Citrus Sinensis ID: 036133

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MAASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEKIT
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccccHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maasssssscnydvflsfrgedtrvsFTCHLYynlnertkiktfiddeevrrgdeisPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILEckhtngqivipvfysvspsdvrhqtgsfghgfDQLKQQFKEKPEMVQKWRGALIEtshlaghestkfrhDAQLVSKIVEDVLKKMEKIT
Flexible Loop (DISEMBL)
maasssssscnYDVFLSFRGEDTRVSFTCHlyynlnertkiktfiddeevrrgDEISPallnaiegskISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLaghestkfrhdaqlvSKIVEDVLKKMEKIT
Low Complexity Region (SEG)
MAAssssssCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEKIT
Disordered region (IsUnstruct)
*********CNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRH**GSFGHGF*************VQKWRGALIETSHLAG*****FRHDAQLVSKIVE**********
Disordered Region (DISOPRED)
*********CNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ*****EMV*KWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEKI*
Disordered Region (DISEMBL)
**********NYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEKIT
Disordered Region (DISPRO)
*******SSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEKIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.994	0.158	0.494	5e-41
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.945	0.132	0.474	5e-37
O82500	1095	Putative disease resistan	no	no	0.945	0.157	0.460	9e-34
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.983	0.505	0.376	4e-27
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.747	0.330	0.410	1e-20
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.785	0.364	0.422	2e-20
Q9SYC9	571	Vesicle-associated protei	no	no	0.725	0.231	0.377	1e-19
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.785	0.075	0.263	9e-08
Q9FL92	1372	Probable WRKY transcripti	no	no	0.697	0.092	0.286	1e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  166 bits (421), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 126/182 (69%), Gaps = 1/182 (0%)

Query: 1   MAASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPAL 60
           MA+SSSSS  +YDVFLSFRGEDTR +FT HLY  LN++  IKTF DD+ +  G  I   L
Sbjct: 1   MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKG-IKTFQDDKRLEYGATIPGEL 59

Query: 61  LNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGS 120
             AIE S+ ++V+FS++YA+S+WCLNELVKI+ECK    Q VIP+FY V PS VR+Q  S
Sbjct: 60  CKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKES 119

Query: 121 FGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEK 180
           F   F++ + ++K+  E +Q+WR AL E ++L G    + + DA  + +IV+ +  K+ K
Sbjct: 120 FAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKLCK 179

Query: 181 IT 182
           I+
Sbjct: 180 IS 181

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  153 bits (387), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 115/177 (64%), Gaps = 5/177 (2%)

Query: 1   MAASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPAL 60
           M  +SSS S  YDVF SFRGED R SF  HL   L  R K  TFIDDE + R   I P L
Sbjct: 1   MEIASSSGSRRYDVFPSFRGEDVRDSFLSHLLKEL--RGKAITFIDDE-IERSRSIGPEL 57

Query: 61  LNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGS 120
           L+AI+ S+I++VIFSK+YASS WCLNELV+I +C     Q+VIP+F+ V  S+V+ QTG 
Sbjct: 58  LSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGE 117

Query: 121 FGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKK 177
           FG  F++  +   E  +  Q W+ AL   + +AG++  K+  +A ++ ++ EDVL+K
Sbjct: 118 FGKVFEETCKAKSEDEK--QSWKQALAAVAVMAGYDLRKWPSEAAMIEELAEDVLRK 172

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  142 bits (359), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 81/176 (46%), Positives = 109/176 (61%), Gaps = 4/176 (2%)

Query: 3   ASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLN 62
           ASSSS+S  YDVF SFRGED R +F  HL     E   I TF DD  ++R   I   L  
Sbjct: 2   ASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEF-ESKGIVTFRDDH-IKRSHTIGHELRA 59

Query: 63  AIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFG 122
           AI  SKISVV+FS++YASS WCL+EL++I++CK   G  V+PVFY V PSD+R QTG FG
Sbjct: 60  AIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFG 119

Query: 123 HGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
             F  L+    +  E    WR AL + +++ G     + ++A  ++ I +DVL+K+
Sbjct: 120 MSF--LETCCGKTEERQHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVLEKL 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 7/186 (3%)

Query: 1   MAASSS--SSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISP 58
           MAASSS   +     VF++FRG+D R  F   L   + E   I  FID +EV   D ++ 
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMRE-ANINVFIDKDEVVGTDLVN- 58

Query: 59  ALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQT 118
            L   I+ S+++VVIFSKDY SS+WCL+EL +I +C +  G   IP+FY ++PS V    
Sbjct: 59  -LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELK 117

Query: 119 GSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKF--RHDAQLVSKIVEDVLK 176
           G FG  F  LK+++K  PE  QKW+ AL     L G    +   R++ + +++++ ++ K
Sbjct: 118 GGFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGLRLAEKSDRNEREFMNEMILEIQK 177

Query: 177 KMEKIT 182
            + +I 
Sbjct: 178 ALWQIA 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 3/139 (2%)

Query: 14  VFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVI 73
           VF++FRG+D R  F   L   L ++ KI  FID++E R    IS  L + I  SKI++VI
Sbjct: 24  VFINFRGKDLRKGFMSFLKPAL-KKEKINVFIDEQEERGKYLIS--LFDTIGESKIALVI 80

Query: 74  FSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFK 133
           FS+ Y  S WC++ELVKI E    N  I+IP+FY +    V+  TG FG  F  L  +++
Sbjct: 81  FSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQ 140

Query: 134 EKPEMVQKWRGALIETSHL 152
            +P+ + KW  AL     L
Sbjct: 141 PEPKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 81/149 (54%), Gaps = 6/149 (4%)

Query: 1   MAASSS---SSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEIS 57
           MA+SSS    +     VF+ FRG D R  F   L   L E   I  FID+ E   G E++
Sbjct: 1   MASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALRE-ANINVFIDENEFL-GSEMA 58

Query: 58  PALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQ 117
             LL  IE S++++VIFS D+  S  CLNEL KI E K     IVIP+FY V PS V+  
Sbjct: 59  -NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFL 117

Query: 118 TGSFGHGFDQLKQQFKEKPEMVQKWRGAL 146
            G FG  F  L++  +    + QKW+ AL
Sbjct: 118 EGKFGDNFRALERNNRHMLPITQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 3/135 (2%)

Query: 12  YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
           Y VF++FRG++ R SF   L   +    KI  F D+ E+R G  ++  L   IE S+++V
Sbjct: 358 YQVFINFRGDELRNSFVGFLVKAM-RLEKINVFTDEVELR-GTNLN-YLFRRIEESRVAV 414

Query: 72  VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
            IFS+ Y  S WCL+ELVK+ E       +V+PVFY ++ +  +   G+FG     L+ +
Sbjct: 415 AIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWE 474

Query: 132 FKEKPEMVQKWRGAL 146
           ++ +PE +QKW+ AL
Sbjct: 475 YRSEPERIQKWKEAL 489

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 28/171 (16%)

Query: 7   SSSCNYDVFLSF-RGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIE 65
           SSS +YDV + + R + +   F  HL  +L  R  I  +    EV           +A+ 
Sbjct: 663 SSSKDYDVVIRYGRADISNEDFISHLRASLCRR-GISVYEKFNEV-----------DALP 710

Query: 66  GSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGF 125
             ++ +++ +  Y  S      L+ ILE +HT  ++V P+FY +SP D    + ++   +
Sbjct: 711 KCRVLIIVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCNSKNYERFY 765

Query: 126 DQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLK 176
                  +++P   +KW+ AL E + + G+  T  + +++L+ +IV D LK
Sbjct: 766 ------LQDEP---KKWQAALKEITQMPGYTLTD-KSESELIDEIVRDALK 806

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 37/164 (22%)

Query: 21  EDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYAS 80
           E+ R SF  HL   L  +     FID +     D +S    + +E +++SV+I   +   
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD-----DSLSNESQSMVERARVSVMILPGNRTV 68

Query: 81  SKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQ 140
           S   L++LVK+L+C+    Q+V+PV Y V  S+                           
Sbjct: 69  S---LDKLVKVLDCQKNKDQVVVPVLYGVRSSET-------------------------- 99

Query: 141 KWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKK---MEKI 181
           +W  AL      + H S K   D+QLV + V DV +K   ME+I
Sbjct: 100 EWLSALDSKGFSSVHHSRKECSDSQLVKETVRDVYEKLFYMERI 143

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
357462143	1133	TIR-NBS-LRR type disease resistance prot	0.906	0.145	0.586	8e-50
351722793	299	TIR-NBS-LRR type disease resistance prot	0.972	0.591	0.525	2e-49
105923218	1617	TIR-NBS-LRR type disease resistance prot	0.917	0.103	0.582	2e-49
357462141	1545	Tir-nbs-lrr resistance protein [Medicago	0.917	0.108	0.573	1e-48
224150338	186	predicted protein [Populus trichocarpa]	0.917	0.897	0.576	3e-48
224123354	522	tir-nbs-lrr resistance protein [Populus	0.961	0.335	0.556	1e-47
224144414	520	tir-nbs-lrr resistance protein [Populus	0.901	0.315	0.561	2e-47
357449525	1128	TMV resistance protein N [Medicago trunc	0.972	0.156	0.532	3e-47
224145716	532	tir-nbs-lrr resistance protein [Populus	0.950	0.325	0.538	3e-47
124359513	1230	TIR [Medicago truncatula]	0.972	0.143	0.532	4e-47

>gi|357462143|ref|XP_003601353.1| TIR-NBS-LRR type disease resistance protein [Medicago truncatula] gi|355490401|gb|AES71604.1| TIR-NBS-LRR type disease resistance protein [Medicago truncatula]

 Score =  201 bits (512), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 127/167 (76%), Gaps = 2/167 (1%)

Query: 12  YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
           +DVF+SFRGEDTR +FT HLY  L++  K+ TFIDD E+ +GDEIS AL+ AIE S  S+
Sbjct: 83  FDVFISFRGEDTRRNFTSHLYEALSK--KVITFIDDNELEKGDEISSALIKAIEKSSASI 140

Query: 72  VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
           VIFSKDYASSKWCLNELVKILECK  NGQIVIPVFY + PS VR+Q GS+   F++ +Q 
Sbjct: 141 VIFSKDYASSKWCLNELVKILECKKDNGQIVIPVFYEIDPSHVRNQKGSYMLAFEKHEQD 200

Query: 132 FKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
            K+  + +QKW+ AL E ++LAG  S  +++D+  +  I+EDVLKK+
Sbjct: 201 LKQSKDKLQKWKDALTEAANLAGWYSQNYKNDSIFIKYIIEDVLKKL 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/179 (52%), Positives = 133/179 (74%), Gaps = 2/179 (1%)

Query: 4   SSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNA 63
           +S +    +DVFLSFRGEDTR +FT HLY  L  R ++KT+ID+E + RGDEISP+LL A
Sbjct: 11  TSKTPQQVHDVFLSFRGEDTRYTFTSHLYAALT-RLQVKTYIDNE-LERGDEISPSLLRA 68

Query: 64  IEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGH 123
           I+ +K++V++FS++YASS+WCL+ELVKI+ECK  NGQI++PVFY V P+ VRHQTGS+GH
Sbjct: 69  IDDAKVAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVRHQTGSYGH 128

Query: 124 GFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEKIT 182
            F   +Q+F      VQ WR  L E ++++G +    R +++LV KI  D+L+K++ IT
Sbjct: 129 AFAMHEQRFVGNMNKVQTWRLVLGEVANISGWDCLTTRVESELVEKIAMDILQKLDSIT 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/170 (58%), Positives = 129/170 (75%), Gaps = 3/170 (1%)

Query: 11  NYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKIS 70
            YDVFLSFRGEDTR +FT HLY  L+   +I  F DD+E+RRG+EIS  LL AI+ SKIS
Sbjct: 255 GYDVFLSFRGEDTRKNFTDHLYTALHH-ARIHAFRDDDELRRGEEISLQLLKAIQESKIS 313

Query: 71  VVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQ 130
           +V+FSK YASS WCL EL KIL+C+HT GQIV+PVFY + PSD+R QTGSF   FD+ ++
Sbjct: 314 IVVFSKGYASSTWCLAELEKILDCRHTTGQIVLPVFYDIDPSDIRKQTGSFAEAFDRHEE 373

Query: 131 QFKEKPEMVQKWRGALIETSHLAGHESTKFR--HDAQLVSKIVEDVLKKM 178
           +FKE+ E VQKWR AL+E ++L+G +   F   H+++L+ KIVE+V  K+
Sbjct: 374 RFKEEMEKVQKWRKALMEAANLSGLDLRSFANGHESKLIQKIVEEVSSKL 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462141|ref|XP_003601352.1| Tir-nbs-lrr resistance protein [Medicago truncatula] gi|355490400|gb|AES71603.1| Tir-nbs-lrr resistance protein [Medicago truncatula]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 123/169 (72%), Gaps = 2/169 (1%)

Query: 12  YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
           +DVF+SF GEDT   FT HLY  L++  KI TFIDD E+ +GDEIS AL+ AIE S  S+
Sbjct: 457 FDVFISFCGEDTGRKFTSHLYEALSK--KIITFIDDNELEKGDEISSALIKAIEDSSASI 514

Query: 72  VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
           VIFSKDYASSKWCLNELVKILECK   GQIVIP+FY + PS VR+Q GS+G  F +  + 
Sbjct: 515 VIFSKDYASSKWCLNELVKILECKKDQGQIVIPIFYEIDPSHVRNQNGSYGQAFAKHARD 574

Query: 132 FKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEK 180
            K+  EM++KW+ AL E ++LAG  S  +R ++  +  IVEDVLKK+ +
Sbjct: 575 LKQNKEMLKKWKDALTEAANLAGWHSQNYRIESNFIKDIVEDVLKKLNR 623

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224150338|ref|XP_002336941.1| predicted protein [Populus trichocarpa] gi|222837191|gb|EEE75570.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 129/170 (75%), Gaps = 3/170 (1%)

Query: 11  NYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKIS 70
           +YDVFLSFRGEDTR +FT HL+  L ++ K++TF DD+E+R G+EIS  L  AI+ SKIS
Sbjct: 13  DYDVFLSFRGEDTRKNFTDHLFTAL-QKAKVRTFRDDDELRIGEEISLQLPKAIQESKIS 71

Query: 71  VVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQ 130
           +V+FSK YASS WCL+EL KIL+CKHT GQIVIPVFY + PSD+R QTGSF   FD+ ++
Sbjct: 72  IVVFSKGYASSTWCLDELEKILDCKHTTGQIVIPVFYDIDPSDIRKQTGSFAEAFDKHEE 131

Query: 131 QFKEKPEMVQKWRGALIETSHLAGHE--STKFRHDAQLVSKIVEDVLKKM 178
           +FKE+ E V KWR AL+E + L+G +  S    H+++L+ KIVE V  K+
Sbjct: 132 RFKEEMEKVHKWRKALVEAADLSGLDPHSIANGHESKLIQKIVEVVSSKL 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123354|ref|XP_002319058.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222857434|gb|EEE94981.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/178 (55%), Positives = 130/178 (73%), Gaps = 3/178 (1%)

Query: 3   ASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLN 62
           +SSS    +YDVFLSFRGEDTR +FT HLY  L +   I TF DD E+ +G+EIS  LL 
Sbjct: 1   SSSSRLGWHYDVFLSFRGEDTRKNFTDHLYTAL-QNAGIHTFRDDNELPKGEEISSHLLK 59

Query: 63  AIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFG 122
           AI+ SKIS+V+FSK YASS WCL+EL +IL+C+ T GQIV+PVFY + PSD+R QTGSF 
Sbjct: 60  AIKESKISIVVFSKGYASSTWCLDELSEILDCRQTAGQIVLPVFYDIDPSDIRKQTGSFA 119

Query: 123 HGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHE--STKFRHDAQLVSKIVEDVLKKM 178
             FD+ +++FKE+ E VQKWR AL+E   L+G +  S    H+++L+  IVE+VL K+
Sbjct: 120 EAFDRHEERFKEEMEKVQKWRKALVEAGRLSGLDLHSIANGHESKLIQMIVEEVLSKL 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144414|ref|XP_002325282.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862157|gb|EEE99663.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 125/171 (73%), Gaps = 7/171 (4%)

Query: 12  YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
           YDVFLSFRGEDTR +FT HLY  L     I TF DD E+ RG+EISP LL AIEGS+IS+
Sbjct: 1   YDVFLSFRGEDTRKNFTDHLYTALGN-AGIHTFRDDNELPRGEEISPQLLKAIEGSRISI 59

Query: 72  VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
           V+FSK YASS+WCL+ELVKI+EC+   GQ+V+P+FY   PSDVR QTGS+   FD+ +++
Sbjct: 60  VVFSKHYASSRWCLDELVKIIECRQKIGQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEER 119

Query: 132 FKEKPEMVQKWRGALIETSHLAG----HESTKFRHDAQLVSKIVEDVLKKM 178
           FKE+ E V KWRGAL E  +L+G    +E+  +  +A+ + +IV DV  K+
Sbjct: 120 FKEEMEKVNKWRGALAEAGNLSGWGLHNEANGY--EAEFIKRIVSDVACKL 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449525|ref|XP_003595039.1| TMV resistance protein N [Medicago truncatula] gi|355484087|gb|AES65290.1| TMV resistance protein N [Medicago truncatula]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 133/182 (73%), Gaps = 5/182 (2%)

Query: 1   MAASSSSS----SCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEI 56
           + ASSSS+    S ++DVF+SFRG+DTR  FT HL   L +++ +KTFIDD E+++GDEI
Sbjct: 7   IGASSSSTLEVASNSFDVFISFRGDDTRRKFTSHLNEAL-KKSGLKTFIDDNELKKGDEI 65

Query: 57  SPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRH 116
           S AL+ AIE S  S+VI S++YASSKWCLNELVKILECK  NGQIVIP+FY + PS VR+
Sbjct: 66  SSALIKAIEESCASIVILSENYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRY 125

Query: 117 QTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLK 176
           Q GS+G  F + ++  + K + +QKW+ AL E S L+G +S   R ++  +  IV+DVL+
Sbjct: 126 QIGSYGQAFAKYEKNLRHKKDNLQKWKDALTEVSKLSGWDSKNSRIESDFIKDIVKDVLE 185

Query: 177 KM 178
           K+
Sbjct: 186 KL 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145716|ref|XP_002325741.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|224145719|ref|XP_002325742.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862616|gb|EEF00123.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862617|gb|EEF00124.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 129/180 (71%), Gaps = 7/180 (3%)

Query: 3   ASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLN 62
           +SSS    NYDVFLSFRG+DTR +FT HLY  L +   I TF DD E+ RG+EISP L+ 
Sbjct: 1   SSSSRHRWNYDVFLSFRGKDTRKNFTDHLYTALIQ-AGIHTFRDDNELPRGEEISPQLVK 59

Query: 63  AIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFG 122
           AIEGS+IS+V+FSK YASS+WCL+ELVKI+EC+    Q+V+P+FY   PSDVR QTGS+ 
Sbjct: 60  AIEGSRISIVVFSKQYASSRWCLDELVKIVECRQKIDQVVLPIFYDTEPSDVRKQTGSYA 119

Query: 123 HGFDQLKQQFKEKPEMVQKWRGALIETSHLAG----HESTKFRHDAQLVSKIVEDVLKKM 178
             FD+ ++ FKE+ E V KWRGAL E  +L+G    +E+  +  +A+ + +IV DV  K+
Sbjct: 120 KAFDEHEEHFKEEMEKVNKWRGALAEAGNLSGWGLNNEANGY--EAEFIKRIVSDVACKL 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359513|gb|ABN05946.1| TIR [Medicago truncatula]

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 133/182 (73%), Gaps = 5/182 (2%)

Query: 1   MAASSSSS----SCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEI 56
           + ASSSS+    S ++DVF+SFRG+DTR  FT HL   L +++ +KTFIDD E+++GDEI
Sbjct: 109 IGASSSSTLEVASNSFDVFISFRGDDTRRKFTSHLNEAL-KKSGLKTFIDDNELKKGDEI 167

Query: 57  SPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRH 116
           S AL+ AIE S  S+VI S++YASSKWCLNELVKILECK  NGQIVIP+FY + PS VR+
Sbjct: 168 SSALIKAIEESCASIVILSENYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRY 227

Query: 117 QTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLK 176
           Q GS+G  F + ++  + K + +QKW+ AL E S L+G +S   R ++  +  IV+DVL+
Sbjct: 228 QIGSYGQAFAKYEKNLRHKKDNLQKWKDALTEVSKLSGWDSKNSRIESDFIKDIVKDVLE 287

Query: 177 KM 178
           K+
Sbjct: 288 KL 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.994	0.158	0.467	4e-38
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.901	0.206	0.482	9.1e-34
TAIR|locus:2115870	1234	AT4G08450 [Arabidopsis thalian	0.890	0.131	0.465	1.8e-33
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.939	0.139	0.485	2.9e-33
TAIR|locus:2028681	1161	AT1G31540 [Arabidopsis thalian	0.939	0.147	0.452	3.4e-33
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.879	0.122	0.491	8.6e-33
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.884	0.164	0.473	1.4e-32
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.857	0.120	0.457	1.4e-32
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.967	0.121	0.455	2.1e-32
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.868	0.133	0.457	3.2e-32

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 420 (152.9 bits), Expect = 4.0e-38, P = 4.0e-38
 Identities = 85/182 (46%), Positives = 121/182 (66%)

Query:     1 MAAXXXXXXCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPAL 60
             MA+       +YDVFLSFRGEDTR +FT HLY  LN++  IKTF DD+ +  G  I   L
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKG-IKTFQDDKRLEYGATIPGEL 59

Query:    61 LNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGS 120
               AIE S+ ++V+FS++YA+S+WCLNELVKI+ECK    Q VIP+FY V PS VR+Q  S
Sbjct:    60 CKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKES 119

Query:   121 FGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEK 180
             F   F++ + ++K+  E +Q+WR AL E ++L G    + + DA  + +IV+ +  K+ K
Sbjct:   120 FAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKLCK 179

Query:   181 IT 182
             I+
Sbjct:   180 IS 181

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 9.1e-34, P = 9.1e-34
 Identities = 81/168 (48%), Positives = 108/168 (64%)

Query:    11 NYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKIS 70
             +YDVF +FRGED R S   HL   L +R  I TF +D  + R  +I+P LL AIE S+IS
Sbjct:     8 SYDVFPNFRGEDVRHSLVSHLRKEL-DRKFINTF-NDNRIERSRKITPELLLAIENSRIS 65

Query:    71 VVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQ 130
             +V+FSK+YASS WCL+ELVKI EC     Q+VIP+FY V PS VR QTG FG  F +  +
Sbjct:    66 LVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGMVFGETCK 125

Query:   131 QFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
                E  +  +KW  AL E +HLAG +   +R +A+++  I +DV  K+
Sbjct:   126 GRTENEK--RKWMRALAEVAHLAGEDLRNWRSEAEMLENIAKDVSNKL 171

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 1.8e-33, P = 1.8e-33
 Identities = 80/172 (46%), Positives = 111/172 (64%)

Query:    12 YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
             YDVF SF GED RV+F  H    L +R  I  F  D E+ RG+ I   L+ AI+ S+I+V
Sbjct:    11 YDVFTSFSGEDIRVTFLTHFLKEL-DRKMIIAF-KDNEIERGNSIGTELIQAIKDSRIAV 68

Query:    72 VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
             V+FSK Y+SS WCLNELV+I+ CK    +IVIPVFY + PSDVR Q G FG  F   K+ 
Sbjct:    69 VVFSKKYSSSSWCLNELVEIVNCK----EIVIPVFYDLDPSDVRKQEGEFGESF---KET 121

Query:   132 FKEKPEM-VQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEKIT 182
              K + +  +Q+W  AL   +++AG+ + K  ++A+L+ +I  DVL K+ K+T
Sbjct:   122 CKNRTDYEIQRWGQALTNVANIAGYHTRKPNNEAKLIEEITNDVLDKLMKLT 173

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 2.9e-33, P = 2.9e-33
 Identities = 86/177 (48%), Positives = 107/177 (60%)

Query:     3 AXXXXXXCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLN 62
             A        YDVF SF GED R SF  HL   L+ R  I TFID+  + R   I+P LL+
Sbjct:     2 ASSSSRSWTYDVFPSFSGEDVRKSFLSHLLKKLH-RKSINTFIDNN-IERSHAIAPDLLS 59

Query:    63 AIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFG 122
             AI  S IS+V+FSK YASS WCLNELV+I +C     QIVIP+FY V PSDVR QT  FG
Sbjct:    60 AINNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQTREFG 119

Query:   123 HGFDQLKQQFKEKPEMV-QKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
               F   K     K E V Q+W  AL E + +AGH+S  + ++A ++  I +DVL K+
Sbjct:   120 EFF---KVTCVGKTEDVKQQWIEALEEVASIAGHDSKNWPNEANMIEHIAKDVLNKL 173

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2028681 AT1G31540 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 3.4e-33, P = 3.4e-33
 Identities = 81/179 (45%), Positives = 112/179 (62%)

Query:     1 MAAXXXXXXCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPAL 60
             MA+        YDVFLSFRGED RV+F  H    L+   K+ T   D E+ R   + P L
Sbjct:     1 MASSSSSHNWLYDVFLSFRGEDVRVTFRSHFLKELDR--KLITAFRDNEIERSHSLWPDL 58

Query:    61 LNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGS 120
               AI+ S+I+VV+FSK+YASS WCLNEL++I+ C   N +IVIPVFY V PS VRHQ G 
Sbjct:    59 EQAIKESRIAVVVFSKNYASSSWCLNELLEIVNC---NDKIVIPVFYHVDPSQVRHQIGD 115

Query:   121 FGHGFDQL-KQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
             FG  F+   K+Q  E  E+  +W+ AL   +++ G +S K+  +A+++ +I  DVL K+
Sbjct:   116 FGKIFENTCKRQTDE--EVKNQWKKALTLVANMLGFDSAKWNDEAKMIEEIANDVLGKL 172

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 8.6e-33, P = 8.6e-33
 Identities = 82/167 (49%), Positives = 113/167 (67%)

Query:    12 YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
             YDVF SFRGED R SF  HL   L  R K  TFIDDE + R   I P LL+AI+ S+I++
Sbjct:    12 YDVFPSFRGEDVRDSFLSHLLKEL--RGKAITFIDDE-IERSRSIGPELLSAIKESRIAI 68

Query:    72 VIFSKDYASSKWCLNELVKILECKHTN-GQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQ 130
             VIFSK+YASS WCLNELV+I +C +TN  Q+VIP+F+ V  S+V+ QTG FG  F++  +
Sbjct:    69 VIFSKNYASSTWCLNELVEIHKC-YTNLNQMVIPIFFHVDASEVKKQTGEFGKVFEETCK 127

Query:   131 QFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKK 177
               K + E  Q W+ AL   + +AG++  K+  +A ++ ++ EDVL+K
Sbjct:   128 A-KSEDEK-QSWKQALAAVAVMAGYDLRKWPSEAAMIEELAEDVLRK 172

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 79/167 (47%), Positives = 107/167 (64%)

Query:    12 YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
             YDVF SFRGED R +F  HL     E   I TF DD  + R   I   L  A+  SKI V
Sbjct:    15 YDVFPSFRGEDVRGNFLSHLMKEF-ESKGIVTFKDDL-IERSQTIGLELKEAVRQSKIFV 72

Query:    72 VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
             VIFSK+YASS WCL+ELV+IL+CK      +IP+FY V+PSDVR+QTG FG GF +  + 
Sbjct:    73 VIFSKNYASSSWCLDELVEILKCKEERR--LIPIFYKVNPSDVRNQTGKFGRGFRETCEG 130

Query:   132 FKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
               +  E   KW+ AL E +++AG +S  ++++A  ++KI +D+L K+
Sbjct:   131 --KNDETQNKWKAALTEAANIAGEDSQSWKNEADFLTKIAKDILAKL 175

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 76/166 (45%), Positives = 112/166 (67%)

Query:    13 DVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVV 72
             DVF+SFRGED R +F  HL+    +R  IK F DD +++RG  ISP L++AI+GS+ ++V
Sbjct:    19 DVFVSFRGEDVRKTFVSHLFCEF-DRMGIKAFRDDLDLQRGKSISPELIDAIKGSRFAIV 77

Query:    73 IFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQF 132
             + S++YA+S WCL+EL+KI+EC   N   ++P+FY V PSDVR Q GSFG   D      
Sbjct:    78 VVSRNYAASSWCLDELLKIMEC---NKDTIVPIFYEVDPSDVRRQRGSFGE--DVESHSD 132

Query:   133 KEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
             KEK   V KW+ AL + + ++G +S  +  D++L+ KIV+D+  K+
Sbjct:   133 KEK---VGKWKEALKKLAAISGEDSRNW-DDSKLIKKIVKDISDKL 174

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 2.1e-32, P = 2.1e-32
 Identities = 82/180 (45%), Positives = 114/180 (63%)

Query:     1 MAAXXXXXXCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPAL 60
             MAA        YDVF SF G D R +F  HL   L+ ++ I TFID   + R   I+P L
Sbjct:     1 MAASSSSGRRRYDVFPSFSGVDVRKTFLSHLIEALDGKS-INTFID-HGIERSRTIAPEL 58

Query:    61 LNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGS 120
             ++AI  ++IS+VIFSK+YASS WCLNELV+I +C +  GQ+VIPVFY V PS+VR QTG 
Sbjct:    59 ISAIREARISIVIFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGE 118

Query:   121 FGHGFDQLKQQFKEK-P-EMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
             FG  F++  +  K+K P +  Q+W  AL + +++AG +     ++A +V KI  DV  K+
Sbjct:   119 FGKVFEKTCEVSKDKQPGDQKQRWVQALTDIANIAGEDLLNGPNEAHMVEKISNDVSNKL 178

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 3.2e-32, P = 3.2e-32
 Identities = 75/164 (45%), Positives = 107/164 (65%)

Query:    12 YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
             + VFLSFRGED R     H+     +R  I  FID+E ++RG  I P LL AI GSKI++
Sbjct:    40 HPVFLSFRGEDVRKGLLSHIQKEF-QRNGITPFIDNE-MKRGGSIGPELLQAIRGSKIAI 97

Query:    72 VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
             ++ S++Y SSKWCL+ELV+I++C+   GQ V+ VFY V PSDVR Q G FG  F   K+ 
Sbjct:    98 ILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVF---KKT 154

Query:   132 FKEKPE-MVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDV 174
                +PE MVQ+W+ AL   +++ G +S  + ++A ++ KI +DV
Sbjct:   155 CVGRPEEMVQRWKQALTSAANILGEDSRNWENEADMIIKISKDV 198

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-48
pfam01582	135	pfam01582, TIR, TIR domain	2e-41
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	4e-36
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	9e-16
pfam13676	102	pfam13676, TIR_2, TIR domain	3e-08

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  166 bits (421), Expect = 7e-48
 Identities = 82/179 (45%), Positives = 114/179 (63%), Gaps = 6/179 (3%)

Query: 2   AASSSSSSCN--YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPA 59
            ASSSSSS N  YDVF SF GED R++F  H    L +R  I  F  D E+ R   + P 
Sbjct: 1   MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKEL-DRKLIIAF-KDNEIERSQSLDPE 58

Query: 60  LLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTG 119
           L  AI  S+I+VV+FSK+YASS WCLNEL++I+ CK   GQ+VIPVFY + PS VR QTG
Sbjct: 59  LKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTG 118

Query: 120 SFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKM 178
            FG  F++  Q   E  +   +W+ AL + +++ G+ S  + ++A+++ +I  DVL K+
Sbjct: 119 DFGEAFEKTCQNKTE--DEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKL 175

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  135 bits (342), Expect = 2e-41
 Identities = 58/135 (42%), Positives = 85/135 (62%), Gaps = 3/135 (2%)

Query: 14  VFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVI 73
           VF+SF G+D R +F  HL   L E   IK  IDD +   G+ I   L  AIE S+ ++VI
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKEL-EEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVI 59

Query: 74  FSKDYASSKWCLNELVKILECKHT--NGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
           FS +YASS+WCL+ELV+I++C       ++++P+FY V PSDVR Q+G FG  F +  + 
Sbjct: 60  FSSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKW 119

Query: 132 FKEKPEMVQKWRGAL 146
             +K + ++ W+ AL
Sbjct: 120 SGDKEDKIRFWKKAL 134

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  122 bits (308), Expect = 4e-36
 Identities = 58/137 (42%), Positives = 75/137 (54%), Gaps = 6/137 (4%)

Query: 12  YDVFLSFRG-EDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKIS 70
           YDVF+S+ G ED R  F  HL         +  FIDD E   GD     +  AIE S+I+
Sbjct: 2   YDVFISYSGKEDVRNEFLSHLL-EKLRGYGLCVFIDDFEPGGGDLEE--IDEAIEKSRIA 58

Query: 71  VVIFSKDYASSKWCLNELVKILECKHT-NGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLK 129
           +V+ S +YA S+WCL+ELV  LE      G  VIP+FY V PSDVR Q G F   F +  
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 130 QQFKEKPEMVQKWRGAL 146
            ++ E  +  Q W+ AL
Sbjct: 119 LKWPEDEKE-QFWKKAL 134

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 71.0 bits (174), Expect = 9e-16
 Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 5/112 (4%)

Query: 4   SSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNA 63
           SSSSS+   DVF++ RG DT+ +    LY +L+ R  ++ F+D++ ++ GD++   + +A
Sbjct: 19  SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLS-RLNLRPFLDNKNMKPGDKLFDKINSA 77

Query: 64  IEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVR 115
           I   K+ V +FS  Y  S +CL+EL  I+E K    + VIP+F  V PS +R
Sbjct: 78  IRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 14  VFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVI 73
           VF+S+   D    +   L   L E   I+ ++D  ++  G++    +  A+  + + +V+
Sbjct: 1   VFISYASADRE--WAEWLADAL-EAAGIRVWLD-WDIPPGEDWRDEIEEALRSADVVLVL 56

Query: 74  FSKDYASSKWCLNELVKILECKHTNGQIVIPV 105
            S  Y +S WC  E    LE     G+ +IPV
Sbjct: 57  LSPAYLASPWCRAEWGAALE----RGKRLIPV 84

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.95
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.93
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.76
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.12
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.57
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.88
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.03
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	92.77
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	90.55
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	84.46
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	80.13

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1.6e-51  Score=320.36  Aligned_cols=159  Identities=31%  Similarity=0.523  Sum_probs=145.5

Q ss_pred             CCCCCCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhH
Q 036133            5 SSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWC   84 (182)
Q Consensus         5 ss~~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   84 (182)
                      ||+..++|||||||+|+|+|++|++||+.+|++ .||++|+|+.++.+|+.+.+.|.+||++|+++|+||||+|++|+||
T Consensus        20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~-~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSR-LNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             CCCCCCCCcEEEeCCCccccccHHHHHHHHHHH-CCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            444468899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCceEEeEEeecCCcccccc-cCchHhHHHHHHhhhccChHHHHHHHHHHHhccccccceeCC-CCC
Q 036133           85 LNELVKILECKHTNGQIVIPVFYSVSPSDVRHQ-TGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTK-FRH  162 (182)
Q Consensus        85 ~~EL~~i~~~~~~~~~~viPIfy~v~p~~vr~q-~g~f~~~f~~~~~~~~~~~~~v~~W~~aL~~v~~~~G~~~~~-~~~  162 (182)
                      ++||++|+++.    ..||||||+|+|++||+| .|.             .+.+++++||.||++|++++||++.. .++
T Consensus        99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~  161 (187)
T PLN03194         99 LHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGN  161 (187)
T ss_pred             HHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCC
Confidence            99999999874    379999999999999997 442             23689999999999999999999875 467


Q ss_pred             hHHHHHHHHHHHHHHhccc
Q 036133          163 DAQLVSKIVEDVLKKMEKI  181 (182)
Q Consensus       163 e~~~i~~Iv~~v~~~l~~~  181 (182)
                      |+++|++||++|.++|-.+
T Consensus       162 e~e~i~~iv~~v~k~l~~~  180 (187)
T PLN03194        162 WSEVVTMASDAVIKNLIEL  180 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998543

>PLN03210 Resistant to P

Probab=100.00  E-value=1.3e-50  Score=389.46  Aligned_cols=176  Identities=44%  Similarity=0.801  Sum_probs=167.5

Q ss_pred             CCCCCC-CCCCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCcc
Q 036133            1 MAASSS-SSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYA   79 (182)
Q Consensus         1 m~s~ss-~~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~   79 (182)
                      |||||| ++.++|||||||||+|+|++|++||+.+|.+ +||++|.|+ ++++|+.+.+++.+||++|+++|||||++|+
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~-~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya   78 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDR-KLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA   78 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHH-CCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence            777655 4589999999999999999999999999999 999999987 5999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhhhcCCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChHHHHHHHHHHHhccccccceeCC
Q 036133           80 SSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTK  159 (182)
Q Consensus        80 ~S~wc~~EL~~i~~~~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~aL~~v~~~~G~~~~~  159 (182)
                      +|.||++||++|++|+++.+++|+||||+|+|++||+|+|.||++|.+++++  .+++++++||+||++|++++||++.+
T Consensus        79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~  156 (1153)
T PLN03210         79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQN  156 (1153)
T ss_pred             cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCC
Confidence            9999999999999999999999999999999999999999999999999875  35789999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHhcc
Q 036133          160 FRHDAQLVSKIVEDVLKKMEK  180 (182)
Q Consensus       160 ~~~e~~~i~~Iv~~v~~~l~~  180 (182)
                      +.+|+++|++||++|.++|+.
T Consensus       157 ~~~E~~~i~~Iv~~v~~~l~~  177 (1153)
T PLN03210        157 WPNEAKMIEEIANDVLGKLNL  177 (1153)
T ss_pred             CCCHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999974

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.95  E-value=4.8e-29  Score=187.92  Aligned_cols=133  Identities=35%  Similarity=0.583  Sum_probs=118.3

Q ss_pred             EEEecccccCccchHHHHHHHHhhcC--CcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHHHH
Q 036133           14 VFLSFRGEDTRVSFTCHLYYNLNERT--KIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKI   91 (182)
Q Consensus        14 VFIS~~~~D~~~~fv~~L~~~L~~~~--gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i   91 (182)
                      |||||++.+++..|+.+|.++|++ .  |+++|++++|+.+|..+.+++.++|++|+++|+|+|++|+.|+||+.||..+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~-~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a   79 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEE-RPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA   79 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHC-TSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHh-CCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence            899999944467899999999999 7  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCC--ceEEeEEeecCCcccc-cccCchHhHHHHHHhhhccC--hHHHHHHHHHHH
Q 036133           92 LECKHTNG--QIVIPVFYSVSPSDVR-HQTGSFGHGFDQLKQQFKEK--PEMVQKWRGALI  147 (182)
Q Consensus        92 ~~~~~~~~--~~viPIfy~v~p~~vr-~q~g~f~~~f~~~~~~~~~~--~~~v~~W~~aL~  147 (182)
                      +++..+.+  ..|+||||++.+++++ .+.+.|+..|..+....+.+  ......|++++.
T Consensus        80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            99976644  7999999999999999 79999999998888776544  578999999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.93  E-value=1.4e-25  Score=167.51  Aligned_cols=137  Identities=41%  Similarity=0.671  Sum_probs=115.6

Q ss_pred             cccEEEeccc-ccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHH
Q 036133           11 NYDVFLSFRG-EDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELV   89 (182)
Q Consensus        11 ~ydVFIS~~~-~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~   89 (182)
                      .|||||||++ .+....|+.+|...|.. .|+.+|.|+..  +|.....+|.++|++|++.|+|+||+|..|+||..|+.
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~-~~~~v~~d~~~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~   77 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRG-YGLCVFIDDFE--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELV   77 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhc-CCcEEEecCcc--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHH
Confidence            4999999999 45567899999999999 99999999753  33333339999999999999999999999999999999


Q ss_pred             HHHHhhhc-CCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChHHHHHHHHHHHhccc
Q 036133           90 KILECKHT-NGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSH  151 (182)
Q Consensus        90 ~i~~~~~~-~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~aL~~v~~  151 (182)
                      .++++..+ .+.+||||+++..|.++.++.+.++..+..+......+..+ +.|+.++..+++
T Consensus        78 ~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       78 AALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            99998654 67799999999999999999999999998875555544444 789999987754

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.76  E-value=5.2e-19  Score=125.72  Aligned_cols=87  Identities=32%  Similarity=0.573  Sum_probs=75.3

Q ss_pred             EEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHHHHHH
Q 036133           14 VFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILE   93 (182)
Q Consensus        14 VFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~   93 (182)
                      |||||++.|  ..++..|...|+. .|+++|+|. ++.+|+.+.+.+.++|++|+..|+++|++|..|+||..|+..+.+
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~-~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLES-AGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHH-TT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred             eEEEecCCc--HHHHHHHHHHHhh-cCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence            899999999  4689999999999 999999997 899999999999999999999999999999999999999999944


Q ss_pred             hhhcCCceEEeEEee
Q 036133           94 CKHTNGQIVIPVFYS  108 (182)
Q Consensus        94 ~~~~~~~~viPIfy~  108 (182)
                          .+..||||.++
T Consensus        77 ----~~~~iipv~~~   87 (102)
T PF13676_consen   77 ----RGKPIIPVRLD   87 (102)
T ss_dssp             ----TSESEEEEECS
T ss_pred             ----CCCEEEEEEEC
Confidence                44589999954

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.12  E-value=2.8e-10  Score=99.88  Aligned_cols=141  Identities=21%  Similarity=0.371  Sum_probs=98.3

Q ss_pred             CCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCcc----C----
Q 036133            9 SCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYA----S----   80 (182)
Q Consensus         9 ~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~----~----   80 (182)
                      ++..|||||||+.. ....++-|.-.|.- +|++||+|-+.+..|. +.+.+.+.|...+.+|+|+|||..    +    
T Consensus       610 skq~DVFISYRRst-GnQLASLiKV~LQL-~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  610 SKQIDVFISYRRST-GNQLASLIKVLLQL-RGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             cCCcceEEEeeccc-cHHHHHHHHHHHHh-cCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            57899999998765 46788888888999 9999999998898886 456899999999999999999964    3    


Q ss_pred             ChhHHHHHHHHHHhhhcCCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChHHHHHHHHHHHhccccccceeCCC
Q 036133           81 SKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKF  160 (182)
Q Consensus        81 S~wc~~EL~~i~~~~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~aL~~v~~~~G~~~~~~  160 (182)
                      -.|...||..+.+|.+    .|||||-.           .|.  |-.-+.-.++|...          |..+.|.... +
T Consensus       687 eDWVHKEl~~Afe~~K----NIiPI~D~-----------aFE--~Pt~ed~iPnDirm----------i~kyNGvKWv-H  738 (832)
T KOG3678|consen  687 EDWVHKELKCAFEHQK----NIIPIFDT-----------AFE--FPTKEDQIPNDIRM----------ITKYNGVKWV-H  738 (832)
T ss_pred             HHHHHHHHHHHHHhcC----Ceeeeecc-----------ccc--CCCchhcCcHHHHH----------HHhccCeeee-h
Confidence            3566667777766654    79999832           111  00000001111122          3344554433 2


Q ss_pred             CChHHHHHHHHHHHHHHhcc
Q 036133          161 RHDAQLVSKIVEDVLKKMEK  180 (182)
Q Consensus       161 ~~e~~~i~~Iv~~v~~~l~~  180 (182)
                      +++...+.|||+-+...+|+
T Consensus       739 dYQdA~maKvvRFitGe~nR  758 (832)
T KOG3678|consen  739 DYQDACMAKVVRFITGELNR  758 (832)
T ss_pred             hhHHHHHHHHHHHHhccccC
Confidence            35667899999988888775

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.57  E-value=1.8e-07  Score=69.45  Aligned_cols=91  Identities=22%  Similarity=0.366  Sum_probs=48.0

Q ss_pred             ccEEEecccccCccchHHHHHHHHhhcCC-------cce----------EeeCccccCCCcchHHHHHHhhcCceEEEEe
Q 036133           12 YDVFLSFRGEDTRVSFTCHLYYNLNERTK-------IKT----------FIDDEEVRRGDEISPALLNAIEGSKISVVIF   74 (182)
Q Consensus        12 ydVFIS~~~~D~~~~fv~~L~~~L~~~~g-------i~~----------f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~   74 (182)
                      |+|||||++.|.. ..+..|...+.. .+       +..          +-+..+....+.+...|.++|.+|.++||++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLi   78 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLEN-SYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLI   78 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH--------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred             CCccccccccCcH-HHHHHHHHHhcc-ccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEe
Confidence            5799999998853 356777777766 21       111          1122222344578889999999999999999


Q ss_pred             ecCccCChhHHHHHHHHHHhhhcCCceEEeEEee
Q 036133           75 SKDYASSKWCLNELVKILECKHTNGQIVIPVFYS  108 (182)
Q Consensus        75 S~~y~~S~wc~~EL~~i~~~~~~~~~~viPIfy~  108 (182)
                      |++...|.|+..|+..+++.    +..||.|.+.
T Consensus        79 g~~T~~s~wV~~EI~~A~~~----~~~Ii~V~~~  108 (130)
T PF08937_consen   79 GPNTAKSKWVNWEIEYALKK----GKPIIGVYLP  108 (130)
T ss_dssp             -TT----HHHHHHHHHHTTT-------EEEEETT
T ss_pred             CCCcccCcHHHHHHHHHHHC----CCCEEEEECC
Confidence            99999999999999998873    4478887753

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.88  E-value=9.3e-05  Score=55.78  Aligned_cols=65  Identities=17%  Similarity=0.264  Sum_probs=52.6

Q ss_pred             cEEEecccccCc-cchHHHHHHHHhhcC-CcceEeeCccccC--CCcchHHHHHHhhcCceEEEEeecCc
Q 036133           13 DVFLSFRGEDTR-VSFTCHLYYNLNERT-KIKTFIDDEEVRR--GDEISPALLNAIEGSKISVVIFSKDY   78 (182)
Q Consensus        13 dVFIS~~~~D~~-~~fv~~L~~~L~~~~-gi~~f~d~~~~~~--G~~i~~~i~~aI~~S~~~Ivv~S~~y   78 (182)
                      .|||||+..... ...|..|...|++ . |+.|.+|..+...  +..+..=+.+.+++++..|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~-~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQ-NCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHh-ccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985433 3568899999999 7 9999999877743  66666677888999999999999544

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.03  E-value=0.0026  Score=47.18  Aligned_cols=78  Identities=19%  Similarity=0.239  Sum_probs=61.8

Q ss_pred             cEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCc-c------------
Q 036133           13 DVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDY-A------------   79 (182)
Q Consensus        13 dVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y-~------------   79 (182)
                      .|||.|+ .|  ...+..+...|+. .|+.+.+-......|..+.+.+.+.+.+++.+|++++|+= .            
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~-~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~   76 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEK-LGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPR   76 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHh-CCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCccccccc
Confidence            3899998 55  2567889999998 8998877666679999999999999999999999999852 1            


Q ss_pred             CChhHHHHHHHHHHh
Q 036133           80 SSKWCLNELVKILEC   94 (182)
Q Consensus        80 ~S~wc~~EL~~i~~~   94 (182)
                      .....+.|+..++..
T Consensus        77 aR~NVifE~G~f~g~   91 (125)
T PF10137_consen   77 ARQNVIFELGLFIGK   91 (125)
T ss_pred             cccceeehhhHHHhh
Confidence            223356687777765

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=92.77  E-value=0.41  Score=32.47  Aligned_cols=66  Identities=15%  Similarity=0.125  Sum_probs=45.8

Q ss_pred             cEEEecccccCccchHHHHHHHHhhcCCcceEeeCccc-cCCCcchHHHHHHhhcCceEEEEeecCccCC
Q 036133           13 DVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEV-RRGDEISPALLNAIEGSKISVVIFSKDYASS   81 (182)
Q Consensus        13 dVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~-~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S   81 (182)
                      .||||-.-.|-. .--..|...|.+ .|.....-+. + ..+....+.+.+.|++|++.|.++-..|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~-~~~~~~~~e~-~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRR-LGCEPVGMEF-FPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHH-CCCeeeeeee-ecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            389997666642 224567777777 7765543322 3 2345556688899999999999999999754

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=90.55  E-value=0.49  Score=39.32  Aligned_cols=102  Identities=15%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             CCCcccEEEecccccCccchHHHHHHHHhhc-CCcceEeeCc---cccCCCcchHHHHHHh-hcCceEEEEeecCccCCh
Q 036133            8 SSCNYDVFLSFRGEDTRVSFTCHLYYNLNER-TKIKTFIDDE---EVRRGDEISPALLNAI-EGSKISVVIFSKDYASSK   82 (182)
Q Consensus         8 ~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~-~gi~~f~d~~---~~~~G~~i~~~i~~aI-~~S~~~Ivv~S~~y~~S~   82 (182)
                      +.+.||+=+||.|+-  ++.|.....+++.. -.+..|+|..   -+.+|+ +.+-+...- ..|+..+|....+|....
T Consensus       174 ~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K~  250 (329)
T COG4916         174 SEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICKS  250 (329)
T ss_pred             cccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEee
Confidence            368899999999986  47899998889842 4567788742   233443 222222222 368888888999999999


Q ss_pred             hHHHHHHHHHHhhhcCCceEEeEEe-ecCCccc
Q 036133           83 WCLNELVKILECKHTNGQIVIPVFY-SVSPSDV  114 (182)
Q Consensus        83 wc~~EL~~i~~~~~~~~~~viPIfy-~v~p~~v  114 (182)
                      ||.-|-..+-...  .-+...||.| +++-+.+
T Consensus       251 ~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         251 TCHIEGLEGRLNP--ILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             eeccchhhccccc--cccccceEEEEecCCccc
Confidence            9999876654431  1235667766 3554444

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=84.46  E-value=9.3  Score=27.02  Aligned_cols=69  Identities=12%  Similarity=0.022  Sum_probs=48.4

Q ss_pred             cchHHHHHHHHhhcCCcceEeeCcc-cc---CCCcch----HHHHHHhhcCceEEEEeecCccCChhHHHHHHHHHHhh
Q 036133           25 VSFTCHLYYNLNERTKIKTFIDDEE-VR---RGDEIS----PALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECK   95 (182)
Q Consensus        25 ~~fv~~L~~~L~~~~gi~~f~d~~~-~~---~G~~i~----~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~   95 (182)
                      ..+...+.+.|+. .|+.+|...+. ..   .+....    ..-.++|++|++.|+++.+.- .+.=+..|+..+....
T Consensus        13 ~~~~~~~~~~L~~-~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~alg   89 (113)
T PF05014_consen   13 KARVERLREALEK-NGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALG   89 (113)
T ss_dssp             HHHHHHHHHHHHT-TTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh-CCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCC
Confidence            5678899999999 99988876521 11   122333    334468999999999998755 5666788998887654

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=80.13  E-value=13  Score=23.86  Aligned_cols=62  Identities=23%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHHHHHHhhhcCCceEE
Q 036133           28 TCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVI  103 (182)
Q Consensus        28 v~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~vi  103 (182)
                      ..-|+..|++ .|+.+-....           ...++....-++++++|.+.-+.  -.++..+.+..+.+++.||
T Consensus         7 ~~a~~~~L~~-~g~~v~~~~~-----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    7 TYALYQLLEE-QGVKVERWRK-----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHH-CCCeeEEecc-----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            3568888999 8988854332           12244558889999999966553  3555566665566666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		6e-32
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		9e-32
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		7e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  133 bits (334), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 5/166 (3%)
Query: 12  YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
           YDVFLSFRG DTR +F   LY  L  R+ I+TF DD+E+  G   SP L + IE S+ +V
Sbjct: 9   YDVFLSFRGHDTRHNFISFLYKELVRRS-IRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 72  VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
           V+ S++YA+S WCL+ELV I++ +      V+P+FY V P+ VR QTG     F   K  
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFK--KHA 125
Query: 132 FKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKK 177
            +E PE V KWR AL   + L+G  S     D++LV KI  ++  K
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  132 bits (332), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 99/170 (58%), Gaps = 4/170 (2%)
Query: 12  YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
           Y+VFLSFRG DTR  FT  LY +L  R KI TF DD+E+ +G EI P LL AI+ SKI V
Sbjct: 36  YEVFLSFRGPDTREQFTDFLYQSL-RRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 72  VIFSKDYASSKWCLNELVKILECKHTNG-QIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQ 130
            I S  YA SKWCL EL +I+  +  +  +I++P+FY V PSDVRHQTG +   F +   
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 QFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEK 180
           +F    + +Q W+ AL +   L G    K      +  K+  D+   + K
Sbjct: 155 KFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 12  YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
           +D+F+S   ED +  F   L + L      + + DD  +R GD +  ++   +  S+  +
Sbjct: 21  HDIFISHAWED-KADFVEALAHTLRA-AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78
Query: 72  VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDV 114
           V+ S  +   +W   EL  + + + +    ++P+++ VS  +V
Sbjct: 79  VVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	2e-93
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-92
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	4e-72
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-19
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	8e-12
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	8e-09
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	5e-06
2js7_A	160	Myeloid differentiation primary response protein M	2e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  268 bits (687), Expect = 2e-93
 Identities = 75/178 (42%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 5   SSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAI 64
           SS ++  YDVFLSFRG DTR +F   LY  L  R  I+TF DD+E+  G   SP L + I
Sbjct: 2   SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRR-SIRTFKDDKELENGQRFSPELKSPI 60

Query: 65  EGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHG 124
           E S+ +VV+ S++YA+S WCL+ELV I++ +      V+P+FY V P+ VR QTG     
Sbjct: 61  EVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQ 120

Query: 125 FDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEKIT 182
           F +     +E PE V KWR AL   + L+G  S     D++LV KI  ++  K     
Sbjct: 121 FKKHAS--REDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEISNKKTIYA 174

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  266 bits (683), Expect = 2e-92
 Identities = 74/182 (40%), Positives = 102/182 (56%), Gaps = 8/182 (4%)

Query: 1   MAASSSSSS----CNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEI 56
           ++ S++ S       Y+VFLSFRG DTR  FT  LY +L    KI TF DD+E+ +G EI
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRY-KIHTFRDDDELLKGKEI 79

Query: 57  SPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNG-QIVIPVFYSVSPSDVR 115
            P LL AI+ SKI V I S  YA SKWCL EL +I+  +  +  +I++P+FY V PSDVR
Sbjct: 80  GPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVR 139

Query: 116 HQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVL 175
           HQTG +   F +   +F    + +Q W+ AL +   L G    K      +  K+  D+ 
Sbjct: 140 HQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIW 197

Query: 176 KK 177
             
Sbjct: 198 SH 199

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  213 bits (545), Expect = 4e-72
 Identities = 26/147 (17%), Positives = 62/147 (42%), Gaps = 4/147 (2%)

Query: 1   MAASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPAL 60
              +  +S+  +D+F+S   ED +  F   L + L      + + DD  +R GD +  ++
Sbjct: 10  TTNADLTSAPPHDIFISHAWED-KADFVEALAHTL-RAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 61  LNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGS 120
              +  S+  +V+ S  +   +W   EL  + + + +    ++P+++ VS  +V   + +
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPT 127

Query: 121 FGHGFDQLKQQFKEKPEMVQKWRGALI 147
                        +  + +     A+I
Sbjct: 128 MADKLA--FNTSTKSVDEIVADLMAII 152

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 79.7 bits (197), Expect = 1e-19
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 2   AASSSSSSCNYDVFLSFRGEDTRVSFTCHLYYNL-NERTKIKTFIDDEEVRRGDEISPAL 60
              SS  S +YDV +    ED        L   L      ++ F+   +   G  I   L
Sbjct: 1   GPGSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSEL 58

Query: 61  LNAIEGSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVS----PSDVRH 116
             A+  S   V++ +  +    WC  ++++ L          IP+   +S    P ++R 
Sbjct: 59  CQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRF 118

Query: 117 QTGSFGHGFDQLKQQFKEK 135
                G G D   +Q KE 
Sbjct: 119 MYYVDGRGPDGGFRQVKEA 137

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 59.3 bits (143), Expect = 8e-12
 Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 20/145 (13%)

Query: 12  YDVFLSFRGEDTRVSFTC----------HLYYNLNERTKIKTFIDDEEVRRGDEISPALL 61
           YD +LS+   D                  L   L +    K FI D ++         + 
Sbjct: 3   YDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVA 62

Query: 62  NAIEGSKISVVIFSKDYA-SSKWCLNELVKIL-ECKHTNGQIVIPVFYSVSPSDVRHQTG 119
             ++ SK  +++ + +Y     W + EL   L     T    VI +  S     + +Q  
Sbjct: 63  RCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQE- 121

Query: 120 SFGHGFDQLKQQFKEKPEMVQKWRG 144
                 + LK   K     V KW G
Sbjct: 122 -----VEALKHTIKLLT--VIKWHG 139

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 51.5 bits (123), Expect = 8e-09
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 12  YDVFLSFRGEDTR-VSFTCHLYYNL-NERTKIKTFIDDEEVRRGDEISPALLNAIEGSKI 69
           +  F+S+   D+  V     L  NL  E   I   + +     G  IS  +++ IE S  
Sbjct: 36  FHAFISYSEHDSLWVKN--ELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 70  SVVIFSKDYASSKWCLNELVKIL-ECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQL 128
           S+ + S ++  ++WC  E         H N   +I +     P             + +L
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTR------YHKL 147

Query: 129 KQQFKEKPEMVQKWRG 144
           K   ++K     +W  
Sbjct: 148 KALLEKKA--YLEWPK 161

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 7   SSSCNYDVFLSFRGEDTR-VSFTCHLYYNL-NERTKIKTFIDDEEVRRGDEISPALLNAI 64
           S +  YD F+S+   D   V     +   L N     K  +   +   G  I   ++++I
Sbjct: 1   SRNIXYDAFVSYSERDAYWVEN--LMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSI 58

Query: 65  EGSKISVVIFSKDYASSKWCLNELVKIL-ECKHTNGQIVIPVFY 107
           E S  +V + S+++  S+W   EL          N    I +  
Sbjct: 59  EKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILL 102

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 12  YDVFLSFRGEDTRVSFTCHLYYNL-NERTKIKTFIDDEEVRRGDEISPALLNAIE-GSKI 69
           +D F+ +   D +  F   +   L     ++K  + D +V  G  +       IE   + 
Sbjct: 17  FDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRR 74

Query: 70  SVVIFSKDYASSKWCLNELVKIL-ECKHTNGQIVIPVFYSVSPSDVRH 116
            VV+ S DY  SK C  +    L      + + +IP+ Y     +   
Sbjct: 75  MVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPS 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.93
2js7_A	160	Myeloid differentiation primary response protein M	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.13
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.17
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	84.26
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	83.31
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	83.18
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	82.19

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=9.1e-61  Score=372.19  Aligned_cols=169  Identities=43%  Similarity=0.748  Sum_probs=146.5

Q ss_pred             CCCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHH
Q 036133            8 SSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNE   87 (182)
Q Consensus         8 ~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E   87 (182)
                      .+++|||||||||+|+|+.|++||+.+|++ +||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++|
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~-~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E   83 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVR-RSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE   83 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHH-TTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHH-CCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence            468899999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChHHHHHHHHHHHhccccccceeCCCCChHHHH
Q 036133           88 LVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLV  167 (182)
Q Consensus        88 L~~i~~~~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~aL~~v~~~~G~~~~~~~~e~~~i  167 (182)
                      |++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++  .+++++++||.||++|++++||++.  .+|+++|
T Consensus        84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i  159 (176)
T 3jrn_A           84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLV  159 (176)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHH
T ss_pred             HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHHHH
Confidence            99999999889999999999999999999999999999999987  5789999999999999999999994  6799999


Q ss_pred             HHHHHHHHHHhccc
Q 036133          168 SKIVEDVLKKMEKI  181 (182)
Q Consensus       168 ~~Iv~~v~~~l~~~  181 (182)
                      ++||++|+++|++.
T Consensus       160 ~~Iv~~v~~~l~~~  173 (176)
T 3jrn_A          160 DKIANEISNKKTIY  173 (176)
T ss_dssp             HHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999999863

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1.7e-60  Score=377.06  Aligned_cols=169  Identities=44%  Similarity=0.757  Sum_probs=162.3

Q ss_pred             CCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHH
Q 036133            9 SCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNEL   88 (182)
Q Consensus         9 ~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL   88 (182)
                      +++|||||||||+|+|+.|++||+.+|++ +||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus        33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~-~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL  111 (204)
T 3ozi_A           33 SVEYEVFLSFRGPDTREQFTDFLYQSLRR-YKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMEL  111 (204)
T ss_dssp             -CCCCEEEEECHHHHTTTHHHHHHHHHHH-TTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHH
T ss_pred             CcCCeEEEeccccCCCHHHHHHHHHHHHH-CCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHH
Confidence            78999999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhc-CCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChHHHHHHHHHHHhccccccceeCCCCChHHHH
Q 036133           89 VKILECKHT-NGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLV  167 (182)
Q Consensus        89 ~~i~~~~~~-~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~aL~~v~~~~G~~~~~~~~e~~~i  167 (182)
                      ++|++|+++ ++++||||||+|+|++||+|+|.||++|.+|++++  +++++++||.||++|++++||++.++.+|+++|
T Consensus       112 ~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i  189 (204)
T 3ozi_A          112 AEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIA  189 (204)
T ss_dssp             HHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHH
T ss_pred             HHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCCCHHHHH
Confidence            999999865 68899999999999999999999999999999876  478999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 036133          168 SKIVEDVLKKMEK  180 (182)
Q Consensus       168 ~~Iv~~v~~~l~~  180 (182)
                      ++||++|+++|++
T Consensus       190 ~~Iv~di~~kl~~  202 (204)
T 3ozi_A          190 DKVSADIWSHISK  202 (204)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999975

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=7.2e-37  Score=233.14  Aligned_cols=118  Identities=19%  Similarity=0.365  Sum_probs=112.1

Q ss_pred             CCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHH
Q 036133            9 SCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNEL   88 (182)
Q Consensus         9 ~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL   88 (182)
                      .++|||||||+++| +..|+.+|+.+|++ .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|+.|.||++||
T Consensus        18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~-~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El   95 (154)
T 3h16_A           18 APPHDIFISHAWED-KADFVEALAHTLRA-AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL   95 (154)
T ss_dssp             CCSEEEEEEEEGGG-TTTTHHHHHHHHHH-HTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred             CCCceEEEECcccC-hHHHHHHHHHHHHH-CCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence            68999999999999 56899999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCceEEeEEeecCCcccccccCchHhHHHHH
Q 036133           89 VKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQL  128 (182)
Q Consensus        89 ~~i~~~~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~  128 (182)
                      ..++++..+++.+||||||+++|++|++|.|.|+++|...
T Consensus        96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~  135 (154)
T 3h16_A           96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN  135 (154)
T ss_dssp             HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred             HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence            9999998778889999999999999999999999887643

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=8.4e-32  Score=203.76  Aligned_cols=130  Identities=22%  Similarity=0.341  Sum_probs=92.7

Q ss_pred             CCCcccEEEecccccCccchHHHHHHHHhhc-CCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHH
Q 036133            8 SSCNYDVFLSFRGEDTRVSFTCHLYYNLNER-TKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLN   86 (182)
Q Consensus         8 ~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~-~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   86 (182)
                      .++.|||||||+++|+  .||.+|..+|++. .|+++|++++++.||+.+.++|.++|++|+++|+|+|++|++|+||+.
T Consensus         7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~   84 (146)
T 3ub2_A            7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY   84 (146)
T ss_dssp             TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred             CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence            3789999999999995  5799999999983 499999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCceEEeEEeecCCccc----ccccCc----hHhHHHHHHhhhccChHHHHHHHHHH
Q 036133           87 ELVKILECKHTNGQIVIPVFYSVSPSDV----RHQTGS----FGHGFDQLKQQFKEKPEMVQKWRGAL  146 (182)
Q Consensus        87 EL~~i~~~~~~~~~~viPIfy~v~p~~v----r~q~g~----f~~~f~~~~~~~~~~~~~v~~W~~aL  146 (182)
                      |+..++.+...+..+||||||+++++++    +.....    ...+|.++       .+.|.+|++||
T Consensus        85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            9999999864344478899999886555    433321    23444433       57789999886

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=3.6e-27  Score=178.71  Aligned_cols=104  Identities=19%  Similarity=0.339  Sum_probs=92.8

Q ss_pred             CCCcccEEEecccccCccchHHH-HHHHHhhcC--CcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhH
Q 036133            8 SSCNYDVFLSFRGEDTRVSFTCH-LYYNLNERT--KIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWC   84 (182)
Q Consensus         8 ~~~~ydVFIS~~~~D~~~~fv~~-L~~~L~~~~--gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   84 (182)
                      +++.|||||||+++|.  .||.+ |...|++ .  |+++|+|++++.||+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~-~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc   78 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELEN-FNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWX   78 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTT-SSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhc-CCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchH
Confidence            3678999999999995  79986 9999998 5  999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-hhcCCceEEeEEee-cCCccc
Q 036133           85 LNELVKILEC-KHTNGQIVIPVFYS-VSPSDV  114 (182)
Q Consensus        85 ~~EL~~i~~~-~~~~~~~viPIfy~-v~p~~v  114 (182)
                      +.|+..++.+ ..+++.+||||||+ +++..+
T Consensus        79 ~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           79 KYELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            9999999864 45567789999996 444334

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.8e-26  Score=175.61  Aligned_cols=102  Identities=22%  Similarity=0.301  Sum_probs=91.2

Q ss_pred             CcccEEEecccccC---------ccchHHHHHH-HHh-hcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCc
Q 036133           10 CNYDVFLSFRGEDT---------RVSFTCHLYY-NLN-ERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDY   78 (182)
Q Consensus        10 ~~ydVFIS~~~~D~---------~~~fv~~L~~-~L~-~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y   78 (182)
                      +.|||||||+++|+         +..||.+|.. .|+ + .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~-~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y   79 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKH-YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNY   79 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHT-SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCC-CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccch
Confidence            47999999999996         3679988665 699 7 9999999999999999999999999999999999999999


Q ss_pred             c-CChhHHHHHHHHHHhh-hcCCceEEeEEeecCCc
Q 036133           79 A-SSKWCLNELVKILECK-HTNGQIVIPVFYSVSPS  112 (182)
Q Consensus        79 ~-~S~wc~~EL~~i~~~~-~~~~~~viPIfy~v~p~  112 (182)
                      + .|.||+.|+..++.+. .+++..||||+|+..+.
T Consensus        80 ~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           80 VVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence            7 9999999999999985 56688999999876554

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=1.3e-26  Score=177.60  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=92.1

Q ss_pred             CCCcccEEEecccccCccchHHHHHHHHhhc-CCcceEeeCccccCCCcchHHHHHHhh-cCceEEEEeecCccCChhHH
Q 036133            8 SSCNYDVFLSFRGEDTRVSFTCHLYYNLNER-TKIKTFIDDEEVRRGDEISPALLNAIE-GSKISVVIFSKDYASSKWCL   85 (182)
Q Consensus         8 ~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~-~gi~~f~d~~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~wc~   85 (182)
                      .++.|||||||+++|  ..||.+|..+|++. .|+++|++++++.||+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus        13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~   90 (160)
T 2js7_A           13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD   90 (160)
T ss_dssp             CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred             CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence            368899999999999  58999999999983 469999999999999999999999999 79999999999999999999


Q ss_pred             HHHHHHHHhh-hcCCceEEeEEeecCC
Q 036133           86 NELVKILECK-HTNGQIVIPVFYSVSP  111 (182)
Q Consensus        86 ~EL~~i~~~~-~~~~~~viPIfy~v~p  111 (182)
                      .|+..++++. ..++.+||||||+.-+
T Consensus        91 ~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           91 FQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            9999999875 4456789999997654

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=3.5e-26  Score=178.10  Aligned_cols=102  Identities=22%  Similarity=0.392  Sum_probs=87.7

Q ss_pred             CCCcccEEEecccccCccchHHH-HHHHHhhc-CCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHH
Q 036133            8 SSCNYDVFLSFRGEDTRVSFTCH-LYYNLNER-TKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCL   85 (182)
Q Consensus         8 ~~~~ydVFIS~~~~D~~~~fv~~-L~~~L~~~-~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   85 (182)
                      .++.|||||||+++|.  .||.. |...|+++ .|+++|++++++.||+.+.++|.++|++|+++|+|+||+|++|+||+
T Consensus        32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~  109 (178)
T 2j67_A           32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH  109 (178)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred             CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence            3789999999999994  79975 99999873 79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhcCCceEEeEEeecCC
Q 036133           86 NELVKILEC-KHTNGQIVIPVFYSVSP  111 (182)
Q Consensus        86 ~EL~~i~~~-~~~~~~~viPIfy~v~p  111 (182)
                      .|+..++.+ ..+++++||||||+.-|
T Consensus       110 ~El~~a~~~~~~~~~~~vIpV~~~~i~  136 (178)
T 2j67_A          110 YEFYFAHHNLFHENSDHIILILLEPIP  136 (178)
T ss_dssp             THHHHTTCC-------CEEEEESSCCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence            999999976 35567799999997444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=5.7e-20  Score=170.74  Aligned_cols=102  Identities=18%  Similarity=0.340  Sum_probs=92.5

Q ss_pred             CCcccEEEecccccCccchH-HHHHHHHhh----cCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChh
Q 036133            9 SCNYDVFLSFRGEDTRVSFT-CHLYYNLNE----RTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKW   83 (182)
Q Consensus         9 ~~~ydVFIS~~~~D~~~~fv-~~L~~~L~~----~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w   83 (182)
                      .+.|||||||+++|.  .|| ..|...|++    +.|+++|++++|+.||+.+.++|.++|++||++|+|+|++|+.|+|
T Consensus       668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w  745 (844)
T 3j0a_A          668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW  745 (844)
T ss_dssp             CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred             ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence            689999999999994  677 679999985    2689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-hcCCceEEeEEeecCCc
Q 036133           84 CLNELVKILECK-HTNGQIVIPVFYSVSPS  112 (182)
Q Consensus        84 c~~EL~~i~~~~-~~~~~~viPIfy~v~p~  112 (182)
                      |..|+..++.+. ++++++||||||+..|.
T Consensus       746 c~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          746 CLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             TTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            999999998874 66788999999986654

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.13  E-value=2.7e-06  Score=60.75  Aligned_cols=72  Identities=8%  Similarity=0.013  Sum_probs=53.3

Q ss_pred             CcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHH
Q 036133           10 CNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELV   89 (182)
Q Consensus        10 ~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~   89 (182)
                      ..|.+||||...| .   .+.|...|.+ .|+..- |               ..|+.|.+.|++.++....|+||..|+.
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~-~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~   61 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQ-SGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVD   61 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHH-HCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhC-CCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence            4699999999988 2   3444444444 555322 2               5789999999999999999999999988


Q ss_pred             HHHHhhhcCCceEEeEE
Q 036133           90 KILECKHTNGQIVIPVF  106 (182)
Q Consensus        90 ~i~~~~~~~~~~viPIf  106 (182)
                      .+.+.    +.+|+-|.
T Consensus        62 ~A~~~----gkpIigV~   74 (111)
T 1eiw_A           62 LARKS----SKPIITVR   74 (111)
T ss_dssp             HHTTT----TCCEEEEC
T ss_pred             HHHHc----CCCEEEEE
Confidence            77653    44666664

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.17  E-value=0.0033  Score=48.41  Aligned_cols=97  Identities=21%  Similarity=0.234  Sum_probs=67.9

Q ss_pred             cchHHHHHHHHhhcCCcceEeeCcccc-------C-CCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHHHHHHhhh
Q 036133           25 VSFTCHLYYNLNERTKIKTFIDDEEVR-------R-GDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKH   96 (182)
Q Consensus        25 ~~fv~~L~~~L~~~~gi~~f~d~~~~~-------~-G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~   96 (182)
                      ..+...|..--.+ ..+-.|.|-++..       . -..|.+.|.+.|..|+..|+++|++...|.|-..|+..+++   
T Consensus        31 i~yy~lL~aWk~n-~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---  106 (189)
T 3hyn_A           31 FVYYNMLRMWKGE-DNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---  106 (189)
T ss_dssp             HHHHHHHHHHHHH-CTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHcC-CCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---
Confidence            3456777777777 6666677765442       2 33577888899999999999999999999999999988872   


Q ss_pred             cCCceEEeEEeecC-CcccccccCchHhHH
Q 036133           97 TNGQIVIPVFYSVS-PSDVRHQTGSFGHGF  125 (182)
Q Consensus        97 ~~~~~viPIfy~v~-p~~vr~q~g~f~~~f  125 (182)
                      +.+.+||-|..+-. .+++..-.|.|....
T Consensus       107 ~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~  136 (189)
T 3hyn_A          107 TKGLPVIVIYPDYDKKSDIVDSNGNFKKQI  136 (189)
T ss_dssp             TTCCCEEEEETTCCSGGGTBCTTSCBCHHH
T ss_pred             hcCCcEEEEECCccccchhhhccccchhhH
Confidence            23557888875532 334544445544333

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=84.26  E-value=5.7  Score=29.28  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             CCCCCCCCCCcccEEEec--ccccCccchHHHHHHHHhhcCCcceEeeCcc----ccCCCc-------chHHHHHHhhcC
Q 036133            1 MAASSSSSSCNYDVFLSF--RGEDTRVSFTCHLYYNLNERTKIKTFIDDEE----VRRGDE-------ISPALLNAIEGS   67 (182)
Q Consensus         1 m~s~ss~~~~~ydVFIS~--~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~----~~~G~~-------i~~~i~~aI~~S   67 (182)
                      ||.++-  +++..|||+=  .+..........+...|++ .| .++.+..-    -..|..       +...-.+.|++|
T Consensus         3 ~~~~~~--~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~-~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~a   78 (165)
T 2khz_A            3 MAASGE--QAPCSVYFCGSIRGGREDQALYARIVSRLRR-YG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQA   78 (165)
T ss_dssp             CCCCSS--CCCCEEEEECCCSSCSHHHHHHHHHHHHHHH-HS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHC
T ss_pred             cccCCC--CCCeEEEEECCCCCcHHHHHHHHHHHHHHHh-cC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhC
Confidence            555444  3445699982  2221112245789999999 89 77644321    112211       122334689999


Q ss_pred             ceEEEEeecCccCChhHHHHHHHHHHhhhcCCceEEeE
Q 036133           68 KISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPV  105 (182)
Q Consensus        68 ~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPI  105 (182)
                      ++.|++++   ..+.=+..|+..+....+    .|+-+
T Consensus        79 D~vva~~~---~~d~Gt~~EiGyA~algK----PVi~l  109 (165)
T 2khz_A           79 DVVVAEVT---QPSLGVGYELGRAVALGK----PILCL  109 (165)
T ss_dssp             SEEEEECS---SCCHHHHHHHHHHHHTCS----SEEEE
T ss_pred             CEEEEECC---CCCCCHHHHHHHHHHCCC----EEEEE
Confidence            99999987   456778899998876533    55544

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=83.31  E-value=8.8  Score=28.36  Aligned_cols=71  Identities=10%  Similarity=0.038  Sum_probs=49.5

Q ss_pred             cchHHHHHHHHhhcCCcceEeeCcccc-CCCcchHHHHHHhhcCceEEEEeec--CccCChhHHHHHHHHHHhhh
Q 036133           25 VSFTCHLYYNLNERTKIKTFIDDEEVR-RGDEISPALLNAIEGSKISVVIFSK--DYASSKWCLNELVKILECKH   96 (182)
Q Consensus        25 ~~fv~~L~~~L~~~~gi~~f~d~~~~~-~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~EL~~i~~~~~   96 (182)
                      ..+...+...|++ .|+.+|.-.++-. ....+...-.++|++|++.|.+++|  .-..++=...|+..+....+
T Consensus        26 ~~~~~~l~~~l~~-~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK   99 (161)
T 2f62_A           26 ASYYNKVRELLKK-ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   99 (161)
T ss_dssp             HHHHHHHHHHHHT-TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH-CCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC
Confidence            3678899999999 9999887432111 1223333336789999999999996  33345558889988876543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=83.18  E-value=9.9  Score=28.80  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=16.7

Q ss_pred             eCCCCChHHHHHHHHHHHHHHhccc
Q 036133          157 STKFRHDAQLVSKIVEDVLKKMEKI  181 (182)
Q Consensus       157 ~~~~~~e~~~i~~Iv~~v~~~l~~~  181 (182)
                      ++...+-.+..++|.+.|.+.|.+|
T Consensus       181 IDa~~~~e~V~~~i~~~i~~~L~~i  205 (205)
T 4hlc_A          181 VNADQPLENVVEDTYQTIIKYLEKI  205 (205)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHC--
T ss_pred             EECCCCHHHHHHHHHHHHHHHHhcC
Confidence            3444556777888888888888775

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=82.19  E-value=12  Score=28.05  Aligned_cols=152  Identities=16%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             EEecccccCc--cchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcC-------------------------
Q 036133           15 FLSFRGEDTR--VSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGS-------------------------   67 (182)
Q Consensus        15 FIS~~~~D~~--~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S-------------------------   67 (182)
                      ||.+-|-|..  .+-+..|.+.|+. .|+++..-..  +.|..+...+.+.+...                         
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~-~g~~v~~tre--P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~   78 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVILKRE--PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY   78 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEES--SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEC--CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777642  4456789999999 9998765421  22333332222211100                         


Q ss_pred             -ceEEEEeecCccCChhHHH--------HHHHHHHh-hhcCCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChH
Q 036133           68 -KISVVIFSKDYASSKWCLN--------ELVKILEC-KHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPE  137 (182)
Q Consensus        68 -~~~Ivv~S~~y~~S~wc~~--------EL~~i~~~-~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~  137 (182)
                       ...-+|++..|..|.....        ++..-+.. ....-.+=+.+|++++|+......+. .       .++ ++.+
T Consensus        79 L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~-~-------dr~-e~~e  149 (197)
T 3hjn_A           79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGE-L-------NRF-EKRE  149 (197)
T ss_dssp             HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----------CTT-CCHH
T ss_pred             HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcC-c-------Ccc-ccHH
Confidence             0123567788877766543        22222222 21122244567789988764332221 0       111 1223


Q ss_pred             HHHHHHHHHHhcccccc--ce-eCCCCChHHHHHHHHHHHHHHh
Q 036133          138 MVQKWRGALIETSHLAG--HE-STKFRHDAQLVSKIVEDVLKKM  178 (182)
Q Consensus       138 ~v~~W~~aL~~v~~~~G--~~-~~~~~~e~~~i~~Iv~~v~~~l  178 (182)
                      -.++-+++..+++.-.+  |. ++...+-.+.-++|.+.|.++|
T Consensus       150 f~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          150 FLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             HHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            34445555555554433  33 3444455556666666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	6e-20
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	1e-19

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 6e-20
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 7   SSSCNYDVFLSFRGEDTRVSFTCHLYYNL-NERTKIKTFIDDEEVRRGDEISPALLNAIE 65
           S +  YD F+S+   D        +   L N     K  +   +   G  I   ++++IE
Sbjct: 1   SRNICYDAFVSYSERDAY-WVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIE 59

Query: 66  GSKISVVIFSKDYASSKWCLNELVKIL-ECKHTNGQIVIPVFYSVSPSDVRHQ 117
            S  +V + S+++  S+WC  EL          N    I +           Q
Sbjct: 60  KSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 1e-19
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 12  YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
           +  F+S+ G D+       L  NL E+  ++  + +     G  I   ++  IE S  S+
Sbjct: 13  FHAFISYSGHDSF-WVKNELLPNL-EKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 72  VIFSKDYASSKWCLNELVKILECKHTNGQIV-IPVFYSVSPSDVRHQT 118
            + S ++  S+WC  EL          G    I +     P      +
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.89
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.89
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	89.5
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	80.36

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-24  Score=162.84  Aligned_cols=104  Identities=21%  Similarity=0.338  Sum_probs=91.2

Q ss_pred             CCCCcccEEEecccccCccchH-HHHHHHHhhc-CCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhH
Q 036133            7 SSSCNYDVFLSFRGEDTRVSFT-CHLYYNLNER-TKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWC   84 (182)
Q Consensus         7 ~~~~~ydVFIS~~~~D~~~~fv-~~L~~~L~~~-~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   84 (182)
                      |+++.|||||||+++|  ..|| ..|...|++. .|+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|+.|.||
T Consensus         1 ~~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            4578999999999999  4566 5699999863 5999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hcCCceEEeEEeecCCc
Q 036133           85 LNELVKILECK-HTNGQIVIPVFYSVSPS  112 (182)
Q Consensus        85 ~~EL~~i~~~~-~~~~~~viPIfy~v~p~  112 (182)
                      ..|+..++... +.++.++|||+++..|.
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~~  107 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIEK  107 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCch
Confidence            99998877653 55677999999975443

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-24  Score=163.13  Aligned_cols=101  Identities=22%  Similarity=0.432  Sum_probs=91.8

Q ss_pred             CCCcccEEEecccccCccchH-HHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHH
Q 036133            8 SSCNYDVFLSFRGEDTRVSFT-CHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLN   86 (182)
Q Consensus         8 ~~~~ydVFIS~~~~D~~~~fv-~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   86 (182)
                      ++++|||||||+++|  ..|| ..|...|++ .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|..|.||..
T Consensus         9 ~~~~yDvFisys~~D--~~~v~~~L~~~Le~-~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~   85 (161)
T d1fyva_           9 RNLQFHAFISYSGHD--SFWVKNELLPNLEK-EGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHY   85 (161)
T ss_dssp             SCCCEEEEEECCGGG--HHHHHHTHHHHHHT-TTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHH
T ss_pred             CCCeeEEEEecChhH--HHHHHHHHHHHHHh-CCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHH
Confidence            378999999999999  4577 569999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-hcCCceEEeEEeecCC
Q 036133           87 ELVKILECK-HTNGQIVIPVFYSVSP  111 (182)
Q Consensus        87 EL~~i~~~~-~~~~~~viPIfy~v~p  111 (182)
                      |+..++.+. +.++.++|||+++..|
T Consensus        86 E~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          86 ELYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HHHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHHHcCCCceeEEEEecCc
Confidence            999998874 4566799999997544

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.50  E-value=0.54  Score=29.98  Aligned_cols=61  Identities=18%  Similarity=0.118  Sum_probs=43.9

Q ss_pred             CcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeec
Q 036133           10 CNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSK   76 (182)
Q Consensus        10 ~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~   76 (182)
                      ...+|||..-++.. ..++..|...|++ .||++.+|..    +..+...+..|-..---.++|+-+
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~-~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRE-RGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHT-TTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHH-CCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCC
Confidence            35789999888776 4678999999999 9999999864    445666777764433334444443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.36  E-value=3.2  Score=28.71  Aligned_cols=74  Identities=11%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             cCccchHHHHHHHHhhcCCcceEeeCcc-ccCCCcchHHHHHHhhcCceEEEEeecC--ccCChhHHHHHHHHHHhhh
Q 036133           22 DTRVSFTCHLYYNLNERTKIKTFIDDEE-VRRGDEISPALLNAIEGSKISVVIFSKD--YASSKWCLNELVKILECKH   96 (182)
Q Consensus        22 D~~~~fv~~L~~~L~~~~gi~~f~d~~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~--y~~S~wc~~EL~~i~~~~~   96 (182)
                      |....+...+...|++ .|+.++.-.++ ......|-..-.+.|++|++.|.+++|-  -..++=+..|+..+....+
T Consensus        15 d~~~~~~~~i~~~l~~-~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algK   91 (152)
T d2f62a1          15 DMGASYYNKVRELLKK-ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   91 (152)
T ss_dssp             TTTHHHHHHHHHHHHT-TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHH-CCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCC
Confidence            3345678889999999 99999864321 2222335555567899999999999852  2345568899999887643