888877 333 3332      35555


Q ss_pred             Eeecc
Q 036127           81 YLEYN   85 (155)
Q Consensus        81 ~l~~~   85 (155)
                      .+..+
T Consensus       118 ~L~~n  122 (426)
T PRK15386        118 EIKGS  122 (426)
T ss_pred             EeCCC
Confidence            55544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=7.6e-07  Score=59.64  Aligned_cols=98  Identities=24%  Similarity=0.375  Sum_probs=75.7

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCc-chhhhCCCcccEEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI-PKEIGNLTMLKGIY   81 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~   81 (155)
                      ++++|++-++++. +|  .+..+|+.+++|.++-|.|+..  ..+..|+.|+.|.+..|.+.... -.++.++++|+.|+
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4677888888887 54  3455799999999999999843  34678999999999999987433 25677899999999


Q ss_pred             eecccccccCchh-----hhCCCCCceEE
Q 036127           82 LEYNKLHGEIPHE-----IANLLNLEDLV  105 (155)
Q Consensus        82 l~~~~~~~~~~~~-----~~~~~~L~~l~  105 (155)
                      +..|.+-+..+..     +.-+|+|+.|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999887655443     45677887763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=1e-05  Score=54.93  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=42.8

Q ss_pred             hhCCCcccEEEeeccc-ccccCchhhhCCCCCceEEeeCccccccCCc---cccCCCCCcEEEccCC
Q 036127           71 IGNLTMLKGIYLEYNK-LHGEIPHEIANLLNLEDLVLGMNILVGVFPA---AIFNMSTLKVLMLINN  133 (155)
Q Consensus        71 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l~~n  133 (155)
                      ...++++..||++++. ++...-..+..++.|+++.+++|.  +.+|.   .+...|+|.+|++.++
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            4467888999998764 443334556778899999998883  33443   3567788999988655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=2.1e-06  Score=57.61  Aligned_cols=99  Identities=21%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             CCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEc
Q 036127           52 QLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLML  130 (155)
Q Consensus        52 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l  130 (155)
                      +.+.|.+.++.+.+  .+....++.|+.|.++.|+++  ....+..|.+|+.+.+..|.|.+.-. ..+.++++|+.|++
T Consensus        20 ~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccH--HHHHHhcccceeEEeeccccc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            34455555555541  233445666667777776665  23344566666666666666654211 23456677777777


Q ss_pred             cCCcccCCCCccc----ccCCCccceec
Q 036127          131 INNSLSGSLPSRI----DLSLPTVEVLD  154 (155)
Q Consensus       131 ~~n~~~~~~~~~~----~~~~~~L~~l~  154 (155)
                      ..|+-.+..+...    ...+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            7665554444321    13466666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.60  E-value=3.9e-05  Score=50.81  Aligned_cols=87  Identities=22%  Similarity=0.153  Sum_probs=41.9

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEEEcccC--cCCCCcchhhhCCCcccEEEeeccccccc-CchhhhCCCCC
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN--NLSGAIPKEIGNLTMLKGIYLEYNKLHGE-IPHEIANLLNL  101 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L  101 (155)
                      .+..++.+.+.+..++  ....+..+++|+.|.++.|  ++...++.....+++|+++++++|+++.. .-..+..+.+|
T Consensus        41 ~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3445555555555544  1223455566666666666  33333333334446666666666665410 01122334455


Q ss_pred             ceEEeeCccccc
Q 036127          102 EDLVLGMNILVG  113 (155)
Q Consensus       102 ~~l~l~~~~~~~  113 (155)
                      ..+++..|..+.
T Consensus       119 ~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  119 KSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcccCCccc
Confidence            555555554433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.55  E-value=4.7e-05  Score=50.48  Aligned_cols=102  Identities=25%  Similarity=0.290  Sum_probs=68.3

Q ss_pred             CCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc--cccccCchhhhCCCCCceEEeeCcccccc-CCccccCCCCCc
Q 036127           50 CKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN--KLHGEIPHEIANLLNLEDLVLGMNILVGV-FPAAIFNMSTLK  126 (155)
Q Consensus        50 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~  126 (155)
                      ...++.+.+.+..++.  -..+..+++|+.|.++.|  .+.+.++-....+++|+++++++|.+... --..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3445555555555441  234567789999999999  55555555556679999999999988641 012345566788


Q ss_pred             EEEccCCcccCCCC---cccccCCCccceec
Q 036127          127 VLMLINNSLSGSLP---SRIDLSLPTVEVLD  154 (155)
Q Consensus       127 ~l~l~~n~~~~~~~---~~~~~~~~~L~~l~  154 (155)
                      .++++.|..+ ..-   ..+|.-+++|.+||
T Consensus       120 ~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  120 SLDLFNCSVT-NLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcccCCcc-ccccHHHHHHHHhhhhcccc
Confidence            8999888776 333   23446688888876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.001  Score=47.66  Aligned_cols=62  Identities=13%  Similarity=0.182  Sum_probs=43.5

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc-cccccCch
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN-KLHGEIPH   93 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~   93 (155)
                      .+.+++.|++++|.++ .+|.   -..+|+.|.+.++.-....|+.+  ..+|+.|.+++| .+. .+|.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc
Confidence            3688999999999888 5552   23479999998865444556544  358999999988 443 3443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.28  E-value=0.00028  Score=47.62  Aligned_cols=43  Identities=35%  Similarity=0.452  Sum_probs=25.3

Q ss_pred             cccCCCCCcEEEcccCcCCCCcch----hhhCCCcccEEEeeccccc
Q 036127           46 ALSKCKQLQQLNLQFNNLSGAIPK----EIGNLTMLKGIYLEYNKLH   88 (155)
Q Consensus        46 ~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~   88 (155)
                      ++..|++++.+++++|.+....|.    .++..+.+.+|.+.+|.+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            344567777777777766544443    2334455667767666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.00069  Score=46.37  Aligned_cols=84  Identities=24%  Similarity=0.235  Sum_probs=43.2

Q ss_pred             CCCCcEEEcccCcCCC--CcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccc-cCCccccCCCCCc
Q 036127           50 CKQLQQLNLQFNNLSG--AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVG-VFPAAIFNMSTLK  126 (155)
Q Consensus        50 ~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~  126 (155)
                      +..++.+|+.+|.++.  ....-..++|++++|+++.|.+...+........+|+.+.+++..+.- .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3566677777776652  112234456777777777776653332222234566777776664321 1122333444444


Q ss_pred             EEEccCC
Q 036127          127 VLMLINN  133 (155)
Q Consensus       127 ~l~l~~n  133 (155)
                      .+.++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            4444444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.47  E-value=0.0014  Score=26.54  Aligned_cols=17  Identities=47%  Similarity=0.638  Sum_probs=10.4

Q ss_pred             CcEEEccCCcccCCCCcc
Q 036127          125 LKVLMLINNSLSGSLPSR  142 (155)
Q Consensus       125 L~~l~l~~n~~~~~~~~~  142 (155)
                      |+++++++|.++ .+|..
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            556666666666 55554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.06  E-value=0.0046  Score=23.26  Aligned_cols=13  Identities=38%  Similarity=0.751  Sum_probs=5.6

Q ss_pred             CccEEEccCCccc
Q 036127            3 SISDIRLTNNRLS   15 (155)
Q Consensus         3 ~l~~l~l~~~~~~   15 (155)
                      +|+.|++++|.++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.99  E-value=0.007  Score=25.39  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=12.8

Q ss_pred             CCccEEEccCCcccccCCchhh
Q 036127            2 SSISDIRLTNNRLSGELPKNIG   23 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~   23 (155)
                      ++|+.|++++|.++ .+|..++
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5665554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.99  E-value=0.007  Score=25.39  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=12.8

Q ss_pred             CCccEEEccCCcccccCCchhh
Q 036127            2 SSISDIRLTNNRLSGELPKNIG   23 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~   23 (155)
                      ++|+.|++++|.++ .+|..++
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5665554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.87  E-value=0.0081  Score=38.85  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=51.9

Q ss_pred             CCCcEEEcccCcCCCCcchhhhCCCcccEEEeeccccccc-Cchhhh-CCCCCceEEeeCcc-ccccCCccccCCCCCcE
Q 036127           51 KQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGE-IPHEIA-NLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKV  127 (155)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~  127 (155)
                      ..++.+|.++..+.++.-..+..++.++.+.+.++.--+. --+-++ -.++|+.|++.+|. |++.-...+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3467777777777666666677777777777776642111 011111 23678888888774 66544445566777777


Q ss_pred             EEccCCcc
Q 036127          128 LMLINNSL  135 (155)
Q Consensus       128 l~l~~n~~  135 (155)
                      +.+.+-..
T Consensus       181 L~l~~l~~  188 (221)
T KOG3864|consen  181 LHLYDLPY  188 (221)
T ss_pred             HHhcCchh
Confidence            77765443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.58  E-value=0.009  Score=38.66  Aligned_cols=83  Identities=14%  Similarity=0.007  Sum_probs=57.6

Q ss_pred             CccEEEccCccccccCCccccCCCCCcEEEcccCcCC-CCcchhhh-CCCcccEEEeeccc-ccccCchhhhCCCCCceE
Q 036127           28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS-GAIPKEIG-NLTMLKGIYLEYNK-LHGEIPHEIANLLNLEDL  104 (155)
Q Consensus        28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l  104 (155)
                      .++.++-+++.|.......+..++.++.+.+.++.-- ...-+.++ ..++|+.|++++|. ++......+..+++|+.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4677888888887666666778888888888877532 11222222 35789999999774 555555667778888888


Q ss_pred             EeeCcc
Q 036127          105 VLGMNI  110 (155)
Q Consensus       105 ~l~~~~  110 (155)
                      .+.+-.
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            776543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.11  E-value=0.026  Score=41.22  Aligned_cols=111  Identities=22%  Similarity=0.087  Sum_probs=65.4

Q ss_pred             CCCCccEEEccCcccccc--CCccccCCCCCcEEEcccC-cCCCCc----chhhhCCCcccEEEeeccc-ccccCchhhh
Q 036127           25 YLPYLKALFLDKNMFHGK--IPSALSKCKQLQQLNLQFN-NLSGAI----PKEIGNLTMLKGIYLEYNK-LHGEIPHEIA   96 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~--~~~~~~~~~~L~~l~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~   96 (155)
                      ..+.++.+.+..+..-..  .......++.|+.++++++ ......    ......+..++.++++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356677777766542212  2233456778888888763 111111    1233345778888888776 5444334443


Q ss_pred             -CCCCCceEEeeCcc-cccc-CCccccCCCCCcEEEccCCcc
Q 036127           97 -NLLNLEDLVLGMNI-LVGV-FPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        97 -~~~~L~~l~l~~~~-~~~~-~~~~~~~~~~L~~l~l~~n~~  135 (155)
                       .+++|+.+.+.++. +++. +......+++|+.++++++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             37788888877776 4542 223345677888888887754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.50  E-value=0.0019  Score=42.77  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=47.1

Q ss_pred             CCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEE
Q 036127           26 LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLV  105 (155)
Q Consensus        26 l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  105 (155)
                      +...+.||++.|+.. -....|+-++.+..++++.|.+. ..|.+++....+..++...|... ..|.+.+..+.++.++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            445556666666654 33444555555566666666555 44555555555555555555444 4566666666666666


Q ss_pred             eeCcccc
Q 036127          106 LGMNILV  112 (155)
Q Consensus       106 l~~~~~~  112 (155)
                      +.++.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            6666543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.47  E-value=0.035  Score=22.67  Aligned_cols=14  Identities=21%  Similarity=0.612  Sum_probs=7.0

Q ss_pred             CCccEEEccCCccc
Q 036127            2 SSISDIRLTNNRLS   15 (155)
Q Consensus         2 ~~l~~l~l~~~~~~   15 (155)
                      ++|+.|++++|.++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45666666666555

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.27  E-value=0.056  Score=39.52  Aligned_cols=130  Identities=18%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             CCccEEEccCCcccccCC-chhhcCCCCccEEEccCc-cccccCC----ccccCCCCCcEEEcccCc-CCCCcchhhhC-
Q 036127            2 SSISDIRLTNNRLSGELP-KNIGSYLPYLKALFLDKN-MFHGKIP----SALSKCKQLQQLNLQFNN-LSGAIPKEIGN-   73 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~l~~n-~~~~~~~----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~-   73 (155)
                      ++++.+.+..+.-..... ..+....+.|+.++++++ ......+    .....+..++.+++..+. ++...-..+.. 
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            345555555542221211 123346788999998873 1111111    223446788889988887 55443333333 


Q ss_pred             CCcccEEEeeccc-ccccCch-hhhCCCCCceEEeeCcccc-c-cCCccccCCCCCcEEEcc
Q 036127           74 LTMLKGIYLEYNK-LHGEIPH-EIANLLNLEDLVLGMNILV-G-VFPAAIFNMSTLKVLMLI  131 (155)
Q Consensus        74 ~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~l~l~~~~~~-~-~~~~~~~~~~~L~~l~l~  131 (155)
                      ++.|+.|.+.++. +++..-. ....++.|+++++.++... . ........+++++.+.+.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            7788888876665 4432222 2345778999999887542 1 122223446666665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.04  E-value=0.0012  Score=43.72  Aligned_cols=85  Identities=18%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEE
Q 036127           49 KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL  128 (155)
Q Consensus        49 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  128 (155)
                      .....+.||++.|+.. .....|+.++.+..++++.|.+. ..|...++...++.+....|.... .|..++..+.++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchh
Confidence            3445667777777765 34445666677777788877776 677777777777777776676666 56677777888888


Q ss_pred             EccCCccc
Q 036127          129 MLINNSLS  136 (155)
Q Consensus       129 ~l~~n~~~  136 (155)
                      ++-+|.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            77777765

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.09  E-value=0.3  Score=20.53  Aligned_cols=18  Identities=50%  Similarity=0.672  Sum_probs=14.3

Q ss_pred             CCCcEEEccCCcccCCCCc
Q 036127          123 STLKVLMLINNSLSGSLPS  141 (155)
Q Consensus       123 ~~L~~l~l~~n~~~~~~~~  141 (155)
                      ++|+.|++++|.++ .+|.
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35788888888888 8876

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.92  E-value=0.13  Score=37.12  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=15.3

Q ss_pred             CCceEEeeCcccc-ccCCccccCCCCCcEEEccCC
Q 036127          100 NLEDLVLGMNILV-GVFPAAIFNMSTLKVLMLINN  133 (155)
Q Consensus       100 ~L~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n  133 (155)
                      .+..+.+.+++.. ......+..+++|+.+++.++
T Consensus       402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            4444555554432 212233344555555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.47  E-value=0.13  Score=37.15  Aligned_cols=131  Identities=19%  Similarity=0.062  Sum_probs=76.7

Q ss_pred             cCCCCccEEEccCcc-ccccCCcc-ccCCCCCcEEEcccCc-CCCCc-chhhhCCCcccEEEeecccccc--cCchhhhC
Q 036127           24 SYLPYLKALFLDKNM-FHGKIPSA-LSKCKQLQQLNLQFNN-LSGAI-PKEIGNLTMLKGIYLEYNKLHG--EIPHEIAN   97 (155)
Q Consensus        24 ~~l~~l~~l~l~~n~-~~~~~~~~-~~~~~~L~~l~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~   97 (155)
                      ..+.+++.++.+++. ++...-.+ ...+.+|+.+.+..++ ++... ...-+++++|+.+++..+....  .+...-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            356778888887754 22222222 2356889999988876 33222 2233457788888887765431  12223346


Q ss_pred             CCCCceEEeeCcc-ccccC----CccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           98 LLNLEDLVLGMNI-LVGVF----PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        98 ~~~L~~l~l~~~~-~~~~~----~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      ++.|+.+.++.+. +++.-    ...-+....+..+.+++++....-.-.....+++|+.++
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~  432 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE  432 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence            7889999888775 33321    122345677888888888765222222225667776655

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.32  E-value=0.53  Score=19.79  Aligned_cols=13  Identities=31%  Similarity=0.342  Sum_probs=6.2

Q ss_pred             CccEEEccCcccc
Q 036127           28 YLKALFLDKNMFH   40 (155)
Q Consensus        28 ~l~~l~l~~n~~~   40 (155)
                      +|+.|+++.|.|+
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            4444555555443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=85.38  E-value=0.61  Score=35.01  Aligned_cols=61  Identities=34%  Similarity=0.360  Sum_probs=27.8

Q ss_pred             CccEEEccCCcccccCC--chhhcCCCCccEEEccCccccccCCccccCC--CCCcEEEcccCcCC
Q 036127            3 SISDIRLTNNRLSGELP--KNIGSYLPYLKALFLDKNMFHGKIPSALSKC--KQLQQLNLQFNNLS   64 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~--~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~--~~L~~l~l~~~~~~   64 (155)
                      .+..+++++|.+. .+.  +.+.+..|++..|+|++|........++...  ..|+.|.+.+|++.
T Consensus       219 ~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  219 EILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC  283 (585)
T ss_pred             ceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence            3455566666555 332  1122345666666666662211111112221  23556666666554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.89  E-value=1.5  Score=18.58  Aligned_cols=14  Identities=43%  Similarity=0.525  Sum_probs=11.3

Q ss_pred             CCCcEEEccCCccc
Q 036127          123 STLKVLMLINNSLS  136 (155)
Q Consensus       123 ~~L~~l~l~~n~~~  136 (155)
                      ++|++|++++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46788889888886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-16
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-07

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 2   SSISDIRLTNNRLSGEL-------PKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXX 54
           +S+  + L++N  SG +       PKN       L+ L+L  N F GKIP  LS C    
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNT------LQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 55  XXXXXXXXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV 114
                    SG IP  +G+L+ L+ + L  N L GEIP E+  +  LE L+L  N L G 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
            P+ + N + L  + L NN L+G +P  I
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 2   SSISDIRLTNNRLSGEL-------PKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXX 54
           +S+  + L++N  SG +       PKN       L+ L+L  N F GKIP  LS C    
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNT------LQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 55  XXXXXXXXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV 114
                    SG IP  +G+L+ L+ + L  N L GEIP E+  +  LE L+L  N L G 
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
            P+ + N + L  + L NN L+G +P  I
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWI 507

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 26  LPYLKALFLDK-NMFHGKIPSALSKCKXXXXXXXXXXXXSGAIPKEIGNLTMLKGIYLEY 84
           LPYL  L++   N   G IP A++K              SGAIP  +  +  L  +   Y
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134
Query: 85  NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN-NSLSGSLP 140
           N L G +P  I++L NL  +    N + G  P +  + S L   M I+ N L+G +P
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  134 bits (340), Expect = 2e-37
 Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 1/143 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
            +++ ++ L NN  +G++P  + +    L +L L  N   G IPS+L    +L+ L L  
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L G IP+E+  +  L+ + L++N L GEIP  ++N  NL  + L  N L G  P  I 
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 121 NMSTLKVLMLINNSLSGSLPSRI 143
            +  L +L L NNS SG++P+ +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (338), Expect = 3e-37
 Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 2   SSISDIRLTNNRLSGELPKNIG-SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +S+  + L++N  SG +  N+  +    L+ L+L  N F GKIP  LS C +L  L+L F
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N LSG IP  +G+L+ L+ + L  N L GEIP E+  +  LE L+L  N L G  P+ + 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           N + L  + L NN L+G +P  I   L  + +L 
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIG-RLENLAILK 520

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (331), Expect = 3e-36
 Identities = 56/143 (39%), Positives = 77/143 (53%), Gaps = 1/143 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
            S +  + L+ N LSG +P ++GS L  L+ L L  NM  G+IP  L   K L+ L L F
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N+L+G IP  + N T L  I L  N+L GEIP  I  L NL  L L  N   G  PA + 
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 121 NMSTLKVLMLINNSLSGSLPSRI 143
           +  +L  L L  N  +G++P+ +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (312), Expect = 1e-33
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           + S+  + L  N+ +GE+P  +      L  L L  N F+G +P     C  L+ L L  
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 61  NNLSGAIPKE-IGNLTMLKGIYLEYNKLHGEIPHEIANLL-NLEDLVLGMNILVGVFPAA 118
           NN SG +P + +  +  LK + L +N+  GE+P  + NL  +L  L L  N   G     
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 119 IFN--MSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           +     +TL+ L L NN  +G +P  +  +   +  L 
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLH 424

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (303), Expect = 2e-32
 Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 5/143 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +S + D++L  N L GE+P+ +   +  L+ L LD N   G+IPS LS C  L  ++L  
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L+G IPK IG L  L  + L  N   G IP E+ +  +L  L L  N+  G  PAA+F
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 121 NMSTLKVLMLINNSLSGSLPSRI 143
             S      +  N ++G     I
Sbjct: 560 KQS----GKIAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 2e-30
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSAL---SKCKQLQQLN 57
            S +  + +++N L      + G  L  L+ L L  N   G           C +L+ L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 58  LQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
           +  N +SG +   +     L+ + +  N     IP  + +   L+ L +  N L G F  
Sbjct: 185 ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR 241

Query: 118 AIFNMSTLKVLMLINNSLSGSLPS 141
           AI   + LK+L + +N   G +P 
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPP 265

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (281), Expect = 1e-29
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
              +  + ++ N++SG++   +      L+ L +  N F   IP  L  C  LQ L++  
Sbjct: 177 CGELKHLAISGNKISGDVD--VSR-CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N LSG   + I   T LK + +  N+  G IP     L +L+ L L  N   G  P  + 
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 290

Query: 121 -NMSTLKVLMLINNSLSGSLPSRI 143
               TL  L L  N   G++P   
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFF 314

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (272), Expect = 2e-28
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 1/141 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           M              G   + +   L       +   ++ G           +  L++ +
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N LSG IPKEIG++  L  + L +N + G IP E+ +L  L  L L  N L G  P A+ 
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 121 NMSTLKVLMLINNSLSGSLPS 141
            ++ L  + L NN+LSG +P 
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (251), Expect = 1e-25
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 11/160 (6%)

Query: 1   MSSISDIRLTNNRLSGELP--KNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLN 57
            +S++ + L+ N LSG +    ++GS    LK L +  N        S   K   L+ L+
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

Query: 58  LQFNNLSGAIPKEI---GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV 114
           L  N++SGA             LK + +  NK+ G++   ++  +NLE L +  N     
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            P  + + S L+ L +  N LSG     I  +   +++L+
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLN 253

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 8/156 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             S+  + L  N  +G +P  +       ++  +  N   GK    +      ++ +   
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 61  N--NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAA 118
           N     G   +++  L+      +      G       N  ++  L +  N+L G  P  
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

Query: 119 IFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           I +M  L +L L +N +SGS+P  +   L  + +LD
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILD 686

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.4 bits (233), Expect = 4e-23
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 10/147 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSA--LSKCKQLQQLNL 58
           ++ +  + L+N+ ++G +          L +L L +N   G + +   L  C  L+ LN+
Sbjct: 76  LTGLESLFLSNSHINGSVS-GFKC-SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133

Query: 59  QFNNLSGAIPKEIG-NLTMLKGIYLEYNKLHGEIPHEIA---NLLNLEDLVLGMNILVGV 114
             N L        G  L  L+ + L  N + G              L+ L +  N + G 
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPS 141
               +     L+ L + +N+ S  +P 
Sbjct: 194 VD--VSRCVNLEFLDVSSNNFSTGIPF 218

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 7/145 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           + +++ ++L+NN  SG +P  +G     L  L L+ N+F+G IP+A+ K        +  
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAA 567

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYN--KLHGEIPHEIANLLNLEDLVLGMNILVGVFPAA 118
           N ++G     I N  M K  +   N  +  G    ++  L       +   +  G     
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 119 IFNMSTLKVLMLINNSLSGSLPSRI 143
             N  ++  L +  N LSG +P  I
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEI 652

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 11/148 (7%)

Query: 2   SSISDIRLTNNRLS---GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNL 58
             ++ I L++  L+     +  ++ S L  L++LFL  +  +G +         L  L+L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLS-LTGLESLFLSNSHINGSVSG-FKCSASLTSLDL 107

Query: 59  QFNNLSGAIP--KEIGNLTMLKGIYLEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVF 115
             N+LSG +     +G+ + LK + +  N L           L +LE L L  N + G  
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 116 PAAIF---NMSTLKVLMLINNSLSGSLP 140
                       LK L +  N +SG + 
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 5e-19
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 37  NMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIP--HE 94
           N+    + S+L     L+ L L  ++++G++         L  + L  N L G +     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 95  IANLLNLEDLVLGMNILVGVFPA-AIFNMSTLKVLMLINNSLSGSLPSRIDL--SLPTVE 151
           + +   L+ L +  N L           +++L+VL L  NS+SG+      L      ++
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 152 VLD 154
            L 
Sbjct: 182 HLA 184

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 53  LQQLNLQFNNLS---GAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMN 109
           +  ++L    L+    A+   + +LT L+ ++L  + ++G +        +L  L L  N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 110 ILVGVFPAA--IFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            L G       + + S LK L + +N+L         L L ++EVLD
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 72  GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLI 131
             +T +       N     +   + +L  LE L L  + + G         ++L  L L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 132 NNSLSGSLPSRIDLS-LPTVEVLD 154
            NSLSG + +   L     ++ L+
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLN 132

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (318), Expect = 3e-36
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 1   MSSISDIRLTNNRLSGE--LPKNIGSYLPYLKALFL-DKNMFHGKIPSALSKCKQLQQLN 57
              ++++ L+   L     +P ++ + LPYL  L++   N   G IP A++K  QL  L 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 58  LQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
           +   N+SGAIP  +  +  L  +   YN L G +P  I++L NL  +    N + G  P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 118 AIFNMSTL-KVLMLINNSLSGSLPSRI 143
           +  + S L   + +  N L+G +P   
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  124 bits (313), Expect = 2e-35
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 4/145 (2%)

Query: 11  NNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE 70
            N L G +P  I   L  L  L++      G IP  LS+ K L  L+  +N LSG +P  
Sbjct: 86  INNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 71  IGNLTMLKGIYLEYNKLHGEIPHEIANLLNL-EDLVLGMNILVGVFPAAIFNMSTLKVLM 129
           I +L  L GI  + N++ G IP    +   L   + +  N L G  P    N++ L  + 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203

Query: 130 LINNSLSGSLPSRIDLSLPTVEVLD 154
           L  N L G        S    + + 
Sbjct: 204 LSRNMLEGDASVLFG-SDKNTQKIH 227

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  100 bits (252), Expect = 1e-26
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 6/142 (4%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
              + + ++ NRL+G++P    +    L  + L +NM  G         K  Q+++L  N
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
           +L+  +  ++G    L G+ L  N+++G +P  +  L  L  L +  N L G  P    N
Sbjct: 232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 122 MSTLKVLMLINNSL--SGSLPS 141
           +    V    NN       LP+
Sbjct: 290 LQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 94.1 bits (235), Expect = 4e-24
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 37  NMFHGKIPSALSKCKQLQQLNLQFNNLSG--AIPKEIGNLTMLKGIYL-EYNKLHGEIPH 93
             + G +    ++  ++  L+L   NL     IP  + NL  L  +Y+   N L G IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 94  EIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
            IA L  L  L +    + G  P  +  + TL  L    N+LSG+LP  I
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.6 bits (174), Expect = 2e-15
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             +   I L  N L+ +L K +G     L  L L  N  +G +P  L++ K L  LN+ F
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK-VGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIP 92
           NNL G IP+  GNL          NK     P
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 42  KIPSALSKCKQLQ----QLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGE--IPHEI 95
           +I   L     L       +       G +         +  + L    L     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 96  ANLLNLEDLVL-GMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
           ANL  L  L + G+N LVG  P AI  ++ L  L + + ++SG++P  +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 1/155 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  +   ++ L      ++   L  L  L +             +    L+ L +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
           N+       +I   L  L  + L   +L    P    +L +L+ L +  N    +     
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             +++L+VL    N +  S    +     ++  L+
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 8e-21
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
                   ++P N+       K L L  N        +     +LQ L+L    +     
Sbjct: 14  CMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
               +L+ L  + L  N +        + L +L+ LV     L  +    I ++ TLK L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 129 MLINNSLSGSLPSRIDLSLPTVEVLD 154
            + +N +          +L  +E LD
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLD 155

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 4e-20
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 3/144 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKI-PSALSKCKQLQQLNLQ 59
           + ++  + +++              L  L+ L +  N F     P   ++ + L  L+L 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 60  FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
              L    P    +L+ L+ + + +N            L +L+ L   +N ++      +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 120 FNM-STLKVLMLINNSLSGSLPSR 142
            +  S+L  L L  N  + +   +
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 2e-19
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +S +S + LT N +           L  L+ L   +          +   K L++LN+  
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 61  NNL-SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLE----DLVLGMNILVGVF 115
           N + S  +P+   NLT L+ + L  NK+      ++  L  +      L L +N +  + 
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 116 PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           P A   +  L  L L NN  S ++       L  +EV  
Sbjct: 194 PGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
              +  + L+   +         S L +L  L L  N        A S    LQ+L    
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
            NL+      IG+L  LK + + +N +   ++P   +NL NLE L L  N +  ++   +
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 120 FNMSTLKV----LMLINNSLSGSLPS 141
             +  + +    L L  N ++   P 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPG 195

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 1   MSSISDIRLTNNRLS--GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNL 58
           + S+  + L+ N LS  G   ++       LK L L  N     + S     +QL+ L+ 
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 59  QFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
           Q +NL       +  +L  L  + + +             L +LE L +  N     F  
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 118 AIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            IF  +  L  L L    L    P+  + SL +++VL+
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLN 500

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 3/144 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  +++  N        +I + L  L  L L +       P+A +    LQ LN+  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLL-NLEDLVLGMNILVGVFPAAI 119
           NN           L  L+ +    N +      E+ +   +L  L L  N          
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563

Query: 120 F--NMSTLKVLMLINNSLSGSLPS 141
           F   +   + L++    +  + PS
Sbjct: 564 FLQWIKDQRQLLVEVERMECATPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 11/157 (7%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
                 + L N +        + S         L      G    +      L+ L+L  
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLK------RLTFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 61  NNLS--GAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAA 118
           N LS  G   +     T LK + L +N +   +      L  LE L    + L  +   +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 119 IF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           +F ++  L  L + +     +     +  L ++EVL 
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLK 451

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 8/144 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG-KIPSALSKCKQLQQLNLQ 59
           +SS+  +      L+      IG  L  LK L +  N+    K+P   S    L+ L+L 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 60  FNNLSGAIPKEIGNLTMLK----GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVF 115
            N +      ++  L  +      + L  N ++  I       + L  L L  N      
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 116 PAAIF-NMSTLKVLMLINNSLSGS 138
                  ++ L+V  L+       
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNE 240

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 27/178 (15%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKN------MFHGKIPSALSKCKQLQQ 55
             +  + L   R  G L K   S L  L  L +++        +   I    +    +  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 56  LNLQFNNLSGAIP-----------------KEIGNLTMLKGIYLEYNKLHGEIPHEIANL 98
            +L    +                       +   L +     L +    G       +L
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346

Query: 99  LNLEDLVLGMNIL--VGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            +LE L L  N L   G    + F  ++LK L L  N +     +   L L  +E LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHLD 402

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 25/159 (15%), Positives = 42/159 (26%), Gaps = 15/159 (9%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSG 65
           + L+ N ++   P         L  L L  N     +    +     L+   L       
Sbjct: 182 LDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 66  AIPKE---IGNLTMLKGIYLEYNKL------HGEIPHEIANLLNLEDLVLGMNILVGVFP 116
               E      L  L  + +E  +L        +I      L N+    L    +  V  
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 117 AAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155
                    + L L+N       P+    SL  +     
Sbjct: 300 --FSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSN 335

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.1 bits (232), Expect = 5e-23
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 2/154 (1%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           ++I+ + LT+N+L      N       L +L +  N      P    K   L+ LNLQ N
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
            LS    K     T L  ++L  N +     +      NL  L L  N L          
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 122 MSTLKVLMLINNSLSGSLPSRID-LSLPTVEVLD 154
           +  L+ L+L NN +       +D  +  +++ L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 5/146 (3%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
            ++ +L+ ++P ++      +  L L  N       +  ++  QL  L++ FN +S   P
Sbjct: 11  CSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
           +    L MLK + L++N+L        A   NL +L L  N +  +          L  L
Sbjct: 67  ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 129 MLINNSLSGSLPSRIDLSLPTVEVLD 154
            L +N LS S      + L  ++ L 
Sbjct: 127 DLSHNGLS-STKLGTQVQLENLQELL 151

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 1   MSSISDIRLTNNRLSG-ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQ 59
           + S+  + L    L   +   +    L  L  L L  N         L   ++L+ L+LQ
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 60  FNNLS--------GAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNIL 111
            NNL+        G     +  L+ L  + LE N           +L  L+ + LG+N L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 112 VGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             +  +   N  +LK L L  N ++         +   +  LD
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 5e-19
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGS--YLPYLKALFLDKNMFHGKIPSALSKCK--QLQQL 56
           +  +  + L N +L   L + +        ++ L L  +       +     K   L  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 57  NLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVF- 115
           +L +NNL+         L  L+  +LEYN +     H +  L N+  L L  +       
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 116 --------PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                     +   +  L+ L + +N + G + S +   L  ++ L 
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLS 359

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 8e-19
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 11/164 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  + L  N +  EL       L  +  ++L  N +     ++ +    LQ+L L+ 
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 61  NNLSG--AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNIL------- 111
             L    + P     L  L  + L  N +       +  L  LE L L  N L       
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 112 -VGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             G     +  +S L +L L +N     +P  +   L  ++++D
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKN---IGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLN 57
           + ++  + L+N+  S     N   +      L  L L KN        A S    L+ L+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 58  LQFNNLSGAIP-KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNIL--VGV 114
           L  N +   +  +E   L  +  IYL YNK      +  A + +L+ L+L    L  V  
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            P+    +  L +L L NN+++      ++  L  +E+LD
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILD 510

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALS--KCKQLQQLNL 58
             ++  + L++N LS          L  L+ L L  N         L       L++L L
Sbjct: 120 QKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 59  QFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA---NLLNLEDLVLGMNILVGVF 115
             N +    P     +  L G++L   +L   +  ++       ++ +L L  + L    
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 116 PAAIFNM--STLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                 +  + L +L L  N+L+          LP +E   
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFF 278

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 38/191 (19%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQ- 59
            ++++ + L+ N L+  +  +  ++LP L+  FL+ N        +L     ++ LNL+ 
Sbjct: 247 WTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 60  --------FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNI- 110
                     +L          L  L+ + +E N + G   +    L+NL+ L L  +  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 111 ---------------------------LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
                                      +  +   A   +  L+VL L  N +   L  + 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 144 DLSLPTVEVLD 154
              L  +  + 
Sbjct: 426 WRGLENIFEIY 436

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 10/154 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM--------FHGKIPSALSKCKQ 52
           + +++ + L+NN ++  +  ++   L  L+ L L  N           G     L     
Sbjct: 479 LRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 53  LQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILV 112
           L  LNL+ N       +   +L  LK I L  N L+        N ++L+ L L  N++ 
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 113 GVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDL 145
            V           L  L +  N    +  S    
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKC-KQLQQLNLQ 59
           +  +  I L  N L+  LP ++ +    LK+L L KN+             + L +L+++
Sbjct: 559 LFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 60  FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEI 91
           FN            +  +   +    +L    
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 6e-19
 Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 2/155 (1%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  +   ++ L      +    L  L  L +                  L  L +  
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
           N+        +  N T L  + L   +L          L  L+ L +  N L+ +  +  
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             + +L  L    N +  +    +     ++   +
Sbjct: 518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 8e-17
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
             + +LS ++P +I       K + L  N        + S   +LQ L+L    +     
Sbjct: 18  CMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
           K    L  L  + L  N +    P   + L +LE+LV     L  +    I  + TLK L
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 129 MLINNSLSGSLPSRIDLSLPTVEVLD 154
            + +N +          +L  +  +D
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVD 159

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 2/137 (1%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQ 59
           +  +  + ++           I   L  L  L +  N F     S   +    L  L+L 
Sbjct: 423 LEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 60  FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
              L          L  L+ + + +N L          L +L  L    N +        
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 120 FNMSTLKVLMLINNSLS 136
               +L    L NNS++
Sbjct: 542 HFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYL--PYLKALFLDKNMFHGKIPSALSKCKQLQQLNL 58
           + S+S + L+ N LS        S L    L+ L L  N     + +     ++LQ L+ 
Sbjct: 349 LPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDF 406

Query: 59  QFNNLSGAIPKE-IGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
           Q + L          +L  L  + + Y     +       L +L  L +  N       +
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 118 AIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            +F N + L  L L    L   +   +  +L  +++L+
Sbjct: 467 NVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG-KIPSALSKCKQLQQLNLQ 59
           ++S+ ++     +L+  L       L  LK L +  N  H  K+P+  S    L  ++L 
Sbjct: 103 LTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 60  FNNLSGAIPKEIGNLTMLKG----IYLEYNKLHGEIPHEIANLLNLEDLVLGMN-ILVGV 114
           +N +      ++  L         + +  N +   I  +    + L +L L  N     +
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 115 FPAAIFNMSTLKVLMLINNSLSG 137
               + N++ L V  LI      
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 30/180 (16%), Positives = 53/180 (29%), Gaps = 32/180 (17%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
                 + +   +L      +    LP+LK+L L  N   G I         L  L+L  
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSR 359

Query: 61  NNLSG-------------------------AIPKEIGNLTMLKGIYLEYNKLHGEIPHE- 94
           N LS                           +      L  L+ +  +++ L        
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 95  IANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             +L  L  L +        F      +++L  L +  NS   +  S +  +   +  LD
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 16/160 (10%)

Query: 3   SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKI------PSALSKCKQLQ-- 54
            + ++ L  N  S  + K     L  L    L    F  +       PS +     +   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 55  QLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV 114
           +  L + N       +   L  +  + L    +  +   ++      + L +    L   
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                 ++  LK L L  N  S S      ++LP++  LD
Sbjct: 323 PTL---DLPFLKSLTLTMNKGSISFKK---VALPSLSYLD 356

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 13/167 (7%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFH---GKIPSALSKCKQLQQLN 57
           ++++  + L+ N +   +  N   +L     + L  +M       I     +  +L +L 
Sbjct: 152 LTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 58  LQFNNLSGAIPKEIGN-------LTMLKGIYLEYNKLHGEIPHEIANL--LNLEDLVLGM 108
           L+ N  S  I K             ++ G + +   L    P  +  L  + +++  L  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 109 NILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155
                        ++ +  + L   S+             ++ ++ C
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 1/140 (0%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           +S   +  + N L   +     S L  L  L L +   +           +L  L L  N
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
            L       +     LK ++     +       + N   LE L LG N +  +     F 
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 122 MSTLKVLMLINNSLSGSLPS 141
              LKVL   NN++      
Sbjct: 152 TEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
             N  L+ E+P  +       + L    N+      +  S+   L  L+L    +     
Sbjct: 19  CENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
               +   L  + L  N L       ++    L+ L      +  +    + N  TL+ L
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 129 MLINNSLSGSLPSRIDLSLPTVEVLD 154
            L +N +S S+          ++VLD
Sbjct: 135 YLGSNHIS-SIKLPKGFPTEKLKVLD 159

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 5/157 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
              +  + L   RL  +  ++    L  LK L L  ++              LQ LNLQ 
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 61  NNLSGAIPKEIG---NLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
           N+      ++      L  L+ + L +  L     H   +L  +  + L  N L      
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 118 AIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           A+ ++  +  L L +N +S  LPS +   L     ++
Sbjct: 519 ALSHLKGI-YLNLASNHISIILPSLLP-ILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 7e-16
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 4/157 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNI-GSYLPYLKALFLDKNMFHGKIPSALSKCK--QLQQLN 57
            +    +     +    + K +  S +  L     +        P+         ++ +N
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 58  LQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
           LQ +             + L+ + L    L  E+P  +  L  L+ LVL  N    +   
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 118 AIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           +  N  +L  L +  N+    L +    +L  +  LD
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 3/148 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           + +++ + LT  ++   + ++       L  L L  N       +ALS  K L+ L    
Sbjct: 56  LINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
             +S      + N   L+ +YL  N +      +      L+ L    N +  +    + 
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 121 NMSTLKVLMLI--NNSLSGSLPSRIDLS 146
           ++     L L    N ++G  P   D +
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSA 202

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 5/159 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFH--GKIPSALSKCKQLQQLNL 58
             S++ + +  N    EL       L  L+ L L  +           L     LQ LNL
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 59  QFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPA 117
            +N       +       L+ + L + +L  +       NL  L+ L L  ++L      
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 118 AIFNMSTLKVLMLINNSLSGSLPSRIDL--SLPTVEVLD 154
               +  L+ L L  N        + +   +L  +E+L 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 34/159 (21%), Positives = 51/159 (32%), Gaps = 8/159 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM-FHGKIPSALSKCKQLQQLNLQ 59
              +  +   NN +   L K   S L     L L+ N      I          Q LN  
Sbjct: 152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 60  FNNLSGAIPKEIGN--LTMLKGIYLEYNKLHGEIPHEIANL--LNLEDLVLGMNILVGVF 115
                  I K + N  +  L     E        P     L  +++E + L  +    + 
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 116 PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                  S L+ L L    LS  LPS + + L T++ L 
Sbjct: 271 SNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLV 307

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  + L+   LS  + ++  + L  +  + L  N        ALS  K +  LNL  
Sbjct: 475 LGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHG 89
           N++S  +P  +  L+  + I L  N L  
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDC 561

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 5e-18
 Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           + ++  +RL    +   LP +I + L  LK+L +  +     +  A+    +L++L+L+ 
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

Query: 61  NNLSGAIPKEIGNLTMLKGIYL-EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
                  P   G    LK + L + + L   +P +I  L  LE L L   + +   P+ I
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLP 148
             +    ++++  + L   L     ++ P
Sbjct: 298 AQLPANCIILVPPH-LQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +S +  + +    L  ELP  +      L+ L L +N     +P++++   +L++L+++ 
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 61  NNLSGAIPKEIGN---------LTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNIL 111
                 +P+ + +         L  L+ + LE+  +   +P  IANL NL+ L +  + L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

Query: 112 VGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
                 AI ++  L+ L L   +   + P   
Sbjct: 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 8e-11
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 42  KIPSALSKCKQ--LQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLL 99
                L    Q     L L+   L    P +   L+ L+ + ++   L  E+P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 100 NLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
            LE L L  N L    PA+I +++ L+ L +        LP  +
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 5e-18
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG-------KIPSALSKCKQL 53
             ++S I L+NN++S   PK + S    L ++ L  NM                     L
Sbjct: 432 GINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 54  QQLNLQFNNLSGAIPKEI--GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNI- 110
             ++L+FN L+  +  +     L  L GI L YN      P +  N   L+   +     
Sbjct: 491 TSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 111 -----LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                 +  +P  I    +L  L + +N +   +  +I    P + VLD
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI---TPNISVLD 593

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 8e-18
 Identities = 21/153 (13%), Positives = 41/153 (26%), Gaps = 8/153 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG----KIPSALSKCKQLQQL 56
              ++ + L     SG +P  IG  L  L+ L L  +          P  +S     +Q 
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 57  NLQFNNLSGAIPKEIGNLTM--LKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV 114
                +                L    +  +     I       L    +    N +  V
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSL 147
              A+  ++ L+   + N+            + 
Sbjct: 199 -SKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.5 bits (186), Expect = 7e-17
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 1   MSSISDIRLTNNRL-SGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQ 59
              I  I +  N L +  +  ++   +  L  L    N   GK+P+      +L  LNL 
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLA 361

Query: 60  FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIP--HEIANLLNLEDLVLGMNILVGV--- 114
           +N ++       G    ++ +   +NKL   IP   +  ++  +  +    N +  V   
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 115 ----FPAAIFNMSTLKVLMLINNSLSGSLPS 141
                    F    +  + L NN +S     
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 9e-16
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 1   MSSISDIRLTNNRLSGELPKNIG-SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQ 59
              ++ I L  N+L+  L  +   + LPYL  + L  N F    P+       L+   ++
Sbjct: 487 TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 60  ------FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVG 113
                  N      P+ I     L  + +  N +  ++  +I    N+  L +  N  + 
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNIS 601

Query: 114 VFPAAIFNMSTLKVLMLINNSLS 136
           +  + +       + ML  +   
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 16/171 (9%), Positives = 51/171 (29%), Gaps = 30/171 (17%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
            S +    + ++     + K+    L     +    N     +  A+ +  +L+Q  +  
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN 215

Query: 61  NNLSG-------------------AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNL 101
           +                           +  NL  L  + +       ++P  +  L  +
Sbjct: 216 SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 102 EDLVLGMNILVGV--------FPAAIFNMSTLKVLMLINNSL-SGSLPSRI 143
           + + +  N  +            A       ++++ +  N+L +  + + +
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 19/170 (11%)

Query: 1   MSSISDIRLTNNRLSGELPKNIG-SYLPYLKALFLDKNMFHG-------KIPSALSKCKQ 52
              + ++   +N+L   +P       +  + A+    N            +     K   
Sbjct: 376 TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 53  LQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHG-------EIPHEIANLLNLEDLV 105
           +  +NL  N +S    +     + L  I L  N L         +      N   L  + 
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 106 LGMNILVGVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           L  N L  +        +  L  + L  NS S   P++  L+  T++   
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP-LNSSTLKGFG 542

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPY-------LKALFLDKNMFHGKIPS-ALSKCKQ 52
            S +S I L  N L+  +PKN              L ++ L  N           +    
Sbjct: 456 GSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 53  LQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE------YNKLHGEIPHEIANLLNLEDLVL 106
           L  ++L +N+ S   P +  N + LKG  +        N+   E P  I    +L  L +
Sbjct: 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 107 GMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS 141
           G N +  V    I     + VL + +N       S
Sbjct: 574 GSNDIRKV-NEKIT--PNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 35  DKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHG----E 90
           + +M+  +   +L+   ++  L+L+    SG +P  IG LT L+ + L  +         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 91  IPHEIANLLNLEDLVLGMNILVGVFPAAIF--NMSTLKVLMLINNSLSGSLPSRIDLSL 147
            P  I+  ++ E            F       + S L    + ++    S+     ++L
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 57  NLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVG--- 113
           N + +         + +   + G+ LE     G +P  I  L  LE L LG +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 114 -VFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
              P  I    + +    +      +     
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYD 153

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 2e-17
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG---------KIPSALSKCK 51
           +  ++D+ L N     +LP  +   LP L++L +  N             ++        
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 52  QLQQLNLQFNNLSGAIPKE--IGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMN 109
           ++Q   + +NNL    P    +  +  L  +   +NK+           + L DL L  N
Sbjct: 549 KIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYN 605

Query: 110 ILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDL-SLPTVEVLD 154
            +  +          ++ L   +N L   +P+  +  S+  +  +D
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 8e-17
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 16/159 (10%)

Query: 6   DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG 65
            I    NR++  + K I   L  L+ ++   + F     +        +  N  +     
Sbjct: 429 QIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYE 481

Query: 66  AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV---------FP 116
                  NL  L  + L       ++P  + +L  L+ L +  N  +             
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 117 AAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155
                   +++  +  N+L     S     +  + +LDC
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 3e-13
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 20/169 (11%)

Query: 1   MSSISDIRLTNNRLSGELPKNIG-------SYLPYLKALFLDKNMFHGKIPS-ALSKCKQ 52
            S IS I L+NN ++  +P+N              L  + L  N           +    
Sbjct: 696 GSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 53  LQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY------NKLHGEIPHEIANLLNLEDLVL 106
           L  +++ +N  S   P +  N + LK   + +      N++  + P  I    +L  L +
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 107 GMNILVGVFPAAIFNMSTLKVLMLINNSL-SGSLPSRIDLSLPTVEVLD 154
           G N +  V          L +L + +N   S  + S        + VL 
Sbjct: 814 GSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 3e-13
 Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 17/169 (10%)

Query: 1   MSSISDIRLTNNRLSGELPKNIG-SYLPYLKALFLDKNMFHGKIPSALS-----KCKQLQ 54
              +  +  ++N+L   +P       +  + ++    N    +  +        K     
Sbjct: 618 TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 55  QLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKL-------HGEIPHEIANLLNLEDLVLG 107
            + L +N +     +     + +  I L  N +                N   L  + L 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 108 MNILVGVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155
            N L  +        +  L  + +  N  S S P++  L+   ++    
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQP-LNSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 6/152 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
              ++ + L      G +P  IG  L  LK L    +           +         + 
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 61  NNLSGAIPKEIG----NLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL-VLGMNILVGVF 115
           + +     K        L +   +    N+     P +  + ++L+D  +  +   +   
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 116 PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSL 147
             AI  ++ L+++   N+  +    +      
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 6/126 (4%)

Query: 35  DKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHE 94
           + +M+  +    L    ++  L+L      G +P  IG LT LK +    +         
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 95  IANLLNLEDLVLGMN-ILVGVFPAAIFNMSTLKVLMLINNSLS-----GSLPSRIDLSLP 148
               L  +      + I +      +     L +  L+ ++++       +     +SL 
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 149 TVEVLD 154
             ++ +
Sbjct: 427 DTQIGN 432

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 13/99 (13%), Positives = 27/99 (27%)

Query: 56  LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVF 115
            N + +        ++ N   + G+ L      G +P  I  L  L+ L  G +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 116 PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                   T  +     + +              + + D
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
              NR+  + P  I +  P L  L +  N    K+   L    QL  L++  N       
Sbjct: 789 AEGNRILRQWPTGITT-CPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDV 844

Query: 69  KEIGNLTMLKGIYLEYNKLH 88
             +          L Y+K  
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQ 864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 4/155 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++S+  + L    L+  +P    S+L  L  L L     +     +  +  +L+ L +  
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHE-IANLLNLEDLVLGMNILVGVFPAAI 119
                 +         L  + + +  L   +P+  + +L+ L  L L  N +  +  + +
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             +  L+ + L+   L+  +       L  + VL+
Sbjct: 269 HELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.4 bits (170), Expect = 9e-15
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 4/154 (2%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           +    + L  NR+   L ++  +  P+L+ L L++N+     P A +    L+ L L+ N
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 62  NLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
            L   IP  +   L+ L  + +  NK+   + +   +L NL+ L +G N LV +   A  
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            +++L+ L L   +L+ S+P+     L  + VL 
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR 182

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 2/154 (1%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           + ++  + + +N L   +     S L  L+ L L+K         ALS    L  L L+ 
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
            N++         L  LK + + +      +       LNL  L +    L  V   A+ 
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           ++  L+ L L  N +S ++   +   L  ++ + 
Sbjct: 246 HLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQ 278

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 9e-13
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  +RL +  ++  +       L  LK L +    +   +         L  L++  
Sbjct: 175 LHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 61  NNLSGAIPKE-IGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
            NL+ A+P   + +L  L+ + L YN +   I   +   LL L+++ L    L  V P A
Sbjct: 234 CNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 119 IFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
              ++ L+VL +  N L+ +L   +  S+  +E L 
Sbjct: 292 FRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 3   SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62
           +++ + +T+  L+  +P     +L YL+ L L  N       S L +  +LQ++ L    
Sbjct: 225 NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 63  LSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMN 109
           L+  +       L  L+ + +  N+L   +   +  ++ NLE L+L  N
Sbjct: 284 LA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 5/138 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  + +++      +  N   Y   L +L +           A+     L+ LNL +
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
           N +S  I   +   L  L+ I L   +L   +       L  L  L +  N L  +  + 
Sbjct: 258 NPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 119 IFNMSTLKVLMLINNSLS 136
             ++  L+ L+L +N L+
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 52  QLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNI 110
           Q + +         A+P+ I     +L    L  N++      E A+  +LE+L L  NI
Sbjct: 12  QDRAVLCHRKRFV-AVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 111 LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           +  V P A  N+  L+ L L +N L   +P  +   L  +  LD
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 5/148 (3%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGA 66
            L NN +   +P    + +P L  L L +      I   A      L+ LNL   N+   
Sbjct: 153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
           +P  +  L  L+ + +  N      P     L +L+ L +  + +  +   A   +++L 
Sbjct: 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 127 VLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            L L +N+LS SLP  +   L  +  L 
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 11  NNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE 70
             +L   + +     L  LK L L        +P  L+    L++L +  N+     P  
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGS 237

Query: 71  IGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLML 130
              L+ LK +++  +++     +    L +L +L L  N L  +       +  L  L L
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 131 INNSL 135
            +N  
Sbjct: 298 HHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 6/154 (3%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           +  S +  T   LS E+P+ I       + L L +N               L+ L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIF 120
           ++          L  L  + L  N L   IP      L  L +L L  N +  +   A  
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            + +L  L L        +       L  ++ L+
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 6e-14
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQ 59
           +S + ++ L NN +   +P    + +P L+ L L +      I   A      L+ LNL 
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 60  FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
             NL   IP  +  L  L  + L  N L    P     L++L+ L +  + +  +   A 
Sbjct: 194 MCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            N+ +L  + L +N+L+  LP  +   L  +E + 
Sbjct: 252 DNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 6/154 (3%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           +  S +      L  E+P  I       + L L +N       ++    + L+ L L  N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIF 120
           ++          L  L  + L  N+L   IP+     L  L++L L  N +  +   A  
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            + +L+ L L        +       L  +  L+
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 11  NNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE 70
             RLS  + +     L  L+ L L       +IP  L+   +L +L+L  N+LS   P  
Sbjct: 170 LKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGS 226

Query: 71  IGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLML 130
              L  L+ +++  +++     +   NL +L ++ L  N L  +       +  L+ + L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 131 INNSL 135
            +N  
Sbjct: 287 HHNPW 291

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGA 66
            L +N L+  +     + L  L+ L L  N     +         +L  L+L    L   
Sbjct: 62  WLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-E 119

Query: 67  IPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMST 124
           +   +   L  L+ +YL+ N L   +P +   +L NL  L L  N +  V   A   + +
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 125 LKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           L  L+L  N ++  +       L  +  L 
Sbjct: 179 LDRLLLHQNRVA-HVHPHAFRDLGRLMTLY 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 5/156 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++ +  + L++N     +       L  L  L LD+       P        LQ L LQ 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
           N L  A+P +   +L  L  ++L  N++   +P      L +L+ L+L  N +  V P A
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 119 IFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             ++  L  L L  N+LS +LP+     L  ++ L 
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 3/136 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQ 59
           +  +  + L    L  EL   +   L  L+ L+L  N     +P         L  L L 
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 60  FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
            N +S    +    L  L  + L  N++    PH   +L  L  L L  N L  +   A+
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 120 FNMSTLKVLMLINNSL 135
             +  L+ L L +N  
Sbjct: 222 APLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 10  TNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPK 69
               L   +P  I       + +FL  N       ++   C+ L  L L  N L+     
Sbjct: 19  PQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 70  EIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
               L +L+ + L  N     +       L  L  L L    L  + P     ++ L+ L
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 129 MLINNSLSGSLPSRIDLSLPTVEVLD 154
            L +N+L  +LP      L  +  L 
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLF 159

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           + +++ + L  NR+S  +P+     L  L  L L +N      P A     +L  L L  
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLH 88
           NNLS A+P E    L  L+ + L  N   
Sbjct: 211 NNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 1/147 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  +   ++ L      ++   L  L  L +             +    L+ L +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
           N+       +I   L  L  + L   +L    P    +L +L+ L +  N L  V     
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLS 146
             +++L+ + L  N    S P    LS
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPRIDYLS 541

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 9e-13
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
                   ++P N+       K L L  N        +     +LQ L+L    +     
Sbjct: 14  CMELNFY-KIPDNLPFST---KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
               +L+ L  + L  N +        + L +L+ LV     L  +    I ++ TLK L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 129 MLINNSLSGSLPSRIDLSLPTVEVLD 154
            + +N +          +L  +E LD
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLD 155

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 8/160 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGS--YLPYLKALFLDKNMFH--GKIPSALSKCKQLQQL 56
             ++    L     +     N  S   LP L+ L L +N     G    +      L+ L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 57  NLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA--NLLNLEDLVLGMNILVGV 114
           +L FN +   +      L  L+ +  +++ L  ++       +L NL  L +        
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           F      +S+L+VL +  NS   +    I   L  +  LD
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 8/144 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMF-HGKIPSALSKCKQLQQLNLQ 59
           +SS+  +      L+  L      +L  LK L +  N+    K+P   S    L+ L+L 
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 60  FNNLSGAIPKEIGNLTMLKG----IYLEYNKLHGEIPHEIANLLNLEDLVLGMN-ILVGV 114
            N +      ++  L  +      + L  N ++  I       + L  L L  N   + V
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 115 FPAAIFNMSTLKVLMLINNSLSGS 138
               I  ++ L+V  L+       
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNE 240

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 20/171 (11%)

Query: 3   SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFN 61
           +I + RL       +   ++ + L  + +  L           S     + L+ +N +F 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 62  NLSGAIPKEI----------------GNLTMLKGIYLEYNKLH--GEIPHEIANLLNLED 103
                  K +                 +L  L+ + L  N L   G          +L+ 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 104 LVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           L L  N ++ +  +    +  L+ L   +++L       + LSL  +  LD
Sbjct: 378 LDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 5/156 (3%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM--FHGKIPSALSKCKQLQQLNLQ 59
           SS + + L +N+L   LP  +   L  L  L L  N   F G    +      L+ L+L 
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 60  FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
           FN +   +      L  L+ +  +++ L       +  +L NL  L +        F   
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 119 IFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
              +S+L+VL +  NS   +    I   L  +  LD
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 7/156 (4%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQF 60
           +S+  + L+ N +   +  N    L  L+ L    +        S     + L  L++  
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
            +        I   L+ L+ + +  N        +I   L NL  L L    L  + P A
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

Query: 119 IFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             ++S+L+VL + +N+   SL +     L +++VLD
Sbjct: 195 FNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLD 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.1 bits (141), Expect = 5e-11
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 4/143 (2%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
             ++ L      ++   L  L  L +             +    L+ L +  N+      
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 69  KEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
            +I   L  L  + L   +L  ++      +L +L+ L +  N    +       +++L+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226

Query: 127 VLMLINNSLSGSLPSRIDLSLPT 149
           VL    N +  +   +     P+
Sbjct: 227 VLDYSLNHIM-TSKKQELQHFPS 248

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +SS+  +++  N        +I + L  L  L L +       P+A +    LQ LN+  
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLL-NLEDLVLGMN 109
           NN           L  L+ +    N +      E+ +   +L  L L  N
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +++   +   N+ +  +LP  +      ++ L L+          A +    +Q+L + F
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
           N +   +P  +  N+ +L  + LE N L   +P  I  N   L  L +  N L  +    
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 119 IFNMSTLKVLMLINNSLS 136
               ++L+ L L +N L+
Sbjct: 161 FQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             ++ ++  ++N ++  +   +      L  L L  N       + L     L +++L +
Sbjct: 204 PIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 257

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L   +      +  L+ +Y+  N+L   +      +  L+ L L  N L+ V      
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQP 315

Query: 121 NMSTLKVLMLINNSLS 136
               L+ L L +NS+ 
Sbjct: 316 QFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 8e-09
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 25  YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLE 83
            L   K +    +       + L   +Q++ LNL    +   I          ++ +Y+ 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 101

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
           +N +    PH   N+  L  LVL  N L  +      N   L  L + NN+L   +    
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 144 DLSLPTVEVLD 154
             +  +++ L 
Sbjct: 161 FQATTSLQNLQ 171

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 3/132 (2%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
            Y      + +D                  + +  + + +       + +   ++ + L 
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 84  YNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSR 142
             ++  EI     A    ++ L +G N +  + P    N+  L VL+L  N LS SLP  
Sbjct: 78  DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 135

Query: 143 IDLSLPTVEVLD 154
           I  + P +  L 
Sbjct: 136 IFHNTPKLTTLS 147

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
              ++ + ++NN L   +  +       L+ L L  N     +   LS    L   N+ +
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSY 195

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N LS      +     ++ +   +N ++  +   +   + L  L L  N L     A + 
Sbjct: 196 NLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT--AWLL 245

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           N   L  + L  N L   +     + +  +E L 
Sbjct: 246 NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLY 278

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++++ ++ L  + +S      + + L  + +L L  N       S LS    L  L +  
Sbjct: 109 LTNLRELYLNEDNISD--ISPLAN-LTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTE 164

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           + +    P  I NLT L  + L YN++    P  +A+L +L      +N +  + P  + 
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA 218

Query: 121 NMSTLKVLMLINNSLSGSLP 140
           NM+ L  L + NN ++   P
Sbjct: 219 NMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 4e-11
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           M+ ++ +++ NN+++      + + L  L  L +  N       +A+    +L+ LN+  
Sbjct: 220 MTRLNSLKIGNNKITD--LSPLAN-LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N +S      + NL+ L  ++L  N+L  E    I  L NL  L L  N +  + P  + 
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330

Query: 121 NMSTLKVLMLINNSLS 136
           ++S +      N  + 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++++  + L  N+++   P    S L  L  L++  N       SAL     L++L L  
Sbjct: 65  LTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           +N+S   P  + NLT +  + L  N    ++   ++N+  L  L +  + +  V P  I 
Sbjct: 120 DNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IA 174

Query: 121 NMSTLKVLMLINNSLSG 137
           N++ L  L L  N +  
Sbjct: 175 NLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 5e-10
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++S+       N+++      + + +  L +L +  N       S L+   QL  L +  
Sbjct: 198 LTSLHYFTAYVNQITD--ITPVAN-MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGT 252

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N +S      + +LT LK + +  N++       + NL  L  L L  N L       I 
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 121 NMSTLKVLMLINNSLSGSLP 140
            ++ L  L L  N ++   P
Sbjct: 309 GLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 11/141 (7%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++      L    ++  + +     L  +  L +            +     L+ LNL  
Sbjct: 21  LAEGIRAVLQKASVTDVVTQ---EELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNG 75

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N ++   P  + NL  L  +Y+  NK+       + NL NL +L L  + +  + P  + 
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LA 129

Query: 121 NMSTLKVLMLINNSLSGSLPS 141
           N++ +  L L  N     L  
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 45  SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104
              +   +  +  LQ  +++  +      L  +  + +   K+   I   I  L NLE L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYL 71

Query: 105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
            L  N +  + P  + N+  L  L +  N ++
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKIT 101

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 3/139 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG-KIPSALSKCKQLQQLNLQ 59
           + S+  + L++N LS  L  +    L  LK L L  N +    + S       LQ L + 
Sbjct: 73  LGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 60  FNNLSGAIPKE-IGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAA 118
                  I +     LT L  + ++   L       + ++ ++  L L ++    +    
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 119 IFNMSTLKVLMLINNSLSG 137
              +S+++ L L + +L+ 
Sbjct: 192 ADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 5/147 (3%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
             +   +  +P  +      +K+L L  N         L  C  LQ L L+ + ++    
Sbjct: 12  GRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF-NMSTLKV 127
               +L  L+ + L  N L          L +L+ L L  N    +   ++F N++ L+ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 128 LMLINNSLSGSLPSRIDLSLPTVEVLD 154
           L + N      +       L ++  L+
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSY--LPYLKALFLDKNMFH--GKIPSALSKCKQLQQL 56
           + S+  + L+ N +  E  KN       P L+ L L +N      K    L   K L  L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 57  NLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP 116
           ++  N     +P        ++ + L    +   +   I     LE L +  N L     
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFSL 448

Query: 117 AAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                +  L+ L +  N L  +LP       P + V+ 
Sbjct: 449 ----FLPRLQELYISRNKLK-TLPD--ASLFPVLLVMK 479

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 14/136 (10%), Positives = 42/136 (30%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++++  +R+ N     E+ +   + L  L  L +           +L   + +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           +  +  +      L+ ++ + L    L       +        +         +   +  
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 121 NMSTLKVLMLINNSLS 136
            +  L   +L  + + 
Sbjct: 242 ELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 25/155 (16%)

Query: 1   MSSISDIRLTNNRLSGELPKNIG--SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNL 58
             S+  + L+ N L   + K       L  L +L + +N FH  +P +    ++++ LNL
Sbjct: 360 WPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 59  QFNNLSGAIPKEI------------------GNLTMLKGIYLEYNKLHGEIPHEIANLLN 100
               +   +   I                    L  L+ +Y+  NKL   +P + +    
Sbjct: 418 SSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLP-DASLFPV 474

Query: 101 LEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135
           L  + +  N L  V       +++L+ + L  N  
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 26  LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN 85
                    + +           +   +++L++    L   +      L  +K I +E +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 86  KLHGEIPHEIANLLNLEDLVLGMNILVGVF---PAAIFNMSTLKVLMLINNSLSGSLPSR 142
           K+         +L +LE L L  N++V  +    A      +L+ L+L  N L  S+   
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKT 379

Query: 143 IDL--SLPTVEVLD 154
            ++  +L  +  LD
Sbjct: 380 GEILLTLKNLTSLD 393

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKI--PSALSKCKQLQQLNLQ 59
            ++ ++R+  N ++ ++ K++ + L  +  + L  N          A    K+L  + + 
Sbjct: 121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 60  FNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
             N++  IP+  G    L  ++L+ NK+  ++       L NL  L L  N +  V   +
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 119 IFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           + N   L+ L L NN L   +P  +      ++V+ 
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVY 269

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 8/147 (5%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
            ++  L  ++PK++    P    L L  N             K L  L L  N +S   P
Sbjct: 38  CSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
                L  L+ +YL  N+L  E+P ++     L++L +  N +  V  +    ++ + V+
Sbjct: 94  GAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 129 MLINNSL-SGSLPSRIDLSLPTVEVLD 154
            L  N L S  + +     +  +  + 
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIR 177

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +++++ + L+ N +S  +     +  P+L+ L L+ N    K+P  L+  K +Q + L  
Sbjct: 215 LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 61  NNLSG------AIPKEIGNLTMLKGIYLEYNKL-HGEIPHEI-ANLLNLEDLVLGMN 109
           NN+S         P          G+ L  N + + EI       +     + LG  
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 4e-11
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 3/137 (2%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +++   +   N+ +  +LP  +      ++ L L+          A +    +Q+L + F
Sbjct: 50  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAI 119
           N +    P    N+ +L  + LE N L   +P  I  N   L  L +  N L  +     
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 120 FNMSTLKVLMLINNSLS 136
              ++L+ L L +N L+
Sbjct: 168 QATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 4e-10
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             ++ ++  ++N ++  +   +      L  L L  N       + L     L +++L +
Sbjct: 210 PIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L   +      +  L+ +Y+  N+L   +      +  L+ L L  N L+ V      
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQP 321

Query: 121 NMSTLKVLMLINNSLS 136
               L+ L L +NS+ 
Sbjct: 322 QFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 3/132 (2%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
            Y      + +D                  + +  + + +       + +   ++ + L 
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 84  YNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSR 142
             ++  EI     A    ++ L +G N +  + P    N+  L VL+L  N LS SLP  
Sbjct: 84  DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 141

Query: 143 IDLSLPTVEVLD 154
           I  + P +  L 
Sbjct: 142 IFHNTPKLTTLS 153

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
              ++ + ++NN L   +  +       L+ L L  N       S +     L   N+ +
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSY 201

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N LS      +     ++ +   +N ++  +   +   + L  L L  N L     A + 
Sbjct: 202 NLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT--AWLL 251

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           N   L  + L  N L   +     + +  +E L 
Sbjct: 252 NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLY 284

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 8e-11
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 5/159 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  + L +      + K     LP L+ L L  +  +   P A      L +L L F
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 61  NNLSGAI--PKEIGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPA 117
             LS A+       NL  L  + L  N++    +      L +L+ +    N +  V   
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 118 AI--FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            +      TL    L  NSL   +       +     + 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           + ++  + L+ N L  EL  +    LP +  + L KN             ++LQ L+L+ 
Sbjct: 313 LDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L+      I  +  +  I+L  NKL   +P      L    + L  N L  +      
Sbjct: 372 NALT-----TIHFIPSIPDIFLSGNKLV-TLPK---INLTANLIHLSENRLENLDILYFL 422

Query: 121 -NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             +  L++L+L  N  S     +     P++E L 
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 5/151 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNI--GSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNL 58
              I       + +  +  +N   G     ++ L L                K L+ LNL
Sbjct: 239 AHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 59  QFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAA 118
            +N ++    +    L  L+ + L YN L          L  +  + L  N +  +    
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 119 IFNMSTLKVLMLINNSLS--GSLPSRIDLSL 147
              +  L+ L L +N+L+    +PS  D+ L
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +  +  + L  N+++ ++       L  L+ L L  N+      S      ++  ++LQ 
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N+++    +    L  L+ + L  N L       I  + ++ D+ L  N LV +    + 
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155
                 ++ L  N L         L +P +++L  
Sbjct: 403 ----ANLIHLSENRLENLDILYFLLRVPHLQILIL 433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 42  KIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLN 100
           ++P  L+     ++L L FN +          L  L+ + L        I  E   NL N
Sbjct: 18  QVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 101 LEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS-GSLPSRIDLSLPTVEVLD 154
           L  L LG + +  + P A   +  L  L L    LS   L      +L  +  LD
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 38/141 (26%), Positives = 54/141 (38%), Gaps = 10/141 (7%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKI-----PSALSKCKQLQQ 55
           +  +  + L  NR S        S  P L+ LFL +NM                   LQ 
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 56  LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVF 115
           L L  N L+   P    +LT L+G+ L  N+L   + H      NLE L +  N L+   
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLLAPN 542

Query: 116 PAAIFNMSTLKVLMLINNSLS 136
           P    +   L VL + +N   
Sbjct: 543 PDVFVS---LSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 16/154 (10%)

Query: 3   SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62
            +  + ++ N  + ++  N  + +   +A  L                  +      F+N
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH-------------HIMGAGFGFHN 251

Query: 63  LSGAIPKEIGNLTM--LKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           +          L    ++ + L +  +          L +L+ L L  N +  +   A +
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            +  L+VL L  N L   L S     LP V  +D
Sbjct: 312 GLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYID 344

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
            Y   +K L ++    H    + +S    L++L +   +++      +  LT L  + + 
Sbjct: 63  EYAHNIKDLTINNI--HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
           ++     I  +I  L  +  + L  N  +      +  +  LK L +  + + 
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +S++  +R+    ++ +   N+   L  L  L +  +     I + ++   ++  ++L +
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMN 109
           N     I   +  L  LK + ++++ +H      I +   L  L     
Sbjct: 146 NGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 48  SKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG 107
           ++   L  + L   N++      I     +K + +         P  I+ L NLE L + 
Sbjct: 41  AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 108 MNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
              +       +  +++L +L + +++   S+ ++I+ +LP V  +D
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSID 142

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++S++ + ++++     +   I + LP + ++ L  N     I   L    +L+ LN+QF
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQF 168

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKL 87
           + +       I +   L  +Y     +
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTI 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 1e-10
 Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 12/154 (7%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQF 60
           S  + + L++N LS    +   + L  L +L L  N  +  I S A      L+ L+L  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMN----ILVGV 114
           N+L   + + +  +L  L+ + L  N +   +      ++  L+ L L  N      V +
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP 148
                  +  L +L L +N L   LP      LP
Sbjct: 156 I-KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 43  IPSALSKCKQLQQLNLQFNNLSGAIPKEI--GNLTMLKGIYLEYNKLHGEIPHEI-ANLL 99
           +P +L        L+L  NNLS  +  E     LT L  + L +N L+  I  E    + 
Sbjct: 33  VPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 100 NLEDLVLGMNILVGVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           NL  L L  N L       +F ++  L+VL+L NN +   +       +  ++ L 
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%)

Query: 10  TNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS--ALSKCKQLQQLNLQFNNLSGAI 67
           +  +L   +P+++     Y   L L  N    ++ +    ++   L  L L  N+L+  I
Sbjct: 26  SKQQLP-NVPQSL---PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FI 79

Query: 68  PKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
             E    +  L+ + L  N LH  +   + ++L  LE L+L  N +V V   A  +M+ L
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138

Query: 126 KVLMLINNSLSGSLPSRI---DLSLPTVEVLD 154
           + L L  N +S   P  +      LP + +LD
Sbjct: 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLD 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 9e-07
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI 67
            L++N L   L + + S L  L+ L L  N       +A     QLQ+L L  N +S   
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 68  PKEI----GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMN 109
           P E+      L  L  + L  NKL      ++  L       L ++
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 4/134 (2%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
              +++RL NN  +      I   LP L+ +    N        A      + ++ L  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 62  NLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAI 119
            L   +  ++   L  LK + L  N++   + ++    L ++  L L  N +  V P A 
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 120 FNMSTLKVLMLINN 133
             + +L  L L+ N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 54  QQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNIL 111
            +L L  N  +      I   L  L+ I    NK+  +I          + +++L  N L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 112 VGVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             V    +F  + +LK LML +N ++  + +   + L +V +L 
Sbjct: 94  ENV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS 135

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
            S +  + L  N +       + +    L+ L L  N  +  +        +L+ L+L  
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSS 200

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L+  +  E  +   +  I L  NKL   I   +    NLE   L  N          F
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG-TLRDF 257

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                +V  +   ++   L  + +       +  
Sbjct: 258 FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGH 290

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 8/122 (6%)

Query: 26  LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN 85
               K   +  +     + S       +++L+L  N LS     ++   T L+ + L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 86  KLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDL 145
            L+     ++ +L  L  L L  N +       +    +++ L   NN++S  +      
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQ 120

Query: 146 SL 147
             
Sbjct: 121 GK 122

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 14/155 (9%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +S++  + L NN +  EL        P ++ L    N    ++    S+ +  + + L  
Sbjct: 79  LSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS-RVSC--SRGQGKKNIYLAN 129

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
           N ++     + G  + ++ + L+ N++         A+   LE L L  N +  V    +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQV 188

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
              + LK L L +N L+  +      S   V  + 
Sbjct: 189 V-FAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWIS 220

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 22/147 (14%), Positives = 41/147 (27%), Gaps = 7/147 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             ++  + L  N +  ++   +      LK L L  N     +         +  ++L+ 
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L   I K +     L+   L  N  H           N     +    +  +      
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKL-TGQNE 280

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSL 147
              T+  L          LP+     L
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRL 307

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 66  AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
           AI +   N    K   +  + L   +     +  N+++L L  N L  +  A +   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 126 KVLMLINNSLS 136
           ++L L +N L 
Sbjct: 61  ELLNLSSNVLY 71

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGA 66
            LT N +   L     S L  L+ L   +      + +  +   K L++LN+  N +   
Sbjct: 82  ILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 67  IPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLE----DLVLGMNILVGVFPAAIF 120
              E   NLT L+ + L  NK+   I       L  +      L L +N +        F
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAF 197

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
               LK L L  N L  S+P  I   L +++ + 
Sbjct: 198 KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG-KIPSALSKCKQLQQLNLQFNNLSGA 66
                 L+  L      +L  LK L +  N+    K+P   S    L+ L+L  N +  +
Sbjct: 106 VAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-S 163

Query: 67  IPKEI-GNLTMLKGI----YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
           I       L  +  +     L  N ++  I       + L++L L  N L  V       
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 122 MSTLKVLMLINN 133
           +++L+ + L  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 29  LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKL 87
            K L L  N        +     +LQ L+L    +   I      +L+ L  + L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 88  HGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS 141
              +     + L +L+ LV     L  +    I ++ TLK L + +N +  S   
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKL 141

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 43  IPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNL 101
           IP  L      + L+L FN L         +   L+ + L   ++   I      +L +L
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 102 EDLVLGMNILVGVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             L+L  N +  +     F  +S+L+ L+ +  +L+ SL +     L T++ L+
Sbjct: 79  STLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 130

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
            S +    L+ +++   L K++ S+   L+ L L +N  +    +A      L +LNL  
Sbjct: 274 ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
           N L  +I   +  NL  L+ + L YN +   +  +    L NL++L L  N L  V    
Sbjct: 333 NFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGI 390

Query: 119 IFNMSTLKVLMLINNSL 135
              +++L+ + L  N  
Sbjct: 391 FDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 7/136 (5%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNL-SG 65
           +++        +  N    L  L  L LD N F      A +    L+ L L   NL   
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118

Query: 66  AIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNM- 122
            +       LT L+ + L  N +    P     N+     L L  N +  +         
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI-CEEDLLNF 177

Query: 123 --STLKVLMLINNSLS 136
                 +L L + +L 
Sbjct: 178 QGKHFTLLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 8e-09
 Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 27  PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYN 85
            ++  + L  N       ++ S+ + LQ L ++       I       L+ L  + L+YN
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 86  KLHGEIPHEI-ANLLNLEDLVLGMNILVGVF-PAAIF-NMSTLKVLMLINNSLSGSLPSR 142
           +   ++       L NLE L L    L G       F  +++L++L+L +N++    P+ 
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 143 IDLSLPTVEVLD 154
             L++    VLD
Sbjct: 149 FFLNMRRFHVLD 160

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 19/179 (10%), Positives = 50/179 (27%), Gaps = 27/179 (15%)

Query: 1   MSSISDIRLTNNRLSGELPKNI----------GSYLPYLKALFLDKNMFHGKIPSALSKC 50
           M     + LT N++   + +               L  +    +++     +      K 
Sbjct: 153 MRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 51  KQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLL---------- 99
             +  L+L  N    ++ K     +   K   L  +  +                     
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 100 ----NLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                ++   L  + +  +  +   + + L+ L L  N ++  +       L  +  L+
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLN 329

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
            ++  + L+NNR++  +  +       L+AL L  N  +     + S    L+ L+L +N
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 62  NLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIA--NLLNLEDLVLGMNILVGVFPAA 118
            LS  +       L+ L  + L  N     +       +L  L+ L +G           
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 119 IF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            F  ++ L+ L +  + L  S   +   S+  V  L 
Sbjct: 169 DFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLI 204

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 4/149 (2%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI 67
            LT+N ++  + ++  S L  L+ L L  N       S       L  LNL  N      
Sbjct: 82  VLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140

Query: 68  PKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
              +  +LT L+ + +       +I  +  A L  LE+L +  + L    P ++ ++  +
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 126 KVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             L+L        L         +VE L+
Sbjct: 201 SHLILHMKQHI-LLLEIFVDVTSSVECLE 228

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 10/162 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++ +  +R+ N     ++ +   + L +L+ L +D +      P +L   + +  L L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI--------ANLLNLEDLVLGMNILV 112
                 +   +   + ++ + L    L      E+               ++ +    L 
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 113 GVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
                 +  +S L  L    N L  S+P  I   L +++ + 
Sbjct: 268 -QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGA 66
            L+ N LS  L  +    L  L  L L  N +      S  S   +LQ L +   +    
Sbjct: 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 67  IPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMST 124
           I ++    LT L+ + ++ + L      +   ++ N+  L+L M   + +    +   S+
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 125 LKVLMLINNSLSGSLPSRI 143
           ++ L L +  L     S +
Sbjct: 224 VECLELRDTDLDTFHFSEL 242

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 43  IPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNL 101
           IPS L++   ++ L+L  N ++     ++     L+ + L  N ++  I  +  ++L +L
Sbjct: 46  IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 102 EDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155
           E L L  N L  +  +    +S+L  L L+ N       + +   L  +++L  
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 10/143 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++ + ++ +  + L           +  +  L L        +   +     ++ L L+ 
Sbjct: 173 LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 61  NNLSGAIPKEI--------GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILV 112
            +L      E+              + + +    L  ++   +  +  L +L    N L 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 113 GVFPAAIFNMSTLKVLMLINNSL 135
            V       +++L+ + L  N  
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPW 313

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++      L    ++  + +   + L  +  L  D+     K    +     L Q+N   
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSN 77

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L+   P  + NLT L  I +  N++    P  +ANL NL  L L  N +  + P  + 
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LK 131

Query: 121 NMSTLKVLMLINNSLSG 137
           N++ L  L L +N++S 
Sbjct: 132 NLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++ +++++L  N++S   P    + L  L  L L++N       S +S  K L  L L F
Sbjct: 264 LTKLTELKLGANQISNISPL---AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 318

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           NN+S   P  + +LT L+ ++   NK+       +ANL N+  L  G N +  + P  + 
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LA 372

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDL 145
           N++ +  L L + + + +  +    
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKAN 397

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
           + L  L+ L +  N       S L+K   L+ L    N +S   P  +G LT L  + L 
Sbjct: 174 ANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG 137
            N+L  +    +A+L NL DL L  N +  + P  +  ++ L  L L  N +S 
Sbjct: 230 GNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +++++ + L NN+++      + + L  L  L L  N       SALS    LQQL+   
Sbjct: 111 LTNLTGLTLFNNQITD--IDPLKN-LTNLNRLELSSNTISD--ISALSGLTSLQQLSFG- 164

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N ++   P  + NLT L+ + +  NK+       +A L NLE L+   N +  + P  + 
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LG 218

Query: 121 NMSTLKVLMLINNSLSG 137
            ++ L  L L  N L  
Sbjct: 219 ILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 45  SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104
              +   +  +  L   N++  +     +L  +  +  +   +  +    +  L NL  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG 137
               N L  + P  + N++ L  +++ NN ++ 
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++ +  +   NN++S     ++ + L  +  L    N      P  L+   ++ QL L  
Sbjct: 330 LTKLQRLFFYNNKVSD--VSSLAN-LTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
              + A      N+++   +      L    P  I++  +  +  +  N+         +
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT-NEVSY 441

Query: 121 NMSTLKVLMLINNSLSGSLP 140
             S    +     + SG++ 
Sbjct: 442 TFSQPVTIGKGTTTFSGTVT 461

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 6e-10
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 22/142 (15%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           + I+ + + +N L+  LP         L+ L +  N     +P       +L   +    
Sbjct: 61  AHITTLVIPDNNLT-SLPALPPE----LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
           +L    P     L  L   ++  N+L   +P        L++L +  N L    PA    
Sbjct: 115 HL----PALPSGLCKL---WIFGNQLT-SLPVLPP---GLQELSVSDNQL-ASLPALPSE 162

Query: 122 MSTLKVLMLINNSLSGSLPSRI 143
           +  L      NN L+ SLP   
Sbjct: 163 LCKLWAY---NNQLT-SLPMLP 180

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 22/143 (15%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
              + ++ +++N+L+  LP         L  L+   N     +P   S    LQ+L++  
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSE----LCKLWAYNNQLT-SLPMLPS---GLQELSVSD 190

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L+ ++P     L  L   +   N+L   +P   +    L++L++  N L    P    
Sbjct: 191 NQLA-SLPTLPSELYKL---WAYNNRLT-SLPALPS---GLKELIVSGNRL-TSLPVLP- 240

Query: 121 NMSTLKVLMLINNSLSGSLPSRI 143
             S LK LM+  N L+ SLP   
Sbjct: 241 --SELKELMVSGNRLT-SLPMLP 260

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
            S + ++ ++ NRL+  LP         LK L +  N     +P   S    L  L++  
Sbjct: 220 PSGLKELIVSGNRLT-SLPVLPSE----LKELMVSGNRL-TSLPMLPS---GLLSLSVYR 270

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNI 110
           N L+  +P+ + +L+    + LE N L  E   +    +       G  I
Sbjct: 271 NQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 50  CKQLQQLNLQFNNLSGAIPKEIG-NLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM 108
                 LN+  + L+  +P  +  ++T L    +  N L   +P     L  LE   +  
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAHITTL---VIPDNNLT-SLPALPPELRTLE---VSG 90

Query: 109 NILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSL 147
           N L    P     +  L +       L         L +
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWI 128

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 7e-10
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
            S +  + L  N +       + +    L+ L L  N  +  +   +    +L+ L+L  
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSS 200

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L+  +  E  +   +  I L  NKL   I   +    NLE   L  N          F
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             S  + +  +       L  + +       +  
Sbjct: 259 --SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 8e-10
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 22  IGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81
           I       K   +  +     + S       +++L+L  N LS     ++   T L+ + 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 82  LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
           L  N L+     ++ +L  L  L L  N +       +    +++ L   NN++S
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 7e-09
 Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 6/144 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             ++  + L  N +  ++   +      LK L L  N     +         +  ++L+ 
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L   I K +     L+   L  N  H           N     +    +  +      
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 121 NMSTLKVLMLINNSLSGSLPSRID 144
             +   +                D
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFAD 305

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +S++  + L NN +  EL        P ++ L    N       S        + + L  
Sbjct: 79  LSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCSRGQG---KKNIYLAN 129

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
           N ++     + G  + ++ + L+ N++         A+   LE L L  N +  V    +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQV 188

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
              + LK L L +N L+  +      S   V  + 
Sbjct: 189 V-FAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWIS 220

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 16/72 (22%), Positives = 30/72 (41%)

Query: 66  AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
           AI +   N    K   +  + L   +     +  N+++L L  N L  +  A +   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 126 KVLMLINNSLSG 137
           ++L L +N L  
Sbjct: 61  ELLNLSSNVLYE 72

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
           L    L+ +L   +   LP L  L L  N     +P        L  L++ FN L+ ++P
Sbjct: 62  LDRAELT-KLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116

Query: 69  KEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIF-NMSTL 125
                 L  L+ +YL+ N+L   +P  +      LE L L  N L  + PA +   +  L
Sbjct: 117 LGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENL 174

Query: 126 KVLMLINNSLSGSLPSRI--DLSLPTV 150
             L+L  NSL  ++P        LP  
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFA 200

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 8/153 (5%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           +S  ++      L+  LP ++         L L +N+ +    + L    +L QLNL   
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
            L+  +    G L +L  + L +N+L   +P     L  L  L +  N L  +   A+  
Sbjct: 66  ELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 122 MSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           +  L+ L L  N L  +LP  +    P +E L 
Sbjct: 123 LGELQELYLKGNELK-TLPPGLLTPTPKLEKLS 154

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 9/155 (5%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKN-MFHGKIPSALSKCKQLQQLNLQF 60
           SS+ ++R+ +NR+  ++PK + S L  +  + +  N + +           +L  L +  
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAI 119
             L+  IPK       L  ++L++NK+   I  E       L  L LG N +  +   ++
Sbjct: 182 AKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             + TL+ L L NN LS  +P+ +   L  ++V+ 
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVY 270

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSG 65
           +R++  +L+  +PK++      L  L LD N     I    L +  +L +L L  N +  
Sbjct: 177 LRISEAKLT-GIPKDL---PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 66  AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMN----ILVGVFP--AAI 119
                +  L  L+ ++L+ NKL   +P  + +L  L+ + L  N    + V  F      
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 120 FNMSTLKVLMLINNSLS 136
              +    + L NN + 
Sbjct: 291 VKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
            ++  L   +PK I    P    L L  N             + L  L L  N +S    
Sbjct: 40  CSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
           K    L  L+ +Y+  N L  EIP  +    +L +L +  N +  V       +  +  +
Sbjct: 96  KAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 129 MLINNSLSGS 138
            +  N L  S
Sbjct: 153 EMGGNPLENS 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
            S +  + L +N++   +     S+LP L+ L LD N    ++P+ L   K LQ + L  
Sbjct: 216 YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 61  NNLSGAIPKEI-------GNLTMLKGIYLEYNKL-HGEIPHEI-ANLLNLEDLVLGMN 109
           NN++  +                  GI L  N + + E+       + +   +  G  
Sbjct: 274 NNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 15/153 (9%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA 66
           I   NN+L+  LP+   S    L+ L +  N     +P        L+ L++  N L  +
Sbjct: 145 INADNNQLT-MLPELPTS----LEVLSVRNNQL-TFLPELPE---SLEALDVSTNLLE-S 194

Query: 67  IPKEIGNLTMLK----GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNM 122
           +P         +          N++   IP  I +L     ++L  N L      ++   
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 123 STLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155
           +            S S   +  L  P  + +  
Sbjct: 254 TAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 7e-08
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 21/141 (14%)

Query: 8   RLTNNRLSGELPKNIGSYLP-----YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62
           +     L GE      S L          L L++      +P  L    Q+  L +  N 
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNA 91

Query: 63  LSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNM 122
           L  ++P+   +L  L       N+L   +P   A+L +L+   +  N L  + P      
Sbjct: 92  LI-SLPELPASLEYL---DACDNRLS-TLPELPASLKHLD---VDNNQLT-MLPELP--- 139

Query: 123 STLKVLMLINNSLSGSLPSRI 143
           + L+ +   NN L+  LP   
Sbjct: 140 ALLEYINADNNQLT-MLPELP 159

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 5/109 (4%)

Query: 1   MSSISDIRLTNNRLSGELPKNIG---SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLN 57
             S+  + ++ N L   LP                   +N     IP  +        + 
Sbjct: 179 PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 58  LQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVL 106
           L+ N LS  I + +   T     +            +      L D V 
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 5e-09
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 6/159 (3%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSY----LPYLKALFLDKNMFHGKIPSALSKCKQLQQLN 57
           +++    ++N +L G+L      Y    L  L    +  ++F             +   N
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 58  LQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
              +            ++    +    N L   +     +L  LE L+L MN L  +   
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 118 A-IF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           A +   M +L+ L +  NS+S            ++  L+
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 8/157 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFH--GKIPSALSKCKQLQQLNL 58
           +S    +  +NN L+  + +N G  L  L+ L L  N      KI    ++ K LQQL++
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 59  QFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
             N++S    K        L  + +  N L   I   +     ++ L L  N +    P 
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 118 AIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            +  +  L+ L + +N L  S+P  I   L +++ + 
Sbjct: 439 QVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
           ++ N +S EL  +    L  L+ L +  N       S     ++L+ L+L  N L   I 
Sbjct: 28  ISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS 85

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPH--EIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
                   LK + L +N     +P   E  N+  L+ L L    L       I +++  K
Sbjct: 86  --CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 127 VLMLINNSL 135
           VL+++  + 
Sbjct: 143 VLLVLGETY 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNL-SGAI 67
           +++NR+   L  ++  +   L+ L L  N    KI         L+ L+L FN   +  I
Sbjct: 52  ISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPI 107

Query: 68  PKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKV 127
            KE GN++ LK + L    L       IA+L   + L++                   + 
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167

Query: 128 LML--INNSLSGSLPSRIDLSLPTVEVLD 154
           L +    N     +      ++  +E+ +
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSN 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGAI 67
           L +N+L   LP  I   L  L+ L++  N     +P     +   L +L L  N L  ++
Sbjct: 68  LNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SL 124

Query: 68  PKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIF-NMST 124
           P  +  +LT L  + L YN+L   +P  +   L +L++L L  N L  V P   F  ++ 
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTE 182

Query: 125 LKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           LK L L NN L   +P     SL  +++L 
Sbjct: 183 LKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 29  LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKL 87
            K L L  N        A  +  +L+ L L  N L   +P  I   L  L+ +++  NKL
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 88  HGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIF-NMSTLKVLMLINNSLSGSLPSRI 143
              +P  +   L+NL +L L  N L  + P  +F +++ L  L L  N L  SLP  +
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++ ++ + L  N+L   L   +   L  L  L L  N              QL +L L  
Sbjct: 58  LTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAA 118
           N L  ++P  +   LT LK + L  N+L   IP      L NL+ L L  N L  V   A
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174

Query: 119 IFNMSTLKVLMLINN 133
              +  L+ + L  N
Sbjct: 175 FDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 30  KALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLH 88
           + L L          +      +L  LNL +N L   +   +  +LT L  + L  N+L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 89  GEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMST-LKVLMLINNSLSGSLP 140
             +P  +  +L  L+ L LG N L  + P+ +F+  T LK L L  N L  S+P
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQ-SIP 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 54  QQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLL-NLEDLVLGMNILV 112
           ++L+LQ   L+         LT L  + L+YN+L   +   + + L  L  L L  N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 113 GVFPAAIFNMST-LKVLMLINNSLSGSLPSRI 143
            + P  +F+  T L  L L  N L  SLPS +
Sbjct: 97  SL-PLGVFDHLTQLDKLYLGGNQLK-SLPSGV 126

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 9/149 (6%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP--SALSKCKQLQQLNL 58
           +S ++ I + N R    +  +    LP LK L +         P  + +        L +
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137

Query: 59  QFNNLSGAIPKEI--GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP 116
             N    +IP     G       + L  N     +     N   L+ + L  N  + V  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 117 AAIFN--MSTLKVLMLINNSLSGSLPSRI 143
              F    S   +L +   S++ +LPS+ 
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 5/120 (4%)

Query: 26  LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEY 84
            P  + L L +         A S    + ++ +  +     +      NL+ +  I +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 85  NKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPA--AIFNMSTLKVLMLINNSLSGSLPS 141
            +    I  +    L  L+ L +    L  +FP    +++     +L + +N    S+P 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 6e-08
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
            +LP L++L+L  N       + LS+  +L  L+L+ N +S  +P  +  LT L+ +YL 
Sbjct: 128 VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135
            N +       +A L NL+ L L     +        N+     +   + SL
Sbjct: 184 KNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 12/115 (10%)

Query: 24  SYLPYLKALFLDKNMFHGKIP--SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81
           + L  L  LFLD+N    KI   S+L   K+L+ L+L+ N +S      + +L  L+ +Y
Sbjct: 84  TNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLY 137

Query: 82  LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
           L  NK+       ++ L  L+ L L  N +  + P  +  ++ L+ L L  N +S
Sbjct: 138 LGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
           L    ++  + +   + L  +  +  + +     +   +     + +L L  N L+   P
Sbjct: 28  LKKKSVTDAVTQ---NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTDIKP 82

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
             + NL  L  ++L+ NK+  ++   + +L  L+ L L  N +  +    + ++  L+ L
Sbjct: 83  --LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 136

Query: 129 MLINNSLS 136
            L NN ++
Sbjct: 137 YLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 45  SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104
                  +  + NL+  +++ A+      L  +  I    + +   +   I  L N+  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 70

Query: 105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
            L  N L  + P  + N+  L  L L  N + 
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 9e-08
 Identities = 32/165 (19%), Positives = 48/165 (29%), Gaps = 15/165 (9%)

Query: 1   MSSISDIRLTNNRLSG---ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLN 57
              ++ + L N   +     L +      P LK L + +          +     L  L+
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 58  LQFNNLSGAI-------PKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNI 110
           L  N   G         P +   L +L           G      A  + L+ L L  N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 111 LVGVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           L     A      S L  L L    L   +P  +      + VLD
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL---PAKLSVLD 280

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 35/161 (21%), Positives = 46/161 (28%), Gaps = 15/161 (9%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKC----KQLQQLN 57
             +  + +                 P L  L L  N   G+     + C      LQ L 
Sbjct: 149 PGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 58  LQFNN---LSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLL-NLEDLVLGMNILVG 113
           L+       SG           L+G+ L +N L         +    L  L L    L  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 114 VFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           V        + L VL L  N L    PS     LP V  L 
Sbjct: 268 VPKGLP---AKLSVLDLSYNRLD-RNPS--PDELPQVGNLS 302

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 32  LFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGE 90
           + L++N      P A S  K+L++++L  N +S  +  +    L  L  + L  NK+  E
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 91  IPHEI-ANLLNLEDLVLGMNILVGVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDLSLP 148
           +P  +   L +L+ L+L  N +  +     F ++  L +L L +N L  ++       L 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLR 152

Query: 149 TVEVL 153
            ++ +
Sbjct: 153 AIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 54  QQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILV 112
            ++ L+ N +    P        L+ I L  N++  E+  +    L +L  LVL  N + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 113 GVFPAAIF-NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
              P ++F  + +L++L+L  N ++  L       L  + +L 
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 36  KNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI 95
           ++ F  +      +   ++ L+L   +L+  +   +  L ++  + L +N+L   +P  +
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPAL 482

Query: 96  ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLS-LPTVEVLD 154
           A L  LE L    N L  V    + N+  L+ L+L NN L     +   L   P + +L+
Sbjct: 483 AALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLN 539

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
           L +  L+  +  ++   L  +  L L  N     +P AL+  + L+ L    N L   + 
Sbjct: 448 LAHKDLT--VLCHLE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD 502

Query: 69  KEIGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMN 109
             + NL  L+ + L  N+L        + +   L  L L  N
Sbjct: 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 43  IPSALSKCKQLQQLNLQFNNLSGAIPKE-IGNLTMLKGIYLEYNKLHGEIPHEI-ANLLN 100
               L   + L +L ++       +    +  L  L+ + +  + L   +  +       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 101 LEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135
           L  L L  N L  +         +L+ L+L  N L
Sbjct: 82  LSRLNLSFNALESL-SWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             +++++ + N +    L       L  L+ L + K+      P A     +L +LNL F
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLH 88
           N L     K +  L+ L+ + L  N LH
Sbjct: 90  NALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 11/115 (9%)

Query: 50  CKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHE-IANLLNLEDLVLGM 108
                 L    +         +     L  +Y+E  +    +    +  L  L +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 109 NILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI--DLSLPTVE------VLDC 155
           + L  V P A      L  L L  N+L  SL  +    LSL  +          C
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSC 119

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 8/150 (5%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGAI 67
              N L   +       LP L+ L +        +P        Q   L++Q N     I
Sbjct: 87  EKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 68  PKEI--GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF-NMST 124
            +    G       ++L  N +  EI +   N   L++L L  N  +   P  +F   S 
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 125 LKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             +L +    +  SLPS    +L  +    
Sbjct: 204 PVILDISRTRIH-SLPSYGLENLKKLRARS 232

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 9e-07
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 8/143 (5%)

Query: 3   SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62
           S        ++++ E+P ++         L             A S    L+++ +  N+
Sbjct: 10  SNRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 63  LSGAIPKEI-GNLTMLKGIYLE-YNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAI 119
           +   I  ++  NL  L  I +E  N L   I  E   NL NL+ L++    +  +     
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

Query: 120 FNMSTLKVLMLINNSLSGSLPSR 142
            +     +L + +N    ++   
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERN 147

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 32/183 (17%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQF 60
            +  ++R    +L   + K   S    L+ + + +N     I +   S   +L ++ ++ 
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 61  NNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMN-----ILVG 113
            N    I  E   NL  L+ + +    +   +P     + L    L +  N     I   
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 114 VF--------------------PAAIFNMSTL-KVLMLINNSLSGSLPSRIDLSLPTVEV 152
            F                      + FN + L ++ +  NN+L   LP+ +        +
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI 206

Query: 153 LDC 155
           LD 
Sbjct: 207 LDI 209

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 28/150 (18%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
           L N  LS  LP+        L++L    N    ++P      K L   N     LS   P
Sbjct: 78  LNNLGLS-SLPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 69  K---------------EIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVG 113
                           E+ N + LK I ++ N L  ++P       +LE +  G N L  
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLEE 187

Query: 114 VFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
           +    + N+  L  +   NNSL   LP   
Sbjct: 188 LPE--LQNLPFLTAIYADNNSLK-KLPDLP 214

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 14/147 (9%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             S+  I   NN+L  ELP  + + LP+L A++ D N    K+P        L+ +    
Sbjct: 172 PPSLEFIAAGNNQLE-ELP-ELQN-LPFLTAIYADNNSLK-KLPDLPL---SLESIVAGN 224

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L      E+ NL  L  IY + N L   +P    +L  L      +  L    P    
Sbjct: 225 NILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL----PELPQ 277

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLSL 147
           +++ L V   I + LS   P+   L+ 
Sbjct: 278 SLTFLDVSENIFSGLSELPPNLYYLNA 304

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 21/142 (14%)

Query: 19  PKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNL---- 74
           P+N+     +L+      +    ++P      K   +    ++      P   G      
Sbjct: 5   PRNVS--NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 75  ---------TMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
                         + L    L   +P       +LE LV   N L    P    ++ +L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSL 116

Query: 126 KVLMLINNSLSGSLPSRIDLSL 147
            V      +LS   P    L +
Sbjct: 117 LVDNNNLKALSDLPPLLEYLGV 138

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 28/151 (18%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQL------- 53
             S+ ++ ++NN+L  ELP         L+ L    N    ++P      KQL       
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPELPQNLKQLHVEYNPL 369

Query: 54  --------QQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLV 105
                      +L+ N+    +P+   NL  L   ++E N L  E P    ++   EDL 
Sbjct: 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQL---HVETNPLR-EFPDIPESV---EDLR 422

Query: 106 LGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
           +    +V  +  A      L+  +  ++   
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 18/133 (13%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
             S++ + ++ N  S      +    P L  L    N    +I S       L++LN+  
Sbjct: 276 PQSLTFLDVSENIFS-----GLSELPPNLYYLNASSN----EIRSLCDLPPSLEELNVSN 326

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N L   +P     L  L      +N L  E+P       NL+ L +  N L   FP    
Sbjct: 327 NKLI-ELPALPPRLERL---IASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPE 377

Query: 121 NMSTLKVLMLINN 133
           ++  L++   +  
Sbjct: 378 SVEDLRMNSHLAE 390

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 32  LFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEI 91
           L+LD N F   +P  LS  K L  ++L  N +S    +   N+T L  + L YN+L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 92  PHEI-ANLLNLEDLVLGMNILVGVFPAAIF-NMSTLKVLMLINN 133
           P      L +L  L L  N +  V P   F ++S L  L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGAN 136

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 15/141 (10%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
           S L   K L L  N    KI S+LS  + L+ L+L  N +   I         L+ +++ 
Sbjct: 45  STLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPSR 142
           YN++       I  L+NL  L +  N +        +  +  L+ L+L  N L       
Sbjct: 102 YNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

Query: 143 IDLS---------LPTVEVLD 154
              S         LP ++ LD
Sbjct: 160 NATSEYRIEVVKRLPNLKKLD 180

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 12/115 (10%)

Query: 24  SYLPYLKALFLDKNMFHGKIP--SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81
           + L  L+ L+LD N    +I   S L+    LQ L++    +S   P  + NL+ L  + 
Sbjct: 126 AGLSNLQVLYLDLN----QITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 82  LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
            + NK+  +I   +A+L NL ++ L  N +  V P  + N S L ++ L N +++
Sbjct: 180 ADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           +++   I    + ++  + +   + L  +  L              +     L  L L+ 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKD 72

Query: 61  NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
           N ++   P  + NLT +  + L  N L  +    IA L +++ L L    +  V P  + 
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 121 NMSTLKVLMLINNSLS 136
            +S L+VL L  N ++
Sbjct: 127 GLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 24  SYLPYLKALFLDKNMFHGKIP--SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81
           + L  L+ L +       ++   + L+   +L  L    N +S   P  + +L  L  ++
Sbjct: 148 AGLTNLQYLSIGNA----QVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 82  LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135
           L+ N++    P  +AN  NL  + L    +         N+    V+   + + 
Sbjct: 202 LKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 8e-06
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 29  LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKL 87
            KAL L +N         +S   +L+ L L  N +  ++   +      L+ + + +N+L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 88  HGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF-NMSTLKVLMLINNSL-SGSLPSRIDL 145
              I      + +L  L L  N    +     F N++ L  L L         L     L
Sbjct: 113 Q-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 146 SLPTVE 151
            L  + 
Sbjct: 170 HLSCIL 175

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 7/150 (4%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI 67
            + N        + + S    +    L  +                  LN   N  + ++
Sbjct: 311 HVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 68  PKEIGNLTMLKGIYLEYNKLH--GEIPHEIANLLNLEDLVLGMNIL-VGVFPAAIFNMST 124
            +    L  L+ + L+ N L    ++     N+ +LE L + +N L    +        +
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429

Query: 125 LKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
           + VL L +N L+GS+   +    P V+VLD
Sbjct: 430 ILVLNLSSNMLTGSVFRCL---PPKVKVLD 456

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 8/157 (5%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFH--GKIPSALSKCKQLQQLNL 58
            SS + +  T N  +  + +   + L  L+ L L +N      K+         L+ L++
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 59  QFNNL-SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPA 117
             N+L S A  +       +  + L  N L G +   +     ++ L L  N +    P 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRI-MSIPK 467

Query: 118 AIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
            + ++  L+ L + +N L  S+P  +   L +++ + 
Sbjct: 468 DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 26  LPYLKALFLDKNMFHGKIPSAL-SKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLE 83
           +  L+ L +  N  +        +  + +  LNL  N L+G++ + +   + +L    L 
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL---DLH 458

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINN 133
            N++   IP ++ +L  L++L +  N L  V       +++L+ + L +N
Sbjct: 459 NNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 32  LFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGE 90
           L L+ N           K  QL +L+L  N +  ++P  +   LT L  +YL  NKL   
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-S 90

Query: 91  IPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINN 133
           +P+ +   L  L++L L  N L  V       +++L+ + L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI 67
            LT N+L   LP  +   L  LK L L +N           K   L  LNL  N L    
Sbjct: 91  ILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149

Query: 68  PKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIF-NMSTL 125
                 LT L  + L YN+L   +P  +   L  L+DL L  N L  V P  +F  +++L
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSL 207

Query: 126 KVLMLINN 133
           + + L +N
Sbjct: 208 QYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 18/143 (12%)

Query: 6   DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG 65
              L    ++ +        L  +  +  + +    K    +     ++ L L  N L  
Sbjct: 23  KANLKKKSVT-DAVTQNE--LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKL-- 75

Query: 66  AIPKEIG---NLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFN 121
               +I     LT L  + L  N+L   +P+ +   L NL++LVL  N L  + P  +F+
Sbjct: 76  ---HDISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFD 130

Query: 122 -MSTLKVLMLINNSLSGSLPSRI 143
            ++ L  L L +N L  SLP  +
Sbjct: 131 KLTNLTYLNLAHNQLQ-SLPKGV 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 27/129 (20%)

Query: 30  KALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-------------GN--- 73
           + L+L  N      P        L++L L  N L  A+P  +              N   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 74  ---------LTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMST 124
                    L  LK +++  NKL  E+P  I  L +L  L L  N L  +   A   +S+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 125 LKVLMLINN 133
           L    L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 54  QQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILV 112
           Q L L  N ++   P    +L  LK +YL  N+L   +P  +  +L  L  L LG N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 113 GVFPAAIFNMST-LKVLMLINNSLSGSLPSRID 144
            V P+A+F+    LK L +  N L+  LP  I+
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE 132

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 8   RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI 67
            L  N L   LP  +   L  L  L+L  N          +K   L  LNL  N L  ++
Sbjct: 34  DLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 68  PKEI-GNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
           P  +   LT LK + L  N+L   +P  +   L  L+DL L  N L  V       +++L
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 126 KVLMLINN 133
           + + L +N
Sbjct: 151 QYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 30  KALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGN-LTMLKGIYLEYNKLH 88
             L L+ N           +   L QL L  N L  ++P  + N LT L  + L  N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 89  GEIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMST-LKVLMLINNSL 135
             +P+ +   L  L++L L  N L  + P  +F+  T LK L L  N L
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQSL-PDGVFDKLTQLKDLRLYQNQL 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           +++ ++ L N + +    + + +    L+ L L        + S L K  +L++L L  N
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSEN 81

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMN 109
            + G +      L  L  + L  NKL        +  L  L+ L L   
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN 61
           S + ++ L N+R +    + +      L+ L          I + L K  +L++L L  N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDN 74

Query: 62  NLSGAIPKEIGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMN 109
            +SG +         L  + L  NK+        +  L NL+ L L   
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
             L       L K         +  +   +Q  N   +N+       +   T LK ++L 
Sbjct: 16  PGLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLS 71

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
           +N++  ++   + +L  LE+L +  N L  +        + L  L L NN L 
Sbjct: 72  HNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELR 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
            +LP L++L+L  N       + LS+  +L  L+L+ N +S  +P  +  LT L+ +YL 
Sbjct: 131 VHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135
            N +  ++   +A L NL+ L L     +        N+     +   + SL
Sbjct: 187 KNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 24  SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83
           + L  L  LFLD+N     + S+L   K+L+ L+L+ N +S      + +L  L+ +YL 
Sbjct: 87  ANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLG 142

Query: 84  YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136
            NK+       ++ L  L+ L L  N +  + P  +  ++ L+ L L  N +S
Sbjct: 143 NNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 18/141 (12%)

Query: 26  LPYLKALFLDKNMFHGKIPSAL--SKCKQLQQLNLQF---NNLSGAIPKEI------GNL 74
            P LK+L +        +   +  S    L++L L     +                   
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 75  TMLKGIYLEYNKLHGEIPHEIAN---LLNLEDLVLGMNIL----VGVFPAAIFNMSTLKV 127
             LK + +   +    +         L  LE + +   +L      +    +  +  LK 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 128 LMLINNSLSGSLPSRIDLSLP 148
           + +  N LS  +   +  SLP
Sbjct: 312 INMKYNYLSDEMKKELQKSLP 332

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 21  NIGSYLPYLKALFLDKNMFHGKIPS--ALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLK 78
           N+G+ L    A+    N    +I         ++L+ L +  N +          L  L 
Sbjct: 36  NLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91

Query: 79  GIYLEYNKLH--GEIPHEIANLLNLEDLVLGMN 109
            + L  N L   G++   +A+L +L  L +  N
Sbjct: 92  ELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 32  LFLDKNMFHGKIPSA--LSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHG 89
           L L+ N   G+I S     +   L +L L+ N L+G  P      + ++ + L  NK+  
Sbjct: 34  LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 90  EIPHEI-ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINN 133
           EI +++   L  L+ L L  N +  V P +  ++++L  L L +N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.89
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.83
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.81
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.73
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.41
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.52
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.59
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.53

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=2.7e-23  Score=137.71  Aligned_cols=152  Identities=24%  Similarity=0.243  Sum_probs=129.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+++.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus        35 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            35888999999998 55555555899999999999999977777788999999999999999866667788999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l  186 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITL  186 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEe
Confidence            9999998665666788999999999999999876667889999999999999999 555544488999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.5e-23  Score=138.54  Aligned_cols=152  Identities=28%  Similarity=0.319  Sum_probs=91.6

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .++..++..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus        61 ~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             TTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence            44555666666555 55555544556666666666666544344455566666666666666544445556666666666


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++..+..+..+++|+.+++.+|.++...+..+..+++|+.+++++|.++ .+|...+..+++|++|++
T Consensus       140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL  212 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEe
Confidence            6666666444444566666777777777666655555666677777777777776 555444466666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=2e-23  Score=142.44  Aligned_cols=150  Identities=27%  Similarity=0.445  Sum_probs=74.1

Q ss_pred             CCccEEEccC-CcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTN-NRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~-~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++|+.|++++ |.+.+.+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+....|..+..+++|+.|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            3445555552 444444444443 45555555555555544445555555555555555555544444555555555555


Q ss_pred             EeecccccccCchhhhCCC-CCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           81 YLEYNKLHGEIPHEIANLL-NLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      ++++|.+++..|..+..++ .|+.+++++|.+++..|..+..++ |+.+++++|.+++..|..+ ..+++|++|+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~  227 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF-GSDKNTQKIH  227 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC-CTTSCCSEEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH-hcCCCCCEEE
Confidence            5555555544555555554 555555555555444444444443 4444444444443333333 4445554444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=4.1e-23  Score=155.31  Aligned_cols=152  Identities=36%  Similarity=0.562  Sum_probs=97.7

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchh-----------
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE-----------   70 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-----------   70 (155)
                      ++|+.|++++|.+++.+|..+. .+++|++|++++|.+.+..|..+..+++|+.+++++|.+....|..           
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             CCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence            4455556666655544554444 4566666666666665555555666666666666665544333322           


Q ss_pred             -----------------------------------------------------------hhCCCcccEEEeecccccccC
Q 036127           71 -----------------------------------------------------------IGNLTMLKGIYLEYNKLHGEI   91 (155)
Q Consensus        71 -----------------------------------------------------------~~~~~~L~~L~l~~~~~~~~~   91 (155)
                                                                                 ++.+++|+.|++++|.+++..
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence                                                                       222345666777777777677


Q ss_pred             chhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           92 PHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        92 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      |..++.++.|+.+++++|.+++.+|..++.+++|+.|++++|.++|.+|..+ +.++.|++||+
T Consensus       649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~l  711 (768)
T 3rgz_A          649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDL  711 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG-GGCCCCSEEEC
T ss_pred             CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEEC
Confidence            7777777777777777777777777777777777777777777777777766 77777777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.4e-22  Score=135.78  Aligned_cols=151  Identities=24%  Similarity=0.259  Sum_probs=122.3

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .++ .+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        62 l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           62 LPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            467888999988888 443 344 78899999999999886666667888999999999998886666668888999999


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l  212 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL  212 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEc
Confidence            99999888666666788899999999999998876667788899999999999998 455444478888888875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=6.7e-23  Score=140.65  Aligned_cols=85  Identities=31%  Similarity=0.348  Sum_probs=35.9

Q ss_pred             chhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCC
Q 036127           68 PKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSL  147 (155)
Q Consensus        68 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~  147 (155)
                      |..++.+++|+.|++++|.++ .+|..+..+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+.+.+|..+ ..+
T Consensus       199 p~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l  276 (328)
T 4fcg_A          199 PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRL  276 (328)
T ss_dssp             CGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGC
T ss_pred             hHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh-hcC
Confidence            333444444444444444443 233334444444444444444443344444444444444444444433444433 444


Q ss_pred             Cccceec
Q 036127          148 PTVEVLD  154 (155)
Q Consensus       148 ~~L~~l~  154 (155)
                      ++|++|+
T Consensus       277 ~~L~~L~  283 (328)
T 4fcg_A          277 TQLEKLD  283 (328)
T ss_dssp             TTCCEEE
T ss_pred             CCCCEEe
Confidence            4444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2e-22  Score=134.80  Aligned_cols=152  Identities=26%  Similarity=0.305  Sum_probs=128.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus        37 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            35889999999998 67766555899999999999999855555578899999999999998866666788899999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEEC
Confidence            9999998776777888999999999999998866667889999999999999998 666654488999998875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1.5e-22  Score=136.27  Aligned_cols=130  Identities=27%  Similarity=0.310  Sum_probs=63.6

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL  104 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  104 (155)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.+
T Consensus       103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  182 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL  182 (285)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence            44444444444444443333344444455555555554443333334445555555555555543333334445555555


Q ss_pred             EeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++.+|.+++..|..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus       183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEEC
T ss_pred             ECCCCcccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEec
Confidence            55555555544555555555555555555555 333332255555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=6.4e-23  Score=140.75  Aligned_cols=151  Identities=21%  Similarity=0.255  Sum_probs=127.5

Q ss_pred             CCccEEEccCCcccccCCchhh--------cCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhC
Q 036127            2 SSISDIRLTNNRLSGELPKNIG--------SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGN   73 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~--------~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~   73 (155)
                      ++|+.|++++|.+.+.+|..+.        ..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. ..|..+..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~  227 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH  227 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence            4566666666655555665543        13677777777777777 67778888999999999999998 56677999


Q ss_pred             CCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127           74 LTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL  153 (155)
Q Consensus        74 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l  153 (155)
                      +++|+.|++++|.+.+..|..+..+++|+.+++.+|.+.+.+|..+..+++|+.+++++|.+.+.+|..+ +.+++|+.+
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~l  306 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCII  306 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCceEE
Confidence            9999999999999988999999999999999999999888899899999999999999999988999988 889999887


Q ss_pred             cC
Q 036127          154 DC  155 (155)
Q Consensus       154 ~l  155 (155)
                      ++
T Consensus       307 ~l  308 (328)
T 4fcg_A          307 LV  308 (328)
T ss_dssp             EC
T ss_pred             eC
Confidence            64

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1.9e-22  Score=135.78  Aligned_cols=151  Identities=23%  Similarity=0.239  Sum_probs=74.4

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCcc-ccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM-FHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      +|+.|++++|.++ .++...+..+++|++|++++|. +....+..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus        57 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           57 NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            4444444444444 2222222244455555555543 4433344444455555555555555433344445555555555


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+++..|..+ ..+++|+.|++
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l  208 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYL  208 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEEC
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc-cCcccccEeeC
Confidence            55555553333344555555555555555555444445555556666666665553334444 55566665553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=6.7e-23  Score=139.82  Aligned_cols=151  Identities=25%  Similarity=0.393  Sum_probs=81.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCC-cccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLT-MLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L   80 (155)
                      ++|+.|++++|.+++.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+....|..+..++ +|+.|
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L  179 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             CCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence            4566666666666545555444 566666666666666555555566666666666666655544455555554 55555


Q ss_pred             EeecccccccCchhh-----------------------hCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccC
Q 036127           81 YLEYNKLHGEIPHEI-----------------------ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG  137 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~-----------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (155)
                      ++++|.+++..|..+                       ..+++|+.+++.+|.+++..+ .+..+++|+++++++|.+++
T Consensus       180 ~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE
T ss_pred             ECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccC
Confidence            555555544444444                       444444444444444443222 23444555555555555555


Q ss_pred             CCCcccccCCCccceecC
Q 036127          138 SLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       138 ~~~~~~~~~~~~L~~l~l  155 (155)
                      .+|..+ ..+++|++|++
T Consensus       259 ~~p~~l-~~l~~L~~L~L  275 (313)
T 1ogq_A          259 TLPQGL-TQLKFLHSLNV  275 (313)
T ss_dssp             CCCGGG-GGCTTCCEEEC
T ss_pred             cCChHH-hcCcCCCEEEC
Confidence            555544 55555555553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1.5e-22  Score=152.27  Aligned_cols=152  Identities=34%  Similarity=0.539  Sum_probs=108.6

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.+++.+|..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+....|..+..+++|+.|+
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            3466677777776655665555 677777777777777766677777777777777777777666666777777777777


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++..|..+..+++|+.+++++|++++.+|..+..+++|+.+++++|.+++.+|..+ +.+++|++||+
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L  545 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDL  545 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEEC
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEEC
Confidence            77777776677777777777777777777776677777777777777777777776777666 66777777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.89  E-value=3.3e-22  Score=130.13  Aligned_cols=146  Identities=22%  Similarity=0.306  Sum_probs=100.3

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      +.++++++.++ .+|..+.   ++++.|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            45667777777 6666543   5677777777777755555677777777777777777655566777777777777777


Q ss_pred             ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      |.++...+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|+.|++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEe
Confidence            7777444444566777777777777777766667777777777777777777 444443366777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.88  E-value=6.9e-22  Score=128.63  Aligned_cols=146  Identities=21%  Similarity=0.322  Sum_probs=102.8

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      +.++++++.++ .+|..+.   +.++.|++++|.+++..+ ..|..+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            46777777777 6776543   456777777777775433 346677777788887777775555567777777777877


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+++..|..+ ..+++|+.|++
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  160 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSLSTLNL  160 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT-TTCTTCCEEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh-cCCCCCCEEEe
Confidence            777776656667777777777777777777666777777777788887777774445544 67777777764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.88  E-value=1.8e-21  Score=127.39  Aligned_cols=144  Identities=23%  Similarity=0.263  Sum_probs=76.4

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      +.++++++.++ .+|..+.   ++++.|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus        22 ~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            34555555555 5554332   5555555555555544455555555555566555555533334445555555555555


Q ss_pred             ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      |.+++..+..+..+++|+.|++++|.++. +|..+..+++|+.+++++|.++ .+|...+..+++|+.|+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEE
Confidence            55554333444555555555555555553 4445555555555555555555 44433335555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.6e-21  Score=129.13  Aligned_cols=148  Identities=23%  Similarity=0.241  Sum_probs=131.0

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +.+.++++++.++ .+|..+.   +.++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4678999999999 8887765   68999999999999777778999999999999999999777777899999999999


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|...+..+++|++|++
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L  162 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSL  162 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEEC
Confidence            999999766777889999999999999999877777899999999999999999 666644488999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.4e-21  Score=132.04  Aligned_cols=149  Identities=22%  Similarity=0.244  Sum_probs=72.6

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccc---------------------cCCccccCCCCCcEEEcccC
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG---------------------KIPSALSKCKQLQQLNLQFN   61 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~---------------------~~~~~~~~~~~L~~l~l~~~   61 (155)
                      +++.|++++|.++ .++...+..+++|+.|++++|.++.                     ..|..+..+++|+.|++++|
T Consensus        32 ~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           32 DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             TCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence            4555566666555 3333333245555555555555442                     33444444455555555555


Q ss_pred             cCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127           62 NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS  141 (155)
Q Consensus        62 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  141 (155)
                      .+....+..|..+++|+.|++++|.+++..+..+..+++|+.+++++|+++...+..+..+++|+.+++++|.++ .+|.
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~  189 (290)
T 1p9a_G          111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (290)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence            554333344555555555555555554333333444555555555555555433334445555555555555555 5554


Q ss_pred             ccccCCCccceec
Q 036127          142 RIDLSLPTVEVLD  154 (155)
Q Consensus       142 ~~~~~~~~L~~l~  154 (155)
                      .+ ...++|+.++
T Consensus       190 ~~-~~~~~L~~l~  201 (290)
T 1p9a_G          190 GF-FGSHLLPFAF  201 (290)
T ss_dssp             TT-TTTCCCSEEE
T ss_pred             hh-cccccCCeEE
Confidence            44 3344444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=7.8e-22  Score=134.01  Aligned_cols=152  Identities=16%  Similarity=0.177  Sum_probs=90.0

Q ss_pred             CCccEEEccCCcccccCCc-hhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccE
Q 036127            2 SSISDIRLTNNRLSGELPK-NIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKG   79 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~   79 (155)
                      ++|+.|++++|.++ .++. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..|..+..+++|+.
T Consensus       101 ~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          101 EQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             TTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            44555555555555 3332 223355666666666666554445555556666666666666543 24555666666666


Q ss_pred             EEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCC-ccceecC
Q 036127           80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP-TVEVLDC  155 (155)
Q Consensus        80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-~L~~l~l  155 (155)
                      |++++|.+++..|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+++..|..+ ..++ +|++|++
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L  255 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNL  255 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEEC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEc
Confidence            6666666665555666666666777776666666544556666677777777777665555544 5553 6666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.4e-21  Score=131.95  Aligned_cols=149  Identities=24%  Similarity=0.291  Sum_probs=93.8

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC---------------
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG---------------   65 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~---------------   65 (155)
                      +++++.++++++.++ .+|..+.   +.++.|++++|.+++..+..+..+++|+.|++++|.+..               
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L   84 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             cCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence            467899999999999 8887765   789999999999987667778777777777777776652               


Q ss_pred             ------CcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCC
Q 036127           66 ------AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSL  139 (155)
Q Consensus        66 ------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (155)
                            ..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.+++++|.++ .+
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  163 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL  163 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-cc
Confidence                  22223334444555555555554333344455555555555555555544444455555555555555555 44


Q ss_pred             CcccccCCCccceec
Q 036127          140 PSRIDLSLPTVEVLD  154 (155)
Q Consensus       140 ~~~~~~~~~~L~~l~  154 (155)
                      |..++..+++|++|+
T Consensus       164 ~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G          164 PAGLLNGLENLDTLL  178 (290)
T ss_dssp             CTTTTTTCTTCCEEE
T ss_pred             CHHHhcCcCCCCEEE
Confidence            444435555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=6.9e-22  Score=134.28  Aligned_cols=151  Identities=23%  Similarity=0.225  Sum_probs=112.5

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++|+.|++++|.++ .++..+. .+++|++|++++|.+++..+ ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        78 ~~L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           78 TSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             SCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             cccCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            45666777777666 5665554 67778888888877774433 457777888888888887775666667778888888


Q ss_pred             Eeecccccc-cCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++ ..|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++||+
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEEC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeEC
Confidence            888888765 46777788888888888888888876777888888888888888888 454433377888888875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.5e-21  Score=124.91  Aligned_cols=133  Identities=26%  Similarity=0.289  Sum_probs=83.8

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +++.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4666777777666 555555446667777777777666444444566667777777776666444444566667777777


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      ++|.+++..+..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            777666444444566667777777777666654445666666677766666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=2e-21  Score=126.42  Aligned_cols=134  Identities=22%  Similarity=0.237  Sum_probs=121.7

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .++...+..+++|+.|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            46899999999999 77776666899999999999999977788999999999999999999965566688999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      +++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++.
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            9999999887889999999999999999999977778999999999999999885

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=6.3e-21  Score=123.01  Aligned_cols=146  Identities=22%  Similarity=0.213  Sum_probs=125.3

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      +.++++++.++ .+|..+.   +++++|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            56788888888 7886654   6899999999999966666688999999999999999866566678999999999999


Q ss_pred             ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      |.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEe
Confidence            9998665666789999999999999999877777899999999999999999 666655588999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.87  E-value=1.9e-21  Score=124.57  Aligned_cols=144  Identities=18%  Similarity=0.240  Sum_probs=125.4

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .++ .+. .+++|++|++++|.++ . +..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            57899999999999 777 555 7999999999999776 3 34788899999999999999866788899999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCcc-ccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++..+..+..+++|+.+++++|. ++. ++ .+..+++|+.+++++|.++ .++ .+ ..+++|++|++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~-~~~-~l-~~l~~L~~L~l  188 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVH-DYR-GI-EDFPKLNQLYA  188 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCC-CCT-TG-GGCSSCCEEEE
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCc-ChH-Hh-ccCCCCCEEEe
Confidence            99999987788889999999999999998 666 55 6889999999999999998 666 44 78999998874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=3.5e-21  Score=125.31  Aligned_cols=136  Identities=22%  Similarity=0.239  Sum_probs=122.0

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      .++.|++++|.+++..+...+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            57899999999994435565668999999999999999777778999999999999999999777778999999999999


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGS  138 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (155)
                      ++|.+++..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.+...
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99999987788999999999999999999998888999999999999999998643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=2.4e-21  Score=138.75  Aligned_cols=151  Identities=25%  Similarity=0.265  Sum_probs=107.2

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+++.|++++|.++ .+++..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus        32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            35777888888887 55444444778888888888887766677777788888888888877744445567777888888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      +++|.+++..+..+..+++|+.+++.+|.++...+..+..+++|+.+++++|.++ .++...+..+++|+.|+
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~  182 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR  182 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEe
Confidence            8877777666667777777777777777777766666777777777777777776 45543335566666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=8.5e-21  Score=127.09  Aligned_cols=139  Identities=27%  Similarity=0.329  Sum_probs=122.0

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        84 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            468999999999999 7777766589999999999999996666678899999999999999986666678899999999


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      ++++|.+++..+..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+.+..|
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            999999997666778899999999999999999777778999999999999998875544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=1.4e-21  Score=139.07  Aligned_cols=128  Identities=26%  Similarity=0.215  Sum_probs=92.7

Q ss_pred             CCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEe
Q 036127           27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVL  106 (155)
Q Consensus        27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  106 (155)
                      ++++.+++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.+++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            46777777777777666666777777777777777777555666777777777777777777666667777777777777


Q ss_pred             eCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          107 GMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++|.+++..|..+..+++|+++++++|.++ .+|...+..+++|++|++
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEc
Confidence            777777766677777777777777777777 555544467777777764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=3.6e-21  Score=133.17  Aligned_cols=151  Identities=21%  Similarity=0.209  Sum_probs=116.9

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus        52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            46888899888888 66665555788899999998888866667788888899999988888854445578888888999


Q ss_pred             eecccccccCch--hhhCCCCCceEEeeCc-cccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPH--EIANLLNLEDLVLGMN-ILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~--~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.++. +|.  .+..+++|+++++++| .+....+..+..+++|+.+++++|.+++..|..+ ..+++|++|++
T Consensus       131 L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l  205 (353)
T 2z80_A          131 LLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLIL  205 (353)
T ss_dssp             CTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEE
T ss_pred             CCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-hccccCCeecC
Confidence            88888873 444  6777888888888888 4666556678888888888888888875556655 77777777753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=2e-20  Score=122.45  Aligned_cols=136  Identities=26%  Similarity=0.310  Sum_probs=119.3

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .+++..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            47899999999999 55555555899999999999999855556688999999999999999866666788999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSL  139 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (155)
                      +++|.++ .+|..+..+++|+++++++|.++...+..+..+++|+.+++++|++....
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9999998 78888999999999999999999876678899999999999999987443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=1.2e-20  Score=134.05  Aligned_cols=151  Identities=26%  Similarity=0.367  Sum_probs=101.6

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCC-------------------------CCcE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCK-------------------------QLQQ   55 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~-------------------------~L~~   55 (155)
                      +++|+.|++++|.++ .++...+..+++|++|++++|.+....+..|..++                         +|+.
T Consensus       111 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY  189 (440)
T ss_dssp             CSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred             CccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence            356777888888777 66665555677777777777776644443444444                         4555


Q ss_pred             EEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127           56 LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        56 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      |++++|.+. ..| .+..+++|+.|++++|.+++..|..+..+++|+.+++.+|.++...+..+..+++|+.+++++|.+
T Consensus       190 L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             EECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            555555444 222 245556666777777776655666777777777777777777776677777788888888888888


Q ss_pred             cCCCCcccccCCCccceecC
Q 036127          136 SGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       136 ~~~~~~~~~~~~~~L~~l~l  155 (155)
                      + .+|...+..+++|+.|++
T Consensus       268 ~-~~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          268 T-LLPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             C-CCCTTTTSSCTTCCEEEC
T ss_pred             C-ccChhHhccccCCCEEEc
Confidence            7 566555577788877764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=5.8e-21  Score=136.76  Aligned_cols=153  Identities=20%  Similarity=0.167  Sum_probs=119.3

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .+++..+..+++|++|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        55 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            467889999999888 4544444478899999999998885555567888899999999988876667778888889999


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++..+..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+. .++...+..+++|++|++
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEE
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeC
Confidence            99888888777778888888888888888888765566788888888888888887 444433377777777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=2.2e-21  Score=132.27  Aligned_cols=153  Identities=19%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             CCccEEEccCCcccccCCchhh-cCCCCccEEEccCccccccCCccccCC-----CCCcEEEcccCcCCCCcchhhhCCC
Q 036127            2 SSISDIRLTNNRLSGELPKNIG-SYLPYLKALFLDKNMFHGKIPSALSKC-----KQLQQLNLQFNNLSGAIPKEIGNLT   75 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~~~~   75 (155)
                      ++|+.|++++|.+++.+|..++ ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+....+..++.++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            4677777777777766666552 3677777777777777744 5555554     6777777777777655556666677


Q ss_pred             cccEEEeeccccccc--Cchhh--hCCCCCceEEeeCccccc---cCCccccCCCCCcEEEccCCcccCCCCcccccCCC
Q 036127           76 MLKGIYLEYNKLHGE--IPHEI--ANLLNLEDLVLGMNILVG---VFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP  148 (155)
Q Consensus        76 ~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  148 (155)
                      +|+.|++++|.+.+.  .+..+  ..+++|+++++++|.+++   .....+..+++|+.+++++|.+++..|...+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            777777777765433  22233  556666666666666652   11122344556666666666665434322224455


Q ss_pred             ccceecC
Q 036127          149 TVEVLDC  155 (155)
Q Consensus       149 ~L~~l~l  155 (155)
                      +|++|++
T Consensus       254 ~L~~L~L  260 (312)
T 1wwl_A          254 QLNSLNL  260 (312)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEC
Confidence            5555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=4.1e-21  Score=140.97  Aligned_cols=152  Identities=14%  Similarity=0.064  Sum_probs=92.8

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L   80 (155)
                      ++|+.|++++|.+++..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..|..++.+++|+.|
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            4455566666665533332333356666666666666655555556666666666666666553 245556666666666


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCC-ccceecC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP-TVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-~L~~l~l  155 (155)
                      ++++|.+++..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.++ .+|..+ ..++ +|+++++
T Consensus       479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~-~~l~~~L~~l~l  552 (606)
T 3vq2_A          479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL-QHFPKSLAFFNL  552 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG-GGSCTTCCEEEC
T ss_pred             ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH-hhhcccCcEEEc
Confidence            66666666555666666667777777777666655666666677777777777766 666554 5554 3666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=4.4e-21  Score=133.20  Aligned_cols=145  Identities=23%  Similarity=0.224  Sum_probs=90.5

Q ss_pred             CccEEEccCCcccccCCchhhc-CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGS-YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~-~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .++.|++++|.++ .++...+. .+++|+.|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus        40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3566777777766 55555543 566777777777776655555566667777777777776644445566667777777


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccc---cCCCCCcEEEccCCcccCCCCcccccCCCc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI---FNMSTLKVLMLINNSLSGSLPSRIDLSLPT  149 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  149 (155)
                      +++|.++...+..+..+++|+.|++++|.++...+..+   ..+++|+.|++++|.++ .+|...+..++.
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  188 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPA  188 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCH
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccH
Confidence            77777665556666666777777777777666433334   44666777777777776 555433344444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=4.7e-21  Score=140.64  Aligned_cols=151  Identities=21%  Similarity=0.181  Sum_probs=113.8

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++|+.|++++|.++ .+|..+. .+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+....|..+..+++|+.|
T Consensus       376 ~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          376 NSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             SCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            45666777777666 4554444 67777777777777775555 467777888888888888776667777788888888


Q ss_pred             Eeecccccc-cCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++ ..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.+++..|..+ +.+++|++||+
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l  528 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-NQLYSLSTLDC  528 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT-TTCTTCCEEEC
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc-cCCCcCCEEEC
Confidence            888888775 357777888888888888888888777778888888888888888885556666 77888888875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.2e-21  Score=125.82  Aligned_cols=147  Identities=16%  Similarity=0.246  Sum_probs=80.5

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCcc-ccccCCccccCCCCCcEEEccc-CcCCCCcchhhhCCCcccEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM-FHGKIPSALSKCKQLQQLNLQF-NNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++.|++++|.++ .++...+..+++|++|++++|. ++...+..|..+++|+.|++++ |.+....+..|..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4666666666666 5555444456666666666665 5544444566666666666665 66653334455566666666


Q ss_pred             EeecccccccCchhhhCCCCCc---eEEeeCc-cccccCCccccCCCCCc-EEEccCCcccCCCCcccccCCCccceec
Q 036127           81 YLEYNKLHGEIPHEIANLLNLE---DLVLGMN-ILVGVFPAAIFNMSTLK-VLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      ++++|.+++ +|. +..+++|+   .+++++| .++...+..+..+++|+ .+++++|.++ .+|...+.. ++|+.|+
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence            666665553 333 44444444   5555555 55544444455555555 5555555554 444433222 4444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=9.1e-21  Score=127.08  Aligned_cols=151  Identities=25%  Similarity=0.266  Sum_probs=73.1

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +|+.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus        53 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           53 ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             CCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            4445555555544 333333334455555555555544333344444455555555555444333333445555555555


Q ss_pred             eccccccc-CchhhhCCCCCceEEeeCccccccCCcccc---------------------------CCCCCcEEEccCCc
Q 036127           83 EYNKLHGE-IPHEIANLLNLEDLVLGMNILVGVFPAAIF---------------------------NMSTLKVLMLINNS  134 (155)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~---------------------------~~~~L~~l~l~~n~  134 (155)
                      ++|.+++. +|..+..+++|+++++++|.+++..+..+.                           ...+|+.+++++|.
T Consensus       132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ  211 (276)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred             cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence            55555432 345555555555555555554432222111                           11245666666666


Q ss_pred             ccCCCCcccccCCCccceecC
Q 036127          135 LSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       135 ~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++ .+|..++..+++|+.|++
T Consensus       212 l~-~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          212 LK-SVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             CS-CCCTTTTTTCCSCCEEEC
T ss_pred             ee-ecCHhHhcccccccEEEc
Confidence            66 444444456666666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=2.1e-20  Score=133.14  Aligned_cols=151  Identities=25%  Similarity=0.300  Sum_probs=105.5

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccC-------------------------CCCCcE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSK-------------------------CKQLQQ   55 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~-------------------------~~~L~~   55 (155)
                      +++|+.|++++|.++ .++...+..+++|++|++++|.++...+..+..                         +++|+.
T Consensus       122 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  200 (452)
T 3zyi_A          122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY  200 (452)
T ss_dssp             CTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred             cccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence            356788888888887 666666656778888888887776443334444                         445555


Q ss_pred             EEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127           56 LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        56 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      |++++|.+. ..| .+..+++|+.|++++|.+++..|..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+
T Consensus       201 L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          201 LNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             EECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            555555554 222 355566777777777777766677777788888888888888777777788888888888888888


Q ss_pred             cCCCCcccccCCCccceecC
Q 036127          136 SGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       136 ~~~~~~~~~~~~~~L~~l~l  155 (155)
                      + .+|...+..+++|+.|++
T Consensus       279 ~-~~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          279 S-SLPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             S-CCCTTSSTTCTTCCEEEC
T ss_pred             C-ccChHHhccccCCCEEEc
Confidence            8 666555577888887764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=1.9e-20  Score=125.52  Aligned_cols=139  Identities=24%  Similarity=0.282  Sum_probs=105.2

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC-cchhhhCCCcccE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA-IPKEIGNLTMLKG   79 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~   79 (155)
                      +++|+.|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .|..+..+++|+.
T Consensus        75 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           75 LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             CTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            357888999998888 55555444788888888888888855555677888888888888888743 4777888888888


Q ss_pred             EEeecccccccCchhhh---------------------------CCCCCceEEeeCccccccCCccccCCCCCcEEEccC
Q 036127           80 IYLEYNKLHGEIPHEIA---------------------------NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN  132 (155)
Q Consensus        80 L~l~~~~~~~~~~~~~~---------------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  132 (155)
                      |++++|.+++..+..+.                           ...+|+.+++++|.+++..+..+..+++|+.+++++
T Consensus       154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            88888877654333322                           122677888888888886666778899999999999


Q ss_pred             CcccCCCC
Q 036127          133 NSLSGSLP  140 (155)
Q Consensus       133 n~~~~~~~  140 (155)
                      |++....+
T Consensus       234 N~~~c~c~  241 (276)
T 2z62_A          234 NPWDCSCP  241 (276)
T ss_dssp             SCBCCCTT
T ss_pred             CcccccCC
Confidence            99985544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=133.34  Aligned_cols=153  Identities=18%  Similarity=0.183  Sum_probs=104.6

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|+.|
T Consensus        87 l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           87 LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             CSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            468999999999999 7776666689999999999999996666679999999999999998874444455556666666


Q ss_pred             Eeeccc-ccccCchhhh----------------------CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccC
Q 036127           81 YLEYNK-LHGEIPHEIA----------------------NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG  137 (155)
Q Consensus        81 ~l~~~~-~~~~~~~~~~----------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (155)
                      ++++|. +....+..+.                      .+++|+.|++++|.+++..+..+..+++|+.+++++|.++ 
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-  244 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-  244 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-
Confidence            665532 2211222333                      4455555555666665555566666666666666666666 


Q ss_pred             CCCcccccCCCccceecC
Q 036127          138 SLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       138 ~~~~~~~~~~~~L~~l~l  155 (155)
                      .++...+..+++|+.||+
T Consensus       245 ~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          245 VIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             EECTTSSTTCTTCCEEEC
T ss_pred             EEChhhhcCCCCCCEEEC
Confidence            333333366677776664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.8e-20  Score=130.14  Aligned_cols=146  Identities=25%  Similarity=0.263  Sum_probs=127.7

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCcccc-CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALS-KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      +.++++++.++ .+|..+.   +.++.|++++|.++...+..+. .+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            57899999999 8887655   5689999999999976666677 89999999999999986666789999999999999


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccc---cCCCccceecC
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRID---LSLPTVEVLDC  155 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~---~~~~~L~~l~l  155 (155)
                      +|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|..++   ..+++|++||+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEEC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEEC
Confidence            99998666777899999999999999999988889999999999999999999 7887765   46899999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.7e-21  Score=125.30  Aligned_cols=150  Identities=18%  Similarity=0.125  Sum_probs=109.0

Q ss_pred             CCCccEEEccCCc-ccccCCchhhcCCCCccEEEccC-ccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCccc
Q 036127            1 MSSISDIRLTNNR-LSGELPKNIGSYLPYLKALFLDK-NMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLK   78 (155)
Q Consensus         1 ~~~l~~l~l~~~~-~~~~~~~~~~~~l~~l~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   78 (155)
                      +++|+.|++++|. ++ .++...+..+++|++|++++ |.++...+..|..+++|+.|++++|.+.. .|. +..+++|+
T Consensus        54 l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~  130 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD  130 (239)
T ss_dssp             CTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred             CCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence            4678889999886 77 77776666788999999988 88886556678888889999888888773 554 66777777


Q ss_pred             ---EEEeecc-cccccCchhhhCCCCCc-eEEeeCccccccCCccccCCCCCcEEEccCCc-ccCCCCcccccCC-Cccc
Q 036127           79 ---GIYLEYN-KLHGEIPHEIANLLNLE-DLVLGMNILVGVFPAAIFNMSTLKVLMLINNS-LSGSLPSRIDLSL-PTVE  151 (155)
Q Consensus        79 ---~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~-~~L~  151 (155)
                         .+++++| .+++..+..+..+++|+ .+++++|.++...+..+.. ++|+.+++++|. ++ .+|...+..+ ++|+
T Consensus       131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPS  208 (239)
T ss_dssp             SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCC-EECTTTTTTCSBCCS
T ss_pred             cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcc-cCCHHHhhccccCCc
Confidence               8888888 77755555677777888 8888888777543334444 677777777774 76 5554444666 7777


Q ss_pred             eecC
Q 036127          152 VLDC  155 (155)
Q Consensus       152 ~l~l  155 (155)
                      .||+
T Consensus       209 ~L~l  212 (239)
T 2xwt_C          209 LLDV  212 (239)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=4.2e-21  Score=141.07  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=96.1

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +++.|++++|.++ .+++..+..+++|++|++++|.++...+.+|..+++|++|++++|.+....+..|..+++|++|++
T Consensus        53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            5677777777777 666665557777777777777777555566777777777777777776444556777777777777


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCcccccc-CCccccCCCCCcEEEccCCcccCCCC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGV-FPAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      ++|.+++..+..++.+++|++|++.+|.++.. .|..+..+++|+++++++|.+++..+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            77777754455567777777777777777653 45566677777777777777763333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=2.4e-20  Score=132.72  Aligned_cols=88  Identities=23%  Similarity=0.233  Sum_probs=59.8

Q ss_pred             cchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccC
Q 036127           67 IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLS  146 (155)
Q Consensus        67 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  146 (155)
                      .+..++.+++|+.|++++|.+++..|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+++..|..+ ..
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~  369 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF-LG  369 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT-TT
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc-cc
Confidence            34445566667777777777765556666677777777777777766666667777777777777777774445555 66


Q ss_pred             CCccceecC
Q 036127          147 LPTVEVLDC  155 (155)
Q Consensus       147 ~~~L~~l~l  155 (155)
                      +++|++|++
T Consensus       370 l~~L~~L~L  378 (455)
T 3v47_A          370 LPNLKELAL  378 (455)
T ss_dssp             CTTCCEEEC
T ss_pred             cccccEEEC
Confidence            777777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=2.9e-20  Score=130.11  Aligned_cols=148  Identities=19%  Similarity=0.204  Sum_probs=124.8

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+++.++++++.++ .+|..++..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..++.+++|+.|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            57889999999998 88888776899999999999999866667899999999999999999877777889999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      +++|.++...+..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.++ .++.   ..+++|+.++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~---~~l~~L~~L~  192 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHAN  192 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG---GGCTTCSEEE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc---ccccccceee
Confidence            9999998443444688999999999999999877778999999999999999998 4442   4455555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=2.4e-20  Score=132.85  Aligned_cols=151  Identities=19%  Similarity=0.230  Sum_probs=105.7

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|+.|
T Consensus        98 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            468999999999999 6666666589999999999999996666678899999999999999874444445555555555


Q ss_pred             Eeec-------------------------ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127           81 YLEY-------------------------NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        81 ~l~~-------------------------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      ++++                         |.+++ .| .+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence            5554                         44431 22 234455666666666666665566667777777777777777


Q ss_pred             cCCCCcccccCCCccceecC
Q 036127          136 SGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       136 ~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++..+..+ ..+++|+.||+
T Consensus       255 ~~~~~~~~-~~l~~L~~L~L  273 (452)
T 3zyi_A          255 SLIERNAF-DGLASLVELNL  273 (452)
T ss_dssp             CEECTTTT-TTCTTCCEEEC
T ss_pred             ceECHHHh-cCCCCCCEEEC
Confidence            63333333 66777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=2.2e-20  Score=137.32  Aligned_cols=145  Identities=21%  Similarity=0.179  Sum_probs=125.6

Q ss_pred             EEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc
Q 036127            6 DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN   85 (155)
Q Consensus         6 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   85 (155)
                      .+++++.+++ .+|..+.   +++++|++++|.++...+.+|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus        35 ~~~c~~~~l~-~vP~~lp---~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcC-ccCCCCC---cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            4677777888 8887654   58999999999999776778999999999999999998666778999999999999999


Q ss_pred             cccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccC-CCCcccccCCCccceecC
Q 036127           86 KLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG-SLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        86 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++..+..+..+++|++|++.+|++++..+..+.++++|++|++++|.++. ..|..+ +.+++|++|++
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L  180 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDL  180 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEEC
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh-ccchhhhhhcc
Confidence            9986666778999999999999999999777789999999999999999974 345555 88999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=1.1e-20  Score=137.31  Aligned_cols=151  Identities=20%  Similarity=0.203  Sum_probs=121.8

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .+++..+..+++|++|++++|.+++..+.+|..+++|++|++++|.+....+..++.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            46889999999998 55444444899999999999999877777888999999999999998866666788999999999


Q ss_pred             eecccccc-cCchhhhCCCCCceEEeeCcc-ccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           82 LEYNKLHG-EIPHEIANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        82 l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      +++|.+++ ..|..+..+++|+++++.+|. +....+..+..+++|+.+++++|.+++..|..+ +.+++|++|+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~  178 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLT  178 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh-hccccCceEe
Confidence            99998875 346678888999999999987 444444678888999999999999886677766 6677666664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=3.7e-21  Score=133.10  Aligned_cols=153  Identities=20%  Similarity=0.132  Sum_probs=124.1

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcc-hhhhCCCcccE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP-KEIGNLTMLKG   79 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~   79 (155)
                      +++|+.|++++|.++ .+++..+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+ ..+..+++|+.
T Consensus        75 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           75 CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence            467999999999998 5655544488999999999999985444458889999999999999884333 36888999999


Q ss_pred             EEeecc-cccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           80 IYLEYN-KLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        80 L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      |++++| .++...+..+..+++|+.+++++|.+++..|..+..+++|+++++++|.++ .+|..++..+++|+.|++
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL  229 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEE
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEEC
Confidence            999998 466555677888999999999999998877888888999999999999887 777666566788887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=7.5e-20  Score=125.47  Aligned_cols=147  Identities=22%  Similarity=0.295  Sum_probs=83.9

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccc--cCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG--KIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +|+.|++++|.++ .++...+..+++++.+++++|.+..  ..+..+..+++|+.+++++|.+. ..|..+.  ++|+.|
T Consensus       122 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L  197 (330)
T 1xku_A          122 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL  197 (330)
T ss_dssp             TCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEE
T ss_pred             cccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEE
Confidence            3444455555444 3444433356666666666665542  33445555666666666665554 2232221  455666


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .+|..+ ..+++|++|++
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l  270 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYL  270 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT-TTCSSCCEEEC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh-ccCCCcCEEEC
Confidence            66666665555566666666666777666666655555666666666666666666 666655 56666666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=5.1e-21  Score=141.40  Aligned_cols=133  Identities=21%  Similarity=0.336  Sum_probs=77.0

Q ss_pred             CCchhhcCCCCccEEEccCcccccc-----------------CCcccc--CCCCCcEEEcccCcCCCCcchhhhCCCccc
Q 036127           18 LPKNIGSYLPYLKALFLDKNMFHGK-----------------IPSALS--KCKQLQQLNLQFNNLSGAIPKEIGNLTMLK   78 (155)
Q Consensus        18 ~~~~~~~~l~~l~~l~l~~n~~~~~-----------------~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   78 (155)
                      +|..+. .+++|++|++++|.+++.                 .|..+.  .+++|+.|++++|.+....|..++.+++|+
T Consensus       198 ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            455444 566666666666666642                 555555  666666666666665555566666666666


Q ss_pred             EEEeeccc-ccc-cCchhhhCC------CCCceEEeeCccccccCCc--cccCCCCCcEEEccCCcccCCCCcccccCCC
Q 036127           79 GIYLEYNK-LHG-EIPHEIANL------LNLEDLVLGMNILVGVFPA--AIFNMSTLKVLMLINNSLSGSLPSRIDLSLP  148 (155)
Q Consensus        79 ~L~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  148 (155)
                      .|++++|. +++ .+|..++.+      ++|+++++++|.++ .+|.  .+..+++|+.+++++|.++|.+| .+ +.++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~  353 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEI  353 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCC
Confidence            66666665 554 455555444      56666666666655 3454  55556666666666666655555 33 4555


Q ss_pred             ccceec
Q 036127          149 TVEVLD  154 (155)
Q Consensus       149 ~L~~l~  154 (155)
                      +|++|+
T Consensus       354 ~L~~L~  359 (636)
T 4eco_A          354 KLASLN  359 (636)
T ss_dssp             EESEEE
T ss_pred             CCCEEE
Confidence            555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=9.4e-20  Score=127.56  Aligned_cols=110  Identities=19%  Similarity=0.207  Sum_probs=62.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus        69 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            45666666666666 44443333566666666666666644455555666666666666665533233345556666666


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCcccc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILV  112 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  112 (155)
                      +++|.+++..+..+..+++|+.+++.+|.++
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            6666655444444555555555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=8e-20  Score=134.19  Aligned_cols=85  Identities=21%  Similarity=0.221  Sum_probs=32.9

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL  104 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  104 (155)
                      .+++|+.|++++|.+++..+..|..+++|+.|++++|.+....+..|+.+++|+.|++++|.+++..|..+..+++|+.|
T Consensus        97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B           97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence            34444444444444443333333344444444444444432222223334444444444444433333333333333333


Q ss_pred             EeeCc
Q 036127          105 VLGMN  109 (155)
Q Consensus       105 ~l~~~  109 (155)
                      ++.+|
T Consensus       177 ~L~~N  181 (597)
T 3oja_B          177 QLSSN  181 (597)
T ss_dssp             ECTTS
T ss_pred             ECcCC
Confidence            33333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.84  E-value=6.5e-20  Score=116.97  Aligned_cols=132  Identities=22%  Similarity=0.299  Sum_probs=117.5

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCc-cccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      +.++++++.++ .+|..+.   .+++.|++++|.+++..+. .+..+++|+.|++++|.+....|..|..+++|+.|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67899999998 8998765   4899999999999855544 48899999999999999997778899999999999999


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      +|.+++..+..+..+++|+++++++|.+++..|..+..+++|+++++++|.+.+..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999997777788899999999999999999888899999999999999999875544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=2.8e-20  Score=136.53  Aligned_cols=150  Identities=21%  Similarity=0.187  Sum_probs=78.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCc-cccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++|+.|++++|.++ .+++..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus       376 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  454 (606)
T 3t6q_A          376 SHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL  454 (606)
T ss_dssp             TTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence            45666666666665 33323332556666666666665543332 25555566666666665554445555555555555


Q ss_pred             Eeeccccccc---CchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           81 YLEYNKLHGE---IPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        81 ~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      ++++|.+++.   .+..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.+++..|..+ ..++.| +|+
T Consensus       455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L-~L~  529 (606)
T 3t6q_A          455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL-SHLKGI-YLN  529 (606)
T ss_dssp             ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG-TTCCSC-EEE
T ss_pred             ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh-Cccccc-EEE
Confidence            5555555431   12334455555555555555555445555555555555555555553333333 444444 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=2.6e-20  Score=135.72  Aligned_cols=151  Identities=22%  Similarity=0.225  Sum_probs=113.1

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++|+.|++++|.++ .++..+. .+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus       373 ~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          373 TSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             SCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CccCEEECCCCccc-ccccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            45666777777666 4454433 67777777777777765444 356777888888888888776667777888888888


Q ss_pred             Eeeccccc-ccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLH-GEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.++ +..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.++ .+|...+..+++|+.|++
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC-CCCHHHhhcccCCcEEEe
Confidence            88888876 457777888888888888888888877778888888889999888888 444433378888888775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=6.9e-20  Score=134.50  Aligned_cols=148  Identities=19%  Similarity=0.204  Sum_probs=128.3

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+++.++++++.++ .+|..++..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|+.+++|+.|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            56789999999998 88988876899999999999999977777899999999999999999977777889999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      +++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.++ .++.   ..+++|+.|+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~---~~l~~L~~L~  198 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHAN  198 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG---GGCTTCSEEE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh---hhhhhhhhhh
Confidence            9999998554555789999999999999999988888999999999999999998 5542   4455555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=8.9e-20  Score=133.90  Aligned_cols=133  Identities=26%  Similarity=0.285  Sum_probs=64.4

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcc-hhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP-KEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L   80 (155)
                      ++|+.|++++|.++ .+|..+. .+++|++|++++|.+.+..+..+..+++|+.+++++|.+....+ ..+..+++|+.|
T Consensus       278 ~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          278 SGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            34555666666555 5555444 45566666666655554434444455555555555554432222 224444455555


Q ss_pred             EeecccccccC--chhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127           81 YLEYNKLHGEI--PHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        81 ~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      ++++|.+++..  +..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.++
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            55544444322  334444445555555555444444444444444444444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=7.3e-20  Score=135.95  Aligned_cols=153  Identities=25%  Similarity=0.239  Sum_probs=110.5

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|+.+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            35778888888887 56655554778888888888888766677777888888888888877744444677788888888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccc-cCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRID-LSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~L~~l~l  155 (155)
                      +++|.+++..+..+..+++|+++++.+|.+++..+..+..+++|+++++++|.+++..+..+. ..+++|++|++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL  178 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence            888887755566777788888888888887776666777778888888888877733333221 24566666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.83  E-value=9.2e-20  Score=113.86  Aligned_cols=136  Identities=20%  Similarity=0.154  Sum_probs=90.9

Q ss_pred             CCccEEEccCCccc-ccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLS-GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++++.|++++|.++ +.+|..+. .+++|+.|++++|.++..  ..+..+++|+.|++++|.+....|..+..+++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45677777777776 45655543 667777777777777633  556667777777777777765456666667777777


Q ss_pred             EeecccccccC-chhhhCCCCCceEEeeCccccccCC---ccccCCCCCcEEEccCCcccCCCCc
Q 036127           81 YLEYNKLHGEI-PHEIANLLNLEDLVLGMNILVGVFP---AAIFNMSTLKVLMLINNSLSGSLPS  141 (155)
Q Consensus        81 ~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~  141 (155)
                      ++++|.+++.. +..+..+++|+.+++++|.+++..+   ..+..+++|+++++++|.+. .+|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            77777776321 2566677777777777777766433   35667777777777777766 5554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.83  E-value=1.9e-19  Score=114.91  Aligned_cols=127  Identities=31%  Similarity=0.386  Sum_probs=114.3

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      +.++++++.++ .+|..+.   ++++.|++++|.++ .+|..+..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            56899999999 8887654   68999999999998 6778899999999999999999977777899999999999999


Q ss_pred             ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127           85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      |.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+++++|++.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            9999777778999999999999999999876677899999999999999885

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=8.9e-21  Score=140.11  Aligned_cols=150  Identities=23%  Similarity=0.333  Sum_probs=99.2

Q ss_pred             CCCccEEEccCCccccc-----------------CCchhh-cCCCCccEEEccCccccccCCccccCCCCCcEEEcccCc
Q 036127            1 MSSISDIRLTNNRLSGE-----------------LPKNIG-SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN   62 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~-----------------~~~~~~-~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~   62 (155)
                      +++|+.|++++|.+++.                 +|..+. ..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            35677778887777743                 666543 247777788887777777777777777777777777776


Q ss_pred             -CCC-CcchhhhCC------CcccEEEeecccccccCch--hhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccC
Q 036127           63 -LSG-AIPKEIGNL------TMLKGIYLEYNKLHGEIPH--EIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN  132 (155)
Q Consensus        63 -~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  132 (155)
                       +.. ..|..++.+      ++|+.|++++|.++ .+|.  .+..+++|+.+++.+|.+++.+| .+..+++|+.+++++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY  362 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence             654 456655554      67777777777776 6666  67777777777777777764455 555555566666666


Q ss_pred             CcccCCCCcccccCCCc-cceec
Q 036127          133 NSLSGSLPSRIDLSLPT-VEVLD  154 (155)
Q Consensus       133 n~~~~~~~~~~~~~~~~-L~~l~  154 (155)
                      |.++ .+|..+ ..+++ |++|+
T Consensus       363 N~l~-~lp~~l-~~l~~~L~~L~  383 (636)
T 4eco_A          363 NQIT-EIPANF-CGFTEQVENLS  383 (636)
T ss_dssp             SEEE-ECCTTS-EEECTTCCEEE
T ss_pred             Cccc-cccHhh-hhhcccCcEEE
Confidence            6555 555544 44555 55554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=1e-19  Score=131.51  Aligned_cols=149  Identities=25%  Similarity=0.291  Sum_probs=106.1

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccc--cCCccccCCCCCcEEEcccCcCCCCcch-hhhCCCccc
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG--KIPSALSKCKQLQQLNLQFNNLSGAIPK-EIGNLTMLK   78 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~L~   78 (155)
                      ++|+.|++++|.+++.+|..+. .+++|+.|++++|.+++  ..|..+..+++|+.|++++|.+....|. .+..+++|+
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            4677777777777754555554 67777777777777764  3345566777777777777777653443 366677777


Q ss_pred             EEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           79 GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        79 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      .|++++|.+++..|..+.  ++|+.+++++|.++. +|..+..+++|+.+++++|.++ .+|...+..+++|++|++
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence            777777777655555442  678888888888875 6666668888999999999888 777764478888888875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.1e-19  Score=124.86  Aligned_cols=75  Identities=25%  Similarity=0.281  Sum_probs=39.9

Q ss_pred             EEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           79 GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        79 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      .|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .+|..+ ..+++|++|++
T Consensus       197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l  271 (332)
T 2ft3_A          197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYL  271 (332)
T ss_dssp             CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTTCCEEEC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCccCCEEEC
Confidence            3333333333333344445555556666666555544445555666666666666665 555554 55666665553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=3.1e-19  Score=132.58  Aligned_cols=153  Identities=21%  Similarity=0.194  Sum_probs=80.2

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCcccccc--------------------------CCccccCCCCCcE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGK--------------------------IPSALSKCKQLQQ   55 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~--------------------------~~~~~~~~~~L~~   55 (155)
                      ++|+.|++++|.+++.++...+..+++++++++++|.+...                          .|..+..+++|+.
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            34555555555555444433333555555555555554332                          2333444455555


Q ss_pred             EEcccCcCCCCcchhhhCCCcccEEEeecccccccCc--------hhhhCCCCCceEEeeCccccccCCccccCCCCCcE
Q 036127           56 LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIP--------HEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKV  127 (155)
Q Consensus        56 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  127 (155)
                      |++++|.+....+..+..+++|+.|++++|.+++..+        ..+..+++|+.+++++|.++...+..+..+++|+.
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            5555555543333445555555555555555542211        11344555666666666555433345666666666


Q ss_pred             EEccCCcccCCCCcccccCCCccceecC
Q 036127          128 LMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       128 l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++++|.++ .+|...+..+++|+.|++
T Consensus       565 L~Ls~N~l~-~l~~~~~~~l~~L~~L~L  591 (680)
T 1ziw_A          565 IDLGLNNLN-TLPASVFNNQVSLKSLNL  591 (680)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             eECCCCCCC-cCCHhHhCCCCCCCEEEC
Confidence            666666666 555554466666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=4.6e-19  Score=119.75  Aligned_cols=140  Identities=29%  Similarity=0.487  Sum_probs=93.9

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .++. +. .+++|+.|++++|.++. . ..+..+++|+.|++++|.+.. . ..+..+++|+.|+
T Consensus        68 ~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A           68 PNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY  140 (291)
T ss_dssp             TTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred             CCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence            55667777777776 4444 33 66777777777777663 2 236667777777777777663 2 3466677777777


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++.  ..+..+++|+.+++++|.+++..+  +..+++|+.+++++|.++ .++. + ..+++|+.|++
T Consensus       141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~~-l-~~l~~L~~L~l  207 (291)
T 1h6t_A          141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-L-AGLKNLDVLEL  207 (291)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEEE
T ss_pred             ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC-CChh-h-ccCCCCCEEEC
Confidence            777777643  556677777777777777776433  677777888888888777 5554 3 67777777763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=6.5e-20  Score=133.63  Aligned_cols=146  Identities=20%  Similarity=0.191  Sum_probs=100.6

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +++.|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+....+..|+.+++|++|++
T Consensus        29 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            5677788888777 555544447778888888888777555666777778888888887776555567777777888888


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccc-cCCccccCCCCCcEEEccCCcccCCCCcccccCCCcc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVG-VFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTV  150 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L  150 (155)
                      ++|.+++..+..++.+++|+++++++|.+++ .+|..+..+++|+++++++|.+++..+..+ +.+++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L  175 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQM  175 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhcc
Confidence            7777764434456777777788777777765 246677777777777777777763333333 444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=9.4e-20  Score=124.20  Aligned_cols=147  Identities=20%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             CCccEEEccCCcccccCCchhhcCC-----CCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC--cchhh--h
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYL-----PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA--IPKEI--G   72 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l-----~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~--~   72 (155)
                      ++|+.|++++|.++ .+|..+. .+     ++|++|++++|.+.+..+..+..+++|+.|++++|.+...  .+..+  .
T Consensus       121 ~~L~~L~Ls~N~l~-~~~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          121 PDLNILNLRNVSWA-TRDAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             CCCSEEEEESCBCS-SSSSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCccEEEccCCCCc-chhHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            45666777777666 3344333 33     6666666666666655555666666666666666664321  12222  4


Q ss_pred             CCCcccEEEeecccccc--cCc-hhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCcccccCCC
Q 036127           73 NLTMLKGIYLEYNKLHG--EIP-HEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP  148 (155)
Q Consensus        73 ~~~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  148 (155)
                      .+++|+.|++++|.+++  ..+ ..+..+++|+.+++++|.+++..| ..+..+++|+++++++|.++ .+|..+ .  +
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~-~--~  274 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-P--A  274 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC-C--S
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc-c--C
Confidence            55666666666665552  111 122344556666666665555432 23334455555555555555 555444 1  4


Q ss_pred             ccceec
Q 036127          149 TVEVLD  154 (155)
Q Consensus       149 ~L~~l~  154 (155)
                      +|++||
T Consensus       275 ~L~~L~  280 (312)
T 1wwl_A          275 KLSVLD  280 (312)
T ss_dssp             EEEEEE
T ss_pred             CceEEE
Confidence            444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=5.4e-20  Score=139.44  Aligned_cols=150  Identities=22%  Similarity=0.253  Sum_probs=116.7

Q ss_pred             CCCccEEEccCCcccc-----------------cCCchh-hcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCc
Q 036127            1 MSSISDIRLTNNRLSG-----------------ELPKNI-GSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN   62 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~-----------------~~~~~~-~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~   62 (155)
                      +++|+.|++++|.+++                 .+|..+ +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            4678888999888885                 277765 3468889999998888877888888888888899888887


Q ss_pred             -CCC-CcchhhhCCC-------cccEEEeecccccccCch--hhhCCCCCceEEeeCccccccCCccccCCCCCcEEEcc
Q 036127           63 -LSG-AIPKEIGNLT-------MLKGIYLEYNKLHGEIPH--EIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLI  131 (155)
Q Consensus        63 -~~~-~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  131 (155)
                       +.. ..|..++.++       +|+.|++++|.++ .+|.  .+..+++|+.|++++|.++ .+| .+..+++|+.|+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence             664 4566555544       8888888888888 7777  7888888888888888887 466 77778888888888


Q ss_pred             CCcccCCCCcccccCCCc-cceecC
Q 036127          132 NNSLSGSLPSRIDLSLPT-VEVLDC  155 (155)
Q Consensus       132 ~n~~~~~~~~~~~~~~~~-L~~l~l  155 (155)
                      +|.++ .+|..+ ..+++ |+.|++
T Consensus       604 ~N~l~-~lp~~l-~~l~~~L~~L~L  626 (876)
T 4ecn_A          604 YNQIE-EIPEDF-CAFTDQVEGLGF  626 (876)
T ss_dssp             SSCCS-CCCTTS-CEECTTCCEEEC
T ss_pred             CCccc-cchHHH-hhccccCCEEEC
Confidence            88887 777766 66777 777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=5.2e-20  Score=133.71  Aligned_cols=152  Identities=20%  Similarity=0.167  Sum_probs=113.2

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC-cchhhhCCCcccE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA-IPKEIGNLTMLKG   79 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~   79 (155)
                      +++|+.|++++|.++ .+++..+..+++|++|++++|.+++..+..+..+++|++|++++|.+... .+..++.+++|+.
T Consensus        49 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           49 CANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence            467899999999999 55555444899999999999999866666688999999999999988742 4567888999999


Q ss_pred             EEeecccccccCc-hhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           80 IYLEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        80 L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      |++++|...+..| ..+..+++|+++++.+|.+++..|..+..+++|+.+++++|.+. .+|..++..+++|++|+
T Consensus       128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~  202 (549)
T 2z81_A          128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLE  202 (549)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEE
T ss_pred             EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEE
Confidence            9999987433444 57888899999999999888877777766666666666555554 44443333445555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=8.3e-19  Score=120.27  Aligned_cols=131  Identities=21%  Similarity=0.274  Sum_probs=77.3

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+. ..|..+.  ++|+.|+
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            35677777777777 555544446778888888888777555677777777777777777766 3333222  4555566


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccc--cCCccccCCCCCcEEEccCCccc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVG--VFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      +++|.+++..+..+..+++|+.+++.+|.+..  ..+..+..+++|+.+++++|.++
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            65555554444445555555555555555532  23334444444444444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=1.3e-18  Score=118.45  Aligned_cols=124  Identities=23%  Similarity=0.409  Sum_probs=55.1

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .++. +. .+++|++|++++|.+++ . ..+..+++|+.|++++|.+.. .+. +..+++|+.|+
T Consensus        63 ~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  135 (308)
T 1h6u_A           63 NNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY  135 (308)
T ss_dssp             TTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence            34555555555555 3333 22 45555555555555542 2 234444555555555555442 221 44444455555


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      +++|.+++. +. +..+++|+.+++++|.+++. +. +..+++|+.+++++|.++
T Consensus       136 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          136 LDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC
Confidence            544444422 11 33444444444444444432 11 334444444444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=9.7e-20  Score=138.05  Aligned_cols=133  Identities=20%  Similarity=0.283  Sum_probs=118.6

Q ss_pred             CCchhhcCCCCccEEEccCccccc-----------------cCCcccc--CCCCCcEEEcccCcCCCCcchhhhCCCccc
Q 036127           18 LPKNIGSYLPYLKALFLDKNMFHG-----------------KIPSALS--KCKQLQQLNLQFNNLSGAIPKEIGNLTMLK   78 (155)
Q Consensus        18 ~~~~~~~~l~~l~~l~l~~n~~~~-----------------~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   78 (155)
                      +|..+. .+++|+.|++++|.+++                 .+|..+.  .+++|+.|++++|.+....|..++.+++|+
T Consensus       440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            777766 79999999999999996                 2788877  999999999999998888899999999999


Q ss_pred             EEEeeccc-ccc-cCchhhhCCC-------CCceEEeeCccccccCCc--cccCCCCCcEEEccCCcccCCCCcccccCC
Q 036127           79 GIYLEYNK-LHG-EIPHEIANLL-------NLEDLVLGMNILVGVFPA--AIFNMSTLKVLMLINNSLSGSLPSRIDLSL  147 (155)
Q Consensus        79 ~L~l~~~~-~~~-~~~~~~~~~~-------~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~  147 (155)
                      .|++++|. +++ .+|..+..++       +|+.|++++|.++ .+|.  .+..+++|+.|++++|.++ .+| .+ +.+
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~-~~L  594 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF-GTN  594 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC-CTT
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh-cCC
Confidence            99999998 887 7887776655       9999999999999 5787  8999999999999999999 999 55 889


Q ss_pred             CccceecC
Q 036127          148 PTVEVLDC  155 (155)
Q Consensus       148 ~~L~~l~l  155 (155)
                      ++|+.|++
T Consensus       595 ~~L~~L~L  602 (876)
T 4ecn_A          595 VKLTDLKL  602 (876)
T ss_dssp             SEESEEEC
T ss_pred             CcceEEEC
Confidence            99999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=3.4e-19  Score=129.99  Aligned_cols=149  Identities=19%  Similarity=0.246  Sum_probs=111.8

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCcccccc--CCccccCCCCCcEEEcccCcCCCCcc-hhhhCCCccc
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGK--IPSALSKCKQLQQLNLQFNNLSGAIP-KEIGNLTMLK   78 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~   78 (155)
                      ++|+.|++++|.+++.+|..+. .+++++.|++++|.+++.  .|..+..+++|+.|++++|.+....| ..+..+++|+
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            5678888888888855555554 788888888888887742  23456778888888888888775344 3466778888


Q ss_pred             EEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           79 GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        79 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      .|++++|.+++..|..+.  ++|+.+++++|.++. +|..+..+++|+.+++++|.++ .+|...+..+++|+++++
T Consensus       432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred             EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence            888888887755554432  688899999998886 5655668899999999999998 788774488888888875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.81  E-value=8.8e-19  Score=110.28  Aligned_cols=133  Identities=26%  Similarity=0.293  Sum_probs=113.7

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      .+.++++++.++ .+|..+.   ++++.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            467899999998 7886544   789999999999996656667889999999999999986656668899999999999


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      +|.+++..+..+..+++|+.+++.+|.+++..+..+..+++|+++++++|.+.+..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999996666667889999999999999998666667889999999999999985544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.80  E-value=2.2e-19  Score=110.02  Aligned_cols=128  Identities=23%  Similarity=0.262  Sum_probs=103.1

Q ss_pred             CCCCccEEEccCcccc-ccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCce
Q 036127           25 YLPYLKALFLDKNMFH-GKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLED  103 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  103 (155)
                      ..++++.+++++|.++ +..|..+..+++|+.|++++|.+...  ..++.+++|+.|++++|.+++..|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3467888999998887 56677778888999999999888744  66778889999999999988667777777889999


Q ss_pred             EEeeCcccccc-CCccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceecC
Q 036127          104 LVLGMNILVGV-FPAAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLDC  155 (155)
Q Consensus       104 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~l  155 (155)
                      +++++|.+++. .+..+..+++|+++++++|.++ ..|.   ..+..+++|++||+
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETT
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccC
Confidence            99999988773 2367888899999999999998 5554   33478899998875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=9.2e-19  Score=120.18  Aligned_cols=151  Identities=26%  Similarity=0.208  Sum_probs=78.6

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCC------------------
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS------------------   64 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~------------------   64 (155)
                      +++.|++++|.++ .+++..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.                  
T Consensus        55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n  133 (332)
T 2ft3_A           55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN  133 (332)
T ss_dssp             TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred             CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            4566666666666 444433335666666666666666544555666666666666666554                  


Q ss_pred             ---CCcchhhhCCCcccEEEeecccccc--cCchhhhCC--------------------CCCceEEeeCccccccCCccc
Q 036127           65 ---GAIPKEIGNLTMLKGIYLEYNKLHG--EIPHEIANL--------------------LNLEDLVLGMNILVGVFPAAI  119 (155)
Q Consensus        65 ---~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~--------------------~~L~~l~l~~~~~~~~~~~~~  119 (155)
                         ...+..+..+++|+.|++++|.++.  ..+..+..+                    ++|+.+++++|.+++..+..+
T Consensus       134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSS
T ss_pred             ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHh
Confidence               2222234444455555555444421  122222211                    234444444444444334455


Q ss_pred             cCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       120 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ..+++|+.+++++|.+++..+..+ ..+++|++|++
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  248 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHL  248 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEEC
T ss_pred             cCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEEC
Confidence            566666677777776663333333 66666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=8.2e-19  Score=112.24  Aligned_cols=129  Identities=19%  Similarity=0.273  Sum_probs=110.6

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .++ .+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        65 l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           65 AHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             CTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             CCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            468999999999876 544 444 79999999999999987678889999999999999999986678889999999999


Q ss_pred             Eeeccc-ccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127           81 YLEYNK-LHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        81 ~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      ++++|. ++ ..+ .+..+++|+.+++++|.+++ ++ .+..+++|+.+++++|.+.
T Consensus       142 ~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          142 DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            999998 65 455 68889999999999999988 44 7888999999999999986

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=6.4e-19  Score=133.82  Aligned_cols=141  Identities=18%  Similarity=0.184  Sum_probs=93.7

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccC-CccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKI-PSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++++.|++++|.++ .+++..+..+++|++|++++|...+.+ +.+|..+++|+.|++++|.+....|..|..+++|+.|
T Consensus        24 ~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            46777888888777 443333336777777777777433233 5567777777777777777765556777777777777


Q ss_pred             EeecccccccCchh--hhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCccc
Q 036127           81 YLEYNKLHGEIPHE--IANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPSRI  143 (155)
Q Consensus        81 ~l~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~  143 (155)
                      ++++|.+++..+..  +..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..+
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l  168 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL  168 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence            77777776544543  6677777777777777766443 456777777777777777764444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=2.3e-19  Score=136.22  Aligned_cols=142  Identities=23%  Similarity=0.217  Sum_probs=82.4

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchh--hhCCCcccE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE--IGNLTMLKG   79 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~L~~   79 (155)
                      ++|+.|++++|...+.+++..+..+++|++|++++|.+.+..|.+|..+++|+.|++++|.+....+..  ++.+++|+.
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            456666666664444554444445666666666666666555566666666666666666665433332  556666666


Q ss_pred             EEeecccccccCc-hhhhCCCCCceEEeeCccccccCCccccCC--CCCcEEEccCCcccCCCCccc
Q 036127           80 IYLEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVFPAAIFNM--STLKVLMLINNSLSGSLPSRI  143 (155)
Q Consensus        80 L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~L~~l~l~~n~~~~~~~~~~  143 (155)
                      |++++|.+++..+ ..++.+++|++|++++|.+++..+..+..+  ++|+.+++++|.+.+..|..+
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~  194 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW  194 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch
Confidence            6666666654333 345666666666666666655555555544  566666666666655444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.80  E-value=8.9e-19  Score=109.37  Aligned_cols=128  Identities=26%  Similarity=0.284  Sum_probs=110.9

Q ss_pred             CCCCccEEEccCcccc-ccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCce
Q 036127           25 YLPYLKALFLDKNMFH-GKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLED  103 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  103 (155)
                      ..++++.|++++|.++ +..|..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+++..|..+..+++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4578999999999997 56777788899999999999998854  67888999999999999999768888888999999


Q ss_pred             EEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceecC
Q 036127          104 LVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLDC  155 (155)
Q Consensus       104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~l  155 (155)
                      +++++|.+++... ..+..+++|+.+++++|.++ ..|.   ..+..+++|++|++
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETT
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecC
Confidence            9999999988432 67889999999999999999 6665   33488999999985

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=1.7e-18  Score=115.42  Aligned_cols=139  Identities=24%  Similarity=0.373  Sum_probs=108.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .++ .+. .+++|+.|++++|.+++ .+. +..+++|+.|++++|.+.. .+. +.. ++|+.|+
T Consensus        41 ~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~  112 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLF  112 (263)
T ss_dssp             TTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEE
T ss_pred             CcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEE
Confidence            57889999999888 676 444 78999999999999884 344 7888999999999998874 333 223 7888999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++ . ..+..+++|+.+++++|++++. + .+..+++|+.+++++|.++ .+ ..+ ..+++|++|++
T Consensus       113 L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~-~~-~~l-~~l~~L~~L~l  179 (263)
T 1xeu_A          113 LDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT-NT-GGL-TRLKKVNWIDL  179 (263)
T ss_dssp             CCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC-BC-TTS-TTCCCCCEEEE
T ss_pred             ccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc-ch-HHh-ccCCCCCEEeC
Confidence            99888874 3 3577888899999999988874 3 6778888999999999888 44 334 77888888764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=9.5e-19  Score=126.44  Aligned_cols=127  Identities=20%  Similarity=0.261  Sum_probs=103.2

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC--CcchhhhCCCcccEEEeecccccccCchh-hhCCCCC
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG--AIPKEIGNLTMLKGIYLEYNKLHGEIPHE-IANLLNL  101 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L  101 (155)
                      .++++++|++++|.+++..|..+..+++|+.|++++|.+..  ..|..+..+++|+.|++++|.+++.+|.. +..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            67888889999988887678888888899999999888874  34466788889999999999888646654 6677889


Q ss_pred             ceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          102 EDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       102 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +.+++++|.+++..+..+.  ++|+.+++++|.++ .+|..+ ..+++|++|++
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~-~~l~~L~~L~L  451 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV-VKLEALQELNV  451 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG-GGCTTCCEEEC
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh-hcCCCCCEEEC
Confidence            9999999988776655443  68999999999998 899888 58999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=2.6e-18  Score=116.90  Aligned_cols=141  Identities=21%  Similarity=0.337  Sum_probs=114.7

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .++ .+. .+++|++|++++|.+++ .+ .+..+++|+.|++++|.+... +. +..+++|+.|
T Consensus        84 l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L  156 (308)
T 1h6u_A           84 LTKITELELSGNPLK-NVS-AIA-GLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYL  156 (308)
T ss_dssp             CCSCCEEECCSCCCS-CCG-GGT-TCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCC-Cch-hhc-CCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEE
Confidence            468999999999998 555 344 78999999999999984 33 378899999999999998743 33 7888999999


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++ .+. +..+++|+.+++++|.+++..+  +..+++|+.+++++|.++ .++. + ..+++|++|++
T Consensus       157 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~-~~~~-l-~~l~~L~~L~l  224 (308)
T 1h6u_A          157 SIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLFIVTL  224 (308)
T ss_dssp             ECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCCEEEE
T ss_pred             EccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC-cccc-c-cCCCCCCEEEc
Confidence            999999874 333 7888999999999999887433  788899999999999998 5553 4 78899888864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.79  E-value=6.5e-19  Score=107.94  Aligned_cols=128  Identities=21%  Similarity=0.165  Sum_probs=110.4

Q ss_pred             CCccEEEccCCccc-ccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTNNRLS-GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++++.|++++|.++ +.+|..+. .+++++.|++++|.+++.  ..+..+++|+.|++++|.+....|..+..+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            46899999999998 67777555 799999999999999854  678889999999999999986678888889999999


Q ss_pred             Eeeccccccc-CchhhhCCCCCceEEeeCccccccCC---ccccCCCCCcEEEccC
Q 036127           81 YLEYNKLHGE-IPHEIANLLNLEDLVLGMNILVGVFP---AAIFNMSTLKVLMLIN  132 (155)
Q Consensus        81 ~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~  132 (155)
                      ++++|.+++. .+..+..+++|+.+++++|.+++..+   ..+..+++|+.+++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999853 34778899999999999999988655   4788899999998763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=5.2e-19  Score=120.42  Aligned_cols=145  Identities=20%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCcccccc--C--CccccCCCCCcEEEcccCcCCCCcch----hhhCC
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGK--I--PSALSKCKQLQQLNLQFNNLSGAIPK----EIGNL   74 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~   74 (155)
                      +|+.|++++|.++ .++...+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.+. ..+.    .++.+
T Consensus       146 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l  223 (310)
T 4glp_A          146 GLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG  223 (310)
T ss_dssp             CCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred             CCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence            4445555555554 33333222445555555555543210  0  111233444555555555543 2222    13445


Q ss_pred             CcccEEEeecccccccCchhhhCC---CCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127           75 TMLKGIYLEYNKLHGEIPHEIANL---LNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE  151 (155)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~  151 (155)
                      ++|+.|++++|.+++..|..+..+   ++|+++++++|.++. +|..+.  ++|+.+++++|.++ .+|. + ..+++|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~-~~~~-~-~~l~~L~  297 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLN-RAPQ-P-DELPEVD  297 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCC-SCCC-T-TSCCCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCC-CCch-h-hhCCCcc
Confidence            556666666666654445444444   456666666666653 343332  45666666666665 4333 2 4556666


Q ss_pred             eecC
Q 036127          152 VLDC  155 (155)
Q Consensus       152 ~l~l  155 (155)
                      .|++
T Consensus       298 ~L~L  301 (310)
T 4glp_A          298 NLTL  301 (310)
T ss_dssp             CEEC
T ss_pred             EEEC
Confidence            5553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=3.6e-18  Score=115.39  Aligned_cols=140  Identities=27%  Similarity=0.404  Sum_probs=119.7

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .++. +. .+++|++|++++|.+++. +. +..+++|+.|++++|.+.. . ..+..+++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred             CcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence            46899999999998 6654 44 799999999999999854 44 8899999999999999873 3 3488999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++.  ..+..+++|+.+++++|.+++.  ..+..+++|+.+++++|.++ .++. + ..+++|++|++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~~-l-~~l~~L~~L~L  185 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-L-AGLTKLQNLYL  185 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-G-TTCTTCCEEEC
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cchh-h-cCCCccCEEEC
Confidence            999999843  5678899999999999999884  57889999999999999999 5555 4 88999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=5.4e-18  Score=124.48  Aligned_cols=141  Identities=28%  Similarity=0.485  Sum_probs=107.0

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      |++|+.|++++|.++ .+++ +. .+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.. . ..+..+++|+.|
T Consensus        64 l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L  136 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL  136 (605)
T ss_dssp             CTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred             CCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence            467888888888887 5554 33 68888888888888773 33 57778888888888888773 2 447778888888


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.++ .+|. + ..+++|+.|++
T Consensus       137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~~-l-~~l~~L~~L~L  204 (605)
T 1m9s_A          137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-L-AGLKNLDVLEL  204 (605)
T ss_dssp             ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEEC
T ss_pred             ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CChH-H-ccCCCCCEEEc
Confidence            8888888743  567788888888888888877544  778888888888888887 5543 4 77888888775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.78  E-value=6e-19  Score=120.47  Aligned_cols=125  Identities=18%  Similarity=0.141  Sum_probs=81.4

Q ss_pred             CCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhh-hCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127           26 LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL  104 (155)
Q Consensus        26 l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  104 (155)
                      ++++++|++++|.+++..+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+++. +. ...+++|+.+
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence            4567777777777765545566666777777777777664444444 3566777777777776633 22 2236677777


Q ss_pred             EeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++. +..+..+++|+.+++++|.++ .+|..+ ..+++|+.|++
T Consensus       197 ~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~-~~l~~L~~L~l  244 (317)
T 3o53_A          197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDL  244 (317)
T ss_dssp             ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTC-CCCTTCCEEEC
T ss_pred             ECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHh-hcCCCCCEEEc
Confidence            7777777663 334666777777777777777 666655 66777777664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=6.4e-18  Score=116.49  Aligned_cols=141  Identities=22%  Similarity=0.306  Sum_probs=99.5

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +|+.+++++|.++ .++. + ..+++++.|++++|.++. .+. +..+++|+.|++++|.+...  ..+..+++|+.|++
T Consensus       200 ~L~~L~l~~n~l~-~~~~-~-~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          200 SLHYFTAYVNQIT-DITP-V-ANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV  272 (347)
T ss_dssp             TCCEEECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             ccceeecccCCCC-CCch-h-hcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEc
Confidence            3444555555444 2222 2 256777777777777763 333 66777888888888877632  45677788888888


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++|.+++.  ..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++. + ..+++|+.||+
T Consensus       273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~~L~l  340 (347)
T 4fmz_A          273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRP-L-ASLSKMDSADF  340 (347)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC-CCGG-G-GGCTTCSEESS
T ss_pred             cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc-cccC-h-hhhhccceeeh
Confidence            88887743  45677888888888888888777777888888999999999888 4444 4 77888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.78  E-value=1.2e-19  Score=123.87  Aligned_cols=148  Identities=22%  Similarity=0.175  Sum_probs=120.3

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccc-cCCCCCcEEEcccCcCCCCcchhhhCCCcccE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSAL-SKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKG   79 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   79 (155)
                      +++|+.|++++|.++ .+++..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.. .+. ...+++|+.
T Consensus       119 ~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~  195 (317)
T 3o53_A          119 GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKT  195 (317)
T ss_dssp             CSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCE
T ss_pred             cCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCE
Confidence            356888888888888 5555444478999999999999986666665 468999999999999873 333 335889999


Q ss_pred             EEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc-CCCCcccccCCCccceec
Q 036127           80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS-GSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~L~~l~  154 (155)
                      |++++|.++ .+|..+..+++|+.+++++|.++. +|..+..+++|+.+++++|.+. +.+|..+ ..+++|+.++
T Consensus       196 L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~-~~~~~L~~l~  268 (317)
T 3o53_A          196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVA  268 (317)
T ss_dssp             EECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHH-HTCHHHHHHH
T ss_pred             EECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHH-hccccceEEE
Confidence            999999998 456668889999999999999987 6777889999999999999998 5666555 7777777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=6.5e-19  Score=126.62  Aligned_cols=144  Identities=19%  Similarity=0.163  Sum_probs=97.0

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhh-CCCcccEEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIG-NLTMLKGIY   81 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~   81 (155)
                      +|+.|++++|.++ .++..   .+++|+.|++++|.+++..+..+..+++|+.|++++|.+....|..+. .+++|+.|+
T Consensus       100 ~L~~L~L~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          100 SIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             TCCEEECCSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CcCEEECcCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            3444444444444 22222   356777777777777766566677777788888888877755555554 577788888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++. +. ...+++|+.|++++|.+++.. ..+..+++|+.+++++|.++ .+|..+ ..+++|+.|++
T Consensus       176 Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~l-~~l~~L~~L~l  244 (487)
T 3oja_A          176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDL  244 (487)
T ss_dssp             CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTC-CCCTTCCEEEC
T ss_pred             cCCCccccc-cc-cccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCc-ccchhh-ccCCCCCEEEc
Confidence            888777643 22 234777888888888887743 34777788888888888887 577665 67777777764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.78  E-value=4.4e-19  Score=120.75  Aligned_cols=148  Identities=18%  Similarity=0.128  Sum_probs=72.9

Q ss_pred             CccEEEccCCcccccCCchhh-cCCCCccEEEccCccccccCC----ccccCCCCCcEEEcccCcCCCCcchhhhCCCcc
Q 036127            3 SISDIRLTNNRLSGELPKNIG-SYLPYLKALFLDKNMFHGKIP----SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTML   77 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   77 (155)
                      +|+.|++++|.+++..|..++ ..+++|++|++++|.+.+..+    ..+..+++|+.|++++|.+....+..++.+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            356666666666544444431 245555555555555543222    122334455555555555543334444455555


Q ss_pred             cEEEeecccccc---------------------------cCch----hhhCCCCCceEEeeCccccccCCccccCC---C
Q 036127           78 KGIYLEYNKLHG---------------------------EIPH----EIANLLNLEDLVLGMNILVGVFPAAIFNM---S  123 (155)
Q Consensus        78 ~~L~l~~~~~~~---------------------------~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---~  123 (155)
                      +.|++++|.+.+                           ..+.    .+..+++|+++++++|.+++..|..+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            555555554321                           1111    12344555556666655555444444443   4


Q ss_pred             CCcEEEccCCcccCCCCcccccCCCccceec
Q 036127          124 TLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       124 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      +|+++++++|.++ .+|..+.   ++|++||
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~  278 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGLP---AKLRVLD  278 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCCC---SCCSCEE
T ss_pred             cCCEEECCCCCCC-chhhhhc---CCCCEEE
Confidence            5666666666665 5555441   4555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.6e-18  Score=124.61  Aligned_cols=146  Identities=22%  Similarity=0.233  Sum_probs=88.8

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccC---------------------
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN---------------------   61 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~---------------------   61 (155)
                      +|+.|++++|.++ .+++..+..+++|++|++++|.+++..+  +..+++|+.|++++|                     
T Consensus        35 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           35 NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            6777777777777 4444444467777777777777664332  445555555554444                     


Q ss_pred             -------------------cCCCCcchhhhCCCcccEEEeecccccccCchhhh-CCCCCceEEeeCccccccCCccccC
Q 036127           62 -------------------NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA-NLLNLEDLVLGMNILVGVFPAAIFN  121 (155)
Q Consensus        62 -------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~  121 (155)
                                         .+....|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++. + ....
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~  189 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVV  189 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCC
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-cccc
Confidence                               33333344455566666666666666655555554 566666666666666654 2 2234


Q ss_pred             CCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          122 MSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       122 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|+.|++++|.++ .+|..+ ..+++|+.||+
T Consensus       190 l~~L~~L~Ls~N~l~-~~~~~~-~~l~~L~~L~L  221 (487)
T 3oja_A          190 FAKLKTLDLSSNKLA-FMGPEF-QSAAGVTWISL  221 (487)
T ss_dssp             CTTCCEEECCSSCCC-EECGGG-GGGTTCSEEEC
T ss_pred             CCCCCEEECCCCCCC-CCCHhH-cCCCCccEEEe
Confidence            677777777777777 455554 66777777764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=3e-18  Score=125.04  Aligned_cols=128  Identities=25%  Similarity=0.272  Sum_probs=106.4

Q ss_pred             cCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC--cchhhhCCCcccEEEeecccccccCch-hhhCCCC
Q 036127           24 SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA--IPKEIGNLTMLKGIYLEYNKLHGEIPH-EIANLLN  100 (155)
Q Consensus        24 ~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~  100 (155)
                      ..++++++|++++|.+++..+..+..+++|+.|++++|.+...  .|..+..+++|+.|++++|.+++..|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            3678899999999999877788888999999999999988742  245678889999999999999864554 4677889


Q ss_pred             CceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          101 LEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       101 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      |+.+++++|.+++..+..+.  ++|+.+++++|.++ .+|..+ ..+++|++|++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~-~~l~~L~~L~L  480 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV-THLQALQELNV  480 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT-TSSCCCSEEEC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh-cCCCCCCEEEC
Confidence            99999999998876554443  68999999999999 899888 58999999885

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=6.4e-18  Score=107.72  Aligned_cols=123  Identities=22%  Similarity=0.293  Sum_probs=107.5

Q ss_pred             ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcch-hhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127           29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPK-EIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG  107 (155)
Q Consensus        29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  107 (155)
                      .+.++++++.++ .+|..+..  +++.|++++|.+....+. .++.+++|+.|++++|.+++..|..+..+++|+.++++
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            478999999997 66765543  899999999999855443 48899999999999999998888999999999999999


Q ss_pred             CccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          108 MNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +|.+++..+..+..+++|+++++++|.+++..|..+ ..+++|++|++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  133 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNL  133 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEEC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh-hcCCCCCEEEe
Confidence            999999888889999999999999999996667666 88999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.5e-17  Score=106.14  Aligned_cols=122  Identities=22%  Similarity=0.314  Sum_probs=107.7

Q ss_pred             ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeC
Q 036127           29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM  108 (155)
Q Consensus        29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (155)
                      -++++++++.++ .+|..+.  ++++.|++++|.+. ..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus        12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            467899999998 6676543  58999999999998 6778899999999999999999977778899999999999999


Q ss_pred             ccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          109 NILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      |.++...+..+..+++|+.|++++|.++ .+|...+..+++|+.|++
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEe
Confidence            9999988888999999999999999999 777765588999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=2e-19  Score=123.52  Aligned_cols=151  Identities=17%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             CCccEEEccCCccccc-CCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccC-cCCCC-cchhhhCCCccc
Q 036127            2 SSISDIRLTNNRLSGE-LPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN-NLSGA-IPKEIGNLTMLK   78 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~-~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~   78 (155)
                      ++|+.|++++|.+++. ++..+. .+++|++|++++|.+++..+..+..+++|+.|++++| .+... .+..+..+++|+
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            3455555555554422 332222 4555555555555544334444444555555555555 23311 233344445555


Q ss_pred             EEEeecc-ccccc-CchhhhCCC-CCceEEeeCc--ccc-ccCCccccCCCCCcEEEccCCc-ccCCCCcccccCCCccc
Q 036127           79 GIYLEYN-KLHGE-IPHEIANLL-NLEDLVLGMN--ILV-GVFPAAIFNMSTLKVLMLINNS-LSGSLPSRIDLSLPTVE  151 (155)
Q Consensus        79 ~L~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~--~~~-~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~  151 (155)
                      .|++++| .+++. .+..+..++ +|+++++++|  .++ ..++..+..+++|+.+++++|. +++..+..+ ..+++|+
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~  250 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQ  250 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCC
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCC
Confidence            5555555 44322 233344444 4555555444  222 1123333344444444444444 332333333 3444444


Q ss_pred             eec
Q 036127          152 VLD  154 (155)
Q Consensus       152 ~l~  154 (155)
                      +|+
T Consensus       251 ~L~  253 (336)
T 2ast_B          251 HLS  253 (336)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.76  E-value=2e-17  Score=113.97  Aligned_cols=142  Identities=20%  Similarity=0.281  Sum_probs=92.9

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .++. +. .+++++.+++++|.+... +. +..+++|+.|++++|.+... +. +..+++|+.|+
T Consensus       177 ~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~  249 (347)
T 4fmz_A          177 TDLYSLSLNYNQIE-DISP-LA-SLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLE  249 (347)
T ss_dssp             TTCSEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred             CCCCEEEccCCccc-cccc-cc-CCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEE
Confidence            34555555555555 3333 22 455566666666655522 22 56667777777777777633 33 66777788888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+++.  ..+..+++|+.+++++|.+++.  ..+..+++|+.+++++|.+++..+..+ +.+++|++|++
T Consensus       250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L  318 (347)
T 4fmz_A          250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFL  318 (347)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEEC
T ss_pred             CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEc
Confidence            888777632  4566778888888888877763  356777888888888888875554545 77888888765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.75  E-value=5.2e-17  Score=116.11  Aligned_cols=139  Identities=27%  Similarity=0.362  Sum_probs=72.2

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +|+.|++++|.++ .+++ + ..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.... . +..+++|+.|++
T Consensus       244 ~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~L  316 (466)
T 1o6v_A          244 NLTDLDLANNQIS-NLAP-L-SGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDIS-P-ISNLKNLTYLTL  316 (466)
T ss_dssp             TCSEEECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCG-G-GGGCTTCSEEEC
T ss_pred             CCCEEECCCCccc-cchh-h-hcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCch-h-hcCCCCCCEEEC
Confidence            4444444444444 2222 2 2445555555555554422 22 444555555555555554221 1 445556666666


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++|.+++..|  +..+++|+.+++.+|.+++.  ..+..+++|+.+++++|.+++..|  + ..+++|+.|++
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l  382 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L-ANLTRITQLGL  382 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G-TTCTTCCEEEC
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h-hcCCCCCEEec
Confidence            6665553333  44556666666666665553  245566666666666666664443  3 56666666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.75  E-value=6.6e-18  Score=106.21  Aligned_cols=129  Identities=18%  Similarity=0.210  Sum_probs=80.5

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+++.|++++|.++ .++. +....++++.|++++|.+++.  ..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus        19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            45667777777776 5543 332334777777777776633  4566667777777777776633334446667777777


Q ss_pred             eecccccccCch--hhhCCCCCceEEeeCccccccCCc----cccCCCCCcEEEccCCccc
Q 036127           82 LEYNKLHGEIPH--EIANLLNLEDLVLGMNILVGVFPA----AIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        82 l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~n~~~  136 (155)
                      +++|.++ .+|.  .+..+++|+.+++++|.++. .|.    .+..+++|+.+++++|...
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777765 3444  56666777777777777665 333    3666677777777666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.2e-17  Score=121.32  Aligned_cols=140  Identities=27%  Similarity=0.412  Sum_probs=119.7

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+|+.|++++|.+. .++ .+. .+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.. . ..+..+++|+.|+
T Consensus        43 ~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~  115 (605)
T 1m9s_A           43 NSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLS  115 (605)
T ss_dssp             TTCCCCBCTTCCCC-CCT-TGG-GCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC-CCh-HHc-cCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEE
Confidence            57889999999998 666 344 799999999999999854 33 8899999999999999873 3 3688999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++|.+.+  ...+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.++ .++. + ..+++|+.|+|
T Consensus       116 Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~L  182 (605)
T 1m9s_A          116 LEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-L-AGLTKLQNLYL  182 (605)
T ss_dssp             CTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC-CCGG-G-TTCTTCCEEEC
T ss_pred             ecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC-Cchh-h-ccCCCCCEEEC
Confidence            99999984  35688899999999999999885  57889999999999999999 4444 4 88999999986

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=7.2e-17  Score=101.50  Aligned_cols=124  Identities=21%  Similarity=0.188  Sum_probs=105.5

Q ss_pred             CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127           28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG  107 (155)
Q Consensus        28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  107 (155)
                      ..+.++++++.++ ..|..+  .++++.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.++++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4578899999988 556543  3689999999999986656678899999999999999986656667899999999999


Q ss_pred             CccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          108 MNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +|.+++..+..+..+++|+++++++|.++ .+|..++..+++|++|++
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEe
Confidence            99999877777889999999999999999 777766588999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=1.8e-18  Score=118.70  Aligned_cols=153  Identities=20%  Similarity=0.285  Sum_probs=121.0

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCc-cccc-cCCccccCCCCCcEEEcccC-cCCCC-cchhhhCCC-
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKN-MFHG-KIPSALSKCKQLQQLNLQFN-NLSGA-IPKEIGNLT-   75 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~-~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-   75 (155)
                      +++|+.|++++|.+++..+..+. .+++|++|++++| .+++ ..+..+..+++|+.|++++| .+... .+..+..++ 
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            46899999999998866666666 6999999999999 5664 24555778999999999999 77643 466678899 


Q ss_pred             cccEEEeecc--ccc-ccCchhhhCCCCCceEEeeCcc-ccccCCccccCCCCCcEEEccCCc-ccCCCCcccccCCCcc
Q 036127           76 MLKGIYLEYN--KLH-GEIPHEIANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLMLINNS-LSGSLPSRIDLSLPTV  150 (155)
Q Consensus        76 ~L~~L~l~~~--~~~-~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L  150 (155)
                      +|+.|++++|  .++ ..++..+..+++|+.+++.+|. +++..+..+..+++|+.+++++|. +.......+ +.+++|
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L  274 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTL  274 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTC
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCC
Confidence            9999999999  444 3456777889999999999998 776667788899999999999995 332211234 779999


Q ss_pred             ceecC
Q 036127          151 EVLDC  155 (155)
Q Consensus       151 ~~l~l  155 (155)
                      +.|++
T Consensus       275 ~~L~l  279 (336)
T 2ast_B          275 KTLQV  279 (336)
T ss_dssp             CEEEC
T ss_pred             CEEec
Confidence            99875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.73  E-value=2.5e-17  Score=103.55  Aligned_cols=125  Identities=20%  Similarity=0.224  Sum_probs=104.6

Q ss_pred             CCCCccEEEccCccccccCCccccCC-CCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCce
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKC-KQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLED  103 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  103 (155)
                      .+++++.|++++|.++ ..+. +..+ ++|+.|++++|.+...  ..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            5789999999999998 4454 4444 4999999999998843  56888999999999999998554455588999999


Q ss_pred             EEeeCccccccCCc--cccCCCCCcEEEccCCcccCCCCcc---cccCCCccceecC
Q 036127          104 LVLGMNILVGVFPA--AIFNMSTLKVLMLINNSLSGSLPSR---IDLSLPTVEVLDC  155 (155)
Q Consensus       104 l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~~L~~l~l  155 (155)
                      +++++|.++. +|.  .+..+++|+.+++++|.++ .+|..   ++..+++|++||+
T Consensus        93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence            9999999977 454  7889999999999999998 77775   3388999999985

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.72  E-value=7.4e-20  Score=117.21  Aligned_cols=146  Identities=24%  Similarity=0.322  Sum_probs=115.1

Q ss_pred             CccEEEccCCcccccCCc------hhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCc
Q 036127            3 SISDIRLTNNRLSGELPK------NIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTM   76 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~------~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   76 (155)
                      .++.++++.+.+.+.+|.      .+. .++++++|++++|.++. .| .+..+++|+.|++++|.+. ..|..+..+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            345555666666655554      555 79999999999999984 56 7888999999999999988 66777777889


Q ss_pred             ccEEEeecccccccCchhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCc---------ccccC
Q 036127           77 LKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---------RIDLS  146 (155)
Q Consensus        77 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---------~~~~~  146 (155)
                      |+.|++++|.+++ +| .+..+++|+.+++++|.++...+ ..+..+++|+++++++|.+++..|.         .++..
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            9999999999984 44 67788999999999999987432 4688899999999999999755443         12377


Q ss_pred             CCccceec
Q 036127          147 LPTVEVLD  154 (155)
Q Consensus       147 ~~~L~~l~  154 (155)
                      +++|++||
T Consensus       173 l~~L~~Ld  180 (198)
T 1ds9_A          173 LPNLKKLD  180 (198)
T ss_dssp             CSSCSEEC
T ss_pred             CCCcEEEC
Confidence            88888886

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.72  E-value=2.9e-16  Score=112.25  Aligned_cols=120  Identities=30%  Similarity=0.411  Sum_probs=63.2

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL  104 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  104 (155)
                      .+++|+.|++++|.+.+..+  +..+++|+.|++++|.+... +. +..+++|+.|++++|.+++..+  +..+++|+.+
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            34445555555554442211  44455555555555555422 22 4455555566665555553222  4555666666


Q ss_pred             EeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++|.+++..+  +..+++|+.+++++|.++ .++ .+ +.+++|++|++
T Consensus       315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~l  360 (466)
T 1o6v_A          315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVS-SL-ANLTNINWLSA  360 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCCEEECCSSCCC-CCG-GG-TTCTTCCEEEC
T ss_pred             ECcCCcCCCchh--hccCccCCEeECCCCccC-Cch-hh-ccCCCCCEEeC
Confidence            666666655433  456666666666666666 332 23 56667666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=2e-18  Score=129.20  Aligned_cols=112  Identities=26%  Similarity=0.315  Sum_probs=63.9

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL  104 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  104 (155)
                      .++.|+.|++++|.+. .++..+..+++|+.|++++|.+. ..|..++.+++|+.|++++|.++ .+|..+..+++|++|
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            4555666666666655 44444445556666666666555 44555555666666666666655 445555555666666


Q ss_pred             EeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127          105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      ++++|.++. +|..+..+++|+.|++++|.+++.+|
T Consensus       299 ~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          299 YFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             ECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             ECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCCh
Confidence            666665553 44445555666666666665554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.1e-16  Score=105.32  Aligned_cols=128  Identities=20%  Similarity=0.286  Sum_probs=108.4

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .++. +. .+++|+.|++++|.+++ .+. +.. ++|+.|++++|.+.. . ..+..+++|+.|
T Consensus        62 l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L  133 (263)
T 1xeu_A           62 FTNLKELHLSHNQIS-DLSP-LK-DLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEIL  133 (263)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-CChh-hc-cCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEE
Confidence            468999999999999 6666 44 89999999999999984 443 233 899999999999984 3 358899999999


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS  141 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  141 (155)
                      ++++|.+++. + .+..+++|+.+++++|.+++.  ..+..+++|+.+++++|.++ ..|.
T Consensus       134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~-~~~~  189 (263)
T 1xeu_A          134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV-NEPV  189 (263)
T ss_dssp             ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE-CCCE
T ss_pred             ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc-CCcc
Confidence            9999999853 4 688899999999999999885  67889999999999999998 4454

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=1.8e-16  Score=115.81  Aligned_cols=122  Identities=25%  Similarity=0.278  Sum_probs=106.6

Q ss_pred             CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127           28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG  107 (155)
Q Consensus        28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  107 (155)
                      .++.|++++|.+++ +|. +..+++|+.|++++|.+. ..|..++.+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            58899999999984 565 889999999999999998 778899999999999999999985 66 88999999999999


Q ss_pred             CccccccC-CccccCCCCCcEEEccCCcccCCCCccc---ccCCCccceecC
Q 036127          108 MNILVGVF-PAAIFNMSTLKVLMLINNSLSGSLPSRI---DLSLPTVEVLDC  155 (155)
Q Consensus       108 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~~L~~l~l  155 (155)
                      +|.+++.. |..+..+++|+.+++++|.++ ..|..+   ...+|+|++||+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG-GSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCC-CCccHHHHHHHHCcccCccCC
Confidence            99999966 889999999999999999999 444322   245899999885

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=2.8e-17  Score=123.09  Aligned_cols=137  Identities=27%  Similarity=0.365  Sum_probs=98.6

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ..|+.|++++|.+. .+|..++ .+++|++|++++|.++ .+|..+..+++|+.|++++|.+. ..|..++.+++|+.|+
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            45777788888777 7777777 6778888888888777 66777777788888888888777 5677777777888888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCC-CCcEEEccCCcccCCCCccc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS-TLKVLMLINNSLSGSLPSRI  143 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~  143 (155)
                      +++|.++ .+|..++.+++|+.|++++|.+++.+|..+.... ....+++.+|.+++.+|..+
T Consensus       300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            8887776 6677777777888888888877776665554332 12235677777776666544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=7.9e-16  Score=109.86  Aligned_cols=117  Identities=21%  Similarity=0.224  Sum_probs=79.6

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .+| .+. .+++|++|++++|.+++ .+  +..+++|+.|++++|.+... +  ++.+++|+.|+
T Consensus        42 ~~L~~L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            56788888888888 555 444 67888888888888774 33  66777888888888877643 2  66777788888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINN  133 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n  133 (155)
                      +++|.+++ .+  +..+++|+.+++++|.+++. +  +..+++|+.+++++|
T Consensus       113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTC
T ss_pred             CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCC
Confidence            88877764 33  66677777777777776652 2  334444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=2.7e-18  Score=120.05  Aligned_cols=107  Identities=20%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             CCCCCcEEEcccCcCCCC-----cchhhhCCCcccEEEeeccccc----ccCchhhhCCCCCceEEeeCcccccc----C
Q 036127           49 KCKQLQQLNLQFNNLSGA-----IPKEIGNLTMLKGIYLEYNKLH----GEIPHEIANLLNLEDLVLGMNILVGV----F  115 (155)
Q Consensus        49 ~~~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~~~~----~  115 (155)
                      .+++|+.|++++|.+...     .+..+..+++|+.|++++|.++    ..+|..+..+++|+.|++++|.+++.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            344455555555544311     1113444555555555555553    23444455555555555555555442    2


Q ss_pred             Ccccc--CCCCCcEEEccCCcccC----CCCcccccCCCccceecC
Q 036127          116 PAAIF--NMSTLKVLMLINNSLSG----SLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       116 ~~~~~--~~~~L~~l~l~~n~~~~----~~~~~~~~~~~~L~~l~l  155 (155)
                      +..+.  .+++|+.+++++|.+++    .+|..++..+++|++|++
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence            23332  25556666666666653    255444344555555553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=5.8e-16  Score=112.97  Aligned_cols=130  Identities=28%  Similarity=0.354  Sum_probs=74.8

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +|+.|++++|.++ .+|. +.   .+|+.|++++|.+++ +|.   .+++|+.|++++|.+.. .|.   .+++|+.|++
T Consensus       101 ~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  167 (571)
T 3cvr_A          101 SLEYLDACDNRLS-TLPE-LP---ASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV  167 (571)
T ss_dssp             TCCEEECCSSCCS-CCCC-CC---TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-Ccch-hh---cCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence            4444455555444 2443 22   145555555555542 333   34556666666666552 333   3456666777


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCC-------cEEEccCCcccCCCCcccccCCCccceecC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL-------KVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++|.+++ +|. +.  ++|+.|++++|.++. +|. +..  +|       +.+++++|.++ .+|..+ ..+++|+.|++
T Consensus       168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l-~~l~~L~~L~L  237 (571)
T 3cvr_A          168 RNNQLTF-LPE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI-LSLDPTCTIIL  237 (571)
T ss_dssp             CSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGG-GGSCTTEEEEC
T ss_pred             CCCCCCC-cch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHH-hcCCCCCEEEe
Confidence            7766663 444 33  677777777777765 444 433  56       88888888887 788777 55888888775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.68  E-value=2e-17  Score=114.87  Aligned_cols=133  Identities=21%  Similarity=0.192  Sum_probs=70.9

Q ss_pred             CccEEEccCCcccccCCc----hhhcCCC-CccEEEccCccccccCCccccCC-----CCCcEEEcccCcCCCCcchh--
Q 036127            3 SISDIRLTNNRLSGELPK----NIGSYLP-YLKALFLDKNMFHGKIPSALSKC-----KQLQQLNLQFNNLSGAIPKE--   70 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~----~~~~~l~-~l~~l~l~~n~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~--   70 (155)
                      +|+.|++++|.++ ..+.    ..+..++ ++++|++++|.++...+..+..+     ++|+.|++++|.+....+..  
T Consensus        23 ~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            4667777777766 4443    2233555 67777777776664444444443     66667777666665443332  


Q ss_pred             --hhCC-CcccEEEeecccccccCchhhh----C-CCCCceEEeeCccccccC----CccccCCC-CCcEEEccCCccc
Q 036127           71 --IGNL-TMLKGIYLEYNKLHGEIPHEIA----N-LLNLEDLVLGMNILVGVF----PAAIFNMS-TLKVLMLINNSLS  136 (155)
Q Consensus        71 --~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~----~~~~~~~~-~L~~l~l~~n~~~  136 (155)
                        +... ++|+.|++++|.+++..+..+.    . ..+|+++++++|.+++..    +..+...+ +|+++++++|.++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence              2233 5666666666666544433322    2 245666666666555321    12223333 5555555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=1.2e-17  Score=116.83  Aligned_cols=17  Identities=35%  Similarity=0.422  Sum_probs=7.9

Q ss_pred             ccCCCCCcEEEccCCcc
Q 036127          119 IFNMSTLKVLMLINNSL  135 (155)
Q Consensus       119 ~~~~~~L~~l~l~~n~~  135 (155)
                      +..+++|+.|++++|.+
T Consensus       212 l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             GGGCTTCCEEECCSSCC
T ss_pred             hhcCCCccEEECcCCCC
Confidence            33444444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=1.6e-15  Score=108.23  Aligned_cols=136  Identities=20%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCc--------------
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI--------------   67 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------------   67 (155)
                      ++|+.|++++|.++ .++  +. .+++|++|++++|.+++ .+  +..+++|+.|++++|.+....              
T Consensus        85 ~~L~~L~Ls~N~l~-~~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~  157 (457)
T 3bz5_A           85 TNLTYLACDSNKLT-NLD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHL  157 (457)
T ss_dssp             TTCSEEECCSSCCS-CCC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTT
T ss_pred             CCCCEEECcCCCCc-eee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCC
Confidence            44555555555555 332  22 45555555555555542 22  444445555555544443210              


Q ss_pred             -----chhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcc
Q 036127           68 -----PKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSR  142 (155)
Q Consensus        68 -----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  142 (155)
                           .-.+..+++|+.|++++|.+++ +|  +..+++|+.+++++|.+++.   .+..+++|+.+++++|.++ .+|  
T Consensus       158 n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip--  228 (457)
T 3bz5_A          158 NKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--  228 (457)
T ss_dssp             CSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC--
T ss_pred             CCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-ccC--
Confidence                 0013344455555555555543 22  34445555555555555442   2444555555555555555 344  


Q ss_pred             cccCCCccceec
Q 036127          143 IDLSLPTVEVLD  154 (155)
Q Consensus       143 ~~~~~~~L~~l~  154 (155)
                      + ..+++|++|+
T Consensus       229 ~-~~l~~L~~L~  239 (457)
T 3bz5_A          229 V-TPLTQLTYFD  239 (457)
T ss_dssp             C-TTCTTCSEEE
T ss_pred             c-cccCCCCEEE
Confidence            2 4455555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=6.9e-16  Score=112.70  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=106.7

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      .|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.. .| .++.+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            4789999999999 6886 55 8999999999999999 788999999999999999999984 56 7899999999999


Q ss_pred             ecccccccC-chhhhCCCCCceEEeeCccccccCCc---cccCCCCCcEEEc
Q 036127           83 EYNKLHGEI-PHEIANLLNLEDLVLGMNILVGVFPA---AIFNMSTLKVLML  130 (155)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l  130 (155)
                      ++|.+++.. |..+..+++|+.+++++|++++.++.   .+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999765 89999999999999999999886542   2344788888864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=8.3e-16  Score=96.13  Aligned_cols=107  Identities=22%  Similarity=0.234  Sum_probs=87.5

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      .+.++++++.++ .+|..+.   ++++.|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            467889999888 7887654   788899999999986667778888999999999998886656667888899999999


Q ss_pred             cccccccCchhhhCCCCCceEEeeCcccccc
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGV  114 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  114 (155)
                      +|.+++..+..+..+++|+.+++.+|++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9988865556688888999999999887653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=4.6e-16  Score=107.57  Aligned_cols=151  Identities=20%  Similarity=0.168  Sum_probs=99.2

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcE-EEcccCcCCCCcchhhhCCCcccE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQ-LNLQFNNLSGAIPKEIGNLTMLKG   79 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~-l~l~~~~~~~~~~~~~~~~~~L~~   79 (155)
                      ++++.|++++|.++ .+|...+..+++|++|++++|.+.+.++ .+|..++++.. +.+..|.+....+..|..+++|+.
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            46788888888888 7888776678888888888888754444 45677776654 455567777555667778888888


Q ss_pred             EEeecccccccCchhhhCC--------------------------CCCceEEeeCccccccCCccccCCCCCcEEEccC-
Q 036127           80 IYLEYNKLHGEIPHEIANL--------------------------LNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN-  132 (155)
Q Consensus        80 L~l~~~~~~~~~~~~~~~~--------------------------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-  132 (155)
                      +++++|.++...+..+...                          ..++.+++++|.++.+.+ ......+++.+++.+ 
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTTC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-hhccccchhHHhhccC
Confidence            8888887654322222111                          235556666666665333 333345677777764 


Q ss_pred             CcccCCCCcccccCCCccceecC
Q 036127          133 NSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       133 n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      |.++ .+|..++..+++|++||+
T Consensus       188 n~l~-~i~~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          188 NNLE-ELPNDVFHGASGPVILDI  209 (350)
T ss_dssp             TTCC-CCCTTTTTTEECCSEEEC
T ss_pred             Cccc-CCCHHHhccCcccchhhc
Confidence            4555 777666577778887775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.66  E-value=1.6e-15  Score=94.82  Aligned_cols=107  Identities=22%  Similarity=0.216  Sum_probs=94.4

Q ss_pred             CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127           28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG  107 (155)
Q Consensus        28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  107 (155)
                      ..+.+++++|.++ .+|..+.  ++++.|++++|.+....+..|..+++|+.|++++|.+++..+..+..+++|++++++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4678999999998 5676553  789999999999997778889999999999999999996666677899999999999


Q ss_pred             CccccccCCccccCCCCCcEEEccCCcccC
Q 036127          108 MNILVGVFPAAIFNMSTLKVLMLINNSLSG  137 (155)
Q Consensus       108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (155)
                      +|++++..+..+..+++|+.+++++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999999777779999999999999999873

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=3.6e-17  Score=113.53  Aligned_cols=79  Identities=20%  Similarity=0.164  Sum_probs=35.4

Q ss_pred             cccEEEeecccccccCchhh----hCC-CCCceEEeeCcccccc----CCccccC-CCCCcEEEccCCcccCCCCc---c
Q 036127           76 MLKGIYLEYNKLHGEIPHEI----ANL-LNLEDLVLGMNILVGV----FPAAIFN-MSTLKVLMLINNSLSGSLPS---R  142 (155)
Q Consensus        76 ~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~~----~~~~~~~-~~~L~~l~l~~n~~~~~~~~---~  142 (155)
                      +|+.|++++|.+++..+..+    ... ++|+.+++++|.+++.    ++..+.. .++|+.+++++|.+++..+.   .
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            45555555555543333222    222 3555555555555442    1222322 23566666666665522221   1


Q ss_pred             cccCCCccceec
Q 036127          143 IDLSLPTVEVLD  154 (155)
Q Consensus       143 ~~~~~~~L~~l~  154 (155)
                      .+..+++|+.|+
T Consensus       248 ~~~~l~~L~~L~  259 (362)
T 3goz_A          248 LKDSLKHLQTVY  259 (362)
T ss_dssp             TTTTTTTCSEEE
T ss_pred             HHhcCCCccEEE
Confidence            123455555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=8.2e-16  Score=106.29  Aligned_cols=152  Identities=20%  Similarity=0.158  Sum_probs=113.1

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccE-EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchh---------
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKA-LFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE---------   70 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~-l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~---------   70 (155)
                      +++|+.|++++|.+.+.++..++..++++.. +.+.+|.+....+..|..+++|+.+++++|.+....+..         
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~  132 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL  132 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence            4689999999999875788887777888765 556668888666778888999999999888775322211         


Q ss_pred             ----------------hhCC-CcccEEEeecccccccCchhhhCCCCCceEEeeC-ccccccCCccccCCCCCcEEEccC
Q 036127           71 ----------------IGNL-TMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM-NILVGVFPAAIFNMSTLKVLMLIN  132 (155)
Q Consensus        71 ----------------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~  132 (155)
                                      |..+ ..++.|++++|.++ .++.......+++.+++.+ |.++...+.+|..+++|+.+++++
T Consensus       133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~  211 (350)
T 4ay9_X          133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  211 (350)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred             hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence                            2222 24677888888887 4455444556788999875 567665556789999999999999


Q ss_pred             CcccCCCCcccccCCCccceec
Q 036127          133 NSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       133 n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      |.++ .+|...+.++++|+.++
T Consensus       212 N~l~-~lp~~~~~~L~~L~~l~  232 (350)
T 4ay9_X          212 TRIH-SLPSYGLENLKKLRARS  232 (350)
T ss_dssp             SCCC-CCCSSSCTTCCEEECTT
T ss_pred             CCcC-ccChhhhccchHhhhcc
Confidence            9999 88887667787777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.65  E-value=3.5e-15  Score=93.65  Aligned_cols=105  Identities=25%  Similarity=0.245  Sum_probs=80.7

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      +.++++++.++ .+|..+.   ++++.|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            56788888887 7777654   7788888888888866677788888888888888888754445567788888888888


Q ss_pred             ccccccCchhhhCCCCCceEEeeCccccc
Q 036127           85 NKLHGEIPHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                      |.+++..+..+..+++|+.+++.+|.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            88875444457778888888888887765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.64  E-value=3e-15  Score=93.90  Aligned_cols=109  Identities=22%  Similarity=0.238  Sum_probs=93.2

Q ss_pred             ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeC
Q 036127           29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM  108 (155)
Q Consensus        29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (155)
                      -+.+++++|.++ .+|..+.  ++|+.|++++|.+....|..|..+++|+.|++++|.+++..+..+..+++|+.+++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            468899999997 6776654  7899999999999977788899999999999999999965555578899999999999


Q ss_pred             ccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127          109 NILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS  141 (155)
Q Consensus       109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  141 (155)
                      |.+++..+..+..+++|+.+++++|.+. ..+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD-CECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence            9999866667899999999999999987 4443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.63  E-value=7.7e-15  Score=107.09  Aligned_cols=95  Identities=27%  Similarity=0.352  Sum_probs=44.9

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +++.|++++|.++ .+|..++   ++++.|++++|.++ .+|   ..+++|+.|++++|.+.. .|. +..  +|+.|++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            4555666666655 3554432   45555555555555 333   234455555555555542 333 222  4455555


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                      ++|.+++ +|.   .+++|+.|++++|.+++
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence            5554442 332   23444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=3.6e-15  Score=102.26  Aligned_cols=149  Identities=15%  Similarity=0.120  Sum_probs=116.3

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCcccc--------------------------------
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALS--------------------------------   48 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~--------------------------------   48 (155)
                      |.+|+.+++.. .++ .++..+|..+++|+.+++.+|.+....+.+|.                                
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            46788888887 777 78888887888888888888764211111111                                


Q ss_pred             ----------------------------------------------CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127           49 ----------------------------------------------KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus        49 ----------------------------------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                                                                    .+++|+.+++++|.+.......|..+.+|+.+++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence                                                          2678899999988887666678889999999999


Q ss_pred             ecccccccCchhhhCCCCCc-eEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           83 EYNKLHGEIPHEIANLLNLE-DLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      ..| ++...+..+..+.+|+ .+++.. .++...+.+|.++++|+.+++.+|.++ .++...|.++++|+.+.
T Consensus       258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            887 6656677889999999 999988 677767789999999999999999998 77777778999998774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=2.2e-17  Score=117.57  Aligned_cols=79  Identities=22%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             cccEEEeeccccccc----CchhhhCCCCCceEEeeCccccccCCccccC-----CCCCcEEEccCCcccC----CCCcc
Q 036127           76 MLKGIYLEYNKLHGE----IPHEIANLLNLEDLVLGMNILVGVFPAAIFN-----MSTLKVLMLINNSLSG----SLPSR  142 (155)
Q Consensus        76 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~n~~~~----~~~~~  142 (155)
                      +|+.|++++|.+++.    ++..+..+++|+.+++++|.+++..+..+..     .++|+++++++|.+++    .+|..
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            444444444444322    2333344455555555555554432222221     3455556665555553    34443


Q ss_pred             cccCCCccceecC
Q 036127          143 IDLSLPTVEVLDC  155 (155)
Q Consensus       143 ~~~~~~~L~~l~l  155 (155)
                      + ..+++|++||+
T Consensus       394 l-~~~~~L~~L~l  405 (461)
T 1z7x_W          394 L-LANHSLRELDL  405 (461)
T ss_dssp             H-HHCCCCCEEEC
T ss_pred             H-HhCCCccEEEC
Confidence            3 44555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.61  E-value=1.6e-14  Score=103.12  Aligned_cols=112  Identities=26%  Similarity=0.350  Sum_probs=50.4

Q ss_pred             CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127           28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG  107 (155)
Q Consensus        28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  107 (155)
                      ++++|++++|.+++ .| .+..+++|+.+++++|.+.. .|..   ..+|+.|++++|.+++ +| .++.+++|+.++++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            45555555555542 33 34555555555555555442 2221   1245555555555442 23 34445555555555


Q ss_pred             CccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127          108 MNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      +|.+++ +|..   .++|+.+++++|.++ .+|. + +.+++|++|+
T Consensus       204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~-~~l~~L~~L~  243 (454)
T 1jl5_A          204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-L-QNLPFLTTIY  243 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-C-TTCTTCCEEE
T ss_pred             CCcCCc-CCCC---cCcccEEECcCCcCC-cccc-c-CCCCCCCEEE
Confidence            554443 2211   124444444444444 4442 2 4444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.60  E-value=2.4e-14  Score=105.54  Aligned_cols=71  Identities=25%  Similarity=0.373  Sum_probs=51.2

Q ss_pred             CcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127           75 TMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      ++|+.|++++|.+++ +|   ..+++|+.+++++|.++. +|.   .+++|+.+++++|.++ .+|..+ ..+++|+.|+
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l-~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGG-GGSCTTCEEE
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHH-hhccccCEEE
Confidence            456666666666653 34   345677777787777775 443   5678889999999988 888876 8889998887


Q ss_pred             C
Q 036127          155 C  155 (155)
Q Consensus       155 l  155 (155)
                      +
T Consensus       291 L  291 (622)
T 3g06_A          291 L  291 (622)
T ss_dssp             C
T ss_pred             e
Confidence            5

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=7e-17  Score=103.33  Aligned_cols=128  Identities=23%  Similarity=0.371  Sum_probs=107.0

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .+| .+. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.. .| .+..+++|+.|
T Consensus        47 l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           47 LKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred             CCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence            468999999999999 687 555 7999999999999998 677777778899999999999984 44 68889999999


Q ss_pred             EeecccccccCc-hhhhCCCCCceEEeeCccccccCCc----------cccCCCCCcEEEccCCccc
Q 036127           81 YLEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVFPA----------AIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        81 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~  136 (155)
                      ++++|.+++..+ ..+..+++|+++++.+|.+.+.+|.          .+..+++|+.++  ++.++
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999999984322 4788899999999999999776553          377889999987  67665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.59  E-value=3.8e-14  Score=101.14  Aligned_cols=123  Identities=32%  Similarity=0.518  Sum_probs=84.2

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .+| .+. .++++++|++++|.+++ .|..+   .+|+.|++++|.+.. .| .++.+++|+.|+
T Consensus       131 ~~L~~L~L~~n~l~-~lp-~~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC-CCT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC-CCc-ccC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            46788888888888 577 344 78889999999998873 45432   478888888888774 44 477777888888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      +++|.+++ +|..   .++|+.+++++|.++. +| .+..+++|+++++++|.++ .+|
T Consensus       202 l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~l~  253 (454)
T 1jl5_A          202 ADNNSLKK-LPDL---PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLK-TLP  253 (454)
T ss_dssp             CCSSCCSS-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCC
T ss_pred             CCCCcCCc-CCCC---cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCC-ccc
Confidence            88777763 3332   2466677777776663 44 3566666666666666666 444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.59  E-value=2.4e-16  Score=112.23  Aligned_cols=112  Identities=21%  Similarity=0.217  Sum_probs=48.5

Q ss_pred             CCccEEEccCCcccccCCchhhcCCC----CccEEEccCccccc----cCCccccCCCCCcEEEcccCcCCCCcchhhh-
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLP----YLKALFLDKNMFHG----KIPSALSKCKQLQQLNLQFNNLSGAIPKEIG-   72 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~----~l~~l~l~~n~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-   72 (155)
                      ++|+.|++++|.+++..+..+...++    ++++|++++|.++.    ..+..+..+++|+.|++++|.+....+..+. 
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  135 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  135 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence            34555555555544222222222233    35555555555442    2234444555555555555554322111111 


Q ss_pred             ----CCCcccEEEeecccccccC----chhhhCCCCCceEEeeCccccc
Q 036127           73 ----NLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        73 ----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                          ..++|+.|++++|.+++..    +..+..+++|+++++++|.++.
T Consensus       136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence                1234555555555444321    2333344555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=2.8e-14  Score=97.83  Aligned_cols=150  Identities=14%  Similarity=0.145  Sum_probs=104.8

Q ss_pred             CCCccEEEccCCcccc-------------------cCCchhhcC--------CCCccEEEccCccccccCCccccCCCCC
Q 036127            1 MSSISDIRLTNNRLSG-------------------ELPKNIGSY--------LPYLKALFLDKNMFHGKIPSALSKCKQL   53 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~-------------------~~~~~~~~~--------l~~l~~l~l~~n~~~~~~~~~~~~~~~L   53 (155)
                      +++|+.|++++|.+..                   .+|..+|..        +++|+.+.+.+ .++.....+|..|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            4679999999998871                   356677777        89999999999 7775667789999999


Q ss_pred             cEEEcccCcCCCCcchhhhC------------------------------------------------------------
Q 036127           54 QQLNLQFNNLSGAIPKEIGN------------------------------------------------------------   73 (155)
Q Consensus        54 ~~l~l~~~~~~~~~~~~~~~------------------------------------------------------------   73 (155)
                      +.++++.|.+....+..|..                                                            
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            99999988753222222221                                                            


Q ss_pred             ------------------CCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCc-EEEccCCc
Q 036127           74 ------------------LTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK-VLMLINNS  134 (155)
Q Consensus        74 ------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~n~  134 (155)
                                        +++|+.+++.+|.++...+..+..|.+|+.+++..| +....+.+|.++++|+ .+.+.+ .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                              456677777766666454556677777777777766 6665556777777777 777766 5


Q ss_pred             ccCCCCcccccCCCccceec
Q 036127          135 LSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       135 ~~~~~~~~~~~~~~~L~~l~  154 (155)
                      ++ .++...|.++++|+.++
T Consensus       285 l~-~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          285 VT-AIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CC-EECTTTTTTCTTEEEEE
T ss_pred             ce-EEchhhhhCCccCCEEE
Confidence            65 55555557777777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=2e-13  Score=100.66  Aligned_cols=94  Identities=20%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      ++.|+++++.++ .+|..+.   ++++.|++++|.++ .+|.   .+++|+.|++++|.+. ..|.   .+++|+.|+++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            556666666666 5665443   56666666666665 3333   3455666666666655 2333   44555555555


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccc
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                      +|.+++ +|.   .+++|+.|++.+|.++.
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~  135 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS  135 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc
Confidence            555542 222   23344444444444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.48  E-value=2.9e-13  Score=93.28  Aligned_cols=104  Identities=21%  Similarity=0.237  Sum_probs=83.2

Q ss_pred             EEEccCC-cccccCCchhhcCCCCccEEEccC-ccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127            6 DIRLTNN-RLSGELPKNIGSYLPYLKALFLDK-NMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE   83 (155)
Q Consensus         6 ~l~l~~~-~~~~~~~~~~~~~l~~l~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~   83 (155)
                      .++++++ .++ .+|. +. .+++|+.|++++ |.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4678887 888 7888 55 788899999986 88886666778889999999999999886667788889999999999


Q ss_pred             cccccccCchhhhCCCCCceEEeeCccccc
Q 036127           84 YNKLHGEIPHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                      +|.+++..+..+..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9998854444444444 8999999888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=2.8e-13  Score=93.41  Aligned_cols=103  Identities=19%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             EEEccCc-cccccCCccccCCCCCcEEEccc-CcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeC
Q 036127           31 ALFLDKN-MFHGKIPSALSKCKQLQQLNLQF-NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM  108 (155)
Q Consensus        31 ~l~l~~n-~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (155)
                      .++.+++ .++ .+|. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+++..|..+..+++|+.|++++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455665 565 4555 66666677777764 666644445566666677777777766655556666666777777777


Q ss_pred             ccccccCCccccCCCCCcEEEccCCccc
Q 036127          109 NILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus       109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      |++++..+..+..++ |+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            766664444444444 666776666664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.41  E-value=2.5e-14  Score=104.72  Aligned_cols=105  Identities=17%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             cCCCCCcEEEcccCc--CCCCcchhhh-CCCcccEEEeeccccccc-CchhhhCCCCCceEEeeCcccccc-CCccccCC
Q 036127           48 SKCKQLQQLNLQFNN--LSGAIPKEIG-NLTMLKGIYLEYNKLHGE-IPHEIANLLNLEDLVLGMNILVGV-FPAAIFNM  122 (155)
Q Consensus        48 ~~~~~L~~l~l~~~~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~  122 (155)
                      ..+++|+.|+++.+.  +.......+. .+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++. ++..+..+
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l  512 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL  512 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence            345556666654322  2222222222 356677777777766542 233445667777777777776543 23334556


Q ss_pred             CCCcEEEccCCcccCCCCcccccCCCccce
Q 036127          123 STLKVLMLINNSLSGSLPSRIDLSLPTVEV  152 (155)
Q Consensus       123 ~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~  152 (155)
                      ++|+.+++++|.+++..-..+...+|.+.+
T Consensus       513 ~~L~~L~ls~n~it~~~~~~l~~~~p~l~~  542 (592)
T 3ogk_B          513 PSLRYLWVQGYRASMTGQDLMQMARPYWNI  542 (592)
T ss_dssp             SSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred             CccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence            777777777777764433334345565543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.40  E-value=1.8e-13  Score=100.27  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=18.2

Q ss_pred             CccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127          116 PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       116 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      |..+..+++|++|++++|.+++.....+...+++|++|+
T Consensus       286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~  324 (592)
T 3ogk_B          286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE  324 (592)
T ss_dssp             GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence            333444555666666655544222222224455555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.39  E-value=3.2e-14  Score=99.08  Aligned_cols=86  Identities=23%  Similarity=0.203  Sum_probs=37.2

Q ss_pred             CCCcEEEcccCcCCCC----cchhhhCCCcccEEEeecccccccC----chhhhCCCCCceEEeeCcccccc----CCcc
Q 036127           51 KQLQQLNLQFNNLSGA----IPKEIGNLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVGV----FPAA  118 (155)
Q Consensus        51 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~----~~~~  118 (155)
                      ++|+.|++++|.++..    .+..+...++|+.|++++|.+++..    +..+...++|+.|++++|.++..    +...
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            4455555555544321    1122234445555555555543221    22333444555555555554432    1122


Q ss_pred             ccCCCCCcEEEccCCccc
Q 036127          119 IFNMSTLKVLMLINNSLS  136 (155)
Q Consensus       119 ~~~~~~L~~l~l~~n~~~  136 (155)
                      +...++|+++++++|.++
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            233445555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=1.4e-14  Score=100.96  Aligned_cols=154  Identities=19%  Similarity=0.168  Sum_probs=109.5

Q ss_pred             CCccEEEccCCcccccCCch----hhcCCCCccEEEccCccccccCCccc-cCCCCCcEEEcccCcCCCCcchhh-----
Q 036127            2 SSISDIRLTNNRLSGELPKN----IGSYLPYLKALFLDKNMFHGKIPSAL-SKCKQLQQLNLQFNNLSGAIPKEI-----   71 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~----~~~~l~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~-----   71 (155)
                      ++++.+++++|.+++.-...    +....++++.|++++|.++......+ ..+.+|+.|++++|.+.......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56899999999987422222    22223689999999999874333332 235689999999999874433333     


Q ss_pred             hCCCcccEEEeeccccccc----CchhhhCCCCCceEEeeCcccccc----CCccccCCCCCcEEEccCCcccCCCCccc
Q 036127           72 GNLTMLKGIYLEYNKLHGE----IPHEIANLLNLEDLVLGMNILVGV----FPAAIFNMSTLKVLMLINNSLSGSLPSRI  143 (155)
Q Consensus        72 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  143 (155)
                      ...++|+.|++++|.++..    ++..+...++|++|++++|.+++.    +...+...++|+.|++++|.+++.....+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2467899999999998643    344557789999999999998753    24556777899999999999984222222


Q ss_pred             c---cCCCccceecC
Q 036127          144 D---LSLPTVEVLDC  155 (155)
Q Consensus       144 ~---~~~~~L~~l~l  155 (155)
                      .   ...++|++||+
T Consensus       232 ~~~L~~~~~L~~L~L  246 (372)
T 3un9_A          232 ARAAREHPSLELLHL  246 (372)
T ss_dssp             HHHHHHCSSCCEEEC
T ss_pred             HHHHHhCCCCCEEec
Confidence            1   45688888875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.33  E-value=1.5e-11  Score=86.42  Aligned_cols=145  Identities=13%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      |.+|+.+++..|.++ .++...+ ..++++.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|.. .+|+.+
T Consensus       179 c~~L~~l~l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          179 CYNLKKADLSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV  253 (401)
T ss_dssp             CTTCCEEECTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred             cccCCeeecCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence            345666666666666 5565555 3456666666533 33344455666666776666553 22222333433 445555


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCcccc-----ccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILV-----GVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL  153 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l  153 (155)
                      .+. +.++......+..|++|+.+.+.++.+.     ...+.+|.++++|+.+.+. +.++ .++...|.++++|+.+
T Consensus       254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEE
T ss_pred             EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEE
Confidence            553 2333334455556666666666555433     2333455555566666555 2344 4444444555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.24  E-value=4e-13  Score=98.37  Aligned_cols=39  Identities=10%  Similarity=0.029  Sum_probs=16.7

Q ss_pred             CCCCceEEeeCccccccCCccc-cCCCCCcEEEccCCccc
Q 036127           98 LLNLEDLVLGMNILVGVFPAAI-FNMSTLKVLMLINNSLS  136 (155)
Q Consensus        98 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~  136 (155)
                      +++|+.+++++|.+++.....+ ..+++|+.+++++|.++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            4444444444444433222222 33444555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.22  E-value=6.8e-12  Score=91.89  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=17.4

Q ss_pred             CCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127          121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       121 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                      .+++|+.+++++|.+++.....+...+++|+.|+
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~  320 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW  320 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEe
Confidence            3456666666666654322222224555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.19  E-value=2.2e-10  Score=80.60  Aligned_cols=122  Identities=11%  Similarity=0.093  Sum_probs=73.3

Q ss_pred             CCccEEEccCccccccCCccccCCCCCcEEEcccCcCC-----CCcchhhhCCCcccEEEeecccccccCchhhhCCCCC
Q 036127           27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS-----GAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNL  101 (155)
Q Consensus        27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  101 (155)
                      ++|+.+.+.+ .++.....+|..|.+|+.+.+.++...     ......|..+++|+.+.+. +.++......+..|.+|
T Consensus       248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred             CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence            3444444422 233233455667777777777665543     2334566677777777776 34554555667777778


Q ss_pred             ceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCC-cccee
Q 036127          102 EDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP-TVEVL  153 (155)
Q Consensus       102 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-~L~~l  153 (155)
                      +.+.+..+ ++.....+|.++ +|+.+.+.+|... .++...|.+++ ++..+
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l  375 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVI  375 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEE
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEE
Confidence            87777544 656555677777 7888888887776 55544445553 34333

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=9e-10  Score=76.44  Aligned_cols=150  Identities=12%  Similarity=0.081  Sum_probs=89.8

Q ss_pred             CCccEEEccCCccc---------ccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhh
Q 036127            2 SSISDIRLTNNRLS---------GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIG   72 (155)
Q Consensus         2 ~~l~~l~l~~~~~~---------~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~   72 (155)
                      ++|+.|.+......         +.+.. +...+|+|+.|.++++.-. ..+. + .+++|+.|++..+.+.......+.
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            57888877554221         01222 3336789999999887411 2222 3 378899999988876533333333


Q ss_pred             --CCCcccEEEeec--cccccc-----Cchhh--hCCCCCceEEeeCccccccCCccc---cCCCCCcEEEccCCcccCC
Q 036127           73 --NLTMLKGIYLEY--NKLHGE-----IPHEI--ANLLNLEDLVLGMNILVGVFPAAI---FNMSTLKVLMLINNSLSGS  138 (155)
Q Consensus        73 --~~~~L~~L~l~~--~~~~~~-----~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~n~~~~~  138 (155)
                        .+++|+.|+++.  +...+.     +...+  ..+++|++|++.+|.+....+..+   ..+++|++|+++.|.+.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence              678899888853  211111     11122  246889999998888765332222   2467899999988888743


Q ss_pred             CCcccc---cCCCccceecC
Q 036127          139 LPSRID---LSLPTVEVLDC  155 (155)
Q Consensus       139 ~~~~~~---~~~~~L~~l~l  155 (155)
                      ....+.   ..+++|+.|++
T Consensus       295 G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEEC
T ss_pred             HHHHHHhhcccCCcceEEEC
Confidence            322221   34677777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=1.5e-09  Score=68.51  Aligned_cols=112  Identities=13%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             CCCCccEEEccCc-ccccc----CCccccCCCCCcEEEcccCcCCCCc----chhhhCCCcccEEEeeccccccc----C
Q 036127           25 YLPYLKALFLDKN-MFHGK----IPSALSKCKQLQQLNLQFNNLSGAI----PKEIGNLTMLKGIYLEYNKLHGE----I   91 (155)
Q Consensus        25 ~l~~l~~l~l~~n-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~   91 (155)
                      ..+.+++|++++| .+...    +...+...++|+.|++++|.+....    ...+...++|+.|++++|.+...    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            5788999999998 77632    2344566788999999999987432    23344567899999999988754    3


Q ss_pred             chhhhCCCCCceEEe--eCcccccc----CCccccCCCCCcEEEccCCccc
Q 036127           92 PHEIANLLNLEDLVL--GMNILVGV----FPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        92 ~~~~~~~~~L~~l~l--~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      ...+...+.|+++++  ++|.++..    +...+...++|+.+++++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            455666788999999  88888753    2344556688999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=9e-09  Score=71.45  Aligned_cols=132  Identities=15%  Similarity=0.140  Sum_probs=88.7

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCcccc--CCCCCcEEEcccC--cC-CCC----cchhh
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALS--KCKQLQQLNLQFN--NL-SGA----IPKEI   71 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~--~~~~L~~l~l~~~--~~-~~~----~~~~~   71 (155)
                      +++|+.|.++++.-. .++.  . .+++|+.|++..+.+.......+.  .+++|+.|++..+  .. ...    ....+
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             CCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            468999999887322 3443  2 378999999998877633333333  6789999998531  11 110    11112


Q ss_pred             --hCCCcccEEEeecccccccCchhhh---CCCCCceEEeeCccccccC----CccccCCCCCcEEEccCCccc
Q 036127           72 --GNLTMLKGIYLEYNKLHGEIPHEIA---NLLNLEDLVLGMNILVGVF----PAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        72 --~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~  136 (155)
                        ..+++|+.|++.+|.+.+..+..+.   .+++|++|+++.|.+++..    +..+..+++|+.+++++|.++
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence              2478999999999887644443433   4678999999999887632    223345689999999999887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.74  E-value=1.1e-08  Score=68.11  Aligned_cols=81  Identities=27%  Similarity=0.268  Sum_probs=56.6

Q ss_pred             CCCcccEEEeecccccc--cCchhhhCCCCCceEEeeCccccccC-CccccCCCCCcEEEccCCcccCCCCc------cc
Q 036127           73 NLTMLKGIYLEYNKLHG--EIPHEIANLLNLEDLVLGMNILVGVF-PAAIFNMSTLKVLMLINNSLSGSLPS------RI  143 (155)
Q Consensus        73 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~------~~  143 (155)
                      .+++|+.|++++|.+++  .++..+..+++|+.|++++|.+++.. ...+..+ +|+.|++.+|++++..|.      .+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            46788888888888875  33456667888888888888887641 1223333 788888888888765552      23


Q ss_pred             ccCCCccceec
Q 036127          144 DLSLPTVEVLD  154 (155)
Q Consensus       144 ~~~~~~L~~l~  154 (155)
                      ...+|+|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            36788888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.69  E-value=1.3e-08  Score=63.37  Aligned_cols=86  Identities=12%  Similarity=0.084  Sum_probs=57.0

Q ss_pred             CCCcEEEcccCcCCCCcchhhhCCCcccEEEeeccc-ccccCchhhhCC----CCCceEEeeCcc-ccccCCccccCCCC
Q 036127           51 KQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNK-LHGEIPHEIANL----LNLEDLVLGMNI-LVGVFPAAIFNMST  124 (155)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~~~  124 (155)
                      ..|+.++++++.++...-..+..+++|+.|++++|. +++..-..+..+    ++|+.|++++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            457777777777765555556677788888887774 554444444443    367888888774 66543445667788


Q ss_pred             CcEEEccCCc-cc
Q 036127          125 LKVLMLINNS-LS  136 (155)
Q Consensus       125 L~~l~l~~n~-~~  136 (155)
                      |++|+++++. ++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            8888888774 44

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.68  E-value=8e-09  Score=65.19  Aligned_cols=111  Identities=14%  Similarity=0.152  Sum_probs=82.8

Q ss_pred             CCccEEEccCC-ccccc----CCchhhcCCCCccEEEccCcccccc----CCccccCCCCCcEEEcccCcCCCCc----c
Q 036127            2 SSISDIRLTNN-RLSGE----LPKNIGSYLPYLKALFLDKNMFHGK----IPSALSKCKQLQQLNLQFNNLSGAI----P   68 (155)
Q Consensus         2 ~~l~~l~l~~~-~~~~~----~~~~~~~~l~~l~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~   68 (155)
                      ++|+.|++++| .+.+.    +...+. ..+++++|++++|.+...    +...+...++|+.|++++|.+....    .
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            57899999999 88742    223333 568999999999998742    2334556688999999999987432    3


Q ss_pred             hhhhCCCcccEEEe--ecccccccC----chhhhCCCCCceEEeeCccccc
Q 036127           69 KEIGNLTMLKGIYL--EYNKLHGEI----PHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        69 ~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                      ..+...++|+.|++  ++|.+....    ...+...++|+.+++++|.+..
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            45566788999999  889887543    3445566899999999998764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.65  E-value=4.2e-09  Score=70.01  Aligned_cols=80  Identities=29%  Similarity=0.278  Sum_probs=58.6

Q ss_pred             cCCCCCcEEEcccCcCCCC--cchhhhCCCcccEEEeecccccccCchhhhCCC--CCceEEeeCccccccCC-------
Q 036127           48 SKCKQLQQLNLQFNNLSGA--IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLL--NLEDLVLGMNILVGVFP-------  116 (155)
Q Consensus        48 ~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~-------  116 (155)
                      ..+++|+.|++++|.+...  .+..+..+++|+.|++++|.+++.  ..+..+.  +|+.|++.+|.+++.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            3567899999999988752  345667788999999999988753  2333333  88999999998876444       


Q ss_pred             ccccCCCCCcEEE
Q 036127          117 AAIFNMSTLKVLM  129 (155)
Q Consensus       117 ~~~~~~~~L~~l~  129 (155)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2466788888876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.63  E-value=4.7e-07  Score=63.47  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=53.2

Q ss_pred             ccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCc
Q 036127           47 LSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK  126 (155)
Q Consensus        47 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~  126 (155)
                      |..+.+|+.+.+..+ +.......|..+.+|+.+++..+ ++......+..|.+|+.+.+..+ ++.....+|.+|.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            444555555555443 22233445556666666666532 44344555666666666666544 4444445666666666


Q ss_pred             EEEccCCcccCCCCcccccCCCcccee
Q 036127          127 VLMLINNSLSGSLPSRIDLSLPTVEVL  153 (155)
Q Consensus       127 ~l~l~~n~~~~~~~~~~~~~~~~L~~l  153 (155)
                      .+.+..+ ++ .+...+ .++++|+.+
T Consensus       370 ~i~lp~~-~~-~~~~~F-~~c~~L~~I  393 (394)
T 4fs7_A          370 KVELPKR-LE-QYRYDF-EDTTKFKWI  393 (394)
T ss_dssp             EEEEEGG-GG-GGGGGB-CTTCEEEEE
T ss_pred             EEEECCC-CE-Ehhhee-cCCCCCcEE
Confidence            6666543 22 222223 566666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.62  E-value=3.7e-08  Score=61.37  Aligned_cols=87  Identities=8%  Similarity=0.002  Sum_probs=69.0

Q ss_pred             CCccEEEccCccccccCCccccCCCCCcEEEcccCc-CCCCcchhhhCC----CcccEEEeeccc-ccccCchhhhCCCC
Q 036127           27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN-LSGAIPKEIGNL----TMLKGIYLEYNK-LHGEIPHEIANLLN  100 (155)
Q Consensus        27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~  100 (155)
                      ..|+.|+++++.++...-..+..+++|+.|++++|. +++..-..+...    ++|+.|++++|. +++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            369999999999886666667889999999999996 654444556554    479999999985 77666667788999


Q ss_pred             CceEEeeCcc-ccc
Q 036127          101 LEDLVLGMNI-LVG  113 (155)
Q Consensus       101 L~~l~l~~~~-~~~  113 (155)
                      |+.|++.+|. +++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            9999999985 443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.59  E-value=6.6e-07  Score=62.29  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=65.5

Q ss_pred             CCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhC
Q 036127           18 LPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIAN   97 (155)
Q Consensus        18 ~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~   97 (155)
                      ++...+..+..|+.+.+..+ ++.....+|..+.+++.+.+..+ +.......|..+.+|+.+.+..+.++......+..
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence            44444445566666666554 33233445666666777666543 32233445666777777777666665455566667


Q ss_pred             CCCCceEEeeCccccccCCccccCCCCCcEEEccC
Q 036127           98 LLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN  132 (155)
Q Consensus        98 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  132 (155)
                      |.+|+.+.+..+ ++.....+|.+|.+|+.+.+..
T Consensus       309 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          309 CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            777777776543 4444445677777777666643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.58  E-value=7.6e-07  Score=62.40  Aligned_cols=143  Identities=11%  Similarity=0.062  Sum_probs=108.3

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +++.+.+... .+ .+....+..+..++.+.+..+... .....|..+..++.+......+.   ...|..+.+|+.+.+
T Consensus       231 ~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          231 GVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL  304 (394)
T ss_dssp             CCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred             CCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence            4666666543 33 566666667889999999887655 55667888999999888765433   346778889999998


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ..+ ++......+..|.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++ .++...|.++++|+.+++
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEE
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEE
Confidence            754 55466778889999999999654 66656678999999999999766 66 677766689999987753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.52  E-value=3e-06  Score=58.94  Aligned_cols=129  Identities=15%  Similarity=0.086  Sum_probs=94.8

Q ss_pred             hhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCC
Q 036127           22 IGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNL  101 (155)
Q Consensus        22 ~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  101 (155)
                      .+....+++.+.+..+--. ....++..+..|+.+.+..+ +.......|..+.+++.+.+..+ ++......+..|.+|
T Consensus       212 ~f~~~~~l~~i~~~~~~~~-i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSGVTT-LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTTCCE-ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccceeE-EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3335567777777655322 44556778889999998765 44345567888889999988654 543555678889999


Q ss_pred             ceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          102 EDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       102 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +.+.+.++.++.....+|.++.+|+.+.+..+ ++ .+....|.++++|+.+.+
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEE
Confidence            99999888888766789999999999999654 66 666666688888877653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.43  E-value=1.9e-06  Score=60.42  Aligned_cols=115  Identities=13%  Similarity=0.160  Sum_probs=81.2

Q ss_pred             cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhh
Q 036127           17 ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA   96 (155)
Q Consensus        17 ~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   96 (155)
                      .+...++..+..++.+.+..+... ....+|..+..|+.+.+.. .+.......|..+.+|+.+.+..+ ++......+.
T Consensus       255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             EcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            344556666778888888766544 4556677888888888864 343344567888888888888753 5545567788


Q ss_pred             CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127           97 NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      .|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.++..
T Consensus       332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            8888888888654 6665557888888888888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.38  E-value=4.2e-06  Score=58.62  Aligned_cols=126  Identities=12%  Similarity=0.139  Sum_probs=87.4

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ..|+.+.+..+. + .+....+..++.|+.+.+..+ ++.....+|..|.+|+.+.+..+ +.......|.++.+|+.+.
T Consensus       265 ~~L~~i~lp~~~-~-~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          265 AYLASVKMPDSV-V-SIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             SSCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEeccccc-c-eecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            456777776543 3 467777778899999999754 44355667999999999999865 4435567899999999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      +..+ ++......+.+|.+|+.+.+.++....   ..+..+.+|+.+.+..+.+
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            9754 665667889999999999998875432   3566778888888766544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.80  E-value=6.4e-05  Score=44.50  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=31.7

Q ss_pred             EEEccCCccc-ccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCC
Q 036127            6 DIRLTNNRLS-GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS   64 (155)
Q Consensus         6 ~l~l~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~   64 (155)
                      .++.+++.++ ..+|..+.   ++++.|++++|.++...+..|..+++|+.|++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4556666554 24454332   35666666666666444444566666666666666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.37  E-value=0.00016  Score=45.85  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=67.5

Q ss_pred             CCCccEEEccCc-cccc----cCCccccCCCCCcEEEcccCcCCCCc----chhhhCCCcccEEEeecccccccCc----
Q 036127           26 LPYLKALFLDKN-MFHG----KIPSALSKCKQLQQLNLQFNNLSGAI----PKEIGNLTMLKGIYLEYNKLHGEIP----   92 (155)
Q Consensus        26 l~~l~~l~l~~n-~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----   92 (155)
                      -+.|+.|+++++ .+..    .+..++..-+.|+.|++++|.+....    ...+..-++|+.|++++|.+.....    
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            457888888875 6542    22334555577888888888876322    2233345678888888888765433    


Q ss_pred             hhhhCCCCCceEEeeCc---ccccc----CCccccCCCCCcEEEccCCcc
Q 036127           93 HEIANLLNLEDLVLGMN---ILVGV----FPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        93 ~~~~~~~~L~~l~l~~~---~~~~~----~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      ..+..-..|+.|++.++   .+...    +..++..-+.|..++++.+.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            33444466888888654   33321    233455557788888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.20  E-value=0.00081  Score=39.69  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=41.0

Q ss_pred             cEEEcccCcCC-CCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCcccc
Q 036127           54 QQLNLQFNNLS-GAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILV  112 (155)
Q Consensus        54 ~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  112 (155)
                      ..++-+++.++ ...|..+  ..+++.|++++|.++..-+..+..+++|+.+++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777665 2344322  246899999999998555566788889999999999774

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.52  E-value=0.0025  Score=40.37  Aligned_cols=87  Identities=13%  Similarity=0.073  Sum_probs=62.6

Q ss_pred             ccCCCCCcEEEcccC-cCCCC----cchhhhCCCcccEEEeecccccccC----chhhhCCCCCceEEeeCcccccc---
Q 036127           47 LSKCKQLQQLNLQFN-NLSGA----IPKEIGNLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVGV---  114 (155)
Q Consensus        47 ~~~~~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~---  114 (155)
                      +..-+.|+.|+++++ .+...    ....+..-++|+.|++++|.+....    ...+..-..|+.|++..|.++..   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344578999999985 76532    2234555678999999999987543    34445567899999999999763   


Q ss_pred             -CCccccCCCCCcEEEccCC
Q 036127          115 -FPAAIFNMSTLKVLMLINN  133 (155)
Q Consensus       115 -~~~~~~~~~~L~~l~l~~n  133 (155)
                       +..++..-+.|+.|+++++
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             2244556677999999865

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.59  E-value=1.1  Score=24.85  Aligned_cols=43  Identities=16%  Similarity=0.168  Sum_probs=20.6

Q ss_pred             cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEccc
Q 036127           17 ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF   60 (155)
Q Consensus        17 ~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~   60 (155)
                      .+....|..+.+|+.+.+..+--. ....+|..|.+|+.+.+.+
T Consensus        10 ~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           10 GMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             SSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred             EecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence            444445545555555555444221 3334455555555555543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.53  E-value=1.9  Score=23.87  Aligned_cols=46  Identities=15%  Similarity=0.068  Sum_probs=27.9

Q ss_pred             ccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc
Q 036127           39 FHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN   85 (155)
Q Consensus        39 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   85 (155)
                      ++..-..+|.+|.+|+.+.+..+- +......|..+.+|+.+.+...
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred             cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence            333344567777777777776542 3244556777777777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 1e-10
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 34  LDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIP 92
           L  N  +G +P  L++ K L  LN+ FNNL G IP + GNL          NK     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.6 bits (127), Expect = 7e-10
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 50  CKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMN 109
            K L  L+L+ N + G +P+ +  L  L  + + +N L GEIP +  NL   +      N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP 68
              NR+SG +P + GS+     ++ + +N   GKIP   +          +      A  
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128
               +    K    + +         ++  LN  DL    N + G  P  +  +  L  L
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL--RNNRIYGTLPQGLTQLKFLHSL 273

Query: 129 MLINNSLSGSLPSRIDLSLPTVEVLD 154
            +  N+L G +P     +L   +V  
Sbjct: 274 NVSFNNLCGEIPQ--GGNLQRFDVSA 297

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 52  QLQQLNLQFNNLSGA--IPKEIGNLTMLKGIYLEYN-KLHGEIPHEIANLLNLEDLVLGM 108
           ++  L+L   NL     IP  + NL  L  +Y+     L G IP  IA L  L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 109 NILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
             + G  P  +  + TL  L    N+LSG+LP  I
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 6e-09
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 25  YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84
            L  L  L L  N      P  +S   +LQ+L    N +S      + NLT +  +   +
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 85  NKLHGEIPHEIANLLNLEDLVLGMN 109
           N++    P  +ANL  +  L L   
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 29/160 (18%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60
           ++++ ++ L  N+L       + S L  L  L L  N      P  LS   +L +L L  
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 61  NNLSGAIP--------------------KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLN 100
           N +S   P                      I NL  L  + L +N +    P  +++L  
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330

Query: 101 LEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140
           L+ L    N +     +++ N++ +  L   +N +S   P
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA 66
           + L  N +S   P    S L  L+ LF   N       S+L+    +  L+   N +S  
Sbjct: 312 LTLYFNNISDISPV---SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

Query: 67  IPKEIGNLTMLKGIYLEYN 85
            P  + NLT +  + L   
Sbjct: 367 TP--LANLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 3e-08
 Identities = 29/125 (23%), Positives = 44/125 (35%)

Query: 18  LPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTML 77
           L   +   L  L+ L+L  N               L  L L  N +S    +    L  L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 78  KGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG 137
             + L  N++    PH   +L  L  L L  N L  +   A+  +  L+ L L +N    
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 138 SLPSR 142
              +R
Sbjct: 240 DCRAR 244

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-07
 Identities = 30/123 (24%), Positives = 44/123 (35%)

Query: 11  NNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE 70
           +N     +       L  L  L LD+       P        LQ L LQ N L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 71  IGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLML 130
             +L  L  ++L  N++          L +L+ L+L  N +  V P A  ++  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 131 INN 133
             N
Sbjct: 209 FAN 211

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 35/165 (21%), Positives = 54/165 (32%), Gaps = 26/165 (15%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKI------------------ 43
           ++   I L  NR+S  +P         L  L+L  N+                       
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 44  -------PSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA 96
                  P+      +L  L+L    L    P     L  L+ +YL+ N L         
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 97  NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS 141
           +L NL  L L  N +  V   A   + +L  L+L  N ++   P 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 8e-08
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 42  KIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNL 101
           K+P  L        L+LQ N ++     +  NL  L  + L  NK+    P   A L+ L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 102 EDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135
           E L L  N L  +       +  L+V       +
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 52  QLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNIL 111
            L+ +      L   +PK++        + L+ NK+      +  NL NL  L+L  N +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 112 VGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
             + P A   +  L+ L L  N L   LP ++
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 3   SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62
            +  ++ ++  L  ++PK++    P    L L  N             K L  L L  N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 63  LSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNM 122
           +S   P     L  L+ +YL  N+L  E+P ++     L++L +  N +  V  +    +
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGL 123

Query: 123 STLKVLMLINNSLSGS 138
           + + V+ L  N L  S
Sbjct: 124 NQMIVVELGTNPLKSS 139

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 8e-04
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 26  LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN 85
              +  L  +     G    A    K+L  + +   N++  IP+  G    L  ++L+ N
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGN 181

Query: 86  KLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDL 145
           K+       +  L NL  L L  N +  V   ++ N   L+ L L NN L        D 
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 4e-07
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 4/89 (4%)

Query: 9  LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGK----IPSALSKCKQLQQLNLQFNNLS 64
          +    LS      +   L   + + LD           I SAL     L +LNL+ N L 
Sbjct: 9  IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 65 GAIPKEIGNLTMLKGIYLEYNKLHGEIPH 93
                +          ++   L      
Sbjct: 69 DVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 7e-07
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 27  PYLKALFLDKNMFHGK----IPSALSKCKQLQQLNLQFNNLSGAIPKEIG-----NLTML 77
             L+ L+L            + + L     L++L+L  N L  A   ++         +L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 78  KGIYLEYNKLHGEIPHEIANLL 99
           + + L       E+   +  L 
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 53  LQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLL----NLEDLVLG 107
           +Q L++Q   LS A   E+   L   + + L+   L      +I++ L     L +L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 108 MNILVGVFPAAIFNMSTLKVLMLINNSLSG 137
            N L  V    +          +   SL  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 4e-04
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYL---PYLKALFLDKNMFHGKIPSALSK-----CKQ 52
            S +  + L +  +S     ++ + L     L+ L L  N         L +        
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 53  LQQLNLQFNNLSGAIPKEIGNL 74
           L+QL L     S  +   +  L
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 7e-04
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 23/99 (23%)

Query: 50  CKQLQQLNLQFNNLSG----AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLV 105
              L+ L L   ++S     ++   +     L+ + L  N L      ++   +      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ---- 423

Query: 106 LGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRID 144
                              L+ L+L +   S  +  R+ 
Sbjct: 424 ---------------PGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 4e-05
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 33  FLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIP 92
               N    +I S       L++LN+  N L   +P     L  L      +N L  E+P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHL-AEVP 320

Query: 93  HEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKV 127
                  NL+ L +  N L   FP    ++  L++
Sbjct: 321 ELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 50 CKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANL 98
           +Q  +L L    LS ++P+   +L  L       N L  E+P    +L
Sbjct: 37 DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSL 80

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG- 65
           + LT   L  ++   + S    + A    ++     +    S  + +Q ++L  + +   
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 66  AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104
            +   +   + L+ + LE  +L   I + +A   NL  L
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 35  DKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLH 88
             N         L+  + L  L LQ N+L   IPK      +L   +L  N   
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 4e-04
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 48  SKCKQLQQLNLQFNNLSGAIPKEIG-NLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVL 106
           SK     ++N    NL+ A+P ++  + T+L   +L  N L+      +     L  L L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNL 62

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 7e-04
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 8/147 (5%)

Query: 13  RLSGELPKNIGSY--LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE 70
           +L+ EL +    Y      + L L        I +  +   Q   ++   N +       
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-- 58

Query: 71  IGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV---FPAAIFNMSTLKV 127
              L  LK + +  N++          L +L +L+L  N LV +    P A     T   
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 128 LMLINNSLSGSLPSRIDLSLPTVEVLD 154
           ++    +        +   +P V VLD
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 9e-04
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 43  IPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLE 102
           +   L +   +  L+L  N L    P  +  L  L+ +    N L           L   
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQEL 70

Query: 103 DLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG--SLPSRIDLSLPTVEVL 153
            L     +        + +   L +L L  NSL     +  R+   LP+V  +
Sbjct: 71  LL-CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 2/86 (2%)

Query: 50  CKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLVLGM 108
                 L    +         +     L  +Y+E  +    +       L  L +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 109 NILVGVFPAAIFNMSTLKVLMLINNS 134
           + L  V P A      L  L L  N+
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNA 91

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 35  DKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHE 94
                     + L+   +L  L    N +S   P  + +L  L  ++L+ N++    P  
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-- 212

Query: 95  IANLLNLEDLVL 106
           +AN  NL  + L
Sbjct: 213 LANTSNLFIVTL 224

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.002
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 16  GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS 64
            ELP ++         L + +   H      L   K+L+  +    NL 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 34.1 bits (76), Expect = 0.004
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 13/85 (15%)

Query: 33  FLDKNMFHGKIPSALSKC------KQLQQLNLQFNNLSGAIPKEI-----GNLTMLKGIY 81
            L+  +   +  +A+           LQ L LQ+N +     + +       +  L  + 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 82  LEYNKLH--GEIPHEIANLLNLEDL 104
           L  N+     ++  EI  + +    
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGR 333

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.75
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.19
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.96
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.29

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.1e-21  Score=126.67  Aligned_cols=148  Identities=22%  Similarity=0.229  Sum_probs=100.3

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.|++++|.++ .++...+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+. ..+..+..+++|+.++
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-cccccccccccccccc
Confidence            35777888888887 666665557778888888888776 332 2345667777777777665 3344455555555555


Q ss_pred             eecc------------------------cccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccC
Q 036127           82 LEYN------------------------KLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG  137 (155)
Q Consensus        82 l~~~------------------------~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (155)
                      ++++                        .++...+..+..++.++.+++.+|+++...+..+..+++|++|++++|.++ 
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            5554                        444333344555677778888888887766677778888888888888888 


Q ss_pred             CCCcccccCCCccceecC
Q 036127          138 SLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       138 ~~~~~~~~~~~~L~~l~l  155 (155)
                      .+|..+ ..+++|++|+|
T Consensus       186 ~lp~~~-~~~~~L~~L~L  202 (266)
T d1p9ag_         186 TIPKGF-FGSHLLPFAFL  202 (266)
T ss_dssp             CCCTTT-TTTCCCSEEEC
T ss_pred             ccChhH-CCCCCCCEEEe
Confidence            888777 56777877764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-20  Score=124.80  Aligned_cols=145  Identities=26%  Similarity=0.310  Sum_probs=109.7

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      .+.+++++++.++ .+|+.+.   +++++|++++|.++...+.+|..+++|+.|++++|.+. ..+ .++.+++|+.|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccc
Confidence            4567899999999 8887764   67999999999999665677999999999999999987 444 3578899999999


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCcccccc------------------------CCccccCCCCCcEEEccCCcccCC
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGV------------------------FPAAIFNMSTLKVLMLINNSLSGS  138 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~------------------------~~~~~~~~~~L~~l~l~~n~~~~~  138 (155)
                      ++|+++ ..+..+..+++|+.+++.++.+...                        .+..+..+++++.+++++|.++ .
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~  162 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-E  162 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-C
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc-c
Confidence            999987 4456666677777777766654432                        3344455667777777777777 4


Q ss_pred             CCcccccCCCccceecC
Q 036127          139 LPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       139 ~~~~~~~~~~~L~~l~l  155 (155)
                      ++...+..+++|++||+
T Consensus       163 ~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             CCTTTTTTCTTCCEEEC
T ss_pred             cCccccccccccceeec
Confidence            55444477777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=1.4e-20  Score=126.64  Aligned_cols=152  Identities=29%  Similarity=0.453  Sum_probs=78.2

Q ss_pred             CCccEEEccC-CcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            2 SSISDIRLTN-NRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         2 ~~l~~l~l~~-~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      ++|+.|++++ |.++|.+|+.+. .+++|++|++++|.+.+..+..+..+..|+.+++..|.+....|..+..++.++.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccc-cccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            4455555553 455555555554 45555555555555554444444444445555555444444444555555555555


Q ss_pred             EeecccccccCchhhhCCCCC-ceEEeeCcccccc---------------------------------------------
Q 036127           81 YLEYNKLHGEIPHEIANLLNL-EDLVLGMNILVGV---------------------------------------------  114 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L-~~l~l~~~~~~~~---------------------------------------------  114 (155)
                      ++.+|.+.+..|..+..+..+ +.+.+..|++++.                                             
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            555555544444433333322 2233332222111                                             


Q ss_pred             -CCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          115 -FPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       115 -~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                       .+..+..+++++.+++++|.+++.+|..+ +.+++|++||+
T Consensus       235 ~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l-~~L~~L~~L~L  275 (313)
T d1ogqa_         235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNV  275 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEEC
T ss_pred             ccccccccccccccccCccCeecccCChHH-hCCCCCCEEEC
Confidence             11123345666777777777777777766 66777777764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.1e-20  Score=121.39  Aligned_cols=150  Identities=25%  Similarity=0.259  Sum_probs=89.1

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCcccccc-------------------------CCccccCCCCCcEEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGK-------------------------IPSALSKCKQLQQLN   57 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~-------------------------~~~~~~~~~~L~~l~   57 (155)
                      +++.|++++|.++ .+|+..+..+++++++++++|.+...                         .+..+..+++|+.++
T Consensus        33 ~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            5677888888887 67766665777888888877765311                         123344556677777


Q ss_pred             cccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccC
Q 036127           58 LQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG  137 (155)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (155)
                      ++.|.+....+..+....+|+.+++.+|.+++..+..+..+++++.+++.+|.+....+.++.++++|+.+++++|.+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            76666554444445555566666666666654444455555566666666666655545555555666666666665553


Q ss_pred             CCCcccccCCCccceec
Q 036127          138 SLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       138 ~~~~~~~~~~~~L~~l~  154 (155)
                      ..|..+ ..+++|++||
T Consensus       192 i~~~~f-~~l~~L~~L~  207 (284)
T d1ozna_         192 VHPHAF-RDLGRLMTLY  207 (284)
T ss_dssp             ECTTTT-TTCTTCCEEE
T ss_pred             cChhHh-hhhhhccccc
Confidence            333333 5555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=4.8e-20  Score=116.06  Aligned_cols=129  Identities=22%  Similarity=0.306  Sum_probs=115.7

Q ss_pred             ccEEEccCCcccccCCchhhcCCCCccEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG-KIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      .+.+++++++++ .+|+.+.   +++++|++++|.++. ..+..|..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            467899999999 8998765   689999999999975 34556889999999999999998777888999999999999


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      ++|++++..+..+..+++|++|++++|+++...+.+|..+++|+++++++|.+.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            999999777788999999999999999999988889999999999999999886

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-18  Score=115.99  Aligned_cols=138  Identities=25%  Similarity=0.278  Sum_probs=114.4

Q ss_pred             cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhh
Q 036127           17 ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA   96 (155)
Q Consensus        17 ~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   96 (155)
                      .+++..+..+++|+++++++|.+....+..+....+|+.+++.+|.+....+..|..+++|+.|++++|.+++..+..+.
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence            34444555788999999999988755566677788999999999999866667788888999999999999877677888


Q ss_pred             CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           97 NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      .+++|+.+++.+|.+++..|..|..+++++++++++|.+. .++...+..+++|+++++
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEEC
T ss_pred             cccccchhhhhhccccccChhHhhhhhhcccccccccccc-cccccccccccccCEEEe
Confidence            8999999999999999888888999999999999999998 555555588999988875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=8.8e-19  Score=117.76  Aligned_cols=144  Identities=30%  Similarity=0.547  Sum_probs=124.8

Q ss_pred             CccEEEccCCcccc--cCCchhhcCCCCccEEEccC-ccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccE
Q 036127            3 SISDIRLTNNRLSG--ELPKNIGSYLPYLKALFLDK-NMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKG   79 (155)
Q Consensus         3 ~l~~l~l~~~~~~~--~~~~~~~~~l~~l~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   79 (155)
                      .++.|+++++.+++  .+|+.+. .+++|++|++++ |.+.+.+|..+..+++|++|++++|.+....+..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            47889999999886  4788888 899999999987 7888889999999999999999999998777778888999999


Q ss_pred             EEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCC-cEEEccCCcccCCCCcccccCCC
Q 036127           80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL-KVLMLINNSLSGSLPSRIDLSLP  148 (155)
Q Consensus        80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L-~~l~l~~n~~~~~~~~~~~~~~~  148 (155)
                      +++.+|.+.+..|..+..++.++++++.+|.+.+.+|..+..+.++ +.+++++|.+++..|..+ ..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~-~~l~  198 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN  198 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            9999999988899999999999999999999998888888887765 788888888886666554 4443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=4.8e-18  Score=108.21  Aligned_cols=141  Identities=26%  Similarity=0.449  Sum_probs=96.5

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      |++|+.|++++|.++ .+++ +. .+++|++|++++|.++ .++ .+..+++|+.+++.++.+. . ...+..+++++.+
T Consensus        67 l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~-~~~l~~l~~l~~l  139 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-D-INGLVHLPQLESL  139 (210)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-C-CGGGGGCTTCCEE
T ss_pred             CCCCCEEeCCCcccc-Cccc-cc-cCcccccccccccccc-ccc-ccccccccccccccccccc-c-ccccccccccccc
Confidence            345666666666666 4442 22 4666666666666665 223 3555666666666666654 2 2335566667777


Q ss_pred             EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++.+|.+++  +..+..+++|+.+++.+|.+++. + .+.++++|+.+++++|.++ .+|. + +++++|++|++
T Consensus       140 ~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~~-l-~~l~~L~~L~L  207 (210)
T d1h6ta2         140 YLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLRA-L-AGLKNLDVLEL  207 (210)
T ss_dssp             ECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEEE
T ss_pred             ccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC-CChh-h-cCCCCCCEEEc
Confidence            777666652  34566788999999999998873 3 4788999999999999998 7764 5 88999999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=4.2e-18  Score=113.98  Aligned_cols=150  Identities=24%  Similarity=0.288  Sum_probs=98.2

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcch------------
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPK------------   69 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~------------   69 (155)
                      ++++.|++++|.++ .+++..+..+++|+++++++|.+....+.+|..++.|+.+++++|.+.. .|.            
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECC
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccchhhhhhhhhcc
Confidence            45788888888888 7777666578888888888888876556677778888888877765431 110            


Q ss_pred             ------------------------------------hhhCCCcccEEEeecc---------------------cccccCc
Q 036127           70 ------------------------------------EIGNLTMLKGIYLEYN---------------------KLHGEIP   92 (155)
Q Consensus        70 ------------------------------------~~~~~~~L~~L~l~~~---------------------~~~~~~~   92 (155)
                                                          .+..+++|+.+++.+|                     ......+
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCCh
Confidence                                                0112233334444333                     3333334


Q ss_pred             hhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           93 HEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        93 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ..+..++.++.+++++|.+.+..+..+.++++|+++++++|.++ .+|..+ ..+++|++|++
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l-~~l~~L~~L~L  249 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYL  249 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT-TTCSSCCEEEC
T ss_pred             hHhhccccccccccccccccccccccccccccceeeeccccccc-cccccc-ccccCCCEEEC
Confidence            44555566666777777666666666777777788888777777 677665 66777777764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=2.9e-18  Score=107.79  Aligned_cols=124  Identities=21%  Similarity=0.239  Sum_probs=108.8

Q ss_pred             CccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEe
Q 036127           28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVL  106 (155)
Q Consensus        28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  106 (155)
                      ..++++.+++.++ .+|..+.  +++++|++++|.++. ..+..|..+++|+.|++++|.+....+..+..+++|+.+++
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3567899999998 7777653  689999999999974 44567889999999999999999888888999999999999


Q ss_pred             eCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127          107 GMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++|+++...+.+|.++++|++|++++|.++ .+|...|..+++|+++++
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEEC
T ss_pred             ccccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCcccccccc
Confidence            999999988889999999999999999999 777766689999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.4e-17  Score=103.40  Aligned_cols=138  Identities=23%  Similarity=0.393  Sum_probs=78.7

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++|+.|++++|.++ .+++ +. .+++|+.|++++|.+. ..+ .+..++.|+.+++.++....  ...+..+++|+.++
T Consensus        62 ~nL~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~  134 (199)
T d2omxa2          62 NNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLE  134 (199)
T ss_dssp             TTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEE
T ss_pred             CCcCcCcccccccc-Cccc-cc-CCcccccccccccccc-ccc-cccccccccccccccccccc--ccccchhhhhHHhh
Confidence            44555555555555 3332 22 4555555555555544 222 24455555555555555442  12355566666777


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL  153 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l  153 (155)
                      +++|.+. . .+.+..+++++.+++.+|.+++. + .+.++++|+++++++|+++ .++. + +++++|+.|
T Consensus       135 l~~n~l~-~-~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~-~i~~-l-~~L~~L~~L  199 (199)
T d2omxa2         135 LSSNTIS-D-ISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVS-DISV-L-AKLTNLESL  199 (199)
T ss_dssp             CCSSCCC-C-CGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCSEE
T ss_pred             hhhhhhc-c-cccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCC-CCcc-c-cCCCCCCcC
Confidence            6666664 2 23455667777777777776663 2 3667777788888777777 5543 3 667777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4e-18  Score=104.32  Aligned_cols=126  Identities=19%  Similarity=0.197  Sum_probs=86.5

Q ss_pred             CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127           25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL  104 (155)
Q Consensus        25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  104 (155)
                      .+.++++|++++|.|+ .++..+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.++...+..+..+++|+++
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4567777888888777 44555566777888888888776 332 36677778888888887774444445667788888


Q ss_pred             EeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceec
Q 036127          105 VLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLD  154 (155)
Q Consensus       105 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~  154 (155)
                      ++.+|++..... ..+..+++|+++++++|+++ ..|.   .+++.+|+|++||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            888887765322 35667788888888888877 5553   2236678887776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.3e-17  Score=96.58  Aligned_cols=101  Identities=27%  Similarity=0.334  Sum_probs=49.5

Q ss_pred             EEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCcc
Q 036127           31 ALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNI  110 (155)
Q Consensus        31 ~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  110 (155)
                      +|++++|.++ ..+ .+..+++|++|++++|.+. ..|..++.+++|+.|++++|.++. +| .+..+++|+++++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            3444444444 222 2444445555555555544 333444455555555555555542 22 34455555555555555


Q ss_pred             ccccCC-ccccCCCCCcEEEccCCccc
Q 036127          111 LVGVFP-AAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus       111 ~~~~~~-~~~~~~~~L~~l~l~~n~~~  136 (155)
                      ++.... ..+..+++|+.+++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554221 34555566666666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.4e-16  Score=100.52  Aligned_cols=140  Identities=23%  Similarity=0.371  Sum_probs=116.1

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+++.|+++++.++ .++ ++. .+++|++|++++|.+++. + .+..+++|+.+++++|.+. ..+ .+..+++|+.++
T Consensus        40 ~~l~~L~l~~~~i~-~l~-~l~-~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIK-SID-GVE-YLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCC-Ccc-ccc-cCCCcCcCccccccccCc-c-cccCCcccccccccccccc-ccc-cccccccccccc
Confidence            57899999999998 664 344 799999999999999843 3 3889999999999999887 333 478899999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      ++++....  ...+..+++|+.+++++|.+.. ++ .+..+++++.+++.+|.++ .++. + +++++|++|++
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~-~l~~-l-~~l~~L~~L~l  179 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVT-DLKP-L-ANLTTLERLDI  179 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCC-CCGG-G-TTCTTCCEEEC
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhhhcc-cc-ccccccccccccccccccc-CCcc-c-cCCCCCCEEEC
Confidence            99988763  3457789999999999999876 33 6788999999999999998 6654 4 78999999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-17  Score=101.75  Aligned_cols=124  Identities=18%  Similarity=0.170  Sum_probs=101.5

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ..++.|++++|.++ .++.. +..+++|+.|++++|.++ .+ +.+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            46889999999999 78754 447899999999999998 44 3578899999999999999855555667899999999


Q ss_pred             eecccccccCc-hhhhCCCCCceEEeeCccccccC---CccccCCCCCcEEE
Q 036127           82 LEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVF---PAAIFNMSTLKVLM  129 (155)
Q Consensus        82 l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~  129 (155)
                      +++|.++.... ..+..+++|+++++.+|+++...   +..+..+++|++++
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999974322 46788999999999999997732   13567889999887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.1e-16  Score=93.58  Aligned_cols=118  Identities=21%  Similarity=0.216  Sum_probs=96.0

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY   84 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~   84 (155)
                      |.|++++|.++ .++. +. .++++++|++++|.++ ..|..+..+++|+.+++++|.+. ..+ .+..+++|+.+++++
T Consensus         1 R~L~Ls~n~l~-~l~~-l~-~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCcc-cc-cCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            57999999999 7764 44 7999999999999998 67888999999999999999998 444 488999999999999


Q ss_pred             ccccccC-chhhhCCCCCceEEeeCccccccC---CccccCCCCCcEE
Q 036127           85 NKLHGEI-PHEIANLLNLEDLVLGMNILVGVF---PAAIFNMSTLKVL  128 (155)
Q Consensus        85 ~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l  128 (155)
                      |.+++.. ...+..+++|+.+++.+|+++...   ......+|+++.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9998443 256788999999999999987632   2233445666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=4.2e-16  Score=104.14  Aligned_cols=147  Identities=20%  Similarity=0.272  Sum_probs=105.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ++++.+++++|.++ .++...   +++++.+++++|......+..+..++.++.|++++|.+....+..+..+++|+.|+
T Consensus       150 ~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         150 KKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             TTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             cccCccccccCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            46777888888877 666543   47788888888887766677788888888888888888766667777888888888


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCcc------ccCCCCCcEEEccCCccc-CCCCcccccCCCcccee
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAA------IFNMSTLKVLMLINNSLS-GSLPSRIDLSLPTVEVL  153 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~------~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~L~~l  153 (155)
                      +++|+++ .+|..+..+++|+.+++++|+++......      ....++|+.+++++|++. ..++...|..+.....+
T Consensus       226 L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         226 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             ccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence            8888887 56777888888888888888877643223      234567888888888764 24444443444443333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.1e-15  Score=97.18  Aligned_cols=140  Identities=28%  Similarity=0.428  Sum_probs=115.1

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+++.|+++++.++ .++ .+. .+++|++|++++|.+++ .+ .+..+++|+.|++++|.+. ..+ .+..+++|+.++
T Consensus        46 ~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred             cCccEEECcCCCCC-Cch-hHh-hCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccc
Confidence            46889999999998 554 344 79999999999999984 33 3678899999999999987 444 578899999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +.++.+. . ...+..++.++.+++.+|.+++.  ..+..+++|+.+++++|.++ .++. + +.+++|+.|++
T Consensus       119 l~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~-~i~~-l-~~l~~L~~L~L  185 (210)
T d1h6ta2         119 LEHNGIS-D-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-L-AGLTKLQNLYL  185 (210)
T ss_dssp             CTTSCCC-C-CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-G-TTCTTCCEEEC
T ss_pred             ccccccc-c-ccccccccccccccccccccccc--cccccccccccccccccccc-cccc-c-cCCCCCCEEEC
Confidence            9999876 2 34677889999999999988763  35677899999999999998 6654 4 78999999885

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.8e-15  Score=97.11  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=52.6

Q ss_pred             hCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127           72 GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE  151 (155)
Q Consensus        72 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~  151 (155)
                      ..+++++.+++.+|.+..  ...+..+++|+.+++++|.+++ ++ .+..+++|+++++++|+++ .++. + ..+++|+
T Consensus       148 ~~~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l-~~l~~L~  220 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLF  220 (227)
T ss_dssp             GGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCC
T ss_pred             cccccccccccccccccc--chhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc-c-ccCCCCC
Confidence            344556666666665542  2335677788888888887776 33 4677888888888888887 5653 4 6788888


Q ss_pred             eecC
Q 036127          152 VLDC  155 (155)
Q Consensus       152 ~l~l  155 (155)
                      +|++
T Consensus       221 ~L~l  224 (227)
T d1h6ua2         221 IVTL  224 (227)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.4e-15  Score=95.85  Aligned_cols=142  Identities=22%  Similarity=0.312  Sum_probs=104.1

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      .+|+.|++.+|.++ .++ .+. .+++|+++++++|.+++..  .+..+++++.+++.++.++ .. +.+..+++|+.+.
T Consensus        41 ~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NV-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCEEE
T ss_pred             CCcCEEECCCCCCC-cch-hHh-cCCCCcEeecCCceeeccc--ccccccccccccccccccc-cc-ccccccccccccc
Confidence            46788888888888 564 444 7888889998888887432  3677788888888888776 22 3466777787777


Q ss_pred             eeccccccc--------------------CchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127           82 LEYNKLHGE--------------------IPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS  141 (155)
Q Consensus        82 l~~~~~~~~--------------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  141 (155)
                      ++++...+.                    ....+..+++|+.+++.+|.+...  ..+.++++|+.+++++|.++ .++.
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~~  190 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DISP  190 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccC-CChh
Confidence            777654321                    122345567888999988887653  24788999999999999998 6664


Q ss_pred             ccccCCCccceecC
Q 036127          142 RIDLSLPTVEVLDC  155 (155)
Q Consensus       142 ~~~~~~~~L~~l~l  155 (155)
                       + +.+++|++|++
T Consensus       191 -l-~~l~~L~~L~L  202 (227)
T d1h6ua2         191 -L-ASLPNLIEVHL  202 (227)
T ss_dssp             -G-GGCTTCCEEEC
T ss_pred             -h-cCCCCCCEEEC
Confidence             4 78999999885

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=6.4e-15  Score=100.81  Aligned_cols=142  Identities=23%  Similarity=0.330  Sum_probs=102.1

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC---------------
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA---------------   66 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---------------   66 (155)
                      ++++.+++++|.++ .++ .+. .+++++.+++++|.+++. + .+..+++|+.++++++.+...               
T Consensus       219 ~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         219 TNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNL-A-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELN  293 (384)
T ss_dssp             TTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             CCCCEEECCCCCCC-Ccc-hhh-cccccchhccccCccCCC-C-cccccccCCEeeccCcccCCCCcccccccccccccc
Confidence            46777788887777 444 233 567777777777777632 2 255666777777766655421               


Q ss_pred             -----cchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127           67 -----IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS  141 (155)
Q Consensus        67 -----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  141 (155)
                           ....+..+++++.+++++|.+++. + .+..+++|+.+++++|.+++ ++ .+.++++|+++++++|.++ .++.
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~-~l~~  368 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS-DLTP  368 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC-BCGG
T ss_pred             ccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC-CChh
Confidence                 122355667888888888888743 3 36788999999999999887 44 5888999999999999998 5554


Q ss_pred             ccccCCCccceecC
Q 036127          142 RIDLSLPTVEVLDC  155 (155)
Q Consensus       142 ~~~~~~~~L~~l~l  155 (155)
                       + .++++|+.|++
T Consensus       369 -l-~~l~~L~~L~L  380 (384)
T d2omza2         369 -L-ANLTRITQLGL  380 (384)
T ss_dssp             -G-TTCTTCSEEEC
T ss_pred             -h-ccCCCCCEeeC
Confidence             4 78999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-15  Score=98.44  Aligned_cols=151  Identities=19%  Similarity=0.155  Sum_probs=93.7

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccC-CccccCCCCCcEEEccc-CcCCCCcchhhhCCCcccE
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKI-PSALSKCKQLQQLNLQF-NNLSGAIPKEIGNLTMLKG   79 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~   79 (155)
                      ++++.|++++|.++ .+|...+..+++|+++++++|.+.... +.+|..++.++.+.+.. +.+....+..|..+++|+.
T Consensus        29 ~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            46888999999888 788777668899999999988775433 33566677777776643 3444344555666777777


Q ss_pred             EEeecccccccCc-------------------------hhhhCC-CCCceEEeeCcc-----------------------
Q 036127           80 IYLEYNKLHGEIP-------------------------HEIANL-LNLEDLVLGMNI-----------------------  110 (155)
Q Consensus        80 L~l~~~~~~~~~~-------------------------~~~~~~-~~L~~l~l~~~~-----------------------  110 (155)
                      +++.++.++...+                         ..+..+ ..+..+++.+|.                       
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCT
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccc
Confidence            7777665532111                         111111 123334444433                       


Q ss_pred             -ccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127          111 -LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD  154 (155)
Q Consensus       111 -~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  154 (155)
                       ++...+..|.++++|+.+++++|.++ .+|...+.++++|++++
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS  231 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSS
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCc
Confidence             33322344667778888888888887 66665557777777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.62  E-value=6.9e-18  Score=106.48  Aligned_cols=143  Identities=23%  Similarity=0.318  Sum_probs=105.3

Q ss_pred             cEEEccCC--cccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            5 SDIRLTNN--RLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         5 ~~l~l~~~--~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +.+++++.  .++ .++..+. .+++|++|++++|.++ .++ .+..+++|+.|++++|.+. ..+..+..+++|+.|++
T Consensus        26 ~~~~l~~~~~~i~-~l~~sl~-~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          26 EKVELHGMIPPIE-KMDATLS-TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI  100 (198)
T ss_dssp             SCEECCBCCTTCC-CCHHHHH-HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEEC
T ss_pred             ceeeeecccCchh-hhhhHHh-cccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccc
Confidence            44455443  233 4555555 7899999999999998 444 5788899999999999887 45555555678999999


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCcc---------cccCCCccce
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPSR---------IDLSLPTVEV  152 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~---------~~~~~~~L~~  152 (155)
                      ++|.++. + +.+..+++|+.+++++|.++.... ..+..+++|+.+++++|++....+..         +...+|+|++
T Consensus       101 ~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~  178 (198)
T d1m9la_         101 SYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             SEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred             ccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCE
Confidence            9998873 2 456778899999999998876422 46788999999999999886332221         1256888888


Q ss_pred             ec
Q 036127          153 LD  154 (155)
Q Consensus       153 l~  154 (155)
                      ||
T Consensus       179 LD  180 (198)
T d1m9la_         179 LD  180 (198)
T ss_dssp             ES
T ss_pred             eC
Confidence            87

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=5.6e-14  Score=96.06  Aligned_cols=143  Identities=26%  Similarity=0.401  Sum_probs=111.1

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++++.+++++|.++ .+++. . .+++++.+++++|.++ .. +.+..+++++.+++.+|.+.. .+ .++.+++|+.+
T Consensus       196 l~~~~~l~l~~n~i~-~~~~~-~-~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L  268 (384)
T d2omza2         196 LTNLESLIATNNQIS-DITPL-G-ILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISN-LA-PLSGLTKLTEL  268 (384)
T ss_dssp             CTTCSEEECCSSCCC-CCGGG-G-GCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             ccccceeeccCCccC-CCCcc-c-ccCCCCEEECCCCCCC-Cc-chhhcccccchhccccCccCC-CC-cccccccCCEe
Confidence            357888999999998 55443 2 5789999999999988 33 467888999999999999874 33 37788899999


Q ss_pred             EeecccccccC--------------------chhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127           81 YLEYNKLHGEI--------------------PHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP  140 (155)
Q Consensus        81 ~l~~~~~~~~~--------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (155)
                      +++++.+++..                    ...+..++.++.+++.+|++++. + .+..+++|+++++++|.++ .++
T Consensus       269 ~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~  345 (384)
T d2omza2         269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS  345 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG
T ss_pred             eccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh
Confidence            99888765321                    12345567788888888888774 2 4788999999999999998 666


Q ss_pred             cccccCCCccceecC
Q 036127          141 SRIDLSLPTVEVLDC  155 (155)
Q Consensus       141 ~~~~~~~~~L~~l~l  155 (155)
                       .+ +.+++|++|++
T Consensus       346 -~l-~~l~~L~~L~l  358 (384)
T d2omza2         346 -SL-ANLTNINWLSA  358 (384)
T ss_dssp             -GG-GGCTTCCEEEC
T ss_pred             -hH-cCCCCCCEEEC
Confidence             35 78999999985

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.53  E-value=2.9e-16  Score=98.95  Aligned_cols=128  Identities=23%  Similarity=0.369  Sum_probs=101.3

Q ss_pred             CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127            1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI   80 (155)
Q Consensus         1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L   80 (155)
                      +++|+.|++++|.++ .++ .+. .+++|+.|++++|.++ .++..+..++.|+.|++++|.+.. . +.+..+++|+.|
T Consensus        47 L~~L~~L~Ls~n~I~-~i~-~l~-~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC-CHH-HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEE
T ss_pred             ccccceeECcccCCC-Ccc-ccc-CCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccccccc
Confidence            468999999999999 775 344 7899999999999998 556555556789999999999873 3 457788999999


Q ss_pred             EeecccccccCc-hhhhCCCCCceEEeeCccccccCCcc----------ccCCCCCcEEEccCCccc
Q 036127           81 YLEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVFPAA----------IFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        81 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~----------~~~~~~L~~l~l~~n~~~  136 (155)
                      ++++|.++.... ..+..+++|+.+++.+|++....+..          +..+++|+.||  +..++
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            999999974322 46788999999999999887643322          56789999886  45554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.5e-14  Score=85.13  Aligned_cols=107  Identities=20%  Similarity=0.227  Sum_probs=84.2

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCc-cccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKN-MFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY   81 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~   81 (155)
                      ..+.+++.++.++ .+|..+. .+++++.|+++++ .++...+.+|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~-~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCccccc-CccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3456788888888 7777766 7888999999765 47755566788899999999999998866677888899999999


Q ss_pred             eecccccccCchhhhCCCCCceEEeeCcccc
Q 036127           82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILV  112 (155)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  112 (155)
                      +++|+++ .+|........++.+++++|.+.
T Consensus        87 Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999988 55554444557889999988774

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-14  Score=94.67  Aligned_cols=152  Identities=20%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCc-CCCCc-chhhhCCCcccEE
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN-LSGAI-PKEIGNLTMLKGI   80 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~-~~~~~~~~~L~~L   80 (155)
                      +|+.|+++++.+++.....++..+++|++|.++++.++......+..+++|+.|+++++. ++... ...+..+++|+.|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            456666666655533333334455666666666665554444445555566666665542 22111 1112334555555


Q ss_pred             Eeeccc-----------------------------cccc-CchhhhCCCCCceEEeeCcc-ccccCCccccCCCCCcEEE
Q 036127           81 YLEYNK-----------------------------LHGE-IPHEIANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLM  129 (155)
Q Consensus        81 ~l~~~~-----------------------------~~~~-~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~  129 (155)
                      +++++.                             ++.. +......+++|+++++.+|. +++.....+..+++|++++
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            555431                             1111 11122346777777777653 5555555667778888888


Q ss_pred             ccCC-cccCCCCcccccCCCccceecC
Q 036127          130 LINN-SLSGSLPSRIDLSLPTVEVLDC  155 (155)
Q Consensus       130 l~~n-~~~~~~~~~~~~~~~~L~~l~l  155 (155)
                      +++| .+++.....+ +.+|+|+.|++
T Consensus       207 L~~C~~i~~~~l~~L-~~~~~L~~L~l  232 (284)
T d2astb2         207 LSRCYDIIPETLLEL-GEIPTLKTLQV  232 (284)
T ss_dssp             CTTCTTCCGGGGGGG-GGCTTCCEEEC
T ss_pred             CCCCCCCChHHHHHH-hcCCCCCEEee
Confidence            8775 5664444444 66777777764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.3e-13  Score=81.67  Aligned_cols=108  Identities=18%  Similarity=0.139  Sum_probs=90.3

Q ss_pred             CCccEEEccCccccccCCccccCCCCCcEEEcccC-cCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEE
Q 036127           27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN-NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLV  105 (155)
Q Consensus        27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  105 (155)
                      .....++.+++.+. ..|..+..+++++.|++.++ .++...+..|..+++|+.|++++|+++...+..+..+++|++++
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34566888888877 66788888999999999766 47755667899999999999999999977788899999999999


Q ss_pred             eeCccccccCCccccCCCCCcEEEccCCccc
Q 036127          106 LGMNILVGVFPAAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus       106 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (155)
                      +++|+++...+..+.. .+++.+++++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            9999999855555544 47999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-12  Score=84.03  Aligned_cols=105  Identities=20%  Similarity=0.219  Sum_probs=86.1

Q ss_pred             cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCc-chhhhCCCcccEEEee
Q 036127            5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI-PKEIGNLTMLKGIYLE   83 (155)
Q Consensus         5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~   83 (155)
                      +.+++++..++ .+|..++   ++++.|++++|.++...+.+|.++++|+++++++|.+.... +..|..++.++.+.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            57888888888 8998765   68999999999998555567899999999999999876433 4567888999999876


Q ss_pred             c-ccccccCchhhhCCCCCceEEeeCccccc
Q 036127           84 Y-NKLHGEIPHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        84 ~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                      . +.+....+..+..+++|+++++.+|.+..
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccchhhhcc
Confidence            4 56766667778899999999999997765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.7e-12  Score=83.17  Aligned_cols=100  Identities=19%  Similarity=0.186  Sum_probs=65.2

Q ss_pred             CCCcEEEcccCc--CCCC-cchhhhCCCcccEEEeecc-cccccCchhhhCCCCCceEEeeCc-cccccCCccccCCCCC
Q 036127           51 KQLQQLNLQFNN--LSGA-IPKEIGNLTMLKGIYLEYN-KLHGEIPHEIANLLNLEDLVLGMN-ILVGVFPAAIFNMSTL  125 (155)
Q Consensus        51 ~~L~~l~l~~~~--~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L  125 (155)
                      +.|+.+++.++.  ++.. ....+..+++|+.|+++++ .+++.....+..+++|+++++.+| .+++.....+..+++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            455555555432  2211 1122345789999999886 466667778888999999999996 5766555677889999


Q ss_pred             cEEEccCCcccCCCCcccccCCCccc
Q 036127          126 KVLMLINNSLSGSLPSRIDLSLPTVE  151 (155)
Q Consensus       126 ~~l~l~~n~~~~~~~~~~~~~~~~L~  151 (155)
                      +.++++++ +++..-..+...+|+|+
T Consensus       228 ~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         228 KTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             CEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            99999887 43222222224466554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.04  E-value=4.8e-09  Score=70.22  Aligned_cols=119  Identities=26%  Similarity=0.331  Sum_probs=85.5

Q ss_pred             CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127            3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL   82 (155)
Q Consensus         3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l   82 (155)
                      +++.|++++++++ .+|+    .++++++|++++|.++ .+|..   ..+|+.|++.+|.+. ..+..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            5789999999998 7884    3578999999999998 66654   357899999998877 33321   246899999


Q ss_pred             ecccccccCchhhhCCCCCceEEeeCccccccCC------------------ccccCCCCCcEEEccCCccc
Q 036127           83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP------------------AAIFNMSTLKVLMLINNSLS  136 (155)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~------------------~~~~~~~~L~~l~l~~n~~~  136 (155)
                      ++|.+. .+|. ...++.|+++++.++.+.....                  ..+..++.++.+.+.+|...
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            999887 4554 4678899999998886654211                  12334455666666666555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.96  E-value=1.1e-10  Score=78.75  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=18.8

Q ss_pred             CCccEEEccCCccccc----CCchhhcCCCCccEEEccCccc
Q 036127            2 SSISDIRLTNNRLSGE----LPKNIGSYLPYLKALFLDKNMF   39 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~----~~~~~~~~l~~l~~l~l~~n~~   39 (155)
                      ++|+.|++++|.+++.    +...+. ..++++.|++++|.+
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCC
T ss_pred             CCcccccccccccccccccchhhhhc-ccccchheecccccc
Confidence            4566666666665532    111111 345666666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.91  E-value=1.3e-10  Score=78.38  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             CCCccEEEccCcccccc----CCccccCCCCCcEEEcccCcCCCC-----cchhhhCCCcccEEEeeccccccc----Cc
Q 036127           26 LPYLKALFLDKNMFHGK----IPSALSKCKQLQQLNLQFNNLSGA-----IPKEIGNLTMLKGIYLEYNKLHGE----IP   92 (155)
Q Consensus        26 l~~l~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~   92 (155)
                      .+.++.+.+++|.+...    ....+..++.++.++++.|.+...     ....+...++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34555666665554321    111233445566666666555421     111233445566666665554322    12


Q ss_pred             hhhhCCCCCceEEeeCccccccCC----ccccC--CCCCcEEEccCCccc
Q 036127           93 HEIANLLNLEDLVLGMNILVGVFP----AAIFN--MSTLKVLMLINNSLS  136 (155)
Q Consensus        93 ~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~--~~~L~~l~l~~n~~~  136 (155)
                      ..+..++.|+.+++++|.+++...    ..+..  .+.++.+++++|.++
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            333445556666666665543211    11111  234556666665554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.88  E-value=1.2e-08  Score=68.20  Aligned_cols=100  Identities=28%  Similarity=0.328  Sum_probs=78.5

Q ss_pred             CCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEe
Q 036127           27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVL  106 (155)
Q Consensus        27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  106 (155)
                      .+++.|+++++.++ .+|+.   .++|++|++++|.++ ..|..   +.+|+.|++.+|.++ .++..   .+.|+++++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            36889999999998 66753   468999999999998 56654   458999999999887 33422   246999999


Q ss_pred             eCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127          107 GMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS  141 (155)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  141 (155)
                      ++|.+.. +| .+..+++|+.++++++.+. ..+.
T Consensus       106 ~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~-~~~~  137 (353)
T d1jl5a_         106 SNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPD  137 (353)
T ss_dssp             CSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCC
T ss_pred             ccccccc-cc-chhhhccceeecccccccc-cccc
Confidence            9999887 55 3577899999999999887 4443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2e-10  Score=79.58  Aligned_cols=112  Identities=22%  Similarity=0.226  Sum_probs=81.0

Q ss_pred             CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccc----cCCccccCCCCCcEEEcccCcCCCCcchh----hh-
Q 036127            2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG----KIPSALSKCKQLQQLNLQFNNLSGAIPKE----IG-   72 (155)
Q Consensus         2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~----~~-   72 (155)
                      .+|+.|+++++.+++.--..+...+++++++++++|.++.    .+..++..+++|+.|++++|.++......    +. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3689999999999843223334467899999999998873    22345678899999999999875322112    21 


Q ss_pred             CCCcccEEEeeccccccc----CchhhhCCCCCceEEeeCccccc
Q 036127           73 NLTMLKGIYLEYNKLHGE----IPHEIANLLNLEDLVLGMNILVG  113 (155)
Q Consensus        73 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~  113 (155)
                      ...+|+.|++++|.+++.    ++..+..+++|+.+++.+|.++.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            234799999999988744    34556778899999999997754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.9e-10  Score=78.02  Aligned_cols=85  Identities=20%  Similarity=0.160  Sum_probs=35.9

Q ss_pred             CCcEEEcccCcCCCCcch----hhhCCCcccEEEeecccccccC----chhhh-CCCCCceEEeeCcccccc----CCcc
Q 036127           52 QLQQLNLQFNNLSGAIPK----EIGNLTMLKGIYLEYNKLHGEI----PHEIA-NLLNLEDLVLGMNILVGV----FPAA  118 (155)
Q Consensus        52 ~L~~l~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~l~l~~~~~~~~----~~~~  118 (155)
                      .|+.+.++++.+......    .+...++|+.|++++|.+++..    +..+. ..+.|+.|++++|.++..    +...
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence            455555555544422211    1222334555555555543211    11221 233455555555555431    1122


Q ss_pred             ccCCCCCcEEEccCCccc
Q 036127          119 IFNMSTLKVLMLINNSLS  136 (155)
Q Consensus       119 ~~~~~~L~~l~l~~n~~~  136 (155)
                      +..+++|++|++++|.++
T Consensus       393 l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHCCCCCEEECCSSSCC
T ss_pred             HhcCCCCCEEECCCCcCC
Confidence            334455555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.7e-10  Score=68.96  Aligned_cols=83  Identities=27%  Similarity=0.184  Sum_probs=48.7

Q ss_pred             hCCCcccEEEeecccccccC--chhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCc------cc
Q 036127           72 GNLTMLKGIYLEYNKLHGEI--PHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS------RI  143 (155)
Q Consensus        72 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~------~~  143 (155)
                      ..+++|+.|++++|.++...  +..+..+++|+.+++++|.++...+-.......++.+++.+|+++.....      .+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            45667777777777766332  23455667777777777777664332233344567777777777633221      22


Q ss_pred             ccCCCccceec
Q 036127          144 DLSLPTVEVLD  154 (155)
Q Consensus       144 ~~~~~~L~~l~  154 (155)
                      +..+|+|++||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            25567777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8.7e-10  Score=66.70  Aligned_cols=88  Identities=27%  Similarity=0.186  Sum_probs=63.0

Q ss_pred             cccCCCCCcEEEcccCcCCCCc--chhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCC-------
Q 036127           46 ALSKCKQLQQLNLQFNNLSGAI--PKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-------  116 (155)
Q Consensus        46 ~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-------  116 (155)
                      .+..++.|++|++++|.++...  +..+..+++|+.|++++|.++...+-.......++.+++.+|+++....       
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            3456788999999999987432  3456778999999999999884333233344578999999998876433       


Q ss_pred             ccccCCCCCcEEEccCCcc
Q 036127          117 AAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus       117 ~~~~~~~~L~~l~l~~n~~  135 (155)
                      ..+..+|+|+.||  +..+
T Consensus       140 ~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         140 AIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHTTSTTCCEET--TEEC
T ss_pred             HHHHHCCCCCEEC--cCCC
Confidence            2356788998885  4444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.13  E-value=1.4e-06  Score=52.50  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             CCCCccEEEccCc-ccccc----CCccccCCCCCcEEEcccCcCCCC----cchhhhCCCcccEEEeecccccccC----
Q 036127           25 YLPYLKALFLDKN-MFHGK----IPSALSKCKQLQQLNLQFNNLSGA----IPKEIGNLTMLKGIYLEYNKLHGEI----   91 (155)
Q Consensus        25 ~l~~l~~l~l~~n-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----   91 (155)
                      ..+.++.|+++++ .+...    +..++...+.|+.|++++|.+...    ....+...+.|+.|++++|.++...    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4577888888763 34421    223455567788888888877632    2234445677888888888776433    


Q ss_pred             chhhhCCCCCceEEeeCcccccc-------CCccccCCCCCcEEEccCCcc
Q 036127           92 PHEIANLLNLEDLVLGMNILVGV-------FPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        92 ~~~~~~~~~L~~l~l~~~~~~~~-------~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      ...+...++|+++++.+|.+...       +...+...++|+.++++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            23445567788888887754321       233445567888888866543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=9.7e-06  Score=48.65  Aligned_cols=110  Identities=11%  Similarity=0.130  Sum_probs=74.6

Q ss_pred             CCccEEEccCC-cccccCCchh---hcCCCCccEEEccCcccccc----CCccccCCCCCcEEEcccCcCCCCcc----h
Q 036127            2 SSISDIRLTNN-RLSGELPKNI---GSYLPYLKALFLDKNMFHGK----IPSALSKCKQLQQLNLQFNNLSGAIP----K   69 (155)
Q Consensus         2 ~~l~~l~l~~~-~~~~~~~~~~---~~~l~~l~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~   69 (155)
                      ++|+.|+++++ .++.+.-..+   ....+.++.|++++|.+...    +...+...+.|+.|++++|.+.....    .
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            57999999874 4553211112   22567899999999988632    22345567899999999999874322    2


Q ss_pred             hhhCCCcccEEEeeccccccc-------CchhhhCCCCCceEEeeCccc
Q 036127           70 EIGNLTMLKGIYLEYNKLHGE-------IPHEIANLLNLEDLVLGMNIL  111 (155)
Q Consensus        70 ~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~l~l~~~~~  111 (155)
                      .+...++|+.|++.+|.....       +...+...+.|+.++++.+..
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            355567899999998865422       234455568899998876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.39  E-value=3.2e-05  Score=46.20  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=68.8

Q ss_pred             CCCCccEEEccC-cccccc----CCccccCCCCCcEEEcccCcCCCCcc----hhhhCCCcccEEEeecccccccC----
Q 036127           25 YLPYLKALFLDK-NMFHGK----IPSALSKCKQLQQLNLQFNNLSGAIP----KEIGNLTMLKGIYLEYNKLHGEI----   91 (155)
Q Consensus        25 ~l~~l~~l~l~~-n~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----   91 (155)
                      ..++++.+++++ +.++..    +..++...++|+.|++++|.+.....    ..+...++++.+++.++.+....    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            567888888876 445421    22344566788888888887763322    23445677888888888765432    


Q ss_pred             chhhhCCCCCceEEee--Ccccccc----CCccccCCCCCcEEEccCCcc
Q 036127           92 PHEIANLLNLEDLVLG--MNILVGV----FPAAIFNMSTLKVLMLINNSL  135 (155)
Q Consensus        92 ~~~~~~~~~L~~l~l~--~~~~~~~----~~~~~~~~~~L~~l~l~~n~~  135 (155)
                      ...+...++++.+++.  +|.+...    +...+...+.|+.|++..+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2444556777765554  4555432    234455678888888876644

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.29  E-value=3.7e-05  Score=45.87  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=73.9

Q ss_pred             CCccEEEccC-CcccccCCchhh---cCCCCccEEEccCccccccC----CccccCCCCCcEEEcccCcCCCCc----ch
Q 036127            2 SSISDIRLTN-NRLSGELPKNIG---SYLPYLKALFLDKNMFHGKI----PSALSKCKQLQQLNLQFNNLSGAI----PK   69 (155)
Q Consensus         2 ~~l~~l~l~~-~~~~~~~~~~~~---~~l~~l~~l~l~~n~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~----~~   69 (155)
                      +.|+.|++++ +.++...-..+.   ...++++.|++++|.++...    ...+.....++.+++.++.+....    ..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            6789999987 456532221222   36789999999999886322    234556789999999999886332    23


Q ss_pred             hhhCCCcccEEEee--ccccccc----CchhhhCCCCCceEEeeCccc
Q 036127           70 EIGNLTMLKGIYLE--YNKLHGE----IPHEIANLLNLEDLVLGMNIL  111 (155)
Q Consensus        70 ~~~~~~~L~~L~l~--~~~~~~~----~~~~~~~~~~L~~l~l~~~~~  111 (155)
                      .+...++++.+++.  +|.+...    +...+...++|+.+++..+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            45566788876664  5566432    344556788999999987754