Citrus Sinensis ID: 036136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNES
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccEEEEEEEHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maihvpgiMHAKQILRQAKLIVSqgvstskvvpkghFAVYVGENQKKRFVipvsflnqpSFQELLSKAEEefgfdhpmggltipcreDIFINVTSSLNES
Flexible Loop (DISEMBL)
MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNES
Low Complexity Region (SEG)
MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNES
Disordered region (IsUnstruct)
****VPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINV*******
Disordered Region (DISOPRED)
*AIH***IMHA***********************GHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN**
Disordered Region (DISEMBL)
MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNES
Disordered Region (DISPRO)
*AIHVPGIMHAKQILRQAKLIV******SKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
P33079	93	Auxin-induced protein 10A	no	no	0.85	0.913	0.627	9e-27
P33080	92	Auxin-induced protein X10	no	no	0.91	0.989	0.565	2e-26
P33081	82	Auxin-induced protein 15A	no	no	0.82	1.0	0.581	6e-25
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.88	0.956	0.58	1e-24
P33083	90	Auxin-induced protein 6B	no	no	0.9	1.0	0.561	9e-24
P33082	82	Auxin-induced protein X15	no	no	0.82	1.0	0.540	2e-23

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%), Gaps = 1/86 (1%)

Query: 14 ILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFG 73
          I+R+     +Q  S    VPKG+ AVYVG ++ +RF IPVS+LN+PSFQELLS+AEEEFG
Sbjct: 8  IVRRTSFYTTQAASKRVDVPKGYAAVYVG-DKMRRFTIPVSYLNEPSFQELLSQAEEEFG 66

Query: 74 FDHPMGGLTIPCREDIFINVTSSLNE 99
          +DHPMGGLTIPC+E+ F+NVT+ LNE
Sbjct: 67 YDHPMGGLTIPCKEEEFLNVTAHLNE 92

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 73/99 (73%), Gaps = 8/99 (8%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          M   +PGI       R+  +  +Q  S S  VPKG+  VYVG+ + +RF+IPVS+LNQPS
Sbjct: 1  MGFRLPGI-------RKTSIAANQASSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPS 52

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNE 99
          FQ+LL++AEEEFG+DHPMGGLTIPC+ED F+ VTS LN+
Sbjct: 53 FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLND 91

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 16/98 (16%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          M   +PGI  A               S +   PKG+ AVYVGE + KRFVIPVS+LNQPS
Sbjct: 1  MGFRLPGIRKA---------------SKAADAPKGYLAVYVGE-KLKRFVIPVSYLNQPS 44

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
          FQ+LLS+AEEEFG+DHPMGGLTIPC ED+F  +TS LN
Sbjct: 45 FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 12/100 (12%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVV--PKGHFAVYVGENQKKRFVIPVSFLNQ 58
          M   +PGI          K + ++  ++SKV+  PKG+ AVYVGEN K RFVIPVS LNQ
Sbjct: 1  MGFRLPGIR---------KTLSARNEASSKVLDAPKGYLAVYVGENMK-RFVIPVSHLNQ 50

Query: 59 PSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
          P FQ+LLS+AEEEFG+DHPMGGLTIPC ED+F ++TS L+
Sbjct: 51 PLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLS 90

Vigna radiata var. radiata (taxid: 3916)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 8/98 (8%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          M   +PGI       R+A    +Q  S +  V KG+ AVYVGE + +RFVIPVS+LN+PS
Sbjct: 1  MGFRLPGI-------RKASFSANQASSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPS 52

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
          FQ+LLS+AEEEFG+ HP GGLTIPC ED+F ++TS LN
Sbjct: 53 FQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 66/98 (67%), Gaps = 16/98 (16%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          M   +PGI  A               S +   PKG+ AVYVGE + KRFVIPVS++NQPS
Sbjct: 1  MGFRLPGIRKA---------------SNAVDAPKGYLAVYVGE-KMKRFVIPVSYMNQPS 44

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
          FQ+LL++AEEEFG+DHPMGGLTIPC E++F  +T  LN
Sbjct: 45 FQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCLN 82

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
224080524	96	SAUR family protein [Populus trichocarpa	0.96	1.0	0.68	1e-33
356517873	100	PREDICTED: auxin-induced protein 10A5-li	0.98	0.98	0.693	2e-33
356509541	95	PREDICTED: indole-3-acetic acid-induced	0.94	0.989	0.686	4e-32
356508118	106	PREDICTED: auxin-induced protein 10A5-li	0.97	0.915	0.659	9e-32
388490922	100	unknown [Lotus japonicus]	0.98	0.98	0.673	1e-31
351727258	95	uncharacterized protein LOC100306459 [Gl	0.93	0.978	0.683	4e-31
224103279	93	SAUR family protein [Populus trichocarpa	0.91	0.978	0.69	6e-31
359476765	94	PREDICTED: auxin-induced protein 10A5 [V	0.94	1.0	0.68	6e-31
356508124	95	PREDICTED: indole-3-acetic acid-induced	0.93	0.978	0.673	2e-30
225430957	103	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.970	0.601	3e-30

>gi|224080524|ref|XP_002306150.1| SAUR family protein [Populus trichocarpa] gi|222849114|gb|EEE86661.1| SAUR family protein [Populus trichocarpa]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 82/100 (82%), Gaps = 4/100 (4%)

Query: 1   MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
           MAI + GIM+AKQILR++ L+ +Q       VPKG+FAVYVGE+QKKRF +P+SFLNQPS
Sbjct: 1   MAILLKGIMNAKQILRRSNLLANQATE----VPKGYFAVYVGESQKKRFTVPISFLNQPS 56

Query: 61  FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNES 100
           FQELL KAEEEFG+ HPMGGLT+PCRED FI++ S LN S
Sbjct: 57  FQELLRKAEEEFGYSHPMGGLTLPCREDTFIDIISGLNLS 96

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517873|ref|XP_003527610.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 80/98 (81%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          MAI +P I+ AK ILR++ L  +   +TS  VPKGHFAVYVGE +KKRFVIPVS+LNQPS
Sbjct: 1  MAIRLPSILSAKYILRRSNLFANHAATTSLDVPKGHFAVYVGEGEKKRFVIPVSYLNQPS 60

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
          FQELLS AEEEFGF HPMGGL IPC E+IF+N+TS L+
Sbjct: 61 FQELLSIAEEEFGFSHPMGGLIIPCTEEIFLNITSGLH 98

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509541|ref|XP_003523506.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Glycine max]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 78/99 (78%), Gaps = 5/99 (5%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          MAI +P ++ AK I R+     S   +TS  VPKGHFAVYVGE +KKRFVIPVS+LNQPS
Sbjct: 1  MAIRLPCVLSAKHIFRR-----SNAAATSLDVPKGHFAVYVGEGEKKRFVIPVSYLNQPS 55

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNE 99
          FQELLS AEEEFGF HPMGGLTIPC EDIF+N+TS+L  
Sbjct: 56 FQELLSIAEEEFGFSHPMGGLTIPCTEDIFLNITSALRR 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508118|ref|XP_003522807.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 78/97 (80%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          MAI +P ++ AK ILR++ L  +   +TS  VPKGHFAVYVGE +K+R+VIPVS+LNQPS
Sbjct: 1  MAIRLPSVLSAKYILRRSNLFANHAATTSLDVPKGHFAVYVGEGEKRRYVIPVSYLNQPS 60

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSL 97
          FQELLS AEEEFGF HPMGGL IPC E+ F+N+TS L
Sbjct: 61 FQELLSIAEEEFGFSHPMGGLIIPCTEENFLNITSGL 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490922|gb|AFK33527.1| unknown [Lotus japonicus]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 77/98 (78%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          MAI +   + AK+ILR + L  +Q  +TS  VPKG+FAVYVGE++KKRFVIPVS LNQPS
Sbjct: 1  MAIRLSSALSAKRILRGSSLFANQAAATSLDVPKGYFAVYVGESEKKRFVIPVSLLNQPS 60

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
          FQELLS AEEEFGF HPMGGL IPC EDIF+ V S L+
Sbjct: 61 FQELLSAAEEEFGFSHPMGGLIIPCTEDIFVEVASGLH 98

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727258|ref|NP_001235363.1| uncharacterized protein LOC100306459 [Glycine max] gi|255628609|gb|ACU14649.1| unknown [Glycine max]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 77/98 (78%), Gaps = 5/98 (5%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          MAI +P  + A+ ILR+     S   +TS  VPKG+FAVYVGE +KKRFVIPVS LNQPS
Sbjct: 2  MAIRLPSALSARHILRR-----SNAAATSLDVPKGYFAVYVGEGEKKRFVIPVSLLNQPS 56

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
          FQELLS AEEEFGF HPMGGLTIPC EDIF+N+TS L+
Sbjct: 57 FQELLSIAEEEFGFTHPMGGLTIPCTEDIFVNITSGLH 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103279|ref|XP_002312994.1| SAUR family protein [Populus trichocarpa] gi|222849402|gb|EEE86949.1| SAUR family protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 80/100 (80%), Gaps = 9/100 (9%)

Query: 1  MAIHVPGIMHAKQ-ILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQP 59
          MAI +P I+  KQ ILR        G S +K V KG+ AVYVGE +KKRFVIPVS+LNQP
Sbjct: 2  MAIRLPRILQVKQNILR--------GSSAAKDVRKGYIAVYVGEEEKKRFVIPVSYLNQP 53

Query: 60 SFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNE 99
          SFQ+LLSKAEEEFGF+HPMGGLTIPCREDIFI++TSSL +
Sbjct: 54 SFQDLLSKAEEEFGFEHPMGGLTIPCREDIFIDLTSSLKD 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476765|ref|XP_002271529.2| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 82/100 (82%), Gaps = 6/100 (6%)

Query: 1   MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
           M IH+P I+ AKQIL   KL VS   ST+  VPKGHFAVYVGE +KKRFV+P+S+LN PS
Sbjct: 1   MGIHLPSIVQAKQIL---KLSVS---STTAEVPKGHFAVYVGETEKKRFVVPISYLNNPS 54

Query: 61  FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNES 100
           FQ+LLS AEEEFGF+HPMGG+TIPC+E+ FI++TS LN S
Sbjct: 55  FQKLLSHAEEEFGFNHPMGGVTIPCKEESFIDLTSHLNSS 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508124|ref|XP_003522810.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Glycine max]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 77/98 (78%), Gaps = 5/98 (5%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPS 60
          MAI +P  + A+ ILR+     S   +TS  VPKG FAVYVGE +KKRFVIPVS LNQPS
Sbjct: 2  MAIRLPSALSARHILRR-----SNAAATSLDVPKGCFAVYVGEGEKKRFVIPVSLLNQPS 56

Query: 61 FQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
          FQELLS AE+EFGF HPMGGLTIPC+EDIF+N+TS L+
Sbjct: 57 FQELLSIAEQEFGFTHPMGGLTIPCKEDIFVNITSGLH 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430957|ref|XP_002271621.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera] gi|147839952|emb|CAN70455.1| hypothetical protein VITISV_035059 [Vitis vinifera] gi|297735267|emb|CBI17629.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 81/103 (78%), Gaps = 3/103 (2%)

Query: 1   MAIHVPGIMHAKQILRQAKLIVSQGVS---TSKVVPKGHFAVYVGENQKKRFVIPVSFLN 57
           M   +P I+HAKQIL+   L+    +S   T+ VVPKGHFAVYVGE +KKRFV+P+S+LN
Sbjct: 1   MGFRMPSILHAKQILKLQSLLTRSQLSISATTAVVPKGHFAVYVGEAEKKRFVVPISYLN 60

Query: 58  QPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNES 100
            PSFQ+ LS +EEEFGF+HPMGG+TIPC+E+ FI++TS L+ S
Sbjct: 61  NPSFQKFLSHSEEEFGFNHPMGGVTIPCKEESFIDLTSRLSSS 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.98	0.989	0.666	6.9e-31
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.8	0.888	0.712	4.5e-27
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.78	0.857	0.705	7.3e-27
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.8	0.888	0.687	1.5e-26
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.81	0.9	0.691	1.5e-26
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.78	0.886	0.712	4e-26
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.8	0.888	0.675	1.8e-25
TAIR|locus:2047037	86	AT2G21200 "AT2G21200" [Arabido	0.8	0.930	0.666	7.6e-25
TAIR|locus:4515103510	89	AT4G38825 "AT4G38825" [Arabido	0.83	0.932	0.666	1.6e-24
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.85	0.809	0.611	4.2e-24

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 66/99 (66%), Positives = 80/99 (80%)

Query:     1 MAIHVPGIMHA-KQILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQP 59
             MAI +P ++ + KQILRQAKL+ S   S+S  VPKG+ AVYVGE   KRFV+PVS+L+QP
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    60 SFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98
             SFQ+LL KAEEEFGFDHPMGGLTIPC E+IFI++ S  N
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 57/80 (71%), Positives = 65/80 (81%)

Query:    18 AKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP 77
             AK I+S+        PKG  AVYVGE+QKKR+++PVS+LNQPSFQ LLSK+EEEFGFDHP
Sbjct:    10 AKKILSRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHP 69

Query:    78 MGGLTIPCREDIFINVTSSL 97
             MGGLTIPC ED FINVTS L
Sbjct:    70 MGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 55/78 (70%), Positives = 66/78 (84%)

Query:    18 AKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP 77
             AK I+S+  + +   PKG  AVYVGE+QKKR+++P+S+LNQPSFQ LLSK+EEEFGFDHP
Sbjct:    10 AKKILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHP 69

Query:    78 MGGLTIPCREDIFINVTS 95
             MGGLTIPC ED FINVTS
Sbjct:    70 MGGLTIPCPEDTFINVTS 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 55/80 (68%), Positives = 66/80 (82%)

Query:    18 AKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP 77
             AK I+S+  +     PKG  AVYVGE+QKKR+++P+S+LNQPSFQ LLSK+E+EFGFDHP
Sbjct:    10 AKKILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHP 69

Query:    78 MGGLTIPCREDIFINVTSSL 97
             MGGLTIPC ED FINVTS L
Sbjct:    70 MGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 56/81 (69%), Positives = 67/81 (82%)

Query:    18 AKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP 77
             AK I+S+  +     PKG  AVYVGE+QKKR+++P+S+LNQPSFQ LLSK+EEEFGFDHP
Sbjct:    10 AKKILSRSAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHP 69

Query:    78 MGGLTIPCREDIFINVTSSLN 98
             MGGLTIPC ED FINVTS L+
Sbjct:    70 MGGLTIPCPEDTFINVTSRLH 90

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 57/80 (71%), Positives = 68/80 (85%)

Query:    18 AKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP 77
             AK I+S+  ST+   PKG  AVYVGE+QKKR+++P+S+L+QPSFQ LLSK+EEEFGFDHP
Sbjct:    10 AKKILSR--STASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHP 67

Query:    78 MGGLTIPCREDIFINVTSSL 97
             MGGLTIPC ED FINVTS L
Sbjct:    68 MGGLTIPCPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 54/80 (67%), Positives = 65/80 (81%)

Query:    18 AKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP 77
             AK I+S+  +     PKG  AVYVGE+QKKR+++P+S+L+QPSFQ LLSK+EEEFGF HP
Sbjct:    10 AKKILSRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHP 69

Query:    78 MGGLTIPCREDIFINVTSSL 97
             MGGLTIPC ED FINVTS L
Sbjct:    70 MGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047037 AT2G21200 "AT2G21200" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 56/84 (66%), Positives = 64/84 (76%)

Query:    14 ILRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFG 73
             IL   K++ S+  ST    PKG  AVYVGE+QKKR+++PVSFLNQPSFQ LLS AEEEFG
Sbjct:     7 ILAARKILTSKAAST----PKGFLAVYVGESQKKRYMVPVSFLNQPSFQALLSTAEEEFG 62

Query:    74 FDHPMGGLTIPCREDIFINVTSSL 97
             FDHPMGGLTIPC ED F+   S L
Sbjct:    63 FDHPMGGLTIPCPEDTFVAAASQL 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:4515103510 AT4G38825 "AT4G38825" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 56/84 (66%), Positives = 65/84 (77%)

Query:    15 LRQAKLIVSQGVSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGF 74
             L  AK I  QG S +   PKG  AVYVGE+Q KR+++PVS+LNQPSFQ LLSK+E+EFGF
Sbjct:     7 LMGAKKIF-QGRSMAASTPKGFLAVYVGESQMKRYIVPVSYLNQPSFQALLSKSEQEFGF 65

Query:    75 DHPMGGLTIPCREDIFINVTSSLN 98
             DHPMGGLTIPC  D FI VTS L+
Sbjct:    66 DHPMGGLTIPCPVDTFITVTSQLH 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 55/90 (61%), Positives = 69/90 (76%)

Query:    12 KQILRQAKLIVSQGVSTSKV--VPKGHFAVYVGEN---QKKRFVIPVSFLNQPSFQELLS 66
             KQIL+   L      S+S    VPKGH AVYVGE    +KKRFV+P+SFLN PSF+E LS
Sbjct:    13 KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLS 72

Query:    67 KAEEEFGFDHPMGGLTIPCREDIFINVTSS 96
             +AEEEFGF+HPMGGLTIPCRE++F+++ +S
Sbjct:    73 RAEEEFGFNHPMGGLTIPCREEVFLDLIAS 102

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.58	0.88	0.9565	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	5e-39
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-32
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	4e-29
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-27

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  125 bits (315), Expect = 5e-39
 Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 5/100 (5%)

Query: 1  MAIHVPGIMHAKQILRQAKLIVSQGV---STSKVVPKGHFAVYVGENQKKRFVIPVSFLN 57
          MA  +     AK+ +  A    S+G    S+S  VPKGHFAVYVGE   +RFV+P+S+LN
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGEE-TRRFVVPISYLN 59

Query: 58 QPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSL 97
           P FQELL +AEEEFGFD   GGLTIPC   +F ++   L
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score =  108 bits (271), Expect = 2e-32
 Identities = 55/90 (61%), Positives = 69/90 (76%), Gaps = 5/90 (5%)

Query: 12  KQILRQAKLIVSQGVSTSKV--VPKGHFAVYVGEN---QKKRFVIPVSFLNQPSFQELLS 66
           KQIL+   L      S+S    VPKGH AVYVGE    +KKRFV+P+SFLN PSF+E LS
Sbjct: 13  KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLS 72

Query: 67  KAEEEFGFDHPMGGLTIPCREDIFINVTSS 96
           +AEEEFGF+HPMGGLTIPCRE++F+++ +S
Sbjct: 73  RAEEEFGFNHPMGGLTIPCREEVFLDLIAS 102

Length = 105

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score =  100 bits (250), Expect = 4e-29
 Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 2/66 (3%)

Query: 32  VPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFI 91
           VPKGHF VYVGEN + R+++P+SFL  P FQ LL +AEEEFGFDH M GLTIPC E +F 
Sbjct: 40  VPKGHFPVYVGEN-RSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDM-GLTIPCEEVVFR 97

Query: 92  NVTSSL 97
           ++TS +
Sbjct: 98  SLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 96.4 bits (239), Expect = 1e-27
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 8/95 (8%)

Query: 10  HAKQILRQAKLIVSQGVS-------TSKVVPKGHFAVYVGEN-QKKRFVIPVSFLNQPSF 61
           +AKQI +   +    G S       TS +VPKGH AVYVGE  +KKRFV+P+S+LN P F
Sbjct: 10  NAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLF 69

Query: 62  QELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSS 96
           +E L++AEEE GF H MGGLTIPCRE+ F+++ +S
Sbjct: 70  REFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	84.57
PRK02899	197	adaptor protein; Provisional	83.51
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	83.0

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.3e-41  Score=235.47  Aligned_cols=96  Identities=49%  Similarity=0.834  Sum_probs=87.5

Q ss_pred             Cccccch----hHHHHHHHHHhhhhhhcCc----cccccCCCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhc
Q 036136            1 MAIHVPG----IMHAKQILRQAKLIVSQGV----STSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEF   72 (100)
Q Consensus         1 m~~~~~~----~~~~k~~l~r~~~~~~~~~----~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEf   72 (100)
                      |||+..+    ++++||+|+||+|..++++    ..+.+||+||||||||+ +++||+||++|||||.|++||++|||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            7887554    5689999999999988643    36789999999999998 8999999999999999999999999999


Q ss_pred             CCcCCCCceeeeCcHHHHHHHHHhhc
Q 036136           73 GFDHPMGGLTIPCREDIFINVTSSLN   98 (100)
Q Consensus        73 G~~~~~G~L~IPC~~~~Fe~vl~~l~   98 (100)
                      ||+|+ |+|+|||+++.|++++|+|+
T Consensus        80 Gf~~~-G~L~IPC~~~~Fe~ll~~i~  104 (104)
T PLN03090         80 GFDHD-MGLTIPCEEVVFRSLTSMIR  104 (104)
T ss_pred             CCCCC-CcEEEeCCHHHHHHHHHHhC
Confidence            99998 89999999999999999983

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=2.4e-40  Score=229.37  Aligned_cols=96  Identities=59%  Similarity=1.022  Sum_probs=84.8

Q ss_pred             CccccchhH-HHHHHHHHhhhhhhc--CccccccCCCceEEEEeeCC---CceEEEEeecCCCCHHHHHHHHhhHHhcCC
Q 036136            1 MAIHVPGIM-HAKQILRQAKLIVSQ--GVSTSKVVPKGHFAVYVGEN---QKKRFVIPVSFLNQPSFQELLSKAEEEFGF   74 (100)
Q Consensus         1 m~~~~~~~~-~~k~~l~r~~~~~~~--~~~~~~~vpkG~~aVyVG~~---e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~   74 (100)
                      ||+++++|+ +.||+|+||+...+.  .++.+.+|||||||||||++   +++|||||++|||||.|++||++|||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            999999999 559999999943332  23577899999999999973   589999999999999999999999999999


Q ss_pred             cCCCCceeeeCcHHHHHHHHHh
Q 036136           75 DHPMGGLTIPCREDIFINVTSS   96 (100)
Q Consensus        75 ~~~~G~L~IPC~~~~Fe~vl~~   96 (100)
                      +|++|+|+|||+++.|+++++.
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHHh
Confidence            9966999999999999999863

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.4e-37  Score=211.95  Aligned_cols=96  Identities=51%  Similarity=0.818  Sum_probs=80.5

Q ss_pred             CccccchhHHHHHHHHHhhhhhhcC----ccccccCCCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcC
Q 036136            1 MAIHVPGIMHAKQILRQAKLIVSQG----VSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDH   76 (100)
Q Consensus         1 m~~~~~~~~~~k~~l~r~~~~~~~~----~~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~   76 (100)
                      |.-++..+..+++...+++....+.    ++...++|+||||||||+ +++||+||++|||||+|++||++|||||||++
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~   79 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ   79 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence            5666666666666655555433322    223489999999999999 99999999999999999999999999999999


Q ss_pred             CCCceeeeCcHHHHHHHHHhhc
Q 036136           77 PMGGLTIPCREDIFINVTSSLN   98 (100)
Q Consensus        77 ~~G~L~IPC~~~~Fe~vl~~l~   98 (100)
                      + |+|+|||+++.|++++|+|+
T Consensus        80 ~-G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   80 D-GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             C-CcEEeeCCHHHHHHHHHHhC
Confidence            6 99999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=206.38  Aligned_cols=71  Identities=63%  Similarity=1.137  Sum_probs=65.9

Q ss_pred             cccccCCCceEEEEeeC-CCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeeeCcHHHHHHHHHhh
Q 036136           27 STSKVVPKGHFAVYVGE-NQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSL   97 (100)
Q Consensus        27 ~~~~~vpkG~~aVyVG~-~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l   97 (100)
                      +.+.+|||||||||||+ +|++||+||++|||||+|++||++|||||||+|++|+|+|||+++.|+++++.-
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            46678999999999998 379999999999999999999999999999998669999999999999999864

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=84.57  E-value=1.1  Score=28.86  Aligned_cols=57  Identities=23%  Similarity=0.243  Sum_probs=41.3

Q ss_pred             EEeeCCCceEEEEeecCCC-CH--HHHHHHHhhHHhcCCcCCCCceeeeCcHHHHHHHHHhhcc
Q 036136           39 VYVGENQKKRFVIPVSFLN-QP--SFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNE   99 (100)
Q Consensus        39 VyVG~~e~~RfvVp~~~L~-hp--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~   99 (100)
                      +=||.   ++|.++.+-|. +|  .|..++........ ..+.|.+-|-++...|++|+..++.
T Consensus         3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~-~~~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDY-DDDDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGE-ETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEECC---EEEEEcHHHHhhCCCChhhhHHhhcccccc-CCccceEEeccChhhhhHHHHHHhh
Confidence            44775   99999998887 54  68888886522222 2234899999999999999998764

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=83.51  E-value=0.96  Score=34.11  Aligned_cols=24  Identities=25%  Similarity=0.726  Sum_probs=20.7

Q ss_pred             HHHHHHHHhhHHhcCCcCCCCceee
Q 036136           59 PSFQELLSKAEEEFGFDHPMGGLTI   83 (100)
Q Consensus        59 p~F~~LL~~aeEEfG~~~~~G~L~I   83 (100)
                      -+|.++|++|..|+||.-+ |||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            3588889999999999976 99986

>smart00666 PB1 PB1 domain

Probab=83.00  E-value=5.5  Score=24.74  Aligned_cols=51  Identities=22%  Similarity=0.425  Sum_probs=37.5

Q ss_pred             eCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCc----------CCCCceeeeCcHHHHHHHHHhhc
Q 036136           42 GENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFD----------HPMGGLTIPCREDIFINVTSSLN   98 (100)
Q Consensus        42 G~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~   98 (100)
                      |+ +.+||.+|-    ...|.+|..+..+.|+..          .++..++|.++ +++..++++..
T Consensus         9 ~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd-~Dl~~a~~~~~   69 (81)
T smart00666        9 GG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSD-EDLEEAIEEYD   69 (81)
T ss_pred             CC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCH-HHHHHHHHHHH
Confidence            55 789999985    778999999999998874          23347888886 45666665543

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1f2ri_	100	d.15.2.1 (I:) Inhibitor of caspase-activated DNase	0.003

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00